Query 003146
Match_columns 844
No_of_seqs 454 out of 3126
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 17:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.7E-52 1.9E-56 504.6 64.6 612 183-836 13-764 (2102)
2 PLN03200 cellulose synthase-in 100.0 4.5E-49 9.7E-54 481.0 67.9 614 184-843 59-818 (2102)
3 KOG0166 Karyopherin (importin) 100.0 8.8E-34 1.9E-38 305.4 37.9 412 310-800 68-490 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.5E-33 3.3E-38 279.5 30.2 416 309-801 72-501 (526)
5 KOG4224 Armadillo repeat prote 100.0 8.3E-34 1.8E-38 283.7 21.6 440 307-802 84-528 (550)
6 KOG4224 Armadillo repeat prote 100.0 8.4E-32 1.8E-36 269.4 27.5 396 226-681 86-494 (550)
7 KOG0166 Karyopherin (importin) 100.0 1.9E-29 4.1E-34 272.0 36.7 398 392-834 68-484 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 3.1E-28 6.8E-33 241.8 27.7 400 391-834 72-494 (526)
9 PF05804 KAP: Kinesin-associat 100.0 3.4E-25 7.4E-30 252.9 46.4 511 185-753 125-650 (708)
10 PF05804 KAP: Kinesin-associat 99.9 5.1E-22 1.1E-26 227.0 42.6 477 266-798 122-651 (708)
11 KOG1048 Neural adherens juncti 99.9 3.1E-20 6.7E-25 206.8 24.9 425 309-808 234-696 (717)
12 KOG1048 Neural adherens juncti 99.8 7E-19 1.5E-23 196.1 27.0 341 268-612 234-665 (717)
13 KOG1222 Kinesin associated pro 99.7 1.3E-15 2.7E-20 158.7 28.9 382 322-754 277-665 (791)
14 KOG2122 Beta-catenin-binding p 99.7 8.8E-15 1.9E-19 168.9 35.0 342 203-548 214-604 (2195)
15 KOG2122 Beta-catenin-binding p 99.7 3.9E-16 8.4E-21 179.9 22.1 344 280-637 208-601 (2195)
16 KOG4199 Uncharacterized conser 99.7 5.7E-13 1.2E-17 133.8 32.8 320 223-590 102-446 (461)
17 PF10508 Proteasom_PSMB: Prote 99.6 1.4E-12 3.1E-17 148.6 37.1 396 228-634 41-462 (503)
18 PRK09687 putative lyase; Provi 99.6 1.1E-13 2.4E-18 144.8 21.1 255 473-833 24-279 (280)
19 PF04826 Arm_2: Armadillo-like 99.6 1.9E-13 4.1E-18 139.7 20.2 195 263-464 8-206 (254)
20 KOG1293 Proteins containing ar 99.6 1.5E-12 3.2E-17 142.2 27.3 481 317-834 18-531 (678)
21 PRK09687 putative lyase; Provi 99.6 5.6E-13 1.2E-17 139.6 23.4 254 432-793 24-279 (280)
22 KOG4500 Rho/Rac GTPase guanine 99.5 8.7E-12 1.9E-16 129.2 28.9 398 224-636 86-518 (604)
23 KOG4500 Rho/Rac GTPase guanine 99.5 1.4E-11 3E-16 127.7 28.8 357 185-545 89-519 (604)
24 KOG4199 Uncharacterized conser 99.5 2.9E-11 6.3E-16 121.7 28.6 297 199-502 123-445 (461)
25 PRK13800 putative oxidoreducta 99.5 4.4E-12 9.6E-17 154.9 27.7 278 429-833 619-896 (897)
26 PF10508 Proteasom_PSMB: Prote 99.5 7.3E-11 1.6E-15 134.7 33.7 356 185-544 79-461 (503)
27 PRK13800 putative oxidoreducta 99.5 1E-11 2.2E-16 151.7 28.2 276 389-792 620-895 (897)
28 PF01602 Adaptin_N: Adaptin N 99.4 2.1E-10 4.6E-15 133.9 36.3 497 196-792 19-520 (526)
29 KOG1222 Kinesin associated pro 99.4 2.2E-10 4.8E-15 120.1 30.1 380 284-686 281-669 (791)
30 KOG2171 Karyopherin (importin) 99.4 5.1E-09 1.1E-13 122.0 43.9 463 184-683 5-507 (1075)
31 PF01602 Adaptin_N: Adaptin N 99.4 3.9E-10 8.5E-15 131.6 35.3 473 267-835 42-523 (526)
32 KOG2171 Karyopherin (importin) 99.4 3.8E-09 8.3E-14 123.1 41.3 535 229-835 8-593 (1075)
33 PF04826 Arm_2: Armadillo-like 99.4 3.7E-11 8.1E-16 122.9 19.9 195 346-548 9-208 (254)
34 KOG1293 Proteins containing ar 99.4 8.7E-10 1.9E-14 120.9 30.8 478 234-754 18-535 (678)
35 KOG2023 Nuclear transport rece 99.3 2.1E-09 4.6E-14 117.2 28.2 522 226-796 129-775 (885)
36 PTZ00429 beta-adaptin; Provisi 99.2 1.8E-06 3.8E-11 101.6 49.4 527 205-835 10-545 (746)
37 PTZ00429 beta-adaptin; Provisi 99.2 3.1E-07 6.7E-12 107.9 41.7 435 266-797 31-472 (746)
38 cd00020 ARM Armadillo/beta-cat 99.1 1E-09 2.2E-14 100.3 13.0 116 303-419 3-120 (120)
39 cd00020 ARM Armadillo/beta-cat 99.1 2.1E-09 4.5E-14 98.3 13.8 117 344-463 2-120 (120)
40 cd00256 VATPase_H VATPase_H, r 99.0 2.8E-07 6.1E-12 100.6 27.7 314 226-543 54-423 (429)
41 KOG2023 Nuclear transport rece 98.9 1.5E-07 3.2E-12 103.2 23.1 537 268-838 129-777 (885)
42 KOG0168 Putative ubiquitin fus 98.9 6E-07 1.3E-11 101.1 28.1 221 388-613 209-438 (1051)
43 KOG0213 Splicing factor 3b, su 98.8 1.2E-05 2.6E-10 89.4 31.2 452 317-836 562-1065(1172)
44 KOG0168 Putative ubiquitin fus 98.8 3E-06 6.6E-11 95.6 26.9 380 184-568 168-652 (1051)
45 cd00256 VATPase_H VATPase_H, r 98.7 4.9E-06 1.1E-10 91.0 26.6 320 308-635 53-423 (429)
46 KOG1241 Karyopherin (importin) 98.7 2.4E-05 5.3E-10 87.8 31.9 395 399-838 99-532 (859)
47 KOG0946 ER-Golgi vesicle-tethe 98.7 0.00015 3.2E-09 81.9 37.8 316 226-547 23-401 (970)
48 KOG0946 ER-Golgi vesicle-tethe 98.7 7.3E-05 1.6E-09 84.2 33.5 461 185-677 24-555 (970)
49 KOG1241 Karyopherin (importin) 98.7 0.00057 1.2E-08 77.2 40.1 535 232-820 97-693 (859)
50 KOG2160 Armadillo/beta-catenin 98.6 2E-06 4.3E-11 89.6 17.8 183 319-502 94-283 (342)
51 PF03224 V-ATPase_H_N: V-ATPas 98.6 1.2E-06 2.7E-11 94.2 17.0 195 269-465 57-271 (312)
52 PF03224 V-ATPase_H_N: V-ATPas 98.6 1.7E-06 3.6E-11 93.3 17.7 225 226-452 56-303 (312)
53 TIGR02270 conserved hypothetic 98.5 1.8E-05 3.9E-10 87.2 24.1 240 226-545 55-296 (410)
54 KOG1824 TATA-binding protein-i 98.5 0.0005 1.1E-08 79.1 34.0 546 233-833 443-1033(1233)
55 KOG1062 Vesicle coat complex A 98.5 0.00045 9.8E-09 78.5 32.3 440 230-795 112-579 (866)
56 TIGR02270 conserved hypothetic 98.4 2.6E-05 5.7E-10 85.9 22.5 243 307-637 53-296 (410)
57 KOG1242 Protein containing ada 98.4 8.4E-05 1.8E-09 82.5 25.3 348 308-682 96-446 (569)
58 KOG1824 TATA-binding protein-i 98.4 0.00039 8.6E-09 79.9 29.3 411 226-686 612-1042(1233)
59 COG1413 FOG: HEAT repeat [Ener 98.4 4.7E-05 1E-09 83.3 21.9 221 472-791 43-268 (335)
60 KOG2759 Vacuolar H+-ATPase V1 98.4 0.00016 3.4E-09 76.5 24.2 316 226-544 66-437 (442)
61 KOG0213 Splicing factor 3b, su 98.3 0.0012 2.7E-08 74.0 31.8 258 391-683 800-1068(1172)
62 KOG1059 Vesicle coat complex A 98.3 0.0018 4E-08 72.7 33.1 179 391-588 182-365 (877)
63 KOG2160 Armadillo/beta-catenin 98.3 2.8E-05 6.1E-10 81.1 18.2 187 484-679 95-281 (342)
64 KOG0211 Protein phosphatase 2A 98.3 0.00025 5.4E-09 83.0 27.9 542 226-840 122-668 (759)
65 PF05536 Neurochondrin: Neuroc 98.3 0.00052 1.1E-08 78.9 29.1 382 268-682 6-441 (543)
66 COG5181 HSH155 U2 snRNP splice 98.3 0.00043 9.4E-09 76.0 26.3 256 517-837 605-871 (975)
67 KOG1060 Vesicle coat complex A 98.3 0.00064 1.4E-08 76.9 28.1 429 269-795 37-495 (968)
68 KOG2973 Uncharacterized conser 98.3 0.00013 2.8E-09 74.0 20.3 288 229-546 7-316 (353)
69 COG1413 FOG: HEAT repeat [Ener 98.3 0.0005 1.1E-08 75.2 27.1 250 349-680 43-304 (335)
70 COG5215 KAP95 Karyopherin (imp 98.2 0.0027 6E-08 69.4 31.0 419 319-797 16-480 (858)
71 KOG3678 SARM protein (with ste 98.2 3.5E-05 7.7E-10 81.5 16.4 274 507-794 171-450 (832)
72 KOG4646 Uncharacterized conser 98.2 1.3E-05 2.8E-10 70.9 10.7 118 270-388 19-139 (173)
73 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00046 9.9E-09 73.2 24.0 319 309-635 66-436 (442)
74 PF05536 Neurochondrin: Neuroc 98.2 0.0027 5.9E-08 73.1 32.1 410 226-660 6-460 (543)
75 KOG4413 26S proteasome regulat 98.1 0.0012 2.5E-08 67.5 24.1 327 192-524 91-460 (524)
76 KOG1789 Endocytosis protein RM 98.1 0.00089 1.9E-08 77.4 25.7 362 241-614 1741-2143(2235)
77 KOG3678 SARM protein (with ste 98.1 0.00021 4.5E-09 75.9 18.3 274 261-550 174-457 (832)
78 PF13646 HEAT_2: HEAT repeats; 98.1 1.3E-05 2.8E-10 68.6 8.1 86 653-792 1-88 (88)
79 PF14664 RICTOR_N: Rapamycin-i 98.1 0.0014 3E-08 71.6 25.2 305 226-543 26-362 (371)
80 KOG1789 Endocytosis protein RM 98.1 0.0011 2.3E-08 76.8 24.4 323 324-663 1741-2142(2235)
81 PF10165 Ric8: Guanine nucleot 98.0 0.0007 1.5E-08 76.2 22.6 268 287-557 2-349 (446)
82 KOG2973 Uncharacterized conser 98.0 0.00092 2E-08 68.0 20.6 251 311-571 6-297 (353)
83 KOG0212 Uncharacterized conser 98.0 0.00091 2E-08 73.1 21.5 347 307-679 83-443 (675)
84 KOG1242 Protein containing ada 98.0 0.003 6.4E-08 70.6 26.0 316 226-569 135-464 (569)
85 KOG1059 Vesicle coat complex A 98.0 0.0075 1.6E-07 68.0 28.5 412 226-680 145-577 (877)
86 KOG0212 Uncharacterized conser 97.9 0.00094 2E-08 73.0 19.8 307 185-503 126-446 (675)
87 KOG1060 Vesicle coat complex A 97.9 0.012 2.6E-07 67.0 28.9 390 311-797 38-459 (968)
88 KOG4646 Uncharacterized conser 97.9 0.00013 2.8E-09 64.8 9.8 116 347-465 14-130 (173)
89 KOG2259 Uncharacterized conser 97.8 0.00025 5.3E-09 78.7 12.9 258 474-793 200-472 (823)
90 PF00514 Arm: Armadillo/beta-c 97.8 3.6E-05 7.8E-10 55.1 4.4 40 380-419 2-41 (41)
91 PF13646 HEAT_2: HEAT repeats; 97.8 5.2E-05 1.1E-09 64.8 6.1 86 725-832 1-88 (88)
92 PF00514 Arm: Armadillo/beta-c 97.7 8.7E-05 1.9E-09 53.1 5.3 39 641-679 2-40 (41)
93 COG5215 KAP95 Karyopherin (imp 97.7 0.15 3.2E-06 56.4 35.2 537 231-820 100-693 (858)
94 KOG1517 Guanine nucleotide bin 97.7 0.00052 1.1E-08 79.7 13.6 186 533-754 487-673 (1387)
95 KOG1077 Vesicle coat complex A 97.6 0.17 3.7E-06 57.4 31.5 282 229-545 115-433 (938)
96 KOG1062 Vesicle coat complex A 97.6 0.078 1.7E-06 61.0 29.3 270 450-788 123-406 (866)
97 KOG0211 Protein phosphatase 2A 97.6 0.0085 1.8E-07 70.4 22.6 408 281-754 252-666 (759)
98 COG5240 SEC21 Vesicle coat com 97.6 0.1 2.3E-06 57.6 28.7 369 298-752 171-555 (898)
99 KOG4413 26S proteasome regulat 97.6 0.041 8.9E-07 56.5 24.1 273 326-610 61-353 (524)
100 KOG1061 Vesicle coat complex A 97.6 0.01 2.2E-07 68.0 22.1 281 267-579 13-299 (734)
101 KOG1077 Vesicle coat complex A 97.6 0.037 8E-07 62.4 25.7 277 450-786 127-423 (938)
102 KOG2259 Uncharacterized conser 97.5 0.0016 3.4E-08 72.5 14.8 247 272-543 203-473 (823)
103 KOG2734 Uncharacterized conser 97.5 0.014 3E-07 62.3 20.8 237 202-441 103-371 (536)
104 KOG1061 Vesicle coat complex A 97.5 0.025 5.3E-07 64.9 23.4 256 269-548 51-311 (734)
105 PF12348 CLASP_N: CLASP N term 97.4 0.0014 2.9E-08 67.4 12.0 187 359-550 17-211 (228)
106 KOG1078 Vesicle coat complex C 97.3 0.17 3.8E-06 58.1 27.7 348 318-752 182-532 (865)
107 KOG0915 Uncharacterized conser 97.3 0.072 1.6E-06 65.3 25.5 397 309-755 862-1309(1702)
108 KOG1943 Beta-tubulin folding c 97.3 0.31 6.7E-06 58.2 29.5 495 226-797 342-882 (1133)
109 PF14664 RICTOR_N: Rapamycin-i 97.2 0.039 8.5E-07 60.4 21.2 225 274-502 33-270 (371)
110 PF10165 Ric8: Guanine nucleot 97.2 0.02 4.4E-07 64.6 19.3 243 235-502 42-338 (446)
111 KOG1943 Beta-tubulin folding c 97.1 0.56 1.2E-05 56.1 29.6 340 307-680 340-705 (1133)
112 KOG0567 HEAT repeat-containing 97.1 0.12 2.6E-06 52.0 20.6 224 269-544 5-248 (289)
113 COG5181 HSH155 U2 snRNP splice 97.1 0.045 9.7E-07 60.8 18.9 252 227-503 606-872 (975)
114 KOG0567 HEAT repeat-containing 97.0 0.07 1.5E-06 53.7 18.4 89 652-794 188-278 (289)
115 COG5369 Uncharacterized conser 96.9 0.016 3.6E-07 63.2 14.0 166 262-428 426-603 (743)
116 smart00185 ARM Armadillo/beta- 96.9 0.002 4.4E-08 45.8 4.8 38 381-418 3-40 (41)
117 PF12348 CLASP_N: CLASP N term 96.8 0.02 4.3E-07 58.7 13.6 184 230-420 12-207 (228)
118 smart00185 ARM Armadillo/beta- 96.8 0.0025 5.5E-08 45.3 4.8 39 298-337 3-41 (41)
119 KOG2734 Uncharacterized conser 96.7 0.51 1.1E-05 50.9 23.1 240 285-526 103-371 (536)
120 COG5240 SEC21 Vesicle coat com 96.7 0.45 9.8E-06 52.8 23.1 285 351-681 266-556 (898)
121 KOG1058 Vesicle coat complex C 96.7 0.53 1.1E-05 54.0 24.0 94 487-592 374-467 (948)
122 PF05659 RPW8: Arabidopsis bro 96.6 0.05 1.1E-06 50.9 13.2 88 32-123 31-128 (147)
123 PF12460 MMS19_C: RNAPII trans 96.6 1.2 2.6E-05 50.1 26.9 354 392-798 1-396 (415)
124 KOG4535 HEAT and armadillo rep 96.6 0.4 8.7E-06 52.1 20.9 484 307-837 45-604 (728)
125 COG5231 VMA13 Vacuolar H+-ATPa 96.5 0.12 2.6E-06 53.2 16.1 227 316-544 157-427 (432)
126 KOG1240 Protein kinase contain 96.5 0.11 2.4E-06 62.2 17.9 271 484-804 435-733 (1431)
127 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0051 1.1E-07 47.1 4.5 55 363-417 1-55 (55)
128 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0089 1.9E-07 45.8 5.2 54 623-678 2-55 (55)
129 COG5096 Vesicle coat complex, 96.2 0.043 9.3E-07 64.1 12.1 138 652-835 56-194 (757)
130 COG5369 Uncharacterized conser 96.1 0.043 9.3E-07 60.1 11.0 188 574-798 404-596 (743)
131 KOG0915 Uncharacterized conser 96.1 6.3 0.00014 49.4 30.1 301 309-682 999-1308(1702)
132 KOG2062 26S proteasome regulat 96.0 4 8.8E-05 47.1 28.8 62 723-795 554-617 (929)
133 KOG1517 Guanine nucleotide bin 96.0 0.1 2.2E-06 61.6 14.1 205 223-428 510-741 (1387)
134 KOG4535 HEAT and armadillo rep 96.0 2.1 4.6E-05 46.8 22.5 184 488-680 407-603 (728)
135 KOG1240 Protein kinase contain 95.8 0.56 1.2E-05 56.7 19.0 252 280-546 437-726 (1431)
136 PF11841 DUF3361: Domain of un 95.8 0.51 1.1E-05 44.4 15.2 122 425-548 5-134 (160)
137 PF04078 Rcd1: Cell differenti 95.7 0.85 1.8E-05 46.5 17.7 200 279-513 8-227 (262)
138 PF11841 DUF3361: Domain of un 95.7 0.19 4.1E-06 47.2 12.1 119 385-504 6-134 (160)
139 PF12460 MMS19_C: RNAPII trans 95.7 3.5 7.6E-05 46.4 24.9 193 350-556 190-405 (415)
140 KOG1248 Uncharacterized conser 95.7 7.6 0.00016 47.5 28.8 222 318-548 664-901 (1176)
141 COG5231 VMA13 Vacuolar H+-ATPa 95.6 0.27 5.9E-06 50.7 13.4 258 482-796 159-428 (432)
142 KOG4151 Myosin assembly protei 95.5 0.2 4.3E-06 58.0 13.9 208 338-556 493-709 (748)
143 PF09759 Atx10homo_assoc: Spin 95.5 0.062 1.3E-06 46.5 7.4 59 489-549 3-63 (102)
144 KOG1058 Vesicle coat complex C 95.4 1.4 3E-05 50.8 19.3 344 356-797 106-464 (948)
145 KOG3036 Protein involved in ce 95.2 3.8 8.2E-05 41.1 21.9 209 269-513 28-256 (293)
146 PF12755 Vac14_Fab1_bd: Vacuol 95.1 0.25 5.3E-06 42.8 10.1 67 517-586 28-94 (97)
147 PF05004 IFRD: Interferon-rela 95.0 1.6 3.4E-05 46.8 18.0 190 351-544 45-256 (309)
148 PF04063 DUF383: Domain of unk 94.9 0.14 3.1E-06 50.3 9.1 124 320-443 7-159 (192)
149 PF12717 Cnd1: non-SMC mitotic 94.9 0.11 2.3E-06 51.0 8.1 92 664-797 1-93 (178)
150 PF02985 HEAT: HEAT repeat; I 94.8 0.043 9.4E-07 36.3 3.6 29 652-680 1-29 (31)
151 KOG1078 Vesicle coat complex C 94.5 13 0.00028 43.6 27.6 97 736-835 423-531 (865)
152 KOG3036 Protein involved in ce 94.4 0.83 1.8E-05 45.6 12.7 143 284-427 97-255 (293)
153 KOG4464 Signaling protein RIC- 94.2 7 0.00015 42.1 19.8 266 238-541 110-428 (532)
154 PRK14707 hypothetical protein; 94.2 26 0.00055 45.9 42.3 64 734-800 889-954 (2710)
155 PF09759 Atx10homo_assoc: Spin 94.1 0.19 4.1E-06 43.6 6.8 64 366-429 3-70 (102)
156 COG5096 Vesicle coat complex, 93.9 0.52 1.1E-05 55.4 12.2 70 651-753 127-196 (757)
157 PF05004 IFRD: Interferon-rela 93.9 3 6.5E-05 44.7 17.2 189 393-586 46-255 (309)
158 KOG2274 Predicted importin 9 [ 93.8 14 0.0003 44.0 22.9 230 318-553 460-697 (1005)
159 PF02985 HEAT: HEAT repeat; I 93.8 0.08 1.7E-06 35.0 3.2 28 725-752 2-29 (31)
160 KOG1832 HIV-1 Vpr-binding prot 93.4 1.5 3.2E-05 51.3 14.1 349 283-653 370-787 (1516)
161 PF11698 V-ATPase_H_C: V-ATPas 93.2 0.21 4.5E-06 44.5 5.8 72 723-796 43-115 (119)
162 PF11698 V-ATPase_H_C: V-ATPas 93.2 0.24 5.3E-06 44.1 6.1 92 164-255 18-116 (119)
163 PF12755 Vac14_Fab1_bd: Vacuol 93.1 0.35 7.7E-06 41.8 7.0 62 472-538 27-90 (97)
164 PF08569 Mo25: Mo25-like; Int 92.7 9.5 0.00021 41.2 18.7 196 302-503 71-285 (335)
165 KOG4653 Uncharacterized conser 92.7 3.1 6.7E-05 48.9 15.5 221 353-583 731-959 (982)
166 PF13764 E3_UbLigase_R4: E3 ub 92.2 20 0.00042 43.4 22.1 233 306-546 115-407 (802)
167 PF04078 Rcd1: Cell differenti 92.2 4.9 0.00011 41.1 14.6 190 239-429 9-228 (262)
168 KOG2999 Regulator of Rac1, req 91.8 5.2 0.00011 44.7 15.1 155 393-549 86-246 (713)
169 PF12717 Cnd1: non-SMC mitotic 91.7 11 0.00023 36.9 16.3 93 403-502 1-93 (178)
170 KOG1248 Uncharacterized conser 91.5 44 0.00094 41.4 27.5 219 360-586 665-896 (1176)
171 KOG4151 Myosin assembly protei 91.5 2.8 6E-05 49.0 13.4 204 506-752 494-699 (748)
172 KOG0414 Chromosome condensatio 91.2 46 0.001 41.1 30.1 142 602-794 920-1062(1251)
173 PF05918 API5: Apoptosis inhib 91.1 12 0.00026 43.0 17.9 172 395-588 28-207 (556)
174 PF13764 E3_UbLigase_R4: E3 ub 91.0 44 0.00095 40.5 23.2 270 347-662 82-387 (802)
175 PF08569 Mo25: Mo25-like; Int 90.7 12 0.00026 40.5 16.7 197 264-465 73-285 (335)
176 KOG2025 Chromosome condensatio 90.6 7.1 0.00015 45.1 15.1 104 474-588 87-190 (892)
177 PF07814 WAPL: Wings apart-lik 90.5 7.4 0.00016 42.8 15.4 91 268-359 22-116 (361)
178 PF04063 DUF383: Domain of unk 90.5 2 4.4E-05 42.2 9.8 118 283-400 12-157 (192)
179 PF05918 API5: Apoptosis inhib 90.1 2.4 5.2E-05 48.5 11.2 122 360-498 33-159 (556)
180 PRK14707 hypothetical protein; 89.7 83 0.0018 41.7 43.3 157 267-425 331-494 (2710)
181 KOG2274 Predicted importin 9 [ 89.4 56 0.0012 39.2 23.7 276 312-592 494-784 (1005)
182 PF07814 WAPL: Wings apart-lik 89.4 13 0.00029 40.8 16.3 93 184-277 22-116 (361)
183 PF12719 Cnd3: Nuclear condens 89.1 4.5 9.7E-05 43.2 12.1 167 479-663 34-209 (298)
184 KOG1020 Sister chromatid cohes 88.8 80 0.0017 40.3 35.1 142 226-378 817-960 (1692)
185 KOG2999 Regulator of Rac1, req 88.5 8.1 0.00018 43.3 13.2 153 350-503 84-244 (713)
186 KOG2062 26S proteasome regulat 87.8 46 0.00099 39.0 18.9 133 390-544 519-652 (929)
187 KOG2611 Neurochondrin/leucine- 87.6 30 0.00064 38.3 16.6 129 313-443 16-164 (698)
188 PF11701 UNC45-central: Myosin 86.2 5.7 0.00012 37.9 9.7 134 449-585 20-156 (157)
189 KOG1967 DNA repair/transcripti 85.6 6.7 0.00015 46.6 11.3 147 349-496 867-1019(1030)
190 KOG2956 CLIP-associating prote 85.4 34 0.00074 37.9 15.7 146 517-679 330-476 (516)
191 PF12719 Cnd3: Nuclear condens 85.0 4.1 9E-05 43.5 9.1 102 658-798 34-145 (298)
192 KOG2032 Uncharacterized conser 84.7 73 0.0016 35.7 19.6 73 514-587 252-328 (533)
193 PF08045 CDC14: Cell division 84.6 11 0.00023 38.9 11.2 97 366-463 108-207 (257)
194 smart00638 LPD_N Lipoprotein N 84.6 30 0.00066 40.8 16.9 136 653-834 395-543 (574)
195 KOG2032 Uncharacterized conser 84.4 75 0.0016 35.6 19.0 141 400-544 268-415 (533)
196 KOG2025 Chromosome condensatio 84.0 35 0.00076 39.7 15.6 107 349-464 85-191 (892)
197 KOG2611 Neurochondrin/leucine- 83.7 38 0.00082 37.6 15.0 137 570-741 22-170 (698)
198 PF06371 Drf_GBD: Diaphanous G 83.6 6.1 0.00013 38.8 9.0 76 261-336 101-186 (187)
199 COG5218 YCG1 Chromosome conden 82.9 51 0.0011 37.6 15.9 171 475-679 94-265 (885)
200 PF11701 UNC45-central: Myosin 82.7 21 0.00046 33.9 11.9 134 236-375 16-156 (157)
201 KOG2956 CLIP-associating prote 81.1 98 0.0021 34.5 17.0 145 392-546 331-478 (516)
202 PF08045 CDC14: Cell division 80.9 16 0.00035 37.6 10.8 102 532-638 107-208 (257)
203 KOG1243 Protein kinase [Genera 80.7 18 0.00039 42.0 12.0 246 279-543 267-513 (690)
204 KOG3665 ZYG-1-like serine/thre 80.2 1.3E+02 0.0028 36.3 19.6 174 413-610 494-676 (699)
205 PF10363 DUF2435: Protein of u 80.1 11 0.00023 32.3 7.9 73 474-550 5-77 (92)
206 PF12031 DUF3518: Domain of un 79.3 8.4 0.00018 38.8 7.9 93 405-532 139-232 (257)
207 KOG1967 DNA repair/transcripti 79.2 15 0.00033 43.8 11.0 149 218-372 862-1018(1030)
208 COG5209 RCD1 Uncharacterized p 79.2 34 0.00073 34.0 11.7 99 407-544 117-217 (315)
209 KOG3665 ZYG-1-like serine/thre 79.0 1.3E+02 0.0028 36.3 19.2 190 331-539 494-691 (699)
210 KOG1820 Microtubule-associated 78.8 49 0.0011 40.2 15.5 190 352-549 256-447 (815)
211 COG5098 Chromosome condensatio 78.8 6.2 0.00013 45.3 7.5 113 725-841 301-420 (1128)
212 PF08324 PUL: PUL domain; Int 78.8 34 0.00073 35.8 13.1 144 286-429 83-241 (268)
213 COG5098 Chromosome condensatio 78.5 1.4E+02 0.0031 34.9 18.4 172 153-339 854-1039(1128)
214 PF06371 Drf_GBD: Diaphanous G 77.5 8.4 0.00018 37.8 7.6 77 424-500 100-186 (187)
215 COG5116 RPN2 26S proteasome re 76.8 9.1 0.0002 42.9 8.0 101 600-754 550-652 (926)
216 KOG1820 Microtubule-associated 76.7 43 0.00094 40.6 14.2 190 518-753 255-444 (815)
217 PF01347 Vitellogenin_N: Lipop 76.2 52 0.0011 39.2 15.3 175 261-459 386-585 (618)
218 KOG1991 Nuclear transport rece 76.2 2E+02 0.0043 35.3 35.8 421 276-754 14-534 (1010)
219 smart00638 LPD_N Lipoprotein N 75.7 1.1E+02 0.0023 36.2 17.5 170 559-792 358-541 (574)
220 PF03130 HEAT_PBS: PBS lyase H 75.2 2.7 5.9E-05 26.6 2.2 26 739-777 1-26 (27)
221 KOG0414 Chromosome condensatio 75.1 2.3E+02 0.0049 35.5 32.7 142 560-754 921-1066(1251)
222 PF12031 DUF3518: Domain of un 75.1 6.7 0.00015 39.5 5.9 82 282-363 140-230 (257)
223 KOG0301 Phospholipase A2-activ 74.9 85 0.0018 36.5 14.9 163 275-444 553-729 (745)
224 PF14668 RICTOR_V: Rapamycin-i 74.5 10 0.00022 30.7 5.8 66 325-390 4-70 (73)
225 COG5116 RPN2 26S proteasome re 73.2 9.9 0.00022 42.7 7.1 58 724-792 552-611 (926)
226 PF14668 RICTOR_V: Rapamycin-i 73.2 13 0.00028 30.2 6.1 65 367-431 5-70 (73)
227 PF08167 RIX1: rRNA processing 72.8 38 0.00082 32.5 10.5 70 517-586 26-95 (165)
228 PF12830 Nipped-B_C: Sister ch 72.6 62 0.0013 31.8 12.2 71 474-551 10-80 (187)
229 KOG4653 Uncharacterized conser 72.6 62 0.0014 38.7 13.5 179 396-587 733-917 (982)
230 PF13251 DUF4042: Domain of un 69.6 50 0.0011 32.2 10.5 160 531-754 1-176 (182)
231 COG5209 RCD1 Uncharacterized p 69.5 18 0.0004 35.8 7.2 141 284-425 118-274 (315)
232 PF11707 Npa1: Ribosome 60S bi 69.4 1.7E+02 0.0037 31.7 15.8 155 269-423 58-241 (330)
233 KOG1788 Uncharacterized conser 69.3 1E+02 0.0023 37.6 14.3 249 207-462 666-981 (2799)
234 PF12530 DUF3730: Protein of u 68.5 1.4E+02 0.0031 30.4 17.1 139 434-588 3-151 (234)
235 PF06025 DUF913: Domain of Unk 68.3 34 0.00073 37.8 10.1 166 581-779 6-208 (379)
236 PF01347 Vitellogenin_N: Lipop 68.1 1.4E+02 0.0031 35.4 16.5 171 389-586 394-587 (618)
237 KOG2933 Uncharacterized conser 66.9 46 0.001 35.0 9.9 141 518-677 90-231 (334)
238 PF11791 Aconitase_B_N: Aconit 66.7 10 0.00023 35.2 4.8 25 810-834 97-121 (154)
239 PF08167 RIX1: rRNA processing 65.5 38 0.00082 32.5 8.8 105 724-834 26-141 (165)
240 COG5218 YCG1 Chromosome conden 65.1 36 0.00077 38.7 9.3 108 307-424 90-201 (885)
241 PF08324 PUL: PUL domain; Int 64.7 1.3E+02 0.0029 31.2 13.7 115 402-518 122-246 (268)
242 KOG2137 Protein kinase [Signal 64.7 1.4E+02 0.0031 35.2 14.2 136 389-531 388-523 (700)
243 PF06025 DUF913: Domain of Unk 64.2 1.6E+02 0.0034 32.7 14.3 123 559-687 107-239 (379)
244 cd03568 VHS_STAM VHS domain fa 63.0 36 0.00079 31.8 7.8 73 472-545 37-110 (144)
245 cd03561 VHS VHS domain family; 62.6 45 0.00098 30.7 8.4 73 472-545 37-112 (133)
246 PF12530 DUF3730: Protein of u 62.3 1.9E+02 0.0041 29.6 17.6 138 310-464 2-152 (234)
247 PF08216 CTNNBL: Catenin-beta- 61.2 8.7 0.00019 33.6 3.1 43 283-326 63-105 (108)
248 PF14225 MOR2-PAG1_C: Cell mor 60.3 2.2E+02 0.0048 29.7 19.0 53 768-820 189-241 (262)
249 cd03569 VHS_Hrs_Vps27p VHS dom 59.9 49 0.0011 30.9 8.1 68 517-584 42-110 (142)
250 cd03561 VHS VHS domain family; 59.9 49 0.0011 30.5 8.1 69 517-585 38-109 (133)
251 cd03568 VHS_STAM VHS domain fa 59.4 52 0.0011 30.8 8.2 69 517-585 38-107 (144)
252 KOG1788 Uncharacterized conser 59.2 4.4E+02 0.0095 32.8 22.6 468 309-841 467-987 (2799)
253 PF06685 DUF1186: Protein of u 58.5 1E+02 0.0022 31.8 10.7 86 514-612 71-161 (249)
254 PF11707 Npa1: Ribosome 60S bi 57.8 2.1E+02 0.0046 30.9 13.9 154 227-380 58-239 (330)
255 cd03569 VHS_Hrs_Vps27p VHS dom 55.9 58 0.0013 30.4 7.9 73 472-545 41-114 (142)
256 KOG1991 Nuclear transport rece 55.8 4.8E+02 0.01 32.2 23.2 116 307-424 409-537 (1010)
257 smart00567 EZ_HEAT E-Z type HE 55.5 13 0.00028 24.0 2.5 28 738-778 2-29 (30)
258 PF12830 Nipped-B_C: Sister ch 54.4 33 0.00071 33.7 6.3 64 725-797 10-75 (187)
259 cd03572 ENTH_epsin_related ENT 54.3 49 0.0011 29.9 6.8 70 473-543 39-117 (122)
260 cd03567 VHS_GGA VHS domain fam 54.1 63 0.0014 30.0 7.7 72 472-544 38-115 (139)
261 PF11865 DUF3385: Domain of un 53.1 79 0.0017 30.2 8.5 144 307-461 9-155 (160)
262 PF14225 MOR2-PAG1_C: Cell mor 52.9 2.9E+02 0.0063 28.8 16.1 66 390-462 188-253 (262)
263 PF13251 DUF4042: Domain of un 52.7 1.7E+02 0.0037 28.6 10.8 107 477-586 45-172 (182)
264 PF08506 Cse1: Cse1; InterPro 52.5 3.6E+02 0.0078 29.7 18.4 150 512-675 206-370 (370)
265 PF12074 DUF3554: Domain of un 50.7 3.5E+02 0.0075 29.3 14.4 193 350-550 23-240 (339)
266 KOG1832 HIV-1 Vpr-binding prot 50.2 5.6E+02 0.012 31.3 20.9 61 318-380 363-423 (1516)
267 smart00288 VHS Domain present 49.5 86 0.0019 28.8 7.9 67 517-583 38-106 (133)
268 PF00790 VHS: VHS domain; Int 49.1 90 0.0019 29.0 8.1 67 517-583 43-113 (140)
269 cd03567 VHS_GGA VHS domain fam 48.8 99 0.0021 28.7 8.1 65 517-581 39-109 (139)
270 KOG2933 Uncharacterized conser 48.4 74 0.0016 33.5 7.8 129 280-417 102-232 (334)
271 KOG0413 Uncharacterized conser 44.6 7E+02 0.015 30.9 26.0 105 651-798 968-1075(1529)
272 KOG1243 Protein kinase [Genera 44.0 2.4E+02 0.0052 33.2 11.7 179 225-415 330-511 (690)
273 PF14500 MMS19_N: Dos2-interac 43.9 4E+02 0.0086 27.8 17.4 218 436-679 4-236 (262)
274 KOG2137 Protein kinase [Signal 43.6 1E+02 0.0022 36.3 8.7 129 307-440 388-517 (700)
275 KOG1566 Conserved protein Mo25 43.5 4.3E+02 0.0094 28.1 17.6 208 344-555 74-298 (342)
276 PF00790 VHS: VHS domain; Int 42.7 1.5E+02 0.0033 27.5 8.5 73 472-545 42-118 (140)
277 PF10363 DUF2435: Protein of u 42.0 64 0.0014 27.5 5.4 83 351-441 5-87 (92)
278 KOG1949 Uncharacterized conser 41.9 6.5E+02 0.014 29.9 14.4 155 340-500 165-330 (1005)
279 smart00288 VHS Domain present 41.5 2.8E+02 0.0061 25.4 10.1 72 472-544 37-110 (133)
280 PF11865 DUF3385: Domain of un 40.1 2.5E+02 0.0054 26.7 9.7 141 350-499 11-155 (160)
281 PF14726 RTTN_N: Rotatin, an a 39.1 2.4E+02 0.0052 24.5 8.3 61 306-366 28-88 (98)
282 PF07923 N1221: N1221-like pro 36.7 51 0.0011 35.0 4.9 56 722-777 59-126 (293)
283 PF06685 DUF1186: Protein of u 34.8 5.3E+02 0.012 26.6 13.5 98 430-548 30-145 (249)
284 PF08506 Cse1: Cse1; InterPro 34.1 6.7E+02 0.014 27.7 13.1 129 405-540 226-370 (370)
285 PF08216 CTNNBL: Catenin-beta- 33.5 66 0.0014 28.3 4.1 38 408-445 64-101 (108)
286 KOG1566 Conserved protein Mo25 33.0 6.3E+02 0.014 26.9 18.5 199 221-421 75-288 (342)
287 PF10521 DUF2454: Protein of u 32.0 5.1E+02 0.011 27.2 11.6 52 389-440 118-171 (282)
288 PF12397 U3snoRNP10: U3 small 31.2 3.6E+02 0.0078 24.0 8.9 31 652-682 7-38 (121)
289 cd00197 VHS_ENTH_ANTH VHS, ENT 30.4 2.7E+02 0.0059 24.6 7.9 69 473-542 38-112 (115)
290 PF04388 Hamartin: Hamartin pr 30.4 7E+02 0.015 30.0 13.4 144 390-554 4-149 (668)
291 PF13001 Ecm29: Proteasome sta 30.3 5.2E+02 0.011 29.9 12.1 153 448-613 251-426 (501)
292 PF14726 RTTN_N: Rotatin, an a 30.2 3.6E+02 0.0079 23.3 8.3 66 470-538 28-93 (98)
293 PF14666 RICTOR_M: Rapamycin-i 29.1 4.2E+02 0.0091 26.9 9.7 122 369-500 84-224 (226)
294 PF11791 Aconitase_B_N: Aconit 28.5 1.7E+02 0.0037 27.5 6.1 27 474-500 96-122 (154)
295 PF10274 ParcG: Parkin co-regu 27.9 5E+02 0.011 25.4 9.5 71 350-420 39-110 (183)
296 PLN03205 ATR interacting prote 27.4 2.5E+02 0.0055 30.6 7.9 111 185-298 325-449 (652)
297 PF12765 Cohesin_HEAT: HEAT re 27.2 82 0.0018 22.4 3.1 31 466-496 12-42 (42)
298 COG5656 SXM1 Importin, protein 27.0 1.2E+03 0.025 28.2 18.0 286 286-586 389-709 (970)
299 PF04499 SAPS: SIT4 phosphatas 26.7 3.6E+02 0.0078 30.9 9.7 93 642-751 53-147 (475)
300 PF06012 DUF908: Domain of Unk 24.8 2.6E+02 0.0057 30.2 8.0 64 365-428 238-306 (329)
301 KOG0301 Phospholipase A2-activ 24.8 1.2E+03 0.026 27.6 15.6 159 239-401 558-727 (745)
302 PF09324 DUF1981: Domain of un 23.7 2.5E+02 0.0053 23.6 5.9 65 721-792 15-84 (86)
303 KOG1020 Sister chromatid cohes 23.4 1.8E+03 0.039 29.1 34.9 138 187-338 820-961 (1692)
304 KOG2038 CAATT-binding transcri 23.1 1.4E+03 0.03 27.7 14.0 69 473-548 305-373 (988)
305 PF04499 SAPS: SIT4 phosphatas 22.8 8.1E+02 0.017 28.1 11.6 40 506-545 52-92 (475)
306 PF06012 DUF908: Domain of Unk 22.1 2.5E+02 0.0054 30.4 7.2 60 406-465 238-299 (329)
307 PF12726 SEN1_N: SEN1 N termin 21.9 7E+02 0.015 30.4 11.7 107 310-419 443-553 (727)
308 KOG1848 Uncharacterized conser 21.8 1.4E+03 0.031 29.7 13.6 97 484-587 854-957 (1610)
309 PF14663 RasGEF_N_2: Rapamycin 21.5 1.4E+02 0.0031 26.6 4.3 38 309-346 9-46 (115)
310 cd03572 ENTH_epsin_related ENT 21.2 2.8E+02 0.006 25.1 6.0 40 517-556 39-78 (122)
311 PLN02742 Probable galacturonos 21.0 7.3E+02 0.016 28.6 10.4 93 6-101 69-164 (534)
312 PF14663 RasGEF_N_2: Rapamycin 20.4 2.1E+02 0.0046 25.5 5.1 39 391-429 9-47 (115)
313 PLN02718 Probable galacturonos 20.2 7.1E+02 0.015 29.2 10.2 88 9-101 163-253 (603)
314 KOG2676 Uncharacterized conser 20.1 1.4E+02 0.003 32.0 4.3 62 205-266 378-441 (478)
315 PF09450 DUF2019: Domain of un 20.0 1E+02 0.0022 27.0 2.8 56 726-794 50-105 (106)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8.7e-52 Score=504.63 Aligned_cols=612 Identities=20% Similarity=0.236 Sum_probs=514.3
Q ss_pred ccHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCCcChHHHhh-CCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhh
Q 003146 183 LGIDDVMLQLKHG--DDKNLKFALLELRELISAKTVDSEWINE-AEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADY 259 (844)
Q Consensus 183 ~~i~~lv~~L~~~--~~~~~~~a~~~l~~L~~~~~~~~~~i~~-~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~ 259 (844)
..+..+++.|.++ +...+..++..+..+.+.++.+|..+.+ .|++|.|+.+|.+++...+..++.+|.++. ..+++
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS-~~e~n 91 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLC-KEEDL 91 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHH
Confidence 3477888888876 5567788899999999999888888875 789999999999999999999999999996 45778
Q ss_pred HHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC---hhHHHHhhhhCcHHHHHHhhcCC---ChHHHHHHHHHH
Q 003146 260 KEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP---AVWRRIGRIQGCIVMLVSMLSGN---DPVASHDAGKLL 332 (844)
Q Consensus 260 ~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~s~---d~~~~~~A~~~L 332 (844)
+..++..|+++.|+.+|.+ +.+.|+.|+.+|..|+.++ .++..++...|+||+|+.++.+. |..+++.++.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 8888899999999999988 4678999999999999874 34545554599999999999875 344677889999
Q ss_pred HHhccCCccHH-HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcC-CHHHHHH
Q 003146 333 NALSSNTQNAL-HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVG-KLEAKLS 409 (844)
Q Consensus 333 ~nLs~~~~~~~-~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~ 409 (844)
.||+.+.+++. .+++.|+++.++++|+++++..+.+|+++|.+++.+ ++.+..+.+.|+||.|+++|+++ ++.+|+.
T Consensus 172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence 99999888864 567999999999999999999999999999988876 57899999999999999999875 4589999
Q ss_pred HHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCc------chhhHHHHHHHHHHHhcCh-h---------------
Q 003146 410 ALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSV------LMTLREPASAILARIAQSE-S--------------- 466 (844)
Q Consensus 410 A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~------~~~l~~~a~~~L~~l~~~~-~--------------- 466 (844)
|+++|+||+.+ ++++..+++.|+||+|++++..+..+ ...+++.|.|+|.|++.+. .
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence 99999999986 67899999999999999999754421 2346899999999988741 0
Q ss_pred -----------hh--------------------------------------------------------cccchHHHHHH
Q 003146 467 -----------IL--------------------------------------------------------VNKDVAQQMLS 479 (844)
Q Consensus 467 -----------~l--------------------------------------------------------~~~~~i~~Lv~ 479 (844)
++ .+.++++.|+.
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~ 411 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence 00 01122334455
Q ss_pred hhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhh
Q 003146 480 LLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKY 559 (844)
Q Consensus 480 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~ 559 (844)
++..++.++|+.++++|.+||.++ .+.++.+.+.|+++.|+++|.+++..+++.|+++|++++...++........++
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~--~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGK--GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 555566788999999999999886 788999999999999999999999999999999999998766655555666779
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC
Q 003146 560 LNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS 639 (844)
Q Consensus 560 l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~ 639 (844)
++.|+++|. +++..++..|+++|+|++.++.+.+..+.+.|+++.|+++|++++. ..++.++++|.+++...
T Consensus 490 IP~LV~LL~-s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~-------~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 490 IPPLVQLLE-TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP-------KGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH-------HHHHHHHHHHHHHHhcc
Confidence 999999998 5788999999999999998777778888899999999999988753 46789999999986443
Q ss_pred CHHH---------------H---------------------HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCc
Q 003146 640 DKKL---------------Q---------------------QYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSL 683 (844)
Q Consensus 640 ~~~~---------------~---------------------~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~ 683 (844)
+.+. + ......|++|.|+++++++++.+|+.|+++|.++..+..
T Consensus 562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence 2211 1 011246899999999999999999999999999997665
Q ss_pred cccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHH
Q 003146 684 SLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYL 763 (844)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i 763 (844)
..+ ..++.+|+|+||+.+|.+++.+++..|++||.++..... +.....+
T Consensus 642 d~~------------------------------~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~ 690 (2102)
T PLN03200 642 DLC------------------------------ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY 690 (2102)
T ss_pred HHH------------------------------HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 533 567889999999999999999999999999999997543 2344566
Q ss_pred HhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccc-cchhHHhhhhcCCCCchHHHHHHHHHHhh
Q 003146 764 AKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGES-AQVVLIDLAQNGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 764 ~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~-a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~ 836 (844)
.+.|+|+||+++|.+++..+++.|+.+|++|+...+.+..+... +..+|++++++|++..|+.|+.+|.+|-.
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999888777654 35799999999999999999999999853
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.5e-49 Score=480.96 Aligned_cols=614 Identities=18% Similarity=0.176 Sum_probs=499.1
Q ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcC--hhhH-
Q 003146 184 GIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASEN--ADYK- 260 (844)
Q Consensus 184 ~i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~--~~~~- 260 (844)
.++.++.+|.+++...+..++..+.+++.++. ++..+...|.+|.++++|++++...+..+..+|.+|+... +.++
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~-nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED-LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH-HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 48999999999988888888888999998754 4566667899999999999999999999999999998765 4444
Q ss_pred HHHhcCCcHHHHHHHhcCCH----HHHHHHHHHHHHccCCChhHH-HHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q 003146 261 EKMANVGSLSALVKSLTRDV----EEQREAVGLLLDLSDLPAVWR-RIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNAL 335 (844)
Q Consensus 261 ~~i~~~g~i~~Lv~~L~~~~----~~~~~A~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nL 335 (844)
..+...|+++.|+.+|.++. -.+..++.+|.+|+.+++++. .+.+ .|+||.|+.+|+++++..+.+|+++|.++
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe-aGaVp~LV~LLsS~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE-AGGVDILVKLLSSGNSDAQANAASLLARL 216 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44568999999999998842 245678899999999987764 4565 99999999999999999999999999888
Q ss_pred ccC-CccHHHHHHcCChHHHHHHhccCC-HHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCH--------
Q 003146 336 SSN-TQNALHMAEAGYFKPLVQYLKEGS-DMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKL-------- 404 (844)
Q Consensus 336 s~~-~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-------- 404 (844)
+.+ ++.+..+++.|+++.|+++|++++ ..+|.+|+++|.+|+.+ ++++..+.+.|+||+|++++..++.
T Consensus 217 ass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~ 296 (2102)
T PLN03200 217 MMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFA 296 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccc
Confidence 764 668999999999999999998765 58899999999999986 5889999999999999999986543
Q ss_pred -HHHHHHHHHHHHhhcCccc--------------HHH-----------------------HHHc-CChHHHHHHhhccCC
Q 003146 405 -EAKLSALNALQNLSLLAEN--------------IQR-----------------------LVIS-GIVSPLLQLLFSVTS 445 (844)
Q Consensus 405 -~~~~~A~~aL~nLs~~~~~--------------~~~-----------------------i~~~-g~v~~Lv~lL~~~~~ 445 (844)
..++.|+++|.|||.+... ... +++. .+++.|+.++++.++
T Consensus 297 ~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p 376 (2102)
T PLN03200 297 QALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDT 376 (2102)
T ss_pred hHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCC
Confidence 3589999999999874110 000 0111 122445555543321
Q ss_pred c---------------------------------------chhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhc
Q 003146 446 V---------------------------------------LMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLN 482 (844)
Q Consensus 446 ~---------------------------------------~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~ 482 (844)
. ...+++.+++.|++++.++ ..+...|+++.|+++|.
T Consensus 377 ~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~ 456 (2102)
T PLN03200 377 KLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG 456 (2102)
T ss_pred chhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc
Confidence 1 1346788888899998774 45677889999999999
Q ss_pred cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHh-chhhHH
Q 003146 483 LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQL-GDKYLN 561 (844)
Q Consensus 483 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l-~~~~l~ 561 (844)
++++..|+.++++|.+++..+ .+.+..+.+.|++|+|+++|.++++++++.|+++|.|++.+. +.+...+ ..+.++
T Consensus 457 s~s~~iQ~~A~~~L~nLa~~n--denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIp 533 (2102)
T PLN03200 457 LSSEQQQEYAVALLAILTDEV--DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVP 533 (2102)
T ss_pred CCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHH
Confidence 999999999999999999865 678899999999999999999999999999999999999754 3344444 456899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCCCCH----------------H---------------------HHHHHHhCCChH
Q 003146 562 ILVDITLSSTSENEKAAAVGILSNLPVSNK----------------K---------------------ATELLKKTNLLP 604 (844)
Q Consensus 562 ~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~----------------~---------------------~~~~l~~~~~v~ 604 (844)
.|+++|.+ ++.+.+..|+.+|.+|..... . .++.....|+++
T Consensus 534 pLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~ 612 (2102)
T PLN03200 534 ALLWLLKN-GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612 (2102)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH
Confidence 99999985 678888889999888853111 0 111122468999
Q ss_pred HHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCcc
Q 003146 605 SLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLS 684 (844)
Q Consensus 605 ~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~ 684 (844)
.|++++++++. ..++.|+++|.+++.. +++....+...|++|+|+.+|++++.++++.|+++|.+++.+...
T Consensus 613 ~Lv~LL~sgs~-------~ikk~Aa~iLsnL~a~-~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 613 TLIQLLSSSKE-------ETQEKAASVLADIFSS-RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred HHHHHHcCCCH-------HHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 99999998763 5788999999999985 455556789999999999999999999999999999999964432
Q ss_pred ccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHH
Q 003146 685 LRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLA 764 (844)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~ 764 (844)
++...++++|+|+||+++|.+.+.++++.|+.||.+++.+. .+...+.
T Consensus 685 -----------------------------~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~---e~~~ei~ 732 (2102)
T PLN03200 685 -----------------------------NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP---EVAAEAL 732 (2102)
T ss_pred -----------------------------HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc---hHHHHHH
Confidence 12256689999999999999999999999999999999887 3567788
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhh----cc-ccchhHHhhhhcCCCCchHH--HHHHHHHHhhh
Q 003146 765 KLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKY----GE-SAQVVLIDLAQNGDSRLKPA--VAKLLAQLELL 837 (844)
Q Consensus 765 ~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~----~~-~a~~~Lv~ll~~~~~~~~~~--aa~~L~~l~~~ 837 (844)
+.|+|++|+++|+++++..|+.|.|+|.++++.....+.+ .. .+..+|+++|...|.+.... |..+|+.|.+.
T Consensus 733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999876544422 11 22469999999988887776 99999999886
Q ss_pred hcCCCC
Q 003146 838 QAQSSY 843 (844)
Q Consensus 838 ~~~s~~ 843 (844)
...++|
T Consensus 813 ~~~~~~ 818 (2102)
T PLN03200 813 KGGANF 818 (2102)
T ss_pred cccCCC
Confidence 555554
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-34 Score=305.41 Aligned_cols=412 Identities=17% Similarity=0.234 Sum_probs=346.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCc--cHHHHHHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcCc-hhhhh
Q 003146 310 IVMLVSMLSGNDPVASHDAGKLLNALSSNTQ--NALHMAEAGYFKPLVQYLKEG-SDMSKILMATALSRMELTD-QSRAS 385 (844)
Q Consensus 310 i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~-~~~~~ 385 (844)
.+.++..+.|+++..+..+...++.|-+.+. ....+...|.++.+|+.|..+ ++..+..||++|.|++... +.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 6778888899999999999888888865443 355666779999999999755 5888999999999999865 66667
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS 464 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~ 464 (844)
+.+.|++|.++.++.+++..+++.|++||+|++.+. ..+..+++.|++++|+.++...... ....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~--~~lR------------ 213 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL--SMLR------------ 213 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch--HHHH------------
Confidence 788999999999999999999999999999999985 5677788999999999999866531 1223
Q ss_pred hhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 465 ESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 465 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
++.|+|.|||++..+...-.. -..++|.|..++.+.++++...|+|++++|+
T Consensus 214 --------------------------n~tW~LsNlcrgk~P~P~~~~--v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 214 --------------------------NATWTLSNLCRGKNPSPPFDV--VAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred --------------------------HHHHHHHHHHcCCCCCCcHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 455666666666421111111 1237899999999999999999999999999
Q ss_pred hhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhH
Q 003146 545 KDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWL 624 (844)
Q Consensus 545 ~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l 624 (844)
.+.++.+...+..+.++.|+.+|.. .+..++..|..+++|++.++...++.+...|++|.|..++..... +.+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~------~~i 338 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK------ESI 338 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc------hhH
Confidence 8888888777888899999999994 666788899999999999999999999999999999999975432 236
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcC
Q 003146 625 VESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFC 704 (844)
Q Consensus 625 ~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c 704 (844)
++.|+|++.|++. ++++..+.+.+.|++|.|+.+|++++.++|+.|+||++|++.++..
T Consensus 339 kkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-------------------- 397 (514)
T KOG0166|consen 339 KKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP-------------------- 397 (514)
T ss_pred HHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH--------------------
Confidence 7899999999999 4566566889999999999999999999999999999999876542
Q ss_pred cccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccc------hhhhHHHHhcCChHHHHHHhhc
Q 003146 705 EVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETW------ESGSNYLAKLSGTQAIIKVLES 778 (844)
Q Consensus 705 ~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~------~~~~~~i~~~g~i~~lv~ll~~ 778 (844)
++...|++.|+|+||+.+|.-.|..+...++.+|.++..-+.. ......|.++||+.++-.+..+
T Consensus 398 ---------~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~h 468 (514)
T KOG0166|consen 398 ---------EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSH 468 (514)
T ss_pred ---------HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcc
Confidence 5668899999999999999999999999999999999965431 3457789999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhh
Q 003146 779 GNAKAQEKALWILERIFRIEEH 800 (844)
Q Consensus 779 ~~~~~~~~A~~~L~~i~~~~~~ 800 (844)
.+.++.++|...+++.|..++.
T Consensus 469 en~~Iy~~A~~II~~yf~~e~~ 490 (514)
T KOG0166|consen 469 ENEEIYKKAYKIIDTYFSEEDD 490 (514)
T ss_pred ccHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999987533
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-33 Score=279.49 Aligned_cols=416 Identities=19% Similarity=0.223 Sum_probs=340.3
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhcc--CCccHHHHHHcCChHHHHHHhcc-CCHHHHHHHHHHHHHhhcCch-hhh
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSS--NTQNALHMAEAGYFKPLVQYLKE-GSDMSKILMATALSRMELTDQ-SRA 384 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~-~~~ 384 (844)
-+|.|..-|.|+|.+.+..|+.-.+.+-+ +......++++|++|.++++|.+ .....+..|+++|.|++.... ...
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 56888888999999999888777666543 33447778899999999999954 456678899999999998754 344
Q ss_pred hhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc-cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 385 SLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE-NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 385 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
.+.+.|++|.+++||.+++..+++.++|||+|++.+.+ .+..+.+.|++.+++.++.+.... ..+..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-ismlR----------- 219 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISMLR----------- 219 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHHH-----------
Confidence 56689999999999999999999999999999999865 667778999999999999865421 12223
Q ss_pred ChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 464 SESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTL 543 (844)
Q Consensus 464 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~l 543 (844)
++.|+|.|||+...++..-..+. .++|.|..++-+.++++...|+|++..|
T Consensus 220 ---------------------------n~TWtLSNlcRGknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 220 ---------------------------NATWTLSNLCRGKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred ---------------------------HhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 45555555555432211111221 1688999999999999999999999999
Q ss_pred hhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchh
Q 003146 544 SKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPW 623 (844)
Q Consensus 544 s~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~ 623 (844)
+....+.+...+..+....|+.+|. +.+..++..|.+.++|+..++...++.++..|+++.+..+|.++.. .
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs-~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-------~ 342 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLS-HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-------N 342 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhc-CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-------h
Confidence 8776677777777778888999998 4778889999999999999999889999999999999999977653 3
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCc
Q 003146 624 LVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAF 703 (844)
Q Consensus 624 l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~ 703 (844)
+++.++|.+.|++... .+..+.+.+.+++|+|+.+|.+.+..+|+.|+||+.|.+.++.+..
T Consensus 343 irKEaCWTiSNITAGn-teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P----------------- 404 (526)
T COG5064 343 IRKEACWTISNITAGN-TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP----------------- 404 (526)
T ss_pred hhhhhheeecccccCC-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc-----------------
Confidence 6779999999999964 4445588999999999999999999999999999999987665522
Q ss_pred CcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc---------chhhhHHHHhcCChHHHHH
Q 003146 704 CEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET---------WESGSNYLAKLSGTQAIIK 774 (844)
Q Consensus 704 c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~---------~~~~~~~i~~~g~i~~lv~ 774 (844)
+....|++.|+|.||..+|.-.+..+.+.+++|+.|+...+. +-.++.++.++||+..+-.
T Consensus 405 ----------D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~ 474 (526)
T COG5064 405 ----------DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHG 474 (526)
T ss_pred ----------hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHH
Confidence 445789999999999999999899999999999999987653 1235677888999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhh
Q 003146 775 VLESGNAKAQEKALWILERIFRIEEHR 801 (844)
Q Consensus 775 ll~~~~~~~~~~A~~~L~~i~~~~~~~ 801 (844)
+..+.|..+..+|-.+++++|..++..
T Consensus 475 ~Q~s~n~~iy~KAYsIIe~fFgeeD~v 501 (526)
T COG5064 475 LQDSVNRTIYDKAYSIIEKFFGEEDAV 501 (526)
T ss_pred hhhccccHHHHHHHHHHHHHcccchhh
Confidence 999999999999999999999765433
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-34 Score=283.69 Aligned_cols=440 Identities=19% Similarity=0.240 Sum_probs=370.9
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASL 386 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (844)
...+.+..-++.+.++.+|..|..++.||+.+-+|+..+++.+++++|+.-+..+..+++.++..++.+|+.-+++|..|
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 44567777889999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred hhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-
Q 003146 387 GEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE- 465 (844)
Q Consensus 387 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~- 465 (844)
...|++.+|.++-++.+.+++.++..+|.|+....+|++.++.+|++|.|+.++.+++. .+++.|...+.|++-+.
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~---dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL---DVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh---hHHHHHHHHhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999998874 47899999999999875
Q ss_pred --hhhcccc--hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 003146 466 --SILVNKD--VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVC 541 (844)
Q Consensus 466 --~~l~~~~--~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~ 541 (844)
.++.+.+ .++.|++++++++++++..|..+|.+++++ .+|+..+.+.|++|.++++++++.-........+++
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd---t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD---TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc---chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 4666655 899999999999999999999999999988 799999999999999999999988777778888999
Q ss_pred HhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCc
Q 003146 542 TLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHST 621 (844)
Q Consensus 542 ~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~ 621 (844)
|++-+..++. -....+.+.+||++|...++++.+..|...|+||+.+....+..+.+.|++|.++.++.++..
T Consensus 318 nisihplNe~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv------ 390 (550)
T KOG4224|consen 318 NISIHPLNEV-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV------ 390 (550)
T ss_pred hcccccCccc-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh------
Confidence 9987655432 123456889999999988888899999999999999888889999999999999999998764
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCC
Q 003146 622 PWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSAD 701 (844)
Q Consensus 622 ~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 701 (844)
++++..-.++..++...+. +..+.+.|++|.|+.++.+.+.+++-.||.||.||+.+..+..+. ...| .+
T Consensus 391 -svqseisac~a~Lal~d~~--k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Yarv--iEaw--d~--- 460 (550)
T KOG4224|consen 391 -SVQSEISACIAQLALNDND--KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARV--IEAW--DH--- 460 (550)
T ss_pred -hHHHHHHHHHHHHHhcccc--HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHH--HHHh--cC---
Confidence 3566777777777764333 567889999999999999999999999999999999887664311 0000 00
Q ss_pred CcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCH
Q 003146 702 AFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNA 781 (844)
Q Consensus 702 ~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~ 781 (844)
| ..|.-..|++.+.+.+.-++..+.+.+..|..++ ..|+..+.++++
T Consensus 461 ---P---------------~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h--------------~~~~~~~i~~~d- 507 (550)
T KOG4224|consen 461 ---P---------------VQGIQGRLARFLASHELTFRHIARWTIQQLLEDH--------------DLPLTAFIQSSD- 507 (550)
T ss_pred ---c---------------chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC--------------CccHHHHHhCch-
Confidence 0 1233467889999888889999999999888775 456666666655
Q ss_pred HHHHHHHHHHHHHHhhhhhhH
Q 003146 782 KAQEKALWILERIFRIEEHRV 802 (844)
Q Consensus 782 ~~~~~A~~~L~~i~~~~~~~~ 802 (844)
++.+.+...+++..+.+++.+
T Consensus 508 dii~~~~~~~~r~~~~g~~~~ 528 (550)
T KOG4224|consen 508 DIIELLNDIVARDANNGEYED 528 (550)
T ss_pred hHHHHHHHHHHHhccCCcccC
Confidence 344666666666665555543
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-32 Score=269.36 Aligned_cols=396 Identities=23% Similarity=0.283 Sum_probs=335.3
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHh
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIG 304 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~ 304 (844)
......-++.+.+..++..+-.++++++. +.+++-.+++.++++.|+..... +.+.|..+++.+++|+..++++..|.
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhh
Confidence 34455667788889999999999999974 55788889999999988777665 56789999999999999999999999
Q ss_pred hhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhh
Q 003146 305 RIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRA 384 (844)
Q Consensus 305 ~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (844)
. .|++.+|.++-+++|..+|+++.++|.||....+||+.++.+|++|.||+++++++..++..+..++++++.+...|+
T Consensus 165 ~-sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 165 R-SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred h-ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 8 999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC--chHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHh
Q 003146 385 SLGEDG--AIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIA 462 (844)
Q Consensus 385 ~i~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~ 462 (844)
.+.+.+ .+|.||++.+++++++|-.|..||+||+++.+....++++|.+|.++++|+++.. .+.-....++.|++
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~---plilasVaCIrnis 320 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG---PLILASVACIRNIS 320 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch---hHHHHHHHHHhhcc
Confidence 998866 9999999999999999999999999999999999999999999999999987653 24567778889999
Q ss_pred cCh---hhhcccchHHHHHHhhccCCh-HHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 463 QSE---SILVNKDVAQQMLSLLNLCSP-TIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 463 ~~~---~~l~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
-++ ..+.+.|.+.+|+.+|+.++. ++|.+|+.+|++|+... ...+..+.+.|+++.+..++.++...+|..-..
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass--e~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS--EHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh--hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 886 356778999999999998765 59999999999999864 788899999999999999999888777765555
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCC
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKT 618 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~ 618 (844)
++..|+. +...+..+.+.|++|.|+....+.+.
T Consensus 399 c~a~Lal--------------------------------------------~d~~k~~lld~gi~~iLIp~t~s~s~--- 431 (550)
T KOG4224|consen 399 CIAQLAL--------------------------------------------NDNDKEALLDSGIIPILIPWTGSESE--- 431 (550)
T ss_pred HHHHHHh--------------------------------------------ccccHHHHhhcCCcceeecccCccch---
Confidence 5444331 12235566778888888887766553
Q ss_pred CCchhHHHHHHHHHHhccCCCCHHHHHHHHH------cCCHHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 003146 619 HSTPWLVESVAGILIRFTDPSDKKLQQYSVQ------HGVIRLLVKLLSSESVVAKSSASISLAQLSQN 681 (844)
Q Consensus 619 ~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~ 681 (844)
+++.+++.+|.||+...+.. ..+++ .|+-..|++++.+....++..|.|.+.+|..+
T Consensus 432 ----Ev~gNaAaAL~Nlss~v~~Y--arviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 432 ----EVRGNAAAALINLSSDVEHY--ARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred ----hhcccHHHHHHhhhhhhHHH--HHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 45668888888888743322 22332 35667899999999999999999999998854
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.9e-29 Score=271.97 Aligned_cols=398 Identities=20% Similarity=0.247 Sum_probs=334.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc--cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----
Q 003146 392 IEPLVRMFRVGKLEAKLSALNALQNLSLLAE--NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---- 465 (844)
Q Consensus 392 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---- 465 (844)
.+.++..+.+.++..+..+..+++.|.+... ....++..|+||.++..|..+.+ ..++.+|+|+|.|++.+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~--~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN--PTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC--hhHHHHHHHHHHHHhcCchhhc
Confidence 5778888888888888889999988876543 45666777999999999986553 458899999999999985
Q ss_pred hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-HHHHHHHHHHHHhh
Q 003146 466 SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-NIRAAALNLVCTLS 544 (844)
Q Consensus 466 ~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~v~~~A~~~L~~ls 544 (844)
..+.+.|+++.++.++.+++..+++.|+|+|.|++.++ +.+|..+.+.|++++|+.++...+. ...+.+.|+|.||+
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds--~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS--PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC--hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999887 8999999999999999999998887 78899999999999
Q ss_pred hhhh-HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchh
Q 003146 545 KDVY-EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPW 623 (844)
Q Consensus 545 ~~~~-~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~ 623 (844)
++.. ..-.+.+. ..++.|..++. +.|+++...|++++++|+.+..+..+.+.+.|++|.|+.+|...+..
T Consensus 224 rgk~P~P~~~~v~-~iLp~L~~ll~-~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~------- 294 (514)
T KOG0166|consen 224 RGKNPSPPFDVVA-PILPALLRLLH-STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK------- 294 (514)
T ss_pred cCCCCCCcHHHHH-HHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc-------
Confidence 8763 22112222 26777888777 68899999999999999998889999999999999999999887643
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCC
Q 003146 624 LVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLS-SESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADA 702 (844)
Q Consensus 624 l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~ 702 (844)
++-.|+.+++|++...+.+.+ .+...|++|.|..++. +....+|+.|+|.++|++.+...
T Consensus 295 v~~PaLRaiGNIvtG~d~QTq-~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~------------------ 355 (514)
T KOG0166|consen 295 VVTPALRAIGNIVTGSDEQTQ-VVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE------------------ 355 (514)
T ss_pred cccHHHhhccceeeccHHHHH-HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH------------------
Confidence 334899999999987666544 7889999999999998 55667999999999999986654
Q ss_pred cCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHH
Q 003146 703 FCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAK 782 (844)
Q Consensus 703 ~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~ 782 (844)
+..+++++|.+|.|+.+|+..+..+|..|++|++|+...+.+ +.+..+.+.|.|+|+..+|.-.+..
T Consensus 356 ------------qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ 422 (514)
T KOG0166|consen 356 ------------QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVK 422 (514)
T ss_pred ------------HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChH
Confidence 337899999999999999999999999999999999998874 4688999999999999999888999
Q ss_pred HHHHHHHHHHHHHhhhhhhHh-----hc----cccchhHHhhhh-cCCCCchHHHHHHHHHH
Q 003146 783 AQEKALWILERIFRIEEHRVK-----YG----ESAQVVLIDLAQ-NGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 783 ~~~~A~~~L~~i~~~~~~~~~-----~~----~~a~~~Lv~ll~-~~~~~~~~~aa~~L~~l 834 (844)
+...++.+|++|++..|.... |. +..+..-++-|| +++.++...|.+++.+-
T Consensus 423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 999999999999998765432 11 112345566566 66678888888887653
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=3.1e-28 Score=241.82 Aligned_cols=400 Identities=18% Similarity=0.241 Sum_probs=328.3
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhcC--cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSLL--AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--- 465 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--- 465 (844)
-+|.|..-|-+.+.+.+..|..-.+.+.+. ..-.+.++++|+||.++++|.+...+ -++-+|+|+|.|++++.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~--mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD--MLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh--HHHHHHHHHHhhhccCcccc
Confidence 458888888777777777777666666543 34567889999999999999766543 36789999999999885
Q ss_pred -hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH--HHHHHHHHHHHH
Q 003146 466 -SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA--NIRAAALNLVCT 542 (844)
Q Consensus 466 -~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~v~~~A~~~L~~ 542 (844)
.++.+.|++|.++++|.+++.++++.++|+|.|++-.+ +.+|..+.+.|++++++.++.+... .+.+.+.|.|.|
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS--EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc--hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 57888999999999999999999999999999999775 8999999999999999999998766 678899999999
Q ss_pred hhhhhh-HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCc
Q 003146 543 LSKDVY-EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHST 621 (844)
Q Consensus 543 ls~~~~-~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~ 621 (844)
|++... ..-...+ ...++.|.+++- +.|+++...|++++++|+.+.-+..+++.+.|.-+.|+.+|.+++..
T Consensus 228 lcRGknP~P~w~~i-sqalpiL~KLiy-s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~----- 300 (526)
T COG5064 228 LCRGKNPPPDWSNI-SQALPILAKLIY-SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK----- 300 (526)
T ss_pred hhCCCCCCCchHHH-HHHHHHHHHHHh-hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc-----
Confidence 997643 1111111 125666666665 68899999999999999998888899999999999999999887643
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCC
Q 003146 622 PWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSAD 701 (844)
Q Consensus 622 ~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 701 (844)
++-.++...+|+....|.+.+ .+...|+++.+..+|++....+|+.|+|.+.|+..+...
T Consensus 301 --iqtPalR~vGNIVTG~D~QTq-viI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnte----------------- 360 (526)
T COG5064 301 --IQTPALRSVGNIVTGSDDQTQ-VIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTE----------------- 360 (526)
T ss_pred --ccCHHHHhhcCeeecCcccee-hheecccHHHHHHHhcChhhhhhhhhheeecccccCCHH-----------------
Confidence 345899999999988777654 678899999999999999999999999999999876554
Q ss_pred CcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc-chhhhHHHHhcCChHHHHHHhhcCC
Q 003146 702 AFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET-WESGSNYLAKLSGTQAIIKVLESGN 780 (844)
Q Consensus 702 ~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~-~~~~~~~i~~~g~i~~lv~ll~~~~ 780 (844)
+..++++++.+|||+.+|...+..++..|.+|+.|....+. ...-++.+.+-|.|.||..+|.-.+
T Consensus 361 -------------qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 361 -------------QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred -------------HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 34889999999999999999999999999999999998765 2346889999999999999997777
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hHhhcc----------cc-chhHH-hhhhcCCCCchHHHHHHHHHH
Q 003146 781 AKAQEKALWILERIFRIEEH-RVKYGE----------SA-QVVLI-DLAQNGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 781 ~~~~~~A~~~L~~i~~~~~~-~~~~~~----------~a-~~~Lv-~ll~~~~~~~~~~aa~~L~~l 834 (844)
-.+-+.++.++++|++.++. +..|+. .| ++-.+ ++-++++..+-.+|..+....
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 67888899999999998764 223332 23 35555 444577788888888877543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=3.4e-25 Score=252.89 Aligned_cols=511 Identities=20% Similarity=0.218 Sum_probs=373.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCC---CchHHHHHHHHHHHhHhcChhhHH
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSS---KPYNRLIMIQILRNLASENADYKE 261 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~---~~~~~~~a~~~L~~L~~~~~~~~~ 261 (844)
++.-++.+- ++-.+..++...+..|+++|..=...+..+-.+-.|...|+.+ +.+......++...+ +...+...
T Consensus 125 ~d~yiE~lY-e~~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~f-S~f~~fH~ 202 (708)
T PF05804_consen 125 LDEYIELLY-EDIPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCF-SNFSQFHP 202 (708)
T ss_pred HHHHHHHHh-cccHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HhHHHHHH
Confidence 444555553 3334455677889999988875444455444566666666421 223333333333333 22222233
Q ss_pred HHhcCCcHHHHHHHhcCCHHHHHHHHH--HHHH---ccCC-ChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q 003146 262 KMANVGSLSALVKSLTRDVEEQREAVG--LLLD---LSDL-PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNAL 335 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~~~~~~~~~A~~--~L~~---Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nL 335 (844)
.+.....=..-++.+ +.+.++.-.| .+.. .+.. +..+..+-. ....+-.+++.. ......+...|.||
T Consensus 203 ~l~~~kiG~l~m~ii--e~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~---~~kk~~~l~~kQ-eqLlrv~~~lLlNL 276 (708)
T PF05804_consen 203 ILAHYKIGSLCMEII--EHELKRHDLWQEELRKKKKAAEEKPEAKKDYEK---ELKKLQTLIRKQ-EQLLRVAFYLLLNL 276 (708)
T ss_pred HHHhccHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhccchhhhhhHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 332222111122222 2233332222 1111 1111 112111111 123334444433 34445778899999
Q ss_pred ccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHH
Q 003146 336 SSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQ 415 (844)
Q Consensus 336 s~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 415 (844)
+.+..+...|.+.|.++.|+++|.+++.+....++..|.+|+...++|..+.+.|+|++|++++.+++......++++|+
T Consensus 277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 277 AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF 356 (708)
T ss_pred hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhcc-CChHHHHH
Q 003146 416 NLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLNL-CSPTIQYH 491 (844)
Q Consensus 416 nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~~-~~~~~~~~ 491 (844)
|||.+++++..|++.|++|+|+.+|.+++ .+..+..+|.+++..+ ..+...++++.+++++-. +++.+...
T Consensus 357 NLSfd~~~R~~mV~~GlIPkLv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e 431 (708)
T PF05804_consen 357 NLSFDPELRSQMVSLGLIPKLVELLKDPN-----FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLE 431 (708)
T ss_pred HhCcCHHHHHHHHHCCCcHHHHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHH
Confidence 99999999999999999999999998654 4578999999999986 455666899999997654 56667778
Q ss_pred HHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCC
Q 003146 492 LLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSST 571 (844)
Q Consensus 492 a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~ 571 (844)
++..+.|++.+ +.+.+.+.+.|+++.|+.......+.+ ..++++|++.|.+.. .. .-.+.+..|++++...+
T Consensus 432 liaL~iNLa~~---~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~-k~-~f~~~i~~L~~~v~~~~ 503 (708)
T PF05804_consen 432 LIALLINLALN---KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPL-KE-LFVDFIGDLAKIVSSGD 503 (708)
T ss_pred HHHHHHHHhcC---HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchH-HH-HHHHHHHHHHHHhhcCC
Confidence 89999999988 688889999999999998866554432 457999999887532 22 22347888999998777
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcC
Q 003146 572 SENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHG 651 (844)
Q Consensus 572 ~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g 651 (844)
+++....+.|+|+||+..+....+.+.+.+.+|.|.++|.++... +.+.-.++..++.++. ++++...+.+.|
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~-----dDl~LE~Vi~~gtla~--d~~~A~lL~~sg 576 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE-----DDLLLEVVILLGTLAS--DPECAPLLAKSG 576 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC-----hHHHHHHHHHHHHHHC--CHHHHHHHHhCC
Confidence 788889999999999988888888888899999999999876532 3567778888888775 788888999999
Q ss_pred CHHHHHHHhccC--CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHH
Q 003146 652 VIRLLVKLLSSE--SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLI 729 (844)
Q Consensus 652 ~i~~Lv~lL~~~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv 729 (844)
+++.|+.+|++. +.+.......++.++-....... .-+.+.+++.-|+
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~------------------------------~ll~~~~~~~yli 626 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETRE------------------------------VLLKETEIPAYLI 626 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHH------------------------------HHHhccchHHHHH
Confidence 999999999764 56777788888888876544311 2233578999999
Q ss_pred HhhcCCChhhHHHHHHHHHhhhcc
Q 003146 730 QVLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 730 ~lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
.++++.|+++|..|-.+|--++.-
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888753
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=5.1e-22 Score=226.97 Aligned_cols=477 Identities=19% Similarity=0.213 Sum_probs=371.1
Q ss_pred CCcHHHHHHHhcCCHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC---CChHHHHHHHHHHHHhccCCccH
Q 003146 266 VGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG---NDPVASHDAGKLLNALSSNTQNA 342 (844)
Q Consensus 266 ~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s---~d~~~~~~A~~~L~nLs~~~~~~ 342 (844)
.+.++..+.+|..+.+++..++..|..|++++++-..+..+.-.+..|.+.|+. .+.+...+.+.+...+|...+..
T Consensus 122 ~~~~d~yiE~lYe~~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH 201 (708)
T PF05804_consen 122 INDLDEYIELLYEDIPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFH 201 (708)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 345777888888777778889999999999999999999877889999999964 45666677777888887665544
Q ss_pred HHHHHcCChHHHHHHhc-----------------------------------------cCCHHHHHHHHHHHHHhhcCch
Q 003146 343 LHMAEAGYFKPLVQYLK-----------------------------------------EGSDMSKILMATALSRMELTDQ 381 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~-----------------------------------------~~~~~~~~~aa~~L~~Ls~~~~ 381 (844)
..+.+...-...++++. ......-..+...|.||+.+..
T Consensus 202 ~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed~~ 281 (708)
T PF05804_consen 202 PILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAEDPR 281 (708)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 44332211111111110 0011122346667999999999
Q ss_pred hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 382 SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 382 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
+...+.+.|.++.|+++|++++.+....++..|.+||...+|+..|.+.|+|++|..++.+.+ ..+...++.+|.||
T Consensus 282 ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~---~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 282 VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN---EDLVNVALRLLFNL 358 (708)
T ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC---HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998776 35789999999999
Q ss_pred hcCh---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHH
Q 003146 462 AQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNANIRAAAL 537 (844)
Q Consensus 462 ~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~ 537 (844)
+.++ ..+.+.|++|.|+.++.. +..+..++.+|+++|.. ++.+..+...++++.+++++.+ +++++...+.
T Consensus 359 Sfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~d---d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eli 433 (708)
T PF05804_consen 359 SFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMD---DEARSMFAYTDCIPQLMQMLLENSEEEVQLELI 433 (708)
T ss_pred CcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccC---HhhHHHHhhcchHHHHHHHHHhCCCccccHHHH
Confidence 9997 467888999999999964 56778899999999987 6889999999999999997665 4567888888
Q ss_pred HHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCC
Q 003146 538 NLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITK 617 (844)
Q Consensus 538 ~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~ 617 (844)
.++.|++.+.. ........++++.|++..-...++ .....+.|++.+++..+..+. +.+..|+.++..++.
T Consensus 434 aL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~-- 504 (708)
T PF05804_consen 434 ALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDS-- 504 (708)
T ss_pred HHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCc--
Confidence 99999987654 222333445888888765544442 244679999987755555443 578888888866542
Q ss_pred CCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhhcCcccccccccccee
Q 003146 618 THSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE--SVVAKSSASISLAQLSQNSLSLRKSKISKWLC 695 (844)
Q Consensus 618 ~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~ 695 (844)
.++.-.++++|.|++.+ +.+|...+.+.+.+|.|.++|..+ .+++.-.++..++.++.+...
T Consensus 505 ----ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~----------- 568 (708)
T PF05804_consen 505 ----EEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPEC----------- 568 (708)
T ss_pred ----HHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHH-----------
Confidence 35777999999999985 567777788899999999999765 467888899999988864332
Q ss_pred cCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc--CCChhhHHHHHHHHHhhhccccchhhhHH-HHhcCChHHH
Q 003146 696 VPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE--GKEREADETVLGALASLLQDETWESGSNY-LAKLSGTQAI 772 (844)
Q Consensus 696 ~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~--~~~~~v~~~A~~AL~~L~~~~~~~~~~~~-i~~~g~i~~l 772 (844)
...+.+.|.++.|+.+|. .+|++.....+.++..+...+. .... +.+.+++..+
T Consensus 569 --------------------A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~---tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 569 --------------------APLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE---TREVLLKETEIPAYL 625 (708)
T ss_pred --------------------HHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH---HHHHHHhccchHHHH
Confidence 244568899999999996 4678899999999999997653 3334 4667788889
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 773 IKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 773 v~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
+.++++.|+.+|+.|-.+|.-|....
T Consensus 626 idL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 626 IDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998776543
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.86 E-value=3.1e-20 Score=206.81 Aligned_cols=425 Identities=18% Similarity=0.192 Sum_probs=311.6
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc---hhhh
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD---QSRA 384 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~---~~~~ 384 (844)
-+|..+.+|.+.++.+|.+|+.-+..+|+ +.+.|..+.+.|+|+.||.+|.+...+++.+++++|.||.... +++.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 47888899999999999999999999997 5556888889999999999999999999999999999999853 5899
Q ss_pred hhhhcCchHHHHHHhhc-CCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 385 SLGEDGAIEPLVRMFRV-GKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 385 ~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
.|.+.++|+.++++|+. .|.++++....+||||++++..+..++.. +++.|..-.-.+.+.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sg----------------- 375 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSG----------------- 375 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccc-----------------
Confidence 99999999999999996 78899999999999999996666655543 334443333222110
Q ss_pred ChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhC-CcHHHHHHHhcc------CCHHHHHHH
Q 003146 464 SESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKEN-GAIHLLLPFLME------TNANIRAAA 536 (844)
Q Consensus 464 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~------~~~~v~~~A 536 (844)
+..+-.+ .+..+..+-.++.++|.|+++.+ .+.|+.+++. |.|+.|+..+++ .+....+++
T Consensus 376 -----w~~~~~~-----~~~~~~~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENc 443 (717)
T KOG1048|consen 376 -----WEEEPAP-----RKAEDSTVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENC 443 (717)
T ss_pred -----cCCCCcc-----cccccceeeehhhhhhccccchh--HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHH
Confidence 0100000 12234566778999999998875 7888888865 789999988873 345678899
Q ss_pred HHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCC---------------CCHHHHHHHHhCC
Q 003146 537 LNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPV---------------SNKKATELLKKTN 601 (844)
Q Consensus 537 ~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~---------------~~~~~~~~l~~~~ 601 (844)
..+|+||+.....++..... ..+ .-........-.....+++..-.. ..+.--.+++...
T Consensus 444 vCilRNLSYrl~~Evp~~~~----~~~-~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~ 518 (717)
T KOG1048|consen 444 VCILRNLSYRLEAEVPPKYR----QVL-ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPS 518 (717)
T ss_pred HHHHhhcCchhhhhcCHhhh----hHh-hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHH
Confidence 99999998765444322110 000 000000000000011111211111 0122245677777
Q ss_pred ChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCH---HHHH-HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 602 LLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDK---KLQQ-YSVQHGVIRLLVKLLSSESVVAKSSASISLAQ 677 (844)
Q Consensus 602 ~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~---~~~~-~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ 677 (844)
+|.....++..... ....|+++++|.|++....+ ..+. .+.++.+.|.|+++|+.+++.+.+.++.+|.|
T Consensus 519 vVr~Yl~Ll~~s~n------~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 519 VVRPYLLLLALSKN------DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN 592 (717)
T ss_pred HHHHHHHHHHHhcc------hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence 88887777763321 24789999999999987432 2233 34788999999999999999999999999999
Q ss_pred HhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCC------ChhhHHHHHHHHHhhh
Q 003146 678 LSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGK------EREADETVLGALASLL 751 (844)
Q Consensus 678 ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~------~~~v~~~A~~AL~~L~ 751 (844)
|+.+..+ ..++.-++++.||..|.+. ++++..++...|.+++
T Consensus 593 ls~d~rn--------------------------------k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 593 LSRDIRN--------------------------------KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred hccCchh--------------------------------hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 9987665 5567788999999999743 3688999999999999
Q ss_pred ccccchhhhHHHHhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHHhhhhhhHhhcccc
Q 003146 752 QDETWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEKALWILERIFRIEEHRVKYGESA 808 (844)
Q Consensus 752 ~~~~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a 808 (844)
.++. .+++.+.+.+|+++|+-+. ...++.+-+.|.-.|..++.+.|.+-.|...+
T Consensus 641 ~~~~--~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g 696 (717)
T KOG1048|consen 641 RKNV--LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKG 696 (717)
T ss_pred HHhH--HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Confidence 7652 4788899999999999998 45677888999999999999998887776554
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=7e-19 Score=196.06 Aligned_cols=341 Identities=20% Similarity=0.195 Sum_probs=276.6
Q ss_pred cHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc---CCccH
Q 003146 268 SLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS---NTQNA 342 (844)
Q Consensus 268 ~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~---~~~~~ 342 (844)
.++..+.+|.+ +...+-.|+..|..+|.. ...+..+-+ .|+||.||.+|.+.+.+++.+|+++|.||.+ +++|+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 56778899987 566888999999999986 567777776 9999999999999999999999999999986 34589
Q ss_pred HHHHHcCChHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcC--------------CHHHH
Q 003146 343 LHMAEAGYFKPLVQYLKE-GSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVG--------------KLEAK 407 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~~~ 407 (844)
..|.+.++++.++++|+. ++.+++.+.+.+|+||+.+|..|..|.. .+++.|..-+-.+ +..+-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999997 6889999999999999999988888776 4566665544321 13456
Q ss_pred HHHHHHHHHhhc-CcccHHHHHH-cCChHHHHHHhhcc---CCcchhhHHHHHHHHHHHhcCh-----------------
Q 003146 408 LSALNALQNLSL-LAENIQRLVI-SGIVSPLLQLLFSV---TSVLMTLREPASAILARIAQSE----------------- 465 (844)
Q Consensus 408 ~~A~~aL~nLs~-~~~~~~~i~~-~g~v~~Lv~lL~~~---~~~~~~l~~~a~~~L~~l~~~~----------------- 465 (844)
..+..+|+|+++ ..+.+++|-+ .|.|..|+..++.. ...+....++|..+|.||+..-
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 789999999998 5678888876 78999999888732 1112335689999999996421
Q ss_pred ----------------------------------------hhhcccchHHHHHHhhcc-CChHHHHHHHHHHHHhhcCCC
Q 003146 466 ----------------------------------------SILVNKDVAQQMLSLLNL-CSPTIQYHLLHALNSIAAHSS 504 (844)
Q Consensus 466 ----------------------------------------~~l~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~ 504 (844)
..+++..+|.....+|.. .++.+.++++++|-||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 013334456665666654 567899999999999987754
Q ss_pred --hhHHHHHH-HhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCC-----HHHH
Q 003146 505 --ASNVRRKM-KENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTS-----ENEK 576 (844)
Q Consensus 505 --~~~~~~~i-~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~-----~~~~ 576 (844)
....+..+ ..+.+.+.|+++++.+++.+.+.++.+|+||+.+.. ..+.++..+++.|++.|..+.. ++..
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHHHH
Confidence 34555555 899999999999999999999999999999998654 3455667799999999987654 6777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhc
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATS 612 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~ 612 (844)
..++.+|.|+...+....+.+.+.++++.|+.+.++
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 889999999998899999999999999999999977
No 13
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.3e-15 Score=158.72 Aligned_cols=382 Identities=18% Similarity=0.201 Sum_probs=292.1
Q ss_pred hHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhc
Q 003146 322 PVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRV 401 (844)
Q Consensus 322 ~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 401 (844)
......|+..|.||+.+-..-..|.....+..||+.|...+.+.-......|-.|+..+++|..+++.|.++.|+++...
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 34456788999999988887788888899999999999988888778888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHH
Q 003146 402 GKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQML 478 (844)
Q Consensus 402 ~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv 478 (844)
.+++.+...+..|+||+-+..++.+|+..|.+|.|..+|.+.+. ...|..+|..++.++ ..+...++|+.+.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~-----~~iA~~~lYh~S~dD~~K~MfayTdci~~lm 431 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK-----HGIALNMLYHLSCDDDAKAMFAYTDCIKLLM 431 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc-----chhhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987763 256888888888876 3455668899888
Q ss_pred Hhh-ccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHH-hccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 479 SLL-NLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPF-LMETNANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 479 ~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
..+ ...+.++-...+..-.|||-+ ..+.+.+.+..++..|... +...++- -.+.+++++.|.+..-...
T Consensus 432 k~v~~~~~~~vdl~lia~ciNl~ln---kRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~F-- 502 (791)
T KOG1222|consen 432 KDVLSGTGSEVDLALIALCINLCLN---KRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMF-- 502 (791)
T ss_pred HHHHhcCCceecHHHHHHHHHHHhc---cccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHH--
Confidence 754 445556655555566788877 5667778888888888765 3444432 2456788888765331111
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhcc
Q 003146 557 DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 557 ~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~ 636 (844)
-+.+..|..+++..+++.-...+.|+++||...+....+.+.+...||.+...|..+... +.++-..+.+++..+
T Consensus 503 idyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e-----ddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 503 IDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE-----DDLVLQIVIACGTMA 577 (791)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc-----hhhhhHHHHHhhhhh
Confidence 236677888888766767678899999999998999999999999999999999876532 246667777777766
Q ss_pred CCCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcc
Q 003146 637 DPSDKKLQQYSVQHGVIRLLVKLLSSE--SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVK 714 (844)
Q Consensus 637 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~ 714 (844)
. +..+...+...|+|+.|+++|+.- +.+..........++-.....-+
T Consensus 578 ~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~---------------------------- 627 (791)
T KOG1222|consen 578 R--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRR---------------------------- 627 (791)
T ss_pred h--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 5 566677888999999999999753 33322233333333332211100
Q ss_pred cchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccc
Q 003146 715 STFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE 754 (844)
Q Consensus 715 ~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~ 754 (844)
..+.+..+-.-|+.++++.+.++|..+-.+|--++...
T Consensus 628 --~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 628 --LMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred --HHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 11223345578999999999999999999999888543
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=8.8e-15 Score=168.94 Aligned_cols=342 Identities=20% Similarity=0.185 Sum_probs=269.4
Q ss_pred HHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhC---CCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHH-------
Q 003146 203 ALLELRELISAKTVDSEWINEAEIIAVLLNRLG---SSKPYNRLIMIQILRNLASENADYKEKMANVGSLSAL------- 272 (844)
Q Consensus 203 a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~---s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L------- 272 (844)
-...++.+...++.+ ..+...|++|.++++|- .++.+.+..+..+|.||+...++.+..=.+...+..|
T Consensus 214 ~ar~fLemSss~esC-aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC 292 (2195)
T KOG2122|consen 214 MARTFLEMSSSPESC-AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC 292 (2195)
T ss_pred HHHHHHHhccCchhh-HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 345566777666654 45677889999999995 2356788999999999998877654221111111111
Q ss_pred ----HHHhcC-----C-H-HHH-HHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC---------C---ChHHHHHH
Q 003146 273 ----VKSLTR-----D-V-EEQ-REAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG---------N---DPVASHDA 328 (844)
Q Consensus 273 ----v~~L~~-----~-~-~~~-~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s---------~---d~~~~~~A 328 (844)
..+..+ + + +-+ ..|+..|..++.+++.|+.+.. .|++..+-+|+.- + ...++..|
T Consensus 293 ~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa 371 (2195)
T KOG2122|consen 293 ETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYA 371 (2195)
T ss_pred HHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 111222 1 1 122 3688999999999999999887 9998888887741 1 23568899
Q ss_pred HHHHHHhccCC-ccHHHHH-HcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhhhhhhhcCchHHHHHHh-hcCC
Q 003146 329 GKLLNALSSNT-QNALHMA-EAGYFKPLVQYLKEGSDMSKILMATALSRMELTD--QSRASLGEDGAIEPLVRMF-RVGK 403 (844)
Q Consensus 329 ~~~L~nLs~~~-~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL-~~~~ 403 (844)
..+|-||.+.+ .||..+. ..|++..+|..|.+..++.....|.+|.||+... +-|..+.+.|.+..|+... +...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 99999999854 4788887 5899999999999999999999999999999963 4577777889999888754 4445
Q ss_pred HHHHHHHHHHHHHhhcC-cccHHHHHH-cCChHHHHHHhhccCC-cchhhHHHHHHHHHHHhcCh-------hhhcccch
Q 003146 404 LEAKLSALNALQNLSLL-AENIQRLVI-SGIVSPLLQLLFSVTS-VLMTLREPASAILARIAQSE-------SILVNKDV 473 (844)
Q Consensus 404 ~~~~~~A~~aL~nLs~~-~~~~~~i~~-~g~v~~Lv~lL~~~~~-~~~~l~~~a~~~L~~l~~~~-------~~l~~~~~ 473 (844)
....+..+.|||||+.+ .+|+..|.. -|++..|+.+|..... ....+.+.+-+||.|.+..- .++...++
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 56778899999999987 789999986 6899999999976532 23456788999999987652 47888999
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
+..|++.|++.+-.+.-+++++||||.... .+-++.+.+.|+++.|..++++.+..+-+-++.+|+||..+.+
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~--p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSARS--PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcCC--HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999998876 7889999999999999999999999999999999999976654
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=3.9e-16 Score=179.89 Aligned_cols=344 Identities=19% Similarity=0.270 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCC---ChHHHHHHHHHHHHhccC-Cc-c--HHHHHHcCChH
Q 003146 280 VEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGN---DPVASHDAGKLLNALSSN-TQ-N--ALHMAEAGYFK 352 (844)
Q Consensus 280 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~---d~~~~~~A~~~L~nLs~~-~~-~--~~~i~~~g~i~ 352 (844)
.+.+..-...++.++..++.|..+.. .|++|.|+++|..+ +.+++..|-.+|.|+... ++ + |+.+.-...+.
T Consensus 208 t~D~ee~ar~fLemSss~esCaamR~-SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLe 286 (2195)
T KOG2122|consen 208 TDDEEEMARTFLEMSSSPESCAAMRR-SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLE 286 (2195)
T ss_pred cCCHHHHHHHHHHhccCchhhHHHHh-ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHH
Confidence 33445566778889999999999988 99999999999753 567788999999999753 22 2 33332222333
Q ss_pred HH-------HHHhccC-------CHHHHH-HHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhc-----C----C---HH
Q 003146 353 PL-------VQYLKEG-------SDMSKI-LMATALSRMELTDQSRASLGEDGAIEPLVRMFRV-----G----K---LE 405 (844)
Q Consensus 353 ~L-------v~~L~~~-------~~~~~~-~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~----~---~~ 405 (844)
.+ ..+|..+ ..+-+. .|..+|..+++++++|..+.+-|++..+-.|+.- + + -.
T Consensus 287 QIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~a 366 (2195)
T KOG2122|consen 287 QIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNA 366 (2195)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 22 2333332 223455 6677899999999999999999999999887752 1 1 24
Q ss_pred HHHHHHHHHHHhhcCcc-cHHHHH-HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-----hhhcccchHHHHH
Q 003146 406 AKLSALNALQNLSLLAE-NIQRLV-ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-----SILVNKDVAQQML 478 (844)
Q Consensus 406 ~~~~A~~aL~nLs~~~~-~~~~i~-~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-----~~l~~~~~i~~Lv 478 (844)
.|++|..||.||...+. |+..+. ..|++..+|..|.+.. ..+....+.+|.||+... .++...|.+..|+
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p---eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa 443 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP---EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALA 443 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh---HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHH
Confidence 68999999999997654 777777 5799999999998765 457788999999999874 4666677788777
Q ss_pred Hh-hccCChHHHHHHHHHHHHhhcCCChhHHHHHHH-hCCcHHHHHHHhccC----CHHHHHHHHHHHHHhhhhhh--HH
Q 003146 479 SL-LNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK-ENGAIHLLLPFLMET----NANIRAAALNLVCTLSKDVY--EE 550 (844)
Q Consensus 479 ~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~-~~g~i~~Lv~ll~~~----~~~v~~~A~~~L~~ls~~~~--~~ 550 (844)
.. |+...+......+.+||||+.|. .+++..|. -.|++..|+.+|... +-.+.+.|-.+|+|.+.+.. +.
T Consensus 444 ~~al~~~kEsTLKavLSALWNLSAHc--teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 444 ACALRNKKESTLKAVLSALWNLSAHC--TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHhcccchHHHHHHHHhhhhhcc--cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 74 55666678889999999999986 66666666 458899999999865 33688999999999987655 33
Q ss_pred HHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHH
Q 003146 551 LAEQLG-DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVA 629 (844)
Q Consensus 551 i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~ 629 (844)
....+. ...|..|++.|+ +.+-.+...+||+|+||...+++.++.||+.|+++.|.+++++.+.. +.+.++
T Consensus 522 yRQILR~~NCLq~LLQ~LK-S~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM-------Ia~GSa 593 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM-------IAMGSA 593 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhh-hcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh-------hhhhHH
Confidence 333333 338889999998 46677788999999999999999999999999999999999987743 456888
Q ss_pred HHHHhccC
Q 003146 630 GILIRFTD 637 (844)
Q Consensus 630 ~aL~~l~~ 637 (844)
.+|.|+..
T Consensus 594 aALrNLln 601 (2195)
T KOG2122|consen 594 AALRNLLN 601 (2195)
T ss_pred HHHHHHhc
Confidence 88888765
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.7e-13 Score=133.80 Aligned_cols=320 Identities=16% Similarity=0.185 Sum_probs=233.4
Q ss_pred hCCCHHHHHHHh---CCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCCH---HHHHHHHHHHHHcc-C
Q 003146 223 EAEIIAVLLNRL---GSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDV---EEQREAVGLLLDLS-D 295 (844)
Q Consensus 223 ~~~~~p~l~~lL---~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~~---~~~~~A~~~L~~Ls-~ 295 (844)
..|..|.++-.+ .+++.....+++.+|..++...+ .+.+..+...++++|..+. +.-......+..-+ .
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 344555555544 35677788889999998875543 3667788999999997632 33333334444333 4
Q ss_pred CChhHHHHhhhhCcHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCcc----------HHHHHHcCChHHHHHHhccC-CH
Q 003146 296 LPAVWRRIGRIQGCIVMLVSMLSGN-DPVASHDAGKLLNALSSNTQN----------ALHMAEAGYFKPLVQYLKEG-SD 363 (844)
Q Consensus 296 ~~~~~~~i~~~~g~i~~Lv~lL~s~-d~~~~~~A~~~L~nLs~~~~~----------~~~i~~~g~i~~Lv~~L~~~-~~ 363 (844)
++.+++.+.+ .++.|.+...|..+ ...+.+.+.++++.|..+++. .+.|+..|++..|++.|+.+ ++
T Consensus 178 hE~nrQ~~m~-~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 178 HEVNRQLFME-LKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred hHHHHHHHHH-hhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 5778888887 99999999777543 335777889999999877654 35577889999999999877 45
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHH----HHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHH
Q 003146 364 MSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLE----AKLSALNALQNLSLLAENIQRLVISGIVSPLLQL 439 (844)
Q Consensus 364 ~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~l 439 (844)
..-.....+|..|+..++.+..|.+.|++..|++++.+.+.. .-+.++..|+.|+.+++++..+++.|+.+.++.+
T Consensus 257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHH
Confidence 666678899999999999999999999999999999985443 3457888999999999999999999999999999
Q ss_pred hhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHH
Q 003146 440 LFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIH 519 (844)
Q Consensus 440 L~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~ 519 (844)
+..+.++ +.+.+.++.++ .-||-.. +++...+.+.|+-.
T Consensus 337 ~~~h~~~-p~Vi~~~~a~i--------------------------------------~~l~LR~--pdhsa~~ie~G~a~ 375 (461)
T KOG4199|consen 337 ALRHSDD-PLVIQEVMAII--------------------------------------SILCLRS--PDHSAKAIEAGAAD 375 (461)
T ss_pred HHHcCCC-hHHHHHHHHHH--------------------------------------HHHHhcC--cchHHHHHhcchHH
Confidence 8776543 23344444444 3344333 56677788899999
Q ss_pred HHHHHhccCCH--HHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCC
Q 003146 520 LLLPFLMETNA--NIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSN 590 (844)
Q Consensus 520 ~Lv~ll~~~~~--~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 590 (844)
..++.++.... .++++|+++++|+..++.+. ...+-..+++.|+..-+. ..+.....+-.+|..|..+.
T Consensus 376 ~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-~~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 376 LAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-RTILLANGIEKLIRTAKA-NHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-cchHHhccHHHHHHHHHh-cCccHHHHHHHHHHhcCcch
Confidence 99998886553 69999999999998765432 222223367778776653 44455556667788887643
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.62 E-value=1.4e-12 Score=148.62 Aligned_cols=396 Identities=16% Similarity=0.202 Sum_probs=289.5
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhh
Q 003146 228 AVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRI 306 (844)
Q Consensus 228 p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~ 306 (844)
+.+...|.+.+.+....+..+|+.+.....- .. + ..+..+.+...|.+ +..+|..+++.|.++..++.....+..+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~-~~-l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSP-DS-L-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCH-HH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 4477778777777777788888888654321 11 1 44567788888888 4678999999999998877664554445
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRAS 385 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~ 385 (844)
.+.++.++.++.++|..+...|+.+|.+++.++.+...+...+.+..|..++...++.+|..+..++.+++.. ++....
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999999888888888888899999999988888888899999999765 566777
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcc--hhh-HHHHHHHHHHHh
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVL--MTL-REPASAILARIA 462 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~--~~l-~~~a~~~L~~l~ 462 (844)
+.+.|.++.++..|++.|.-++.+|+..|..|+..+.+...+.+.|+++.|..++.+...++ ..+ .-......++++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 77899999999999998889999999999999998889999999999999999998765433 111 122335566676
Q ss_pred c-Chh-hhc-ccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHH-HhC-C----cHHHHHHHhccCCHHHH
Q 003146 463 Q-SES-ILV-NKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKM-KEN-G----AIHLLLPFLMETNANIR 533 (844)
Q Consensus 463 ~-~~~-~l~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i-~~~-g----~i~~Lv~ll~~~~~~v~ 533 (844)
. ++. +.. -...+..+.+++.+.++..+..|..+|..+|+. .+-+..+ ... + .+..+-....++..++|
T Consensus 278 ~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst---~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 278 RVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST---VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred hcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC---HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 6 332 221 134566777788889999999999999999977 4555555 332 2 35555566667888999
Q ss_pred HHHHHHHHHhhhhhh----HHH---H----HHhchhhHH-HHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCC
Q 003146 534 AAALNLVCTLSKDVY----EEL---A----EQLGDKYLN-ILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTN 601 (844)
Q Consensus 534 ~~A~~~L~~ls~~~~----~~i---~----~~l~~~~l~-~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~ 601 (844)
..+..++.++-.... +.+ . +.+...... .++.+++ .+=++.+.++...|..++......+......|
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~g 433 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQPWGQREICSSPG 433 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHhCcc
Confidence 999999998832221 222 1 223333444 5666665 35589999999999999986666666555556
Q ss_pred ChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHh
Q 003146 602 LLPSLISAATSSTITKTHSTPWLVESVAGILIR 634 (844)
Q Consensus 602 ~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~ 634 (844)
++..+++ .+........+.+...+.+|..
T Consensus 434 fie~lld----r~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 434 FIEYLLD----RSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HHhhhcC----CCCCCCHHHHHHHHHHHHHHHh
Confidence 5554433 3222222223344556666653
No 18
>PRK09687 putative lyase; Provisional
Probab=99.58 E-value=1.1e-13 Score=144.82 Aligned_cols=255 Identities=16% Similarity=0.146 Sum_probs=197.1
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA 552 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~ 552 (844)
.++.|..+|.+.+..+|..++.+|..+-.. ..++.+..++.++++.+|..|++.|..+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-------------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ-------------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-------------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 478899999999999999999999877432 2678889999999999999999999888532110
Q ss_pred HHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHH
Q 003146 553 EQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGIL 632 (844)
Q Consensus 553 ~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL 632 (844)
....++.|..++..+.++.++..|+++|+++...... ....++..+...+.+++. .++..++.+|
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-----~~~~a~~~l~~~~~D~~~-------~VR~~a~~aL 152 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-----YSPKIVEQSQITAFDKST-------NVRFAVAFAL 152 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-----cchHHHHHHHHHhhCCCH-------HHHHHHHHHH
Confidence 1125566777766678899999999999999543321 112234556566665543 4777899999
Q ss_pred HhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccC
Q 003146 633 IRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCF 712 (844)
Q Consensus 633 ~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~ 712 (844)
..+.. + ..++.|+.+|+++++.||..|+.+|+++..+++
T Consensus 153 g~~~~---~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~----------------------------- 191 (280)
T PRK09687 153 SVIND---E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP----------------------------- 191 (280)
T ss_pred hccCC---H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-----------------------------
Confidence 76642 2 368999999999999999999999999843332
Q ss_pred cccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 003146 713 VKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILE 792 (844)
Q Consensus 713 ~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~ 792 (844)
.++++|+..|.+.++.||..|+.+|+.+.... ++++|++.|++++ ++..|+.+|+
T Consensus 192 ----------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~-------------av~~Li~~L~~~~--~~~~a~~ALg 246 (280)
T PRK09687 192 ----------DIREAFVAMLQDKNEEIRIEAIIGLALRKDKR-------------VLSVLIKELKKGT--VGDLIIEAAG 246 (280)
T ss_pred ----------HHHHHHHHHhcCCChHHHHHHHHHHHccCChh-------------HHHHHHHHHcCCc--hHHHHHHHHH
Confidence 26799999999999999999999999976654 7999999998876 6778888887
Q ss_pred HHHhhhhhhHhhccccchhHHhhhh-cCCCCchHHHHHHHHH
Q 003146 793 RIFRIEEHRVKYGESAQVVLIDLAQ-NGDSRLKPAVAKLLAQ 833 (844)
Q Consensus 793 ~i~~~~~~~~~~~~~a~~~Lv~ll~-~~~~~~~~~aa~~L~~ 833 (844)
+|- ...+.+.|..+++ ++|+.++..|-.+|.+
T Consensus 247 ~ig---------~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 247 ELG---------DKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hcC---------CHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 662 1244578899997 8899999999888764
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=1.9e-13 Score=139.68 Aligned_cols=195 Identities=21% Similarity=0.228 Sum_probs=172.2
Q ss_pred HhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc
Q 003146 263 MANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ 340 (844)
Q Consensus 263 i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~ 340 (844)
+.+.+.++.|+.+|.. ++..++.|..++.+.+..+.++..|.+ .|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 4566788999999986 577999999999999999988888887 9999999999999999999999999999999999
Q ss_pred cHHHHHHcCChHHHHHHhccC--CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 003146 341 NALHMAEAGYFKPLVQYLKEG--SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLS 418 (844)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 418 (844)
|+..|-. +++.+++...+. +..++..+.++|.+|+..++++..+. +.+|.|+.+|..|+...|..++++|.|||
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9888743 788888876665 56788899999999999988877775 47999999999999999999999999999
Q ss_pred cCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC
Q 003146 419 LLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS 464 (844)
Q Consensus 419 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~ 464 (844)
.++.+.+.++.+++.+.++.++....+ ..+...++.++.|+..+
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~--~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSES--KENLLRVLTFFENINEN 206 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCc--cHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887754 34667899999999766
No 20
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=142.17 Aligned_cols=481 Identities=16% Similarity=0.122 Sum_probs=306.7
Q ss_pred hcCCChHHHHHHHHHHHHhcc-CCccHHHHHHcCChHHHHHHhccCC--HHHHHHHHHHHHHhhcCc-hhhhhhhhcCch
Q 003146 317 LSGNDPVASHDAGKLLNALSS-NTQNALHMAEAGYFKPLVQYLKEGS--DMSKILMATALSRMELTD-QSRASLGEDGAI 392 (844)
Q Consensus 317 L~s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i 392 (844)
+-+.+|+..-.|..-..|++. +++++..+.+.|+++.+..+++..+ ++.+...+..+..+...+ +....+.+.+.+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 345667776777778888874 7778888999999999999987654 556666777777776654 667778888999
Q ss_pred HHHHHHhhcCC-HHHHHHHHHHHHHhhcCccc---HHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---
Q 003146 393 EPLVRMFRVGK-LEAKLSALNALQNLSLLAEN---IQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--- 465 (844)
Q Consensus 393 ~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~~---~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--- 465 (844)
+.|..+|.+.+ ..++...++++.++-..... ........+++.+..++.-.. ......-+...++++..+
T Consensus 98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l---k~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL---KYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh---hhhhhhhhhhhccccccchhh
Confidence 99999999988 67888999999998765322 222223445555554443121 112223333333444333
Q ss_pred hhhcccchHHHHHHhhccCChHHHHHHHHHHH---HhhcCCCh--hHHHHHHHhCCcHH--HHHHHhccCCHHHHHHHHH
Q 003146 466 SILVNKDVAQQMLSLLNLCSPTIQYHLLHALN---SIAAHSSA--SNVRRKMKENGAIH--LLLPFLMETNANIRAAALN 538 (844)
Q Consensus 466 ~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~---~L~~~~~~--~~~~~~i~~~g~i~--~Lv~ll~~~~~~v~~~A~~ 538 (844)
.++.+.+..+.+.-++...+...|..|+..+. .+..+++. -.......+.|..+ .+..++.+++...+..++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 46777888888888888888899999999998 66666531 23344555677776 6778889998888888888
Q ss_pred HHHHhhhhhh---HHHHHH-h---chhhHHHHHHHhcCCCCHHH--HHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHH
Q 003146 539 LVCTLSKDVY---EELAEQ-L---GDKYLNILVDITLSSTSENE--KAAAVGILSNLPVSNKKATELLKKTNLLPSLISA 609 (844)
Q Consensus 539 ~L~~ls~~~~---~~i~~~-l---~~~~l~~Lv~lL~~~~~~~~--~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~l 609 (844)
++..+-+.+- ..++.. . +...+- ....+.--.++-. ...++.+.+.++.--..++....+...++.+.++
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~-q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~el 333 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIV-QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTEL 333 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHH-HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHH
Confidence 7766654431 111111 0 110111 1111110111111 1122233333322123445556677778888887
Q ss_pred hhcCCCCCCCCchh---HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCcccc
Q 003146 610 ATSSTITKTHSTPW---LVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLR 686 (844)
Q Consensus 610 l~~~~~~~~~~~~~---l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~ 686 (844)
+..+..-. ..... +.-+-...+..++.+.....++.+.+......+..+....+.+...+|+.++.+++.+...++
T Consensus 334 lf~~~sl~-a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 334 LFICASLA-ASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHHh-hcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 75432100 00000 001111122223332222333444444444444455556677888888999999998877766
Q ss_pred ccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhc
Q 003146 687 KSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKL 766 (844)
Q Consensus 687 ~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~ 766 (844)
..+-...++.|||++|.+++..|...+++||+|++.+....+ ......
T Consensus 413 ------------------------------tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k--skfl~~ 460 (678)
T KOG1293|consen 413 ------------------------------TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK--SKFLRN 460 (678)
T ss_pred ------------------------------cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH--HHHHHc
Confidence 113456789999999999999999999999999998875322 346679
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHHhhh-hhh--HhhccccchhHHhhhhcCCCCchHHHHHHHHHH
Q 003146 767 SGTQAIIKVLESGNAKAQEKALWILERIFRIE-EHR--VKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 767 g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~-~~~--~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l 834 (844)
|||..+...+.+.++.+|.+++|+|..+.... +.. +-++.-...-+.++..+.|+.|++.+-..|++|
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998884433 222 222222234677888999999999999999987
No 21
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=5.6e-13 Score=139.57 Aligned_cols=254 Identities=18% Similarity=0.112 Sum_probs=197.7
Q ss_pred ChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHH
Q 003146 432 IVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRK 511 (844)
Q Consensus 432 ~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 511 (844)
-++.|+.+|.+.+ ..++..++..|..+. ...+++.+..++.+.++.+|..++++|..|..... .
T Consensus 24 ~~~~L~~~L~d~d---~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHN---SLKRISSIRVLQLRG-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---C--- 87 (280)
T ss_pred cHHHHHHHHhCCC---HHHHHHHHHHHHhcC-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---c---
Confidence 4678999997665 458899999998773 44577888899999999999999999999864321 0
Q ss_pred HHhCCcHHHHHHH-hccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCC
Q 003146 512 MKENGAIHLLLPF-LMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSN 590 (844)
Q Consensus 512 i~~~g~i~~Lv~l-l~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 590 (844)
....++.|..+ ++++++.||..|+.+|..+....... ....+..+...+. +++..++..++.+|+++..
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAF-DKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhh-CCCHHHHHHHHHHHhccCC--
Confidence 12257778777 67888999999999998874322111 1123444555555 4588999999999998853
Q ss_pred HHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 003146 591 KKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSS 670 (844)
Q Consensus 591 ~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~ 670 (844)
..+++.|+.++.+++. .++..|+.+|+++.. .++ .+++.|+.+|.+.++.||..
T Consensus 158 ---------~~ai~~L~~~L~d~~~-------~VR~~A~~aLg~~~~-~~~---------~~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNG-------DVRNWAAFALNSNKY-DNP---------DIREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred ---------HHHHHHHHHHhcCCCH-------HHHHHHHHHHhcCCC-CCH---------HHHHHHHHHhcCCChHHHHH
Confidence 3468899999987653 578899999998832 233 35688999999999999999
Q ss_pred HHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhh
Q 003146 671 ASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASL 750 (844)
Q Consensus 671 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L 750 (844)
|+++|+.+.. ..++++|+..|.+++ ++..|+.||+++
T Consensus 212 A~~aLg~~~~-----------------------------------------~~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 212 AIIGLALRKD-----------------------------------------KRVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHccCC-----------------------------------------hhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 9999998662 248899999999866 778899999999
Q ss_pred hccccchhhhHHHHhcCChHHHHHHhh-cCCHHHHHHHHHHHHH
Q 003146 751 LQDETWESGSNYLAKLSGTQAIIKVLE-SGNAKAQEKALWILER 793 (844)
Q Consensus 751 ~~~~~~~~~~~~i~~~g~i~~lv~ll~-~~~~~~~~~A~~~L~~ 793 (844)
.... +++.|.+++. ++++.++.+|.++|.+
T Consensus 249 g~~~-------------a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 249 GDKT-------------LLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred CCHh-------------HHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 8765 7999999994 8999999999999875
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.53 E-value=8.7e-12 Score=129.16 Aligned_cols=398 Identities=18% Similarity=0.144 Sum_probs=283.6
Q ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC----CH----HHHHHHHHHHHHccC
Q 003146 224 AEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR----DV----EEQREAVGLLLDLSD 295 (844)
Q Consensus 224 ~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~----~~----~~~~~A~~~L~~Ls~ 295 (844)
.+.+..+.+...|++.++..+..++|+|+++.+.+++..+.+.||-..++..|.. +. +--..+...|.|..-
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 3467778888888899999999999999999999999999999998888888865 21 123346678888776
Q ss_pred C-ChhHHHHhhhhCcHHHHHHhhc--CCChHHHHHHHHHHHHhcc-CCcc-HHHHHHcCChHHHHHHhccC-CHHHHHHH
Q 003146 296 L-PAVWRRIGRIQGCIVMLVSMLS--GNDPVASHDAGKLLNALSS-NTQN-ALHMAEAGYFKPLVQYLKEG-SDMSKILM 369 (844)
Q Consensus 296 ~-~~~~~~i~~~~g~i~~Lv~lL~--s~d~~~~~~A~~~L~nLs~-~~~~-~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a 369 (844)
. ...+....+ .|+++.|...+. -.+....+.......||.+ ..++ .....+......++++|.+. .+..+.-.
T Consensus 166 ~~~~l~aq~~~-~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 166 DSRELRAQVAD-AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CcHHHHHHHHh-cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 5 566777776 999999999874 3555556665555556543 2222 33333455666677777654 33455566
Q ss_pred HHHHHHhhcCchhhhhhhhcCchHHHHHHhhc-CCHHHHHHHH-------HHHHHhhcCcccHHHHHHcC-ChHHHHHHh
Q 003146 370 ATALSRMELTDQSRASLGEDGAIEPLVRMFRV-GKLEAKLSAL-------NALQNLSLLAENIQRLVISG-IVSPLLQLL 440 (844)
Q Consensus 370 a~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~-------~aL~nLs~~~~~~~~i~~~g-~v~~Lv~lL 440 (844)
..+|...+.++..|-.+.+.|.++.++.+++. .+...+.++. ....-|...++.-+.+...| .+..++..+
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 77888899999999999999999999999987 3333333333 22223334455445555544 667778888
Q ss_pred hccCCcchhhHHHHHHHHHHHhcChh---hhcccchHHHHHHhhcc-----CChHHHHHHHHHHHHhhcCCChhHHHHHH
Q 003146 441 FSVTSVLMTLREPASAILARIAQSES---ILVNKDVAQQMLSLLNL-----CSPTIQYHLLHALNSIAAHSSASNVRRKM 512 (844)
Q Consensus 441 ~~~~~~~~~l~~~a~~~L~~l~~~~~---~l~~~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~i 512 (844)
.+.+. .+...+.-+++|++..+. .+.+.+.+..|++.+.. ++-+.+..++.+|.|+.-. ..++..+
T Consensus 325 ~S~d~---~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP---v~nka~~ 398 (604)
T KOG4500|consen 325 RSDDS---NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP---VSNKAHF 398 (604)
T ss_pred cCCch---hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc---CCchhhc
Confidence 77764 467788888999999874 56778899999998864 5667889999999999865 5678889
Q ss_pred HhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc--hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCC-
Q 003146 513 KENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG--DKYLNILVDITLSSTSENEKAAAVGILSNLPVS- 589 (844)
Q Consensus 513 ~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~--~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~- 589 (844)
...|..+.++..+....|.+..+-...++.+. +..+.+...+. +..+..|+..-++++-..+....-+.+..+..+
T Consensus 399 ~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~-d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs 477 (604)
T KOG4500|consen 399 APAGVTEAILLQLKLASPPVTFKLLGTLRMIR-DSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHS 477 (604)
T ss_pred cccchHHHHHHHHHhcCCcchHHHHHHHHHHH-hchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhh
Confidence 99999999999999999999988888887664 33343444433 346788888877655444444444455555443
Q ss_pred -CHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhcc
Q 003146 590 -NKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 590 -~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~ 636 (844)
...+...+.+.|+++..+..+...+. -+++.++-+|+...
T Consensus 478 ~~kdv~~tvpksg~ik~~Vsm~t~~hi-------~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 478 KYKDVILTVPKSGGIKEKVSMFTKNHI-------NMQNEALVALLSTE 518 (604)
T ss_pred HhhhhHhhccccccHHHHHHHHHHhhH-------HHhHHHHHHHHHHH
Confidence 23456677789999999999976653 25667777666543
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-11 Score=127.70 Aligned_cols=357 Identities=12% Similarity=0.148 Sum_probs=261.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCC---CC----chHHHHHHHHHHHhHhcCh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGS---SK----PYNRLIMIQILRNLASENA 257 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s---~~----~~~~~~a~~~L~~L~~~~~ 257 (844)
++-+.....+.+.+......+.+.++|+|+..+|..|.+.|.-.++++.|++ .+ .+..-.+...|.|-+-++.
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 3444444455544456677788999999999999988887777778888762 22 2444455667777776676
Q ss_pred hhHHHHhcCCcHHHHHHHhc---------------------------------------------C--CHHHHHHHHHHH
Q 003146 258 DYKEKMANVGSLSALVKSLT---------------------------------------------R--DVEEQREAVGLL 290 (844)
Q Consensus 258 ~~~~~i~~~g~i~~Lv~~L~---------------------------------------------~--~~~~~~~A~~~L 290 (844)
+.+..+.+.|.++.|...+. + .++.++.....|
T Consensus 169 ~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil 248 (604)
T KOG4500|consen 169 ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL 248 (604)
T ss_pred HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence 66666666666554443332 1 011122334455
Q ss_pred HHccCCChhHHHHhhhhCcHHHHHHhhcC-CC-------hHHHHHHHHHHHHhccCCccHHHHHHcC-ChHHHHHHhccC
Q 003146 291 LDLSDLPAVWRRIGRIQGCIVMLVSMLSG-ND-------PVASHDAGKLLNALSSNTQNALHMAEAG-YFKPLVQYLKEG 361 (844)
Q Consensus 291 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~d-------~~~~~~A~~~L~nLs~~~~~~~~i~~~g-~i~~Lv~~L~~~ 361 (844)
...+.++.++-.+.+ .|.+..++++++. .+ -..-..++....-|...++.-..+...| .++.++.++.+.
T Consensus 249 a~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~ 327 (604)
T KOG4500|consen 249 AKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD 327 (604)
T ss_pred HHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC
Confidence 555666667777776 8888888888853 21 1223345555555566677666666655 788999999999
Q ss_pred CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhc-----CCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHH
Q 003146 362 SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRV-----GKLEAKLSALNALQNLSLLAENIQRLVISGIVSPL 436 (844)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~L 436 (844)
+......++-+++|++.+|+++..+.+.|.+..|++.|.. |+.+.+.+++.||+||.....|+..++.+|++..+
T Consensus 328 d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 328 DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAI 407 (604)
T ss_pred chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHH
Confidence 9888888999999999999999999999999999998853 66788999999999999999999999999999999
Q ss_pred HHHhhccCCcchhhHHHHHHHHHHHhcChh-----hhcccchHHHHHHhhccCChH-HHHHHHHHHHHhhcCCChhHHHH
Q 003146 437 LQLLFSVTSVLMTLREPASAILARIAQSES-----ILVNKDVAQQMLSLLNLCSPT-IQYHLLHALNSIAAHSSASNVRR 510 (844)
Q Consensus 437 v~lL~~~~~~~~~l~~~a~~~L~~l~~~~~-----~l~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~ 510 (844)
+..++...+. +...-..++.-+..+.+ ...+...+..|+++-++++.. +--...+.|..+-+|.-..++..
T Consensus 408 L~~lk~~~pp---v~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~ 484 (604)
T KOG4500|consen 408 LLQLKLASPP---VTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVIL 484 (604)
T ss_pred HHHHHhcCCc---chHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHh
Confidence 9999887653 44566666666655542 344556788999998887765 66778889999988853355556
Q ss_pred HHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003146 511 KMKENGAIHLLLPFLMETNANIRAAALNLVCTLSK 545 (844)
Q Consensus 511 ~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~ 545 (844)
.+.+.|++...+.++...+-.++..|.-++..++.
T Consensus 485 tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 485 TVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 67789999999999999999999999888866643
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.9e-11 Score=121.71 Aligned_cols=297 Identities=15% Similarity=0.212 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhC--CCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHh
Q 003146 199 NLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLG--SSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSL 276 (844)
Q Consensus 199 ~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~--s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L 276 (844)
....++..+..+....+ +++... ....++.+|. +++.++....+.++..-+..++.++..+++.+..+.+.+-|
T Consensus 123 ~l~ksL~al~~lt~~qp---dl~da~-g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l 198 (461)
T KOG4199|consen 123 VLKKSLEAINSLTHKQP---DLFDAE-AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVL 198 (461)
T ss_pred HHHHHHHHHHHhhcCCc---chhccc-cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Confidence 44455555555553322 344444 3556777764 56778888888999988888989999999999999999888
Q ss_pred cC-C-HHHHHHHHHHHHHccCCCh----------hHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccHH
Q 003146 277 TR-D-VEEQREAVGLLLDLSDLPA----------VWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNAL 343 (844)
Q Consensus 277 ~~-~-~~~~~~A~~~L~~Ls~~~~----------~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~ 343 (844)
.+ + .+..+++.+.++-|..+++ ..+.|.+ .|+...|++.+.. -||.+...++.+|..|+..++.+.
T Consensus 199 ~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~ 277 (461)
T KOG4199|consen 199 NREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICK 277 (461)
T ss_pred cccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 76 3 3567788899998877664 3456666 7889999999874 578999999999999999999999
Q ss_pred HHHHcCChHHHHHHhccCC-HHHH---HHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh--cCCHHHHHHHHHHHHHh
Q 003146 344 HMAEAGYFKPLVQYLKEGS-DMSK---ILMATALSRMELTDQSRASLGEDGAIEPLVRMFR--VGKLEAKLSALNALQNL 417 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~-~~~~---~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nL 417 (844)
.|.+.|++..|++.+.+.+ ...| ..+...|..|+.+|.+|..|.+.|+.+.++.++. ..+|.+-+.++.++.-|
T Consensus 278 ~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l 357 (461)
T KOG4199|consen 278 SIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISIL 357 (461)
T ss_pred HHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 9999999999999998843 3344 4777888999999999999999999999999875 46788889999999999
Q ss_pred hcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHH
Q 003146 418 SLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHL 492 (844)
Q Consensus 418 s~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a 492 (844)
+.. |++...+++.|+-...++.|+.++.. ..++..+++.+.|++... .++. ..++..|+..-+...+..+..+
T Consensus 358 ~LR~pdhsa~~ie~G~a~~avqAmkahP~~-a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~tce~~a 435 (461)
T KOG4199|consen 358 CLRSPDHSAKAIEAGAADLAVQAMKAHPVA-AQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHETCEAAA 435 (461)
T ss_pred HhcCcchHHHHHhcchHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCccHHHHH
Confidence 964 78889999999999999999987642 457899999999998775 2322 3567888888788888888888
Q ss_pred HHHHHHhhcC
Q 003146 493 LHALNSIAAH 502 (844)
Q Consensus 493 ~~~L~~L~~~ 502 (844)
-.+|..|..+
T Consensus 436 kaALRDLGc~ 445 (461)
T KOG4199|consen 436 KAALRDLGCD 445 (461)
T ss_pred HHHHHhcCcc
Confidence 8888888655
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.50 E-value=4.4e-12 Score=154.91 Aligned_cols=278 Identities=17% Similarity=0.149 Sum_probs=215.3
Q ss_pred HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHH
Q 003146 429 ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNV 508 (844)
Q Consensus 429 ~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 508 (844)
+.+.++.|+..|.+.+ ..+|..|+..|..+. ..+.++.|+.+|+++++.+|..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d---~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPD---PGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred cchhHHHHHHHhcCCC---HHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 3456778888887665 458899999998763 4567889999999999999999999998774321
Q ss_pred HHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 003146 509 RRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPV 588 (844)
Q Consensus 509 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 588 (844)
...+.|...|.++++.+|..|+..|..+... ....|+..|. +.++.++..|+.+|..+..
T Consensus 684 -------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~-D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 684 -------PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALG-DPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred -------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhc-CCCHHHHHHHHHHHhcccC
Confidence 1235778888999999999999988766321 1123556665 5788999999999988732
Q ss_pred CCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 003146 589 SNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAK 668 (844)
Q Consensus 589 ~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk 668 (844)
.+.|..++.+++. .++..++.+|..+.... ...++.|..+++++++.+|
T Consensus 744 --------------~~~l~~~l~D~~~-------~VR~~aa~aL~~~~~~~----------~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 744 --------------VESVAGAATDENR-------EVRIAVAKGLATLGAGG----------APAGDAVRALTGDPDPLVR 792 (897)
T ss_pred --------------cHHHHHHhcCCCH-------HHHHHHHHHHHHhcccc----------chhHHHHHHHhcCCCHHHH
Confidence 2346667766653 57778999988776421 1337889999999999999
Q ss_pred HHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHH
Q 003146 669 SSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALA 748 (844)
Q Consensus 669 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~ 748 (844)
..|+.+|+++.... .++..|+..|.++++.||.+|+.||.
T Consensus 793 ~aA~~aLg~~g~~~----------------------------------------~~~~~l~~aL~d~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 793 AAALAALAELGCPP----------------------------------------DDVAAATAALRASAWQVRQGAARALA 832 (897)
T ss_pred HHHHHHHHhcCCcc----------------------------------------hhHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999876321 13467899999999999999999999
Q ss_pred hhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhhhcCCCCchHHHH
Q 003146 749 SLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVA 828 (844)
Q Consensus 749 ~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa 828 (844)
.+.... ++++|+.+|.++++.+|..|+++|.++- ....+...|..++.+.|+.||+.|.
T Consensus 833 ~l~~~~-------------a~~~L~~~L~D~~~~VR~~A~~aL~~~~--------~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 833 GAAADV-------------AVPALVEALTDPHLDVRKAAVLALTRWP--------GDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred hccccc-------------hHHHHHHHhcCCCHHHHHHHHHHHhccC--------CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 886544 6789999999999999999999998751 1113356888999999999999999
Q ss_pred HHHHH
Q 003146 829 KLLAQ 833 (844)
Q Consensus 829 ~~L~~ 833 (844)
++|.+
T Consensus 892 ~aL~~ 896 (897)
T PRK13800 892 RALAH 896 (897)
T ss_pred HHHhh
Confidence 99975
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.47 E-value=7.3e-11 Score=134.68 Aligned_cols=356 Identities=18% Similarity=0.188 Sum_probs=264.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMA 264 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 264 (844)
.+.+...|.+.++....-++..+.++..+++....++.+.+++|.++..|.+++..+...|..+|+.++... .+-..+.
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~ 157 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLF 157 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHh
Confidence 456777888888877777888888888877655678888889999999999999999999999999998643 4445677
Q ss_pred cCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC-hhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccH
Q 003146 265 NVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP-AVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNA 342 (844)
Q Consensus 265 ~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~ 342 (844)
+.+.+..|..++.. +...|..+...+.++++.+ +....+.. .|.++.++..|.++|.-++.+++.+|..|+..+.+.
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 88889999999988 6678889999999998764 45555555 999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHhccCCHHH-----HH-HHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 003146 343 LHMAEAGYFKPLVQYLKEGSDMS-----KI-LMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQN 416 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~-----~~-~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 416 (844)
..+.+.|.++.|+.++....... .. ......++++..+..+..-.-+..+..|.+++.+.++..+..|..+++.
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ 316 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 99999999999999997653221 11 2224556666642222211114556667778888999999999999999
Q ss_pred hhcCcccHHHH-HH-cCChHHHHHHhhcc-CCcchhhHHHHHHHHHHHhcCh------hh---------hcccchHH-HH
Q 003146 417 LSLLAENIQRL-VI-SGIVSPLLQLLFSV-TSVLMTLREPASAILARIAQSE------SI---------LVNKDVAQ-QM 477 (844)
Q Consensus 417 Ls~~~~~~~~i-~~-~g~v~~Lv~lL~~~-~~~~~~l~~~a~~~L~~l~~~~------~~---------l~~~~~i~-~L 477 (844)
+++..+.+..+ .. .+.++..+...... ...+..++..++.+|.++-..+ .+ ....+... .+
T Consensus 317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 99998888877 44 34555555544432 2223468899999999994432 11 11223334 77
Q ss_pred HHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 478 LSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 478 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
+++++.+=|++|..+.+.|..||.++ -..+.....+|.+..|+.--.+.+.+.++.=-.++..|+
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~--Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQP--WGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCH--HHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 88888888999999999999999985 455556667777777776655556555443333333333
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.47 E-value=1e-11 Score=151.73 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=215.7
Q ss_pred cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh
Q 003146 389 DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL 468 (844)
Q Consensus 389 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l 468 (844)
...++.|+..|.++++.+|+.|+.+|..+. ..++++.|+.+|.+.+ ..++..|+..|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d---~~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGA---AAVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhcc---
Confidence 467789999999999999999999998775 3456888999996654 458899999998875321
Q ss_pred cccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 469 VNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 469 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
...+.|...|.++++.+|..++.+|..+... -...|+..|.++++.+|..|+..|..+..
T Consensus 684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~--- 743 (897)
T PRK13800 684 ---PPAPALRDHLGSPDPVVRAAALDVLRALRAG--------------DAALFAAALGDPDHRVRIEAVRALVSVDD--- 743 (897)
T ss_pred ---CchHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence 2245677888889999999999999876422 23467889999999999999999876521
Q ss_pred HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHH
Q 003146 549 EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESV 628 (844)
Q Consensus 549 ~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a 628 (844)
.+.|...+. +++.+++..++.+|..+.... ...++.|..++.+++. .++..+
T Consensus 744 -----------~~~l~~~l~-D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~-------~VR~aA 795 (897)
T PRK13800 744 -----------VESVAGAAT-DENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDP-------LVRAAA 795 (897)
T ss_pred -----------cHHHHHHhc-CCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCH-------HHHHHH
Confidence 122445555 578899999999999985532 2347788888877653 577889
Q ss_pred HHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccc
Q 003146 629 AGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHD 708 (844)
Q Consensus 629 ~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~ 708 (844)
+.+|..+..+. ..++.+...|+++++.||..|+.+|+.+..
T Consensus 796 ~~aLg~~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------------------------- 836 (897)
T PRK13800 796 LAALAELGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAA---------------------------- 836 (897)
T ss_pred HHHHHhcCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------------------------
Confidence 99998876421 123568889999999999999999998762
Q ss_pred cccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHH
Q 003146 709 GYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKAL 788 (844)
Q Consensus 709 ~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~ 788 (844)
..++++|+.+|.+++..||.+|+.||..+..+. ...+.|...+++.++.||..|.
T Consensus 837 -------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~------------~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 837 -------------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDP------------AARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred -------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH------------HHHHHHHHHHhCCCHHHHHHHH
Confidence 236799999999999999999999999973222 1467788999999999999999
Q ss_pred HHHH
Q 003146 789 WILE 792 (844)
Q Consensus 789 ~~L~ 792 (844)
.+|+
T Consensus 892 ~aL~ 895 (897)
T PRK13800 892 RALA 895 (897)
T ss_pred HHHh
Confidence 9885
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.45 E-value=2.1e-10 Score=133.89 Aligned_cols=497 Identities=18% Similarity=0.205 Sum_probs=320.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHH
Q 003146 196 DDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKS 275 (844)
Q Consensus 196 ~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~ 275 (844)
+.....+++..+..++..... +. ...+..++++.+++...+...-.++..+...+++ ..+. .+..+.+-
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~----~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l---~~n~l~kd 87 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYD----IS--FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLIL---IINSLQKD 87 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCC----Cc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHH---HHHHHHHh
Confidence 444556677666555543321 11 3577788888888888888887888877655544 1222 45667777
Q ss_pred hcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHH
Q 003146 276 LTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPL 354 (844)
Q Consensus 276 L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~L 354 (844)
|.+ ++..|..|+..|.++. .++.. ...++.+.+++.++++.++..|+.++.++....+. .+... .++.+
T Consensus 88 l~~~n~~~~~lAL~~l~~i~-~~~~~------~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l 157 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR-TPEMA------EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKL 157 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--SHHHH------HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHH
T ss_pred hcCCCHHHHHHHHhhhhhhc-ccchh------hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHH
Confidence 777 5668889999999876 33222 33567888999999999999999999998753222 11122 58889
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChH
Q 003146 355 VQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVS 434 (844)
Q Consensus 355 v~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~ 434 (844)
.++|.+.++.++..|..++..+...++.-..+. ...++.|.+++...++-.+...++.|..++........ ....++
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~ 234 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIE 234 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHHccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHH
Confidence 999999999999999999988822221111111 23445556666788999999999999988865432220 034567
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHh
Q 003146 435 PLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKE 514 (844)
Q Consensus 435 ~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 514 (844)
.+..++.+.+ ..+.-.+..++..+..... .-..+++.|..++.++++.+|..++..|..++... ...+.
T Consensus 235 ~l~~~l~s~~---~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-----~~~v~- 303 (526)
T PF01602_consen 235 PLLNLLQSSS---PSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-----PPAVF- 303 (526)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-----HHHHG-
T ss_pred HHHHHhhccc---cHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-----chhhh-
Confidence 7888887554 4567788888888876655 23357899999999999999999999999998764 12222
Q ss_pred CCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHH
Q 003146 515 NGAIHLLLPFLM-ETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKA 593 (844)
Q Consensus 515 ~g~i~~Lv~ll~-~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 593 (844)
.....+..+. +++..+|..+..+|..++...+ +.. .++.|...+.+..+.+.+..++..++.++...+..
T Consensus 304 --~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n--~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 304 --NQSLILFFLLYDDDPSIRKKALDLLYKLANESN--VKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp --THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH--HHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred --hhhhhhheecCCCChhHHHHHHHHHhhcccccc--hhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch
Confidence 2233334444 8888999999999999875433 111 45567777754557777777777777775422221
Q ss_pred HHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHH
Q 003146 594 TELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS-ESVVAKSSAS 672 (844)
Q Consensus 594 ~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vk~~Aa 672 (844)
..+ .++.+++++..+... +...++..+.++... +++.+. .++..|++.+.+ .++.++..++
T Consensus 375 ~~~-----~v~~l~~ll~~~~~~-------~~~~~~~~i~~ll~~-~~~~~~-----~~l~~L~~~l~~~~~~~~~~~~~ 436 (526)
T PF01602_consen 375 AEW-----YVDTLLKLLEISGDY-------VSNEIINVIRDLLSN-NPELRE-----KILKKLIELLEDISSPEALAAAI 436 (526)
T ss_dssp HHH-----HHHHHHHHHHCTGGG-------CHCHHHHHHHHHHHH-STTTHH-----HHHHHHHHHHTSSSSHHHHHHHH
T ss_pred HHH-----HHHHHHHhhhhcccc-------ccchHHHHHHHHhhc-ChhhhH-----HHHHHHHHHHHHhhHHHHHHHHH
Confidence 222 356788888764321 233455555554432 232222 236778888875 5788999999
Q ss_pred HHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhc
Q 003146 673 ISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQ 752 (844)
Q Consensus 673 ~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~ 752 (844)
|.+|..+....+. . .....+..++......++.++...+.++..+..
T Consensus 437 wilGEy~~~~~~~-------------------------------~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 437 WILGEYGELIENT-------------------------------E--SAPDILRSLIENFIEESPEVKLQILTALAKLFK 483 (526)
T ss_dssp HHHHHHCHHHTTT-------------------------------T--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCccccc-------------------------------c--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 9999988643320 0 011234566666677788899999999999886
Q ss_pred cccchhhhHHHHhcCChHHHHHHhh--cCCHHHHHHHHHHHH
Q 003146 753 DETWESGSNYLAKLSGTQAIIKVLE--SGNAKAQEKALWILE 792 (844)
Q Consensus 753 ~~~~~~~~~~i~~~g~i~~lv~ll~--~~~~~~~~~A~~~L~ 792 (844)
....++.... -...+..+.. +.++++|.+|...+.
T Consensus 484 ~~~~~~~~~~-----i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 484 RNPENEVQNE-----ILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HSCSTTHHHH-----HHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred hCCchhhHHH-----HHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 5421111111 1333444445 779999999998764
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.2e-10 Score=120.14 Aligned_cols=380 Identities=15% Similarity=0.167 Sum_probs=271.5
Q ss_pred HHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCH
Q 003146 284 REAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSD 363 (844)
Q Consensus 284 ~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~ 363 (844)
+.|+..|.+|+.+-..-..+.. .+.+..||..|..++.+.....+..|..||...+|+..|.+.|.+..|++++...++
T Consensus 281 rva~ylLlNlAed~~~ElKMrr-kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRR-KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHH-HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence 4588999999998777777776 889999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc
Q 003146 364 MSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV 443 (844)
Q Consensus 364 ~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~ 443 (844)
+.+......|+|++.+...+..+...|.+|.|+.+|.+.+. +.-|+..|+.++.++..+..+....+|+.++..+..+
T Consensus 360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999986543 4568889999999999999998899999999888777
Q ss_pred CCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHh-hccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHH
Q 003146 444 TSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSL-LNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIH 519 (844)
Q Consensus 444 ~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~ 519 (844)
.+.... -...+.--|++-.. .++....++..|++. +++.++- ....+.++++|.++ .+..+.+ .+.
T Consensus 438 ~~~~vd--l~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~--tqn~Fid--yvg 507 (791)
T KOG1222|consen 438 TGSEVD--LALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGA--TQNMFID--YVG 507 (791)
T ss_pred CCceec--HHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccch--HHHHHHH--HHH
Confidence 653222 22333335676654 455555667766653 3333432 34567888888642 3334333 566
Q ss_pred HHHHHhccCCH-HHHHHHHHHHHHhhhh-hhHHHHHHhchh-hHHHHHHHhcCCCC-HHHHHHHHHHHhcCCCCCHHHHH
Q 003146 520 LLLPFLMETNA-NIRAAALNLVCTLSKD-VYEELAEQLGDK-YLNILVDITLSSTS-ENEKAAAVGILSNLPVSNKKATE 595 (844)
Q Consensus 520 ~Lv~ll~~~~~-~v~~~A~~~L~~ls~~-~~~~i~~~l~~~-~l~~Lv~lL~~~~~-~~~~~~a~~~L~~L~~~~~~~~~ 595 (844)
-|...+...+. .....+...+.+|.-. .+- ...+... .++-+-..|....+ .+.+....-+++..+. +.....
T Consensus 508 dLa~i~~nd~~E~F~~EClGtlanL~v~dldw--~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~ 584 (791)
T KOG1222|consen 508 DLAGIAKNDNSESFGLECLGTLANLKVTDLDW--AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCAR 584 (791)
T ss_pred HHHHHhhcCchHHHHHHHHHHHhhcccCCCCH--HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHH
Confidence 66666666554 4556677777777531 111 1112211 33444444443222 2333333444555555 566777
Q ss_pred HHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHH
Q 003146 596 LLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSV-QHGVIRLLVKLLSSESVVAKSSASIS 674 (844)
Q Consensus 596 ~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~vk~~Aa~a 674 (844)
.+..++.++.++.+|+.... .+++.-..+.+...+..- .-.++.+. +...-..|++++++.+..+|+-+-.+
T Consensus 585 Lla~a~~i~tlieLL~a~Qe-----DDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~ 657 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQE-----DDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNA 657 (791)
T ss_pred HhCccccHHHHHHHHHhhcc-----cchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHH
Confidence 88889999999999976543 234555666666655542 22233343 44555689999999999999999999
Q ss_pred HHHHhhcCcccc
Q 003146 675 LAQLSQNSLSLR 686 (844)
Q Consensus 675 L~~ls~~~~~~~ 686 (844)
|--++..+..-.
T Consensus 658 LdIiae~d~EWA 669 (791)
T KOG1222|consen 658 LDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHhhHHHH
Confidence 998888766543
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.1e-09 Score=122.05 Aligned_cols=463 Identities=17% Similarity=0.203 Sum_probs=295.3
Q ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhC-CCCchHHHHHHHHHHHhHhc-ChhhHH
Q 003146 184 GIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLG-SSKPYNRLIMIQILRNLASE-NADYKE 261 (844)
Q Consensus 184 ~i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~-~~~~~~ 261 (844)
.+..|+..+.+.+......|-+.+..+...+ .+.|.|..++. +.++++|.-+...+|.+... |..-..
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~ 74 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTE----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSA 74 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhccc----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4567788888887776556666666555443 27899999987 56899999999999988765 432111
Q ss_pred HHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003146 262 KMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT 339 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~ 339 (844)
.. ....-..++..+.+ .+.+|+.-+..+..+++..--. +..+.++.|+...+|+|+..|+.|..+|..+...-
T Consensus 75 e~-~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~ 149 (1075)
T KOG2171|consen 75 EV-QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETF 149 (1075)
T ss_pred HH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhh
Confidence 10 01112234444444 2357888888888887753111 23667888888889999999999999999987432
Q ss_pred cc--HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-hhhhhhhh-cCchHHHHHHh----hcCCHHHHHHHH
Q 003146 340 QN--ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD-QSRASLGE-DGAIEPLVRMF----RVGKLEAKLSAL 411 (844)
Q Consensus 340 ~~--~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL----~~~~~~~~~~A~ 411 (844)
.+ +..+. ...+.+.+-+.+++..+|..+++++..++... +++..... ...+|.++..+ ..++...-..+.
T Consensus 150 ~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l 227 (1075)
T KOG2171|consen 150 GNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSAL 227 (1075)
T ss_pred ccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHH
Confidence 22 22221 12333444455566669999999998877643 34333333 34556555555 456666667777
Q ss_pred HHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh------cccchHHHHHHhhccC
Q 003146 412 NALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL------VNKDVAQQMLSLLNLC 484 (844)
Q Consensus 412 ~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l------~~~~~i~~Lv~lL~~~ 484 (844)
.+|--|... +..-...+. .+|..-+.+..+..- ...+|..|+.+|..++.....+ .....++.++.++...
T Consensus 228 ~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l-~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~ 305 (1075)
T KOG2171|consen 228 EALIELLESEPKLLRPHLS-QIIQFSLEIAKNKEL-ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEE 305 (1075)
T ss_pred HHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccc-cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCc
Confidence 788777754 332222211 133334444444433 3457889999999888773111 1112344444444221
Q ss_pred --C--------------hHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 485 --S--------------PTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 485 --~--------------~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
+ ......|.++|-.++.+-+.+.+... .++.+-.++++.+..-|.+|+-+|..++....
T Consensus 306 ~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~-----~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 306 EDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPP-----LFEALEAMLQSTEWKERHAALLALSVIAEGCS 380 (1075)
T ss_pred ccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH
Confidence 1 11344567777777666543333332 46677788899999999999999999988776
Q ss_pred HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHH
Q 003146 549 EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESV 628 (844)
Q Consensus 549 ~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a 628 (844)
+.+...+. ..++..+..|. ++++.+|.+|+-+++.++.+-..-.+.-..+-.+|.|+..+.+... + .+..+|
T Consensus 381 ~~m~~~l~-~Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~-~-----rV~ahA 452 (1075)
T KOG2171|consen 381 DVMIGNLP-KILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQN-V-----RVQAHA 452 (1075)
T ss_pred HHHHHHHH-HHHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCc-h-----HHHHHH
Confidence 65544433 35666667776 5889999999999999988655555555667788889998876542 2 366789
Q ss_pred HHHHHhccCCCCHHHHHHHHHcCCHHHHH-----HHhccCCHHHHHHHHHHHHHHhhcCc
Q 003146 629 AGILIRFTDPSDKKLQQYSVQHGVIRLLV-----KLLSSESVVAKSSASISLAQLSQNSL 683 (844)
Q Consensus 629 ~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv-----~lL~~~~~~vk~~Aa~aL~~ls~~~~ 683 (844)
+.++.+|......... ..++|.|+ .+++++++.+|..+..+++..+....
T Consensus 453 a~al~nf~E~~~~~~l-----~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 453 AAALVNFSEECDKSIL-----EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHhCcHHHH-----HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 9999988875444322 13344333 45678899999999999999886543
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=3.9e-10 Score=131.63 Aligned_cols=473 Identities=17% Similarity=0.188 Sum_probs=319.2
Q ss_pred CcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChh-HHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHH
Q 003146 267 GSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAV-WRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALH 344 (844)
Q Consensus 267 g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~ 344 (844)
.+....++++.+ +...++.+--.+..+...+.. ... ++..+.+=|.++++.++..|..+|.++.. ..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~ 110 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLNSPNPYIRGLALRTLSNIRT-----PE 110 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cc
Confidence 356777888876 566777766666666554322 111 45567777889999999999999999873 22
Q ss_pred HHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH
Q 003146 345 MAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
+++ -.++.+.+.|.++++.+|..|+.++..+...+.. .+... .++.+..+|.+.++.++..|+.++..+ ..++
T Consensus 111 ~~~-~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-- 183 (526)
T PF01602_consen 111 MAE-PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-- 183 (526)
T ss_dssp HHH-HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH--
T ss_pred hhh-HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc--
Confidence 333 3578889999999999999999999888654211 11222 589999999999999999999999999 2111
Q ss_pred HHHHHcCChHHHHHHhhcc-CCcchhhHHHHHHHHHHHhcChhhhcc-cchHHHHHHhhccCChHHHHHHHHHHHHhhcC
Q 003146 425 QRLVISGIVSPLLQLLFSV-TSVLMTLREPASAILARIAQSESILVN-KDVAQQMLSLLNLCSPTIQYHLLHALNSIAAH 502 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~-~~~~~~l~~~a~~~L~~l~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 502 (844)
.... ..++.++..|..- ....+..+...+.+|..++........ ...++.+..++.+.++.+...|++++..+...
T Consensus 184 ~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 184 DSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp HHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred chhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 1100 3445555544421 111245677888888877765432221 46788899999999999999999999998765
Q ss_pred CChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHH
Q 003146 503 SSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGI 582 (844)
Q Consensus 503 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~ 582 (844)
. . .-..+++.|..++.++++++|..++..|..++...+..+. .....+..+..+++..++..+..+
T Consensus 262 ~---~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~------~~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 262 P---E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF------NQSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp H---H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG------THHHHHHHHHCSSSHHHHHHHHHH
T ss_pred h---H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh------hhhhhhheecCCCChhHHHHHHHH
Confidence 2 2 2234789999999999999999999999999876633322 122233455556788999999999
Q ss_pred HhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCC--CCHHHHHHHHHcCCHHHHHHHh
Q 003146 583 LSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDP--SDKKLQQYSVQHGVIRLLVKLL 660 (844)
Q Consensus 583 L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~--~~~~~~~~i~~~g~i~~Lv~lL 660 (844)
|.+++. ...... +++.|...+.+... ..++..++..+..++.. .+.+ -.++.+++++
T Consensus 328 L~~l~~--~~n~~~-----Il~eL~~~l~~~~d------~~~~~~~i~~I~~la~~~~~~~~--------~~v~~l~~ll 386 (526)
T PF01602_consen 328 LYKLAN--ESNVKE-----ILDELLKYLSELSD------PDFRRELIKAIGDLAEKFPPDAE--------WYVDTLLKLL 386 (526)
T ss_dssp HHHH----HHHHHH-----HHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHGSSHH--------HHHHHHHHHH
T ss_pred Hhhccc--ccchhh-----HHHHHHHHHHhccc------hhhhhhHHHHHHHHHhccCchHH--------HHHHHHHHhh
Confidence 999976 222222 46677788743311 13677788877776642 2222 2467899999
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcC-CChhh
Q 003146 661 SSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEG-KEREA 739 (844)
Q Consensus 661 ~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~-~~~~v 739 (844)
..++..+...+...+.++..+.+..+ ..++..|++.+.+ .++++
T Consensus 387 ~~~~~~~~~~~~~~i~~ll~~~~~~~-----------------------------------~~~l~~L~~~l~~~~~~~~ 431 (526)
T PF01602_consen 387 EISGDYVSNEIINVIRDLLSNNPELR-----------------------------------EKILKKLIELLEDISSPEA 431 (526)
T ss_dssp HCTGGGCHCHHHHHHHHHHHHSTTTH-----------------------------------HHHHHHHHHHHTSSSSHHH
T ss_pred hhccccccchHHHHHHHHhhcChhhh-----------------------------------HHHHHHHHHHHHHhhHHHH
Confidence 98888888888888998887655532 2357888888875 67788
Q ss_pred HHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhhh--
Q 003146 740 DETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQ-- 817 (844)
Q Consensus 740 ~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~-- 817 (844)
+..+++.++..+........+.. -+..++......++.+|...+.++.+++...... ...+.....+..+..
T Consensus 432 ~~~~~wilGEy~~~~~~~~~~~~-----~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~-~~~~~i~~~~~~~~~~~ 505 (526)
T PF01602_consen 432 LAAAIWILGEYGELIENTESAPD-----ILRSLIENFIEESPEVKLQILTALAKLFKRNPEN-EVQNEILQFLLSLATED 505 (526)
T ss_dssp HHHHHHHHHHHCHHHTTTTHHHH-----HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-THHHHHHHHHHCHHHHS
T ss_pred HHHHHhhhcccCCcccccccHHH-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-hhHHHHHHHHHHHhccC
Confidence 99999999987754311001111 1334445555567889999999999998543211 011112245556666
Q ss_pred cCCCCchHHHHHHHHHHh
Q 003146 818 NGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 818 ~~~~~~~~~aa~~L~~l~ 835 (844)
+.|+++|..|-.+++-|.
T Consensus 506 s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 506 SSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp -SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 779999999999887664
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.8e-09 Score=123.07 Aligned_cols=535 Identities=18% Similarity=0.154 Sum_probs=323.2
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCC------ChhH
Q 003146 229 VLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDL------PAVW 300 (844)
Q Consensus 229 ~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~------~~~~ 300 (844)
.|++-|-+++.++|..|-.+|.++.... ...+.|...+.. +++.|..|+..++.+... .+.+
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~ 77 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTE----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQ 77 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhccc----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 3555566777788999999998775322 267778888876 567888888888887542 2344
Q ss_pred HHHhhhhCcHHHHHHh-hcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 003146 301 RRIGRIQGCIVMLVSM-LSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT 379 (844)
Q Consensus 301 ~~i~~~~g~i~~Lv~l-L~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (844)
..|-. .|+.. .+...+.++..-+.++..++.+.-.- .=.+.++-|.+..+++++..|+.|..+|.++...
T Consensus 78 ~siks------~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 78 QSIKS------SLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred HHHHH------HHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 44433 34443 34556777777778887776532111 0134566677777888999999999999998764
Q ss_pred c--hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc-cHHHHHH-cCChHHHHHHhhccCCc-chhhHHHH
Q 003146 380 D--QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE-NIQRLVI-SGIVSPLLQLLFSVTSV-LMTLREPA 454 (844)
Q Consensus 380 ~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-~~~~i~~-~g~v~~Lv~lL~~~~~~-~~~l~~~a 454 (844)
- ..+..+. ...+.+.+-+.+++..+|..|++|+...+...+ ++...-. ...+|.++..+...-+. .......+
T Consensus 149 ~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 149 FGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 2 2221111 223444455556666699999999999886543 3333222 34577777776643221 12223456
Q ss_pred HHHHHHHhcCh-hhhcc--cchHHHHHHhhccC--ChHHHHHHHHHHHHhhcCCChhHHHHHHH--hCCcHHHHHHHhcc
Q 003146 455 SAILARIAQSE-SILVN--KDVAQQMLSLLNLC--SPTIQYHLLHALNSIAAHSSASNVRRKMK--ENGAIHLLLPFLME 527 (844)
Q Consensus 455 ~~~L~~l~~~~-~~l~~--~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~--~~g~i~~Lv~ll~~ 527 (844)
...|-.++... ..+.. ...++.-+.+.++. ++.+|..|+..|..+.... +..++... ....++.++..+.+
T Consensus 227 l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A--p~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 227 LEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA--PAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh--HHHhhhchhhhccHHHHHHHhcCC
Confidence 66666666654 22221 12344444555443 5789999999999988763 22222222 22245555555442
Q ss_pred CCH----------------HHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH
Q 003146 528 TNA----------------NIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNK 591 (844)
Q Consensus 528 ~~~----------------~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~ 591 (844)
... .-...|..+|..++.+-+... +-+-.++.+-.+|. +.+...+.++..+|+.++.+..
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQ-STEWKERHAALLALSVIAEGCS 380 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcccH
Confidence 211 134567777777766554211 11113333444444 6888899999999999988766
Q ss_pred HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHH
Q 003146 592 KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE-SVVAKSS 670 (844)
Q Consensus 592 ~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~ 670 (844)
+...... ..+++.+++.++++++ .++..|+.+++.++..-.|+.++.. .+.++|.|+..+.+. ++.|+..
T Consensus 381 ~~m~~~l-~~Il~~Vl~~l~Dphp-------rVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ah 451 (1075)
T KOG2171|consen 381 DVMIGNL-PKILPIVLNGLNDPHP-------RVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAH 451 (1075)
T ss_pred HHHHHHH-HHHHHHHHhhcCCCCH-------HHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHH
Confidence 5444322 4577788888888775 4677999999999988777777544 446788999999776 7899999
Q ss_pred HHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHH-hhcCCChhhHHHHHHHHHh
Q 003146 671 ASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQ-VLEGKEREADETVLGALAS 749 (844)
Q Consensus 671 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~-lL~~~~~~v~~~A~~AL~~ 749 (844)
|+.|+-|++.....-. ..=.=.+.+.+++. ++.++.+.|++.++.||+.
T Consensus 452 Aa~al~nf~E~~~~~~------------------------------l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 452 AAAALVNFSEECDKSI------------------------------LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIAS 501 (1075)
T ss_pred HHHHHHHHHHhCcHHH------------------------------HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 9999999997544311 00001223343333 4467889999999999999
Q ss_pred hhcccc--chhhhHHHHhcCChHHHHHHhhcCC-HHHHHHHHHHHHHHHhhh--hhhHhhccccchhHHhhh-------h
Q 003146 750 LLQDET--WESGSNYLAKLSGTQAIIKVLESGN-AKAQEKALWILERIFRIE--EHRVKYGESAQVVLIDLA-------Q 817 (844)
Q Consensus 750 L~~~~~--~~~~~~~i~~~g~i~~lv~ll~~~~-~~~~~~A~~~L~~i~~~~--~~~~~~~~~a~~~Lv~ll-------~ 817 (844)
.++... +.++-..+ ++.|..+|+..+ .+.|.-....++.+--.. --++++.+.+ ..|++++ +
T Consensus 502 vA~AA~~~F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a-~eliqll~~~~~~~~ 575 (1075)
T KOG2171|consen 502 VADAAQEKFIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA-EELIQLLLELQGSDQ 575 (1075)
T ss_pred HHHHHhhhhHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH-HHHHHHHHhhcccch
Confidence 997542 22333333 666777885544 445544444444442221 1134444433 2333333 2
Q ss_pred cCCCCchHHHHHHHHHHh
Q 003146 818 NGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 818 ~~~~~~~~~aa~~L~~l~ 835 (844)
+.|...+++-...-+.|.
T Consensus 576 ~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 576 DDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 334455555555555543
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.37 E-value=3.7e-11 Score=122.90 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=166.0
Q ss_pred HHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH
Q 003146 346 AEAGYFKPLVQYLKEG-SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 346 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
.+++-++.|+.+|... ++..+..+..++++.+..+.++..|.+.|+++.+..+|.++++.+|+.|+.+|.|++.+.+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 5677899999999965 678899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 425 QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
..+-. .++.+.+.+.+... ...++..++.+|.||+... ..+ .+.++.++.++..|+..+|.+++++|.+|+.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~l-ns~~Q~agLrlL~nLtv~~~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPL-NSEVQLAGLRLLTNLTVTNDYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCC-CCHHHHHHHHHHHccCCCcchhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 87643 57777777666543 2457789999999998765 233 2478999999999999999999999999999
Q ss_pred CCChhHHHHHHHhCCcHHHHHHHhccC-CHHHHHHHHHHHHHhhhhhh
Q 003146 502 HSSASNVRRKMKENGAIHLLLPFLMET-NANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 502 ~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~A~~~L~~ls~~~~ 548 (844)
+ +.....+...++...++.++... +.++...+..+..|+..+..
T Consensus 164 n---p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 164 N---PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred C---HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 8 56666677778999999999986 45788899999999976654
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.36 E-value=8.7e-10 Score=120.87 Aligned_cols=478 Identities=15% Similarity=0.115 Sum_probs=300.3
Q ss_pred hCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC---CHHHHHHHHHHHHHc-cCCChhHHHHhhhhCc
Q 003146 234 LGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR---DVEEQREAVGLLLDL-SDLPAVWRRIGRIQGC 309 (844)
Q Consensus 234 L~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~---~~~~~~~A~~~L~~L-s~~~~~~~~i~~~~g~ 309 (844)
|-+.+++....+..-.++++.++..++..+.+.|+++.+..+++. .++.+...+..+-.+ ++.......+.. .+.
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~-~~~ 96 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR-IIE 96 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH-Hhh
Confidence 345557777889999999999999999999999999999999987 234554444444444 345666777776 899
Q ss_pred HHHHHHhhcCCC-hHHHHHHHHHHHHhccCCcc---HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhh
Q 003146 310 IVMLVSMLSGND-PVASHDAGKLLNALSSNTQN---ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRAS 385 (844)
Q Consensus 310 i~~Lv~lL~s~d-~~~~~~A~~~L~nLs~~~~~---~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (844)
++.|..+|++.| ....+...+.+.++-...+. .........++.+-.++.-........-+....+++...+.+..
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~I 176 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLI 176 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhhe
Confidence 999999999888 77788888999988654432 22222333444444444323333333444555666777777887
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHH---HhhcCcc-cH----HHHHHcCChHH--HHHHhhccCCcchhhHHHHH
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQ---NLSLLAE-NI----QRLVISGIVSP--LLQLLFSVTSVLMTLREPAS 455 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~---nLs~~~~-~~----~~i~~~g~v~~--Lv~lL~~~~~~~~~l~~~a~ 455 (844)
....|+.+.+.-++..-+...|.+|...+. ++..+++ .. ....+.|+.+. +..+++++.. ..+..++
T Consensus 177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~---s~~l~sl 253 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF---SERLRSL 253 (678)
T ss_pred eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc---cHHHHHH
Confidence 888888877777776667788899988888 6665543 32 22335666663 4555555543 2335566
Q ss_pred HHHHHHhcCh---------hhhcccc--hHH--HHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHH
Q 003146 456 AILARIAQSE---------SILVNKD--VAQ--QMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLL 522 (844)
Q Consensus 456 ~~L~~l~~~~---------~~l~~~~--~i~--~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv 522 (844)
..|.++.... .+..+.| .+. ..+.++..+....-.+++...+-++... ...+....+....+.++
T Consensus 254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~--sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFA--SKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHH--HhhhhHHhhhhhhhhHH
Confidence 6666554432 1222222 111 1222333333233334444444444321 34444455566666666
Q ss_pred HHhcc------CCHHHHHHHHHHHHH---hhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHH
Q 003146 523 PFLME------TNANIRAAALNLVCT---LSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKA 593 (844)
Q Consensus 523 ~ll~~------~~~~v~~~A~~~L~~---ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 593 (844)
+++.. +.++.+.-++.=... ......-.....+.+.........+....|.....+|+-.+.+++..-..+
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 333333322221111 111111111112222222223333333456677777777777776554555
Q ss_pred HHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 003146 594 TELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASI 673 (844)
Q Consensus 594 ~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~ 673 (844)
+.-+.+.++..++++++.+|.. -+...+.++++|+...- ...+..+.+.|+|..+.+++.+.++.+|+.+.|
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~-------~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~ 483 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEI-------MIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLW 483 (678)
T ss_pred HcCCccchhHHHHHHHhhCcch-------hHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHH
Confidence 5556778899999999987764 25668999999998752 233677999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcc
Q 003146 674 SLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 674 aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
+|.++..+.....+ +.....=-...++.+.++++.+|++.+..-|-||..+
T Consensus 484 ~Lr~l~f~~de~~k-----------------------------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 484 VLRHLMFNCDEEEK-----------------------------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhcchHHHH-----------------------------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999988766331 2222222336777888999999999999999999987
Q ss_pred c
Q 003146 754 E 754 (844)
Q Consensus 754 ~ 754 (844)
.
T Consensus 535 ~ 535 (678)
T KOG1293|consen 535 S 535 (678)
T ss_pred c
Confidence 3
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.1e-09 Score=117.18 Aligned_cols=522 Identities=16% Similarity=0.135 Sum_probs=302.2
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCC----cHHHHHHHhcC-CHHHHHHHHHHHHHccCC--Ch
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVG----SLSALVKSLTR-DVEEQREAVGLLLDLSDL--PA 298 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g----~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~--~~ 298 (844)
..|.+.++|.+++.+...-|..+|..++.+..+.-+.-.... .++.++++.++ ++..|..|+..+-..--. ..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 689999999999999999999999999866544322211112 56778888888 456888888877654322 22
Q ss_pred hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 003146 299 VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL 378 (844)
Q Consensus 299 ~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~ 378 (844)
....| -..+..|..+-++++++++.+.+.++..|-.....|..=.-.+.++-.+..-++.+.++...|+.....++.
T Consensus 209 l~~~i---D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 209 LYVHI---DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHH---HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 22222 346777888888999999999999998886432222111124556666666677788888899998888888
Q ss_pred Cchhhhhhhh--cCchHHHHHHh----------hc-CC------------------------------------------
Q 003146 379 TDQSRASLGE--DGAIEPLVRMF----------RV-GK------------------------------------------ 403 (844)
Q Consensus 379 ~~~~~~~i~~--~g~i~~Lv~lL----------~~-~~------------------------------------------ 403 (844)
.+-.+..+.. ...||.|+.-+ ++ .+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 7766666654 45666665422 20 00
Q ss_pred ---HHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc-CCcchhhHHHHHHHHHHHhcCh-hhhcc--cchHHH
Q 003146 404 ---LEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV-TSVLMTLREPASAILARIAQSE-SILVN--KDVAQQ 476 (844)
Q Consensus 404 ---~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~l~~~a~~~L~~l~~~~-~~l~~--~~~i~~ 476 (844)
-..|+..+.+|--|+. +.....+|.++.+|+.. .++...++|.+.-+|..++++. ..+.. ...++.
T Consensus 366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPF 438 (885)
T ss_pred cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHH
Confidence 0122333333333321 22334566666666543 1223567888888999998875 22221 246889
Q ss_pred HHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 477 MLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 477 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
++++|.+..|-+|.-.+|+|...+..--.....+.+. ..+..|+..+-+++.+|+++|+.++..+-+...++...++.
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~ 516 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE 516 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 9999999999999999999987655421111001111 13455566666899999999999999887766666555443
Q ss_pred hhhHHHHHHHhcC--CCCHHHHHHHHHHHhcCC---CCCHHHHHHHH-----------h-CCChHHHHHHhhcCC----C
Q 003146 557 DKYLNILVDITLS--STSENEKAAAVGILSNLP---VSNKKATELLK-----------K-TNLLPSLISAATSST----I 615 (844)
Q Consensus 557 ~~~l~~Lv~lL~~--~~~~~~~~~a~~~L~~L~---~~~~~~~~~l~-----------~-~~~v~~L~~ll~~~~----~ 615 (844)
. .+..|+..+.. ..+--+...|.|.|+.-. .+.+...+.+. + ..-+-+|++.+.+-. .
T Consensus 517 ~-IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 517 Y-ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGV 595 (885)
T ss_pred H-HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhc
Confidence 2 45555554442 223334455666555332 11111111110 0 001111112221100 0
Q ss_pred CCCCCchhHHHHHHHHH-------------------------------HhccCCCCHHHHHHHHHcCCHHHHHHHhccCC
Q 003146 616 TKTHSTPWLVESVAGIL-------------------------------IRFTDPSDKKLQQYSVQHGVIRLLVKLLSSES 664 (844)
Q Consensus 616 ~~~~~~~~l~e~a~~aL-------------------------------~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 664 (844)
+--.+..++-..+...+ ..++..-.......+...++...+.+.+.+..
T Consensus 596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence 00011112222222222 22221111223345566787888888889999
Q ss_pred HHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHH
Q 003146 665 VVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVL 744 (844)
Q Consensus 665 ~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~ 744 (844)
|+||+.|-..|+.++..... |-.-| -+.-++.|-.-|....-.+.-.|.
T Consensus 676 peVRQS~FALLGDltk~c~~----------------------~v~p~---------~~~fl~~lg~Nl~~~~isv~nNA~ 724 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFE----------------------HVIPN---------LADFLPILGANLNPENISVCNNAI 724 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHH----------------------hccch---------HHHHHHHHhhcCChhhchHHHHHH
Confidence 99999999999999864221 10000 012234444445555667899999
Q ss_pred HHHHhhhcccc--chhhhHHHHhcCChHHHHHHhh--cCCHHHHHHHHHHHHHHHh
Q 003146 745 GALASLLQDET--WESGSNYLAKLSGTQAIIKVLE--SGNAKAQEKALWILERIFR 796 (844)
Q Consensus 745 ~AL~~L~~~~~--~~~~~~~i~~~g~i~~lv~ll~--~~~~~~~~~A~~~L~~i~~ 796 (844)
+|++.++..-- .+..+.. .+..|+.++. ..+..+-++.+..++|+-.
T Consensus 725 WAiGeia~k~g~~~~~~v~~-----vl~~L~~iin~~~~~~tllENtAITIGrLg~ 775 (885)
T KOG2023|consen 725 WAIGEIALKMGLKMKQYVSP-----VLEDLITIINRQNTPKTLLENTAITIGRLGY 775 (885)
T ss_pred HHHHHHHHHhchhhhhHHHH-----HHHHHHHHhcccCchHHHHHhhhhhhhhhhc
Confidence 99999985421 1212222 2555666653 3445677888878887754
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.21 E-value=1.8e-06 Score=101.57 Aligned_cols=527 Identities=15% Similarity=0.123 Sum_probs=312.2
Q ss_pred HHHHHHHhcCCcChHHHh--hCCCHHHHHHHhCCCCchHHHHHHH-HHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CH
Q 003146 205 LELRELISAKTVDSEWIN--EAEIIAVLLNRLGSSKPYNRLIMIQ-ILRNLASENADYKEKMANVGSLSALVKSLTR-DV 280 (844)
Q Consensus 205 ~~l~~L~~~~~~~~~~i~--~~~~~p~l~~lL~s~~~~~~~~a~~-~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~ 280 (844)
+.++.=.+.+..+.+.|. ..|=+.-+...|.+.+...+..+++ ++..++.+.+- ....+..++.+.+ +.
T Consensus 10 ~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~ 82 (746)
T PTZ00429 10 ERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDL 82 (746)
T ss_pred HHHHHHhhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCH
Confidence 445555556665556664 2234555777787776655555544 22333222110 1134556777766 56
Q ss_pred HHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhc
Q 003146 281 EEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLK 359 (844)
Q Consensus 281 ~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~ 359 (844)
+.++..--.+.++++. ++.. --+|..|.+=+.++||.++-.|+.+|.++-.. .+++ -.++++.+.|.
T Consensus 83 elKKLvYLYL~~ya~~~pela------lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e-~l~~~lkk~L~ 150 (746)
T PTZ00429 83 ELKKLVYLYVLSTARLQPEKA------LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLE-YTLEPLRRAVA 150 (746)
T ss_pred HHHHHHHHHHHHHcccChHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHH-HHHHHHHHHhc
Confidence 7777777777777664 3321 12456777778889999999998888775431 2222 34566778888
Q ss_pred cCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHH
Q 003146 360 EGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQL 439 (844)
Q Consensus 360 ~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~l 439 (844)
+.++.+|..|+-++.++-..+. ..+.+.|.++.|.++|.+.++.+...|+.+|..+.......-. ...+.+..|+..
T Consensus 151 D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~ 227 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYH 227 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHH
Confidence 8999999999999998755332 2334567889999999999999999999999999865332211 223445556666
Q ss_pred hhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHH
Q 003146 440 LFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIH 519 (844)
Q Consensus 440 L~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~ 519 (844)
|...+ ++.+-..+.+|....-... -.....+..+...|.+.++.+...|++++.++....+.......+.. ...
T Consensus 228 L~e~~---EW~Qi~IL~lL~~y~P~~~-~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~ 301 (746)
T PTZ00429 228 LPECN---EWGQLYILELLAAQRPSDK-ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVR--VNT 301 (746)
T ss_pred hhcCC---hHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHH
Confidence 65443 3445556665544321111 01134677777888889999999999999999765321222222211 235
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 003146 520 LLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKK 599 (844)
Q Consensus 520 ~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~ 599 (844)
+|+.+ .++++++|..++..+..+....+.-+..+ +..+. ...++...++.....+|..|+.. .....
T Consensus 302 pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~-----~~~Ff--~~~~Dp~yIK~~KLeIL~~Lane-~Nv~~---- 368 (746)
T PTZ00429 302 ALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTN-----LDSFY--VRYSDPPFVKLEKLRLLLKLVTP-SVAPE---- 368 (746)
T ss_pred HHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHH-----HHhhh--cccCCcHHHHHHHHHHHHHHcCc-ccHHH----
Confidence 66766 45678999999988877766554333221 11111 11234446788888888888762 22222
Q ss_pred CCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 003146 600 TNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLS 679 (844)
Q Consensus 600 ~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls 679 (844)
++.-|..+..+.+ .++...++.++++++..-.. .....+..|+++++.+.. ....+...+.++-
T Consensus 369 --IL~EL~eYa~d~D-------~ef~r~aIrAIg~lA~k~~~------~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Il 432 (746)
T PTZ00429 369 --ILKELAEYASGVD-------MVFVVEVVRAIASLAIKVDS------VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIV 432 (746)
T ss_pred --HHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHH
Confidence 2234445554332 25777889999888753222 123467788888876544 3446778888886
Q ss_pred hcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhh---cCCChhhHHHHHHHHHhhhccccc
Q 003146 680 QNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVL---EGKEREADETVLGALASLLQDETW 756 (844)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL---~~~~~~v~~~A~~AL~~L~~~~~~ 756 (844)
...++. ..+..|+..+ .-.+++++.+.+|.|+.....-
T Consensus 433 rkyP~~-------------------------------------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-- 473 (746)
T PTZ00429 433 RKYPEL-------------------------------------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-- 473 (746)
T ss_pred HHCccH-------------------------------------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH--
Confidence 543320 0234444433 1246677777788888765321
Q ss_pred hhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhh-hcCCCCchHHHHHHHHHHh
Q 003146 757 ESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLA-QNGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 757 ~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll-~~~~~~~~~~aa~~L~~l~ 835 (844)
+.+.. -++.++.-+...++.+|-..+.+..|+|-..... ....-+..|-.++ .+.|+++|..|.-+.+-|+
T Consensus 474 ~~a~~------~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~--~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 474 ENGKD------IIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG--MEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred hhHHH------HHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 11111 1323333333467788888888888887543210 0000011222222 3567788888887666553
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.19 E-value=3.1e-07 Score=107.87 Aligned_cols=435 Identities=16% Similarity=0.169 Sum_probs=282.4
Q ss_pred CCcHHHHHHHhcC-CHHHHHHHHH-HHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHH
Q 003146 266 VGSLSALVKSLTR-DVEEQREAVG-LLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNAL 343 (844)
Q Consensus 266 ~g~i~~Lv~~L~~-~~~~~~~A~~-~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~ 343 (844)
.|-+..|-+.|.+ +...++.|++ .+..++...+. ....+-.+.++.++|...+....-.+.+.+.......
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence 5567777788876 4556666765 44444444332 3345567778889999999988888888775433222
Q ss_pred HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCccc
Q 003146 344 HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAEN 423 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~ 423 (844)
.+ ++..+.+-+.+.++.+|..|.++|+++-..+-. .-.++++.+.+.+.++-+|+.|+.|+.++-....
T Consensus 104 lL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~------e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 104 LL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVL------EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 22 466778888888999999999999886543211 1245677888899999999999999999875432
Q ss_pred HHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 424 IQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 424 ~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
..+.+.|.++.|.++|.+.+. .+...|+.+|..+.... .+-...+.+..|+..+...++..|...+.+|.....
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp---~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P 248 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNP---VVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP 248 (746)
T ss_pred -ccccccchHHHHHHHhcCCCc---cHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Confidence 233456788899998876553 47789999999887543 122233456677777777788888888888855332
Q ss_pred CCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHH
Q 003146 502 HSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVG 581 (844)
Q Consensus 502 ~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~ 581 (844)
.. ..+. ...+..+...|++.++.|.-.|++++.++....+...........-.+|+.++ +++++++..+..
T Consensus 249 ~~-~~e~------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~--ss~~eiqyvaLr 319 (746)
T PTZ00429 249 SD-KESA------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS--RRDAETQYIVCK 319 (746)
T ss_pred CC-cHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh--CCCccHHHHHHH
Confidence 21 1121 23678888889999999999999999888754332322222222235566664 356788887776
Q ss_pred HHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhc
Q 003146 582 ILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLS 661 (844)
Q Consensus 582 ~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~ 661 (844)
.+.-+....+.. .... +..+.-...++. .++...+..|..++...|.+ . ++.-|.+...
T Consensus 320 ~I~~i~~~~P~l----f~~~-~~~Ff~~~~Dp~--------yIK~~KLeIL~~Lane~Nv~---~-----IL~EL~eYa~ 378 (746)
T PTZ00429 320 NIHALLVIFPNL----LRTN-LDSFYVRYSDPP--------FVKLEKLRLLLKLVTPSVAP---E-----ILKELAEYAS 378 (746)
T ss_pred HHHHHHHHCHHH----HHHH-HHhhhcccCCcH--------HHHHHHHHHHHHHcCcccHH---H-----HHHHHHHHhh
Confidence 665554433321 1111 222222222222 36778889999988765543 1 2233566666
Q ss_pred cCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHH
Q 003146 662 SESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADE 741 (844)
Q Consensus 662 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~ 741 (844)
+.+.+.++.+..++++++..-+.. ...++..|++++.++.+ +..
T Consensus 379 d~D~ef~r~aIrAIg~lA~k~~~~-----------------------------------a~~cV~~Ll~ll~~~~~-~v~ 422 (746)
T PTZ00429 379 GVDMVFVVEVVRAIASLAIKVDSV-----------------------------------APDCANLLLQIVDRRPE-LLP 422 (746)
T ss_pred cCCHHHHHHHHHHHHHHHHhChHH-----------------------------------HHHHHHHHHHHhcCCch-hHH
Confidence 778899999999999998643321 23467899999986554 344
Q ss_pred HHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh---hcCCHHHHHHHHHHHHHHHhh
Q 003146 742 TVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL---ESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 742 ~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll---~~~~~~~~~~A~~~L~~i~~~ 797 (844)
.++.++.++...-. +. . .+..++..+ .-.++..+...+|+|+.+...
T Consensus 423 e~i~vik~IlrkyP-~~---~-----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 423 QVVTAAKDIVRKYP-EL---L-----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred HHHHHHHHHHHHCc-cH---H-----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 57788888865431 11 0 133444332 225677888889999887543
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.11 E-value=1e-09 Score=100.29 Aligned_cols=116 Identities=27% Similarity=0.305 Sum_probs=106.1
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-CccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD- 380 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~- 380 (844)
+.+ .|+++.|+.++.++++.++..++++|.+++.+ ++.+..+.+.|+++.++++|.++++.++..++++|++++.+.
T Consensus 3 ~~~-~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQ-AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHH-cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 444 89999999999999999999999999999986 777888889999999999999999999999999999999876
Q ss_pred hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 003146 381 QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 381 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
..+..+.+.|.++.|++++.+++..+++.|+++|.||+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 566777789999999999999999999999999999873
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.08 E-value=2.1e-09 Score=98.25 Aligned_cols=117 Identities=26% Similarity=0.294 Sum_probs=104.5
Q ss_pred HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc-
Q 003146 344 HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA- 421 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~- 421 (844)
.+++.|+++.++++|.+++...+..++.+|++++.. ++.+..+.+.|++|.|+.++.+++++++..|+++|+||+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 466889999999999999999999999999999987 678888888999999999999999999999999999999886
Q ss_pred ccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 422 ENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 422 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
.....+.+.|+++.|++++...+ ..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~---~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN---EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC---HHHHHHHHHHHHHhhC
Confidence 46677788999999999998764 4588999999998863
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.99 E-value=2.8e-07 Score=100.60 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=220.8
Q ss_pred CHHHHHHHhC-CCCchHHHHHHHHHHHhHhcChhhHHHHhc-----CCcHHHHHHHhcCC-HHHHHHHHHHHHHccCCCh
Q 003146 226 IIAVLLNRLG-SSKPYNRLIMIQILRNLASENADYKEKMAN-----VGSLSALVKSLTRD-VEEQREAVGLLLDLSDLPA 298 (844)
Q Consensus 226 ~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~-----~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~~~~ 298 (844)
.+..++.+|+ .++.++....+..+..+...++.....+.+ ......++++|.++ .-+...|...|..+.....
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 5666777776 456777778888888887766554444443 34667788888774 4577888888888754322
Q ss_pred hH-HHHhhhhCcHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCC--HHHHHHHHHHHH
Q 003146 299 VW-RRIGRIQGCIVMLVSMLSGN-DPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGS--DMSKILMATALS 374 (844)
Q Consensus 299 ~~-~~i~~~~g~i~~Lv~lL~s~-d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~ 374 (844)
.. ..... .-....|...|++. +...+.-|+.+|..|...++.|..+.+.+++++|+.+|+... ...+..+.-+++
T Consensus 134 ~~~~~~~l-~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 134 AKMEGSDL-DYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred cccchhHH-HHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 11 10000 11334555666553 577788888999999999999999999999999999998743 467789999999
Q ss_pred HhhcCchhhhhhhhcCchHHHHHHhhcC-CHHHHHHHHHHHHHhhcCc-------ccHHHHHHcCChHHHHHHhhccCCc
Q 003146 375 RMELTDQSRASLGEDGAIEPLVRMFRVG-KLEAKLSALNALQNLSLLA-------ENIQRLVISGIVSPLLQLLFSVTSV 446 (844)
Q Consensus 375 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-------~~~~~i~~~g~v~~Lv~lL~~~~~~ 446 (844)
-|+.+++........+.|+.|+.+++.. ...+.+-++.+|.||...+ .....|++.|+.+ ++..|....-.
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYD 291 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCC
Confidence 9999987766777789999999999864 3467788999999999743 2345677777755 55666554322
Q ss_pred chhhHHHHHHHH-------HHHhcCh-------------------hh--------hccc--chHHHHHHhhc-cCChHHH
Q 003146 447 LMTLREPASAIL-------ARIAQSE-------------------SI--------LVNK--DVAQQMLSLLN-LCSPTIQ 489 (844)
Q Consensus 447 ~~~l~~~a~~~L-------~~l~~~~-------------------~~--------l~~~--~~i~~Lv~lL~-~~~~~~~ 489 (844)
++.+.+....+- ..+++-+ +. +.++ ..+..|+++|. +.+|.+.
T Consensus 292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l 371 (429)
T cd00256 292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL 371 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence 233433322221 2222111 00 1112 23778889985 4567777
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 490 YHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTL 543 (844)
Q Consensus 490 ~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~l 543 (844)
.-|+.=+..++++. +.-+..+.+-|+=..+.+++.+++++||..|..++..+
T Consensus 372 aVAc~Dige~vr~~--P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 372 AVACHDIGEYVRHY--PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred ehhhhhHHHHHHHC--ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 78888888888885 67788888999999999999999999999999998765
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.5e-07 Score=103.20 Aligned_cols=537 Identities=15% Similarity=0.135 Sum_probs=290.2
Q ss_pred cHHHHHHHhcC-CHHHHHHHHHHHHHccCCCh-hHHH-Hhh--hhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccH
Q 003146 268 SLSALVKSLTR-DVEEQREAVGLLLDLSDLPA-VWRR-IGR--IQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNA 342 (844)
Q Consensus 268 ~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~-~~~~-i~~--~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~ 342 (844)
.++.|..+|.+ +....+-|..+|..++.+.. .-+. ... -.-.||.++.+.++++|.++.+|+.++...-... +.
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQ 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cH
Confidence 67888888887 44677889999998887642 1111 110 0235899999999999999999998886654322 22
Q ss_pred HHHHH-cCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc
Q 003146 343 LHMAE-AGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA 421 (844)
Q Consensus 343 ~~i~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 421 (844)
..+.. ...++.+..+-.+.++++|.+.+.+|..|-...-.|..=.=.+.++-++..-++.+..+-..|+.....++..+
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 22222 23455556666677899999999998887654332222122467777788878888899999999999999888
Q ss_pred ccHHHHHH--cCChHHHHHHhhccCCc-----------------------------------------------------
Q 003146 422 ENIQRLVI--SGIVSPLLQLLFSVTSV----------------------------------------------------- 446 (844)
Q Consensus 422 ~~~~~i~~--~g~v~~Lv~lL~~~~~~----------------------------------------------------- 446 (844)
-.+..+.. ...||.|+.-|...+.+
T Consensus 288 i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~ 367 (885)
T KOG2023|consen 288 ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS 367 (885)
T ss_pred CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccc
Confidence 44443332 34666666544321110
Q ss_pred chhhHHHHHHHHHHHhcChhhhcccchHHHHH----HhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHh--CCcHHH
Q 003146 447 LMTLREPASAILARIAQSESILVNKDVAQQML----SLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKE--NGAIHL 520 (844)
Q Consensus 447 ~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv----~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~--~g~i~~ 520 (844)
...+|..++++|-.|++- .....++.++ +.|.+..+.+||.++-+|..++... -+-+.. ...+|.
T Consensus 368 dWNLRkCSAAaLDVLanv----f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-----M~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANV----FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC-----MQGFVPHLPELIPF 438 (885)
T ss_pred cccHhhccHHHHHHHHHh----hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-----hhhcccchHHHHHH
Confidence 022344334433333321 2233344444 4455567889999999999987542 111111 126888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Q 003146 521 LLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKT 600 (844)
Q Consensus 521 Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~ 600 (844)
|+++|.+..+-||...+|.|...+.+.-..-....-...+..|++.+- +++..+|.+||.+++-+-. +.. .
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll-D~NK~VQEAAcsAfAtleE---~A~-----~ 509 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL-DSNKKVQEAACSAFATLEE---EAG-----E 509 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH---hcc-----c
Confidence 999999999999999999998777664422121111225555555554 3677999999999888732 211 2
Q ss_pred CChHHHHHHhhcC-----CCCCCCCchhHHHHHHHHHHhcc--CCCCHHHHHHHHHcCCHHHHHH---HhccCCHHHHHH
Q 003146 601 NLLPSLISAATSS-----TITKTHSTPWLVESVAGILIRFT--DPSDKKLQQYSVQHGVIRLLVK---LLSSESVVAKSS 670 (844)
Q Consensus 601 ~~v~~L~~ll~~~-----~~~~~~~~~~l~e~a~~aL~~l~--~~~~~~~~~~i~~~g~i~~Lv~---lL~~~~~~vk~~ 670 (844)
..||.|-.+|..- .-..+. --+...|++.|..-. .-+++.+.+ -.+|+|++ +|++++.+.- -
T Consensus 510 eLVp~l~~IL~~l~~af~kYQ~KN--LlILYDAIgtlAdsvg~~Ln~~~Yiq-----iLmPPLi~KW~~lsd~DKdLf-P 581 (885)
T KOG2023|consen 510 ELVPYLEYILDQLVFAFGKYQKKN--LLILYDAIGTLADSVGHALNKPAYIQ-----ILMPPLIEKWELLSDSDKDLF-P 581 (885)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcc--eehHHHHHHHHHHHHHHhcCcHHHHH-----HhccHHHHHHHhcCcccchHH-H
Confidence 2334333333220 000000 013445666665443 112343221 23455553 3344433221 1
Q ss_pred HHHHHHHHhhcCcc----cccccccc---cee--c------C--CCCC------CcCccc--cccc--CcccchHh-hhc
Q 003146 671 ASISLAQLSQNSLS----LRKSKISK---WLC--V------P--PSAD------AFCEVH--DGYC--FVKSTFCL-VKA 722 (844)
Q Consensus 671 Aa~aL~~ls~~~~~----~~~~~~~~---~~~--~------~--~~~~------~~c~~h--~~~~--~~~~~~~l-~~~ 722 (844)
-..|+..++..-.. ...+.+.+ ..| . . ++.+ -.|.+. .|.- -......| ..+
T Consensus 582 LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~s 661 (885)
T KOG2023|consen 582 LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQS 661 (885)
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhc
Confidence 11222222211000 00000000 000 0 0 0000 011100 0000 00011122 245
Q ss_pred CCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh----hcCCHHHHHHHHHHHHHHHhh-
Q 003146 723 GAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL----ESGNAKAQEKALWILERIFRI- 797 (844)
Q Consensus 723 ~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll----~~~~~~~~~~A~~~L~~i~~~- 797 (844)
+....+.+++.+.-++||..|-.-|+-+...-. +. + .+-+..++.++ ...+..+--+|.|+++.|...
T Consensus 662 nl~~lll~C~~D~~peVRQS~FALLGDltk~c~-~~---v---~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~ 734 (885)
T KOG2023|consen 662 NLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF-EH---V---IPNLADFLPILGANLNPENISVCNNAIWAIGEIALKM 734 (885)
T ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-Hh---c---cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHh
Confidence 666777888899999999999888888775421 10 0 11233333333 234557788999999988532
Q ss_pred hhhhHhhccccchhHHhhhhcCC--CCchHHHHHHHHHHhhhh
Q 003146 798 EEHRVKYGESAQVVLIDLAQNGD--SRLKPAVAKLLAQLELLQ 838 (844)
Q Consensus 798 ~~~~~~~~~~a~~~Lv~ll~~~~--~~~~~~aa~~L~~l~~~~ 838 (844)
+...+.|-...-..|+..++... ..+-...|-.++.|++..
T Consensus 735 g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~ 777 (885)
T KOG2023|consen 735 GLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC 777 (885)
T ss_pred chhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence 22222222222246666655443 334556666667776653
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6e-07 Score=101.09 Aligned_cols=221 Identities=15% Similarity=0.171 Sum_probs=174.4
Q ss_pred hcCchHHHHHHhhcC-CHHHHHHHHHHHHHhhc-CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 388 EDGAIEPLVRMFRVG-KLEAKLSALNALQNLSL-LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 388 ~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
-...+|.|+.+|++. +.+....|++||.+|+. .|.....+++.++||.|+.-|..-. -+.+.|.++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie--yiDvAEQ~LqALE~iSR~H 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE--YIDVAEQSLQALEKISRRH 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh--hhHHHHHHHHHHHHHHhhc
Confidence 356789999999976 57889999999999996 5889999999999999998877554 2568899999999998864
Q ss_pred -hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 466 -SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 466 -~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
..+.+.|++...+..+..-+-.+|..|+.+-.|+|..-..++. ..+++ ++|.|..+|...+....+.++-++..+.
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVME--ALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 5667789999999999888889999999999999987643322 22333 7999999999999988888888887776
Q ss_pred hh---hhHHHHHHhchhhHHHHHHHhcCCC---CHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcC
Q 003146 545 KD---VYEELAEQLGDKYLNILVDITLSST---SENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSS 613 (844)
Q Consensus 545 ~~---~~~~i~~~l~~~~l~~Lv~lL~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~ 613 (844)
.. .++.+.+....+.+....++|.-.+ +........+.|.-++.+.+.....+...++...|..+|...
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 53 2344444445556666666666432 234456777888889888899999999999999999988653
No 43
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.78 E-value=1.2e-05 Score=89.36 Aligned_cols=452 Identities=14% Similarity=0.156 Sum_probs=247.8
Q ss_pred hcCCChHHHHHHHHHHHHhcc--CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC--chhhhhhhhcCch
Q 003146 317 LSGNDPVASHDAGKLLNALSS--NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT--DQSRASLGEDGAI 392 (844)
Q Consensus 317 L~s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i 392 (844)
|.++...++..++-+|..|+. .+-...++ ..++.+|.+-.+......-..-..+++.|... .++..... ..++
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~f--DsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyT-revm 638 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQF--DSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYT-REVM 638 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhH-HHHH
Confidence 345666677666666666653 22222222 12344444433332211212223344444432 23322222 2334
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCC-----cchhhHHHHHHHHHHHhcChh-
Q 003146 393 EPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTS-----VLMTLREPASAILARIAQSES- 466 (844)
Q Consensus 393 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~-----~~~~l~~~a~~~L~~l~~~~~- 466 (844)
--+++=..+++.+.|+-.++.+...|...+.-...+....+|.++...-.... .-..+.+.+..+-..+...+.
T Consensus 639 lil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v 718 (1172)
T KOG0213|consen 639 LILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIV 718 (1172)
T ss_pred HHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHH
Confidence 44555566788899999999999999887777777777888877765543210 011122333333333322220
Q ss_pred --h------------hcccchHHHHHHhhccCC--hHHHHHHH-HHHHHhhcCCCh--------hHHHHHHHh------C
Q 003146 467 --I------------LVNKDVAQQMLSLLNLCS--PTIQYHLL-HALNSIAAHSSA--------SNVRRKMKE------N 515 (844)
Q Consensus 467 --~------------l~~~~~i~~Lv~lL~~~~--~~~~~~a~-~~L~~L~~~~~~--------~~~~~~i~~------~ 515 (844)
+ -...+.+..++..+...+ ...-+.-. ++|..+..+... ..+...+.. .
T Consensus 719 ~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylp 798 (1172)
T KOG0213|consen 719 SRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLP 798 (1172)
T ss_pred HHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchH
Confidence 0 011234555565554432 22222222 222333222110 011111111 1
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH----HHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH
Q 003146 516 GAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE----ELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNK 591 (844)
Q Consensus 516 g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~----~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~ 591 (844)
..+..++..|++.++.+|..|+.++..++.-... ....+++ ..|-..|. ...+++.....+++..+....
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG----vvLyEylg-eeypEvLgsILgAikaI~nvi- 872 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG----VVLYEYLG-EEYPEVLGSILGAIKAIVNVI- 872 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh----HHHHHhcC-cccHHHHHHHHHHHHHHHHhc-
Confidence 2345566788899999999999999887654331 1222222 12334444 356677655555554442211
Q ss_pred HHHHHH-HhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCHHHHHHHhccCCH
Q 003146 592 KATELL-KKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSD-----KKLQQYSVQHGVIRLLVKLLSSESV 665 (844)
Q Consensus 592 ~~~~~l-~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~-----~~~~~~i~~~g~i~~Lv~lL~~~~~ 665 (844)
...+.. --.+.+|.|..+|++.+. .++++.+..+..++.... .+|.+... -|+++|.+.+-
T Consensus 873 gm~km~pPi~dllPrltPILknrhe-------KVqen~IdLvg~IadrgpE~v~aREWMRIcf------eLlelLkahkK 939 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNRHE-------KVQENCIDLVGTIADRGPEYVSAREWMRICF------ELLELLKAHKK 939 (1172)
T ss_pred cccccCCChhhhcccchHhhhhhHH-------HHHHHHHHHHHHHHhcCcccCCHHHHHHHHH------HHHHHHHHHHH
Confidence 000000 014788999999987653 578899999988886532 23433322 37888888899
Q ss_pred HHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHH
Q 003146 666 VAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLG 745 (844)
Q Consensus 666 ~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~ 745 (844)
.+|++|...++.++.-- --+.++..|+.-|...+..-|....-
T Consensus 940 ~iRRaa~nTfG~IakaI-------------------------------------GPqdVLatLlnnLkvqeRq~RvcTtv 982 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAI-------------------------------------GPQDVLATLLNNLKVQERQNRVCTTV 982 (1172)
T ss_pred HHHHHHHhhhhHHHHhc-------------------------------------CHHHHHHHHHhcchHHHHHhchhhhh
Confidence 99999999999888421 11234455555555544444444444
Q ss_pred HHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhh-hhhhHhhccccchhHHhhhhcCCCCch
Q 003146 746 ALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRI-EEHRVKYGESAQVVLIDLAQNGDSRLK 824 (844)
Q Consensus 746 AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~-~~~~~~~~~~a~~~Lv~ll~~~~~~~~ 824 (844)
|+.-.+.--.+ ...+|.|..=.+.++.++|--.+.++.-+|.. .++...|--...+-|.+.+-+.|..-|
T Consensus 983 aIaIVaE~c~p---------FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhR 1053 (1172)
T KOG0213|consen 983 AIAIVAETCGP---------FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHR 1053 (1172)
T ss_pred hhhhhhhhcCc---------hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHH
Confidence 44433322101 12466666666778889998888888888865 344444433333566689999999999
Q ss_pred HHHHHHHHHHhh
Q 003146 825 PAVAKLLAQLEL 836 (844)
Q Consensus 825 ~~aa~~L~~l~~ 836 (844)
+.|..+.+||..
T Consensus 1054 qta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1054 QTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 44
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3e-06 Score=95.60 Aligned_cols=380 Identities=15% Similarity=0.145 Sum_probs=253.7
Q ss_pred cHHHHHHHHcCC-ChHHHHHHHHHHHHHHh-cCCcChHHHhhCCCHHHHHHHhCCC-CchHHHHHHHHHHHhHhcChhhH
Q 003146 184 GIDDVMLQLKHG-DDKNLKFALLELRELIS-AKTVDSEWINEAEIIAVLLNRLGSS-KPYNRLIMIQILRNLASENADYK 260 (844)
Q Consensus 184 ~i~~lv~~L~~~-~~~~~~~a~~~l~~L~~-~~~~~~~~i~~~~~~p~l~~lL~s~-~~~~~~~a~~~L~~L~~~~~~~~ 260 (844)
.+.+++.-|+.. ++..+.+++.++.+... .++.--..|.-.-.+|.++.+|+.+ +.++...|.++|.+|..-.++..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 477888888887 55566677655433221 2211111333334799999999864 78999999999999987787778
Q ss_pred HHHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc-
Q 003146 261 EKMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS- 337 (844)
Q Consensus 261 ~~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~- 337 (844)
..+++.++||.|+..|.. ..+..++++.+|-.+++.. ...|.+ +|++-..+.+|.=-...+|+.|+.+..|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999876 3467777888887777642 345676 9999999888866667899999999999985
Q ss_pred -CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC----chhhhhhhhcCchHHHHHHhhcCCH----HHHH
Q 003146 338 -NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT----DQSRASLGEDGAIEPLVRMFRVGKL----EAKL 408 (844)
Q Consensus 338 -~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~----~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~ 408 (844)
.++.-.-+++ ++|.|..+|+..+...-+.++-++.+++.. .+--..+...|.|....+||.-..+ ....
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 3444444544 789999999988877777777677766543 3445566778888888888764322 2233
Q ss_pred HHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCc------------chhhHHHHH--------------------
Q 003146 409 SALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSV------------LMTLREPAS-------------------- 455 (844)
Q Consensus 409 ~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~------------~~~l~~~a~-------------------- 455 (844)
..++.|.-+|++ +-....+.+.++...|..+|...... +..+.+...
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 345566666665 55555666666666666666532110 000111000
Q ss_pred -------------------------------HHHHHHhcC--------------h--hhhccc---------chHHHHHH
Q 003146 456 -------------------------------AILARIAQS--------------E--SILVNK---------DVAQQMLS 479 (844)
Q Consensus 456 -------------------------------~~L~~l~~~--------------~--~~l~~~---------~~i~~Lv~ 479 (844)
.++..+-.+ + ..+.+. ..++.|++
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLve 562 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVE 562 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 011100000 0 011111 23667777
Q ss_pred hhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchh
Q 003146 480 LLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDK 558 (844)
Q Consensus 480 lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~ 558 (844)
+..+ .++.+|..|+.+|..+......+.++..+.....-..+--.|...+..+..-|+.....|.+..++.+...+...
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~RE 642 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRRE 642 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhh
Confidence 7765 489999999999999877776688888888888888888999999998888888888877777676655554433
Q ss_pred hHHHHHHHhc
Q 003146 559 YLNILVDITL 568 (844)
Q Consensus 559 ~l~~Lv~lL~ 568 (844)
++-..|+-|.
T Consensus 643 GV~~~v~~L~ 652 (1051)
T KOG0168|consen 643 GVFHAVKQLS 652 (1051)
T ss_pred hHHHHHHHHh
Confidence 3333444333
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.74 E-value=4.9e-06 Score=91.04 Aligned_cols=320 Identities=12% Similarity=0.088 Sum_probs=214.4
Q ss_pred CcHHHHHHhhc-CCChHHHHHHHHHHHHhccCCccHHH-HHH-----cCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc
Q 003146 308 GCIVMLVSMLS-GNDPVASHDAGKLLNALSSNTQNALH-MAE-----AGYFKPLVQYLKEGSDMSKILMATALSRMELTD 380 (844)
Q Consensus 308 g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~~~~~~~~-i~~-----~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 380 (844)
..+..++++|+ ...+++.+.....+..|...++.+.. +.+ .....+++.+|..++......++..|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 45667777775 35677777777777777665554433 333 346788889998888888888999998886532
Q ss_pred -hhhhhhhhcCchHHHHHHhhcC-CHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHH
Q 003146 381 -QSRASLGEDGAIEPLVRMFRVG-KLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAIL 458 (844)
Q Consensus 381 -~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L 458 (844)
.........-...-|...|+++ +...+..|+.+|..|...++.|..+.+.+++++|+++|+.... +.+++-+++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~-~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATL-GFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 2111000001222344555544 3567888899999999999999999999999999999986542 356788999999
Q ss_pred HHHhcCh---hhhcccchHHHHHHhhccC-ChHHHHHHHHHHHHhhcCCC----hhHHHHHHHhCCcHHHHHHHhcc--C
Q 003146 459 ARIAQSE---SILVNKDVAQQMLSLLNLC-SPTIQYHLLHALNSIAAHSS----ASNVRRKMKENGAIHLLLPFLME--T 528 (844)
Q Consensus 459 ~~l~~~~---~~l~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~----~~~~~~~i~~~g~i~~Lv~ll~~--~ 528 (844)
|-|+-.+ ..+...+.++.|+++++.. .+++..-++.+|.|+...+. ...+...+.+.|..+.+-.+... +
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 9998886 3445568899999999874 56788889999999987542 13344556666665544444332 3
Q ss_pred CHHHHHHHHHHHHHh-------hh--------------hhh----HHHH----HHhc---hhhHHHHHHHhcCCCCHHHH
Q 003146 529 NANIRAAALNLVCTL-------SK--------------DVY----EELA----EQLG---DKYLNILVDITLSSTSENEK 576 (844)
Q Consensus 529 ~~~v~~~A~~~L~~l-------s~--------------~~~----~~i~----~~l~---~~~l~~Lv~lL~~~~~~~~~ 576 (844)
++++...-..+-..| +. ++| +.+. ..+. ...+..|+++|..++|+.+.
T Consensus 292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l 371 (429)
T cd00256 292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL 371 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence 455443322222211 11 111 0111 0111 22678899999777788888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhc
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l 635 (844)
+.||.=++.+....|.-+..+.+.|+=..+..++.+++. +++.+|+.++..+
T Consensus 372 aVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~-------~Vr~eAL~avQkl 423 (429)
T cd00256 372 AVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDP-------NVRYEALLAVQKL 423 (429)
T ss_pred ehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCH-------HHHHHHHHHHHHH
Confidence 788888888887777778888889998999999987764 5677777776543
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.4e-05 Score=87.77 Aligned_cols=395 Identities=13% Similarity=0.152 Sum_probs=220.1
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccC--CcchhhHHHHHHHHHHHhcCh--hhhc--ccc
Q 003146 399 FRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVT--SVLMTLREPASAILARIAQSE--SILV--NKD 472 (844)
Q Consensus 399 L~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~l~~~a~~~L~~l~~~~--~~l~--~~~ 472 (844)
|.++.|+....|..++..++.-. +-.+.+|-|+..|.+.- ..+..+++.++.+|..++++- +.+. .+.
T Consensus 99 L~~~ep~~~s~Aaq~va~IA~~E------lP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~ 172 (859)
T KOG1241|consen 99 LGSPEPRRPSSAAQCVAAIACIE------LPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSND 172 (859)
T ss_pred cCCCCCCccchHHHHHHHHHHhh------CchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhH
Confidence 33344444445555555554320 01345666666665431 122357899999999999873 3322 235
Q ss_pred hHHHHHHhhcc--CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 473 VAQQMLSLLNL--CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 473 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
.+..++.-++. ++..+|-.|+.+|.+--..-. ..........=.++..++.-.+++.+++.+|..+|..+..-.=+.
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~-~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~ 251 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK-ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEF 251 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH-HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666654 567899999999987432210 011111222335777888888999999999999997764322122
Q ss_pred HHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHH---------------H---HhCCChHHHHHHhhc
Q 003146 551 LAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATEL---------------L---KKTNLLPSLISAATS 612 (844)
Q Consensus 551 i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~---------------l---~~~~~v~~L~~ll~~ 612 (844)
+...+.+..+..-+.-.+ ++++++...+...-++++...-++... + .-.+.+|.|+++|..
T Consensus 252 m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 252 MEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 222222222222333344 566677766666665554322111100 0 012677888888876
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCcccccccccc
Q 003146 613 STITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISK 692 (844)
Q Consensus 613 ~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~ 692 (844)
.+.............|...|.-++.+...+ +.. -.+|-+-+-+++++..-|..|+.+.+.+-.+.....
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~----Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~------ 399 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK------ 399 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHhccc----chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh------
Confidence 332222212222223333333333321111 111 234444445667888899999999997765433311
Q ss_pred ceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHH
Q 003146 693 WLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAI 772 (844)
Q Consensus 693 ~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~l 772 (844)
..-+..++++.++.++.++.--|+..+.++|+.+++.-. +.........+-+..+
T Consensus 400 ------------------------Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 400 ------------------------LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSAL 454 (859)
T ss_pred ------------------------hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHH
Confidence 111245789999999999999999999999999886431 1111122222233344
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhh-Hhhcccc--c-------hhHHhhhhcC---CCCchHHHHHHHHHHhhhh
Q 003146 773 IKVLESGNAKAQEKALWILERIFRIEEHR-VKYGESA--Q-------VVLIDLAQNG---DSRLKPAVAKLLAQLELLQ 838 (844)
Q Consensus 773 v~ll~~~~~~~~~~A~~~L~~i~~~~~~~-~~~~~~a--~-------~~Lv~ll~~~---~~~~~~~aa~~L~~l~~~~ 838 (844)
++-| ...|.+..++.|++..+....... ..-+.+. . ..|++.+... +.+.|..|-.+|..|=...
T Consensus 455 ~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 455 LEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred HHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence 4434 357899999999999987542111 1111111 1 2455555542 3668888988888774443
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00015 Score=81.90 Aligned_cols=316 Identities=18% Similarity=0.147 Sum_probs=224.8
Q ss_pred CHHHHHHHhCC-CCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC---CHHHHHHHHHHHHHccCCCh---
Q 003146 226 IIAVLLNRLGS-SKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR---DVEEQREAVGLLLDLSDLPA--- 298 (844)
Q Consensus 226 ~~p~l~~lL~s-~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~---~~~~~~~A~~~L~~Ls~~~~--- 298 (844)
+||+|++...+ .-.+.|..|+..|+.++.+ ++..+.. .|++++++.|.. |++.-+.++.++..+..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 78888888764 4567899999999999743 4455444 468889999987 46778888888888865541
Q ss_pred --------------hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC--CccHHHHH-HcCChHHHHHHhccC
Q 003146 299 --------------VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN--TQNALHMA-EAGYFKPLVQYLKEG 361 (844)
Q Consensus 299 --------------~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~--~~~~~~i~-~~g~i~~Lv~~L~~~ 361 (844)
..+.++...+.|..|+..+...|-.++..++..|.+|-.+ .+-+..+. ..-+|..++.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 3455666689999999999999999999999999998654 33455554 577999999999998
Q ss_pred CHHHHHHHHHHHHHhhcCch-hhhhhhhcCchHHHHHHhhcCC-H---HHHHHHHHHHHHhhcC-cccHHHHHHcCChHH
Q 003146 362 SDMSKILMATALSRMELTDQ-SRASLGEDGAIEPLVRMFRVGK-L---EAKLSALNALQNLSLL-AENIQRLVISGIVSP 435 (844)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~---~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~ 435 (844)
...+|..+.-.|..|+.++. .+..+.=.++...|..+++... . -+.++|+..|-||-.+ ..|...+.+.+.||.
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 88888888888999988764 4444444789999999997532 2 3588999999999976 568888888999999
Q ss_pred HHHHhhccCCcc--------hh--hHHHHHHHHHHHhcCh----------hhhcccchHHHHHHhhccC--ChHHHHHHH
Q 003146 436 LLQLLFSVTSVL--------MT--LREPASAILARIAQSE----------SILVNKDVAQQMLSLLNLC--SPTIQYHLL 493 (844)
Q Consensus 436 Lv~lL~~~~~~~--------~~--l~~~a~~~L~~l~~~~----------~~l~~~~~i~~Lv~lL~~~--~~~~~~~a~ 493 (844)
|..+|....... .. -...++.++..++.-. .++.+.+.+..|..++..+ ..+++..++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 998876432111 01 1234566666665542 3566677888888877664 346888888
Q ss_pred HHHHHhhcCCChhHHHHHHHhCC------cHHH----HHHHhccCC-HHHHHHHHHHHHHhhhhh
Q 003146 494 HALNSIAAHSSASNVRRKMKENG------AIHL----LLPFLMETN-ANIRAAALNLVCTLSKDV 547 (844)
Q Consensus 494 ~~L~~L~~~~~~~~~~~~i~~~g------~i~~----Lv~ll~~~~-~~v~~~A~~~L~~ls~~~ 547 (844)
-+..++-+.+ ..++..+.+-. -.+. +..+..+.. ...|.+...++.....+.
T Consensus 339 itvAevVRgn--~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 339 ITVAEVVRGN--ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHhc--hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 8888888775 44555444321 1122 223333333 467888888887665443
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=7.3e-05 Score=84.24 Aligned_cols=461 Identities=16% Similarity=0.174 Sum_probs=278.8
Q ss_pred HHHHHHHHcCCChH-HHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCC--CchHHHHHHHHHHHhHhcCh----
Q 003146 185 IDDVMLQLKHGDDK-NLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSS--KPYNRLIMIQILRNLASENA---- 257 (844)
Q Consensus 185 i~~lv~~L~~~~~~-~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~--~~~~~~~a~~~L~~L~~~~~---- 257 (844)
|+.++..+.+++-- +...|+..+..+++. | |..+...| .+.+++.|..+ |+++...++.++.++....+
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srk--Y-R~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRK--Y-REEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHH--H-HHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 55555555554432 556677888888853 2 44555554 67788888744 67788889999999887653
Q ss_pred --hhH------H-----HHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC--ChhHHHHhhhhCcHHHHHHhhcCCC
Q 003146 258 --DYK------E-----KMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL--PAVWRRIGRIQGCIVMLVSMLSGND 321 (844)
Q Consensus 258 --~~~------~-----~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~s~d 321 (844)
..+ . .+...+-|..++.++.. +-.+|..++..|..+-.+ .+.+..+...+-+|..|+.+|.+.-
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 111 1 12346788888888877 567999999999987543 5788888876889999999999888
Q ss_pred hHHHHHHHHHHHHhccCCccHHHHH-HcCChHHHHHHhccCC----HHHHHHHHHHHHHhhcCc-hhhhhhhhcCchHHH
Q 003146 322 PVASHDAGKLLNALSSNTQNALHMA-EAGYFKPLVQYLKEGS----DMSKILMATALSRMELTD-QSRASLGEDGAIEPL 395 (844)
Q Consensus 322 ~~~~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~~----~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~L 395 (844)
..++..|+-.|..|..+..+..+++ =.+++..|..++.... .-+...|...|.||-.++ .|+..+.+.+-||.|
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 8889999999999998776655555 4789999999997532 235567888888887755 778888889999999
Q ss_pred HHHhhc---CCH--------HH--HHHHHHHHHHhhcC-------cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHH
Q 003146 396 VRMFRV---GKL--------EA--KLSALNALQNLSLL-------AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPAS 455 (844)
Q Consensus 396 v~lL~~---~~~--------~~--~~~A~~aL~nLs~~-------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~ 455 (844)
.++|.. ++. ++ .-.++.+++.|... ..|...+...+++..|..++.++. .+..++..+.
T Consensus 260 ~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesi 338 (970)
T KOG0946|consen 260 LKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESI 338 (970)
T ss_pred HhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHH
Confidence 988853 221 11 12244444444421 124456778899999998887765 4567888888
Q ss_pred HHHHHHhcChh--------hhc-c-cchHHHHH----Hhhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHH
Q 003146 456 AILARIAQSES--------ILV-N-KDVAQQML----SLLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHL 520 (844)
Q Consensus 456 ~~L~~l~~~~~--------~l~-~-~~~i~~Lv----~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~ 520 (844)
-++++...+.. +.. + ++-.+.++ .+... ..+..|.++..+|......+ .+-+.. ++..
T Consensus 339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN--~~gq~~-----~l~t 411 (970)
T KOG0946|consen 339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN--DDGQRK-----FLKT 411 (970)
T ss_pred HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc--hhhHHH-----HHHH
Confidence 88888887741 111 1 11122222 22222 45678999999998887665 232222 4666
Q ss_pred HHHHhccCCH-HHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 003146 521 LLPFLMETNA-NIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKK 599 (844)
Q Consensus 521 Lv~ll~~~~~-~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~ 599 (844)
+++...+.+. .+.....-+....+ .+.+...+.. ..|..++- ++...+..-+.+..+-+.+++...-
T Consensus 412 llp~~~nst~Nsl~ag~l~~~~l~s---~d~~~nwFt~---v~lmh~l~--dn~~~kEeLlrV~l~~~~gn~p~tl---- 479 (970)
T KOG0946|consen 412 LLPSSTNSTSNSLSAGQLLLVGLSS---TDSLDNWFTA---VILMHLLQ--DNDQLKEELLRVPLAVDTGNDPDTL---- 479 (970)
T ss_pred HhhhhccccccchhhhhHHHHhhcc---chHHHHHHHH---HHHHHHHH--HhHHHHHHHHhhhhcccCCCCchHH----
Confidence 6666666555 34433333332222 1222222211 12223222 1222233333334444444432111
Q ss_pred CCChHHHHHHhhc-CCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC-----CHHHHHHHHH
Q 003146 600 TNLLPSLISAATS-STITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE-----SVVAKSSASI 673 (844)
Q Consensus 600 ~~~v~~L~~ll~~-~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~vk~~Aa~ 673 (844)
+...+..+.. ++.. ....-..+..|+.|-..........+.+.+.|+.|...+.+. ...+|-..|.
T Consensus 480 ---L~~~ct~~~~~~t~r-----~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~ 551 (970)
T KOG0946|consen 480 ---LFQQCTNLKLQGTSR-----HQTRVGLLMLLITWLYGCPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAF 551 (970)
T ss_pred ---HHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHcCCcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 1111111111 1100 011223555556666544444555677888888888777433 2346777777
Q ss_pred HHHH
Q 003146 674 SLAQ 677 (844)
Q Consensus 674 aL~~ 677 (844)
.|+-
T Consensus 552 lLgl 555 (970)
T KOG0946|consen 552 LLGL 555 (970)
T ss_pred HHHH
Confidence 6663
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00057 Score=77.17 Aligned_cols=535 Identities=11% Similarity=0.054 Sum_probs=286.7
Q ss_pred HHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-----C-HHHHHHHHHHHHHccCCChhHHHHhh
Q 003146 232 NRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-----D-VEEQREAVGLLLDLSDLPAVWRRIGR 305 (844)
Q Consensus 232 ~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-----~-~~~~~~A~~~L~~Ls~~~~~~~~i~~ 305 (844)
.-|+++.+.....|..++..++.-. .-.+..|.|+..|.+ . ...++.++.+|.-+|.+-+.......
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~E-------lP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIE-------LPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhh-------CchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3355566666666777776665311 112334455555543 2 23567788888888876433333333
Q ss_pred hhCcHHHHHHhhc--CCChHHHHHHHHHHHHhcc-CCccHHHHHHcC-ChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-
Q 003146 306 IQGCIVMLVSMLS--GNDPVASHDAGKLLNALSS-NTQNALHMAEAG-YFKPLVQYLKEGSDMSKILMATALSRMELTD- 380 (844)
Q Consensus 306 ~~g~i~~Lv~lL~--s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g-~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~- 380 (844)
...++..++.-.+ .++..++-.|..+|.|--. ...|-..=.+.+ .++..++.-++++.+++..|..+|..+..-.
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 2334555555333 3566788888889887532 222221112222 2334456666677788888888888876543
Q ss_pred hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC----------------c-ccHHHHH--HcCChHHHHHHhh
Q 003146 381 QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL----------------A-ENIQRLV--ISGIVSPLLQLLF 441 (844)
Q Consensus 381 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~----------------~-~~~~~i~--~~g~v~~Lv~lL~ 441 (844)
+.-..-........-+.-.++.++.+...|..-=.++|.. + .+..... -.+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 2222112222333344555688888888888766666631 1 1111111 1467888999987
Q ss_pred ccC----CcchhhHHHHHHHHHHHhcCh--hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhC
Q 003146 442 SVT----SVLMTLREPASAILARIAQSE--SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKEN 515 (844)
Q Consensus 442 ~~~----~~~~~l~~~a~~~L~~l~~~~--~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~ 515 (844)
..+ .+.......|-.+|.-++... .++. .+++.+-+-+++++++-|+.++-++.++-..+ ...+-.-...
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp--~~~~Lt~iV~ 405 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNPDWRNREAAVMAFGSILEGP--EPDKLTPIVI 405 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC--chhhhhHHHh
Confidence 632 122334445555565555442 2222 34455555677889999999999999987775 4444444567
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHH-HhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHH
Q 003146 516 GAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAE-QLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKAT 594 (844)
Q Consensus 516 g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~-~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~ 594 (844)
++++.++.++.++.--++..++|.+..++.+.++.+-. ..-...+..++.-|. +.+.+-..+++++.+|+..-.+
T Consensus 406 qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~e-- 481 (859)
T KOG1241|consen 406 QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYE-- 481 (859)
T ss_pred hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHH--
Confidence 79999999999888899999999999998877643322 222334555555554 4567778899999988532211
Q ss_pred HHHHhC-------CChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHH---------
Q 003146 595 ELLKKT-------NLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVK--------- 658 (844)
Q Consensus 595 ~~l~~~-------~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~--------- 658 (844)
+..+. ...+.+++-|-......+...+.++-.+-.+|..+......++-..+. +..+....
T Consensus 482 -A~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~--~~~l~il~kl~q~i~~~ 558 (859)
T KOG1241|consen 482 -AAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ--KLTLVILEKLDQTISSQ 558 (859)
T ss_pred -hccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 11111 122333333322211111112234555555665555433222221111 11111111
Q ss_pred HhccCC----HHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcC
Q 003146 659 LLSSES----VVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEG 734 (844)
Q Consensus 659 lL~~~~----~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~ 734 (844)
.++.++ .++|..-+..|+.+-...... +.-+....+..|++++++
T Consensus 559 ~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~-------------------------------~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 559 ILSLADRAQLNELQSLLCNTLQSIIRKVGSD-------------------------------IREVSDQIMGLFLRIFES 607 (859)
T ss_pred hccHhhHHHHHHHHHHHHHHHHHHHHHcccc-------------------------------chhHHHHHHHHHHHHHcC
Confidence 222221 123444444444433221110 111123456788888887
Q ss_pred -CChhhHHHHHHHHHhhhccc--cchhhhHHHHhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHHhhh-hhhHhhccccc
Q 003146 735 -KEREADETVLGALASLLQDE--TWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEKALWILERIFRIE-EHRVKYGESAQ 809 (844)
Q Consensus 735 -~~~~v~~~A~~AL~~L~~~~--~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~~i~~~~-~~~~~~~~~a~ 809 (844)
+...|.+.|..|+++++..= .+.++...+ .|-|..=| .-.+..+-..|...++.+++.- +.-..|....-
T Consensus 608 ~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f-----~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~m 682 (859)
T KOG1241|consen 608 KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAF-----KPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELM 682 (859)
T ss_pred CccccchHHHHHHHHHHHHHHhHhHHHHHHHH-----HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 45567888888888887542 122222211 23333333 2334456666777888887753 22345554444
Q ss_pred hhHHhhhhcCC
Q 003146 810 VVLIDLAQNGD 820 (844)
Q Consensus 810 ~~Lv~ll~~~~ 820 (844)
..|++=+++..
T Consensus 683 t~Lvq~Lss~~ 693 (859)
T KOG1241|consen 683 TVLVQCLSSPN 693 (859)
T ss_pred HHHHHHccCcc
Confidence 46666555443
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2e-06 Score=89.57 Aligned_cols=183 Identities=20% Similarity=0.204 Sum_probs=153.6
Q ss_pred CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-hhhhhhhhcCchHHHHH
Q 003146 319 GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD-QSRASLGEDGAIEPLVR 397 (844)
Q Consensus 319 s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ 397 (844)
+.+++-++.|..-|..+..+-+|-..+...|+..+++.++.+++..+|..||++++..+.++ ..+..+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45677778888888888888888999999999999999999999999999999999998865 78999999999999999
Q ss_pred HhhcCCH-HHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhccc
Q 003146 398 MFRVGKL-EAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNK 471 (844)
Q Consensus 398 lL~~~~~-~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~ 471 (844)
+|.+.++ .++..|+.|+++|-.+ +.....+...++...|...|.+++.. +.++.+++..+..+.... .++...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~-~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTS-VKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9987655 6789999999999987 55777888888899999999987553 678999999999998774 344445
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcC
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAH 502 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 502 (844)
+....+..+....+..+++.++.++..+...
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 6666777777788888999999888776554
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.60 E-value=1.2e-06 Score=94.24 Aligned_cols=195 Identities=16% Similarity=0.170 Sum_probs=139.1
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHccCC-ChhHHHHhhh-----hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003146 269 LSALVKSLT---RDVEEQREAVGLLLDLSDL-PAVWRRIGRI-----QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT 339 (844)
Q Consensus 269 i~~Lv~~L~---~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~-----~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~ 339 (844)
...++++|+ ++.+..+..+..+..+... +.....+... .....++++++.++|..++..|+..|..|....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 334444443 3456777788888877655 4444444331 236788889999999999999999999998655
Q ss_pred ccHHHHHHcCChHHHHHHhccC----CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHh-----hcC--CHHHHH
Q 003146 340 QNALHMAEAGYFKPLVQYLKEG----SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMF-----RVG--KLEAKL 408 (844)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~~--~~~~~~ 408 (844)
..+..-...+.++.++.+|++. +.+.+..++.+|.+|...+++|..+.+.|+++.|..++ .++ +...+.
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 5443333356778888888763 23445788999999999999999999999999999999 222 335688
Q ss_pred HHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 409 SALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 409 ~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
.++-++|-|+-+++....+.+.+.||.|+++++.... +.+.+-+.++|.|+....
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~K--EKvvRv~la~l~Nl~~~~ 271 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIK--EKVVRVSLAILRNLLSKA 271 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--S--HHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhccc--chHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998875 467789999999998875
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.59 E-value=1.7e-06 Score=93.28 Aligned_cols=225 Identities=20% Similarity=0.158 Sum_probs=155.9
Q ss_pred CHHHHHHHhC--CCCchHHHHHHHHHHHhHhcChhhHHHHhc------CCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC
Q 003146 226 IIAVLLNRLG--SSKPYNRLIMIQILRNLASENADYKEKMAN------VGSLSALVKSLTR-DVEEQREAVGLLLDLSDL 296 (844)
Q Consensus 226 ~~p~l~~lL~--s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~------~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~ 296 (844)
....++.+|+ +++.++....+..+..+....+.....+.. ......+++.+.+ |.-.+..|+..|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 4445555554 467888888999999998877765554433 1256778888876 566888999999998766
Q ss_pred ChhHHHHhhhhCcHHHHHHhhcC----CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHh-----ccC--CHHH
Q 003146 297 PAVWRRIGRIQGCIVMLVSMLSG----NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYL-----KEG--SDMS 365 (844)
Q Consensus 297 ~~~~~~i~~~~g~i~~Lv~lL~s----~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L-----~~~--~~~~ 365 (844)
......-.. .+.++.+++.|++ ++...+..|+.+|.+|...++.|..+.+.|+++.+..+| .++ ....
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 544333322 4677788877764 456677899999999999999999999999999999999 233 2456
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcC-CHHHHHHHHHHHHHhhcCcc--cHHHHHHcCChHHHHHHhhc
Q 003146 366 KILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVG-KLEAKLSALNALQNLSLLAE--NIQRLVISGIVSPLLQLLFS 442 (844)
Q Consensus 366 ~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~--~~~~i~~~g~v~~Lv~lL~~ 442 (844)
+.++.-+++-|+.+++....+...+.|+.|+.+++.. ...+.+-++.+|.||..... +...|+..|+++.+ +.|..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l-~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL-QNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH-HHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH-HHHhc
Confidence 7799999999999999988898888999999999864 56788899999999998766 88899988877654 44544
Q ss_pred cCCcchhhHH
Q 003146 443 VTSVLMTLRE 452 (844)
Q Consensus 443 ~~~~~~~l~~ 452 (844)
..-.++++.+
T Consensus 294 rk~~Dedl~e 303 (312)
T PF03224_consen 294 RKWSDEDLTE 303 (312)
T ss_dssp S--SSHHHHH
T ss_pred CCCCCHHHHH
Confidence 4322234433
No 53
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.54 E-value=1.8e-05 Score=87.20 Aligned_cols=240 Identities=15% Similarity=0.056 Sum_probs=171.6
Q ss_pred CHHHHHHHhC-CCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC-HHHHHHHHHHHHHccCCChhHHHH
Q 003146 226 IIAVLLNRLG-SSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD-VEEQREAVGLLLDLSDLPAVWRRI 303 (844)
Q Consensus 226 ~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~~~~~~~~i 303 (844)
.++.++..|. .++..++..+..++.. ++. ..++..++..|.+. ..++..++..|..+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA----QED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc----cCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 6777888884 4556666555444431 111 11378899999884 45888888888743
Q ss_pred hhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhh
Q 003146 304 GRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSR 383 (844)
Q Consensus 304 ~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~ 383 (844)
.. .++.+.|+.+|.++++.++..++.++.. ......++++.+|++.+..++..++.+|+.+.
T Consensus 114 ~~-~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------ 175 (410)
T TIGR02270 114 GG-RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELP------ 175 (410)
T ss_pred Cc-hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence 22 7788999999999999999888877755 11245678999999999999999999999854
Q ss_pred hhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 384 ASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 384 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
...+++.|...+.+.++.++..|+.+|..+.. ..+++++..+...... ........++...
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~---~~~~~l~~~lal~-- 236 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGG---PHRQRLLVLLAVA-- 236 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCc---cHHHHHHHHHHhC--
Confidence 44778889999999999999999999976643 2345566664443332 1333444444433
Q ss_pred ChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 464 SESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTL 543 (844)
Q Consensus 464 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~l 543 (844)
.....+..|..+++.+ .++..++.+|..+-.. ..++.|+..+.+.. +++.|...+..+
T Consensus 237 -----~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p-------------~av~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 237 -----GGPDAQAWLRELLQAA--ATRREALRAVGLVGDV-------------EAAPWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred -----CchhHHHHHHHHhcCh--hhHHHHHHHHHHcCCc-------------chHHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 2335678888888664 4899999888876443 37899999887654 888999988887
Q ss_pred hh
Q 003146 544 SK 545 (844)
Q Consensus 544 s~ 545 (844)
+.
T Consensus 295 tG 296 (410)
T TIGR02270 295 TG 296 (410)
T ss_pred hC
Confidence 64
No 54
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.49 E-value=0.0005 Score=79.09 Aligned_cols=546 Identities=14% Similarity=0.092 Sum_probs=271.1
Q ss_pred HhCCCCchHHHHHHHHHHHhHhcChhhH-HHHhcCCcHHHHHHHhcC-C--HHHHHHHHHHHHHc-cCCChhHHHHhh-h
Q 003146 233 RLGSSKPYNRLIMIQILRNLASENADYK-EKMANVGSLSALVKSLTR-D--VEEQREAVGLLLDL-SDLPAVWRRIGR-I 306 (844)
Q Consensus 233 lL~s~~~~~~~~a~~~L~~L~~~~~~~~-~~i~~~g~i~~Lv~~L~~-~--~~~~~~A~~~L~~L-s~~~~~~~~i~~-~ 306 (844)
.|++.....+......|..++...+... +.+ ...++-++..|.+ + ...+..++..|... ..++ ++.|-. .
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~--~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~--p~~fhp~~ 518 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHI--PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP--PEVFHPHL 518 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcc--cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC--hhhcccch
Confidence 3445555566667777777765444332 111 1245666777765 2 23566676666543 3332 111111 0
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhcc--CCccHHHHHH-cC----ChHHHHHHhccC--CHHHHHHHHHHHHHhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSS--NTQNALHMAE-AG----YFKPLVQYLKEG--SDMSKILMATALSRME 377 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~-~g----~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls 377 (844)
.-..|+++.-...+-+.+...|..+...++. .+.......+ .. .+...++.|... +.++|+.|..+.+.+.
T Consensus 519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i 598 (1233)
T KOG1824|consen 519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQII 598 (1233)
T ss_pred hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 2233444444455556666666666666542 1111111110 01 122334555543 4678888887776654
Q ss_pred cC--chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHH-HHHcCChHHHHHHhhccCCcchhhHHHH
Q 003146 378 LT--DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQR-LVISGIVSPLLQLLFSVTSVLMTLREPA 454 (844)
Q Consensus 378 ~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~-i~~~g~v~~Lv~lL~~~~~~~~~l~~~a 454 (844)
.+ |.-+..+ ...++-|++-|+ +.-.+-.|++|+..++..+-.... -+-..+++.+...++.... .++-..
T Consensus 599 ~~fgD~l~~eL--~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r---~lr~~~ 671 (1233)
T KOG1824|consen 599 ANFGDFLGNEL--PRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR---ALRLAT 671 (1233)
T ss_pred HHHhhhhhhhh--HHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 32 2111111 234555555554 566788999999999876542221 1123356778888776642 355555
Q ss_pred HHHHHHHhcChhhhcc----cchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH
Q 003146 455 SAILARIAQSESILVN----KDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA 530 (844)
Q Consensus 455 ~~~L~~l~~~~~~l~~----~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 530 (844)
..++-.|..+-.-... +-.+..+..++..++-.+-+.|+..|..+....+ ..-.-.....++.++.+++++--
T Consensus 672 l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p---s~l~~~~~~iL~~ii~ll~Spll 748 (1233)
T KOG1824|consen 672 LTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP---SSLLKISNPILDEIIRLLRSPLL 748 (1233)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc---HHHHHHhhhhHHHHHHHhhCccc
Confidence 5555555443210001 1223344455666677788889999988877642 12233345578999999988764
Q ss_pred HHHHHHHHHHHH----hhhhhhHHHHHHhchhhHHHHHHHhcCCCCH--------HHHHHHHHHHhcCCCCCHHHHHHHH
Q 003146 531 NIRAAALNLVCT----LSKDVYEELAEQLGDKYLNILVDITLSSTSE--------NEKAAAVGILSNLPVSNKKATELLK 598 (844)
Q Consensus 531 ~v~~~A~~~L~~----ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~--------~~~~~a~~~L~~L~~~~~~~~~~l~ 598 (844)
... |...+-. +..+..++. ....++.++...-.. ..-...+.+.+.|+...++-
T Consensus 749 qg~--al~~~l~~f~alV~t~~~~l-------~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~----- 814 (1233)
T KOG1824|consen 749 QGG--ALSALLLFFQALVITKEPDL-------DYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK----- 814 (1233)
T ss_pred cch--HHHHHHHHHHHHHhcCCCCc-------cHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-----
Confidence 332 2222211 111111110 244456655542211 11111222222221111110
Q ss_pred hCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003146 599 KTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQL 678 (844)
Q Consensus 599 ~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~l 678 (844)
.......++.-+.++.... .++-.+.-.|+.+....+.-. ..++-..+++-+++++.+++.+|+.|||++
T Consensus 815 s~s~a~kl~~~~~s~~s~~-----~ikvfa~LslGElgr~~~~s~-----~~e~~~~iieaf~sp~edvksAAs~ALGsl 884 (1233)
T KOG1824|consen 815 SKSLATKLIQDLQSPKSSD-----SIKVFALLSLGELGRRKDLSP-----QNELKDTIIEAFNSPSEDVKSAASYALGSL 884 (1233)
T ss_pred chhHHHHHHHHHhCCCCch-----hHHHHHHhhhhhhccCCCCCc-----chhhHHHHHHHcCCChHHHHHHHHHHhhhh
Confidence 0112223333333332211 244455555665554432211 223444678889999999999999999999
Q ss_pred hhcCccccccccccceecC--CCC-CCcCcccccc-----cCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhh
Q 003146 679 SQNSLSLRKSKISKWLCVP--PSA-DAFCEVHDGY-----CFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASL 750 (844)
Q Consensus 679 s~~~~~~~~~~~~~~~~~~--~~~-~~~c~~h~~~-----~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L 750 (844)
+.++...--| |.|-. +.+ ..+-.+|.-. -++. .+.-.-.+.+..|.+-.+...+.+|-..+.+|+.|
T Consensus 885 ~vgnl~~yLp----fil~qi~sqpk~QyLLLhSlkevi~~~svd-~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 885 AVGNLPKYLP----FILEQIESQPKRQYLLLHSLKEVIVSASVD-GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred hcCchHhHHH----HHHHHHhcchHhHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 9754331101 01100 000 0011111000 0000 00000122344455555666778888888889888
Q ss_pred hccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhcc---ccchhHHhhhhcCCCCchHHH
Q 003146 751 LQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGE---SAQVVLIDLAQNGDSRLKPAV 827 (844)
Q Consensus 751 ~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~---~a~~~Lv~ll~~~~~~~~~~a 827 (844)
+..+. + . -++.|-..+.++.+..|.-++.++.-.+. +.-+.... ........+++++|..||+.|
T Consensus 960 ~l~ep-e----s-----LlpkL~~~~~S~a~~~rs~vvsavKfsis--d~p~~id~~lk~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen 960 VLIEP-E----S-----LLPKLKLLLRSEASNTRSSVVSAVKFSIS--DQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred HhCCh-H----H-----HHHHHHHHhcCCCcchhhhhhheeeeeec--CCCCccCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 86542 1 1 26667777788888888877766542221 11111111 111245668899999999988
Q ss_pred HHHHHH
Q 003146 828 AKLLAQ 833 (844)
Q Consensus 828 a~~L~~ 833 (844)
--++-.
T Consensus 1028 Lvv~nS 1033 (1233)
T KOG1824|consen 1028 LVVLNS 1033 (1233)
T ss_pred HHHHHH
Confidence 877654
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00045 Score=78.47 Aligned_cols=440 Identities=17% Similarity=0.177 Sum_probs=234.8
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHcc-CCChhHHHHhhhh
Q 003146 230 LLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLS-DLPAVWRRIGRIQ 307 (844)
Q Consensus 230 l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls-~~~~~~~~i~~~~ 307 (844)
+.+-|.+++..+..-|+.+|++++.. +- . ....+...++|++ ++.+|++|+-+...+- +.|+.- .
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~--Em---a--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~------e 178 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSP--EM---A--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV------E 178 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCH--HH---h--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH------H
Confidence 44456788888888888888888632 21 1 1134555666666 5668888776555443 334432 3
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCccHHHHHHcCChHHHHHHhcc---------------CCHHHHHHHHH
Q 003146 308 GCIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQNALHMAEAGYFKPLVQYLKE---------------GSDMSKILMAT 371 (844)
Q Consensus 308 g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~---------------~~~~~~~~aa~ 371 (844)
..++.-..+|.+.+..+...++..+..++. ++++-...-+ .++.+|..|+. .++..+....
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL- 255 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL- 255 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH-
Confidence 345566777777777777777777777764 3333222222 44555555432 1122222222
Q ss_pred HHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc---cHHHHHHcCChHHHHHHhhccCCcch
Q 003146 372 ALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE---NIQRLVISGIVSPLLQLLFSVTSVLM 448 (844)
Q Consensus 372 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---~~~~i~~~g~v~~Lv~lL~~~~~~~~ 448 (844)
.++++|..++++....-...|..++.+.+ |....+=-.+|..++.+..+.
T Consensus 256 ----------------------rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~----- 308 (866)
T KOG1062|consen 256 ----------------------RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS----- 308 (866)
T ss_pred ----------------------HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCc-----
Confidence 23444555555555555566666665433 333222222344444443222
Q ss_pred hhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC
Q 003146 449 TLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET 528 (844)
Q Consensus 449 ~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~ 528 (844)
.+++.|+.+|+.. |.+.+..+|+.++..|..+-...+....|- =..+++.|++.
T Consensus 309 ~LrvlainiLgkF-------------------L~n~d~NirYvaLn~L~r~V~~d~~avqrH-------r~tIleCL~Dp 362 (866)
T KOG1062|consen 309 GLRVLAINILGKF-------------------LLNRDNNIRYVALNMLLRVVQQDPTAVQRH-------RSTILECLKDP 362 (866)
T ss_pred hHHHHHHHHHHHH-------------------hcCCccceeeeehhhHHhhhcCCcHHHHHH-------HHHHHHHhcCC
Confidence 3667776666644 555666677777777777665542111111 13567889999
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHH
Q 003146 529 NANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLIS 608 (844)
Q Consensus 529 ~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ 608 (844)
+..+|+.|..+++.|..... +.. .++.|+.+|... +++.+...++-+..++.....-..|. +..+.+
T Consensus 363 D~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~-----idtml~ 429 (866)
T KOG1062|consen 363 DVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWH-----IDTMLK 429 (866)
T ss_pred cHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhH-----HHHHHH
Confidence 99999999999998875443 211 345677788765 66777665555555543222222232 234444
Q ss_pred HhhcCCCCCCCCchhHHHHHHHHHHhccCCC----CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCcc
Q 003146 609 AATSSTITKTHSTPWLVESVAGILIRFTDPS----DKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLS 684 (844)
Q Consensus 609 ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~ 684 (844)
.+...-. . +.+.++..+.++.... +.....++... +.... ++..+.+....-|.|++|..+.---+
T Consensus 430 Vl~~aG~---~----V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~ 499 (866)
T KOG1062|consen 430 VLKTAGD---F----VNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLD 499 (866)
T ss_pred HHHhccc---c----cchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence 4433211 1 1122222333222221 11111111100 00001 22333444566789999877631111
Q ss_pred ccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc--CCChhhHHHHHHHHHhhhccccchhhhHH
Q 003146 685 LRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE--GKEREADETVLGALASLLQDETWESGSNY 762 (844)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~--~~~~~v~~~A~~AL~~L~~~~~~~~~~~~ 762 (844)
+.|. +.-...-+..++..|..++. ..+..++-.|+.||..|..-..-
T Consensus 500 -----------------~~~~--------~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s------ 548 (866)
T KOG1062|consen 500 -----------------GANE--------EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS------ 548 (866)
T ss_pred -----------------Cccc--------cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc------
Confidence 0000 00011224567788888875 45688999999999999865420
Q ss_pred HHhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHH
Q 003146 763 LAKLSGTQAIIKVL-ESGNAKAQEKALWILERIF 795 (844)
Q Consensus 763 i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~~i~ 795 (844)
...-|+.++.-. .+-+.++|.+|.. +..+|
T Consensus 549 --~~~ri~~lI~~~~~s~~~elQQRa~E-~~~l~ 579 (866)
T KOG1062|consen 549 --SSERIKQLISSYKSSLDTELQQRAVE-YNALF 579 (866)
T ss_pred --cHHHHHHHHHHhcccccHHHHHHHHH-HHHHH
Confidence 012355555444 5678899999876 44555
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.45 E-value=2.6e-05 Score=85.89 Aligned_cols=243 Identities=16% Similarity=0.100 Sum_probs=170.5
Q ss_pred hCcHHHHHHhhc-CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhh
Q 003146 307 QGCIVMLVSMLS-GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRAS 385 (844)
Q Consensus 307 ~g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (844)
..+++.|+..|. .+++.+...++.++. ...+ ..++..|++.|.+.++.++..++.+|+.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGW---------- 112 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhc----------
Confidence 557899999994 567777766555553 2211 1238899999999988899999999987
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
+...++.+.|+.+|++.++.++..++.++.... ....+++..+|.+.+ ..++..|+.+|..+.
T Consensus 113 i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d---~~Vra~A~raLG~l~--- 175 (410)
T TIGR02270 113 LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHED---ALVRAAALRALGELP--- 175 (410)
T ss_pred CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCC---HHHHHHHHHHHHhhc---
Confidence 345678899999999999999998887776521 234568888887554 468899999998873
Q ss_pred hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003146 466 SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSK 545 (844)
Q Consensus 466 ~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~ 545 (844)
....++.|...+.+.++.+|..|+.++..+... .++..+..+........+..+...+... .
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------------~A~~~l~~~~~~~g~~~~~~l~~~lal~-~ 237 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------------LAWGVCRRFQVLEGGPHRQRLLVLLAVA-G 237 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------------hHHHHHHHHHhccCccHHHHHHHHHHhC-C
Confidence 456778888889999999999999999776331 2456666655544444444444444332 1
Q ss_pred hhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHH
Q 003146 546 DVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLV 625 (844)
Q Consensus 546 ~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~ 625 (844)
. +..+..|..++.+ +.++..++.+++.+-. ..+++.|+..+.+.. +.
T Consensus 238 --~--------~~a~~~L~~ll~d---~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~---------~a 284 (410)
T TIGR02270 238 --G--------PDAQAWLRELLQA---AATRREALRAVGLVGD-----------VEAAPWCLEAMREPP---------WA 284 (410)
T ss_pred --c--------hhHHHHHHHHhcC---hhhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH---------HH
Confidence 1 1255667777664 2378788888888743 557889999886543 44
Q ss_pred HHHHHHHHhccC
Q 003146 626 ESVAGILIRFTD 637 (844)
Q Consensus 626 e~a~~aL~~l~~ 637 (844)
..|..++..+|-
T Consensus 285 R~A~eA~~~ItG 296 (410)
T TIGR02270 285 RLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHHhhC
Confidence 566677766664
No 57
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8.4e-05 Score=82.54 Aligned_cols=348 Identities=15% Similarity=0.084 Sum_probs=205.7
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhh
Q 003146 308 GCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLG 387 (844)
Q Consensus 308 g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (844)
..|..|.+-+..+.+.+|+....+|.-+....+.... .-..+.+.+++..+.-..+..++..++.+..+. .-..+.
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~ 171 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLK 171 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhh
Confidence 3566788888889999999888888777543322111 124556777888777677777888888776543 222344
Q ss_pred hcCchHHHHHHhhcCCHHHHH-HHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh
Q 003146 388 EDGAIEPLVRMFRVGKLEAKL-SALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES 466 (844)
Q Consensus 388 ~~g~i~~Lv~lL~~~~~~~~~-~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~ 466 (844)
+.+.+..|-....+.....++ .+.-+.-..+.+-. ...+.+.+|.+-.++..-.+....+++.+..+...+...-.
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 567777888887776554433 23322222222111 12245556656566655433335577777666655544321
Q ss_pred hhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh
Q 003146 467 ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKD 546 (844)
Q Consensus 467 ~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~ 546 (844)
...-...++.++.-+....+..+.+++..|..+.... .-+-.......+|.+.+.|.+..+++|..+..+|..+..-
T Consensus 249 ~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a---p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 249 AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc---hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 1111223455555444457888999999999987763 2233344567999999999999999999999999888765
Q ss_pred hh-HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHH
Q 003146 547 VY-EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLV 625 (844)
Q Consensus 547 ~~-~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~ 625 (844)
.. .+| ...++.|++.+.++.. .+.. +...|+.-+. -..+++-.+..++.+++.+.... ...+.
T Consensus 326 idN~dI-----~~~ip~Lld~l~dp~~-~~~e-~~~~L~~ttF------V~~V~~psLalmvpiL~R~l~eR---st~~k 389 (569)
T KOG1242|consen 326 IDNPDI-----QKIIPTLLDALADPSC-YTPE-CLDSLGATTF------VAEVDAPSLALMVPILKRGLAER---STSIK 389 (569)
T ss_pred hccHHH-----HHHHHHHHHHhcCccc-chHH-HHHhhcceee------eeeecchhHHHHHHHHHHHHhhc---cchhh
Confidence 44 222 2256677777775431 1111 1111111100 00122334455566665442111 11355
Q ss_pred HHHHHHHHhccCCC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 003146 626 ESVAGILIRFTDPS-DKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNS 682 (844)
Q Consensus 626 e~a~~aL~~l~~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~ 682 (844)
..++.+..|++.-. |+.+..... ..++|-|-..+.+..|++|..++.||+.+-...
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 67777887777663 554332222 235666666777778999999999998776543
No 58
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.36 E-value=0.00039 Score=79.93 Aligned_cols=411 Identities=17% Similarity=0.182 Sum_probs=221.5
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCCHH-HHHHHHHHHHHccCC--ChhHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVE-EQREAVGLLLDLSDL--PAVWRR 302 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~A~~~L~~Ls~~--~~~~~~ 302 (844)
+.|++.+.|+. .-+|..|.+++..++...-.....-.-...++.+..++..... -+...+.++-.|.+. +.....
T Consensus 612 ~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~ 689 (1233)
T KOG1824|consen 612 TLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAE 689 (1233)
T ss_pred HHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 56777777754 6689999999998875432221111122356677777766433 233333333333221 111111
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHH-HH-HhhcCc
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATA-LS-RMELTD 380 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~-L~-~Ls~~~ 380 (844)
.. .-++..+..+++..|..+...|+..|..+.........-.....++.++.+++++--......+.. ++ -+..+.
T Consensus 690 ~~--e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~ 767 (1233)
T KOG1824|consen 690 LL--EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITK 767 (1233)
T ss_pred HH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcC
Confidence 11 123334555566678888899999999998766655555566789999999998754333222211 11 122222
Q ss_pred hhhhhhhhcCchHHHHHHhhcCCHH-----HHHHHHHHH----HHhhc-Cc-ccHHHHHHcCChHHHHHHhhccCCcchh
Q 003146 381 QSRASLGEDGAIEPLVRMFRVGKLE-----AKLSALNAL----QNLSL-LA-ENIQRLVISGIVSPLLQLLFSVTSVLMT 449 (844)
Q Consensus 381 ~~~~~i~~~g~i~~Lv~lL~~~~~~-----~~~~A~~aL----~nLs~-~~-~~~~~i~~~g~v~~Lv~lL~~~~~~~~~ 449 (844)
.. +-+ +..|+.++..+-++ ..+.|...+ ..|+. .+ .++. .+..|+.-+.++.. ...
T Consensus 768 ~~-----~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s------~a~kl~~~~~s~~s-~~~ 834 (1233)
T KOG1824|consen 768 EP-----DLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKS------LATKLIQDLQSPKS-SDS 834 (1233)
T ss_pred CC-----Ccc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchh------HHHHHHHHHhCCCC-chh
Confidence 11 012 45666666554321 223332222 22221 11 1111 22334444443332 234
Q ss_pred hHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC
Q 003146 450 LREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN 529 (844)
Q Consensus 450 l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 529 (844)
++.-|.-+|+.+..+.......+.-..+++-+++++.+++.+|..+|.+++.++- +. .+|-+++...+..
T Consensus 835 ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl-~~---------yLpfil~qi~sqp 904 (1233)
T KOG1824|consen 835 IKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL-PK---------YLPFILEQIESQP 904 (1233)
T ss_pred HHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch-Hh---------HHHHHHHHHhcch
Confidence 5566666677666554444445556678888999999999999999999987541 22 4555555554433
Q ss_pred HHHHHHHHHHHH-HhhhhhhHHHHHHhchhhHHHHHHHhcC---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHH
Q 003146 530 ANIRAAALNLVC-TLSKDVYEELAEQLGDKYLNILVDITLS---STSENEKAAAVGILSNLPVSNKKATELLKKTNLLPS 605 (844)
Q Consensus 530 ~~v~~~A~~~L~-~ls~~~~~~i~~~l~~~~l~~Lv~lL~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~ 605 (844)
.+ +.--...|. .+...... .+.+ .++.+-.+|.. ...+..|...+.+|+.|...+++ ..+|.
T Consensus 905 k~-QyLLLhSlkevi~~~svd----~~~~-~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe--------sLlpk 970 (1233)
T KOG1824|consen 905 KR-QYLLLHSLKEVIVSASVD----GLKP-YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE--------SLLPK 970 (1233)
T ss_pred Hh-HHHHHHHHHHHHHHhccc----hhhh-hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------HHHHH
Confidence 21 111111111 11111101 1111 12222222221 12334577778889988876764 45788
Q ss_pred HHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccc
Q 003146 606 LISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSL 685 (844)
Q Consensus 606 L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~ 685 (844)
|-..++++....+ -.++.+ ..|+-..+++.... .....|.-+..++++++..||+.|..++.....+.+++
T Consensus 971 L~~~~~S~a~~~r-------s~vvsa-vKfsisd~p~~id~-~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 971 LKLLLRSEASNTR-------SSVVSA-VKFSISDQPQPIDP-LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred HHHHhcCCCcchh-------hhhhhe-eeeeecCCCCccCH-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence 8888887764321 123333 23443333332211 22245667888999999999999999999999887774
Q ss_pred c
Q 003146 686 R 686 (844)
Q Consensus 686 ~ 686 (844)
.
T Consensus 1042 I 1042 (1233)
T KOG1824|consen 1042 I 1042 (1233)
T ss_pred H
Confidence 3
No 59
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.36 E-value=4.7e-05 Score=83.30 Aligned_cols=221 Identities=23% Similarity=0.263 Sum_probs=157.1
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHH
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEEL 551 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i 551 (844)
..++.+..++.+.++.+|..+...+..+... -+++.+..++.+.++.+|..|..+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-------------EAVPLLRELLSDEDPRVRDAAADALGELG------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-------------HHHHHHHHHhcCCCHHHHHHHHHHHHccC-------
Confidence 4677888888888888998888886665432 26899999999999999999988775442
Q ss_pred HHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCC-----CCCchhHHH
Q 003146 552 AEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITK-----THSTPWLVE 626 (844)
Q Consensus 552 ~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~-----~~~~~~l~e 626 (844)
.+..++.|+..+..+.+..++..++.+|+.+-. ...+..++..+.+..... ......++.
T Consensus 103 ----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 103 ----DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 122667788888876788899999999998844 334677777776654111 000001233
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcc
Q 003146 627 SVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEV 706 (844)
Q Consensus 627 ~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~ 706 (844)
.++.+|..+. ....++.+...+.+.+..+|..|+.+|+.+.....
T Consensus 168 ~a~~~l~~~~------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~----------------------- 212 (335)
T COG1413 168 AAAEALGELG------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENV----------------------- 212 (335)
T ss_pred HHHHHHHHcC------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchh-----------------------
Confidence 3444443332 23467889999999999999999999999885431
Q ss_pred cccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHH
Q 003146 707 HDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEK 786 (844)
Q Consensus 707 h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~ 786 (844)
.+...+...+.+.+..++..++.+|..+.... ++..+...+.+.+..++..
T Consensus 213 ----------------~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~-------------~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 213 ----------------EAADLLVKALSDESLEVRKAALLALGEIGDEE-------------AVDALAKALEDEDVILALL 263 (335)
T ss_pred ----------------hHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-------------hHHHHHHHHhccchHHHHH
Confidence 24588889999999999999999999887765 4666777776666666555
Q ss_pred HHHHH
Q 003146 787 ALWIL 791 (844)
Q Consensus 787 A~~~L 791 (844)
+...+
T Consensus 264 ~~~~~ 268 (335)
T COG1413 264 AAAAL 268 (335)
T ss_pred HHHHh
Confidence 54444
No 60
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.35 E-value=0.00016 Score=76.54 Aligned_cols=316 Identities=13% Similarity=0.126 Sum_probs=206.8
Q ss_pred CHHHHHHHhCCC-CchHHHHHHHHHHHhHhcChhhHHHHhc-----CC-cHHHHHHHhcCC-HHHHHHHHHHHHHccCCC
Q 003146 226 IIAVLLNRLGSS-KPYNRLIMIQILRNLASENADYKEKMAN-----VG-SLSALVKSLTRD-VEEQREAVGLLLDLSDLP 297 (844)
Q Consensus 226 ~~p~l~~lL~s~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~-----~g-~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~~~ 297 (844)
++..++.+++.. .++.....+..+-.+-+.+...-..+.. .. .-...+++|.++ .-......+.+..++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 455667776533 2333344444444443333222222211 12 256778888774 445555777777776643
Q ss_pred hhHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhcc--CCHHHHHHHHHHHH
Q 003146 298 AVWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKE--GSDMSKILMATALS 374 (844)
Q Consensus 298 ~~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~ 374 (844)
...-...+-.=....|-..+++ .+++...-|+.+|..+...++.|..++.+.++..++..+.+ .+-..+....-+++
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciW 225 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIW 225 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHH
Confidence 2221111000012233344444 77778888899999999999999999999999999999843 24567889999999
Q ss_pred HhhcCchhhhhhhhcCchHHHHHHhhcCC-HHHHHHHHHHHHHhhcCc-------ccHHHHHHcCChHHHHHHhhccCCc
Q 003146 375 RMELTDQSRASLGEDGAIEPLVRMFRVGK-LEAKLSALNALQNLSLLA-------ENIQRLVISGIVSPLLQLLFSVTSV 446 (844)
Q Consensus 375 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~-------~~~~~i~~~g~v~~Lv~lL~~~~~~ 446 (844)
-|+.++.....+...+.|+.|.+++++.. ..+-+-.+.++.|+.... +....|+..++.+ -++.|....-.
T Consensus 226 lLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k-~l~~L~~rkys 304 (442)
T KOG2759|consen 226 LLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLK-TLQSLEERKYS 304 (442)
T ss_pred HhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchH-HHHHHHhcCCC
Confidence 99999887787877899999999998743 466777889999999765 2334566666554 55555544322
Q ss_pred chhhHHHHHHHHHHHhcC-------h-------------------hhhcc----------cchHHHHHHhhccCC-hHHH
Q 003146 447 LMTLREPASAILARIAQS-------E-------------------SILVN----------KDVAQQMLSLLNLCS-PTIQ 489 (844)
Q Consensus 447 ~~~l~~~a~~~L~~l~~~-------~-------------------~~l~~----------~~~i~~Lv~lL~~~~-~~~~ 489 (844)
++.+.+..-.+-..|..+ + +-+++ -..+..|+.+|.+++ |.+-
T Consensus 305 DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL 384 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIIL 384 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCcee
Confidence 234443333332222211 1 01111 134778888888764 7777
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 490 YHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 490 ~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
.-|+.=+...-++. ++.+..+.+-||=+.+.+++.+++++||..|..++..|-
T Consensus 385 ~VAc~DIge~Vr~y--P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 385 CVACHDIGEYVRHY--PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred ehhhhhHHHHHHhC--chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 77777777777775 788899999999999999999999999999999887664
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.34 E-value=0.0012 Score=73.96 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=151.7
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH---HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI---QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-- 465 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~---~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-- 465 (844)
.+...+..|++.++.++..|+..+..|+.--.+| ..+-..|+| |.+.|....+ .+.-..+.+|+.+.+.-
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeyp---EvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYP---EVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccH---HHHHHHHHHHHHHHHhccc
Confidence 3455677888999999999999988887533333 233345554 6666665543 23344444554444331
Q ss_pred -h-hhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCCh-hHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 466 -S-ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSA-SNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCT 542 (844)
Q Consensus 466 -~-~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ 542 (844)
. .---.+.++.|.-+|++...+++++++..+..+|..++. ...|.-++ +---|+++|.+.+.++|++|...+..
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 0 001246789999999999999999999999999988631 11122221 23467888899999999999999988
Q ss_pred hhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHH---HHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCC
Q 003146 543 LSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAA---AVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTH 619 (844)
Q Consensus 543 ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~---a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~ 619 (844)
+++..+. .+.+..|++-|+.. +-..+.+ |.++++.-+. --.++|.|.+=-+.++.
T Consensus 952 IakaIGP-------qdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~----------pFtVLPalmneYrtPe~---- 1009 (1172)
T KOG0213|consen 952 IAKAIGP-------QDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCG----------PFTVLPALMNEYRTPEA---- 1009 (1172)
T ss_pred HHHhcCH-------HHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcC----------chhhhHHHHhhccCchh----
Confidence 8765431 11444455444321 1111111 2222222111 01234444443333432
Q ss_pred CchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCc
Q 003146 620 STPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSL 683 (844)
Q Consensus 620 ~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~ 683 (844)
.++...+.+++.+-.-.......- -.-+.|.|.+.|-+.++.-|..|+.++.+++.+.+
T Consensus 1010 ---nVQnGVLkalsf~FeyigemskdY--iyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1010 ---NVQNGVLKALSFMFEYIGEMSKDY--IYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred ---HHHHhHHHHHHHHHHHHHHHhhhH--HHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 245566666654432111100111 12356888888888899999999999999997644
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0018 Score=72.72 Aligned_cols=179 Identities=13% Similarity=0.172 Sum_probs=105.1
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhc-CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhc
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSL-LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILV 469 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~ 469 (844)
++|.|+.-|.++++.++-+|+..++.|+. +|.|.-.+ -|.+..+|.+.++ ..+......++++|+--++-+.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsN--NWmLIKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSN--NWVLIKLLKLFAALTPLEPRLG 254 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCC--CeehHHHHHHHhhccccCchhh
Confidence 44666666666666666667777776664 35443322 3556666655543 2344566666666665443322
Q ss_pred ccchHHHHHHhhccCCh-HHHHHHHHHHHH--hhcCC-ChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003146 470 NKDVAQQMLSLLNLCSP-TIQYHLLHALNS--IAAHS-SASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSK 545 (844)
Q Consensus 470 ~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~--L~~~~-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~ 545 (844)
...+++|.+++++++. ...+.|+.+... +.... ++....+. +++.|--++.+.++.++.-++-+++.+..
T Consensus 255 -KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL-----CvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 255 -KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL-----CVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred -hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-----HHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 2457777777766543 244555555433 22221 11111111 56777788888888888888888888877
Q ss_pred hhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 003146 546 DVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPV 588 (844)
Q Consensus 546 ~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 588 (844)
.++..+..+- ..+++.|. +.|+.++.-|.-.|..+..
T Consensus 329 tHp~~Vqa~k-----dlIlrcL~-DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 329 THPKAVQAHK-----DLILRCLD-DKDESIRLRALDLLYGMVS 365 (877)
T ss_pred hCHHHHHHhH-----HHHHHHhc-cCCchhHHHHHHHHHHHhh
Confidence 7776554332 33556665 4677777777777776644
No 63
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-05 Score=81.11 Aligned_cols=187 Identities=19% Similarity=0.160 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHH
Q 003146 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNIL 563 (844)
Q Consensus 484 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~L 563 (844)
.+++-++.|+.-|..++.+ -++...+...||..+++.++.+++..+|..|+++|..++.+.|..-...+..++++.|
T Consensus 95 ~~le~ke~ald~Le~lve~---iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVED---IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHh---hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4677888899999888877 5778888999999999999999999999999999999998887544444556699999
Q ss_pred HHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHH
Q 003146 564 VDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKL 643 (844)
Q Consensus 564 v~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~ 643 (844)
+..|..+++.+++..|..+++.+-.+++.....+...++...|...+.+++... .++..++..+..+.... ..-
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~-----~lkrK~~~Ll~~Ll~~~-~s~ 245 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSV-----KLKRKALFLLSLLLQED-KSD 245 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcch-----HHHHHHHHHHHHHHHhh-hhh
Confidence 999998888889999999999999989988999999999999999999865432 35667777777777642 222
Q ss_pred HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 003146 644 QQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLS 679 (844)
Q Consensus 644 ~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls 679 (844)
...+...+....++.+....+..++..+..++..+.
T Consensus 246 ~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 246 EDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 334556666677777777888888888888766554
No 64
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=0.00025 Score=82.96 Aligned_cols=542 Identities=13% Similarity=0.132 Sum_probs=287.8
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC--HHHHHHHHHHHHHccC-CChhHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD--VEEQREAVGLLLDLSD-LPAVWRR 302 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~A~~~L~~Ls~-~~~~~~~ 302 (844)
.+|.+-+.+ .++.++...+..-++.+... ...+ .+. +.+..-...+... ...|++++..+...+. .++....
T Consensus 122 lipf~~e~~-~~~dev~~~~a~~~~~~~~~-v~~~-~~~--~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~ 196 (759)
T KOG0211|consen 122 LIPFLTEAE-DDEDEVLLDLAEQLGTFLPD-VGGP-EYA--HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLR 196 (759)
T ss_pred hhhHHHHhc-cchhHHHHHHHHHhcccchh-ccch-hHH--HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 566666666 55556666666555555321 0111 000 0111122222222 2357777777776543 3322210
Q ss_pred HhhhhCcHHHHHHhhcCCCh-HHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCch
Q 003146 303 IGRIQGCIVMLVSMLSGNDP-VASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQ 381 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~-~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 381 (844)
...+ +|+..+...+. ..+..++++...+...... ..++...-+..-++-++..++++..++.-+++++..-.
T Consensus 197 ----~~lv-~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~ 269 (759)
T KOG0211|consen 197 ----EHLV-PLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE 269 (759)
T ss_pred ----HHHH-HHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH
Confidence 1122 33333333332 3345666666666532221 12222223333344455677888888888888876533
Q ss_pred hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 382 SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 382 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
. .....+.++.++++..+....+++.|..++.++...-..-.. +.....+.++....+.. ..++........-+
T Consensus 270 ~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~~~~~~l~~~~~d~~---~~v~~~~~~~~~~L 343 (759)
T KOG0211|consen 270 S--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVKSLTESLVQAVEDGS---WRVSYMVADKFSEL 343 (759)
T ss_pred H--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHhcChh---HHHHHHHhhhhhhH
Confidence 3 455678999999999998899999999888888753211111 11223455666655443 33444444443333
Q ss_pred hcC-hhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHH
Q 003146 462 AQS-ESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLV 540 (844)
Q Consensus 462 ~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L 540 (844)
... +.-......++....+++....+.+.....-...++.... .....-+.....++.+..+..+.+..++...+...
T Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~-~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 344 SSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN-ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC-cccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 221 0111122336677777777777777777666666665542 23334445556688888888899999988777766
Q ss_pred HHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCC
Q 003146 541 CTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHS 620 (844)
Q Consensus 541 ~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~ 620 (844)
..+..-.+.+ ..-...++.++..++ +..+.++......+..+-..+............+|.+..+-.+...
T Consensus 423 ~~~~p~~~k~---~ti~~llp~~~~~l~-de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~w----- 493 (759)
T KOG0211|consen 423 TGLSPILPKE---RTISELLPLLIGNLK-DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLW----- 493 (759)
T ss_pred cccCccCCcC---cCccccChhhhhhcc-hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhH-----
Confidence 5554332210 000112233333333 2444555444333333322122222333334444555554433321
Q ss_pred chhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCC
Q 003146 621 TPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSA 700 (844)
Q Consensus 621 ~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~ 700 (844)
.++......+-.++.... ..+.+...-+.+...+.+....++.+|+..+..+...-.. .|.
T Consensus 494 --Rvr~ail~~ip~la~q~~----~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~-------~w~------ 554 (759)
T KOG0211|consen 494 --RVRLAILEYIPQLALQLG----VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS-------EWA------ 554 (759)
T ss_pred --HHHHHHHHHHHHHHHhhh----hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc-------chh------
Confidence 122222222222221110 0111112222223333334456787887777766642110 011
Q ss_pred CCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCC
Q 003146 701 DAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGN 780 (844)
Q Consensus 701 ~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~ 780 (844)
....++.++....+++..+|...+.++..|+.-.. +.+....=++.+..+..++.
T Consensus 555 --------------------~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g-----~ei~~~~Llp~~~~l~~D~v 609 (759)
T KOG0211|consen 555 --------------------RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG-----QEITCEDLLPVFLDLVKDPV 609 (759)
T ss_pred --------------------HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc-----cHHHHHHHhHHHHHhccCCc
Confidence 12245666666666688999999999997775431 22223334777888889999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhhhcCCCCchHHHHHHHHHHhhhhcC
Q 003146 781 AKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQ 840 (844)
Q Consensus 781 ~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~~~~~ 840 (844)
+++|.+++..|.++.+.-.. ......-.+.++.+.++.|.++|..|..+++.+......
T Consensus 610 anVR~nvak~L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~ 668 (759)
T KOG0211|consen 610 ANVRINVAKHLPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLE 668 (759)
T ss_pred hhhhhhHHHHHHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 99999999999999765322 111112235777888899999999999998877654433
No 65
>PF05536 Neurochondrin: Neurochondrin
Probab=98.29 E-value=0.00052 Score=78.89 Aligned_cols=382 Identities=16% Similarity=0.101 Sum_probs=216.0
Q ss_pred cHHHHHHHhcCCHH-HHHHHHHHHHHccCCCh----hHHHHhhhhCcHHHHHHhhcC-------CChHHHHHHHHHHHHh
Q 003146 268 SLSALVKSLTRDVE-EQREAVGLLLDLSDLPA----VWRRIGRIQGCIVMLVSMLSG-------NDPVASHDAGKLLNAL 335 (844)
Q Consensus 268 ~i~~Lv~~L~~~~~-~~~~A~~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~s-------~d~~~~~~A~~~L~nL 335 (844)
.++.-+++|+...+ .|-.++..+.++.+..+ .++.|.+ +=+.+.|-+||++ +...-+..|+.+|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45666778877334 44456677777777543 3445665 5557888899976 2244567888999999
Q ss_pred ccCCcc--HHHHHHcCChHHHHHHhccCCH-HHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHH
Q 003146 336 SSNTQN--ALHMAEAGYFKPLVQYLKEGSD-MSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALN 412 (844)
Q Consensus 336 s~~~~~--~~~i~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 412 (844)
|..++. ..+| .+.||.|++.+.+++. ++...+..+|..++.+++++..+.+.|+++.|.+.+.+ .+..++.|+.
T Consensus 85 ~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 987664 3444 3579999999988877 78889999999999999999999999999999999987 6677899999
Q ss_pred HHHHhhcCcccHHHHHH----cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhh-----hcccch----HHHHHH
Q 003146 413 ALQNLSLLAENIQRLVI----SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESI-----LVNKDV----AQQMLS 479 (844)
Q Consensus 413 aL~nLs~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~-----l~~~~~----i~~Lv~ 479 (844)
+|.++....+....--. ..+++.+-..+....+ ..+-..+..|..+-...+. ..+... ...+..
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~---~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHG---EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 99998865331100000 1233444444443332 2456677777777555421 122222 334444
Q ss_pred hhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCC-----cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHH
Q 003146 480 LLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKENG-----AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAE 553 (844)
Q Consensus 480 lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g-----~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~ 553 (844)
++.+ ..+..|..++.+...|....+. .=.+.+.. ..-.++++. ..++|..--.+++............
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~~~G~---~wl~~~~~~~~~~F~~Llv~l~---~VEir~~L~~L~~~~~~~~~~~~~~ 312 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLDLLGP---EWLFADDKKSGKKFLLLLVNLA---CVEIRMSLEELLEQLNPEEYPEKQR 312 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCh---HhhcCCCCCCcccHHHHHHHHH---HHHHHHHhHHhhhcCCchhhHHHHH
Confidence 5544 4677777777777666544210 00111111 122222211 1122221111111100000000000
Q ss_pred Hh--chhhHHHHHHHhcCC----C---CHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchh-
Q 003146 554 QL--GDKYLNILVDITLSS----T---SENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPW- 623 (844)
Q Consensus 554 ~l--~~~~l~~Lv~lL~~~----~---~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~- 623 (844)
.+ .-..++..+..+..+ + +++.... ++..+ .+.+...+.+|++-.... ..++
T Consensus 313 ~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~k--------------l~~~l--~e~~~~vle~L~~~~d~~--~~d~~ 374 (543)
T PF05536_consen 313 LLASCFSILEHFIGYLVRSLEEESLDLDPDTLLK--------------LRTSL--SETFSAVLEYLRDVWDES--QKDPD 374 (543)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCHHHHHH--------------HHHHH--HHHHHHHHHHHHHhhhcc--ccchH
Confidence 00 011223333333221 1 1111111 11111 244556677776543211 1122
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCH----------HHHHHHHHHHHHHhhcC
Q 003146 624 LVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESV----------VAKSSASISLAQLSQNS 682 (844)
Q Consensus 624 l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----------~vk~~Aa~aL~~ls~~~ 682 (844)
+.-.++++|+.|-...+...++.+. |.+|.++++.+.+.. +..+--.-+|++++...
T Consensus 375 ~vlAsvR~L~~WLaEe~~~lr~~v~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~ 441 (543)
T PF05536_consen 375 FVLASVRVLGAWLAEETSALRKEVY--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE 441 (543)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHH--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH
Confidence 6778999999998865555666664 899999999976532 34555666777776543
No 66
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.29 E-value=0.00043 Score=75.95 Aligned_cols=256 Identities=16% Similarity=0.150 Sum_probs=156.1
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh----HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVY----EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKK 592 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~----~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 592 (844)
.+..++.+|++..+.+|..|+.+...|+.-.. ......++ ..|..-|. ...+++.....++++.+.....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg----~iLyE~lg-e~ypEvLgsil~Ai~~I~sv~~- 678 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG----NILYENLG-EDYPEVLGSILKAICSIYSVHR- 678 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh----HHHHHhcC-cccHHHHHHHHHHHHHHhhhhc-
Confidence 46677789999999999999998877754322 11111111 11333343 3566776666666665533110
Q ss_pred HHH-HHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC-----CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 003146 593 ATE-LLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS-----DKKLQQYSVQHGVIRLLVKLLSSESVV 666 (844)
Q Consensus 593 ~~~-~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~-----~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 666 (844)
.+. .=--.|++|.|..+|++.+. .+.++.+..+..++... ..+|.+... -|+++|.+-+-+
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~-------Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf------eLvd~Lks~nKe 745 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQ-------KVVANTIALVGTICMNSPEYIGVREWMRICF------ELVDSLKSWNKE 745 (975)
T ss_pred ccccCCchhhccccccHhhhhhhH-------HHhhhHHHHHHHHHhcCcccCCHHHHHHHHH------HHHHHHHHhhHH
Confidence 000 00125789999999988664 35556666666665432 223433222 378889999999
Q ss_pred HHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHH
Q 003146 667 AKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGA 746 (844)
Q Consensus 667 vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~A 746 (844)
+|+.|...++.++.-- --+.++..|+.-|...+..-|....-|
T Consensus 746 iRR~A~~tfG~Is~ai-------------------------------------GPqdvL~~LlnnLkvqeRq~Rvctsva 788 (975)
T COG5181 746 IRRNATETFGCISRAI-------------------------------------GPQDVLDILLNNLKVQERQQRVCTSVA 788 (975)
T ss_pred HHHhhhhhhhhHHhhc-------------------------------------CHHHHHHHHHhcchHHHHHhhhhhhhh
Confidence 9999999999888421 112344555555655554444444444
Q ss_pred HHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhh-hhhhHhhccccchhHHhhhhcCCCCchH
Q 003146 747 LASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRI-EEHRVKYGESAQVVLIDLAQNGDSRLKP 825 (844)
Q Consensus 747 L~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~-~~~~~~~~~~a~~~Lv~ll~~~~~~~~~ 825 (844)
++-.+.---+ ...+|.|..=.+.++.++|.-.+.++.-+|.. .+....|--...+-|-+.+-+.|+.-|+
T Consensus 789 I~iVae~cgp---------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRq 859 (975)
T COG5181 789 ISIVAEYCGP---------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQ 859 (975)
T ss_pred hhhhHhhcCc---------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHH
Confidence 4443322101 12355566555678888998888888877765 3333344333345666899999999999
Q ss_pred HHHHHHHHHhhh
Q 003146 826 AVAKLLAQLELL 837 (844)
Q Consensus 826 ~aa~~L~~l~~~ 837 (844)
.|+.+..||..-
T Consensus 860 ta~nvI~Hl~Ln 871 (975)
T COG5181 860 TAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHhcC
Confidence 999999998653
No 67
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00064 Score=76.90 Aligned_cols=429 Identities=15% Similarity=0.150 Sum_probs=234.3
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHc-cCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH
Q 003146 269 LSALVKSLTRDV-EEQREAVGLLLDL-SDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA 346 (844)
Q Consensus 269 i~~Lv~~L~~~~-~~~~~A~~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~ 346 (844)
-..|.++|.++. ..+..|.+-|..+ ++..+. ....|..|+-..+.|.+++...---|..-+....+-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 345788888743 4666777655544 444432 345677888888899999887655555555433332111
Q ss_pred HcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHH
Q 003146 347 EAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQ 425 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~ 425 (844)
-|..+-+-|++++...|..|.++|..+-.. +..+=.+-.+-+...+..+.+|+.|+.|+-.|=+- ++.+.
T Consensus 109 ---SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 ---SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred ---eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 355666778899999998888887764322 11111122233445678899999999999999764 55555
Q ss_pred HHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCCh
Q 003146 426 RLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSA 505 (844)
Q Consensus 426 ~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 505 (844)
++++ .+-.+|.+.++ .+.-.|+.+...+|-..--+.+ +-...|..++..-+...|-..+..|..-|++.=.
T Consensus 180 qL~e-----~I~~LLaD~sp---lVvgsAv~AF~evCPerldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 180 QLEE-----VIKKLLADRSP---LVVGSAVMAFEEVCPERLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLP 250 (968)
T ss_pred HHHH-----HHHHHhcCCCC---cchhHHHHHHHHhchhHHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCC
Confidence 5443 34445555543 2455666666666544311111 2346677777666666677777777666655310
Q ss_pred -hHHH-HHHHhCC------------------------cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhh
Q 003146 506 -SNVR-RKMKENG------------------------AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKY 559 (844)
Q Consensus 506 -~~~~-~~i~~~g------------------------~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~ 559 (844)
+... ....+.| .++..-.++.+.++.+..+++.+.+.++..... ...
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i 323 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKI 323 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHH
Confidence 0000 0000000 122223345566666666777777666532210 113
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC
Q 003146 560 LNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS 639 (844)
Q Consensus 560 l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~ 639 (844)
.++|+++|.++ .+++......+..++...+.+ +-|.+-.+.-.++ .+. .+.--=+..|.+++...
T Consensus 324 ~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~l--------F~P~lKsFfv~ss-Dp~----~vk~lKleiLs~La~es 388 (968)
T KOG1060|consen 324 AKALVRLLRSN--REVQYVVLQNIATISIKRPTL--------FEPHLKSFFVRSS-DPT----QVKILKLEILSNLANES 388 (968)
T ss_pred HHHHHHHHhcC--CcchhhhHHHHHHHHhcchhh--------hhhhhhceEeecC-CHH----HHHHHHHHHHHHHhhhc
Confidence 45566666532 234444444444443322221 0111111111111 000 11112223344444322
Q ss_pred CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHh
Q 003146 640 DKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCL 719 (844)
Q Consensus 640 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l 719 (844)
+-. .+++-|-..+++.+..+-..|..|++..+......
T Consensus 389 ni~--------~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv---------------------------------- 426 (968)
T KOG1060|consen 389 NIS--------EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV---------------------------------- 426 (968)
T ss_pred cHH--------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch----------------------------------
Confidence 211 12333555666776667777788888877654332
Q ss_pred hhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 003146 720 VKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLES-GNAKAQEKALWILERIF 795 (844)
Q Consensus 720 ~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~-~~~~~~~~A~~~L~~i~ 795 (844)
...++..|+++|++.|..|..+|+..+-.|.+....+. -+ -|..+.+++.+ .-+..|.-.+|+++.++
T Consensus 427 -~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-~~------ii~~La~lldti~vp~ARA~IiWLige~~ 495 (968)
T KOG1060|consen 427 -TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-LE------ILFQLARLLDTILVPAARAGIIWLIGEYC 495 (968)
T ss_pred -hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-HH------HHHHHHHHhhhhhhhhhhceeeeeehhhh
Confidence 23367999999999999999999999999998764221 11 25556666643 34455555677776554
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00013 Score=74.04 Aligned_cols=288 Identities=17% Similarity=0.181 Sum_probs=189.7
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHh--cCCcHHHHHHHhcCCHHHHHHHHHHHHHccCCChhHHHHhhh
Q 003146 229 VLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMA--NVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRI 306 (844)
Q Consensus 229 ~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~ 306 (844)
-++++|.+.++.++..|...|-.++.. ....+. +...++.+.+++..... .+.|+.+|.|++..+..+..+.+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~- 81 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQ- 81 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHH-
Confidence 367888888999999999888888643 111111 22356667777765333 56788999999999999999987
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH-------HcCChHHHHHHhccCCH-HHH-HHHHHHHHHhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA-------EAGYFKPLVQYLKEGSD-MSK-ILMATALSRME 377 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~-------~~g~i~~Lv~~L~~~~~-~~~-~~aa~~L~~Ls 377 (844)
. .+..++.++.++.....+.++..|.||+..+.....+. +.|.+.........+.. ... ...|-++.+|+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 88888888887766777788899999998776544332 13444444455554432 222 36778889999
Q ss_pred cCchhhhhhhhcCchH--HHHHHhhcCCHHH-HHHHHHHHHHhhcCcccHHHHHHc--CChHHHHHHhhccCCcchhhHH
Q 003146 378 LTDQSRASLGEDGAIE--PLVRMFRVGKLEA-KLSALNALQNLSLLAENIQRLVIS--GIVSPLLQLLFSVTSVLMTLRE 452 (844)
Q Consensus 378 ~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~-~~~A~~aL~nLs~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~l~~ 452 (844)
.....|..+.....+| .|+.+ .+.+..+ +...+++|.|.|-+..++..+++. ..+|.++.=+.+....+..
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE--- 236 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE--- 236 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH---
Confidence 9988888887755332 22222 2233344 455678999999998888888763 3445444333333221111
Q ss_pred HHHHHHHHHhcChhhhcccchHHHHHHhhc-----cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc
Q 003146 453 PASAILARIAQSESILVNKDVAQQMLSLLN-----LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME 527 (844)
Q Consensus 453 ~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~ 527 (844)
.. ..++.=++++. .++|.+|..-+.+|.-||.- ..-|+.+++.|+.+.+-.+=..
T Consensus 237 dm-----------------~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT---~~GRe~lR~kgvYpilRElhk~ 296 (353)
T KOG2973|consen 237 DM-----------------AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT---RAGREVLRSKGVYPILRELHKW 296 (353)
T ss_pred HH-----------------hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---hHhHHHHHhcCchHHHHHHhcC
Confidence 00 11222235553 36889999999999999986 5778888888887776665433
Q ss_pred -CCHHHHHHHHHHHHHhhhh
Q 003146 528 -TNANIRAAALNLVCTLSKD 546 (844)
Q Consensus 528 -~~~~v~~~A~~~L~~ls~~ 546 (844)
.++++++.+-.....+.+.
T Consensus 297 e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 297 EEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred CCcHHHHHHHHHHHHHHHhc
Confidence 4567887777777666553
No 69
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.26 E-value=0.0005 Score=75.20 Aligned_cols=250 Identities=21% Similarity=0.244 Sum_probs=173.7
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHH
Q 003146 349 GYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLV 428 (844)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~ 428 (844)
..++.+++.+.+.+..++..++..++.+ ....+++.|..++.+.++.++..|+.+|+++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 5788889999998888898888887664 33568899999999999999999999888775
Q ss_pred HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCCh------------HHHHHHHHHH
Q 003146 429 ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSP------------TIQYHLLHAL 496 (844)
Q Consensus 429 ~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~------------~~~~~a~~~L 496 (844)
....+++|+.++..+. ...++..++..|..+ .....+..++..+..... .+|..+..+|
T Consensus 103 ~~~a~~~li~~l~~d~--~~~vR~~aa~aL~~~-------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 103 DPEAVPPLVELLENDE--NEGVRAAAARALGKL-------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred ChhHHHHHHHHHHcCC--cHhHHHHHHHHHHhc-------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 2346889999998633 246889999999987 345567888888877552 2455555555
Q ss_pred HHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHH
Q 003146 497 NSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEK 576 (844)
Q Consensus 497 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~ 576 (844)
..+- +...++.+..++.+.+..+|..|...|..+..+. ......+...+. +.+..++
T Consensus 174 ~~~~-------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~-~~~~~vr 230 (335)
T COG1413 174 GELG-------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALS-DESLEVR 230 (335)
T ss_pred HHcC-------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhc-CCCHHHH
Confidence 4442 3347889999999999999999999997775442 112234455554 5778888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHH
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLL 656 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~L 656 (844)
..++.+|+.+.. ...++.+...+.+.+.. +...+..++..+ ......+.+
T Consensus 231 ~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~l 280 (335)
T COG1413 231 KAALLALGEIGD-----------EEAVDALAKALEDEDVI-------LALLAAAALGAL------------DLAEAALPL 280 (335)
T ss_pred HHHHHHhcccCc-----------chhHHHHHHHHhccchH-------HHHHHHHHhccc------------CchhhHHHH
Confidence 888888888855 33456677777665421 111122221100 011334566
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhh
Q 003146 657 VKLLSSESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 657 v~lL~~~~~~vk~~Aa~aL~~ls~ 680 (844)
...+.+....++..++.+++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 281 LLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HHHhhcchhhHHHHHHHHHHhhcc
Confidence 777777788888888888887764
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.0027 Score=69.40 Aligned_cols=419 Identities=12% Similarity=0.077 Sum_probs=234.8
Q ss_pred CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccC--CHHHHHHHHHHHHH-hhcCchhhhh-hhh--cCc-
Q 003146 319 GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEG--SDMSKILMATALSR-MELTDQSRAS-LGE--DGA- 391 (844)
Q Consensus 319 s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~-Ls~~~~~~~~-i~~--~g~- 391 (844)
++|+.++.+|-.-|.+|+.++= ...+..+++.|.+. .+..|..+.-+|-| |..++..+.. ..+ .|.
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF-------~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~ 88 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDF-------EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR 88 (858)
T ss_pred CCCCCccccHHHHHHHhccccH-------HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence 6888888888888888876431 11334455666554 35667667667765 3334332221 111 110
Q ss_pred ------h-HHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccC--CcchhhHHHHHHHHHHHh
Q 003146 392 ------I-EPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVT--SVLMTLREPASAILARIA 462 (844)
Q Consensus 392 ------i-~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~l~~~a~~~L~~l~ 462 (844)
+ .....-|.+..|+.-..|+.++..++... +-.|.+|-|+..|.... ..+...+.+++.++.+++
T Consensus 89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 0 11233445555666566666665555321 12567888887776432 234567889999999999
Q ss_pred cCh--hhhc-c-cchHHHHHH-hhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhC----CcHHHHHHHhccCCHHH
Q 003146 463 QSE--SILV-N-KDVAQQMLS-LLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKEN----GAIHLLLPFLMETNANI 532 (844)
Q Consensus 463 ~~~--~~l~-~-~~~i~~Lv~-lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~----g~i~~Lv~ll~~~~~~v 532 (844)
.+. +.+. . +..+..++. -++. ++..+|-.++.+|.+=|- .++..+..+ -.++..++.-+.++.++
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~-----fv~~nf~~E~erNy~mqvvceatq~~d~e~ 237 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM-----FVQGNFCYEEERNYFMQVVCEATQGNDEEL 237 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH-----HHHHhhcchhhhchhheeeehhccCCcHHH
Confidence 874 2222 2 222333332 3333 467799999999988331 222222222 25667777888888999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhchhhHHHHH-HHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHH--------------
Q 003146 533 RAAALNLVCTLSKDVYEELAEQLGDKYLNILV-DITLSSTSENEKAAAVGILSNLPVSNKKATELL-------------- 597 (844)
Q Consensus 533 ~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv-~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l-------------- 597 (844)
+.+|..||..+..-. ..+....-+..+-.|. +..+ +.++++...+...-+.+.....+....+
T Consensus 238 q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mk-s~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa 315 (858)
T COG5215 238 QHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMK-SQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFA 315 (858)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchH
Confidence 999999997664211 1111122222333333 3333 4555666555544433322111111100
Q ss_pred --HhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 003146 598 --KKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISL 675 (844)
Q Consensus 598 --~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL 675 (844)
.-++++|.|+++|...+..........-..|...|.-|+.... ..+.+. ...-.-+-+++++..-|..|++|+
T Consensus 316 ~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g----d~i~~p-Vl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 316 RAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG----DKIMRP-VLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh----hHhHHH-HHHHHHHhccCchhhhHHHHHHHh
Confidence 1135789999999763322211112222344444444443211 112221 233334556778888999999999
Q ss_pred HHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc
Q 003146 676 AQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET 755 (844)
Q Consensus 676 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~ 755 (844)
+..-.+..... ..-+-..++|.+...+.++---|+..++++++.+++.-
T Consensus 391 GSvm~gp~~~~------------------------------lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v- 439 (858)
T COG5215 391 GSVMHGPCEDC------------------------------LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV- 439 (858)
T ss_pred hhhhcCccHHH------------------------------HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-
Confidence 98765432211 01113457888888888888889999999999887642
Q ss_pred chhhhHHHHhcCChHHHHHHh---hcCCHHHHHHHHHHHHHHHhh
Q 003146 756 WESGSNYLAKLSGTQAIIKVL---ESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 756 ~~~~~~~i~~~g~i~~lv~ll---~~~~~~~~~~A~~~L~~i~~~ 797 (844)
+..|-..|.+++.+.-. -..+|.+..++.|..+++..+
T Consensus 440 ----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 440 ----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred ----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 23455566666655333 235778888999999888654
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.24 E-value=3.5e-05 Score=81.49 Aligned_cols=274 Identities=17% Similarity=0.170 Sum_probs=179.5
Q ss_pred HHHHHHHhCCcHHHHHHHhccCCHH--HHHHHHHHHHHhhhhhh-HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 003146 507 NVRRKMKENGAIHLLLPFLMETNAN--IRAAALNLVCTLSKDVY-EELAEQLGDKYLNILVDITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 507 ~~~~~i~~~g~i~~Lv~ll~~~~~~--v~~~A~~~L~~ls~~~~-~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L 583 (844)
..+..++..|+++.|+.++..++.+ +|..|.++|..+....+ +.+.. . ++..++.+-+....++.....+++|
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~-~---~~~~Il~lAK~~e~~e~aR~~~~il 246 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVAR-I---GLGVILNLAKEREPVELARSVAGIL 246 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhh-c---cchhhhhhhhhcCcHHHHHHHHHHH
Confidence 4466788899999999999998864 69999999977654333 22222 1 3444455444445567777889999
Q ss_pred hcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC
Q 003146 584 SNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE 663 (844)
Q Consensus 584 ~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 663 (844)
.++-.+..+..+.++..|++..++--.+..+ +.+..+++-+|.|++.-.....++.+++..+-..|.-+-.+.
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~-------P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk 319 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRTD-------PALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK 319 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeecccCC-------HHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch
Confidence 9999888889999999999999887775543 357889999999988776777788888888888888888888
Q ss_pred CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcc---cchHhhhcCCchHHHHhhcCCChhhH
Q 003146 664 SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVK---STFCLVKAGAVSPLIQVLEGKEREAD 740 (844)
Q Consensus 664 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~---~~~~l~~~~ai~~Lv~lL~~~~~~v~ 740 (844)
+...|..|+.|.+.+..+..--+.-++.+-..+ .+.+-.+|+.....+ .+..=....-++.|+-+|.+..-+.+
T Consensus 320 Del~R~~AClAV~vlat~KE~E~~VrkS~TlaL---VEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq 396 (832)
T KOG3678|consen 320 DELLRLHACLAVAVLATNKEVEREVRKSGTLAL---VEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQ 396 (832)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHhhccchhh---hhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhh
Confidence 888999999999999876543221111110000 000111111000000 00000122356778888887666666
Q ss_pred HHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 741 ETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 741 ~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
..++.-|+.=+.-...+...++..+.|+|+.|-++..+.++....-|-.+|.-|
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 655544432221112244567888999999999999887765555555555433
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.22 E-value=1.3e-05 Score=70.91 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=102.8
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHH
Q 003146 270 SALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAE 347 (844)
Q Consensus 270 ~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~ 347 (844)
..||.-... +.+.+++...-|.|.+-+|.+...+.+ ..++...+.-|..+|....+.+++.|+|||-++.|+..|.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 344444443 557788899999999999999999988 99999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-hhhhhhhh
Q 003146 348 AGYFKPLVQYLKEGSDMSKILMATALSRMELTD-QSRASLGE 388 (844)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~ 388 (844)
+++++.++..++++...+...++.++..|+..+ ..+..+..
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 999999999999998888888999999998765 55666655
No 73
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.22 E-value=0.00046 Score=73.17 Aligned_cols=319 Identities=13% Similarity=0.085 Sum_probs=209.3
Q ss_pred cHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCccHHHHH-------HcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc
Q 003146 309 CIVMLVSMLSGN-DPVASHDAGKLLNALSSNTQNALHMA-------EAGYFKPLVQYLKEGSDMSKILMATALSRMELTD 380 (844)
Q Consensus 309 ~i~~Lv~lL~s~-d~~~~~~A~~~L~nLs~~~~~~~~i~-------~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 380 (844)
.+.+++.+++.. .++....+...+-.+-..+..+..+. +.-.-.+.+.+|..++......+++++..++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 466677777643 34444455555555444444443332 1233667889999988877777888888887643
Q ss_pred hhhhhhhhcC-chHHHHHHhhc-CCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHH
Q 003146 381 QSRASLGEDG-AIEPLVRMFRV-GKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAIL 458 (844)
Q Consensus 381 ~~~~~i~~~g-~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L 458 (844)
..+....+.. -...|-..+.+ .+......|+++|..+...++.|..++.+.++..++..+. .+....+++-....++
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~-s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA-STKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh-ccCcchhHHHHHHHHH
Confidence 3322221111 11233444444 5567788899999999999999999999999999999986 3333567889999999
Q ss_pred HHHhcCh---hhhcccchHHHHHHhhccC-ChHHHHHHHHHHHHhhcCCChh----HHHHHHHhCCcHHHHHHHhcc--C
Q 003146 459 ARIAQSE---SILVNKDVAQQMLSLLNLC-SPTIQYHLLHALNSIAAHSSAS----NVRRKMKENGAIHLLLPFLME--T 528 (844)
Q Consensus 459 ~~l~~~~---~~l~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~----~~~~~i~~~g~i~~Lv~ll~~--~ 528 (844)
|.|+-++ +.+...+.|+.|.++++.. .+++-.-++.++.|++..++.. ++...+...++.+.+-.+... .
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys 304 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS 304 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC
Confidence 9999887 3456668899999999764 5678888999999999887432 333445555555554444432 2
Q ss_pred CHHHHHHHHHHHH-------Hhhh--------------hhh----HHHH----HHhc---hhhHHHHHHHhcCCCCHHHH
Q 003146 529 NANIRAAALNLVC-------TLSK--------------DVY----EELA----EQLG---DKYLNILVDITLSSTSENEK 576 (844)
Q Consensus 529 ~~~v~~~A~~~L~-------~ls~--------------~~~----~~i~----~~l~---~~~l~~Lv~lL~~~~~~~~~ 576 (844)
++++...--.+-. .|+. ++| +.+. ..+. ...+..|+.+|..+.|+...
T Consensus 305 DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL 384 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIIL 384 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCcee
Confidence 3344332222111 1111 111 0000 1111 22677889999988888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhc
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l 635 (844)
..||-=++......|.-+..+.+.|+=..+.+++..+++ .++.+|+.++..+
T Consensus 385 ~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~-------~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 385 CVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP-------EVRYHALLAVQKL 436 (442)
T ss_pred ehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc-------hHHHHHHHHHHHH
Confidence 888887888877788888889999999999999988775 3566777766543
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.19 E-value=0.0027 Score=73.06 Aligned_cols=410 Identities=16% Similarity=0.155 Sum_probs=227.2
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhh---HHHHhcCCcHHHHHHHhcC-------CH-HHHHHHHHHHHHcc
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADY---KEKMANVGSLSALVKSLTR-------DV-EEQREAVGLLLDLS 294 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~---~~~i~~~g~i~~Lv~~L~~-------~~-~~~~~A~~~L~~Ls 294 (844)
.+...+.+|++.+..-+..++..+.++....+.. +..+.++=+.+++-++|.. +. ..+..|+..|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4567788899888888899999999998765543 3457777778999999976 22 35667999999999
Q ss_pred CCChhHHHHhhhhCcHHHHHHhhcCCCh-HHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHH
Q 003146 295 DLPAVWRRIGRIQGCIVMLVSMLSGNDP-VASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATAL 373 (844)
Q Consensus 295 ~~~~~~~~i~~~~g~i~~Lv~lL~s~d~-~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L 373 (844)
..++....-- .-+.||.|++.+.+.+. .+...+..+|..++.+++++..+.+.|+++.|.+.+.+ .+.....+..+|
T Consensus 86 ~~~~~a~~~~-~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQ-MVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 9776542211 15589999999976665 89999999999999999999999999999999999988 344566788888
Q ss_pred HHhhcCchhhhhhhh----cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH--HHHHHcC----ChHHHHHHhhcc
Q 003146 374 SRMELTDQSRASLGE----DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI--QRLVISG----IVSPLLQLLFSV 443 (844)
Q Consensus 374 ~~Ls~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~--~~i~~~g----~v~~Lv~lL~~~ 443 (844)
.++......+..-.. ...++.+-..........+...+..|.++-...+.. ....... +..-+-.+|++.
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 877654221110011 123344444554444556677777777766543211 1111122 223345555554
Q ss_pred CCcchhhHHHHHHHHHHHhcCh--hh-hcccc-----hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHH-h
Q 003146 444 TSVLMTLREPASAILARIAQSE--SI-LVNKD-----VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK-E 514 (844)
Q Consensus 444 ~~~~~~l~~~a~~~L~~l~~~~--~~-l~~~~-----~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~-~ 514 (844)
.. ..-|..+..+.+.+...- +. +.... ..-.++++.. -++|. .+..|...-..+........+. -
T Consensus 244 ~~--~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~---VEir~-~L~~L~~~~~~~~~~~~~~~L~~c 317 (543)
T PF05536_consen 244 LT--PSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLAC---VEIRM-SLEELLEQLNPEEYPEKQRLLASC 317 (543)
T ss_pred CC--HHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHH---HHHHH-HhHHhhhcCCchhhHHHHHHHHHH
Confidence 32 334555555555554331 11 11111 2222222211 01111 0001111100000011111111 1
Q ss_pred CCcHHHHHHHhcc----CCHHHH-HHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCC-----CCHHHHHHHHHHHh
Q 003146 515 NGAIHLLLPFLME----TNANIR-AAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSS-----TSENEKAAAVGILS 584 (844)
Q Consensus 515 ~g~i~~Lv~ll~~----~~~~v~-~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~-----~~~~~~~~a~~~L~ 584 (844)
-+.+...+.++.. ++..+. ..-.++...+ . ..+...+.+|.+- .++....++.++|+
T Consensus 318 f~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l------------~-e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~ 384 (543)
T PF05536_consen 318 FSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSL------------S-ETFSAVLEYLRDVWDESQKDPDFVLASVRVLG 384 (543)
T ss_pred HHHHHHHHHHHHhccccccCCCCHHHHHHHHHHH------------H-HHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 1233333333322 111110 0001111111 1 1223333444321 12223445666665
Q ss_pred c-CCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCC---CchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHh
Q 003146 585 N-LPVSNKKATELLKKTNLLPSLISAATSSTITKTH---STPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLL 660 (844)
Q Consensus 585 ~-L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~---~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL 660 (844)
. |+......++.+ .|.+|.++.+.+.+...... ..-......+.+|++++. +++-++.+...|+...|.+.+
T Consensus 385 ~WLaEe~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~--e~~gr~~l~~~~g~~~l~~~l 460 (543)
T PF05536_consen 385 AWLAEETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA--EEEGRKILLSNGGWKLLCDDL 460 (543)
T ss_pred HHHHhChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc--cHHHHHHHHhCCcHHHHHHHH
Confidence 3 445333455655 38889999999865432110 022456788899999997 555578888899988777654
No 75
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0012 Score=67.50 Aligned_cols=327 Identities=18% Similarity=0.212 Sum_probs=212.7
Q ss_pred HcCCChHHHHHHHHHHHHHHhcCCcC----hHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCC
Q 003146 192 LKHGDDKNLKFALLELRELISAKTVD----SEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVG 267 (844)
Q Consensus 192 L~~~~~~~~~~a~~~l~~L~~~~~~~----~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g 267 (844)
|...+.....-++..+..+.+|.+.+ -..+.+.+..|.++.-+..+|.++-..+...++.++ ..+..-+.+...+
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria-lfpaaleaiFeSe 169 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAALEAIFESE 169 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHhcccc
Confidence 33445545555667788888887744 234456778999999998888888888999999886 4545555555544
Q ss_pred cHHHH--HHHhcC-CHHHHHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccH
Q 003146 268 SLSAL--VKSLTR-DVEEQREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNA 342 (844)
Q Consensus 268 ~i~~L--v~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~ 342 (844)
..+.+ .++-.. +.-.|-.....+.++.. ++.....+-. .|.+..|..=++. +|.-+..++......|...+..+
T Consensus 170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgr 248 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGR 248 (524)
T ss_pred cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhh
Confidence 43332 222222 22345566666766654 4555555555 8888888877765 78888889999999999888889
Q ss_pred HHHHHcCChHHHHHHhccC--CHHHHHHHH----HHHHHhhcCchhhhhhhh--cCchHHHHHHhhcCCHHHHHHHHHHH
Q 003146 343 LHMAEAGYFKPLVQYLKEG--SDMSKILMA----TALSRMELTDQSRASLGE--DGAIEPLVRMFRVGKLEAKLSALNAL 414 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa----~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL 414 (844)
.-+.+.|.++.+.....-. ++..+..+. ..+++.+.-+-.-..+.+ .-+|..-..+....++...+.|+.++
T Consensus 249 eflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDal 328 (524)
T KOG4413|consen 249 EFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDAL 328 (524)
T ss_pred hhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHH
Confidence 9999999999998888643 233333333 334444433222222222 23455566777888999999999999
Q ss_pred HHhhcCcccHHHHHHcCC--hHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-----hh----------------hcc-
Q 003146 415 QNLSLLAENIQRLVISGI--VSPLLQLLFSVTSVLMTLREPASAILARIAQSE-----SI----------------LVN- 470 (844)
Q Consensus 415 ~nLs~~~~~~~~i~~~g~--v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-----~~----------------l~~- 470 (844)
+.|.++.+..+.+.+.|- ...++.-..+.+.. .-++.+..+|.+++..- .+ ..+
T Consensus 329 GilGSnteGadlllkTgppaaehllarafdqnah--akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqs 406 (524)
T KOG4413|consen 329 GILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH--AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQS 406 (524)
T ss_pred HhccCCcchhHHHhccCChHHHHHHHHHhccccc--chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhc
Confidence 999999988887776653 33333333333221 23477888888887641 00 000
Q ss_pred --cchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHH
Q 003146 471 --KDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPF 524 (844)
Q Consensus 471 --~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~l 524 (844)
-+-...+..+++.+.|+++..+.+++..+...+ =.....+..++.+..++..
T Consensus 407 tkldPleLFlgilqQpfpEihcAalktfTAiaaqP--WalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 407 TKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP--WALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred cCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc--HHHHHHhcCccceeeeccc
Confidence 022445556677789999999999999998774 3344455566666655543
No 76
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00089 Score=77.45 Aligned_cols=362 Identities=18% Similarity=0.200 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHhHhcChhhHHHH----hcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHH
Q 003146 241 NRLIMIQILRNLASENADYKEKM----ANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLV 314 (844)
Q Consensus 241 ~~~~a~~~L~~L~~~~~~~~~~i----~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 314 (844)
-...++.+|.|++..+++-...+ .--|-.+.+...|.. +...+..|+..+..+....+.-..+.. .|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHHHH
Confidence 34567889999998887543222 234667777777766 445888899888888887777777776 88999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcCc--hhhhhhhhcCc
Q 003146 315 SMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEG-SDMSKILMATALSRMELTD--QSRASLGEDGA 391 (844)
Q Consensus 315 ~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~ 391 (844)
.+|+| -|..++.+..+|+.|+++++.....++.|++..+..++... ++..|..+|..|+.|..+. ..|..|.=-..
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 99865 47788899999999999998877777889999998888665 4677778889999987654 22333221122
Q ss_pred hH-HHHHHhhcCCHHHHHHHHHHHHHhhcCcccHH--HHH--HcCChHHHHHHhhcc-CCc---chhhHHHHHH------
Q 003146 392 IE-PLVRMFRVGKLEAKLSALNALQNLSLLAENIQ--RLV--ISGIVSPLLQLLFSV-TSV---LMTLREPASA------ 456 (844)
Q Consensus 392 i~-~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~--~i~--~~g~v~~Lv~lL~~~-~~~---~~~l~~~a~~------ 456 (844)
+| .+++.++++. ++|+.++-.-..+|+-.. .+. -+|.|...+.-+... .++ ...+-+..+.
T Consensus 1899 LP~~f~d~~RD~P----EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSP----EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred chHHHHHHHhcCH----HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 22 3455555532 566666666666655211 111 133344433222211 111 0011122211
Q ss_pred -------HHHHHhcChh-hhcc-----cchHHHHHHhhccCChH--HHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHH
Q 003146 457 -------ILARIAQSES-ILVN-----KDVAQQMLSLLNLCSPT--IQYHLLHALNSIAAHSSASNVRRKMKENGAIHLL 521 (844)
Q Consensus 457 -------~L~~l~~~~~-~l~~-----~~~i~~Lv~lL~~~~~~--~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~L 521 (844)
.+.....++. .+.+ .+.+..+.+++...+|+ .-+-...++..|-+.. +...+.+..-|.+|.+
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~h--P~LADqip~LGylPK~ 2052 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHH--PNLADQLPSLGYLPKF 2052 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhC--cchhhhCCCccchHHH
Confidence 0111111111 0111 24466777777776654 3344455566665554 5667778888999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCC-HHHHHHHHh
Q 003146 522 LPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVGILSNLPVSN-KKATELLKK 599 (844)
Q Consensus 522 v~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~l~~ 599 (844)
+..+...+..+-..|.+.|..|+.+.- ..+.+. -..+..++..++. .+.....|+.+|..+...+ .++......
T Consensus 2053 ~~Am~~~n~s~P~SaiRVlH~Lsen~~--C~~AMA~l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK 2128 (2235)
T KOG1789|consen 2053 CTAMCLQNTSAPRSAIRVLHELSENQF--CCDAMAQLPCIDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLK 2128 (2235)
T ss_pred HHHHHhcCCcCcHHHHHHHHHHhhccH--HHHHHhccccchhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 999998888888889999988876433 122221 1244456665553 2234446677777664422 234455567
Q ss_pred CCChHHHHHHhhcCC
Q 003146 600 TNLLPSLISAATSST 614 (844)
Q Consensus 600 ~~~v~~L~~ll~~~~ 614 (844)
.|.+|.|+++|....
T Consensus 2129 ~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2129 CGLVPYLLQLLDSST 2143 (2235)
T ss_pred cCcHHHHHHHhcccc
Confidence 899999999997643
No 77
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.09 E-value=0.00021 Score=75.88 Aligned_cols=274 Identities=17% Similarity=0.158 Sum_probs=185.5
Q ss_pred HHHhcCCcHHHHHHHhcC-CH--HHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 003146 261 EKMANVGSLSALVKSLTR-DV--EEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLS-GNDPVASHDAGKLLNALS 336 (844)
Q Consensus 261 ~~i~~~g~i~~Lv~~L~~-~~--~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs 336 (844)
+.+...|+++.|++++.. +. .+|.+|.+.|-++. ..++++.+.. -| ...++.+-+ .+.++.+...+++|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 456778999999999988 33 35788888877643 3456666665 44 444444444 356778888899999998
Q ss_pred cCC-ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC--chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHH
Q 003146 337 SNT-QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT--DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNA 413 (844)
Q Consensus 337 ~~~-~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a 413 (844)
.+. +....+++.|++..++-..+..++..-..+|-+|+|.+.. .+.+..+.+..+-+-|.-+..+.+.-.+..|+.|
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 754 4578888999999999999999998888999999998874 4778888887777777777777777889999999
Q ss_pred HHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHH
Q 003146 414 LQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLL 493 (844)
Q Consensus 414 L~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~ 493 (844)
..-|+++.+.-..+-++|-+...-.++.+.++. .....+-. .++ -...+.++.|+.+|.+.--+ ..++
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~--~FARD~hd----~aQ----G~~~d~LqRLvPlLdS~R~E--Aq~i 398 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPG--RFARDAHD----YAQ----GRGPDDLQRLVPLLDSNRLE--AQCI 398 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcc--hhhhhhhh----hhc----cCChHHHHHhhhhhhcchhh--hhhh
Confidence 999999888777777777654333444444321 11111110 111 12235588899998743323 3344
Q ss_pred HHHHHhhcCCC---hhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 494 HALNSIAAHSS---ASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 494 ~~L~~L~~~~~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
+++.- |.... ...--+.+.+-|+|+.|-++..+++.-....|..+|..+....+..
T Consensus 399 ~AF~l-~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~ 457 (832)
T KOG3678|consen 399 GAFYL-CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYK 457 (832)
T ss_pred HHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChh
Confidence 44432 22100 0111234567799999999988777666667777887776555433
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.09 E-value=1.3e-05 Score=68.61 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=71.8
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHh
Q 003146 653 IRLLVKLL-SSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV 731 (844)
Q Consensus 653 i~~Lv~lL-~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~l 731 (844)
||.|++.| +++++.+|..|+.+|+++.. ..+++.|+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------------------------------~~~~~~L~~~ 39 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------------------------------------PEAIPALIEL 39 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------------------------------HHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------------------------------HhHHHHHHHH
Confidence 68899988 78899999999999996542 2367999999
Q ss_pred hcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhc-CCHHHHHHHHHHHH
Q 003146 732 LEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLES-GNAKAQEKALWILE 792 (844)
Q Consensus 732 L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~-~~~~~~~~A~~~L~ 792 (844)
+.++++.||.+|+.+|+.+..+. +++.|.+++.+ .+..+|..|..+|.
T Consensus 40 l~d~~~~vr~~a~~aL~~i~~~~-------------~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 40 LKDEDPMVRRAAARALGRIGDPE-------------AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTSSSHHHHHHHHHHHHCCHHHH-------------THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCHH-------------HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 99999999999999999986543 68899998855 56677898988773
No 79
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.07 E-value=0.0014 Score=71.64 Aligned_cols=305 Identities=18% Similarity=0.122 Sum_probs=189.5
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC---HHHHHHHHHHHHHccCCChhHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD---VEEQREAVGLLLDLSDLPAVWRR 302 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~---~~~~~~A~~~L~~Ls~~~~~~~~ 302 (844)
..+.+..++-+++..+|-.+.++++.++. +...-..+.+.+.-..++..|..+ ..+|.+|.+.++.+...+.....
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 34444444444458999999999999985 445556677777777888888773 35899999999988665433333
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchh
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQS 382 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~ 382 (844)
+ ..|.+..++.+..+++...+.-|..+|..++..+. ..+++.||+..|++.+.+|..+.....+.++..+-..+..
T Consensus 105 ~--~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 105 I--PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred C--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 3 27888899999999888999999999999986432 5667899999999999988766777788888888888888
Q ss_pred hhhhhhcCchHHHHHHhhcC-------CH--HHHHHHHHHHHHhhcCcccHHHHH--HcCChHHHHHHhhccCCcchhhH
Q 003146 383 RASLGEDGAIEPLVRMFRVG-------KL--EAKLSALNALQNLSLLAENIQRLV--ISGIVSPLLQLLFSVTSVLMTLR 451 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~-------~~--~~~~~A~~aL~nLs~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~~~~l~ 451 (844)
|..+...--++.++.-+.+. +. ..-..+..++..+-..-..--.+. +..++..|+..|..++ ..++
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~---~~ir 257 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN---PEIR 257 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC---HHHH
Confidence 88776645556665555433 11 122334444444332211111111 1245777888887765 3477
Q ss_pred HHHHHHHHHHhcChh--h---------hcccchHHHHHHhh---ccCC---hHHHHHHHHHHHHhhcCCChhHHHHHHHh
Q 003146 452 EPASAILARIAQSES--I---------LVNKDVAQQMLSLL---NLCS---PTIQYHLLHALNSIAAHSSASNVRRKMKE 514 (844)
Q Consensus 452 ~~a~~~L~~l~~~~~--~---------l~~~~~i~~Lv~lL---~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 514 (844)
+....+|..+-.-+. . ....+-...-..+- ..+. |..-..- .++..+- ..-.-..+.+
T Consensus 258 ~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~----~~l~~~y-~aLll~ili~ 332 (371)
T PF14664_consen 258 KAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKR----PNLVNHY-LALLLAILIE 332 (371)
T ss_pred HHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccc----ccHHHHH-HHHHHHHHHH
Confidence 888888777654321 0 00001000000000 0000 0000000 0000000 0122234558
Q ss_pred CCcHHHHHHHhccC-CHHHHHHHHHHHHHh
Q 003146 515 NGAIHLLLPFLMET-NANIRAAALNLVCTL 543 (844)
Q Consensus 515 ~g~i~~Lv~ll~~~-~~~v~~~A~~~L~~l 543 (844)
.|.++.|+++..+. ++.+..+|.-+|..+
T Consensus 333 ~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 333 AGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred cChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 89999999999988 778888888888655
No 80
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0011 Score=76.81 Aligned_cols=323 Identities=17% Similarity=0.228 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhcc-CCccH----HHHHHcCChHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHH
Q 003146 324 ASHDAGKLLNALSS-NTQNA----LHMAEAGYFKPLVQYLKE-GSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVR 397 (844)
Q Consensus 324 ~~~~A~~~L~nLs~-~~~~~----~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 397 (844)
-.+.+..+|.||-. +++-. ....--|.++.+..+|+. +++.++..|...+..+..+.++-..+...|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34577899999975 44211 122225788888888875 4567888899999888888888888999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----h-------
Q 003146 398 MFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----S------- 466 (844)
Q Consensus 398 lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~------- 466 (844)
+|.+ -|..++.++..|+.|+++++......+.|++..+.+++...++ .+.+..++..|+.+..++ .
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~--~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNS--DQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCc--HHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 9975 6788999999999999999988888899998888888877664 457788999999998774 1
Q ss_pred ----hhcc--cchHHHHHHhhccC--Ch------HHHHHHHHHHHHhhcC--------CC--------------------
Q 003146 467 ----ILVN--KDVAQQMLSLLNLC--SP------TIQYHLLHALNSIAAH--------SS-------------------- 504 (844)
Q Consensus 467 ----~l~~--~~~i~~Lv~lL~~~--~~------~~~~~a~~~L~~L~~~--------~~-------------------- 504 (844)
++.+ .+.-...++++..+ +| ..+......+..+... +.
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 1110 01124445555432 22 2233333333332210 00
Q ss_pred --hhHHHHHHHhCC------------cHHHHHHHhccCCHH-----HHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHH
Q 003146 505 --ASNVRRKMKENG------------AIHLLLPFLMETNAN-----IRAAALNLVCTLSKDVYEELAEQLG-DKYLNILV 564 (844)
Q Consensus 505 --~~~~~~~i~~~g------------~i~~Lv~ll~~~~~~-----v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv 564 (844)
..-+|..+.+.+ .++.+.+++...+++ .-..|.- .|.+..+. .++++. -+.++.++
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V---~L~r~hP~-LADqip~LGylPK~~ 2053 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFV---ELVRHHPN-LADQLPSLGYLPKFC 2053 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHH---HHHHhCcc-hhhhCCCccchHHHH
Confidence 011122222222 234455555554442 2222222 22233332 233332 33667777
Q ss_pred HHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHH
Q 003146 565 DITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQ 644 (844)
Q Consensus 565 ~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~ 644 (844)
......++ ..-..+...|-.|+. +..+.+++.+...+..++..+.... ....-|+.+|.++-.....+..
T Consensus 2054 ~Am~~~n~-s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~--------~~~GLA~EalkR~~~r~~~eLV 2123 (2235)
T KOG1789|consen 2054 TAMCLQNT-SAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQP--------SLMGLAAEALKRLMKRNTGELV 2123 (2235)
T ss_pred HHHHhcCC-cCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcc--------hHHHHHHHHHHHHHHHhHHHHH
Confidence 65543222 122456777888877 6677888888888888888886533 2344777888877765555666
Q ss_pred HHHHHcCCHHHHHHHhccC
Q 003146 645 QYSVQHGVIRLLVKLLSSE 663 (844)
Q Consensus 645 ~~i~~~g~i~~Lv~lL~~~ 663 (844)
.+..+.|.+|.|.++|+..
T Consensus 2124 AQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2124 AQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccCcHHHHHHHhccc
Confidence 6788999999999999653
No 81
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.03 E-value=0.0007 Score=76.22 Aligned_cols=268 Identities=19% Similarity=0.166 Sum_probs=180.4
Q ss_pred HHHHHHccCCChhHHHHhhhhCcHHHHHHhh----------cCCChHHHHHHHHHHHHhccC-CccHHHHHHcCChHHHH
Q 003146 287 VGLLLDLSDLPAVWRRIGRIQGCIVMLVSML----------SGNDPVASHDAGKLLNALSSN-TQNALHMAEAGYFKPLV 355 (844)
Q Consensus 287 ~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL----------~s~d~~~~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv 355 (844)
+..|+-|++++.....+.. ..++..|..+- .++++.+...|..+|.|+-.. +..|....+.|+.+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4566667777776666665 66666777655 246788999999999999875 44587788999999999
Q ss_pred HHhccC-----CHHHHHHHHHHHHHhhcC-chhhhhhhh-cCchHHHHHHhhc---------C--------CHHHHHHHH
Q 003146 356 QYLKEG-----SDMSKILMATALSRMELT-DQSRASLGE-DGAIEPLVRMFRV---------G--------KLEAKLSAL 411 (844)
Q Consensus 356 ~~L~~~-----~~~~~~~aa~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~---------~--------~~~~~~~A~ 411 (844)
+.|+.. +.+......++|+-++.. .+.+..+.+ .+++..++..|.. . +...-..++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999987 677888899999988874 456655554 6788887776642 0 123355678
Q ss_pred HHHHHhhcCcccHHHHHHcCChHHHHHHhhcc------CCcchhhHHHHHHHHHHHhcCh-h--------------hhcc
Q 003146 412 NALQNLSLLAENIQRLVISGIVSPLLQLLFSV------TSVLMTLREPASAILARIAQSE-S--------------ILVN 470 (844)
Q Consensus 412 ~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~------~~~~~~l~~~a~~~L~~l~~~~-~--------------~l~~ 470 (844)
+.++|+..+......-...+.++.++.++..- ..........+..+|.|+--.. . -...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999987643222212344566666665433 1122334566777777762111 0 0123
Q ss_pred cchHHHHHHhhcc-----CC---hHHHHHHHHHHHHhhcCCChhHHHHHHHh----------------CCcHHHHHHHhc
Q 003146 471 KDVAQQMLSLLNL-----CS---PTIQYHLLHALNSIAAHSSASNVRRKMKE----------------NGAIHLLLPFLM 526 (844)
Q Consensus 471 ~~~i~~Lv~lL~~-----~~---~~~~~~a~~~L~~L~~~~~~~~~~~~i~~----------------~g~i~~Lv~ll~ 526 (844)
...+..|+.+|.. .. .+.-...+.+|..++... ..+|+.++. ...-..|++++.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 3457788887753 11 234556777788888775 566666653 235679999999
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHHHHhch
Q 003146 527 ETNANIRAAALNLVCTLSKDVYEELAEQLGD 557 (844)
Q Consensus 527 ~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~ 557 (844)
+..+.++..++.+|+.|+......+....+.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d~~~~v~~~Gy 349 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKEDASRFVKYVGY 349 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhhHHHHHHHcCc
Confidence 9999999999999999987666655555543
No 82
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00092 Score=68.01 Aligned_cols=251 Identities=18% Similarity=0.150 Sum_probs=157.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH-HcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhc
Q 003146 311 VMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA-EAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGED 389 (844)
Q Consensus 311 ~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 389 (844)
..++.++.+.+|.++..|+..+.+|+.. ..+.-.. +...++.+.+++....+ ...|+.+|.|++.....+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4588899999999999999999888765 2222222 24467778888877655 557999999999999888888776
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH--c----CChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 390 GAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI--S----GIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 390 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~--~----g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
.+..++.++-++....-...+..|.||+..++....+.. . .++..++....+.+.....--...+.+++||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 777888888776555667778899999998775544432 1 334445544443332111123678888999988
Q ss_pred Ch---hhhcccch--HHHHHHhhccCChH-HHHHHHHHHHHhhcCCChhHHHHHHHhCC--cHHHHH-------------
Q 003146 464 SE---SILVNKDV--AQQMLSLLNLCSPT-IQYHLLHALNSIAAHSSASNVRRKMKENG--AIHLLL------------- 522 (844)
Q Consensus 464 ~~---~~l~~~~~--i~~Lv~lL~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~i~~~g--~i~~Lv------------- 522 (844)
.+ ..+..... ++.+..+-. .+.. -|...+++|.|.|... .+...+...+ .++.++
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~---~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA---KLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc---hhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 75 23333221 223333333 3334 4567889999999873 4444444322 222221
Q ss_pred --------HHhc-----cCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCC
Q 003146 523 --------PFLM-----ETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSST 571 (844)
Q Consensus 523 --------~ll~-----~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~ 571 (844)
+++- .+++.+|..-..+|..|+.... =+++++..+.-++++-+....
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--GRe~lR~kgvYpilRElhk~e 297 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--GREVLRSKGVYPILRELHKWE 297 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--hHHHHHhcCchHHHHHHhcCC
Confidence 2222 3456788888888877754322 124445555556666665433
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00091 Score=73.09 Aligned_cols=347 Identities=16% Similarity=0.176 Sum_probs=207.4
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD--QSRA 384 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~ 384 (844)
.+.+|+.+..+++.|..++..|+..|.|++.--+......-...+..+.++..+.+..++ .++..|-.+-..- +...
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccccc
Confidence 778999999999999999999999999998533322222222344455555444444444 5666665554321 1111
Q ss_pred hhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH--cCChHHHHHHhhccCCcchhhHHHHH----HHH
Q 003146 385 SLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI--SGIVSPLLQLLFSVTSVLMTLREPAS----AIL 458 (844)
Q Consensus 385 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~l~~~a~----~~L 458 (844)
.+.=.+.||.|-.-+..-++..|..-+.-|..|-+-|+- .|+. ....+-|+..|.+.++ .++..+- ..|
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~s~---eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDSSD---EVRTLTDTLLSEFL 236 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCCcH---HHHHHHHHHHHHHH
Confidence 222234455555555556888888888888888766652 2222 2344556666666553 3443333 346
Q ss_pred HHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-HHHHHHH
Q 003146 459 ARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-NIRAAAL 537 (844)
Q Consensus 459 ~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~v~~~A~ 537 (844)
..+.+.+..+.....++.++.-+.++.|.+|..|+.-+..+-.-++.. -...-.|.+..++.++.+..+ .++..|.
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~---~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD---LLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc---hhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 666666666666778899999999999999998887776665554321 122345667777777777666 3555554
Q ss_pred HHHHHhhh-hhhHHHHHHhchh-hHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCC
Q 003146 538 NLVCTLSK-DVYEELAEQLGDK-YLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTI 615 (844)
Q Consensus 538 ~~L~~ls~-~~~~~i~~~l~~~-~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~ 615 (844)
..-..+.. ...+...+.+.-+ .+..|.+.+. ++..+.+.++..-+..|-...+. +-........+.|+.-|.+++.
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~-~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS-DDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchh
Confidence 43211211 1111111112222 4455556665 46678888887777766443332 3333445677778777766542
Q ss_pred CCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHh---ccCCHHHHHHHHHHHHHHh
Q 003146 616 TKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLL---SSESVVAKSSASISLAQLS 679 (844)
Q Consensus 616 ~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~vk~~Aa~aL~~ls 679 (844)
.+...++..+.+++...+.- +.++-+..+| ..+.-..+.++...+.+++
T Consensus 392 -------~vvl~~L~lla~i~~s~~~~--------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 392 -------EVVLLALSLLASICSSSNSP--------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred -------HHHHHHHHHHHHHhcCcccc--------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 67889999999998763321 3344444444 4555556777777777776
No 84
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.003 Score=70.56 Aligned_cols=316 Identities=17% Similarity=0.111 Sum_probs=185.4
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHH-HHHHHHHccCC-ChhHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQRE-AVGLLLDLSDL-PAVWRR 302 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~-A~~~L~~Ls~~-~~~~~~ 302 (844)
..+.+.+++++.....+..+...+..+..++ ....+.+.+-+..+-+...+ .+..+++ +.-..-..+.+ ..
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~---- 208 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP---- 208 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC----
Confidence 4556677777666667777777777665332 12344455556666666654 2222222 11111111111 10
Q ss_pred HhhhhCcHHHHHHhhc---CCChHHHHHHHHHHHHhcc--CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 303 IGRIQGCIVMLVSMLS---GNDPVASHDAGKLLNALSS--NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRME 377 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~---s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (844)
.. +.+.+|.|..+|. +..+.++..|..+...+-. ...... -.+++++.-+.+..+..+..++..|+.++
T Consensus 209 ~~-EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 209 PF-EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CC-CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 3566666666653 5567777666555543321 111111 13445555555556677888999999998
Q ss_pred cCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHH
Q 003146 378 LTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAI 457 (844)
Q Consensus 378 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~ 457 (844)
..........-+..||.+.+.|-+.++++++.+..+|.++++--+|.. | .-.+|.|++.+.+++.. + .++..
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~---~-~e~~~- 354 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCY---T-PECLD- 354 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccc---h-HHHHH-
Confidence 887777777778999999999999999999999999999998766644 1 12478888888766521 1 23332
Q ss_pred HHHHhcCh-hhhcccchHHHHHHhhcc----CChHHHHHHHHHHHHhhcCC-ChhHHHHHHHhCCcHHHHHHHhccCCHH
Q 003146 458 LARIAQSE-SILVNKDVAQQMLSLLNL----CSPTIQYHLLHALNSIAAHS-SASNVRRKMKENGAIHLLLPFLMETNAN 531 (844)
Q Consensus 458 L~~l~~~~-~~l~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 531 (844)
.|.... -....+-.+..++.+++. .+...+..++.++.|+|+-- +..+....+ ...+|.|-..+.+..|+
T Consensus 355 --~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 355 --SLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPE 430 (569)
T ss_pred --hhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChh
Confidence 232222 011222345555555544 45667889999999999764 122222222 12455666666677899
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcC
Q 003146 532 IRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLS 569 (844)
Q Consensus 532 v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~ 569 (844)
+|.-++++|..+.+..+..- -.+.++.+...+..
T Consensus 431 vR~vaarAL~~l~e~~g~~~----f~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 431 VRAVAARALGALLERLGEVS----FDDLIPELSETLTS 464 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhc----ccccccHHHHhhcc
Confidence 99999999977765544221 13344555555543
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0075 Score=68.01 Aligned_cols=412 Identities=15% Similarity=0.166 Sum_probs=230.6
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRRI 303 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i 303 (844)
..+-++.+|+++.+.+|..|+.+|..+..+.++.-. -+++.|+..|.+ |+.++..|+..+++|++. |.++-.+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 356678889999999999999999888766655422 257889999987 678999999999999874 6665433
Q ss_pred hhhhCcHHHHHHhhc-CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHH-HHHHHHHHHH--HhhcC
Q 003146 304 GRIQGCIVMLVSMLS-GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDM-SKILMATALS--RMELT 379 (844)
Q Consensus 304 ~~~~g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~-~~~~aa~~L~--~Ls~~ 379 (844)
-|.+..++. +.+..+....+....+|+-.+. .+ ....+++|.+++.+.... .-..+..++- +++..
T Consensus 220 ------AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RL-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 220 ------APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RL-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ------cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hh-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 467777774 4555666666777777775433 11 124688999999877543 3345555543 33332
Q ss_pred -chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHH
Q 003146 380 -DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAI 457 (844)
Q Consensus 380 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~ 457 (844)
+++-..+ .-++..|-.++.+.++..|.-++-|++.+... |.....- -..++..|.+.+ +.++-.|+..
T Consensus 290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD---~SIRlrALdL 359 (877)
T KOG1059|consen 290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKD---ESIRLRALDL 359 (877)
T ss_pred CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCC---chhHHHHHHH
Confidence 1111111 13566777788899999999999999998853 3322211 123566666554 4578899999
Q ss_pred HHHHhcChhhhcccchHHHHHHhhccCC-hHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-HHHHH
Q 003146 458 LARIAQSESILVNKDVAQQMLSLLNLCS-PTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-NIRAA 535 (844)
Q Consensus 458 L~~l~~~~~~l~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~v~~~ 535 (844)
|..++....+. ..+..|+..+...+ ...|...+.-+..+|+.+ .|.-..--+=.+..|+++.+-+.. .....
T Consensus 360 l~gmVskkNl~---eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s---nY~~ItdFEWYlsVlveLa~l~~~~~G~~I 433 (877)
T KOG1059|consen 360 LYGMVSKKNLM---EIVKTLMKHVEKAEGTNYRDELLTRIISICSQS---NYQYITDFEWYLSVLVELARLEGTRHGSLI 433 (877)
T ss_pred HHHHhhhhhHH---HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHHHhccccchhhHH
Confidence 99886543211 12444444443333 367777777788888873 333222122234556665543332 22222
Q ss_pred HHHHHHHhhhhhhHHHHHHhchhhHHHHHH--HhcCC-----CCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHH
Q 003146 536 ALNLVCTLSKDVYEELAEQLGDKYLNILVD--ITLSS-----TSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLIS 608 (844)
Q Consensus 536 A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~--lL~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ 608 (844)
|-.++ .++-..+ .++ ......+..|+. ++..+ .-.++..+|+++++..+..- .+.-..|-.
T Consensus 434 ~eQi~-Dv~iRV~-~iR-~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v---------en~~~~lea 501 (877)
T KOG1059|consen 434 AEQII-DVAIRVP-SIR-PFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV---------ENPNDTLEA 501 (877)
T ss_pred HHHHH-HHheech-hhh-HhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh---------hCHHHHHHH
Confidence 22222 2211111 010 000112222222 11111 12356678888888774411 112223333
Q ss_pred HhhcCC-CCCCCCchhHHHHHHHHHHhccCCCCHHHHHH-HH--HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 003146 609 AATSST-ITKTHSTPWLVESVAGILIRFTDPSDKKLQQY-SV--QHGVIRLLVKLLSSESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 609 ll~~~~-~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~-i~--~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~ 680 (844)
+++... .-+.....-...++....++|+...++.+... +. ..-++.-|-++..+.+.++|++|-.++.-+..
T Consensus 502 mlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~~ 577 (877)
T KOG1059|consen 502 MLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIRL 577 (877)
T ss_pred HhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHH
Confidence 343321 01111112245577778888877644432111 00 11122333344456778999998777665543
No 86
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00094 Score=73.00 Aligned_cols=307 Identities=20% Similarity=0.205 Sum_probs=190.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChH-HHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHH
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSE-WINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKM 263 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~-~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i 263 (844)
+-.....+....+..+..+.+-+-++.+|-+..+. .|.-.+.+|.+-+.+..-++.+|.--+.-|..|=..- . .+.+
T Consensus 126 iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~-~~m~ 203 (675)
T KOG0212|consen 126 IFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-D-LEMI 203 (675)
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-c-HHHH
Confidence 34445555555555555666666666666655443 5555567787777777778888887777776662211 1 1111
Q ss_pred h-cCCcHHHHHHHhcCCH-HHHHHHH----HHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 003146 264 A-NVGSLSALVKSLTRDV-EEQREAV----GLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS 337 (844)
Q Consensus 264 ~-~~g~i~~Lv~~L~~~~-~~~~~A~----~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~ 337 (844)
. -..-.+-|.++|++++ ++|..+- ..|.++...|..- +....++.|+.-+.++++.+|..|..-+.....
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 1 1224566788888854 5554322 3455554444332 225578899999999999999998777766655
Q ss_pred CCccHHHHHHcCChHHHHHHhccCCHH-HHHHHHH---HHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHH
Q 003146 338 NTQNALHMAEAGYFKPLVQYLKEGSDM-SKILMAT---ALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNA 413 (844)
Q Consensus 338 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~-~~~~aa~---~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a 413 (844)
-........-+|.+..++..+.+..+. .+..+.. .|..+......+..+.-...|..|.+.+.+...+.|-.++.-
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~W 359 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNW 359 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 444333444567777888888776654 3332221 233333333333333324567888888888888999999988
Q ss_pred HHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhh---ccCChHHHH
Q 003146 414 LQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLL---NLCSPTIQY 490 (844)
Q Consensus 414 L~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL---~~~~~~~~~ 490 (844)
+..|-....+.-........+.|+.-|.+.++ .+...++..+++++.++... +..+.+.++| ....--...
T Consensus 360 i~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s~~~~---~~~~fl~sLL~~f~e~~~~l~~ 433 (675)
T KOG0212|consen 360 IILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSSSNSP---NLRKFLLSLLEMFKEDTKLLEV 433 (675)
T ss_pred HHHHHhhCcchhhhhccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcCcccc---cHHHHHHHHHHHHhhhhHHHHh
Confidence 88887666655544556778888888877664 47789999999999987433 3344444444 333333455
Q ss_pred HHHHHHHHhhcCC
Q 003146 491 HLLHALNSIAAHS 503 (844)
Q Consensus 491 ~a~~~L~~L~~~~ 503 (844)
.+.-++..||.--
T Consensus 434 Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 434 RGNLIIRQLCLLL 446 (675)
T ss_pred hhhHHHHHHHHHh
Confidence 5666666776553
No 87
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.012 Score=67.05 Aligned_cols=390 Identities=15% Similarity=0.144 Sum_probs=220.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcC
Q 003146 311 VMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDG 390 (844)
Q Consensus 311 ~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 390 (844)
.-|..||.|........|+.-+..+-...++ -...++.+|+...+.+.+++...--.|...+..+.+-.. -
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----L 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----L 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----e
Confidence 3577888887777776776655555433333 134688899999999999987665555555544332222 2
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhc-cCCcchhhHHHHHHHHHHHhcChhhhc
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFS-VTSVLMTLREPASAILARIAQSESILV 469 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~l~~~a~~~L~~l~~~~~~l~ 469 (844)
.|..+-+-|+++++.+|..|+++|..+-. .+ +.|..+-.++. ..+.+..+|..|+.++-.|-.-+.--.
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRv------p~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRV------PM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 46778888999999999988888765521 11 12222222222 123346788888888887755432111
Q ss_pred ccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh-
Q 003146 470 NKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY- 548 (844)
Q Consensus 470 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~- 548 (844)
...+..+-.||.+.+|.+.-.|+.++-.+|-+. -..+ ++-...|.+++-+-+.=-|.-....|..-+++.-
T Consensus 179 -~qL~e~I~~LLaD~splVvgsAv~AF~evCPer-----ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 179 -DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPER-----LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLP 250 (968)
T ss_pred -HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhH-----HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCC
Confidence 134555666788899999999999999998542 2222 2234555565555444333334444333332210
Q ss_pred -HHHHH-----------------Hh-c----hhhHHHHHH----HhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCC
Q 003146 549 -EELAE-----------------QL-G----DKYLNILVD----ITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTN 601 (844)
Q Consensus 549 -~~i~~-----------------~l-~----~~~l~~Lv~----lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~ 601 (844)
....+ .. . ..-+..|++ +|. +.++.+..+++++...++..+. -..
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~-S~n~sVVmA~aql~y~lAP~~~-------~~~ 322 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ-SRNPSVVMAVAQLFYHLAPKNQ-------VTK 322 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh-cCCcHHHHHHHhHHHhhCCHHH-------HHH
Confidence 00000 00 0 001222222 222 5677888888888888866331 133
Q ss_pred ChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHh-ccCCH-HHHHHHHHHHHHHh
Q 003146 602 LLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLL-SSESV-VAKSSASISLAQLS 679 (844)
Q Consensus 602 ~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~-~vk~~Aa~aL~~ls 679 (844)
++++|+.+|++... .+.-.+..+..++.. ++ .-.-|.+-.+. .+.++ .++..=...|.+|.
T Consensus 323 i~kaLvrLLrs~~~--------vqyvvL~nIa~~s~~-~~--------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 323 IAKALVRLLRSNRE--------VQYVVLQNIATISIK-RP--------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred HHHHHHHHHhcCCc--------chhhhHHHHHHHHhc-ch--------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence 47788888877652 222333333323221 11 11224444443 33443 46666666677776
Q ss_pred hcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc-chh
Q 003146 680 QNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET-WES 758 (844)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~-~~~ 758 (844)
..+.. ...++.|-....+.|.++..+|..||+..+.... |..
T Consensus 386 ~esni-------------------------------------~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~ 428 (968)
T KOG1060|consen 386 NESNI-------------------------------------SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTD 428 (968)
T ss_pred hhccH-------------------------------------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhh
Confidence 43211 1134666677777777888888888887775431 211
Q ss_pred hhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 003146 759 GSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 759 ~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~ 797 (844)
..+.-|+.++++.++.+-..|+-.+.+++..
T Consensus 429 --------tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 429 --------TCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred --------HHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 1244567777777777777777666666543
No 88
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.85 E-value=0.00013 Score=64.81 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=98.4
Q ss_pred HcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHH
Q 003146 347 EAGYFKPLVQYLKEG-SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQ 425 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~ 425 (844)
..++++.||.-.... +.+.++...+-|.|++.++.|-..+.+..++..++.-|...+...++.++..|+|+|.++.|..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 346778888766654 6778889999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 426 RLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 426 ~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
.|.+++++|.++..+.++. ......++..+..|+-.+
T Consensus 94 ~I~ea~g~plii~~lssp~---e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPP---EITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeecCCCh---HHHHHHHHHHHHHhcCcc
Confidence 9999999998887776664 345567777777776654
No 89
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00025 Score=78.67 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=164.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHH--
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEEL-- 551 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i-- 551 (844)
...+..+....++.+|.+|+..|..|.... ...+. .....+.++.+....||..|.++++....-.+...
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 333666677788999999999999987632 11111 35677889999999999999999988776553111
Q ss_pred ---HHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHH
Q 003146 552 ---AEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESV 628 (844)
Q Consensus 552 ---~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a 628 (844)
...+...++..+.+.+. +.+..++..|+.+|+.+..-..+. +..-.-+.+..-++......++ . ..
T Consensus 272 e~~e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee~----i~QTLdKKlms~lRRkr~ahkr--p----k~ 340 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEEI----IQQTLDKKLMSRLRRKRTAHKR--P----KA 340 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHh-cCceeeeehHHHHhchHHHhHHHH----HHHHHHHHHhhhhhhhhhcccc--h----HH
Confidence 11223335666666666 366677778888888774322222 2111112222222111101100 0 11
Q ss_pred HHHHHhccCCC----------CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCC
Q 003146 629 AGILIRFTDPS----------DKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPP 698 (844)
Q Consensus 629 ~~aL~~l~~~~----------~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 698 (844)
...=+.|+... +.+--..++..|+=..+|.-|++.--+||++|..+++.|+.+++.
T Consensus 341 l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-------------- 406 (823)
T KOG2259|consen 341 LYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-------------- 406 (823)
T ss_pred HHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC--------------
Confidence 11111122110 000112456778888899999999999999999999999987766
Q ss_pred CCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhc
Q 003146 699 SADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLES 778 (844)
Q Consensus 699 ~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~ 778 (844)
|+ ..++..|+..+.++...||..|+.+|.-++..-.. ...-++.+.+.|++
T Consensus 407 ------------------FA---~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i--------~eeql~~il~~L~D 457 (823)
T KOG2259|consen 407 ------------------FA---VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI--------REEQLRQILESLED 457 (823)
T ss_pred ------------------cH---HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee--------cHHHHHHHHHHHHh
Confidence 32 34789999999999999999999999988866432 11236667788888
Q ss_pred CCHHHHHHHHHHHHH
Q 003146 779 GNAKAQEKALWILER 793 (844)
Q Consensus 779 ~~~~~~~~A~~~L~~ 793 (844)
.++++|+....+|.+
T Consensus 458 ~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 458 RSVDVREALRELLKN 472 (823)
T ss_pred cCHHHHHHHHHHHHh
Confidence 888888887777654
No 90
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.78 E-value=3.6e-05 Score=55.09 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=37.3
Q ss_pred chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 003146 380 DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 380 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
++++..+.+.|++|+|+.+|+++++.+++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5778889999999999999999999999999999999973
No 91
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=5.2e-05 Score=64.83 Aligned_cols=86 Identities=27% Similarity=0.341 Sum_probs=69.4
Q ss_pred chHHHHhh-cCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHh
Q 003146 725 VSPLIQVL-EGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVK 803 (844)
Q Consensus 725 i~~Lv~lL-~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~ 803 (844)
|+.|++.| .++++.+|..|+.+|+++.... .++.|+++++++++.+|..|+++|+++-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~-------------~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPE-------------AIPALIELLKDEDPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHH-------------HHHHHHHHHTSSSHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHh-------------HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 57899999 8999999999999999775443 5889999999999999999999998762
Q ss_pred hccccchhHHhhhhcCCC-CchHHHHHHHH
Q 003146 804 YGESAQVVLIDLAQNGDS-RLKPAVAKLLA 832 (844)
Q Consensus 804 ~~~~a~~~Lv~ll~~~~~-~~~~~aa~~L~ 832 (844)
...+...|.+++++++. .+|..|..+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12344688998887654 45888888875
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.69 E-value=8.7e-05 Score=53.08 Aligned_cols=39 Identities=31% Similarity=0.316 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 003146 641 KKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLS 679 (844)
Q Consensus 641 ~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls 679 (844)
++.+..+.+.|++|.|+++|+++++.+++.|+++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 455678999999999999999999999999999999997
No 93
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.15 Score=56.44 Aligned_cols=537 Identities=15% Similarity=0.078 Sum_probs=269.2
Q ss_pred HHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHH----HHhcC--CHHHHHHHHHHHHHccCCChhHHHHh
Q 003146 231 LNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALV----KSLTR--DVEEQREAVGLLLDLSDLPAVWRRIG 304 (844)
Q Consensus 231 ~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv----~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~ 304 (844)
.+.|+++.+.....|...+..++.-. ...|..+.|. +.... ....+.+++..+...+.+.+....+.
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~ 172 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ 172 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence 34466766777777777777665321 1223334444 33333 23467788999998887755433333
Q ss_pred hhhCcH-HHHHH-hhcC-CChHHHHHHHHHHHH-hccCCccHHHHHHcCC-hHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 003146 305 RIQGCI-VMLVS-MLSG-NDPVASHDAGKLLNA-LSSNTQNALHMAEAGY-FKPLVQYLKEGSDMSKILMATALSRMELT 379 (844)
Q Consensus 305 ~~~g~i-~~Lv~-lL~s-~d~~~~~~A~~~L~n-Ls~~~~~~~~i~~~g~-i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (844)
. .+.| -.++. -++. .+..++..|..+|.+ |-+-..|-..--+.++ ++..++.-+..+.+++..+..+|..+..-
T Consensus 173 ~-sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 173 M-SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred H-hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 3 4443 33333 2333 456677788888887 3322111111111122 22334555556677787787888876553
Q ss_pred c-hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-----------cc----cHH--HHHHcCChHHHHHHhh
Q 003146 380 D-QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-----------AE----NIQ--RLVISGIVSPLLQLLF 441 (844)
Q Consensus 380 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-----------~~----~~~--~i~~~g~v~~Lv~lL~ 441 (844)
. ..-..+.+.-.-......+++.+..+...|+.--..+|.. |+ |.. +..-++++|.|+.+|.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~ 331 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE 331 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence 2 2222333322223345566788888888777654444421 11 111 1112457899999997
Q ss_pred ccCC----cchhhHHHHHHHHHHHhcCh-hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCC
Q 003146 442 SVTS----VLMTLREPASAILARIAQSE-SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENG 516 (844)
Q Consensus 442 ~~~~----~~~~l~~~a~~~L~~l~~~~-~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g 516 (844)
..+. +....-..|..+|--.++.. ..+.+ .++..+-.-+++.++.-|+.++-++.++-..+. +..+.. .-+.
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~-~~~lT~-~V~q 408 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPC-EDCLTK-IVPQ 408 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCcc-HHHHHh-hHHh
Confidence 6321 22333345555555554432 11111 122233334567888999999999999876652 333333 3455
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhc--CCCCHHHHHHHHHHHhcCCCCCHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITL--SSTSENEKAAAVGILSNLPVSNKKAT 594 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~--~~~~~~~~~~a~~~L~~L~~~~~~~~ 594 (844)
++|.+...+.++.--++..++|++..++.+.+..+... +++...+..+. -.+.+....+.++...||..+-++..
T Consensus 409 alp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~---~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~ 485 (858)
T COG5215 409 ALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC---GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAV 485 (858)
T ss_pred hhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc---ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhh
Confidence 78888888887777899999999999887655433211 12222221111 12344555666777777754333322
Q ss_pred HH---HHhCCChHHHHHHhhcCCCCCCCCchhHHH---HHHHHHHhccCCCCHHHHHHHH------HcCCHHHHHHHhcc
Q 003146 595 EL---LKKTNLLPSLISAATSSTITKTHSTPWLVE---SVAGILIRFTDPSDKKLQQYSV------QHGVIRLLVKLLSS 662 (844)
Q Consensus 595 ~~---l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e---~a~~aL~~l~~~~~~~~~~~i~------~~g~i~~Lv~lL~~ 662 (844)
.. +. ....+.+++-|-.+...... ....+- .+++.|..++...-.+...-+. -...|..+.+++..
T Consensus 486 ~~~~S~l-~~fY~ai~~~Lv~~t~~~~N-e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~ 563 (858)
T COG5215 486 REVESFL-AKFYLAILNALVKGTELALN-ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILAT 563 (858)
T ss_pred ccccchh-HHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 11 11 12334444433222110000 011222 3444444444321111110000 01233444444433
Q ss_pred CC----HHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChh
Q 003146 663 ES----VVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKERE 738 (844)
Q Consensus 663 ~~----~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~ 738 (844)
.+ .+++.+-...|..+-...+. ++ .-++...+..++++|++.++.
T Consensus 564 eD~~~~~elqSN~~~vl~aiir~~~~---------------------------~i----e~v~D~lm~Lf~r~les~~~t 612 (858)
T COG5215 564 EDQLLVEELQSNYIGVLEAIIRTRRR---------------------------DI----EDVEDQLMELFIRILESTKPT 612 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---------------------------Cc----ccHHHHHHHHHHHHHhccCCc
Confidence 32 22333333333322211110 00 111333568889999877654
Q ss_pred h----HHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhh-hhhhHhhccccchhHH
Q 003146 739 A----DETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRI-EEHRVKYGESAQVVLI 813 (844)
Q Consensus 739 v----~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~-~~~~~~~~~~a~~~Lv 813 (844)
+ ...|+.||.+-..+. +++++.. -+|-+.+-|...+..+-..|...++.+.+. ++.-..|....-..|+
T Consensus 613 ~~~~dV~~aIsal~~sl~e~-Fe~y~~~-----fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~Lv 686 (858)
T COG5215 613 TAFGDVYTAISALSTSLEER-FEQYASK-----FIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLV 686 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHHHHhh-----hhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3 333455555433322 2333322 367777777666777777888888887654 2223344444445777
Q ss_pred hhhhcCC
Q 003146 814 DLAQNGD 820 (844)
Q Consensus 814 ~ll~~~~ 820 (844)
+-+++..
T Consensus 687 Q~lss~~ 693 (858)
T COG5215 687 QCLSSEA 693 (858)
T ss_pred HHhcChh
Confidence 7766543
No 94
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.00052 Score=79.74 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhc
Q 003146 533 RAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATS 612 (844)
Q Consensus 533 ~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~ 612 (844)
|..|+.+|..+-.-.+-.+.-.+..+..+-.+++|.+ .-.+.+-.-+-+-+.+-.-++.++..|+.+++-..++..+.+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS-~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS-SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc-chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 4456666655544344444445666677888888885 334444434444444444478889999999999999988877
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHhhcCccccccccc
Q 003146 613 STITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE-SVVAKSSASISLAQLSQNSLSLRKSKIS 691 (844)
Q Consensus 613 ~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~ 691 (844)
+..-+ .+-+.-++-+|.-++.. -+.-|+...+.+.+.+-...|+++ .+..|...+.||+.|-.+-..-+
T Consensus 566 ~~~~~----~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Ar----- 635 (1387)
T KOG1517|consen 566 SQAIP----PEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEAR----- 635 (1387)
T ss_pred cCCCC----HHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhh-----
Confidence 32111 13344677777777764 344466777888999888999886 68999999999999998766544
Q ss_pred cceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccc
Q 003146 692 KWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE 754 (844)
Q Consensus 692 ~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~ 754 (844)
|. =+..+|.+.|+.+|.++.++||.+|+.||+++..++
T Consensus 636 -w~------------------------G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 636 -WS------------------------GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred -hc------------------------cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 22 235678899999999999999999999999999865
No 95
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.17 Score=57.39 Aligned_cols=282 Identities=18% Similarity=0.207 Sum_probs=161.4
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC--HH-HHHH-HHHHHHHccCCChhHHHHh
Q 003146 229 VLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD--VE-EQRE-AVGLLLDLSDLPAVWRRIG 304 (844)
Q Consensus 229 ~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~-~~~~-A~~~L~~Ls~~~~~~~~i~ 304 (844)
.+..-|.|.|+....-|+.++.++.. -+..+.+.. .++ ++|.++ .+ +++. |+..|+.+-++|+..
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~---- 183 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---- 183 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc----
Confidence 34445667778788888888888742 233444332 344 555552 22 4444 555555554445432
Q ss_pred hhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-Cc-cHHHHHHcCChHHHHHHhcc-----------------CCHHH
Q 003146 305 RIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQ-NALHMAEAGYFKPLVQYLKE-----------------GSDMS 365 (844)
Q Consensus 305 ~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~-~~~~i~~~g~i~~Lv~~L~~-----------------~~~~~ 365 (844)
...+....++.+|.+.+..+...+...+.-|+.. ++ .+ +++++-+..|.. +.+..
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk------~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK------TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh------hhHHHHHHHHHHHHhhcccchhhceeecCCChHH
Confidence 2245678889999888877777777777777653 22 22 222222222211 34566
Q ss_pred HHHHHHHHHHhhcCc--hhhhhhhhcCchHHHHHHhhcCCH--HH-HHHHH----HHHHHhhcCc-ccHHHHHHcCChHH
Q 003146 366 KILMATALSRMELTD--QSRASLGEDGAIEPLVRMFRVGKL--EA-KLSAL----NALQNLSLLA-ENIQRLVISGIVSP 435 (844)
Q Consensus 366 ~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~--~~-~~~A~----~aL~nLs~~~-~~~~~i~~~g~v~~ 435 (844)
+....++|.+.-..+ ..|..+. .++..++...+.+.. .+ +..|- --..+|+.+- +....+.+ ++..
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~ 333 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQ 333 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHH
Confidence 667777777764322 2333332 233333433332111 11 12222 2223555543 33333433 4667
Q ss_pred HHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhc-cCChHHHHHHHHHHHHhhcCCChhHHHHH
Q 003146 436 LLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLN-LCSPTIQYHLLHALNSIAAHSSASNVRRK 511 (844)
Q Consensus 436 Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 511 (844)
|-++|..... .+|--++..++.|+.++ +++... ...++..|+ ..+..+|..|+..|+.+|..+.+ +.
T Consensus 334 Lg~fls~rE~---NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na----k~ 404 (938)
T KOG1077|consen 334 LGQFLSHRET---NIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA----KQ 404 (938)
T ss_pred HHHHhhcccc---cchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH----HH
Confidence 8888876653 47888999999998875 233222 567777787 46778999999999999976422 22
Q ss_pred HHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003146 512 MKENGAIHLLLPFLMETNANIRAAALNLVCTLSK 545 (844)
Q Consensus 512 i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~ 545 (844)
++.-+++.|.+.+..+|+.-.--+..|++
T Consensus 405 -----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 405 -----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred -----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 36678888888888777755544445543
No 96
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.078 Score=60.99 Aligned_cols=270 Identities=17% Similarity=0.202 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC
Q 003146 450 LREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN 529 (844)
Q Consensus 450 l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 529 (844)
+.-.|+.+|++++..+- -.+..+.+.++++..+|.+|..|+-+...+-+.. ++.. +.+++....+|.+.+
T Consensus 123 vVglAL~alg~i~s~Em---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~-----e~f~~~~~~lL~ek~ 192 (866)
T KOG1062|consen 123 VVGLALCALGNICSPEM---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLV-----EHFVIAFRKLLCEKH 192 (866)
T ss_pred ehHHHHHHhhccCCHHH---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHH-----HHhhHHHHHHHhhcC
Confidence 45677888888876542 1245566777888899999999888877776553 2222 225677777788888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcC---C-----------CCHHHHHHHHHHHhcCCCCCHHHHH
Q 003146 530 ANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLS---S-----------TSENEKAAAVGILSNLPVSNKKATE 595 (844)
Q Consensus 530 ~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~---~-----------~~~~~~~~a~~~L~~L~~~~~~~~~ 595 (844)
..|-..+..++..++..+++.+. +.+. ..+.||..|++ + .++-.+......|.-|..+++...+
T Consensus 193 hGVL~~~l~l~~e~c~~~~~~l~-~fr~-l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd 270 (866)
T KOG1062|consen 193 HGVLIAGLHLITELCKISPDALS-YFRD-LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASD 270 (866)
T ss_pred CceeeeHHHHHHHHHhcCHHHHH-HHHH-HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHH
Confidence 77777777777777766554432 2221 44556655553 1 1455555566666666555554433
Q ss_pred HHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 003146 596 LLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISL 675 (844)
Q Consensus 596 ~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL 675 (844)
.+. ..|-+.....+ ..+..-+.+...++..+..+-. +...+. -++.+|.++|.+.+-.+|.-|...|
T Consensus 271 ~M~-----DiLaqvatntd-sskN~GnAILYE~V~TI~~I~~--~~~Lrv-----lainiLgkFL~n~d~NirYvaLn~L 337 (866)
T KOG1062|consen 271 LMN-----DILAQVATNTD-SSKNAGNAILYECVRTIMDIRS--NSGLRV-----LAINILGKFLLNRDNNIRYVALNML 337 (866)
T ss_pred HHH-----HHHHHHHhccc-ccccchhHHHHHHHHHHHhccC--CchHHH-----HHHHHHHHHhcCCccceeeeehhhH
Confidence 332 12223333222 1222223344444444443332 222121 1234444555444444444444444
Q ss_pred HHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc
Q 003146 676 AQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET 755 (844)
Q Consensus 676 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~ 755 (844)
...-..+++. +..+. ..++.+|.+.|..++..|+.-+..|+.+.
T Consensus 338 ~r~V~~d~~a---------------------------------vqrHr--~tIleCL~DpD~SIkrralELs~~lvn~~- 381 (866)
T KOG1062|consen 338 LRVVQQDPTA---------------------------------VQRHR--STILECLKDPDVSIKRRALELSYALVNES- 381 (866)
T ss_pred HhhhcCCcHH---------------------------------HHHHH--HHHHHHhcCCcHHHHHHHHHHHHHHhccc-
Confidence 4433322221 01111 56788999999999999998888887776
Q ss_pred chhhhHHHHhcCChHHHHHHhhcCCHHHHHHHH
Q 003146 756 WESGSNYLAKLSGTQAIIKVLESGNAKAQEKAL 788 (844)
Q Consensus 756 ~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~ 788 (844)
++..+ +..++.+|++.+++.+....
T Consensus 382 ---Nv~~m-----v~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 382 ---NVRVM-----VKELLEFLESSDEDFKADIA 406 (866)
T ss_pred ---cHHHH-----HHHHHHHHHhccHHHHHHHH
Confidence 44444 66788888777777766543
No 97
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=0.0085 Score=70.45 Aligned_cols=408 Identities=13% Similarity=0.146 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhcc
Q 003146 281 EEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKE 360 (844)
Q Consensus 281 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~ 360 (844)
..|..++.-+.++++.-.. .... .+.+|.+..++.++...+++.|...+.++...-..... ...-..+.+++...+
T Consensus 252 ~Vr~~~a~~l~~~a~~~~~--~~~~-s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 252 MVRRAVASNLGNIAKVLES--EIVK-SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVKSLTESLVQAVED 327 (759)
T ss_pred hhHHHHHhhhHHHHHHHHH--HHHH-hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHhcC
Confidence 3455556666655553222 3333 78889999999888888999888888877632111101 123467788888888
Q ss_pred CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC--cccHHHHHHcCChHHHHH
Q 003146 361 GSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL--AENIQRLVISGIVSPLLQ 438 (844)
Q Consensus 361 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~~~~~i~~~g~v~~Lv~ 438 (844)
++..++...+.....|...-.. ..+...-+++...++++...+++..++.-...++.+ .++...+....++|.+-.
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~ 405 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQV 405 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHH
Confidence 8888887777776666542111 233345678888888887777777766655555543 234455555566777666
Q ss_pred HhhccCCcchhhHHHHHHHHHHHhcChhhhccc----chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHh
Q 003146 439 LLFSVTSVLMTLREPASAILARIAQSESILVNK----DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKE 514 (844)
Q Consensus 439 lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~----~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 514 (844)
+..+.+. .++...+....++.. ++..+ ...+.+...++...+.++.+..+.+..+-..+ ....-....
T Consensus 406 lv~d~~~---~vr~a~a~~~~~~~p---~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~--~v~g~~~~s 477 (759)
T KOG0211|consen 406 LVLDNAL---HVRSALASVITGLSP---ILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN--DVIGISTVS 477 (759)
T ss_pred HHhcccc---hHHHHHhccccccCc---cCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc--Ccccchhhh
Confidence 6655542 344444443333321 11122 23455666777788899998887765543332 122222334
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHH-HHhcCCCCHHHHHHHHHHHhcCCCCCHHH
Q 003146 515 NGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILV-DITLSSTSENEKAAAVGILSNLPVSNKKA 593 (844)
Q Consensus 515 ~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv-~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 593 (844)
...++.+..+-.+..-+++.+..+.+..++...... ..++. +..++ ..+. +..-.++.+|+..+..++....
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~---~~~~~-~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G-- 550 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVE---FFDEK-LAELLRTWLP-DHVYSIREAAARNLPALVETFG-- 550 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhH---HhhHH-HHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhC--
Confidence 445677777776666678888777777766544422 22222 22222 2222 1223455555554444422110
Q ss_pred HHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 003146 594 TELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASI 673 (844)
Q Consensus 594 ~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~ 673 (844)
.++ .....++.++.....++-..+ ...+.++..++.-.. ..+.....+|.+.++..+..+.||..+|.
T Consensus 551 ~~w-~~~~~i~k~L~~~~q~~y~~R-------~t~l~si~~la~v~g----~ei~~~~Llp~~~~l~~D~vanVR~nvak 618 (759)
T KOG0211|consen 551 SEW-ARLEEIPKLLAMDLQDNYLVR-------MTTLFSIHELAEVLG----QEITCEDLLPVFLDLVKDPVANVRINVAK 618 (759)
T ss_pred cch-hHHHhhHHHHHHhcCcccchh-------hHHHHHHHHHHHHhc----cHHHHHHHhHHHHHhccCCchhhhhhHHH
Confidence 111 123345555555544422221 122223322221111 23556678999999999999999999999
Q ss_pred HHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcc
Q 003146 674 SLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 674 aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
.|..+...-. ....+..+.+.+..+-.+.+.+++..|..|+..+...
T Consensus 619 ~L~~i~~~L~---------------------------------~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 619 HLPKILKLLD---------------------------------ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHhhcc---------------------------------hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 9998764211 1223444556666666788999999999998877654
Q ss_pred c
Q 003146 754 E 754 (844)
Q Consensus 754 ~ 754 (844)
.
T Consensus 666 ~ 666 (759)
T KOG0211|consen 666 R 666 (759)
T ss_pred H
Confidence 3
No 98
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.1 Score=57.55 Aligned_cols=369 Identities=19% Similarity=0.140 Sum_probs=193.1
Q ss_pred hhHHHHhhhhCcHHHHHHhhc---------CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHH
Q 003146 298 AVWRRIGRIQGCIVMLVSMLS---------GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKIL 368 (844)
Q Consensus 298 ~~~~~i~~~~g~i~~Lv~lL~---------s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~ 368 (844)
..++..-+...++.-|-+.=. ..++-.|.+|++.|..+-.+++ |+ .-.+++.++... .++..
T Consensus 171 ~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk----ma----~lklv~hf~~n~-smknq 241 (898)
T COG5240 171 QTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK----MA----QLKLVEHFRGNA-SMKNQ 241 (898)
T ss_pred HHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH----HH----HHHHHHHhhccc-ccccc
Confidence 344554444555555444321 1356778999999988765542 22 234555555543 22222
Q ss_pred HH-----HHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhc
Q 003146 369 MA-----TALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFS 442 (844)
Q Consensus 369 aa-----~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~ 442 (844)
-| ++...+-.. ...... ..|.|-..|++.-..+...+++++..++...- ....++ ..|..|-.+|.+
T Consensus 242 ~a~V~lvr~~~~ll~~n~q~~~q-----~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s 314 (898)
T COG5240 242 LAGVLLVRATVELLKENSQALLQ-----LRPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKS 314 (898)
T ss_pred hhheehHHHHHHHHHhChHHHHH-----HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhc
Confidence 22 222222221 122221 22455555666556778888888887774321 122222 245567777776
Q ss_pred cCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHH
Q 003146 443 VTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLL 522 (844)
Q Consensus 443 ~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv 522 (844)
+. ...+-.|..+|..|+...+.... -+-+.+-+++++.+..+-..|+..|..-... +.... .+..+.
T Consensus 315 ~r---v~~rFsA~Riln~lam~~P~kv~-vcN~evEsLIsd~Nr~IstyAITtLLKTGt~----e~idr-----Lv~~I~ 381 (898)
T COG5240 315 TR---VVLRFSAMRILNQLAMKYPQKVS-VCNKEVESLISDENRTISTYAITTLLKTGTE----ETIDR-----LVNLIP 381 (898)
T ss_pred ch---HHHHHHHHHHHHHHHhhCCceee-ecChhHHHHhhcccccchHHHHHHHHHcCch----hhHHH-----HHHHHH
Confidence 65 34678899999999876421111 1223344556666666666676666553222 22111 233444
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC
Q 003146 523 PFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNL 602 (844)
Q Consensus 523 ~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~ 602 (844)
.++.+-++.-+..+..+++.|+-.-+..-. ..+.-|...|.+.+.-+-+..+..++..+....|+.++ .+
T Consensus 382 sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----ra 451 (898)
T COG5240 382 SFVHDMSDGFKIIAIDALRSLSLLFPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RA 451 (898)
T ss_pred HHHHhhccCceEEeHHHHHHHHhhCcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HH
Confidence 455555555555555555555544342211 13334445555445445555555555555444444322 23
Q ss_pred hHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCC-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 003146 603 LPSLISAATSSTITKTHSTPWLVESVAGILIRFTDP-SDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQN 681 (844)
Q Consensus 603 v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~ 681 (844)
+..|+.++.+..-. ++.-..++.|++-.-. .+|- ..+..+.+-+--.+.-+|..|..||..++.+
T Consensus 452 Le~LC~fIEDcey~------~I~vrIL~iLG~EgP~a~~P~--------~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln 517 (898)
T COG5240 452 LEVLCTFIEDCEYH------QITVRILGILGREGPRAKTPG--------KYVRHIYNRLILENNIVRSAAVQALSKFALN 517 (898)
T ss_pred HHHHHHHHhhcchh------HHHHHHHHHhcccCCCCCCcc--------hHHHHHHHHHHHhhhHHHHHHHHHHHHhccC
Confidence 44555655543210 1222222233222111 1111 1233333333345677899999999998876
Q ss_pred CccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhc
Q 003146 682 SLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQ 752 (844)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~ 752 (844)
..... .-..+...|-++|.+.|++||..|..+|-++-.
T Consensus 518 ~~d~~---------------------------------~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 518 ISDVV---------------------------------SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ccccc---------------------------------cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 44311 112245788899999999999999999998864
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.041 Score=56.54 Aligned_cols=273 Identities=13% Similarity=0.101 Sum_probs=154.5
Q ss_pred HHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-c--hh--hhhhhhcCchHHHHHHhh
Q 003146 326 HDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-D--QS--RASLGEDGAIEPLVRMFR 400 (844)
Q Consensus 326 ~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~--~~--~~~i~~~g~i~~Lv~lL~ 400 (844)
...+.+|-.|-...+....+ ....+.|-.-|..++..++..++..++.+..+ + .. -..+...|.++.++....
T Consensus 61 tlcVscLERLfkakegahla--pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAHLA--PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred hhHHHHHHHHHhhccchhhc--hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 33556666554322211111 12233333334455677888787777766543 3 22 223346899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHH--HHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchH
Q 003146 401 VGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPL--LQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVA 474 (844)
Q Consensus 401 ~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~L--v~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i 474 (844)
..+.++-+.|...+..++..+..-..+..+....++ ..+-...++ -.+......+-.+.+-. ......|.+
T Consensus 139 geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 999999999999999999988877777766655543 222222221 24455666655555443 233445666
Q ss_pred HHHHHhhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC--HHHHHHHHHHHH-Hhhhh----
Q 003146 475 QQMLSLLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN--ANIRAAALNLVC-TLSKD---- 546 (844)
Q Consensus 475 ~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~v~~~A~~~L~-~ls~~---- 546 (844)
..|..-|.. .+.-++.+++.....|... ..-++.+.+.|.++.+..+....+ |--+-.+.-... .++..
T Consensus 216 dlLeaElkGteDtLVianciElvteLaet---eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimd 292 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAET---EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMD 292 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHHH---hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhh
Confidence 666665654 4556888888888888765 455777889999999999886443 322222222111 11110
Q ss_pred -hhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHh
Q 003146 547 -VYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAA 610 (844)
Q Consensus 547 -~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll 610 (844)
.++.+.+.+. ..+..-...+. ..|++.+.+|.-+++.+..+ .+-.+.+. ..+-|..-.++
T Consensus 293 vseeaiceali-iaidgsfEmiE-mnDpdaieaAiDalGilGSn-teGadlll-kTgppaaehll 353 (524)
T KOG4413|consen 293 VSEEAICEALI-IAIDGSFEMIE-MNDPDAIEAAIDALGILGSN-TEGADLLL-KTGPPAAEHLL 353 (524)
T ss_pred cCHHHHHHHHH-HHHHhhHHhhh-cCCchHHHHHHHHHHhccCC-cchhHHHh-ccCChHHHHHH
Confidence 1111211111 02222233333 46777777788888888663 33344444 34444444444
No 100
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.01 Score=67.98 Aligned_cols=281 Identities=17% Similarity=0.194 Sum_probs=166.1
Q ss_pred CcHHHHHHHhcCC-HHHHHHHH-HHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHH
Q 003146 267 GSLSALVKSLTRD-VEEQREAV-GLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALH 344 (844)
Q Consensus 267 g~i~~Lv~~L~~~-~~~~~~A~-~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~ 344 (844)
|.+..+-.-|.+. .+.|+.|+ +.+..+....+ ..+..|-++......|-+.....---+.|-+......
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-- 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD-------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-- 83 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc-------hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--
Confidence 3444444444432 24455555 44555544332 2455667777777788776666555566655432221
Q ss_pred HHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH
Q 003146 345 MAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
..+++..+++=..+.++..|..|.++++.+-...-. .-...+|.+.++++++-+++.|+.+..++-. .+.
T Consensus 84 --a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~ 153 (734)
T KOG1061|consen 84 --AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDP 153 (734)
T ss_pred --HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CCh
Confidence 125666677766777888888888777766544211 1245789999999999999998877776643 344
Q ss_pred HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh----hhcccchHHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 425 QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES----ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~----~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
....+.|.++.|-+++.+.++ .+...|+.+|..+..... .......+..++..++.-+...|-..+..|..-.
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p---~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNP---MVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred hhccccchhHHHHHHhcCCCc---hHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 555678999999999985553 366788888888876642 1112223444444444333334444444443322
Q ss_pred cCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHH
Q 003146 501 AHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAA 579 (844)
Q Consensus 501 ~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a 579 (844)
... . +.+ ...+..+...+.+.++.+...+.+.+..+....+. +.+.+-.+.-++|+.++.. .+ +.+..+
T Consensus 231 p~d---~-~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~-~~-e~qyva 299 (734)
T KOG1061|consen 231 PKD---S-REA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSS-ES-EIQYVA 299 (734)
T ss_pred CCC---c-hhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecc-cc-hhhHHH
Confidence 221 1 111 12567778888888888888888888877665554 2223333344556665553 22 444433
No 101
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.037 Score=62.42 Aligned_cols=277 Identities=15% Similarity=0.164 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCC--hHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc
Q 003146 450 LREPASAILARIAQSESILVNKDVAQQMLSLLNLCS--PTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME 527 (844)
Q Consensus 450 l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~ 527 (844)
..--|+.+++|+...+-... .-..+-.+|.+++ +-++..++-+|..|-+..+ +.+...++.+.++.+|.+
T Consensus 127 fv~LAL~~I~niG~re~~ea---~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp-----Dl~~~~~W~~riv~LL~D 198 (938)
T KOG1077|consen 127 FVCLALHCIANIGSREMAEA---FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP-----DLVNPGEWAQRIVHLLDD 198 (938)
T ss_pred HHHHHHHHHHhhccHhHHHH---hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc-----cccChhhHHHHHHHHhCc
Confidence 44567777888765441111 1122335665543 4588888888888877652 233345689999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCC------------CHHHHHHHHHHHhcCCCC-CHHHH
Q 003146 528 TNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSST------------SENEKAAAVGILSNLPVS-NKKAT 594 (844)
Q Consensus 528 ~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~------------~~~~~~~a~~~L~~L~~~-~~~~~ 594 (844)
.+-.+..++..++..++...++.....+.. .+..|.++....+ .+=.+.-.+++|.+.+.. ++..+
T Consensus 199 ~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r 277 (938)
T KOG1077|consen 199 QHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR 277 (938)
T ss_pred cccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH
Confidence 999999999999999988777554332221 3444444433322 233345677777777643 33333
Q ss_pred HHHHhCCChHHHHHHhhcCCCC----CCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 003146 595 ELLKKTNLLPSLISAATSSTIT----KTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSS 670 (844)
Q Consensus 595 ~~l~~~~~v~~L~~ll~~~~~~----~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~ 670 (844)
..+. +.+..++...+.+... .....+.+.-.++....++.. +++.. ......|.++|.+..+.+|..
T Consensus 278 ~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~--e~~ll-----~~~~~~Lg~fls~rE~NiRYL 348 (938)
T KOG1077|consen 278 ARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS--EPELL-----SRAVNQLGQFLSHRETNIRYL 348 (938)
T ss_pred HHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC--cHHHH-----HHHHHHHHHHhhcccccchhh
Confidence 3332 2233333333322111 111111122222222233322 22211 123455666776666677777
Q ss_pred HHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc-CCChhhHHHHHHHHHh
Q 003146 671 ASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE-GKEREADETVLGALAS 749 (844)
Q Consensus 671 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~-~~~~~v~~~A~~AL~~ 749 (844)
|...++.|+.+.... .++..+ ...++..|. +.|..+|..|++-|..
T Consensus 349 aLEsm~~L~ss~~s~-------------------------------davK~h--~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 349 ALESMCKLASSEFSI-------------------------------DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred hHHHHHHHHhccchH-------------------------------HHHHHH--HHHHHHHhccccchHHHHHHHHHHHH
Confidence 777777666543221 122222 567778887 8899999999999988
Q ss_pred hhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHH
Q 003146 750 LLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEK 786 (844)
Q Consensus 750 L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~ 786 (844)
+.+.+ +++.| +..+++.|.+-++.+|+.
T Consensus 396 mcD~~----Nak~I-----V~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 396 MCDVS----NAKQI-----VAELLQYLETADYSIREE 423 (938)
T ss_pred Hhchh----hHHHH-----HHHHHHHHhhcchHHHHH
Confidence 87766 55655 677888888888777765
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0016 Score=72.50 Aligned_cols=247 Identities=18% Similarity=0.166 Sum_probs=161.1
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc-C--C----ccHH
Q 003146 272 LVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS-N--T----QNAL 343 (844)
Q Consensus 272 Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~--~----~~~~ 343 (844)
++.+..+ |..+|..|+..|..|+..-.....+ ....++++++++..++..|+..++-++. . + .+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 4444443 5668889999988887754443333 3467888999999999888666555442 1 1 1233
Q ss_pred HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHH-Hh--hc
Q 003146 344 HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD-QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQ-NL--SL 419 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~-nL--s~ 419 (844)
.+.+ .++..+...+++.+..+|..|+.+|+.+.... +.-....+ ..+..-++. .+........++ +- ++
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRR--kr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRR--KRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhh--hhhcccchHHHHhcCCccc
Confidence 3333 47888899999999999999999999876542 21111111 111111110 011111111222 11 11
Q ss_pred ------------CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChH
Q 003146 420 ------------LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPT 487 (844)
Q Consensus 420 ------------~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~ 487 (844)
.++.-..++..|+-..++.-|.+. ...++++|...++.|+.+..-. ...++..|++++++....
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE---f~EVR~AAV~Sl~~La~ssP~F-A~~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE---FYEVRRAAVASLCSLATSSPGF-AVRALDFLVDMFNDEIEV 425 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHH---HHHHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccHHHH
Confidence 111234567788888888777554 4679999999999999875321 124688999999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 488 IQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTL 543 (844)
Q Consensus 488 ~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~l 543 (844)
+|..|+.+|..++.+. ...+.-++.+...|.+.++++|+..-.+|.+.
T Consensus 426 VRL~ai~aL~~Is~~l--------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHL--------AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHHh--------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999998663 22333578888999999999999998888765
No 103
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.014 Score=62.33 Aligned_cols=237 Identities=19% Similarity=0.238 Sum_probs=168.8
Q ss_pred HHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcCh-----hhH----HHHhcCCcHHHH
Q 003146 202 FALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENA-----DYK----EKMANVGSLSAL 272 (844)
Q Consensus 202 ~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~-----~~~----~~i~~~g~i~~L 272 (844)
..++.+.-++.-|+.. -.+.+-++++.++++|.+.|.++....+..|..|.-.+- +.. +++++.+.++.|
T Consensus 103 d~IQ~mhvlAt~PdLY-p~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLY-PILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhcChHHH-HHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3456677788888742 366777899999999999999999999999999864321 111 445778888889
Q ss_pred HHHhcC-CH---HH---HHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHHhhcCC--ChHHHHHHHHHHHHhcc-CCcc
Q 003146 273 VKSLTR-DV---EE---QREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVSMLSGN--DPVASHDAGKLLNALSS-NTQN 341 (844)
Q Consensus 273 v~~L~~-~~---~~---~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~--d~~~~~~A~~~L~nLs~-~~~~ 341 (844)
++.+.+ +. ++ ...+...+-|+.. .++.+..+.+ .|.+.+|+.-+... -..-...|..+|.-+-. .++|
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 888876 22 21 2245566667665 4778888887 79999988866432 22334566677776654 4458
Q ss_pred HHHHHHcCChHHHHHHhcc----CC--H---HHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHH
Q 003146 342 ALHMAEAGYFKPLVQYLKE----GS--D---MSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALN 412 (844)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~----~~--~---~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 412 (844)
+.......++..+++-+.- ++ . +.-.+.-.+|+.+-....++..+....++....-+++. ....+..|++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 8888888899988877642 21 1 22335556666667778999999998888887777776 4456778889
Q ss_pred HHHHhhcCcc---cHHHHHHcCChHHHHHHhh
Q 003146 413 ALQNLSLLAE---NIQRLVISGIVSPLLQLLF 441 (844)
Q Consensus 413 aL~nLs~~~~---~~~~i~~~g~v~~Lv~lL~ 441 (844)
+|-....+++ +|.++++.++...++.+.-
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 9988887654 8899999888887776643
No 104
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.025 Score=64.93 Aligned_cols=256 Identities=13% Similarity=0.142 Sum_probs=154.5
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH
Q 003146 269 LSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA 346 (844)
Q Consensus 269 i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~ 346 (844)
.+.+++.... |.+.++..--.+.+.++. |+.. .+++..++.=..+++|.++..|++.+..+-.. .+.
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i~ 119 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KIT 119 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HHH
Confidence 4445555554 445555555566666664 3221 44556666656678898888877766544321 111
Q ss_pred HcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCccc-HH
Q 003146 347 EAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAEN-IQ 425 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~-~~ 425 (844)
.-.+.|+.+.++++++.+|..++-...++-. .+.......|.++.|..++.+.++.+..+|+.+|..+.....+ -.
T Consensus 120 -ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 -EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred -HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 2357789999999999999877766666533 3344456689999999999999999999999999999854332 11
Q ss_pred HHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 426 RLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 426 ~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
..+..-.+..++..+...+ +. .-+.+|-.++... +.......+..+...+...++.+...++.++..+....
T Consensus 197 ~~l~~~~~~~lL~al~ec~---EW---~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECT---EW---GQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred ccccHHHHHHHHHHHHHhh---hh---hHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1111112233444443332 11 2233344444331 11222345566666777778888888888888776553
Q ss_pred ChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 504 SASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 504 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
.. .....-....++|+.++..+. +++.-|.+=+..+-...+
T Consensus 271 --~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 271 --KQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRP 311 (734)
T ss_pred --HH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence 22 222233446778888887777 777777665555444433
No 105
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.42 E-value=0.0014 Score=67.40 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=112.8
Q ss_pred ccCCHHHHHHHHHHHHHhhcCc---hhhhhhhh--cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCCh
Q 003146 359 KEGSDMSKILMATALSRMELTD---QSRASLGE--DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIV 433 (844)
Q Consensus 359 ~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v 433 (844)
.+.++..|..+...|..+.... .....+.+ ...+..+...+.+....+...|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4556777888888888776543 22333322 245567777777666678888999999988653322222233467
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccch-HHHHHHhhccCChHHHHHHHHHHHHhhcCCC--hhHHHH
Q 003146 434 SPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDV-AQQMLSLLNLCSPTIQYHLLHALNSIAAHSS--ASNVRR 510 (844)
Q Consensus 434 ~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~-i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~ 510 (844)
|+|+..+.+.. ..+++.|..+|..+..... ..... ...+...+.+.+|.+|..++..|..+....+ ......
T Consensus 97 ~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSK---KFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG------HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHcccc---HHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 88888887765 3478899999998877532 11233 5566667778899999999999988876543 111111
Q ss_pred HHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 511 KMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 511 ~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
...-...++.+..++.++++++|..|..++..+....++.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1111346888999999999999999999999987665543
No 106
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.17 Score=58.12 Aligned_cols=348 Identities=17% Similarity=0.148 Sum_probs=172.4
Q ss_pred cCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCH---HHHHHHHHHHHHhhcCchhhhhhhhcCchHH
Q 003146 318 SGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSD---MSKILMATALSRMELTDQSRASLGEDGAIEP 394 (844)
Q Consensus 318 ~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~---~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 394 (844)
.+.+.-+|.+|.+.|..+-.++. -++..++..+..+.. -.+....++-..+...+ ..+..-..+.
T Consensus 182 ~s~~~m~QyHalglLyqirk~dr--------la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~----~~~~s~~~~f 249 (865)
T KOG1078|consen 182 NSDNIMVQYHALGLLYQIRKNDR--------LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN----QQADSPLFPF 249 (865)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc----ccchhhHHHH
Confidence 45566788999999887654332 233344444444321 11111111111222111 1111122344
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchH
Q 003146 395 LVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVA 474 (844)
Q Consensus 395 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i 474 (844)
+=..|++....+...|+.++.+|..... ..+. .++..|-.++.++. ..+|-.|..+|-.++..-..... -+-
T Consensus 250 l~s~l~~K~emV~~EaArai~~l~~~~~--r~l~--pavs~Lq~flssp~---~~lRfaAvRtLnkvAm~~P~~v~-~cN 321 (865)
T KOG1078|consen 250 LESCLRHKSEMVIYEAARAIVSLPNTNS--RELA--PAVSVLQLFLSSPK---VALRFAAVRTLNKVAMKHPQAVT-VCN 321 (865)
T ss_pred HHHHHhchhHHHHHHHHHHHhhccccCH--hhcc--hHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHhCCcccc-ccc
Confidence 4556667777888888889888864321 1111 15566666665554 45788899999888765311111 111
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Q 003146 475 QQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQ 554 (844)
Q Consensus 475 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~ 554 (844)
..|-.++.+.+..+-..|..+|+.-.. +.....++. -+...+.=+.++..-+...|...|+.. .+..
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~---fp~k---- 388 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK---FPRK---- 388 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh---ccHH----
Confidence 223334444444444444444443222 122221111 122222222333333333343333322 2211
Q ss_pred hchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHh
Q 003146 555 LGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIR 634 (844)
Q Consensus 555 l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~ 634 (844)
....+.-|-++|.+++.-+-+.+...++..+...++.. .+-++..|+.++.+.. ...-+...|..
T Consensus 389 -~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-----Ke~~L~~LCefIEDce---------~~~i~~rILhl 453 (865)
T KOG1078|consen 389 -HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-----KERGLEHLCEFIEDCE---------FTQIAVRILHL 453 (865)
T ss_pred -HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-----hhHHHHHHHHHHHhcc---------chHHHHHHHHH
Confidence 01133445556665554444444444444433333331 1234455555554432 12233333333
Q ss_pred ccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcc
Q 003146 635 FTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVK 714 (844)
Q Consensus 635 l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~ 714 (844)
+.... |. .......+..+.+...=.+..+|..|..||++++.+.+.++
T Consensus 454 LG~Eg-P~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~---------------------------- 501 (865)
T KOG1078|consen 454 LGKEG-PK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL---------------------------- 501 (865)
T ss_pred HhccC-CC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc----------------------------
Confidence 33211 00 01112344555566666788899999999999996655533
Q ss_pred cchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhc
Q 003146 715 STFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQ 752 (844)
Q Consensus 715 ~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~ 752 (844)
..+...|.+++.+.|++||+.|..+|.++-.
T Consensus 502 -------~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 502 -------PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred -------ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 1245678889999999999999999998873
No 107
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.072 Score=65.28 Aligned_cols=397 Identities=15% Similarity=0.154 Sum_probs=199.7
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhcc--CCccHHHHHHcCChHHHHHHhccCCHH-------HH-------------
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSS--NTQNALHMAEAGYFKPLVQYLKEGSDM-------SK------------- 366 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~~L~~~~~~-------~~------------- 366 (844)
.......+|.++|.-+|+.|...|.-.=. +..-+.. .+..|++-|..|... ..
T Consensus 862 I~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~G 936 (1702)
T KOG0915|consen 862 IQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKS-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDG 936 (1702)
T ss_pred HHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHH-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCC
Confidence 33677888888888888888766543321 2222333 344555555443211 00
Q ss_pred --HHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCC-HHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc
Q 003146 367 --ILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGK-LEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV 443 (844)
Q Consensus 367 --~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~ 443 (844)
...-.-|.+|+. .++++..|-.+.++.++.. -..|+-|+--+..++.....+.+=.-.-.||.|.+.=.++
T Consensus 937 g~isTYKELc~LAS------dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP 1010 (1702)
T KOG0915|consen 937 GKISTYKELCNLAS------DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDP 1010 (1702)
T ss_pred CcchHHHHHHHHHh------hcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCC
Confidence 001111222222 1333444455555555432 2445666666666664432111111123566676664444
Q ss_pred CCcchhhHHHHHHHHHHHhcCh-hhhccc---chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHH
Q 003146 444 TSVLMTLREPASAILARIAQSE-SILVNK---DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIH 519 (844)
Q Consensus 444 ~~~~~~l~~~a~~~L~~l~~~~-~~l~~~---~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~ 519 (844)
+ ..+ ..|..-+||.-..+ .-+.+. ...+.|+.-+.+..+.+|+.++-+|..|-+..+.++..+.+. ....
T Consensus 1011 ~---~~V-q~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~ 1084 (1702)
T KOG0915|consen 1011 D---KKV-QDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWE 1084 (1702)
T ss_pred c---HHH-HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHH
Confidence 3 234 45666667654433 222222 334455555556678899999999999998865555555554 2555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhhhhhHHH--HHHh-chhhHHHHHHHhcC----CCCHHHHHHHHHHHhcCCCCCHH
Q 003146 520 LLLPFLMETNANIRAAALNLVCTLSKDVYEEL--AEQL-GDKYLNILVDITLS----STSENEKAAAVGILSNLPVSNKK 592 (844)
Q Consensus 520 ~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i--~~~l-~~~~l~~Lv~lL~~----~~~~~~~~~a~~~L~~L~~~~~~ 592 (844)
.+.+.+++=.+.||+.|-++.+.+++-.-... .+.. +...+..++.+|-+ +.-.+++..+.+.+..|+.....
T Consensus 1085 ~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1085 AAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 66666666666788877766665543211000 0000 11133344444433 34568888899999888765443
Q ss_pred HHHHHHhCCChHHHHHHhhcCCCCC-----CCCchhHHHHHHHHHHhccCCCCHHHH---------HHHHHcCCHHHHHH
Q 003146 593 ATELLKKTNLLPSLISAATSSTITK-----THSTPWLVESVAGILIRFTDPSDKKLQ---------QYSVQHGVIRLLVK 658 (844)
Q Consensus 593 ~~~~l~~~~~v~~L~~ll~~~~~~~-----~~~~~~l~e~a~~aL~~l~~~~~~~~~---------~~i~~~g~i~~Lv~ 658 (844)
.-+- .-...+|.|.+....-.... .+. .....+++..+.-=+....|.+. ..-.-...+|.+.+
T Consensus 1165 ~lkP-~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~e 1242 (1702)
T KOG0915|consen 1165 ELKP-HFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTE 1242 (1702)
T ss_pred hhcc-hhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1110 11233444444443211100 000 00111222222111111111111 00112357788888
Q ss_pred HhccC-CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCCh
Q 003146 659 LLSSE-SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKER 737 (844)
Q Consensus 659 lL~~~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~ 737 (844)
+++.+ .-.+|..+|..+..|+..-.. ...|. ....+..+.--..+.++
T Consensus 1243 l~R~sVgl~Tkvg~A~fI~~L~~r~~~-----------------emtP~--------------sgKll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1243 LVRGSVGLGTKVGCASFISLLVQRLGS-----------------EMTPY--------------SGKLLRALFPGAKDRNE 1291 (1702)
T ss_pred HHhccCCCCcchhHHHHHHHHHHHhcc-----------------ccCcc--------------hhHHHHHHhhccccccH
Confidence 88776 445677777777776643211 00111 12234555566678899
Q ss_pred hhHHHHHHHHHhhhcccc
Q 003146 738 EADETVLGALASLLQDET 755 (844)
Q Consensus 738 ~v~~~A~~AL~~L~~~~~ 755 (844)
.++.+-..|.+.|+.-+.
T Consensus 1292 sv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999998886554
No 108
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.31 Score=58.16 Aligned_cols=495 Identities=16% Similarity=0.141 Sum_probs=238.0
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-C-HHHHHHHHHHHHHccCCChhHHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-D-VEEQREAVGLLLDLSDLPAVWRRI 303 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~-~~~~~~A~~~L~~Ls~~~~~~~~i 303 (844)
++.-+.+.|++.+..++..+++-++.++...+-. .....+...+..++. + ...=..|+-+|.+|+...-.....
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 4555666677888999999999999998765522 111234445555544 2 233345777788887654322221
Q ss_pred hhhhCcHHHHHHhhcC--------CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHH-----HHHhccCCHHHHHHHH
Q 003146 304 GRIQGCIVMLVSMLSG--------NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPL-----VQYLKEGSDMSKILMA 370 (844)
Q Consensus 304 ~~~~g~i~~Lv~lL~s--------~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~L-----v~~L~~~~~~~~~~aa 370 (844)
. ...+|.++.-|.- ....+++.|+.+++.++..-+ ...++ +.+..| +..+=+.....|+.|+
T Consensus 418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays--~~~l~-p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS--PSDLK-PVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC--hhhhh-HHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 1 3456666665642 345678888888888764221 11111 123322 2233334456788888
Q ss_pred HHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHH-HcCChHHHHHHhhccC--Cc
Q 003146 371 TALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLV-ISGIVSPLLQLLFSVT--SV 446 (844)
Q Consensus 371 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~-~~g~v~~Lv~lL~~~~--~~ 446 (844)
+++.... |+.|-.|.=+.+...-|.- ++.+.+.. ...+..+. -.|...++++-|.... .=
T Consensus 493 AAlqE~V---------GR~~n~p~Gi~Lis~~dy~-------sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW 556 (1133)
T KOG1943|consen 493 AALQENV---------GRQGNFPHGISLISTIDYF-------SVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW 556 (1133)
T ss_pred HHHHHHh---------ccCCCCCCchhhhhhcchh-------hhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc
Confidence 8876643 3333333323333333321 11122211 11112222 2455555555544331 11
Q ss_pred chhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCCh-h-HHH--HHHHhCC---cHH
Q 003146 447 LMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSA-S-NVR--RKMKENG---AIH 519 (844)
Q Consensus 447 ~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~-~~~--~~i~~~g---~i~ 519 (844)
+..+++.++..|.+|+....-.......++|+....+++...|..+.-+...+...... . .+. ..-.-.| .++
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~ 636 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIP 636 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhcc
Confidence 24688999999999988764334456778888877778877776655554444322100 0 000 0000111 122
Q ss_pred HHHH-HhccCC-HHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 003146 520 LLLP-FLMETN-ANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELL 597 (844)
Q Consensus 520 ~Lv~-ll~~~~-~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l 597 (844)
++.. .+.-+. .-++...++.+..++.....-..+.+.++...-+.+.+.. .+ ..+.++..+++.+.. +...
T Consensus 637 ~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~i~~~av~av~~l~s-----~y~~ 709 (1133)
T KOG1943|consen 637 PICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-QIRDAAVSAVSDLVS-----TYVK 709 (1133)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-HHHHHHHHHHHHHHH-----HHHh
Confidence 2222 122221 2355566666776665444322233333222223333321 22 445556666655532 1111
Q ss_pred HhCC----ChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCC-CCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHH
Q 003146 598 KKTN----LLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDP-SDKKLQQYSVQHGVIRLLVKLLSSE-SVVAKSSA 671 (844)
Q Consensus 598 ~~~~----~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~A 671 (844)
.+.+ .+...+..+.+.+. ...+.....++..+... ....+|+.+ -..+......+ .+..|...
T Consensus 710 ~d~~~~~~li~~~ls~~~~~~~------~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~d~~a~aR~~~ 778 (1133)
T KOG1943|consen 710 ADEGEEAPLITRYLSRLTKCSE------ERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPSDAWAEARQQN 778 (1133)
T ss_pred cCchhhhHHHHHHHHHhcCchH------HHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcccccHHHHHHH
Confidence 1111 12223333332211 01222333333333211 122333332 11222222233 56778888
Q ss_pred HHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcC------CC--hhhHHHH
Q 003146 672 SISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEG------KE--READETV 743 (844)
Q Consensus 672 a~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~------~~--~~v~~~A 743 (844)
..++.+......... +.-.-......|++.|.+ +| .-||++|
T Consensus 779 V~al~~v~~~~~~~~------------------------------~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaA 828 (1133)
T KOG1943|consen 779 VKALAHVCKTVTSLL------------------------------FSESIEKFRETLLNALDDYTTDSRGDVGSWVREAA 828 (1133)
T ss_pred HHHHHHHHHHHHHhh------------------------------ccccHHHHHHHHHHHHhhcccccCccHHHHHHHHH
Confidence 888877765432110 000112345777777753 22 3599999
Q ss_pred HHHHHhhhccccchhhhHHHHhcCChHHHHH-Hhhc---CCHHHHHHHHHHHHHHHhh
Q 003146 744 LGALASLLQDETWESGSNYLAKLSGTQAIIK-VLES---GNAKAQEKALWILERIFRI 797 (844)
Q Consensus 744 ~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~-ll~~---~~~~~~~~A~~~L~~i~~~ 797 (844)
+.|+..+...-.- -.+.+.+-+.+++. +++. ....+|+-|..++.+|..+
T Consensus 829 m~al~~~~~~l~~----p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 829 MKALSSLLDTLSS----PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHHHhhhhhhcC----cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 9999988754320 11223334444443 3333 2334566777777777544
No 109
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.24 E-value=0.039 Score=60.39 Aligned_cols=225 Identities=16% Similarity=0.146 Sum_probs=151.3
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC--CChHHHHHHHHHHHHhccCCccHHHHHHcCCh
Q 003146 274 KSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG--NDPVASHDAGKLLNALSSNTQNALHMAEAGYF 351 (844)
Q Consensus 274 ~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s--~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i 351 (844)
-+|.++.++|..+.+.++.+..++..-+.+.+ .+.=-.++.-|.. .+..-++.|...++.+...+++...+ -.|.+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~-l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLK-LHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI-PRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH-cCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC-CHHHH
Confidence 35555677888899999999888887777776 5644444444543 33445678888888776544333332 44788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcC
Q 003146 352 KPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISG 431 (844)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g 431 (844)
..++.+..+.++..+..|..+|..++..+. ..+...||+..|++.+-++.....+..+.++..+-.+|..+..+...-
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~ 188 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGF 188 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCc
Confidence 889999988888899999999999987542 235678999999999998877788888899999998888877665433
Q ss_pred ChHHHHHHhhcc----CCcch--hhHHHHHHHHHHHhcC-hh--hhc--ccchHHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 432 IVSPLLQLLFSV----TSVLM--TLREPASAILARIAQS-ES--ILV--NKDVAQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 432 ~v~~Lv~lL~~~----~~~~~--~l~~~a~~~L~~l~~~-~~--~l~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
-+..++.-+.+. ..... .....+..++..+-.+ +. .+. +..++..|++.|..+++++|...+.+|..+-
T Consensus 189 dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 189 DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444444333 11111 1223344444444333 21 111 2257888888888888888887777777665
Q ss_pred cC
Q 003146 501 AH 502 (844)
Q Consensus 501 ~~ 502 (844)
.-
T Consensus 269 ri 270 (371)
T PF14664_consen 269 RI 270 (371)
T ss_pred CC
Confidence 43
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.21 E-value=0.02 Score=64.56 Aligned_cols=243 Identities=16% Similarity=0.133 Sum_probs=146.2
Q ss_pred CCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC------HHHHHHHHHHHHHccC-CChhHHHHhhhh
Q 003146 235 GSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD------VEEQREAVGLLLDLSD-LPAVWRRIGRIQ 307 (844)
Q Consensus 235 ~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~------~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~ 307 (844)
.+.+.++...|++||+|+...++..+..+.+.|..+.++..|+.. .+..-...+.|.-++. .+..+..+..+.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 355788999999999999999999999999999999999999863 3556667777777664 467777888767
Q ss_pred CcHHHHHHhhcC---------C--------ChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccC---------
Q 003146 308 GCIVMLVSMLSG---------N--------DPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEG--------- 361 (844)
Q Consensus 308 g~i~~Lv~lL~s---------~--------d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~--------- 361 (844)
+++..++..|.. . +......+..++.|+..+......-...+.++.++.+|..-
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 888888876621 1 23344567788888875433222212345566666654321
Q ss_pred CHHHHHHHHHHHHHhhcCc-hh-------hhh----hhhcCchHHHHHHhhcCCH--------HHHHHHHHHHHHhhcCc
Q 003146 362 SDMSKILMATALSRMELTD-QS-------RAS----LGEDGAIEPLVRMFRVGKL--------EAKLSALNALQNLSLLA 421 (844)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~-~~-------~~~----i~~~g~i~~Lv~lL~~~~~--------~~~~~A~~aL~nLs~~~ 421 (844)
.......+..+|.++-... .. ... ......+..|+.+|+..-. ..-.--+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 2344567777887773221 11 000 0113345556666542100 01111223344444333
Q ss_pred ccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh-cccchHHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 422 ENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL-VNKDVAQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 422 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
...++.++.-++|++-+-= ..+ .....-..|+.++.+..+.++..+...|+.||
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~-------------------------~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRK-------------------------KPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLC 336 (446)
T ss_pred HHHHHHHHHHhCCChhhcc-------------------------cCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3333333333333331110 011 12234568999998888999999999999999
Q ss_pred cC
Q 003146 501 AH 502 (844)
Q Consensus 501 ~~ 502 (844)
..
T Consensus 337 ~~ 338 (446)
T PF10165_consen 337 KE 338 (446)
T ss_pred hh
Confidence 75
No 111
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.56 Score=56.10 Aligned_cols=340 Identities=19% Similarity=0.175 Sum_probs=173.6
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCC-HHHHHHHHHHHHHhhcCchhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGS-DMSKILMATALSRMELTDQSRAS 385 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~~~~~~~ 385 (844)
.++|..|...|++.|..++..|+..+..+....+ ..+++ .++..+++++...+ +..-..++-+|+.|+...--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 5788899999999999999999999999986544 33332 46777777777665 34445777888888753211000
Q ss_pred hhhcCchHHHHHHhhc--------CCHHHHHHHHHHHHHhhcCcc--cHHHHHHcCChH-HHHHHhhccCCcchhhHHHH
Q 003146 386 LGEDGAIEPLVRMFRV--------GKLEAKLSALNALQNLSLLAE--NIQRLVISGIVS-PLLQLLFSVTSVLMTLREPA 454 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~--------~~~~~~~~A~~aL~nLs~~~~--~~~~i~~~g~v~-~Lv~lL~~~~~~~~~l~~~a 454 (844)
.. ...+|.+++-|.- ....+|..|+-..|.++...+ .-..++.. ..+ .|...+++.. ..+|..|
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDre---vncRRAA 491 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDRE---VNCRRAA 491 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCch---hhHhHHH
Confidence 00 1345555555532 123578899999999885422 11112211 111 1233344433 4577777
Q ss_pred HHHHHHHhcC-hhhhcccchHHHHHHhhccCChHHHHHHHHHHHH-hhcCCChhHHHHHHHhCCcHHHHHHH-hccCCHH
Q 003146 455 SAILARIAQS-ESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS-IAAHSSASNVRRKMKENGAIHLLLPF-LMETNAN 531 (844)
Q Consensus 455 ~~~L~~l~~~-~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~ 531 (844)
.+++-..... +.+ ..++ .|+...+.-+-..|.++-..+.. ++.. +.++.- .+..|+.- +.+-+..
T Consensus 492 sAAlqE~VGR~~n~---p~Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~---~~y~~~-----~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 492 SAALQENVGRQGNF---PHGI-SLISTIDYFSVTNRSNCYLDLCVSIAEF---SGYREP-----VFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHHHhccCCCC---CCch-hhhhhcchhhhhhhhhHHHHHhHHHHhh---hhHHHH-----HHHHHHhcccccccHH
Confidence 7766544332 211 0111 12222222233344444433322 2222 233332 23333333 5567889
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHH----HHHHHHHhcCCCCCHHHHHHHHh---CC---
Q 003146 532 IRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEK----AAAVGILSNLPVSNKKATELLKK---TN--- 601 (844)
Q Consensus 532 v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~----~~a~~~L~~L~~~~~~~~~~l~~---~~--- 601 (844)
+|+.|+++|..|+...++.. ....+++++.... +.+...+ .++..++.++-.-.+ +...+.+ ++
T Consensus 560 irelaa~aL~~Ls~~~pk~~----a~~~L~~lld~~l-s~~~~~r~g~~la~~ev~~~~~~l~~-~~~~l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYL----ADYVLPPLLDSTL-SKDASMRHGVFLAAGEVIGALRKLEP-VIKGLDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhh----cccchhhhhhhhc-CCChHHhhhhHHHHHHHHHHhhhhhh-hhhhhHHHHhhhhhh
Confidence 99999999999987766443 3346666776544 2444443 222233333211110 0000000 11
Q ss_pred ChHHHHH-HhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 003146 602 LLPSLIS-AATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 602 ~v~~L~~-ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~ 680 (844)
.++.+.. .+..+. . .-+.......+..+... +..........+.-..+.+.+...+ .+|..|.++++.+..
T Consensus 634 ii~~~~~~~~~rg~-----~-~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 634 IIPPICDRYFYRGQ-----G-TLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hccHHHHHHhccch-----H-HHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 1222221 111111 0 12333445555555543 2332333444455555666663444 788899999998875
No 112
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.12 Score=51.99 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=135.0
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHH
Q 003146 269 LSALVKSLTRDV---EEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHM 345 (844)
Q Consensus 269 i~~Lv~~L~~~~---~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i 345 (844)
+..+.+.|...+ ..+-.|+..|+++.. .+.|..+.....++........+.+| .++
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~-----------~~~i~~i~ka~~d~s~llkhe~ay~L----------gQ~ 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLG-----------PAAIKAITKAFIDDSALLKHELAYVL----------GQM 63 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCC-----------hHHHHHHHHhcccchhhhccchhhhh----------hhh
Confidence 444555555422 245567766666533 33344444444444222223334444 345
Q ss_pred HHcCChHHHHHHhccCC--HHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc-
Q 003146 346 AEAGYFKPLVQYLKEGS--DMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE- 422 (844)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~- 422 (844)
....+++.|+..|...+ +.+|..|+.+|+.+. ..+.++.|-++.+++...+++.+..|+..+-....
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 55678999999887764 567889999998855 23455666666666666777777777766532111
Q ss_pred ----cHHHH--------HHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHH
Q 003146 423 ----NIQRL--------VISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQY 490 (844)
Q Consensus 423 ----~~~~i--------~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~ 490 (844)
+.... ...+-|..|-..|.+.+.. ..-+..+...|.|+ ..+..|..|.+-+..+|.-.|-
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~-l~~Ry~amF~LRn~-------g~EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKP-LFERYRAMFYLRNI-------GTEEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchh-HHHHHhhhhHhhcc-------CcHHHHHHHHHhcccchHHHHH
Confidence 00000 0112244444444444432 22345666777766 3445677888888888888888
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC--CHHHHHHHHHHHHHhh
Q 003146 491 HLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET--NANIRAAALNLVCTLS 544 (844)
Q Consensus 491 ~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~A~~~L~~ls 544 (844)
.+.-+|..|-+.. .++.|...|.+. ++-+|..|+.+|..++
T Consensus 206 EvAfVfGQl~s~~-------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 206 EVAFVFGQLQSPA-------------AIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHhhccchh-------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 8888888875432 688888888765 4579999999997665
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.05 E-value=0.045 Score=60.79 Aligned_cols=252 Identities=14% Similarity=0.185 Sum_probs=145.1
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhHhc--ChhhHHHHhcCCcHHHHHHHhcCC-HHHHH---HHHHHHHHccCCChhH
Q 003146 227 IAVLLNRLGSSKPYNRLIMIQILRNLASE--NADYKEKMANVGSLSALVKSLTRD-VEEQR---EAVGLLLDLSDLPAVW 300 (844)
Q Consensus 227 ~p~l~~lL~s~~~~~~~~a~~~L~~L~~~--~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~---~A~~~L~~Ls~~~~~~ 300 (844)
+..+..+|++..+++|.+++.....|+.- +|..-..+...|. .|...|..+ +++-- .|...+.+.-.....+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44566778899999999999988888642 3332233333332 245555553 34333 3444444433323222
Q ss_pred HHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCcc----HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 301 RRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQN----ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRM 376 (844)
Q Consensus 301 ~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~----~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~L 376 (844)
.-| .|.+|.|...|++....++.+.+..+..++..... |.-|. ..-.|++.|++.+.+.|.+|..+++.+
T Consensus 684 pPi---~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 684 PPI---SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred Cch---hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 222 78999999999999999999999888888864332 33332 233578899999999999999999987
Q ss_pred hcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHH
Q 003146 377 ELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASA 456 (844)
Q Consensus 377 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~ 456 (844)
+.- |+...++..|+.-|+..+-..+.....++.-.+. -.|-...|=.+|.+-......++.-.+.
T Consensus 758 s~a------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 758 SRA------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred Hhh------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccCchhHHHHhHHH
Confidence 742 4444555555555544322222222222222221 1232222222333332222445555555
Q ss_pred HHHHHhcCh-----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 457 ILARIAQSE-----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 457 ~L~~l~~~~-----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
+++.+-+.- +++. ...|.|-+.|.+.++.-|.-|..++.+|.-+.
T Consensus 823 am~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 823 AMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 555443221 1110 12344445666778889999999998887664
No 114
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.07 Score=53.65 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=73.9
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHh
Q 003146 652 VIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV 731 (844)
Q Consensus 652 ~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~l 731 (844)
.|..|++-+..++...|..++..+++|-. .-+|+.|.+.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s-----------------------------------------~~ai~~L~k~ 226 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS-----------------------------------------PAAIPSLIKV 226 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc-----------------------------------------hhhhHHHHHH
Confidence 56778888888899999999999998762 2278999999
Q ss_pred hcC--CChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 732 LEG--KEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 732 L~~--~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
|.+ .++-||..|+.||+-++.+. .++.|.+.+.+..+-+++-+.-+|.-+
T Consensus 227 L~d~~E~pMVRhEaAeALGaIa~e~-------------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 227 LLDETEHPMVRHEAAEALGAIADED-------------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHhhhcchHHHHHHHHHHHhhcCHH-------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 964 56789999999999999886 477788888888999999988888644
No 115
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.016 Score=63.20 Aligned_cols=166 Identities=10% Similarity=0.085 Sum_probs=121.9
Q ss_pred HHhcCCcHHHHHHHhcCC-HHHHHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003146 262 KMANVGSLSALVKSLTRD-VEEQREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT 339 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~ 339 (844)
.+.+....+.|++.|+.+ ..+.--+...+.++.- .+..+..+.. .|.|..|++++.+.|...|.+..|.|+++-.+.
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 345566788899999763 2233345666666644 3556666776 999999999999999999999999999998754
Q ss_pred cc--HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc----hhhhhhhhcC----chHHHHHHhhcCCHHHHHH
Q 003146 340 QN--ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD----QSRASLGEDG----AIEPLVRMFRVGKLEAKLS 409 (844)
Q Consensus 340 ~~--~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~----~~~~~i~~~g----~i~~Lv~lL~~~~~~~~~~ 409 (844)
++ +-+....-++..++++.+++...++.++..+|.|+..+. +.+....+.. ....|++.++..+|-.-..
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 43 556667788999999999999999999999999998732 2343333311 2345667777778877677
Q ss_pred HHHHHHHhhcCcccHHHHH
Q 003146 410 ALNALQNLSLLAENIQRLV 428 (844)
Q Consensus 410 A~~aL~nLs~~~~~~~~i~ 428 (844)
.+..|.+++..+++...++
T Consensus 585 ~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 585 GCYILVRNAACDDTLDYIV 603 (743)
T ss_pred hHHHHHHHHhccchHHHHH
Confidence 7888888888777766655
No 116
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.86 E-value=0.002 Score=45.77 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=35.1
Q ss_pred hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 003146 381 QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLS 418 (844)
Q Consensus 381 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 418 (844)
+++..+.+.|++++|++++.++++.+++.|+++|+||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46777888999999999999999999999999999997
No 117
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.81 E-value=0.02 Score=58.74 Aligned_cols=184 Identities=20% Similarity=0.163 Sum_probs=109.8
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhHhcC--hhhHHHHhc--CCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC--hhHHH
Q 003146 230 LLNRLGSSKPYNRLIMIQILRNLASEN--ADYKEKMAN--VGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP--AVWRR 302 (844)
Q Consensus 230 l~~lL~s~~~~~~~~a~~~L~~L~~~~--~~~~~~i~~--~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~--~~~~~ 302 (844)
+-+.-.+.+.+.|..++..|+.++.++ ......+.. ...+..++..+.+ .+...+.|+..+..++..- .+...
T Consensus 12 l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 12 LEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 333346778899999999999998776 111122111 0233445555544 3346677888888877642 22222
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCch-
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQ- 381 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~- 381 (844)
+ ...+|.|+..+.+....+++.|..+|..+...-.....+ .++.+...+.+.++.+|..++..|..+.....
T Consensus 92 ~---~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 92 A---DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp H---HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred H---HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 1 457899999999998999999999998887643311111 14455566777889999988888887654322
Q ss_pred hhhhhhh----cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 382 SRASLGE----DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 382 ~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
....+.. ...++.+...+.++++++|+.|-.+++.+...
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 2222222 34778889999999999999999999988654
No 118
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.80 E-value=0.0025 Score=45.27 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=34.4
Q ss_pred hhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 003146 298 AVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS 337 (844)
Q Consensus 298 ~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~ 337 (844)
+.+..+.+ .|++|.|+.+++++++.++..|+++|.||+.
T Consensus 3 ~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 35666776 9999999999999999999999999999873
No 119
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.51 Score=50.92 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=161.6
Q ss_pred HHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC------cc----HHHHHHcCChHHH
Q 003146 285 EAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT------QN----ALHMAEAGYFKPL 354 (844)
Q Consensus 285 ~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~------~~----~~~i~~~g~i~~L 354 (844)
..+..+.-++.-|+....+.+ .++++.|+.+|.+++.++....+..|..|...+ +. ...+++.+.++.|
T Consensus 103 d~IQ~mhvlAt~PdLYp~lve-ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVE-LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHH-hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 345556667788899988887 999999999999999999999999999997321 22 3456678888888
Q ss_pred HHHhccCCHHH------HHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCC--HHHHHHHHHHHHHhhcCcc-cH
Q 003146 355 VQYLKEGSDMS------KILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGK--LEAKLSALNALQNLSLLAE-NI 424 (844)
Q Consensus 355 v~~L~~~~~~~------~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~-~~ 424 (844)
++-+..-+..+ ..+..+.+.|+... ++.+..+.+.|.+.-|+.-+.... ...+..|...|.-+..+.. ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 77665433322 34566677777664 577888888887777766454432 2457788888888877654 77
Q ss_pred HHHHHcCChHHHHHHhhc---cCC---cchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhccCChHHHHHHHHH
Q 003146 425 QRLVISGIVSPLLQLLFS---VTS---VLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHA 495 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~---~~~---~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 495 (844)
...-.-.+|..+++-+.- +++ +.....++--..||.+...+ +......+++ +..++.......+..++++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-Lm~Lmlr~Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-LMNLMLREKKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-HHHHHHHHHHHhhhhHHHH
Confidence 777778888888776642 221 11223344444455444433 2333444444 3334333355677889999
Q ss_pred HHHhhcCCChhHHHHHHHhCCcHHHHHHHhc
Q 003146 496 LNSIAAHSSASNVRRKMKENGAIHLLLPFLM 526 (844)
Q Consensus 496 L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~ 526 (844)
|-....+.+...++..+.+.+|...+..+.-
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 9888887755688888888888888777644
No 120
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.45 Score=52.80 Aligned_cols=285 Identities=13% Similarity=0.147 Sum_probs=151.9
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHc
Q 003146 351 FKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVIS 430 (844)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~ 430 (844)
.|-|-.+|++.-+.+...+|+.+..++..+-.-..+ ..++..|-.+|.+.....|..|.+.|..|+.....+-....
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN- 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN- 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC-
Confidence 344556777777788889999988887644111111 24567788888888888899999999999964322111111
Q ss_pred CChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHh----hccCChHHHHHHHHHHHHhhcCCChh
Q 003146 431 GIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSL----LNLCSPTIQYHLLHALNSIAAHSSAS 506 (844)
Q Consensus 431 g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~l----L~~~~~~~~~~a~~~L~~L~~~~~~~ 506 (844)
+-+-.++.+.+. .+...|...|..-. ++..|..|+.+ +.+-+...+--++.++..||-..+.+
T Consensus 343 ---~evEsLIsd~Nr---~IstyAITtLLKTG-------t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 343 ---KEVESLISDENR---TISTYAITTLLKTG-------TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred ---hhHHHHhhcccc---cchHHHHHHHHHcC-------chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 223334444332 13334444443321 12233344433 33334444445566666666554211
Q ss_pred HHHHHHHhCCcHHHHHHH-hccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 003146 507 NVRRKMKENGAIHLLLPF-LMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSN 585 (844)
Q Consensus 507 ~~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~ 585 (844)
. .. .+.-|... ++.|.-+-+..+..++..+....|+. .+..+..|..++.+..-.+...-..++|+.
T Consensus 410 ~--~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s-----kEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 410 K--LS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS-----KERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred H--HH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH-----HHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 1 11 23333332 33445566666666665554443322 233566666666655554544444555554
Q ss_pred CCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC-CHHHHHHHHHcCCHHHHHHHhccCC
Q 003146 586 LPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS-DKKLQQYSVQHGVIRLLVKLLSSES 664 (844)
Q Consensus 586 L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~ 664 (844)
=....++-.. .+..+.+-+--.+. -++-.|+.+|..|+... ++-.+ .-+...|-+.+++.+
T Consensus 478 EgP~a~~P~~------yvrhIyNR~iLEN~-------ivRsaAv~aLskf~ln~~d~~~~-----~sv~~~lkRclnD~D 539 (898)
T COG5240 478 EGPRAKTPGK------YVRHIYNRLILENN-------IVRSAAVQALSKFALNISDVVSP-----QSVENALKRCLNDQD 539 (898)
T ss_pred cCCCCCCcch------HHHHHHHHHHHhhh-------HHHHHHHHHHHHhccCccccccH-----HHHHHHHHHHhhccc
Confidence 3211111011 11122221111110 24558888998877653 33222 234467888999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 003146 665 VVAKSSASISLAQLSQN 681 (844)
Q Consensus 665 ~~vk~~Aa~aL~~ls~~ 681 (844)
.++|.+|+.+|.++-..
T Consensus 540 deVRdrAsf~l~~~~~~ 556 (898)
T COG5240 540 DEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999998743
No 121
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.53 Score=54.03 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHH
Q 003146 487 TIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDI 566 (844)
Q Consensus 487 ~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~l 566 (844)
+.|...++++...+... +++... +++.|++++.+.++..-......++......++ ++...+..|+..
T Consensus 374 ~yRqlLiktih~cav~F--p~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-----Lr~~ii~~l~~~ 441 (948)
T KOG1058|consen 374 KYRQLLIKTIHACAVKF--PEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-----LRASIIEKLLET 441 (948)
T ss_pred HHHHHHHHHHHHHhhcC--hHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHh
Confidence 34667777777766554 333332 588999999998887655555555443332221 222244455554
Q ss_pred hcCCCCHHHHHHHHHHHhcCCCCCHH
Q 003146 567 TLSSTSENEKAAAVGILSNLPVSNKK 592 (844)
Q Consensus 567 L~~~~~~~~~~~a~~~L~~L~~~~~~ 592 (844)
+..-.+...-..|+++++.-+....+
T Consensus 442 ~~~irS~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 442 FPQIRSSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred hhhhcccccchhHHHHHHHHHhhhHH
Confidence 44334445556777777776665543
No 122
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.61 E-value=0.05 Score=50.94 Aligned_cols=88 Identities=14% Similarity=0.325 Sum_probs=68.9
Q ss_pred HHHhhHHHHHHHHHhHhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHH
Q 003146 32 YEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSNS---------RLVSKQMEDLTQD 102 (844)
Q Consensus 32 ~~~~~~~~l~~~~~~l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~s---------~~i~~~~~~~~~~ 102 (844)
.-|..+..|...++.|.|+++||+..+..++. +-..=++.|...|++++.|++.|+. .....+++++..+
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~-~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~ 109 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELDR-PRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARKIEELEES 109 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHHHHHHHHH
Confidence 34677888999999999999999876665644 3377899999999999999999982 2688888899998
Q ss_pred HHHhhhh-hhhhhhccchhHHH
Q 003146 103 MGRSLGL-VLFASVELEVDVKE 123 (844)
Q Consensus 103 ~~~~l~~-~~~~~~~~~~~~~e 123 (844)
|.+.++. +|+ ....|+++
T Consensus 110 l~~f~~v~~q~---~~~~D~~~ 128 (147)
T PF05659_consen 110 LRRFIQVDLQL---HQLRDIKE 128 (147)
T ss_pred HHHHhcchhHH---HHHHHHHH
Confidence 8888874 564 34444444
No 123
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.59 E-value=1.2 Score=50.06 Aligned_cols=354 Identities=18% Similarity=0.193 Sum_probs=186.2
Q ss_pred hHHHHHHhhcCCH---HHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---
Q 003146 392 IEPLVRMFRVGKL---EAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--- 465 (844)
Q Consensus 392 i~~Lv~lL~~~~~---~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--- 465 (844)
+|.|...|.+.+. ...+..+.+|..+|.+++.-..++- ..+..|-....... ........+..|.++....
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~--~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSES--SSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhcccc
Confidence 4677888877655 5577889999999988775444432 23333333333222 1223455555666554432
Q ss_pred h------hhcccchHHHHHHhhccC-------ChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc------
Q 003146 466 S------ILVNKDVAQQMLSLLNLC-------SPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM------ 526 (844)
Q Consensus 466 ~------~l~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~------ 526 (844)
. ...+...++.+.++.-.. ++.+-+.+.+++..++++-+.+...+. +..++.+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~------~~~~~~lf~~~~~~~ 151 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI------LDELYSLFLSPKSFS 151 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH------HHHHHHHHccccccC
Confidence 1 111223566666654321 245556666666666666543333222 334444332
Q ss_pred ----c------CCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 003146 527 ----E------TNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATEL 596 (844)
Q Consensus 527 ----~------~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 596 (844)
. .....-.-...++..+.++..-. -....+..++.+.....++..+..++.+++.+...-+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---- 223 (415)
T PF12460_consen 152 PFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---- 223 (415)
T ss_pred CCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC----
Confidence 1 11122222334444443332200 01125667777777667777777777777666432111
Q ss_pred HHhCCChHHHHHHhhcC--CCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 003146 597 LKKTNLLPSLISAATSS--TITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASIS 674 (844)
Q Consensus 597 l~~~~~v~~L~~ll~~~--~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~a 674 (844)
.+.+..+++.+... ............+-.+|....+....++.. ...+..|+++|.+ +.+...|+.+
T Consensus 224 ---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~--~~~g~~aA~~ 292 (415)
T PF12460_consen 224 ---DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS--PELGQQAAKA 292 (415)
T ss_pred ---hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC--hhhHHHHHHH
Confidence 11122222222111 111111122233334444433333333321 1345667777776 6778889999
Q ss_pred HHHHhhcCccccccccccceecCCCCCCcCcccccccCc----ccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhh
Q 003146 675 LAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFV----KSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASL 750 (844)
Q Consensus 675 L~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~----~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L 750 (844)
++-+..+.+.... . ...|.+ ++.+. ...+|.|++..++.+.+.+...+.||..+
T Consensus 293 f~il~~d~~~~l~----------~---------~~~a~vklLykQR~F---~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 293 FGILLSDSDDVLN----------K---------ENHANVKLLYKQRFF---TQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HhhHhcCcHHhcC----------c---------cccchhhhHHhHHHH---HHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 9998877443210 0 001111 11111 12568888888888888999999999999
Q ss_pred hccccchhhhHHHHhcCC-hHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 751 LQDETWESGSNYLAKLSG-TQAIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 751 ~~~~~~~~~~~~i~~~g~-i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
...-+ .+ -.+-+.+- +|-+++-|..+++.++..++.+|..++...
T Consensus 351 l~~vP-~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 351 LKNVP-KS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HhhCC-HH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 98542 11 11222222 555678888889999999999998887653
No 124
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.4 Score=52.09 Aligned_cols=484 Identities=14% Similarity=0.081 Sum_probs=226.6
Q ss_pred hCcHHHHHHh-hcCCChHHHHHHHHHHHHhccCCc------------c---HHHHHHcC---ChHHHHHHhc-cCCHHHH
Q 003146 307 QGCIVMLVSM-LSGNDPVASHDAGKLLNALSSNTQ------------N---ALHMAEAG---YFKPLVQYLK-EGSDMSK 366 (844)
Q Consensus 307 ~g~i~~Lv~l-L~s~d~~~~~~A~~~L~nLs~~~~------------~---~~~i~~~g---~i~~Lv~~L~-~~~~~~~ 366 (844)
.|+-|.|+.+ |+++++..+..|..++..+-...+ + -..+.... .-.-|+..|. +.++.+.
T Consensus 45 ~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~ 124 (728)
T KOG4535|consen 45 ELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTV 124 (728)
T ss_pred CCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 6677777765 677788777777666655532221 1 11111111 1122333333 3345566
Q ss_pred HHHHHHHHHhhcCc-hhhhhhhh-cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccC
Q 003146 367 ILMATALSRMELTD-QSRASLGE-DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVT 444 (844)
Q Consensus 367 ~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~ 444 (844)
..+..+|.+|..+. ..+-.++- ......+-.+.++.++.++..++..+..+.+...-- |-+-.++.-..
T Consensus 125 tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~---------pei~~~~~~~~ 195 (728)
T KOG4535|consen 125 TQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPL---------PEVQLLLQQPC 195 (728)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCC---------HHHHHHhcCCC
Confidence 67888899988764 33433322 234445556667888888888888887776543221 11111221110
Q ss_pred ----------CcchhhHHH-HHHHHHHHhcChh-------h-----------hcccch-HHHHHHhhcc--CChHHHHHH
Q 003146 445 ----------SVLMTLREP-ASAILARIAQSES-------I-----------LVNKDV-AQQMLSLLNL--CSPTIQYHL 492 (844)
Q Consensus 445 ----------~~~~~l~~~-a~~~L~~l~~~~~-------~-----------l~~~~~-i~~Lv~lL~~--~~~~~~~~a 492 (844)
+.+...++- +-..+..+..+++ . ...+.. .......+.+ .-..+|-.|
T Consensus 196 s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~ 275 (728)
T KOG4535|consen 196 SSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEA 275 (728)
T ss_pred ccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHH
Confidence 000111110 0011112211110 0 000000 1111111211 123478888
Q ss_pred HHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH-----HHHHHhchhhHHHHH---
Q 003146 493 LHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE-----ELAEQLGDKYLNILV--- 564 (844)
Q Consensus 493 ~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~-----~i~~~l~~~~l~~Lv--- 564 (844)
..+|..|+++- .-.+....+ ....+..-+.+..+.++..++.++..+...... ........+.+....
T Consensus 276 ~qvl~~~a~~~--~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~ 351 (728)
T KOG4535|consen 276 LQVLTLLARYF--SMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNG 351 (728)
T ss_pred HHHHHHHHHHH--HHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccC
Confidence 99998888774 222222222 233444446677889999999999877543220 000000001111111
Q ss_pred ---HHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchh-HHHHHHHHHHhccCCCC
Q 003146 565 ---DITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPW-LVESVAGILIRFTDPSD 640 (844)
Q Consensus 565 ---~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~-l~e~a~~aL~~l~~~~~ 640 (844)
...=++.-+..+..+|-++.++....-. - ...|-=.....++...+ .. .+. +.-.|..++.-+.- .
T Consensus 352 p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~---~-lpn~~~T~~~~Fl~GC~-d~---~~~lv~~aA~Ra~~VyVL--H 421 (728)
T KOG4535|consen 352 PLPRALYDSEHPTLQASACDALSSILPEAFS---N-LPNDRQTLCITFLLGCN-DS---KNRLVKAAASRALGVYVL--H 421 (728)
T ss_pred CChhhhhhhcCCCchhHHHHHHhhcCchhhc---C-CCCcchhhhHHHHhccc-ch---HHHHHHHHHHhhceeEEe--c
Confidence 0000111223345566666666331000 0 00000001111111111 00 011 12233333332221 1
Q ss_pred HHH-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHh
Q 003146 641 KKL-QQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCL 719 (844)
Q Consensus 641 ~~~-~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l 719 (844)
+-. +....-......+...|.+....+|..|+|+++|++.. +|.+.=++++..|=
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA------------------------L~~~~Ps~~s~~eR 477 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA------------------------LIVNMPTPDSFQER 477 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH------------------------HHcCCCCchHHHHH
Confidence 111 11223334555666777787889999999999999852 22222222222222
Q ss_pred hhcCCchHHHHhh---cCCChhhHHHHHHHHHhhhcccc-chhhhHHHHhcCChHHHH-HHhhcCCHHHHHHHHHHHHHH
Q 003146 720 VKAGAVSPLIQVL---EGKEREADETVLGALASLLQDET-WESGSNYLAKLSGTQAII-KVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 720 ~~~~ai~~Lv~lL---~~~~~~v~~~A~~AL~~L~~~~~-~~~~~~~i~~~g~i~~lv-~ll~~~~~~~~~~A~~~L~~i 794 (844)
...--+..+.+.- ...++.|+..|..||.|+.+--. .++-......-|.+..++ .....++..+|=+|..++.++
T Consensus 478 ~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 478 FSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 2221222333322 23467899999999999986432 111111111222333333 222457889999999999999
Q ss_pred HhhhhhhH---hhccccchhHHhh-hhcCCCCchHHHHHHHHHHhhh
Q 003146 795 FRIEEHRV---KYGESAQVVLIDL-AQNGDSRLKPAVAKLLAQLELL 837 (844)
Q Consensus 795 ~~~~~~~~---~~~~~a~~~Lv~l-l~~~~~~~~~~aa~~L~~l~~~ 837 (844)
|+.+...= .....+=..|..| .+..+..+|..||.+|..-+..
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 98765421 1111121344444 3577899999999999865433
No 125
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.53 E-value=0.12 Score=53.16 Aligned_cols=227 Identities=12% Similarity=0.103 Sum_probs=149.4
Q ss_pred hhcCCChHHHHHHHHHHHHhccCCccHHHHH-HcCChHHHHHHhccC--CHHHHHHHHHHHHHhhcCchhhhhhhh-cCc
Q 003146 316 MLSGNDPVASHDAGKLLNALSSNTQNALHMA-EAGYFKPLVQYLKEG--SDMSKILMATALSRMELTDQSRASLGE-DGA 391 (844)
Q Consensus 316 lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~ 391 (844)
++.+=++-.+.-|+.+|.+|....+-|..+- +.-+-..+++.++.. ..+.+.+..-+++-|+.+.+..+.|-. ..-
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344456677788999999998887766654 455667788888764 567788999999999988877655544 456
Q ss_pred hHHHHHHhhcC-CHHHHHHHHHHHHHhhcC--cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC----
Q 003146 392 IEPLVRMFRVG-KLEAKLSALNALQNLSLL--AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS---- 464 (844)
Q Consensus 392 i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~--~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~---- 464 (844)
|.-|+.+.+.. ...+-+-++..+.|++.. .+....+.-.|-+.+-++.|....-..+.++...-.+=..|.++
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 77788887753 235566788889998873 24455555566566667777654332233332222221122111
Q ss_pred ------------------hh------------hhccc--chHHHHHHhhccCChH-HHHHHHHHHHHhhcCCChhHHHHH
Q 003146 465 ------------------ES------------ILVNK--DVAQQMLSLLNLCSPT-IQYHLLHALNSIAAHSSASNVRRK 511 (844)
Q Consensus 465 ------------------~~------------~l~~~--~~i~~Lv~lL~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~ 511 (844)
+. .+... ..+..|.+++....|. +-..|+.=+..+.+.. ++.+..
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~--PE~~~v 394 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS--PEINAV 394 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC--chHHHH
Confidence 10 01111 2356777777776554 3334454455555543 788899
Q ss_pred HHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 512 MKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 512 i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
+...|+=+.+..++.+++++|+..|.+++..+.
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999987653
No 126
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.50 E-value=0.11 Score=62.25 Aligned_cols=271 Identities=15% Similarity=0.126 Sum_probs=140.7
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh---hhHHHHHHhchhhH
Q 003146 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKD---VYEELAEQLGDKYL 560 (844)
Q Consensus 484 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~---~~~~i~~~l~~~~l 560 (844)
..+..+-.|+..|..++..-+.+.. -..++|.++.++.+...+||..|...|..+... .+..-.....+..+
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~-----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlf 509 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVK-----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLF 509 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHH-----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhh
Confidence 4567888999999999877543222 234799999999999999999999888765432 22111122334456
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcCCCCC---HHHHHHHHhCCChHHHHHHhhcCCCCC------CCCchhHHHHHHHH
Q 003146 561 NILVDITLSSTSENEKAAAVGILSNLPVSN---KKATELLKKTNLLPSLISAATSSTITK------THSTPWLVESVAGI 631 (844)
Q Consensus 561 ~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~l~~~~~v~~L~~ll~~~~~~~------~~~~~~l~e~a~~a 631 (844)
+.|-.++.++....++.+-+..|+.|+... .+..+.+..+|. +.+++... ......+.+.....
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~-------~n~~nset~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM-------LNDPNSETAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc-------ccCcccccccccccchHHHHHHHHHHHH
Confidence 667777765445566766666666664421 122222222221 22221100 00000111111111
Q ss_pred HHhccCCCCHHHHHHHHHc---------------CCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceec
Q 003146 632 LIRFTDPSDKKLQQYSVQH---------------GVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCV 696 (844)
Q Consensus 632 L~~l~~~~~~~~~~~i~~~---------------g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~ 696 (844)
...+....++.+++.+.+. -+++.|+.+|++.++..|..--..+.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~-------------------- 642 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV-------------------- 642 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc--------------------
Confidence 1111111111111111111 12333333343333333311111111
Q ss_pred CCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchh-hhHHHHhcCChHHHHHH
Q 003146 697 PPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWES-GSNYLAKLSGTQAIIKV 775 (844)
Q Consensus 697 ~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~-~~~~i~~~g~i~~lv~l 775 (844)
+.|..-+. .+ ++...+|.|.+-|.|+++.|...|+.+|..|...+..++ ++..| +....-+
T Consensus 643 -----gvsi~VG~-rs-------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i-----~~~v~Pl 704 (1431)
T KOG1240|consen 643 -----GVSIFVGW-RS-------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDI-----LQDVLPL 704 (1431)
T ss_pred -----ceEEEEee-ee-------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHH-----HHhhhhh
Confidence 11111110 00 245677888888999999999999999999998875432 22222 3334445
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhHhh
Q 003146 776 LESGNAKAQEKALWILERIFRIEEHRVKY 804 (844)
Q Consensus 776 l~~~~~~~~~~A~~~L~~i~~~~~~~~~~ 804 (844)
|-++|.=+|..++..+..+.+.-...+.|
T Consensus 705 L~hPN~WIR~~~~~iI~~~~~~ls~advy 733 (1431)
T KOG1240|consen 705 LCHPNLWIRRAVLGIIAAIARQLSAADVY 733 (1431)
T ss_pred eeCchHHHHHHHHHHHHHHHhhhhhhhhe
Confidence 56888889999988887775543333333
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.41 E-value=0.0051 Score=47.14 Aligned_cols=55 Identities=18% Similarity=0.055 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 003146 363 DMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNL 417 (844)
Q Consensus 363 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 417 (844)
+.+|..|+.+|++++........-.....++.|+.+|+++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578899999999886654333334468999999999999999999999999875
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.27 E-value=0.0089 Score=45.76 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003146 623 WLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQL 678 (844)
Q Consensus 623 ~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~l 678 (844)
.+++.++.+|++++.......+. ....++|.|..+|+++++.||..|+++|++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46789999999987654444332 4557899999999999999999999999975
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.15 E-value=0.043 Score=64.13 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=101.2
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHh
Q 003146 652 VIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV 731 (844)
Q Consensus 652 ~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~l 731 (844)
..|-+++.+.+.+.++|+..-.-|-+++...++ .++. ++..+.+=
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--------------------------------~~lL---avNti~kD 100 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--------------------------------LALL---AVNTIQKD 100 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--------------------------------HHHH---HHHHHHhh
Confidence 345566666777888888877777777765554 2222 56777777
Q ss_pred hcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccc-cch
Q 003146 732 LEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGES-AQV 810 (844)
Q Consensus 732 L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~-a~~ 810 (844)
++++|+.+|..|+.+++.+-..+-+.. .+.++.+.++++++.||++|+-++.++|+.... .+... ...
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~~el~~~---------~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~--l~~~~g~~~ 169 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRVKELLGN---------IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD--LYHELGLID 169 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcChHHHHHH---------HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh--hhhcccHHH
Confidence 889999999999999988766653321 478888889999999999999999999876422 22222 235
Q ss_pred hHHhhhhcCCCCchHHHHHHHHHHh
Q 003146 811 VLIDLAQNGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 811 ~Lv~ll~~~~~~~~~~aa~~L~~l~ 835 (844)
.+..++.+.||.+...|-.+|+.+.
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 170 ILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhc
Confidence 7778888999999988888887664
No 130
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.043 Score=60.07 Aligned_cols=188 Identities=18% Similarity=0.134 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCH
Q 003146 574 NEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVI 653 (844)
Q Consensus 574 ~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i 653 (844)
....+++-.|-.++.+-.-+|--+.+..++..|+++|.++..... -.+..+++++..+- ...+..+.+.|+|
T Consensus 404 l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~-------~~~t~~icn~vv~f-snL~~~fL~~~iI 475 (743)
T COG5369 404 LDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIE-------FPDTIDICNKVVPF-SNLGAGFLEKSII 475 (743)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceee-------ccchhhhhheeeec-cchHHHHHHhhHH
Confidence 334567777888877777778889999999999999998775432 25667778877653 2346778899999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc
Q 003146 654 RLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE 733 (844)
Q Consensus 654 ~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~ 733 (844)
..|++++.+.+...|+...|.+.++-.+..+ +..|.+...-.+..++.+..
T Consensus 476 dvl~~~v~sKDdaLqans~wvlrHlmyncq~-----------------------------~ekf~~Lakig~~kvl~~~N 526 (743)
T COG5369 476 DVLVNLVMSKDDALQANSEWVLRHLMYNCQK-----------------------------NEKFKFLAKIGVEKVLSYTN 526 (743)
T ss_pred HHHHHHhhcchhhhhhcchhhhhhhhhcCcc-----------------------------hhhhhhHHhcCHHHHHHHhc
Confidence 9999999988889999999999998876554 33466777778899999999
Q ss_pred CCChhhHHHHHHHHHhhhccccc-hhhhHHHHhcCChH----HHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 734 GKEREADETVLGALASLLQDETW-ESGSNYLAKLSGTQ----AIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 734 ~~~~~v~~~A~~AL~~L~~~~~~-~~~~~~i~~~g~i~----~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
++...|++..+..|-|+..+... ++...+..+..--. .+++-++..+|-.-...+..|-++....
T Consensus 527 Dpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 527 DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACD 596 (743)
T ss_pred CcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhcc
Confidence 99999999999999999986532 33333333332222 2444445666665555666666665543
No 131
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=6.3 Score=49.36 Aligned_cols=301 Identities=14% Similarity=0.071 Sum_probs=144.5
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhh
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLG 387 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (844)
.||.|.+.=.++|+.+|. |..-++|--. +.++...-.-...++.|+.-|.+....+|+.++-+|..|-.....-...-
T Consensus 999 LIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 567777766678887775 4566666544 33433332234566677777777778899999999998877643322211
Q ss_pred h-cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh
Q 003146 388 E-DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES 466 (844)
Q Consensus 388 ~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~ 466 (844)
. ...-..+.+..++-...+|++|-++..-|+. .++.+ .+.... . .+-.++.+
T Consensus 1078 ~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK---------------l~vr~-~d~~~~-~----~~~~~l~~------ 1130 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKESVREAADKAARALSK---------------LCVRI-CDVTNG-A----KGKEALDI------ 1130 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhh-cccCCc-c----cHHHHHHH------
Confidence 1 1222233333344445566665444333321 01111 111110 1 11111111
Q ss_pred hhcccchHHHHHH--hhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHH-HHHHHHHHHh
Q 003146 467 ILVNKDVAQQMLS--LLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIR-AAALNLVCTL 543 (844)
Q Consensus 467 ~l~~~~~i~~Lv~--lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~-~~A~~~L~~l 543 (844)
.+|.|++ .+ +.-+++|..++.++..|..+.+ .....- -+..++.|......-.+.+- .-++++ .+.
T Consensus 1131 ------iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg-~~lkP~--~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~ 1199 (1702)
T KOG0915|consen 1131 ------ILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSG-KELKPH--FPKLIPLLLNAYSELEPQVLNYLSLRL-INI 1199 (1702)
T ss_pred ------HHHHHhccCcc-cchHHHHHHHHHHHHHHHHhch-hhhcch--hhHHHHHHHHHccccchHHHHHHHHhh-hhh
Confidence 1222222 12 4557888899999999987764 221111 12245666665555444432 222222 111
Q ss_pred hhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchh
Q 003146 544 SKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPW 623 (844)
Q Consensus 544 s~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~ 623 (844)
..+ .+..+-.-.. .+++... ..-.++.++ |..+ =...+|.+.++++.+-.-+++
T Consensus 1200 ----e~e--------alDt~R~s~a-ksspmme-Ti~~ci~~i---D~~v-----Leelip~l~el~R~sVgl~Tk---- 1253 (1702)
T KOG0915|consen 1200 ----ETE--------ALDTLRASAA-KSSPMME-TINKCINYI---DISV-----LEELIPRLTELVRGSVGLGTK---- 1253 (1702)
T ss_pred ----HHH--------HHHHHHHhhh-cCCcHHH-HHHHHHHhh---hHHH-----HHHHHHHHHHHHhccCCCCcc----
Confidence 111 1111110000 0111111 111223333 2221 134578999999876432222
Q ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 003146 624 LVESVAGILIRF----TDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNS 682 (844)
Q Consensus 624 l~e~a~~aL~~l----~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~ 682 (844)
-.++..+.-+ .....|..- ..+..+...+++-++.+++.-+.|.+.|..-+
T Consensus 1254 --vg~A~fI~~L~~r~~~emtP~sg------Kll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1254 --VGCASFISLLVQRLGSEMTPYSG------KLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred --hhHHHHHHHHHHHhccccCcchh------HHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 1333333322 222222211 23445556667788999999999999988643
No 132
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=4 Score=47.12 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCchHHHHh-hcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHH
Q 003146 723 GAVSPLIQV-LEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEKALWILERIF 795 (844)
Q Consensus 723 ~ai~~Lv~l-L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~~i~ 795 (844)
++|..|+.. .++.|++||.+|..||+-+..... ...+..+.+| ++-|+-||--|+.+|+-.+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-----------~~~~s~V~lLses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-----------EQLPSTVSLLSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh-----------hhchHHHHHHhhhcChhhhhhHHHHHhhhh
Confidence 466777766 568889999999999987775441 1467788888 7788889888887776443
No 133
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.1 Score=61.59 Aligned_cols=205 Identities=14% Similarity=0.098 Sum_probs=144.2
Q ss_pred hCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC----CHHHHHHHHHHHHHccCC-C
Q 003146 223 EAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR----DVEEQREAVGLLLDLSDL-P 297 (844)
Q Consensus 223 ~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~----~~~~~~~A~~~L~~Ls~~-~ 297 (844)
.-|+.|-.+++|.|+-.+.+..-+.+=..+-.-++.....+++.++-..+++.|.. +.+-|..|+..|..+..+ .
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 45789999999999877777655444444433445555566666666666777765 235666788888888775 5
Q ss_pred hhHHHHhhhhCcHHHHHHhhcCC-ChHHHHHHHHHHHHhc-cCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 298 AVWRRIGRIQGCIVMLVSMLSGN-DPVASHDAGKLLNALS-SNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSR 375 (844)
Q Consensus 298 ~~~~~i~~~~g~i~~Lv~lL~s~-d~~~~~~A~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 375 (844)
.....+.+ .+.|..-...|+++ .+-.+.=.+-+|..|= ..++.|-.-++.++.+.|+..|++.-+++|..|..+|+.
T Consensus 590 lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 590 LGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 55666766 78888888888875 5666666666777774 466677777788999999999999999999999889988
Q ss_pred hhcC-----chhhhhh-----------hhcCchH----HHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHH
Q 003146 376 MELT-----DQSRASL-----------GEDGAIE----PLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLV 428 (844)
Q Consensus 376 Ls~~-----~~~~~~i-----------~~~g~i~----~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~ 428 (844)
+-.+ ++....+ .-...++ +++.+++++++-++...+.+|..+.....+.-..+
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 7553 2222222 1122333 78888899999999888888888876655443333
No 134
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.97 E-value=2.1 Score=46.78 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhh----h--HHHHHHhchhhHH
Q 003146 488 IQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDV----Y--EELAEQLGDKYLN 561 (844)
Q Consensus 488 ~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~----~--~~i~~~l~~~~l~ 561 (844)
++..|.+++.-+.-|++.... ..--..+...+...+.+..-..|.++++.+.+++..- + +...+....-.+.
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d--~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQD--VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHHhhceeEEeccchhhh--HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence 566777777666666532222 2223345566677777777789999999999886531 1 1122222111222
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHH----HHHHhhcCCCCCCCCchhHHHHHHHHHHhc
Q 003146 562 ILVDITL--SSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPS----LISAATSSTITKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 562 ~Lv~lL~--~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~----L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l 635 (844)
.+.+.-. +.+...++..+..+|+|+. +.-+.+.+.+.-.. ..+++.. -.......++=+++.+++|+
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnll----Qvlq~i~~~~~~e~~~~~~~~l~~~---v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLL----QFLQPIEKPTFAEIIEESIQALIST---VLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHH----HHHHHhhhccHHHHHHHHHHhcccc---eecccccccchHHHHHHHHh
Confidence 3332211 2234577788888888873 22232222221111 1111111 01111123555999999998
Q ss_pred cCCCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhh
Q 003146 636 TDPSDKKLQQYSVQHGVIRLLVKLLSS-ESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 636 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vk~~Aa~aL~~ls~ 680 (844)
-....-..+..-...-..|.|..++.+ .+.++|.+||.+|..-+.
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 764322112111122356788888865 589999999999886553
No 135
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.80 E-value=0.56 Score=56.65 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc----CCccHHHHHHcCChHHHH
Q 003146 280 VEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS----NTQNALHMAEAGYFKPLV 355 (844)
Q Consensus 280 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~----~~~~~~~i~~~g~i~~Lv 355 (844)
.+.+..|+..|..|+..-..-..+ ..++|.++.++.++++++|..|+.+|..+-. -+.+-..+.-.=.+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 356778999999998753322222 4589999999999999999999888876642 122222233334566666
Q ss_pred HHhcc-CCHHHHHHHHHHHHHhhcCch----hhhhhhhc------------------------CchH-HHHHHhhcCCHH
Q 003146 356 QYLKE-GSDMSKILMATALSRMELTDQ----SRASLGED------------------------GAIE-PLVRMFRVGKLE 405 (844)
Q Consensus 356 ~~L~~-~~~~~~~~aa~~L~~Ls~~~~----~~~~i~~~------------------------g~i~-~Lv~lL~~~~~~ 405 (844)
.++.+ ...-+|..-|..|..|+.... .-..+... ..+. ..+.+|.+.++-
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~ 593 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPI 593 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchH
Confidence 66666 334456555555555543210 00000000 0111 223444455556
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhh
Q 003146 406 AKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLL 481 (844)
Q Consensus 406 ~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL 481 (844)
+|+.-+..|.-||..-.-.+ .+--+++.|+.+|.+.+ ..+|-. .+-+++.-. ..-.++..+|.|.+-|
T Consensus 594 Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkD---w~LR~a---FfdsI~gvsi~VG~rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKD---WRLRGA---FFDSIVGVSIFVGWRSVSEYLLPLLQQGL 665 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCcc---HHHHHH---HHhhccceEEEEeeeeHHHHHHHHHHHhc
Confidence 66665566666653210000 01124566777776553 233322 222222111 0112445677777788
Q ss_pred ccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh
Q 003146 482 NLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKD 546 (844)
Q Consensus 482 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~ 546 (844)
.++.+.+-..|+++|..||..+- .++. .--..++-...+|-+++.-+|+.++..+....+.
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~l---l~K~-~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLGL---LRKP-AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhcc---cchH-HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 88889999999999999998741 1111 1112466677788899999999999999877654
No 136
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.78 E-value=0.51 Score=44.44 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=94.8
Q ss_pred HHHHHcCChHHHHHHhhccCC---cchhhHHHHHHHHHHHhcChhh---hcccchHHHHHHhhccC--ChHHHHHHHHHH
Q 003146 425 QRLVISGIVSPLLQLLFSVTS---VLMTLREPASAILARIAQSESI---LVNKDVAQQMLSLLNLC--SPTIQYHLLHAL 496 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~~---~~~~l~~~a~~~L~~l~~~~~~---l~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L 496 (844)
..+++.|+++.|+.++.++.. ........++.++..|..++.+ ..+...|..++..++.. ++.+.+.++.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 467888999999999988763 0123456788888888887532 23456788888888764 477999999999
Q ss_pred HHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 497 NSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 497 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
-++..++ +.....+.++=-++.|+..|+.++++++.+|..++..|-...+
T Consensus 85 Es~Vl~S--~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNS--PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCC--HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999875 5556677777789999999999999999999999987755444
No 137
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.75 E-value=0.85 Score=46.45 Aligned_cols=200 Identities=17% Similarity=0.184 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHHHhh-------cCCC--hHHH---HHHHHHHHHhccCCccHHHH
Q 003146 279 DVEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLVSML-------SGND--PVAS---HDAGKLLNALSSNTQNALHM 345 (844)
Q Consensus 279 ~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL-------~s~d--~~~~---~~A~~~L~nLs~~~~~~~~i 345 (844)
+++.|+.|+..|..--.. ++....+....|.+..|++=+ +.+. +... -+|...|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 456788888777764332 556666666678888876532 2222 2222 36666777778999999999
Q ss_pred HHcCChHHHHHHhccCC-----HHHHHHHHHHHHHhhcCc--hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 003146 346 AEAGYFKPLVQYLKEGS-----DMSKILMATALSRMELTD--QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLS 418 (844)
Q Consensus 346 ~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 418 (844)
.++...--|..+|+..+ +..|..+.++++.|...+ +.-..+...+.+|..++.++.|+.-.|..|.-.+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99886655666665442 345778889999988754 45556667899999999999999999999988887776
Q ss_pred cCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHH
Q 003146 419 LLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS 498 (844)
Q Consensus 419 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 498 (844)
.++..-..+. ... +. -.+...+|.++ +..+.+..++..-.+.+++-..
T Consensus 168 ~dd~GL~yiC------------~t~----eR-f~av~~vL~~m---------------V~~l~~~pS~RLLKhIIrCYlR 215 (262)
T PF04078_consen 168 LDDVGLNYIC------------QTA----ER-FFAVAMVLNKM---------------VEQLVKQPSPRLLKHIIRCYLR 215 (262)
T ss_dssp HSHHHHHHHT------------SSH----HH-HHHHHHHHHHH---------------HHHHHHS--HHHHHHHHHHHHH
T ss_pred cchhHHHHHh------------cCH----HH-HHHHHHHHHHH---------------HHHHccCCChhHHHHHHHHHHH
Confidence 5543211111 000 01 12233333332 2234556788888999999999
Q ss_pred hhcCCChhHHHHHHH
Q 003146 499 IAAHSSASNVRRKMK 513 (844)
Q Consensus 499 L~~~~~~~~~~~~i~ 513 (844)
|+.++ ..+..+.
T Consensus 216 Lsdnp---rar~aL~ 227 (262)
T PF04078_consen 216 LSDNP---RAREALR 227 (262)
T ss_dssp HTTST---THHHHHH
T ss_pred HccCH---HHHHHHH
Confidence 99884 4555554
No 138
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.72 E-value=0.19 Score=47.22 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=93.1
Q ss_pred hhhhcCchHHHHHHhhcCCH------HHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHH
Q 003146 385 SLGEDGAIEPLVRMFRVGKL------EAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAIL 458 (844)
Q Consensus 385 ~i~~~g~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L 458 (844)
.+...||+..|++++.++.. .....++.++..|-.+.-.....+....|...+........ +..+...|+.+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~-d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM-DASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc-cchHHHHHHHHH
Confidence 34567899999999999873 55667888888888765555666677778888888875553 245778999999
Q ss_pred HHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC
Q 003146 459 ARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS 504 (844)
Q Consensus 459 ~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 504 (844)
.+++.+. ..+..+=.++.|+..|..++++++.+++..+-.|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999886 244555568999999999999999999999888876653
No 139
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.71 E-value=3.5 Score=46.40 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=116.8
Q ss_pred ChHHHHHHhccC-CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHh-hcCCHHHHHHHH----HHHHHhhc-Ccc
Q 003146 350 YFKPLVQYLKEG-SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMF-RVGKLEAKLSAL----NALQNLSL-LAE 422 (844)
Q Consensus 350 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~----~aL~nLs~-~~~ 422 (844)
.+..++.+..+. ++..+..++..++.+...-..-..+ ...+..+..-+ ...+...+..+. |....|.. ++.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 566677766554 3556777777777776541110000 12223333322 222333344443 33333332 222
Q ss_pred cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC-hhh-----------hccc----chHHHHHHhhccCCh
Q 003146 423 NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS-ESI-----------LVNK----DVAQQMLSLLNLCSP 486 (844)
Q Consensus 423 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~-~~~-----------l~~~----~~i~~Lv~lL~~~~~ 486 (844)
... ..+..|+++|.+.. +...++..+.-+..+ +.. +... ..++.|++-.+..+.
T Consensus 268 ~~~-----~~~~~L~~lL~~~~-----~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 268 LAT-----ELLDKLLELLSSPE-----LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred hHH-----HHHHHHHHHhCChh-----hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 212 23456788776632 557888888888777 322 2222 236677777777777
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 487 TIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 487 ~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
..+.+.+.+|.++..+-+...+...+. ..+|.|++-|..++++++..+..+|..+..+.++.+.+++.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 789999999999998865444433333 38999999999999999999999999998877666655443
No 140
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=7.6 Score=47.51 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=129.4
Q ss_pred cCCChHHHHHHHHHHHHhccCCccHHHHHH--cCChHHHHHHhccCCHHHHHHHHHHHHHhhcC--chhhhhhhhcCchH
Q 003146 318 SGNDPVASHDAGKLLNALSSNTQNALHMAE--AGYFKPLVQYLKEGSDMSKILMATALSRMELT--DQSRASLGEDGAIE 393 (844)
Q Consensus 318 ~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~ 393 (844)
++.++.+|..+-..|..|+..+.......+ .-....|..-+++.....+.....+|..|-.. .+....+. ..||
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 456889999999999999876443322221 11222333344444444454455555444321 23344333 2455
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcC------ChHHHHHHhhccCCcchhhHHHHH--HHHHHHhcCh
Q 003146 394 PLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISG------IVSPLLQLLFSVTSVLMTLREPAS--AILARIAQSE 465 (844)
Q Consensus 394 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g------~v~~Lv~lL~~~~~~~~~l~~~a~--~~L~~l~~~~ 465 (844)
-++-.+++.+...++.|..+|..++. .....+.| .|...+..+..+--... .+..+. -.+..+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~-~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDS-TRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHH
Confidence 55555588888889999999998883 11111222 34445555444311001 112222 2222232222
Q ss_pred hhhccc----chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 003146 466 SILVNK----DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVC 541 (844)
Q Consensus 466 ~~l~~~----~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~ 541 (844)
.-..+. +.+..+...|.+++++++..|++.+.-++...+ +..-.-..+..++.+..++++.+..+|.+...++.
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p--e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP--EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC--HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111222 345556667788999999999999999988763 33222223347899999999999999999999998
Q ss_pred Hhhhhhh
Q 003146 542 TLSKDVY 548 (844)
Q Consensus 542 ~ls~~~~ 548 (844)
.|.+..+
T Consensus 895 kLirkfg 901 (1176)
T KOG1248|consen 895 KLIRKFG 901 (1176)
T ss_pred HHHHHhC
Confidence 8876555
No 141
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.57 E-value=0.27 Score=50.68 Aligned_cols=258 Identities=15% Similarity=0.137 Sum_probs=138.5
Q ss_pred ccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhC-CcHHHHHHHhcc--CCHHHHHHHHHHHHHhhhhhhHHHHHHhc--
Q 003146 482 NLCSPTIQYHLLHALNSIAAHSSASNVRRKMKEN-GAIHLLLPFLME--TNANIRAAALNLVCTLSKDVYEELAEQLG-- 556 (844)
Q Consensus 482 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~--~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-- 556 (844)
..-++-++.-|+++|.++... .++|..+.-+ ..-..++.++++ +..+++....-+++.++-. + .+++.+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~---~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~-~~aqdi~K~ 233 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD---VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-K-ECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-H-HHHHHHHHH
Confidence 333455788899999999877 6777776644 456677888776 4457888999999888643 2 2222222
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH-HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhc
Q 003146 557 DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNK-KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 557 ~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l 635 (844)
.+.+..|+.+.+....+.+-..+++++.|+....+ .....+.-.|-+..-++.|..+.-
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erky-------------------- 293 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKY-------------------- 293 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCC--------------------
Confidence 12556677777654455566778888888866322 222222223322233333322110
Q ss_pred cCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH--HHHHHhhcCcccccc-ccccceecCCCCCCcCcccccccC
Q 003146 636 TDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASI--SLAQLSQNSLSLRKS-KISKWLCVPPSADAFCEVHDGYCF 712 (844)
Q Consensus 636 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~--aL~~ls~~~~~~~~~-~~~~~~~~~~~~~~~c~~h~~~~~ 712 (844)
.|.+++. -|..+...|..++ |..... -+..|-.+--.-+.+ ....||.-
T Consensus 294 ---sDEel~~------di~~i~s~l~~~~---k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~---------------- 345 (432)
T COG5231 294 ---SDEELVI------DIERIRSRLVQNT---KKLCIFDNYLNELDSGRLEWSPYHHKKDFWST---------------- 345 (432)
T ss_pred ---ChHHHHH------HHHHHHHHHHhhh---hhhhHHHHHHHHHhhCcccCCCcccccCchhh----------------
Confidence 1222221 1122222222111 111111 111111100000000 12223311
Q ss_pred cccchHhhh--cCCchHHHHhhcCCChhh-HHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHH
Q 003146 713 VKSTFCLVK--AGAVSPLIQVLEGKEREA-DETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALW 789 (844)
Q Consensus 713 ~~~~~~l~~--~~ai~~Lv~lL~~~~~~v-~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~ 789 (844)
+...+.+ -..+..|..+|+..++.+ ...|..-+..++... +++..++.+.||=+.+..++.+++++++..|+.
T Consensus 346 --N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~--PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~ 421 (432)
T COG5231 346 --NLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS--PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQ 421 (432)
T ss_pred --hHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC--chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHH
Confidence 1122222 134578888888776662 333444455444332 236778899999999999999999999999999
Q ss_pred HHHHHHh
Q 003146 790 ILERIFR 796 (844)
Q Consensus 790 ~L~~i~~ 796 (844)
+++.+..
T Consensus 422 a~q~~i~ 428 (432)
T COG5231 422 ALQTCIS 428 (432)
T ss_pred HHHHHHh
Confidence 9987753
No 142
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.53 E-value=0.2 Score=58.01 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=141.5
Q ss_pred CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHH-HhhcCchhhhhhhhcCchHHHHHHhhcCC-HHHHHHHHHHHH
Q 003146 338 NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALS-RMELTDQSRASLGEDGAIEPLVRMFRVGK-LEAKLSALNALQ 415 (844)
Q Consensus 338 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~ 415 (844)
...-+...++.|+...|+.+.....+..+..+..+|. .+....+ .....++++...+.... ......++.+|.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3444666778899999999999988888888888887 2222110 01355666666665432 233567899999
Q ss_pred HhhcCcc-cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh-----hhcccchHHHHHHhhccCChHHH
Q 003146 416 NLSLLAE-NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES-----ILVNKDVAQQMLSLLNLCSPTIQ 489 (844)
Q Consensus 416 nLs~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~-----~l~~~~~i~~Lv~lL~~~~~~~~ 489 (844)
||++..+ .++++++.-+++.+-.++...+ ..++..++..+.||..++. ++.-....+.....+........
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~---~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEEN---PALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhccc---HHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 9998754 6777887767776666655554 3478899999999999872 22224455555555655556666
Q ss_pred HHHHHHHHHhhcCCChhHHHH-HHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 490 YHLLHALNSIAAHSSASNVRR-KMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 490 ~~a~~~L~~L~~~~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
..+++++..+.... +.++. ......+...++.++.+++++++........++ .+...++.+.+.
T Consensus 645 lA~a~a~a~I~sv~--~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~ 709 (748)
T KOG4151|consen 645 LAGAGALAAITSVV--ENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIF 709 (748)
T ss_pred hhccccccchhhcc--hhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhc
Confidence 67777777665553 44555 444567888999999999999999998888774 344555555444
No 143
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.48 E-value=0.062 Score=46.54 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhhhhhhH
Q 003146 489 QYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM--ETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 489 ~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
+...++++.+||... ..++..+++.|+++.+++.+. +.+|-+|++|..++++|....++
T Consensus 3 K~~lvrlianl~~~~--~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN--KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 567889999999886 899999999999999999865 56789999999999999987663
No 144
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=1.4 Score=50.83 Aligned_cols=344 Identities=15% Similarity=0.169 Sum_probs=182.0
Q ss_pred HHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHH
Q 003146 356 QYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSP 435 (844)
Q Consensus 356 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~ 435 (844)
+=|+++++-+|-...+.|..|-..+ +. ...+|.+...|.+.+.-+|++|.-|++.+-...+ .++ ..+-..
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE~E-----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~-pDapeL 175 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKEPE-----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI-PDAPEL 175 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCcHH-----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc-CChHHH
Confidence 3455666666655555555542210 11 1345666777888889999999888876653311 111 111222
Q ss_pred HHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhh---ccCChHHHHHHHHHHHHhhcCCChhHHHHHH
Q 003146 436 LLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLL---NLCSPTIQYHLLHALNSIAAHSSASNVRRKM 512 (844)
Q Consensus 436 Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i 512 (844)
+-++|....+ +..+.+|--.|.... .+.++.-|..-+ .+-++..+...+..+...|..++ .
T Consensus 176 i~~fL~~e~D--psCkRNAFi~L~~~D-------~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p--~----- 239 (948)
T KOG1058|consen 176 IESFLLTEQD--PSCKRNAFLMLFTTD-------PERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP--A----- 239 (948)
T ss_pred HHHHHHhccC--chhHHHHHHHHHhcC-------HHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH--H-----
Confidence 2333433332 235566655544331 112222222222 22345566677777777776432 1
Q ss_pred HhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHH
Q 003146 513 KENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKK 592 (844)
Q Consensus 513 ~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 592 (844)
.....+..++.+|.+.++.++..|+..|..++.+.. .+.. +...+++++....+..++.-..--|..+...+..
T Consensus 240 ~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~ 313 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK 313 (948)
T ss_pred HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence 123368889999999999999999988888865432 2211 2233444444344444444333334444322222
Q ss_pred HHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHh-----c------
Q 003146 593 ATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLL-----S------ 661 (844)
Q Consensus 593 ~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL-----~------ 661 (844)
.- .|.+-.++.+|.+++. ++...+......+....|.+ -++++| .
T Consensus 314 il-----~~l~mDvLrvLss~dl-------dvr~Ktldi~ldLvssrNve------------div~~Lkke~~kT~~~e~ 369 (948)
T KOG1058|consen 314 IL-----QGLIMDVLRVLSSPDL-------DVRSKTLDIALDLVSSRNVE------------DIVQFLKKEVMKTHNEES 369 (948)
T ss_pred HH-----HHHHHHHHHHcCcccc-------cHHHHHHHHHHhhhhhccHH------------HHHHHHHHHHHhcccccc
Confidence 11 2334455566655553 24445555555555443322 122222 1
Q ss_pred cCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHH
Q 003146 662 SESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADE 741 (844)
Q Consensus 662 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~ 741 (844)
+.+..-|+.-..+++..+.. |.-+.+.+|+.|+..+.+.++....
T Consensus 370 d~~~~yRqlLiktih~cav~-----------------------------------Fp~~aatvV~~ll~fisD~N~~aas 414 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVK-----------------------------------FPEVAATVVSLLLDFISDSNEAAAS 414 (948)
T ss_pred ccchHHHHHHHHHHHHHhhc-----------------------------------ChHHHHHHHHHHHHHhccCCHHHHH
Confidence 12234566666666665533 3334567889999999998886655
Q ss_pred HHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHHhh
Q 003146 742 TVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 742 ~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~~i~~~ 797 (844)
..+.-+........ .. ...-|..+++-+ +-+...+-+-|+|.++..+..
T Consensus 415 ~vl~FvrE~iek~p---~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 415 DVLMFVREAIEKFP---NL----RASIIEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred HHHHHHHHHHHhCc---hH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 55544444332221 01 112355566555 335667778899999888754
No 145
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.24 E-value=3.8 Score=41.13 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=127.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHH-hh------cC-----CChHHHHHHHHHHHHh
Q 003146 269 LSALVKSLTRDVEEQREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVS-ML------SG-----NDPVASHDAGKLLNAL 335 (844)
Q Consensus 269 i~~Lv~~L~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~-lL------~s-----~d~~~~~~A~~~L~nL 335 (844)
+..++-.|.++ +.++.|+..|..--+ .++....+...-|.+..|.+ .+ +. ..+.-.-+|...|.-+
T Consensus 28 ~~~~i~~l~~~-p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcv 106 (293)
T KOG3036|consen 28 AYQLILSLVSP-PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCV 106 (293)
T ss_pred hhhHHHHhhCC-chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHH
Confidence 44444444432 244555555544322 23444444444555555544 22 11 1223345777888888
Q ss_pred ccCCccHHHHHHcCChHHHHHHhccC-----CHHHHHHHHHHHHHhhcCc--hhhhhhhhcCchHHHHHHhhcCCHHHHH
Q 003146 336 SSNTQNALHMAEAGYFKPLVQYLKEG-----SDMSKILMATALSRMELTD--QSRASLGEDGAIEPLVRMFRVGKLEAKL 408 (844)
Q Consensus 336 s~~~~~~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 408 (844)
+++++.|..+.++..---+-.+|..+ .+..|..+.++++.|..++ +.-..+...++||..++.+..|+...|.
T Consensus 107 ASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKt 186 (293)
T KOG3036|consen 107 ASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKT 186 (293)
T ss_pred hcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHH
Confidence 99999999999876555555666543 2456788999999998865 4455566789999999999999999999
Q ss_pred HHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHH
Q 003146 409 SALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTI 488 (844)
Q Consensus 409 ~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~ 488 (844)
.|.-.+..+-.++..-..+. .....- .....+|.++ +.++.+.+++..
T Consensus 187 vA~fIlqKIlldD~GL~YiC---------qt~eRF--------~av~~~L~km---------------v~~l~~~ps~Rl 234 (293)
T KOG3036|consen 187 VATFILQKILLDDVGLYYIC---------QTAERF--------SAVALVLGKM---------------VFQLVSMPSPRL 234 (293)
T ss_pred HHHHHHHHHhhccccHHHHH---------HhHHHH--------HHHHHHHHHH---------------HHHHhcCCCHHH
Confidence 99888776655443222211 111000 1112222222 334556678888
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHH
Q 003146 489 QYHLLHALNSIAAHSSASNVRRKMK 513 (844)
Q Consensus 489 ~~~a~~~L~~L~~~~~~~~~~~~i~ 513 (844)
-.+++++...||.+ +..|..+.
T Consensus 235 lKhviRcYlrLsdn---prar~aL~ 256 (293)
T KOG3036|consen 235 LKHVIRCYLRLSDN---PRARAALR 256 (293)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHH
Confidence 89999999999877 45555554
No 146
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.12 E-value=0.25 Score=42.77 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=50.5
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNL 586 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L 586 (844)
.+++++..+.+.+.+||..|+.+|+++++.....+..++.+ .+..|.+++. +.++.++.+| ..|-++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~-IF~~L~kl~~-D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE-IFDALCKLSA-DPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc-CCchhHHHHH-HHHHHH
Confidence 68999999999999999999999999998877666554433 5566667666 4677777654 444433
No 147
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.96 E-value=1.6 Score=46.78 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=109.6
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhh--cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC---cccHH
Q 003146 351 FKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGE--DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL---AENIQ 425 (844)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~~~~ 425 (844)
+...+..+.+.....|..+...+.++-........+.. ...+..+.+.++.|+..-+..|+.++.-|+.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34445555555667777777777665443322222222 34567788888888877677777777777654 23444
Q ss_pred HHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHh---cCh--hhhcccchHHHHH--Hhhcc-C---------ChHH
Q 003146 426 RLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIA---QSE--SILVNKDVAQQML--SLLNL-C---------SPTI 488 (844)
Q Consensus 426 ~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~---~~~--~~l~~~~~i~~Lv--~lL~~-~---------~~~~ 488 (844)
.+.+ ...|+|...+.+... ....+..++.+|+-++ ..+ .+......+..+. ...+. + ++.+
T Consensus 125 ei~~-~~~~~L~~~l~d~s~-~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSA-SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHH-HHHHHHHHHHhCCcc-chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 5544 467888888887653 2445555555555443 222 1110111222111 11111 1 2457
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 489 QYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 489 ~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
...|+.+-.-|...-+.......+ ...++.|..+|.+.+.+||..|..+|..|-
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 777776665555443222233222 336899999999999999999999887664
No 148
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.90 E-value=0.14 Score=50.25 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHHhccCCccHHHHHH----------------cCChHHHHHHhccC-----CH-HHHHHHHHHHHHhh
Q 003146 320 NDPVASHDAGKLLNALSSNTQNALHMAE----------------AGYFKPLVQYLKEG-----SD-MSKILMATALSRME 377 (844)
Q Consensus 320 ~d~~~~~~A~~~L~nLs~~~~~~~~i~~----------------~g~i~~Lv~~L~~~-----~~-~~~~~aa~~L~~Ls 377 (844)
++......++..|.||+..++....+.+ ..++..|+..+..| +. ..-...|.+|.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3444556677788888877776654442 23677788888763 22 23447889999999
Q ss_pred cCchhhhhhhh--cCc--hHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH---cCChHHHHHHhhcc
Q 003146 378 LTDQSRASLGE--DGA--IEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI---SGIVSPLLQLLFSV 443 (844)
Q Consensus 378 ~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~---~g~v~~Lv~lL~~~ 443 (844)
...+.|..+.+ .+. |..|+..+.+.+..-|.-++.+|.|+|-+.+....+.. .+++|.|+--|..+
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 99999999887 334 67778888888777788899999999999888888875 46777766655544
No 149
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.85 E-value=0.11 Score=50.95 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHH
Q 003146 664 SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETV 743 (844)
Q Consensus 664 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A 743 (844)
+|.+|..+..+++.|...-+++- ...++.+...|.|+++.||..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----------------------------------e~~~~~l~~~L~D~~~~VR~~a 45 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----------------------------------EPYLPNLYKCLRDEDPLVRKTA 45 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----------------------------------HhHHHHHHHHHCCCCHHHHHHH
Confidence 47899999999999987655422 2356889999999999999999
Q ss_pred HHHHHhhhccccchhhhHHHHhcCCh-HHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 003146 744 LGALASLLQDETWESGSNYLAKLSGT-QAIIKVLESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 744 ~~AL~~L~~~~~~~~~~~~i~~~g~i-~~lv~ll~~~~~~~~~~A~~~L~~i~~~ 797 (844)
+..|..|...+-.+ -.|-+ ..++..+.+.++.++..|...+..+...
T Consensus 46 l~~Ls~Li~~d~ik-------~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 46 LLVLSHLILEDMIK-------VKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHcCcee-------ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999776311 01223 6778888999999999999999888765
No 150
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.82 E-value=0.043 Score=36.27 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.9
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 003146 652 VIRLLVKLLSSESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 652 ~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~ 680 (844)
++|.+.++++++++.||..|+.+|+.+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999875
No 151
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=13 Score=43.62 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHhhhccccc-hhhhHHHHhcC-----------ChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHh
Q 003146 736 EREADETVLGALASLLQDETW-ESGSNYLAKLS-----------GTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVK 803 (844)
Q Consensus 736 ~~~v~~~A~~AL~~L~~~~~~-~~~~~~i~~~g-----------~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~ 803 (844)
+++.++.++.-|+.+..|-.. +-+.+.+.-.| =|+.+.....-.+..+|..|..+|.++....+ .
T Consensus 423 ~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~---~ 499 (865)
T KOG1078|consen 423 NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV---V 499 (865)
T ss_pred CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC---C
Confidence 455677777777777655421 11222221111 13333333334566778888888877751110 0
Q ss_pred hccccchhHHhhhhcCCCCchHHHHHHHHHHh
Q 003146 804 YGESAQVVLIDLAQNGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 804 ~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l~ 835 (844)
...+-...|..-+-+.|.++|..|.-+|..+.
T Consensus 500 l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 500 LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 01111234555556889999999999998886
No 152
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.40 E-value=0.83 Score=45.62 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=104.2
Q ss_pred HHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhc-----CCChHHHHHHHHHHHHhccCCc--cHHHHHHcCChHHHHH
Q 003146 284 REAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLS-----GNDPVASHDAGKLLNALSSNTQ--NALHMAEAGYFKPLVQ 356 (844)
Q Consensus 284 ~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-----s~d~~~~~~A~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ 356 (844)
..|...|.-++.+++.+..+.+ +..=-.|-.+|+ .+..-.+-.+.+++..|...++ ....+...+.||..++
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4677788888999999999986 555444555664 2456677888999999986544 3455568899999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhcCchhhhhhhh----cCchH----H-HHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHH
Q 003146 357 YLKEGSDMSKILMATALSRMELTDQSRASLGE----DGAIE----P-LVRMFRVGKLEAKLSALNALQNLSLLAENIQRL 427 (844)
Q Consensus 357 ~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~----~g~i~----~-Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i 427 (844)
.+..|++..+..|+.++..+-.+|.+-..+.. .-+|. . +..+.+.++++.-+.++++..+|+.++..+..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999998877754333322 22222 2 234456678889999999999999888655544
No 153
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=94.21 E-value=7 Score=42.13 Aligned_cols=266 Identities=11% Similarity=0.116 Sum_probs=139.3
Q ss_pred CchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCCH------HHHHHHHHHHHHccC-CChhHHHHhhhhCcH
Q 003146 238 KPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDV------EEQREAVGLLLDLSD-LPAVWRRIGRIQGCI 310 (844)
Q Consensus 238 ~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~~------~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i 310 (844)
+.++...++.||+|+..++...+...........+.+.+.... +.+..-++.|..|+. ....|..+..+.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4578899999999999998888877777666666666654311 122233444544433 346777777679999
Q ss_pred HHHHHhhcCC------------ChHHHHHHH---HHHHHhccCCcc--H-HHHHH----cCChHHHHHHhccC--CHHHH
Q 003146 311 VMLVSMLSGN------------DPVASHDAG---KLLNALSSNTQN--A-LHMAE----AGYFKPLVQYLKEG--SDMSK 366 (844)
Q Consensus 311 ~~Lv~lL~s~------------d~~~~~~A~---~~L~nLs~~~~~--~-~~i~~----~g~i~~Lv~~L~~~--~~~~~ 366 (844)
+.+.+.|.+. +|+-...|+ .++.|+..+... + ..-.. .+....++-.+..+ +.+..
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elh 269 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELH 269 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 9999998631 123333444 455565533221 1 00001 11112222222111 11111
Q ss_pred HHHHHHHHH--------hhcC--chhhhh-h--hhcCchHHHHHHhhcCCHH---------HHHHHHHHHHHhhcCcccH
Q 003146 367 ILMATALSR--------MELT--DQSRAS-L--GEDGAIEPLVRMFRVGKLE---------AKLSALNALQNLSLLAENI 424 (844)
Q Consensus 367 ~~aa~~L~~--------Ls~~--~~~~~~-i--~~~g~i~~Lv~lL~~~~~~---------~~~~A~~aL~nLs~~~~~~ 424 (844)
..+..-|.| ++.. .++... + ...--...+..+|...... ...-.+..|..+|..+.+.
T Consensus 270 shav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~ 349 (532)
T KOG4464|consen 270 SHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM 349 (532)
T ss_pred hccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH
Confidence 122222211 1111 011111 1 1112233344444321111 1112345666667767677
Q ss_pred HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC
Q 003146 425 QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS 504 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 504 (844)
++..+..++|||.+.-+.+.-. .. .-..++.+|.-.+..++.-|...|.-||+.+
T Consensus 350 Rkylr~qVLPPLrDV~~RPEvg-~t-----------------------LRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes- 404 (532)
T KOG4464|consen 350 RKYLRQQVLPPLRDVSQRPEVG-QT-----------------------LRNKLVRLMTLPDSSVKDVAAEFLFVLCKES- 404 (532)
T ss_pred HHHHHHhcCCchhhhhcCcchh-HH-----------------------HHHhhHhheeccchhhhhhhHHHHHHHhhcc-
Confidence 7777777888877553333210 11 1234566666666778888899999999863
Q ss_pred hhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 003146 505 ASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVC 541 (844)
Q Consensus 505 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~ 541 (844)
++.++.....|+...--++..+|.
T Consensus 405 -------------V~rmIKYtGyGnaAGllA~rGll~ 428 (532)
T KOG4464|consen 405 -------------VNRMIKYTGYGNAAGLLAARGLLA 428 (532)
T ss_pred -------------hhhhhhhcccccHHHHHHhhhhhc
Confidence 677777777777665555555553
No 154
>PRK14707 hypothetical protein; Provisional
Probab=94.21 E-value=26 Score=45.91 Aligned_cols=64 Identities=16% Similarity=0.030 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh-hcCCHHHHHH-HHHHHHHHHhhhhh
Q 003146 734 GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEK-ALWILERIFRIEEH 800 (844)
Q Consensus 734 ~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~-A~~~L~~i~~~~~~ 800 (844)
-++......|+.+|..-..++. ....-.+..+|.-.+.-| ++++...-.. +..+-+++....+.
T Consensus 889 WPd~~~C~~AA~aLA~rL~~d~---~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~L 954 (2710)
T PRK14707 889 WPNVPVCAAAASALAERLADEP---ELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDL 954 (2710)
T ss_pred CCCcHHHHHHHHHHHHHHhcCH---HHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhh
Confidence 4666677777777776554331 111113344566666555 5655444444 44444455444333
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.08 E-value=0.19 Score=43.59 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcCc-hhhhhhhhcCchHHHHHHhh--cCCHHHHHHHHHHHHHhhcC-cccHHHHHH
Q 003146 366 KILMATALSRMELTD-QSRASLGEDGAIEPLVRMFR--VGKLEAKLSALNALQNLSLL-AENIQRLVI 429 (844)
Q Consensus 366 ~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~ 429 (844)
|....++|++|+... .++..+.+.|+||.++.... +.+|-.++.|+.|++||+.+ ++|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999999864 88999999999999998764 56788999999999999975 667666554
No 156
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.94 E-value=0.52 Score=55.44 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=48.9
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHH
Q 003146 651 GVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQ 730 (844)
Q Consensus 651 g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~ 730 (844)
.+++++.+++.++++.||+.|+.|+.++-.-++++. .+.|.+..+..
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~---------------------------------~~~g~~~~l~~ 173 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY---------------------------------HELGLIDILKE 173 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh---------------------------------hcccHHHHHHH
Confidence 356777777778888888888888877765444321 25567777777
Q ss_pred hhcCCChhhHHHHHHHHHhhhcc
Q 003146 731 VLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 731 lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
++.+.||.|..+|+.+|.++-.+
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 77788888887777777766443
No 157
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.89 E-value=3 Score=44.69 Aligned_cols=189 Identities=20% Similarity=0.142 Sum_probs=104.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHH--HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC----h-
Q 003146 393 EPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLV--ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS----E- 465 (844)
Q Consensus 393 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~----~- 465 (844)
...+..+.+.....|+.|+..+.++....-....+. ....++.+...++.+.+. + +..|+.++..++-. .
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~-E--~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSE-E--QALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHH-H--HHHHHHHHHHHhhhcCCCcc
Confidence 344555666778889999999988875543222222 233566677777766532 1 23455555555433 1
Q ss_pred hhhcccchHHHHHHhhccC--ChHHHHHHHHHHHHhhcCCC--hhHHHHHHHhCCcHHHHHHHhcc---------CCHHH
Q 003146 466 SILVNKDVAQQMLSLLNLC--SPTIQYHLLHALNSIAAHSS--ASNVRRKMKENGAIHLLLPFLME---------TNANI 532 (844)
Q Consensus 466 ~~l~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~--~~~~~~~i~~~g~i~~Lv~ll~~---------~~~~v 532 (844)
.--.-....+.|...+..+ ++..|..|+.+|.-++..++ ...+...+..-..+......=.+ +++.+
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 1111124566777777764 45677788877777665432 12222111111111111111111 12457
Q ss_pred HHHHHHHHHHhhhhhhH-HHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 003146 533 RAAALNLVCTLSKDVYE-ELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNL 586 (844)
Q Consensus 533 ~~~A~~~L~~ls~~~~~-~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L 586 (844)
...|+..-..|....+. .+. ......++.|+.+|. +++.++|.+|..+|+-|
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~-s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLD-SDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 77777766666555453 333 333447888999888 57889998887776654
No 158
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.83 E-value=14 Score=44.03 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=137.1
Q ss_pred cCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHH
Q 003146 318 SGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKE-GSDMSKILMATALSRMELTDQSRASLGEDGAIEPLV 396 (844)
Q Consensus 318 ~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 396 (844)
.++.|.....|.+++...+.....-..+.. -.+...+..+.. ..+.++..+.+++...+... .... ..++.+..|.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~-~~p~ild~L~ 536 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLS-LQPMILDGLL 536 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCce-eccc-cchHHHHHHH
Confidence 456677666777777766543211111111 112223333333 33456667777766555211 1110 1257777888
Q ss_pred HHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhh--hcccchH
Q 003146 397 RMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESI--LVNKDVA 474 (844)
Q Consensus 397 ~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~--l~~~~~i 474 (844)
++....+.++--.-..+|...+..+.-.....++-+.|-.+.+....+.+ ..+...+..++..+.....- -..+..+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D-P~V~~~~qd~f~el~q~~~~~g~m~e~~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED-PQVASLAQDLFEELLQIAANYGPMQERLI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 88777677777777788888887766555566677777777766555443 35667777777777654311 1123579
Q ss_pred HHHHHhhccCC----hHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHH-hccCCHHHHHHHHHHHHHhhhhhhH
Q 003146 475 QQMLSLLNLCS----PTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPF-LMETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 475 ~~Lv~lL~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
|.+++.|.... +....-++.+|..+-++.+++ .-+.+. .-+.|++.+. +.+++.+.-..|..||+.+.....+
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 99999998755 456666777777776665433 222221 2256777766 5566678888999999888765554
Q ss_pred HHHH
Q 003146 550 ELAE 553 (844)
Q Consensus 550 ~i~~ 553 (844)
.+..
T Consensus 694 q~~t 697 (1005)
T KOG2274|consen 694 QLLT 697 (1005)
T ss_pred HHHh
Confidence 4443
No 159
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.76 E-value=0.08 Score=34.98 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.7
Q ss_pred chHHHHhhcCCChhhHHHHHHHHHhhhc
Q 003146 725 VSPLIQVLEGKEREADETVLGALASLLQ 752 (844)
Q Consensus 725 i~~Lv~lL~~~~~~v~~~A~~AL~~L~~ 752 (844)
+|.+++++.|++++||.+|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999998864
No 160
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.38 E-value=1.5 Score=51.27 Aligned_cols=349 Identities=11% Similarity=0.078 Sum_probs=175.8
Q ss_pred HHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH------HcCChHHHHH
Q 003146 283 QREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA------EAGYFKPLVQ 356 (844)
Q Consensus 283 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~------~~g~i~~Lv~ 356 (844)
--.+.+.|..|+.+..+...+.. .|+|..|+..=+-. ..-.-...+|+.++........+. -..++..-+.
T Consensus 370 ~~~~~k~~~~l~~h~kfa~~fv~-~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~ 446 (1516)
T KOG1832|consen 370 LPDVMKLICALAAHRKFAAMFVE-RRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIE 446 (1516)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHH-hhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHH
Confidence 34677888888888888888887 88888777653211 111122345666655443322221 1223444455
Q ss_pred HhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcC--------C---H--------HHHHHHHHHHHH
Q 003146 357 YLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVG--------K---L--------EAKLSALNALQN 416 (844)
Q Consensus 357 ~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~--------~---~--------~~~~~A~~aL~n 416 (844)
+|.......+.+++-. +..+.. ...-..+-...++..|+.++++- + + ..-+..+.+|+.
T Consensus 447 l~~cs~~~~~~~~~~f-f~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~ 525 (1516)
T KOG1832|consen 447 LLDCSQDQARKNSALF-FAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQ 525 (1516)
T ss_pred HHhcchhhccchHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHH
Confidence 6655544444333221 122211 12222333456777777777531 0 0 111223444442
Q ss_pred -----hhcCccc-HHHHHHcCChHHHHHHhhccCCc---chhhHHHHHHHHHHHhcC-h----------hhhcccchHHH
Q 003146 417 -----LSLLAEN-IQRLVISGIVSPLLQLLFSVTSV---LMTLREPASAILARIAQS-E----------SILVNKDVAQQ 476 (844)
Q Consensus 417 -----Ls~~~~~-~~~i~~~g~v~~Lv~lL~~~~~~---~~~l~~~a~~~L~~l~~~-~----------~~l~~~~~i~~ 476 (844)
|...-++ +..-+..|.++..+.-+...... ++...+...+-+..+... + +.+...+++..
T Consensus 526 Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~ 605 (1516)
T KOG1832|consen 526 YFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVT 605 (1516)
T ss_pred HHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHH
Confidence 2222233 33444555555555533332211 111223333333333222 1 12334456677
Q ss_pred HHHhhccC------C--hHHHHHHHHHHHHhhcCCChhHHHHHHHhC--------CcHHHHHHHhcc----CCHHHHHHH
Q 003146 477 MLSLLNLC------S--PTIQYHLLHALNSIAAHSSASNVRRKMKEN--------GAIHLLLPFLME----TNANIRAAA 536 (844)
Q Consensus 477 Lv~lL~~~------~--~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~--------g~i~~Lv~ll~~----~~~~v~~~A 536 (844)
++++...+ + .+...+|+.+|.-+..-+ ..+..+... .|+..++..-.. .+++++..|
T Consensus 606 ~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP---~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~A 682 (1516)
T KOG1832|consen 606 MLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP---DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPA 682 (1516)
T ss_pred HHHHHhcCccccccCcchHHHHHHHhheeeeEecc---hHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHH
Confidence 77765432 1 245677888887777663 444444321 144444443322 267999999
Q ss_pred HHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHH---HHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcC
Q 003146 537 LNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAA---VGILSNLPVSNKKATELLKKTNLLPSLISAATSS 613 (844)
Q Consensus 537 ~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a---~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~ 613 (844)
+.+|.|+....+.. ....++++.+.+++......+ -..|.+- -......+...++|+.|+++++-.
T Consensus 683 L~vIincVc~pp~~--------r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~---l~~mw~~Vr~ndGIkiLl~Ll~~k 751 (1516)
T KOG1832|consen 683 LNVIINCVCPPPTT--------RPSTIVAVGSQSGDRRIFLGAGTKSAKLEQV---LRQMWEAVRGNDGIKILLKLLQYK 751 (1516)
T ss_pred HhhhheeecCCCCc--------chhhhhhccccCCCccccccCCCchHHHHHH---HHHHHHHHhcCccHHHHHHHHhcc
Confidence 99999987654422 112233333322222111000 0011111 123466677889999999999865
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCH
Q 003146 614 TITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVI 653 (844)
Q Consensus 614 ~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i 653 (844)
++ -...+.++.-|+.+|..++. ++.+++.+.+.-++
T Consensus 752 ~P--~t~aD~IRalAc~~L~GLaR--~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 752 NP--PTTADCIRALACRVLLGLAR--DDTVRQILTKLPLV 787 (1516)
T ss_pred CC--CCcHHHHHHHHHHHHhcccc--CcHHHHHHHhCccc
Confidence 42 22345688899999999997 55666666655444
No 161
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.23 E-value=0.21 Score=44.51 Aligned_cols=72 Identities=13% Similarity=0.328 Sum_probs=57.4
Q ss_pred CCchHHHHhhc-CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 003146 723 GAVSPLIQVLE-GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFR 796 (844)
Q Consensus 723 ~ai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~ 796 (844)
..+..|+++|. +.|+.+...|+.=|+.++..- +.|...+.+.|+=..+.+++.++|+++|..|+.+++++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~--p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY--PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHC--hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 36689999994 557777777888888888654 3477888888998999999999999999999999998853
No 162
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.17 E-value=0.24 Score=44.11 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHhhh------hccHHHHHHHHcCCChH-HHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCC
Q 003146 164 RKAVEMEEEIQEIVEERI------SLGIDDVMLQLKHGDDK-NLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGS 236 (844)
Q Consensus 164 ~~~~~l~~~I~~~~~~~~------~~~i~~lv~~L~~~~~~-~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s 236 (844)
-.|...-++=++|+|-.. -.-+..|+.+|..+++. ...-|+.++..+++.-+..+..+...|+=..+++++.+
T Consensus 18 L~WSP~H~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h 97 (119)
T PF11698_consen 18 LEWSPVHKSEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH 97 (119)
T ss_dssp ----GGGG-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-
T ss_pred ccccCCCCCccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC
Confidence 355555567789988321 12378999999555444 56667788999998777778888888999999999999
Q ss_pred CCchHHHHHHHHHHHhHhc
Q 003146 237 SKPYNRLIMIQILRNLASE 255 (844)
Q Consensus 237 ~~~~~~~~a~~~L~~L~~~ 255 (844)
+|++++..|+.++..+...
T Consensus 98 ~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 98 EDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 163
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.12 E-value=0.35 Score=41.78 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=49.4
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHH--hCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK--ENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
..+++++..+.+.++.+|+.|+.+|.+++... +..+. -....+.|.+++.+.++.||..|.-
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA-----RGEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 45788888999999999999999999998653 22322 3457889999999999999877743
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.75 E-value=9.5 Score=41.22 Aligned_cols=196 Identities=12% Similarity=0.149 Sum_probs=138.2
Q ss_pred HHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC-ccHH-----HHHHcCChHHHHHHhccC--CHHHHHHHHHHH
Q 003146 302 RIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT-QNAL-----HMAEAGYFKPLVQYLKEG--SDMSKILMATAL 373 (844)
Q Consensus 302 ~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~-~~~~-----~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L 373 (844)
.+.. .|.++.|+..|..-+-+++..++.+..++-... .++. .+. ..-+.++..|-.| +++.-..+...|
T Consensus 71 Ei~~-~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~--~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYR-SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE--RHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHH-HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH--T--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHH-hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH--hCCHHHHHHHHHHhcCccccchHHHHH
Confidence 4555 899999999999999999999999998887532 2221 121 2223344444433 345556777788
Q ss_pred HHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc-CcccHHHHHHc---CChHHHHHHhhccCCcchh
Q 003146 374 SRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL-LAENIQRLVIS---GIVSPLLQLLFSVTSVLMT 449 (844)
Q Consensus 374 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~~~~~i~~~---g~v~~Lv~lL~~~~~~~~~ 449 (844)
......+.....+.....+..+.+....++-++-.+|..++.-|-. ++......+.. ..+...-.+|.+++ -.
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N---Yv 224 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN---YV 224 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS---HH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC---eE
Confidence 8888777777777778888899999999999999999999998654 45555555543 24556677777766 34
Q ss_pred hHHHHHHHHHHHhcCh-------hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 450 LREPASAILARIAQSE-------SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 450 l~~~a~~~L~~l~~~~-------~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
.+..++..|..+-.++ .++.+..-+..++.+|++.+..+|..|..++--...++
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 6899999999998775 35666777889999999999999999999987766654
No 165
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=3.1 Score=48.92 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=128.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCC
Q 003146 353 PLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGI 432 (844)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~ 432 (844)
..+..+.++....|..+...|..+....+.+..+...+.+...+.+|++.++-+--.|...+..||.- ....+
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~i 803 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDI 803 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhh
Confidence 33444555556677778888888887776677777789999999999999988888888877777742 23456
Q ss_pred hHHHHHHhhccCCcc-hhhHHHHHHHHHHHhcCh-hhhcc--cchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHH
Q 003146 433 VSPLLQLLFSVTSVL-MTLREPASAILARIAQSE-SILVN--KDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNV 508 (844)
Q Consensus 433 v~~Lv~lL~~~~~~~-~~l~~~a~~~L~~l~~~~-~~l~~--~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 508 (844)
+|.|.+.-.+..+.. ..-+-..-.++.+++... +.... +-.+...+..++.++...|..++.+|.++|.-.. -.+
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a-~~v 882 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA-FQV 882 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh-hhh
Confidence 677776433322111 111122334555554332 11111 1234455556665666679999999999997531 111
Q ss_pred HHHHHhCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhhhhhHHHHHHhc---hhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 003146 509 RRKMKENGAIHLLLPFLM-ETNANIRAAALNLVCTLSKDVYEELAEQLG---DKYLNILVDITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 509 ~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~---~~~l~~Lv~lL~~~~~~~~~~~a~~~L 583 (844)
...+.+ ....++.+.+ ++..-+|++|+.++..+-...+......+. .+....+......++++..+..++-++
T Consensus 883 sd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 883 SDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222222 3444455444 556789999999998887655533322221 123333444444455555555555443
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.25 E-value=20 Score=43.40 Aligned_cols=233 Identities=17% Similarity=0.105 Sum_probs=134.2
Q ss_pred hhCcHHHHHHhhcC-----CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhc----cCC----HHHHHHHHHH
Q 003146 306 IQGCIVMLVSMLSG-----NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLK----EGS----DMSKILMATA 372 (844)
Q Consensus 306 ~~g~i~~Lv~lL~s-----~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~----~~~----~~~~~~aa~~ 372 (844)
+.|++..|+.++.+ .+.......+..|...+....||.++.+.|+++.|++.|. .+. ...-+....+
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 49999999999864 2344555666777777788999999999999999998885 322 3333344444
Q ss_pred HHHhhcC---chh---hhhhhhc-------CchHHHHHHhhcC----CHHHHHHHHHHHHHhhcCcccH-HHHHHcCChH
Q 003146 373 LSRMELT---DQS---RASLGED-------GAIEPLVRMFRVG----KLEAKLSALNALQNLSLLAENI-QRLVISGIVS 434 (844)
Q Consensus 373 L~~Ls~~---~~~---~~~i~~~-------g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~~~-~~i~~~g~v~ 434 (844)
+..+... +.. ....... .-+..|++-+.++ ++.....-++.|-+|+...... ..+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 4443321 111 1101111 1255555555543 4677778888999998765533 333321 22
Q ss_pred HHHHHhhc--cCCcchhhHHHHHHHHHHHhcCh----------hhhcccchHHHHHHhhcc--------CChHHHH----
Q 003146 435 PLLQLLFS--VTSVLMTLREPASAILARIAQSE----------SILVNKDVAQQMLSLLNL--------CSPTIQY---- 490 (844)
Q Consensus 435 ~Lv~lL~~--~~~~~~~l~~~a~~~L~~l~~~~----------~~l~~~~~i~~Lv~lL~~--------~~~~~~~---- 490 (844)
+.+++=.- ...... ..-+..++.++.+- ..+.+.|.+...++.|.. .+|++++
T Consensus 273 p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22222111 111111 23355666666551 345667888877776643 3455554
Q ss_pred ----HHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC-CHHHHHHHHHHHHHhhhh
Q 003146 491 ----HLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET-NANIRAAALNLVCTLSKD 546 (844)
Q Consensus 491 ----~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~A~~~L~~ls~~ 546 (844)
.+++.|..||... ...+.. ...++++.+-.+=+-. +.++-.-|-.+|..+..+
T Consensus 350 psLp~iL~lL~GLa~gh--~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGH--EPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred CcHHHHHHHHHHHHhcC--HHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 5889999999874 333333 5566775444443322 346667777777777654
No 167
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.18 E-value=4.9 Score=41.12 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHhHhcChhhHHHH-hcCCcHHHHHHHhcC-------C---H---HHHHHHHHHHHHccCCChhHHHHh
Q 003146 239 PYNRLIMIQILRNLASENADYKEKM-ANVGSLSALVKSLTR-------D---V---EEQREAVGLLLDLSDLPAVWRRIG 304 (844)
Q Consensus 239 ~~~~~~a~~~L~~L~~~~~~~~~~i-~~~g~i~~Lv~~L~~-------~---~---~~~~~A~~~L~~Ls~~~~~~~~i~ 304 (844)
++.|..|+.-|..--...++-.-.+ ...|++..|++-.-+ . . .--..|+..+.-++.+++.+..+.
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl 88 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFL 88 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 5667776666654322222222222 346666666544322 1 1 112357788888899999999999
Q ss_pred hhhCcHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCCc--cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 305 RIQGCIVMLVSMLSGND-----PVASHDAGKLLNALSSNTQ--NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRME 377 (844)
Q Consensus 305 ~~~g~i~~Lv~lL~s~d-----~~~~~~A~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (844)
+ +...-.|..+|+..+ ...+-...++++.|...++ ...-+.+...+|..++.+..|++-.|..|.-++..+-
T Consensus 89 ~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 89 K-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp H-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred H-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 8 888777778886432 3456677788888876433 3444557889999999999999999999999999988
Q ss_pred cCchhhhhhhh--------cCchHHHHH-HhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH
Q 003146 378 LTDQSRASLGE--------DGAIEPLVR-MFRVGKLEAKLSALNALQNLSLLAENIQRLVI 429 (844)
Q Consensus 378 ~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~ 429 (844)
.++.+-..+.+ ..++..+|. +.++++++.-+..+++-..|+.++..+..+.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77765444433 122333333 34567888889999999999998887776653
No 168
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.77 E-value=5.2 Score=44.68 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=115.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCC-cchhhHHHHHHHHHHHhcChhh---h
Q 003146 393 EPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTS-VLMTLREPASAILARIAQSESI---L 468 (844)
Q Consensus 393 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~l~~~a~~~L~~l~~~~~~---l 468 (844)
..+..++.+++...+..|++-|..++.++.-...++...++..|..++.++.. -...+...++.++..+-...-+ .
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 46778888999999988999999999999989999999999999999988764 1233445566666666554421 1
Q ss_pred cccchHHHHHHhhcc--CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh
Q 003146 469 VNKDVAQQMLSLLNL--CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKD 546 (844)
Q Consensus 469 ~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~ 546 (844)
....+|.....+.+. -+..+-..|+..|-++.... ...++.+.++--++.|+..++..+..++..|..++..+...
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s--~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS--DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC--hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 123445555555432 23446778888888887764 56788888999999999999999999999999999888765
Q ss_pred hhH
Q 003146 547 VYE 549 (844)
Q Consensus 547 ~~~ 549 (844)
.++
T Consensus 244 a~~ 246 (713)
T KOG2999|consen 244 APD 246 (713)
T ss_pred CCh
Confidence 553
No 169
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.66 E-value=11 Score=36.87 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhc
Q 003146 403 KLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLN 482 (844)
Q Consensus 403 ~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~ 482 (844)
++.+|..++.+++-|+...++ ++ ...+|.+...|.+++ ..+|..|+.+|..|...+-+-.....+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~---~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDED---PLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc
Confidence 467889999999999864332 11 224677888887765 46899999999999877644344444578888899
Q ss_pred cCChHHHHHHHHHHHHhhcC
Q 003146 483 LCSPTIQYHLLHALNSIAAH 502 (844)
Q Consensus 483 ~~~~~~~~~a~~~L~~L~~~ 502 (844)
+++++++..|...|..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998766
No 170
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=44 Score=41.35 Aligned_cols=219 Identities=17% Similarity=0.175 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHHHHHhhcCchhhhhhhh--cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-c-ccHHHHHHcCChHH
Q 003146 360 EGSDMSKILMATALSRMELTDQSRASLGE--DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-A-ENIQRLVISGIVSP 435 (844)
Q Consensus 360 ~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~-~~~~~i~~~g~v~~ 435 (844)
+.+..+|..+-++|..++..+.......+ ...-..|.+-.++.+...+..++.+|..|-.. + +.+..+.. .||-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHH
Confidence 34667888899999988876433322222 12223334444444445566666666655432 2 23222222 2333
Q ss_pred HHHHhhccCCcchhhHHHHHHHHHHHhc--Chhhhcc---cchHHHHHHhhccC--ChHHHHHHH--HHHHHhhcCCChh
Q 003146 436 LLQLLFSVTSVLMTLREPASAILARIAQ--SESILVN---KDVAQQMLSLLNLC--SPTIQYHLL--HALNSIAAHSSAS 506 (844)
Q Consensus 436 Lv~lL~~~~~~~~~l~~~a~~~L~~l~~--~~~~l~~---~~~i~~Lv~lL~~~--~~~~~~~a~--~~L~~L~~~~~~~ 506 (844)
++-.++..+ ...++.+-.+|..++. ......+ ...+..++..+..+ +...+..+. -++..+.... .
T Consensus 743 vIL~~Ke~n---~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~--~ 817 (1176)
T KOG1248|consen 743 VILSLKEVN---VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF--K 817 (1176)
T ss_pred HHHhccccc---HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH--h
Confidence 333333333 4567888888888873 2111111 12456666665543 333333332 2222322211 1
Q ss_pred HHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 003146 507 NVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNL 586 (844)
Q Consensus 507 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L 586 (844)
.+-....-.+.+..+..++.+++++++..|...+..+....+........+..++.+..++.+ ....++..+-..|-.|
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d-~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD-HKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 111111123356677778889999999999999999988777655444334466666665553 3445555444444333
No 171
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.45 E-value=2.8 Score=48.98 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=135.6
Q ss_pred hHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHH-HhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 003146 506 SNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVC-TLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILS 584 (844)
Q Consensus 506 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~-~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~ 584 (844)
+.-+......|+...|+.+....+++.+..+..+|. .+.- .... ....++.+...+...........++.++.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 455666778999999999999999998888888886 1110 0111 11244455554443333344567888999
Q ss_pred cCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHH-cCCHHHHHHHhccC
Q 003146 585 NLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQ-HGVIRLLVKLLSSE 663 (844)
Q Consensus 585 ~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~ 663 (844)
||+..+...++.+.+..+++.+-.++...+. .++..+...+.|+.... .-+-+.+.+ ....|.....+...
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~-------~lqraa~e~~~NLl~~~-~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENP-------ALQRAALESIINLLWSP-LLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccH-------HHHHHHHHHHHHHHhhH-HHHHHHhhccccCchHHHHHHHhh
Confidence 9998888888889988888887777765553 45667888888887632 222233444 45667777777777
Q ss_pred CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHH
Q 003146 664 SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETV 743 (844)
Q Consensus 664 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A 743 (844)
......+++.++..+...+.+.. + + .+-....-..++.++.+.+++++.-.
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c-------------------------~-~---~~~~~~~~e~~~~~i~~~~~~~qhrg 690 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHC-------------------------S-R---ILELLEWLEILVRAIQDEDDEIQHRG 690 (748)
T ss_pred hhHHhhhccccccchhhcchhhh-------------------------h-h---HHHhhcchHHHHHhhcCchhhhhhhh
Confidence 77777777777776665444411 1 0 11122345778888899999999888
Q ss_pred HHHHHhhhc
Q 003146 744 LGALASLLQ 752 (844)
Q Consensus 744 ~~AL~~L~~ 752 (844)
+...+++..
T Consensus 691 l~~~ln~~~ 699 (748)
T KOG4151|consen 691 LVIILNLFE 699 (748)
T ss_pred hhhhhhHHH
Confidence 877777443
No 172
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.19 E-value=46 Score=41.12 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=99.4
Q ss_pred ChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHHHHHHHHhh
Q 003146 602 LLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLS-SESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 602 ~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vk~~Aa~aL~~ls~ 680 (844)
..|.++...+.+..-. .+.++..|--+|++|..-... +. +--.|.|...+. +++|.+|.++..+++.|+-
T Consensus 920 f~piv~e~c~n~~~~s---dp~Lq~AAtLaL~klM~iSa~-----fc-es~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFS---DPELQAAATLALGKLMCISAE-----FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHhcCCCcCC---CHHHHHHHHHHHHHHhhhhHH-----HH-HHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 4455666665443222 245777777788877653322 11 235789999997 7899999999999999986
Q ss_pred cCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhh
Q 003146 681 NSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGS 760 (844)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~ 760 (844)
.-+++- .-.-+.|..-|++.++.||..|.-.|..|..++
T Consensus 991 ~fpnli-----------------------------------e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------ 1029 (1251)
T KOG0414|consen 991 RFPNLI-----------------------------------EPWTEHLYRRLRDESPSVRKTALLVLSHLILND------ 1029 (1251)
T ss_pred hccccc-----------------------------------chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------
Confidence 544432 112367888889999999999999999999876
Q ss_pred HHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 761 NYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 761 ~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
+|---|-+......+.++++.++.-|-.-+..+
T Consensus 1030 -miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 1030 -MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred -hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 333356677788888999988888776444333
No 173
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.13 E-value=12 Score=43.04 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=97.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-hhhcccc
Q 003146 395 LVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-SILVNKD 472 (844)
Q Consensus 395 Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-~~l~~~~ 472 (844)
++...+ ++...|+-|+..+.....+ |+-.... +..+++|..+.+ ..+|..|..-|..+|.+. +.+ ..
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed---~~iR~~aik~lp~~ck~~~~~v--~k 96 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDED---VQIRKQAIKGLPQLCKDNPEHV--SK 96 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SS---HHHHHHHHHHGGGG--T--T-H--HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhccc---HHHHHHHHHhHHHHHHhHHHHH--hH
Confidence 334433 5778888888888877765 5554443 456888876554 568888888888888764 221 24
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc---cCCHHHHHHHHHHHHHhhhhhhH
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM---ETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~---~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
.+..|+++|.+.++.....+-.+|..|-...+ .+.+..+...+. .+++.+|+.+.+.|+.=....+.
T Consensus 97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~----------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP----------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H----------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 57788899998888888777778877765531 123555555554 67778999999888543222221
Q ss_pred HHHH---HhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 003146 550 ELAE---QLGDKYLNILVDITLSSTSENEKAAAVGILSNLPV 588 (844)
Q Consensus 550 ~i~~---~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 588 (844)
++.. ....-.+..+-++|.+ -..++-...+.+|..+..
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~D-VTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQD-VTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG
T ss_pred HHhhchHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhCcc
Confidence 1110 0111122334455543 344555667778888865
No 174
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.01 E-value=44 Score=40.53 Aligned_cols=270 Identities=16% Similarity=0.151 Sum_probs=135.8
Q ss_pred HcCChHHHHHHhccCC-----HHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCH-----HHHHHHHHHHHH
Q 003146 347 EAGYFKPLVQYLKEGS-----DMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKL-----EAKLSALNALQN 416 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~A~~aL~n 416 (844)
...+.++.|+-|.++. ++.....+.+ +.+.|++..|+.++.+-.. ..-...++.|..
T Consensus 82 ~geAtE~~v~~l~~~~~~~~d~e~~~~~~~v-------------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~ 148 (802)
T PF13764_consen 82 DGEATEEFVESLEDDSEEEEDPEQEFKIASV-------------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRY 148 (802)
T ss_pred CCccchhhHhhccCccccccCHHHHHHHHHH-------------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHH
Confidence 3456777888776632 2333333333 3457999999999976321 223334555666
Q ss_pred hhcCcccHHHHHHcCChHHHHHHhhcc----C-CcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHH
Q 003146 417 LSLLAENIQRLVISGIVSPLLQLLFSV----T-SVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYH 491 (844)
Q Consensus 417 Ls~~~~~~~~i~~~g~v~~Lv~lL~~~----~-~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~ 491 (844)
.+.-+.|++.+++.|+++.|+..+... . .....+.+.-+.++..+.... ...+...-..
T Consensus 149 c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea----------------~~~~~~~~~~ 212 (802)
T PF13764_consen 149 CCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEA----------------NSSSSSESKS 212 (802)
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHH----------------hhhhhhhccc
Confidence 666788999999999999999888522 1 011223333333333332111 0000000000
Q ss_pred HHHHHHHhhc-CCChhHHHHHHHhCCcHHHHHHHhcc----CCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHH
Q 003146 492 LLHALNSIAA-HSSASNVRRKMKENGAIHLLLPFLME----TNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDI 566 (844)
Q Consensus 492 a~~~L~~L~~-~~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~l 566 (844)
.. .... ...... -+..|++.+.+ .++.+...-+++|-+|+....+. ++.+.. .+.+.+++
T Consensus 213 ~~----~~~~~~~~~~~---------~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~-m~~Lv~-~F~p~l~f 277 (802)
T PF13764_consen 213 SS----SLSGSEEQDKE---------QVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK-MDALVE-HFKPYLDF 277 (802)
T ss_pred cc----cccccccccHH---------HHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH-HHHHHH-HHHHhcCh
Confidence 00 0000 000011 13344444433 34566677777777776544322 122111 11111111
Q ss_pred --hcCCCCH--HH-HHHHHHHHhcCCCCC--HHHHHHHHhCCChHHHHHHhhcCCCCCC--CC-------chhHHHHHHH
Q 003146 567 --TLSSTSE--NE-KAAAVGILSNLPVSN--KKATELLKKTNLLPSLISAATSSTITKT--HS-------TPWLVESVAG 630 (844)
Q Consensus 567 --L~~~~~~--~~-~~~a~~~L~~L~~~~--~~~~~~l~~~~~v~~L~~ll~~~~~~~~--~~-------~~~l~e~a~~ 630 (844)
+.....+ .. ...-+.+..+++.+. ..+++.+.+.|++...++++....+... .. ..+-...++.
T Consensus 278 ~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~ 357 (802)
T PF13764_consen 278 DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILR 357 (802)
T ss_pred hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHH
Confidence 1111111 12 244566677776654 4678999999999999998875432211 11 1122346777
Q ss_pred HHHhccCCCCHHHHHHHHHcCCHHHHHHHhcc
Q 003146 631 ILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS 662 (844)
Q Consensus 631 aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 662 (844)
.|..++.. ....|.. ...+.+|.+-.|=+.
T Consensus 358 lL~GLa~g-h~~tQ~~-~~~~~l~~lH~LEqv 387 (802)
T PF13764_consen 358 LLRGLARG-HEPTQLL-IAEQLLPLLHRLEQV 387 (802)
T ss_pred HHHHHHhc-CHHHHHH-HHhhHHHHHHHhhcC
Confidence 77778775 3434544 445566665555443
No 175
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.70 E-value=12 Score=40.50 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=136.0
Q ss_pred hcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC------hhHHHHhhh-hCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q 003146 264 ANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP------AVWRRIGRI-QGCIVMLVSMLSGNDPVASHDAGKLLNAL 335 (844)
Q Consensus 264 ~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~------~~~~~i~~~-~g~i~~Lv~lL~s~d~~~~~~A~~~L~nL 335 (844)
...+.+..|+..|.. +-+.|+.++....++-... .....+... ...+..|+.- .+++++.-.+...|+..
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~mlRec 150 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHHHHHH
Confidence 345778888888887 6788888877777765431 123334332 2334444433 35677777888888888
Q ss_pred ccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc-Cchhhhhhhh---cCchHHHHHHhhcCCHHHHHHHH
Q 003146 336 SSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL-TDQSRASLGE---DGAIEPLVRMFRVGKLEAKLSAL 411 (844)
Q Consensus 336 s~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~ 411 (844)
..++.-...+.....+..+.+....++=++...|..++..+-. +...-..... .........+|.+++.-+|+.++
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 8888777788888899999999998888888788888877543 3332222222 34556788899999999999999
Q ss_pred HHHHHhhcCcccHHHHHH----cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 412 NALQNLSLLAENIQRLVI----SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 412 ~aL~nLs~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
+.|+.|-.++.|...|.. ..-+..++.+|++.. ..++-+|-.++...+.+|
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s---k~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS---KNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc---hhhhHHHHHHHHHHHhCC
Confidence 999999999998776653 334556777777665 458889999888777654
No 176
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=7.1 Score=45.06 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=68.3
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHH
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAE 553 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~ 553 (844)
+..++.-..+.+..+|..++.+|.-+.... ....-..-.+....+..-+.+..+.||..|..+|..+-.+..++
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~---~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDEN---AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccc---cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 333444445567789999999998886532 11111222345667777788899999999999998885433221
Q ss_pred HhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 003146 554 QLGDKYLNILVDITLSSTSENEKAAAVGILSNLPV 588 (844)
Q Consensus 554 ~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 588 (844)
.-.....++.++..+++++++.+|+ .|+..
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaL---snI~v 190 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAAL---SNISV 190 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHH---Hhhcc
Confidence 1125566788888889999998765 45544
No 177
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.52 E-value=7.4 Score=42.77 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=63.4
Q ss_pred cHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC-C-ChHHHHHHHHHHHHhccCCccHH
Q 003146 268 SLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG-N-DPVASHDAGKLLNALSSNTQNAL 343 (844)
Q Consensus 268 ~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~-d~~~~~~A~~~L~nLs~~~~~~~ 343 (844)
.+..++.-|.+ +...|+.++-.|..-+.++++++.+.. .|.+..++..+.. + ++...-.++.++.-++.+..+-.
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 45566666664 345788898888888899999999998 9999999998843 3 33333344455555565555555
Q ss_pred HHHHcCChHHHHHHhc
Q 003146 344 HMAEAGYFKPLVQYLK 359 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~ 359 (844)
.+-+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 5555666666677777
No 178
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.46 E-value=2 Score=42.25 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCCChhHHHHhh---------------hhCcHHHHHHhhcC------CChHHHHHHHHHHHHhccCCcc
Q 003146 283 QREAVGLLLDLSDLPAVWRRIGR---------------IQGCIVMLVSMLSG------NDPVASHDAGKLLNALSSNTQN 341 (844)
Q Consensus 283 ~~~A~~~L~~Ls~~~~~~~~i~~---------------~~g~i~~Lv~lL~s------~d~~~~~~A~~~L~nLs~~~~~ 341 (844)
...++..|.|+++.+..+..+.+ ....+..|+.++.. +...-....+.++.|++..++.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 34566677777777665554432 12357777776643 2334456788999999999999
Q ss_pred HHHHHHc--CC--hHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhc---CchHHHHHHhh
Q 003146 342 ALHMAEA--GY--FKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGED---GAIEPLVRMFR 400 (844)
Q Consensus 342 ~~~i~~~--g~--i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~ 400 (844)
|..+.+. +. +..|+.++.+.+...|.-++.++.|.+...+....+... +.+|.|+--|-
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999853 34 677777777776666779999999999987665555542 45555544443
No 179
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.07 E-value=2.4 Score=48.46 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHH
Q 003146 360 EGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLL 437 (844)
Q Consensus 360 ~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv 437 (844)
.|+...+..|+..+...-.. ++.. ..+|..+++|..+.+..+|..|++.|..+|.+ ++...++++ .|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD-----vL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD-----VLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH-----HHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH-----HHH
Confidence 36778888888888876543 3322 35789999999999999999999999999986 567676654 699
Q ss_pred HHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhc---cCChHHHHHHHHHHHH
Q 003146 438 QLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLN---LCSPTIQYHLLHALNS 498 (844)
Q Consensus 438 ~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~---~~~~~~~~~a~~~L~~ 498 (844)
++|.++++........++..|..+ ...+.+..+...+. .+++.+|+.++..|..
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~-------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQ-------DPKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 999877643233333444333322 22345666666655 5777899998877743
No 180
>PRK14707 hypothetical protein; Provisional
Probab=89.71 E-value=83 Score=41.65 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=83.6
Q ss_pred CcHHHHHHHhcC--CHHH-HHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHH-HhccCCccH
Q 003146 267 GSLSALVKSLTR--DVEE-QREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLN-ALSSNTQNA 342 (844)
Q Consensus 267 g~i~~Lv~~L~~--~~~~-~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~-nLs~~~~~~ 342 (844)
-.+...++-|+. +..+ +..|...-..|+.++..+..+-. .|+-..|=.+-+-++..+...|+..|. .|..+.+-+
T Consensus 331 ~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~ 409 (2710)
T PRK14707 331 RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELR 409 (2710)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhh
Confidence 356667777776 3333 44445555567788888877764 554444444545566666665555554 455555556
Q ss_pred HHHHHcCChHHHHHHhcc-CCHHHHHHHHHHHH-HhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHH-HHhhc
Q 003146 343 LHMAEAGYFKPLVQYLKE-GSDMSKILMATALS-RMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNAL-QNLSL 419 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL-~nLs~ 419 (844)
..|-..| |.-++.-|+. ++...-..++..|. .++.+.+-+..+-..++...|-.+-+=++...-..|+..| ..|+.
T Consensus 410 ~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~ 488 (2710)
T PRK14707 410 KGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAH 488 (2710)
T ss_pred hhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc
Confidence 6664444 4444555544 44455555666664 4565556666665544333332232323433333333333 45555
Q ss_pred CcccHH
Q 003146 420 LAENIQ 425 (844)
Q Consensus 420 ~~~~~~ 425 (844)
.++-++
T Consensus 489 ~~~l~~ 494 (2710)
T PRK14707 489 ERRLRK 494 (2710)
T ss_pred cHHHHh
Confidence 555433
No 181
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.37 E-value=56 Score=39.23 Aligned_cols=276 Identities=16% Similarity=0.127 Sum_probs=142.0
Q ss_pred HHHHhhcC-CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcC
Q 003146 312 MLVSMLSG-NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDG 390 (844)
Q Consensus 312 ~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 390 (844)
..++.+.- ..+-++..|+.++..-+...- -.=...+.+..|+++....+.++-.....+|.....-|.-...-.+.-
T Consensus 494 ~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v--l~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~sk 571 (1005)
T KOG2274|consen 494 ATVNALTMDVPPPVKISAVRAFCGYCKVKV--LLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESK 571 (1005)
T ss_pred HHHHhhccCCCCchhHHHHHHHHhccCcee--ccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcc
Confidence 44444443 334455666666655542110 000134566677777776777776667777777665443333333445
Q ss_pred chHHHHHHhh--cCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCC-cchhhHHHHHHHHHHHhcCh-h
Q 003146 391 AIEPLVRMFR--VGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTS-VLMTLREPASAILARIAQSE-S 466 (844)
Q Consensus 391 ~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~l~~~a~~~L~~l~~~~-~ 466 (844)
..|..+.+.. +.+|.+-..+-.++..|+....|...+. .-.+|.++..|..+.+ .+..+..-++.+|..+.... .
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 5666666553 4566565556566666665444444443 3368999999987652 22345566777777555542 1
Q ss_pred hh---cccchHHHHHHh-hccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCC-----cHHHHHHHhccCCHH-HHHHH
Q 003146 467 IL---VNKDVAQQMLSL-LNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENG-----AIHLLLPFLMETNAN-IRAAA 536 (844)
Q Consensus 467 ~l---~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g-----~i~~Lv~ll~~~~~~-v~~~A 536 (844)
-+ ...-+.+++.+. +.+++.++.+++..+|..+-+.. .+....--.++| .++.+-++|.-.+.+ .-..+
T Consensus 651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~-~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~V 729 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT-LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFV 729 (1005)
T ss_pred CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC-HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHH
Confidence 11 111234455543 45567778888888888877654 133333323333 234444555443332 22234
Q ss_pred HHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHH
Q 003146 537 LNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKK 592 (844)
Q Consensus 537 ~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 592 (844)
..++..|..+.+.++...++. .+...+.-+.......+...-..+++.|...+..
T Consensus 730 G~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~ 784 (1005)
T KOG2274|consen 730 GPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLD 784 (1005)
T ss_pred hHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHH
Confidence 444444444444433222211 2333333333233444444556667777665543
No 182
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.35 E-value=13 Score=40.78 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=57.2
Q ss_pred cHHHHHHHHcCCChH-HHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCch-HHHHHHHHHHHhHhcChhhHH
Q 003146 184 GIDDVMLQLKHGDDK-NLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPY-NRLIMIQILRNLASENADYKE 261 (844)
Q Consensus 184 ~i~~lv~~L~~~~~~-~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~-~~~~a~~~L~~L~~~~~~~~~ 261 (844)
.++.+++.+..+.+. ....++-++..-|.++.+ +..|...|....+.+.+.....+ ..-.+..++-.+.......-.
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~F-r~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQF-RRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHH-HHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 367788888855444 555677778888888876 57788889999999998533222 332233333333333322233
Q ss_pred HHhcCCcHHHHHHHhc
Q 003146 262 KMANVGSLSALVKSLT 277 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~ 277 (844)
.+.+......++++|.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3345556666677776
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.08 E-value=4.5 Score=43.24 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=102.6
Q ss_pred HhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH-HHhc-
Q 003146 479 SLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA-EQLG- 556 (844)
Q Consensus 479 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~-~~l~- 556 (844)
..+.+.++.+|+.++.+|+-.|-.. .+.... .++.+...+..+++.++..|++++.-+....+.... ....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld--~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLD--KELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhC--hHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 4677889999999999999888764 222211 467788888778899999999999877655442222 1111
Q ss_pred ------hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHh-CCChHHHHHHhhcCCCCCCCCchhHHHHHH
Q 003146 557 ------DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKK-TNLLPSLISAATSSTITKTHSTPWLVESVA 629 (844)
Q Consensus 557 ------~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~-~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~ 629 (844)
...+..+.+.+.+ .+++++..++..++.|-..+. +.+ ...+..|+-+.-++..... ..++....
T Consensus 107 ~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~---~~LrQ~L~ 177 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDN---QRLRQCLS 177 (298)
T ss_pred CccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCc---HHHHHHHH
Confidence 2245566677774 478889888888888743221 111 2334444444444432221 13555555
Q ss_pred HHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC
Q 003146 630 GILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE 663 (844)
Q Consensus 630 ~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 663 (844)
..+-.++.. .++.| .......+|.+..+.+..
T Consensus 178 ~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 178 VFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence 555566653 34334 344567788888877643
No 184
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.79 E-value=80 Score=40.27 Aligned_cols=142 Identities=11% Similarity=0.156 Sum_probs=82.7
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHcc-CCChhHHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLS-DLPAVWRRI 303 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls-~~~~~~~~i 303 (844)
....++..|..+...+|-+|++||.+++..++.-. .....-..+-+.+.+ ...+|+.|+..+.... ..++....+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 45566777788888999999999999987654321 111111122233333 3457888888877542 234333333
Q ss_pred hhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 003146 304 GRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL 378 (844)
Q Consensus 304 ~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~ 378 (844)
.+ .+.+-..+....++..++.+++.+|...++-..+.+ ....++....+....++..+..++.++=.
T Consensus 894 Y~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 894 YD------QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 32 344445567788999999999999975554443322 12222333333333356667777776644
No 185
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.47 E-value=8.1 Score=43.26 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=104.1
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCH----HHHHHHHHHHHHhhcCcccHH
Q 003146 350 YFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKL----EAKLSALNALQNLSLLAENIQ 425 (844)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~~~~ 425 (844)
....+.+.+.+|+...+..+...|..++.+......+....++..|..+..+++. ......+.++..+-.+.-...
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4556778899999988888889999999988888888888999999999999876 334455555555543322111
Q ss_pred HHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 426 RLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 426 ~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
..+...+|.....+.+.. .....+-..|+.+|.++..+. ..+.++-.+..|+..+..++..++..|...+-.+..
T Consensus 164 ~~~~~~fV~~~a~~V~~~-~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAK-REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 112222233333333211 112235578899999888775 345566678999999999988888888887777765
Q ss_pred CC
Q 003146 502 HS 503 (844)
Q Consensus 502 ~~ 503 (844)
..
T Consensus 243 ~a 244 (713)
T KOG2999|consen 243 KA 244 (713)
T ss_pred hC
Confidence 54
No 186
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=46 Score=39.02 Aligned_cols=133 Identities=19% Similarity=0.188 Sum_probs=84.6
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhc
Q 003146 390 GAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILV 469 (844)
Q Consensus 390 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~ 469 (844)
++=+.+-+++.+.+|-.|....-++.-=-.... +.++|..|+..--++.+ ..++..|..+|.-++..
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~n--DDVrRaAVialGFVl~~----- 585 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVN--DDVRRAAVIALGFVLFR----- 585 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccc--hHHHHHHHHHheeeEec-----
Confidence 333444456777777777665544321111122 23466667766333322 34888888888766543
Q ss_pred ccchHHHHHHhhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 470 NKDVAQQMLSLLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 470 ~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
+....+..+++|.. -+|.+|..++-+|.--|...+..+ ++..|-.+..+...-||+.|+-.+..+.
T Consensus 586 dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e---------Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE---------AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 33557788888865 578999999999988888754322 4566666677777789998888876654
No 187
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.60 E-value=30 Score=38.33 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=90.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCC----ccHHHHHHcCChHHHHHHhccCC------HH-HHHHHHHHHHHhhcCch
Q 003146 313 LVSMLSGNDPVASHDAGKLLNALSSNT----QNALHMAEAGYFKPLVQYLKEGS------DM-SKILMATALSRMELTDQ 381 (844)
Q Consensus 313 Lv~lL~s~d~~~~~~A~~~L~nLs~~~----~~~~~i~~~g~i~~Lv~~L~~~~------~~-~~~~aa~~L~~Ls~~~~ 381 (844)
+..++...+..-+-.|.-....+..++ .||+.+.++-+++-+-++|.+++ +. .+..+..+|.-++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 344455555555555555555666543 46888999989998888887641 22 35567777888877764
Q ss_pred h--hhhhhhcCchHHHHHHhhcC-CHH------HHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc
Q 003146 382 S--RASLGEDGAIEPLVRMFRVG-KLE------AKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV 443 (844)
Q Consensus 382 ~--~~~i~~~g~i~~Lv~lL~~~-~~~------~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~ 443 (844)
. ...+. ..||.|...+..+ +++ ...++-.+|+.+++.+.....++..|+++.+.+.-..+
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 3 23333 5789999988753 222 56788899999999988999999999999988765433
No 188
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.20 E-value=5.7 Score=37.86 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc--
Q 003146 449 TLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM-- 526 (844)
Q Consensus 449 ~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~-- 526 (844)
.++..+.-++..+-....--..+..-..+-.++..++.+..-.++.++..+-... .+.....+...|..+.+..++.
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~~~~~ 98 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPLASRK 98 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHHHH-C
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHHHhcc
Confidence 4667777777666311111111112223333444444556667777777775543 2444555668899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHH-HHHHHHHHHhc
Q 003146 527 ETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSEN-EKAAAVGILSN 585 (844)
Q Consensus 527 ~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~-~~~~a~~~L~~ 585 (844)
..+..++..++.+|..=+. ++..+..+...+++.|-+.++.+.++. ++..|+-+|..
T Consensus 99 ~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 99 SKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7778899999998865432 344455566667788888887666666 67666666654
No 189
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.59 E-value=6.7 Score=46.61 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=98.2
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhh--cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHH
Q 003146 349 GYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGE--DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQR 426 (844)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~ 426 (844)
..+|.|++.....+...+.+-..+|.+.-. +-.+..+.. ....|.|++-|.-++..+|-.+..++.-+....+.-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~-~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLT-NVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHh-cCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 466777777775445556555566665443 222344443 56778888888888999988888888776643332111
Q ss_pred HHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc-Ch-h--hhcccchHHHHHHhhccCChHHHHHHHHHH
Q 003146 427 LVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ-SE-S--ILVNKDVAQQMLSLLNLCSPTIQYHLLHAL 496 (844)
Q Consensus 427 i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~-~~-~--~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 496 (844)
---...||.++.+=.+++...+.+|+.|+..|..|.. -| . ......++..|...|.+....+|+.|+++=
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1123467777766555544357789999999999988 34 1 234567888999999888888999888763
No 190
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.39 E-value=34 Score=37.88 Aligned_cols=146 Identities=13% Similarity=0.137 Sum_probs=79.7
Q ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHH
Q 003146 517 AIHLLLPFLME-TNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATE 595 (844)
Q Consensus 517 ~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 595 (844)
.+..+++.|.+ .++..+.-|.+.|+-+.++.+..+.+.. +-++..+++.-.++.+...+.++-.++.-++..+|..+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst-E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST-EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-
Confidence 35566777777 5667888899999888777664432211 11444444444444444444444444444444344322
Q ss_pred HHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 003146 596 LLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISL 675 (844)
Q Consensus 596 ~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL 675 (844)
|..+..++...+. +..-.++..+.++...-..+-.. -.-..+.|.+++--++.+..||+.|..||
T Consensus 408 -------I~~i~~~Ilt~D~-------~~~~~~iKm~Tkl~e~l~~EeL~-~ll~diaP~~iqay~S~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 408 -------IVNISPLILTADE-------PRAVAVIKMLTKLFERLSAEELL-NLLPDIAPCVIQAYDSTSSTVRKTAVFCL 472 (516)
T ss_pred -------HHHHhhHHhcCcc-------hHHHHHHHHHHHHHhhcCHHHHH-HhhhhhhhHHHHHhcCchHHhhhhHHHhH
Confidence 2233333333211 11113333444444332222111 12347889999999999999999999998
Q ss_pred HHHh
Q 003146 676 AQLS 679 (844)
Q Consensus 676 ~~ls 679 (844)
-.+-
T Consensus 473 Vamv 476 (516)
T KOG2956|consen 473 VAMV 476 (516)
T ss_pred HHHH
Confidence 8765
No 191
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.05 E-value=4.1 Score=43.50 Aligned_cols=102 Identities=22% Similarity=0.170 Sum_probs=74.3
Q ss_pred HHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCCh
Q 003146 658 KLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKER 737 (844)
Q Consensus 658 ~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~ 737 (844)
.-+++.++.+|..|..|||-++.-+.... ...++.+.+.+..+++
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----------------------------------~~~l~l~~~~~~~~~~ 78 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELA-----------------------------------KEHLPLFLQALQKDDE 78 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHH-----------------------------------HHHHHHHHHHHHhCCH
Confidence 56788899999999999998776544322 1235677778877799
Q ss_pred hhHHHHHHHHHhhhccccchhhhHHHHhcC----------ChHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 738 EADETVLGALASLLQDETWESGSNYLAKLS----------GTQAIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 738 ~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g----------~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
.++..|+.++.-+..-. |...+...+ -+..+.+.+.+.+++++..|+..+.|++-.+
T Consensus 79 ~v~~~al~~l~Dll~~~----g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 79 EVKITALKALFDLLLTH----GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHHHHHHHHHHHHHHc----CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999988643 222221111 2344667777889999999999999998654
No 192
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=73 Score=35.68 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=49.4
Q ss_pred hCCcHHHHHHHh----ccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 003146 514 ENGAIHLLLPFL----METNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLP 587 (844)
Q Consensus 514 ~~g~i~~Lv~ll----~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 587 (844)
+.|....++..+ .+++..+|..|++.|.+.....++....+. ...+..++.-|-+..+.+++..++.+|..+.
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 344444444433 456668999999999999887676655443 3366677776766667788877777776663
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=84.57 E-value=11 Score=38.87 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhc-CchhhhhhhhcCchHHHHHHhhc-CCHHHHHHHHHHHHHhhc-CcccHHHHHHcCChHHHHHHhhc
Q 003146 366 KILMATALSRMEL-TDQSRASLGEDGAIEPLVRMFRV-GKLEAKLSALNALQNLSL-LAENIQRLVISGIVSPLLQLLFS 442 (844)
Q Consensus 366 ~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~-~~~~~~~i~~~g~v~~Lv~lL~~ 442 (844)
...|...|.-+.. ++..|..+.+..++..|+++|.. ..+.++..++.+|..+.. ++.|...+-+.+++..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 3456677776665 56889999999999999999954 567888889988887765 47898988899999999999988
Q ss_pred cCCcchhhHHHHHHHHHHHhc
Q 003146 443 VTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 443 ~~~~~~~l~~~a~~~L~~l~~ 463 (844)
.... ..++-++...|.-...
T Consensus 188 ~~~~-~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTD-RELRLKCIEFLYFYLM 207 (257)
T ss_pred cccc-HHHhHHHHHHHHHHHc
Confidence 7642 4566666666655543
No 194
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.56 E-value=30 Score=40.77 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=82.3
Q ss_pred HHHHHHHhccC----CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHH
Q 003146 653 IRLLVKLLSSE----SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPL 728 (844)
Q Consensus 653 i~~Lv~lL~~~----~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~L 728 (844)
+..+..++.++ .+.++..|..+++.+.... |.... .|+ .++ -...++.|
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~------------c~~~~---~~~-----------~~~-~~~~~~~l 447 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRY------------CVNTP---SCP-----------DFV-LEELLKYL 447 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH------------hcCCC---CCC-----------hhh-HHHHHHHH
Confidence 34466666643 4568888888888877421 11110 011 111 12355666
Q ss_pred HHhhc----CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhh---cCCHHHHHHHHHHHHHHHhhhhhh
Q 003146 729 IQVLE----GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLE---SGNAKAQEKALWILERIFRIEEHR 801 (844)
Q Consensus 729 v~lL~----~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~---~~~~~~~~~A~~~L~~i~~~~~~~ 801 (844)
.+.|. ..+.+.+..++.||+|+.... .+..+..++. ..+..+|..|+++|.++...
T Consensus 448 ~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~---- 510 (574)
T smart00638 448 HELLQQAVSKGDEEEIQLYLKALGNAGHPS-------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR---- 510 (574)
T ss_pred HHHHHHHHhcCCchheeeHHHhhhccCChh-------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh----
Confidence 66663 456777888999999998765 3445555553 23568999999999877431
Q ss_pred HhhccccchhHHhhhhc--CCCCchHHHHHHHHHH
Q 003146 802 VKYGESAQVVLIDLAQN--GDSRLKPAVAKLLAQL 834 (844)
Q Consensus 802 ~~~~~~a~~~Lv~ll~~--~~~~~~~~aa~~L~~l 834 (844)
.....+..|..++.+ .++++|-.|..+|-..
T Consensus 511 --~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 511 --DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred --CchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 122234567777774 4466777776666544
No 195
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.44 E-value=75 Score=35.59 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=82.3
Q ss_pred hcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhh-hccc---chH
Q 003146 400 RVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESI-LVNK---DVA 474 (844)
Q Consensus 400 ~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~-l~~~---~~i 474 (844)
.+++...+..|+..|.|.++. |+-+.... .-.+..++.-|.++.. ..+.-++...|..+...... -... +..
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~--~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLN--EEVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 456667899999999999987 54333322 2234445555555543 34556666666655443210 0011 223
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHH--hCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 475 QQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK--ENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 475 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
-.+..+..+.+++.|.++...+..|+...+ ...+..+. -.+...+|+-.+.+.++.+-.++-..++.+.
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g-~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAG-GGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcC-CCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 455667778889999998887777654432 11222222 1234456666788889988776666665543
No 196
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.97 E-value=35 Score=39.75 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=72.6
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHH
Q 003146 349 GYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLV 428 (844)
Q Consensus 349 g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~ 428 (844)
|.+..++.-..+.+..+|..++.+|..+.........-.-.+.+..+..-+.+..+.+|..|+.||..+-.++.+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 5666666666777788999999999988874332222223466777777788889999999999999998543321
Q ss_pred HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC
Q 003146 429 ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS 464 (844)
Q Consensus 429 ~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~ 464 (844)
+..++..+..+++++++ ..++..+ |.|++.+
T Consensus 161 e~~v~n~l~~liqnDpS--~EVRRaa---LsnI~vd 191 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPS--DEVRRAA---LSNISVD 191 (892)
T ss_pred cccHHHHHHHHHhcCCc--HHHHHHH---HHhhccC
Confidence 12345567888887664 4566555 4555544
No 197
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=83.66 E-value=38 Score=37.56 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCH---HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHH--
Q 003146 570 STSENEKAAAVGILSNLPVSNK---KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQ-- 644 (844)
Q Consensus 570 ~~~~~~~~~a~~~L~~L~~~~~---~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~-- 644 (844)
..+++++-+|.-....+.+++. ..++.+.++=+.+-+-.+++..+....-...-.+.-++..|..|+. +|++.
T Consensus 22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~--~pElAsh 99 (698)
T KOG2611|consen 22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR--VPELASH 99 (698)
T ss_pred ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC--ChhhccC
Confidence 4556777777777777766443 3466788888899999999876532222222344567777888876 44432
Q ss_pred HHHHHcCCHHHHHHHhccC-CHH------HHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccch
Q 003146 645 QYSVQHGVIRLLVKLLSSE-SVV------AKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTF 717 (844)
Q Consensus 645 ~~i~~~g~i~~Lv~lL~~~-~~~------vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~ 717 (844)
+.+. ..||.|..++..+ +++ +-..+-.+|.-++..... ..
T Consensus 100 ~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-------------------------------~~ 146 (698)
T KOG2611|consen 100 EEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-------------------------------LM 146 (698)
T ss_pred HHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-------------------------------hH
Confidence 2333 5789999999643 333 566777788877765433 24
Q ss_pred HhhhcCCchHHHHhhcCCChhhHH
Q 003146 718 CLVKAGAVSPLIQVLEGKEREADE 741 (844)
Q Consensus 718 ~l~~~~ai~~Lv~lL~~~~~~v~~ 741 (844)
.++..|+++.+.+.-.-.+....+
T Consensus 147 ~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 147 TLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred HHHhcCchHHHHHHHhCCCCchhH
Confidence 678889999999887655544433
No 198
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=83.56 E-value=6.1 Score=38.77 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=60.9
Q ss_pred HHHhcCCcHHHHHHHhcC----------CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHH
Q 003146 261 EKMANVGSLSALVKSLTR----------DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGK 330 (844)
Q Consensus 261 ~~i~~~g~i~~Lv~~L~~----------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~ 330 (844)
..+.+.||+..|+..|.. +.+....++..|+.+..+......+....+++..|+..|.++++.++..+..
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 556778899999988864 1245677899999998888777888877999999999999999999999999
Q ss_pred HHHHhc
Q 003146 331 LLNALS 336 (844)
Q Consensus 331 ~L~nLs 336 (844)
+|..+|
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 199
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.86 E-value=51 Score=37.58 Aligned_cols=171 Identities=18% Similarity=0.216 Sum_probs=95.8
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Q 003146 475 QQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQ 554 (844)
Q Consensus 475 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~ 554 (844)
..++.-+.+.+..+|..++.+|.-+...-+ + -....-.|.+..|..-+-+..+.||..|..+|..+-....++-
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~v~--e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--- 167 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDVVR--E-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--- 167 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHhcc--h-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH---
Confidence 334444455677899999999988754321 1 1123345667778887888889999999999987754433221
Q ss_pred hchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHh
Q 003146 555 LGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIR 634 (844)
Q Consensus 555 l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~ 634 (844)
......|+.++..+++.+++..| +.|+..++ ...|.++.-.++-+...++ -+-+.++.-++.
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~a---llni~vdn----------sT~p~IlERarDv~~anRr---~vY~r~Lp~iGd 229 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDN----------STYPCILERARDVSGANRR---MVYERCLPRIGD 229 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC----------CcchhHHHHhhhhhHHHHH---HHHHHHhhhhcc
Confidence 01233567777778888888765 45554432 3345555544443321111 122233444444
Q ss_pred ccCC-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 003146 635 FTDP-SDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLS 679 (844)
Q Consensus 635 l~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls 679 (844)
+... .++. |-.+-.-|.+....++..++.+++.-.
T Consensus 230 ~~~lsi~kr----------i~l~ewgl~dRe~sv~~a~~d~ia~~w 265 (885)
T COG5218 230 LKSLSIDKR----------ILLMEWGLLDREFSVKGALVDAIASAW 265 (885)
T ss_pred hhhccccce----------ehhhhhcchhhhhhHHHHHHHHHHHHh
Confidence 3332 1121 112333345556677777777776544
No 200
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.73 E-value=21 Score=33.92 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC--HHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHH
Q 003146 236 SSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD--VEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVM 312 (844)
Q Consensus 236 s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~ 312 (844)
...+++|..+..++..+. +..++.+.+ .+...+..+-.. .+....++.++..+-.. ++....+....|.++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 345788888888888774 222222211 122333333222 23556677777776544 6777777766999999
Q ss_pred HHHhhc--CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCC-HH-HHHHHHHHHHH
Q 003146 313 LVSMLS--GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGS-DM-SKILMATALSR 375 (844)
Q Consensus 313 Lv~lL~--s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~-~~~~aa~~L~~ 375 (844)
++.+.. +++...+..++.+|..-|.+...|..|.+ .+++.|-+.++.+. +. +|..|+-.|..
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 999998 78888888888888765655555555544 67888888886554 44 57677666654
No 201
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.07 E-value=98 Score=34.51 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=86.1
Q ss_pred hHHHHHHhhc-CCHHHHHHHHHHHHHhhcCcccHHHHHH--cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh
Q 003146 392 IEPLVRMFRV-GKLEAKLSALNALQNLSLLAENIQRLVI--SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL 468 (844)
Q Consensus 392 i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l 468 (844)
+..+++.|++ .+...|+.|++.|..++.+...+ +.+ .=+|..+++.-.+..+. ..+.++-.++..+++...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Leaa~ds~~~--v~~~Aeed~~~~las~~P-- 404 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEAAKDSQDE--VMRVAEEDCLTTLASHLP-- 404 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHhhCc--
Confidence 3456777777 66777889999999988765432 222 11334444443333332 223333333444444321
Q ss_pred cccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh
Q 003146 469 VNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKD 546 (844)
Q Consensus 469 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~ 546 (844)
...|..+..++-+.+...--.++..+..++..-+.++.-..+ ..+.|.+++..++.+..||..|.-||-.+...
T Consensus 405 --~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 405 --LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred --hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 123455555555555555556666666666654434444433 34889999999999999999999998766543
No 202
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=80.92 E-value=16 Score=37.62 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhh
Q 003146 532 IRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAAT 611 (844)
Q Consensus 532 v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~ 611 (844)
....|+.+|.-+.--++..-.-......++.++++|.....+.++.++..+|..+-.+++.+.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34556677765554444332222345588889999976677888888888888888888999999999999999999998
Q ss_pred cCCCCCCCCchhHHHHHHHHHHhccCC
Q 003146 612 SSTITKTHSTPWLVESVAGILIRFTDP 638 (844)
Q Consensus 612 ~~~~~~~~~~~~l~e~a~~aL~~l~~~ 638 (844)
+.+.. ..++-.++..|.-+..+
T Consensus 187 ~~~~~-----~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTD-----RELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccc-----HHHhHHHHHHHHHHHcc
Confidence 87642 23444455555444433
No 203
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=80.66 E-value=18 Score=42.03 Aligned_cols=246 Identities=16% Similarity=0.138 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHh
Q 003146 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYL 358 (844)
Q Consensus 279 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L 358 (844)
+.+++..-...|.. ..+...+.+.. .-.+|.|+..+...+ +....+..+..+...-.... .+.+.++.|++++
T Consensus 267 s~~eK~~Ff~~L~~--~l~~~pe~i~~-~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF 339 (690)
T KOG1243|consen 267 SVEEKQKFFSGLID--RLDNFPEEIIA-SKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLF 339 (690)
T ss_pred cHHHHHHHHHHHHH--HHhhhhHHHHH-HHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHh
Confidence 34455544444433 23445556665 667777877776555 22333344444432111111 5567899999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHH
Q 003146 359 KEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQ 438 (844)
Q Consensus 359 ~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~ 438 (844)
+..+..+|..-..-+-.. .+.-...+.+....|.+...+.+.++..++..++++..|+..=.-+ .+....+..+-.
T Consensus 340 ~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar 415 (690)
T KOG1243|consen 340 KSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLAR 415 (690)
T ss_pred cCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHh
Confidence 999888885443332222 1223334556778899999999999999999999988877421100 011111111222
Q ss_pred HhhccCCcchhhHHHHHHHHHHHhcCh-hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCc
Q 003146 439 LLFSVTSVLMTLREPASAILARIAQSE-SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGA 517 (844)
Q Consensus 439 lL~~~~~~~~~l~~~a~~~L~~l~~~~-~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~ 517 (844)
+ +.+.+ ..++....-+|..++..- ....+.-.+..+..-++++-+..|..++.+|...+...+..++... +
T Consensus 416 ~-q~d~~--~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~k-----I 487 (690)
T KOG1243|consen 416 L-QPDEH--GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANK-----I 487 (690)
T ss_pred h-Ccccc--CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhh-----c
Confidence 2 22211 234555555555555542 1222222233444455556666888899888888776644444333 5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 518 IHLLLPFLMETNANIRAAALNLVCTL 543 (844)
Q Consensus 518 i~~Lv~ll~~~~~~v~~~A~~~L~~l 543 (844)
++.++.+.-+.+..+|..|-..+...
T Consensus 488 lp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 488 LPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cccccccccCcccchhhHHHHHHHHH
Confidence 78888888888888888888777543
No 204
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.21 E-value=1.3e+02 Score=36.31 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=106.3
Q ss_pred HHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh---hhcccchHH--HHHHhhccCCh
Q 003146 413 ALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES---ILVNKDVAQ--QMLSLLNLCSP 486 (844)
Q Consensus 413 aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~---~l~~~~~i~--~Lv~lL~~~~~ 486 (844)
+|+++... ++++..+++.|++..+...+..-+. ..+...+..++.|++.... .......+. .+-.+++..+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~--~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN--EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcch
Confidence 88999865 7899999999999999999987643 3467899999999987641 111111111 22223443333
Q ss_pred -HHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHh-hhhhhHHHHHHhchhhHHH-H
Q 003146 487 -TIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTL-SKDVYEELAEQLGDKYLNI-L 563 (844)
Q Consensus 487 -~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~l-s~~~~~~i~~~l~~~~l~~-L 563 (844)
+.-+.+..+|..+..+++. .....-+..+...+... ..+....+..... ....+ +
T Consensus 572 ~ersY~~~siLa~ll~~~~~---------------------~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~ 629 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEK---------------------TTECVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRI 629 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCc---------------------CccccchHHHHHHHHHHhhccCccceeehhh-hhcchhH
Confidence 6677888888888776421 00011122222222221 1111111111111 12222 5
Q ss_pred HHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHh
Q 003146 564 VDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAA 610 (844)
Q Consensus 564 v~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll 610 (844)
.+++..+..+..+..|..++.++...+++..+.+.+.|+++.+.+.-
T Consensus 630 ~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 630 LRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 56666667777888899999999888888888888888888776654
No 205
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.10 E-value=11 Score=32.25 Aligned_cols=73 Identities=22% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
....+..+.++.+-+|.+++..|..|....+ ...+...+++..+...++++++-|--+|.+.|..|+...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3445566677778899999999999988753 233444567888899999999999999999999998766654
No 206
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.33 E-value=8.4 Score=38.81 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhcc-
Q 003146 405 EAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNL- 483 (844)
Q Consensus 405 ~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~- 483 (844)
.-++.|+.+|..||....|...++..+-.+.+-+ .+..|+.++..
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~----------------------------------l~~~L~r~l~~~ 184 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLER----------------------------------LFHTLVRLLGMR 184 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHH----------------------------------HHHHHHHHhccc
Confidence 4578888899988887777555544433332211 12334444433
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHH
Q 003146 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANI 532 (844)
Q Consensus 484 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v 532 (844)
.++-.||-|+.+|.+||... ....+....+.+.+..|+.++.+.....
T Consensus 185 e~~v~REfAvvlL~~La~~~-~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 185 EDQVCREFAVVLLSNLAQGD-EAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred cchhHHHHHHHHHHHHhccc-HHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 56778999999999999875 2444566668889999999998765543
No 207
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.23 E-value=15 Score=43.85 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=97.9
Q ss_pred hHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhc--CCcHHHHHHHhcC-CHHHHHHHHHHHHHcc
Q 003146 218 SEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMAN--VGSLSALVKSLTR-DVEEQREAVGLLLDLS 294 (844)
Q Consensus 218 ~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls 294 (844)
++++.. .+|++++...+.....+-.-+.+|.+.+..-+. ..+.. ....|.|++.|+- |.+.|-.+...+..+-
T Consensus 862 QRfF~~--ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 862 QRFFCD--IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHHh--hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 455554 699999998865556666777788888753332 22221 2356777888876 5566777776666553
Q ss_pred C-CChhHHHHhhhhCcHHHHHHhhcCCC---hHHHHHHHHHHHHhcc-CCccHHHHHHcCChHHHHHHhccCCHHHHHHH
Q 003146 295 D-LPAVWRRIGRIQGCIVMLVSMLSGND---PVASHDAGKLLNALSS-NTQNALHMAEAGYFKPLVQYLKEGSDMSKILM 369 (844)
Q Consensus 295 ~-~~~~~~~i~~~~g~i~~Lv~lL~s~d---~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a 369 (844)
. ++.....-. .-.+|.+..+-+++| ..+++.|..+|..|.. .+.+.-.-....++..|++.|.+...-+|..|
T Consensus 938 ~~~~tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 938 TESETLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HhccccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 3 232222221 346788888776655 5678899999999987 56555444455677888888888777778777
Q ss_pred HHH
Q 003146 370 ATA 372 (844)
Q Consensus 370 a~~ 372 (844)
+.+
T Consensus 1016 v~t 1018 (1030)
T KOG1967|consen 1016 VDT 1018 (1030)
T ss_pred HHH
Confidence 765
No 208
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=79.18 E-value=34 Score=34.04 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCC--cchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccC
Q 003146 407 KLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTS--VLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLC 484 (844)
Q Consensus 407 ~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~--~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~ 484 (844)
.-.|+..|..++++|+.+..++++.+---|..+|...++ ..+.++-
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRl-------------------------------- 164 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRL-------------------------------- 164 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeee--------------------------------
Confidence 446778888899999999888887764445555543321 1122333
Q ss_pred ChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 485 SPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 485 ~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
.+++++..|..+++ ..+...+....++|.+++++..++.--+.-|+.++..+-
T Consensus 165 ------tsLGVIgaLvkNds-q~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 165 ------TSLGVIGALVKNDS-QYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred ------hHHHHHHHHHhCCC-HHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 34444444444432 445555566678888888888888777776766665543
No 209
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.04 E-value=1.3e+02 Score=36.26 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=109.1
Q ss_pred HHHHhcc-CCccHHHHHHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcCchhhhhhhhcCchH--HHHHHhhcCCH-H
Q 003146 331 LLNALSS-NTQNALHMAEAGYFKPLVQYLKEG-SDMSKILMATALSRMELTDQSRASLGEDGAIE--PLVRMFRVGKL-E 405 (844)
Q Consensus 331 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~-~ 405 (844)
+|++... .+++...+.+.|+...+.+.+..- ..+.+..+.+.+.+++...+++........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778874 677899999999999999999855 45677889999999988665444332212222 22224443333 4
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHH-HHHhhcc-
Q 003146 406 AKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQ-MLSLLNL- 483 (844)
Q Consensus 406 ~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~-Lv~lL~~- 483 (844)
.-..|+..|..+..+.+. ....+..+..-+++... +.................+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e~--------------i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELLVEA--------------ISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHHH--------------hhccCccceeehhhhhcchhHHHHhccc
Confidence 555666666666554332 11222222222222111 1111111111111112222 4445544
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC-HHHHHHHHHH
Q 003146 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN-ANIRAAALNL 539 (844)
Q Consensus 484 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~A~~~ 539 (844)
..+..+-.|++++.+++... ++++..+.+.|+++.+...-.... .+++..+...
T Consensus 637 ~~~g~~lWal~ti~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQN--KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred CCCchHHHHHHHHHHHHHcC--hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 46778889999999999886 669999999999988877643322 3344444433
No 210
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=78.82 E-value=49 Score=40.18 Aligned_cols=190 Identities=18% Similarity=0.153 Sum_probs=113.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHH-hhcCCHHHHHHHHHHHHHhhcC-cccHHHHHH
Q 003146 352 KPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRM-FRVGKLEAKLSALNALQNLSLL-AENIQRLVI 429 (844)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~ 429 (844)
+.+-.-+.+..+..|..++..+................|-+-.+++. +.+.+..+...|+..|..++.. ... ..=..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHH
Confidence 33444445556666766766665543332211111113333334433 2455667788888888888754 222 22223
Q ss_pred cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHH
Q 003146 430 SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVR 509 (844)
Q Consensus 430 ~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 509 (844)
.++.|.+++-+....+ .+++....++-.++... .-....+.+...++.++|..+..+...|...-...++ ...
T Consensus 335 ~~v~p~lld~lkekk~---~l~d~l~~~~d~~~ns~---~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~-~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKS---ELRDALLKALDAILNST---PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP-KTV 407 (815)
T ss_pred HhhcchHHHHhhhccH---HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-cCc
Confidence 4567888888776653 35666666655554421 1224567788889999999999888777665544331 111
Q ss_pred HHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH
Q 003146 510 RKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 510 ~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
..-.-.+.++.++....+.+.+||..|..++..+-+..++
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 1112234788888888899999999999998777655443
No 211
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=78.82 E-value=6.2 Score=45.26 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=77.7
Q ss_pred chHHHHhhcCCChhhHHHHHHHHHhhhccccc-----hhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhh
Q 003146 725 VSPLIQVLEGKEREADETVLGALASLLQDETW-----ESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEE 799 (844)
Q Consensus 725 i~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~-----~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~ 799 (844)
...++.+|.++..-.|.+.+.+.+|++.+... +..-+.+ ..-+..+++.+.+.+|-.|.+|+..+++||...-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~--~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKL--NDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHH--HHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 57899999999999999999999999866421 1111111 0113445555678899999999999999997642
Q ss_pred hhHhhcccc--chhHHhhhhcCCCCchHHHHHHHHHHhhhhcCC
Q 003146 800 HRVKYGESA--QVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQS 841 (844)
Q Consensus 800 ~~~~~~~~a--~~~Lv~ll~~~~~~~~~~aa~~L~~l~~~~~~s 841 (844)
. -.+..+ ....+.-+|+.+.-||+.|-+.+..|-.-|-.+
T Consensus 379 k--~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 379 K--TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred c--ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 1 111122 124456778889999999999998885555443
No 212
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.78 E-value=34 Score=35.80 Aligned_cols=144 Identities=18% Similarity=0.162 Sum_probs=86.3
Q ss_pred HHHHHHHccCCChhHHHHhhhhCc-HHHHHHhhc----CCChHHHHHHHHHHHHhccCCccHHHHHHc-C-ChHHHHHHh
Q 003146 286 AVGLLLDLSDLPAVWRRIGRIQGC-IVMLVSMLS----GNDPVASHDAGKLLNALSSNTQNALHMAEA-G-YFKPLVQYL 358 (844)
Q Consensus 286 A~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~----s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~-g-~i~~Lv~~L 358 (844)
++..+|-+..++.....+....+. ...+..++. +..+..+-.+++++.|+-.++.++..+... + .+-..+..+
T Consensus 83 ~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~ 162 (268)
T PF08324_consen 83 ALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSL 162 (268)
T ss_dssp HHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCC
T ss_pred HHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHH
Confidence 444555555555444444432222 334444432 245667788999999999998888888753 3 344444444
Q ss_pred ccC----CHHHHHHHHHHHHHhhcCc-hhhh-hhhhcCchHHHHHHhhc--CCHHHHHHHHHHHHHhhcCcccHHHHHH
Q 003146 359 KEG----SDMSKILMATALSRMELTD-QSRA-SLGEDGAIEPLVRMFRV--GKLEAKLSALNALQNLSLLAENIQRLVI 429 (844)
Q Consensus 359 ~~~----~~~~~~~aa~~L~~Ls~~~-~~~~-~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~~~~~~i~~ 429 (844)
... +..++..++..+.|++..- ..+. .=.....+..++..+.. .+++....++.||++|...+.......+
T Consensus 163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 163 LSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp CTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 444 4567788888899997632 1111 00111234555553332 5788899999999999977665555554
No 213
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=78.51 E-value=1.4e+02 Score=34.89 Aligned_cols=172 Identities=16% Similarity=0.188 Sum_probs=109.2
Q ss_pred cccceecccccccHHHHHHHHHHHHHhhhhcc-------HHHHHHH-HcC----CChHHHHHHHHHHHHHHhcCCcChHH
Q 003146 153 LESGFVSDFESRKAVEMEEEIQEIVEERISLG-------IDDVMLQ-LKH----GDDKNLKFALLELRELISAKTVDSEW 220 (844)
Q Consensus 153 ~~~~~~~~l~~~~~~~l~~~I~~~~~~~~~~~-------i~~lv~~-L~~----~~~~~~~~a~~~l~~L~~~~~~~~~~ 220 (844)
+..+..+.+|-++..+.-..+.+.+|+..-.+ ...+|.- ..+ .+++.+..|--.+..+|.=+. ++
T Consensus 854 qd~ge~~~IggtsEddf~da~~fikE~ElLyGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~---~f 930 (1128)
T COG5098 854 QDRGESSRIGGTSEDDFVDAFFFIKEKELLYGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF---EF 930 (1128)
T ss_pred hhcchhhhccCCCHHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH---HH
Confidence 33445567777888888888888887543222 2333333 333 344455555555666664331 23
Q ss_pred HhhCCCHHHHHHHhC-CCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCCh
Q 003146 221 INEAEIIAVLLNRLG-SSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPA 298 (844)
Q Consensus 221 i~~~~~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~ 298 (844)
..+. .|.++..+. +++|.+|-.+...|+.++.-. | ..++. -...|.+.|.+ +.++|+.+...+..|--...
T Consensus 931 c~eh--lpllIt~mek~p~P~IR~NaVvglgD~~vcf--N--~~~de-~t~yLyrrL~De~~~V~rtclmti~fLilagq 1003 (1128)
T COG5098 931 CSEH--LPLLITSMEKHPIPRIRANAVVGLGDFLVCF--N--TTADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHH--HHHHHHHHhhCCCcceeccceeeccccceeh--h--hhhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc
Confidence 3332 799999886 889999998888887765211 1 11111 12345666655 56788888888776643332
Q ss_pred hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003146 299 VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT 339 (844)
Q Consensus 299 ~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~ 339 (844)
. ...|-.+.++.+|.++|..+.+.|--.+..++..+
T Consensus 1004 ~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 1004 L-----KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred e-----eeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 2 24788889999999999999998888887777644
No 214
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.52 E-value=8.4 Score=37.76 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHHHHHcCChHHHHHHhhccCC------cchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHH
Q 003146 424 IQRLVISGIVSPLLQLLFSVTS------VLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLL 493 (844)
Q Consensus 424 ~~~i~~~g~v~~Lv~lL~~~~~------~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~ 493 (844)
...+++.||+..|+.+|..... ........++.+|..+..+. .++...+.+..|+..|.+.++.++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 5667788999999888864321 12345677888898888875 4667789999999999999999999999
Q ss_pred HHHHHhh
Q 003146 494 HALNSIA 500 (844)
Q Consensus 494 ~~L~~L~ 500 (844)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.82 E-value=9.1 Score=42.95 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=70.5
Q ss_pred CCChHHHHHH-hhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHH
Q 003146 600 TNLLPSLISA-ATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE-SVVAKSSASISLAQ 677 (844)
Q Consensus 600 ~~~v~~L~~l-l~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~Aa~aL~~ 677 (844)
.+++..++.. ..+++. .++..|+.+|+-.+. .|+ ..++..+++|..+ ++.||...|.+|+-
T Consensus 550 ~~vv~~lLh~avsD~nD-------DVrRAAViAlGfvc~-~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGi 612 (926)
T COG5116 550 LGVVSTLLHYAVSDGND-------DVRRAAVIALGFVCC-DDR---------DLLVGTVELLSESHNFHVRAGVAVALGI 612 (926)
T ss_pred chhHhhhheeecccCch-------HHHHHHHHheeeeEe-cCc---------chhhHHHHHhhhccchhhhhhhHHHhhh
Confidence 3455555555 333332 467788888886664 333 4567778888654 89999999999997
Q ss_pred HhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccc
Q 003146 678 LSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE 754 (844)
Q Consensus 678 ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~ 754 (844)
.+.++... -++..|-.++.+.++-||.+|+-|++-+....
T Consensus 613 acag~G~~-------------------------------------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 613 ACAGTGDK-------------------------------------VATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred hhcCCccH-------------------------------------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 66544331 15677777888999999999999999877543
No 216
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=76.67 E-value=43 Score=40.61 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=108.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 003146 518 IHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELL 597 (844)
Q Consensus 518 i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l 597 (844)
.+.+..-+.+.+-.-|..|+.-+.-.......++ .....+-+..+++....+.+..+...++.+|..++......-..
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~-~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~- 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEI-VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK- 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhcccccc-ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-
Confidence 3444444555555555555554443322222011 11112233445555554556666667777777775543332111
Q ss_pred HhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 598 KKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQ 677 (844)
Q Consensus 598 ~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ 677 (844)
...+..|.+++.+.... ..+++.+..++-.+..... -..+++.+...+...+|..+......+..
T Consensus 333 ~~~~v~p~lld~lkekk-------~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKK-------SELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred HHHhhcchHHHHhhhcc-------HHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 23466777777775433 2466666666655554211 22466788889999999999887777766
Q ss_pred HhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcc
Q 003146 678 LSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 678 ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
......... |+ + . .-.++++.++....|.+.+||.+|..++..+..-
T Consensus 398 ~~~~~~~~~--------~~-----------------~--~--t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 398 KLRKLGPKT--------VE-----------------K--E--TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHhhcCCcC--------cc-----------------h--h--hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 544322111 00 0 0 0234678888888999999999999999987654
No 217
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.22 E-value=52 Score=39.22 Aligned_cols=175 Identities=21% Similarity=0.198 Sum_probs=89.3
Q ss_pred HHHhcCC---cHHHHHHHhcCCHHHHHHHHHHHHHccCCC-hhHHHHhhhhCcHHHHHHhhcC----CChHHHHHHHHHH
Q 003146 261 EKMANVG---SLSALVKSLTRDVEEQREAVGLLLDLSDLP-AVWRRIGRIQGCIVMLVSMLSG----NDPVASHDAGKLL 332 (844)
Q Consensus 261 ~~i~~~g---~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~s----~d~~~~~~A~~~L 332 (844)
+.+...| ++..+...+..+.-....|+..|..+.... ... ...+..+..|+.+ +++.+...|+-++
T Consensus 386 Dal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~ 459 (618)
T PF01347_consen 386 DALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSL 459 (618)
T ss_dssp HHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHH
Confidence 3344445 455556666553222233444454443322 111 2334455666654 3455666666565
Q ss_pred HHhc----cCC------ccHHHHHHcCChHHHHHHhc----cCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHH
Q 003146 333 NALS----SNT------QNALHMAEAGYFKPLVQYLK----EGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRM 398 (844)
Q Consensus 333 ~nLs----~~~------~~~~~i~~~g~i~~Lv~~L~----~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 398 (844)
..|. ... .....-....+++.+...|. .++...+..+..+|+|+.. ...++.|..+
T Consensus 460 ~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~ 529 (618)
T PF01347_consen 460 GSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPY 529 (618)
T ss_dssp HHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTT
T ss_pred HHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhH
Confidence 5553 221 01111222345666666665 3455667788899999653 3577888888
Q ss_pred hhcC---CHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHH
Q 003146 399 FRVG---KLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILA 459 (844)
Q Consensus 399 L~~~---~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~ 459 (844)
+.+. +...|..|+.||..+..... . -+.+.|+.++.+... +..+|..|..+|.
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~----~v~~~l~~I~~n~~e-~~EvRiaA~~~lm 585 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCP---E----KVREILLPIFMNTTE-DPEVRIAAYLILM 585 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-H---H----HHHHHHHHHHH-TTS--HHHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCc---H----HHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Confidence 8766 55778899999987754321 1 123457777766554 3456666655544
No 218
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.19 E-value=2e+02 Score=35.29 Aligned_cols=421 Identities=14% Similarity=0.146 Sum_probs=219.8
Q ss_pred hcCCHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCC--ChHHHHHHHHHHHHhcc-C-Cc-----------
Q 003146 276 LTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGN--DPVASHDAGKLLNALSS-N-TQ----------- 340 (844)
Q Consensus 276 L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~--d~~~~~~A~~~L~nLs~-~-~~----------- 340 (844)
+.++...|+.|=.-|.++.+ ..|.++.|.+...++ +..++..|+--+.|.-. + +.
T Consensus 14 ~d~d~~~R~~AE~~L~q~~K----------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 14 IDSDAKERKAAEQQLNQLEK----------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred cCCChHHHHHHHHHHHHhhc----------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 33456677777777776655 478888888877653 23456777777888742 1 11
Q ss_pred -cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhh-cCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 003146 341 -NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGE-DGAIEPLVRMFRVGKLEAKLSALNALQNLS 418 (844)
Q Consensus 341 -~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 418 (844)
.-+.++. +.++..+-.++.-.|..-..+|..+-.++.. .. .|.++-.-.+|++++...-..|+-+|+.|+
T Consensus 84 e~dk~~ir----enIl~~iv~~p~~iRvql~~~l~~Ii~~D~p----~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~ 155 (1010)
T KOG1991|consen 84 EEDKAVIR----ENILETIVQVPELIRVQLTACLNTIIKADYP----EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLF 155 (1010)
T ss_pred hHHHHHHH----HHHHHHHHhCchHHHHHHHHHHHHHHhcCCc----ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 1122222 2344555555666676666677666555432 11 467777888899988888889999999998
Q ss_pred cCc-----ccHH---HHHHcCChHHHHHH----hhccCCcchhhHHHHHHHHHHHhcCh--hhhcccchHHH----HHHh
Q 003146 419 LLA-----ENIQ---RLVISGIVSPLLQL----LFSVTSVLMTLREPASAILARIAQSE--SILVNKDVAQQ----MLSL 480 (844)
Q Consensus 419 ~~~-----~~~~---~i~~~g~v~~Lv~l----L~~~~~~~~~l~~~a~~~L~~l~~~~--~~l~~~~~i~~----Lv~l 480 (844)
... +.++ .+++ ...|.+.++ +...+..+..+....+.+.+.++..+ ..+...+.+.. ++.+
T Consensus 156 k~ye~k~~eeR~~l~~~v~-~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i 234 (1010)
T KOG1991|consen 156 KTYEWKKDEERQPLGEAVE-ELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSI 234 (1010)
T ss_pred HHHhhccccccccHHHHHH-HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHH
Confidence 532 2222 2222 234544443 33343333444555666666665553 33344444333 3333
Q ss_pred hccC-----------------ChHHHHHHHHHHHHhhcCCChh-----HHH---HHHH---hCCcHHHHHHHhcc-----
Q 003146 481 LNLC-----------------SPTIQYHLLHALNSIAAHSSAS-----NVR---RKMK---ENGAIHLLLPFLME----- 527 (844)
Q Consensus 481 L~~~-----------------~~~~~~~a~~~L~~L~~~~~~~-----~~~---~~i~---~~g~i~~Lv~ll~~----- 527 (844)
++.+ -.+.+..|+..|..++...+.. +++ +... -.|+.+.+++.+..
T Consensus 235 ~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~ 314 (1010)
T KOG1991|consen 235 LNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQL 314 (1010)
T ss_pred HcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3321 1246788999998887655421 111 1111 23455555555542
Q ss_pred -CCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHH-----HHhcCCC--------CHHH--H-------------HH
Q 003146 528 -TNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILV-----DITLSST--------SENE--K-------------AA 578 (844)
Q Consensus 528 -~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv-----~lL~~~~--------~~~~--~-------------~~ 578 (844)
-++++-..+...+.++..+.. ....+.+ .+..++ .++.-++ |+.+ + .+
T Consensus 315 yls~rvl~~~l~fl~~~Vs~~~--twkll~P-Hl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~A 391 (1010)
T KOG1991|consen 315 YLSDRVLYYLLNFLEQCVSHAS--TWKLLKP-HLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTA 391 (1010)
T ss_pred cCCHHHHHHHHHHHHHhccHHH--HHHHhhh-HHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHH
Confidence 235666666666665544322 1222221 111111 1111111 2211 1 13
Q ss_pred HHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCC-CCCCchhHHHHHHHHHHhccCC-CCHHHHHHHHHcCCHHHH
Q 003146 579 AVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTIT-KTHSTPWLVESVAGILIRFTDP-SDKKLQQYSVQHGVIRLL 656 (844)
Q Consensus 579 a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~-~~~~~~~l~e~a~~aL~~l~~~-~~~~~~~~i~~~g~i~~L 656 (844)
|...+..++.. |..=.=.++++-+++.+..-..+ .......-++.|..+++.++.- ..+..-+-..+.=+++.+
T Consensus 392 a~~~l~~~~~K----R~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 392 ALDFLTTLVSK----RGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred HHHHHHHHHHh----cchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 33333333221 10001134555566666521111 1111112345777777666532 111111122233344555
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc-CC
Q 003146 657 VKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE-GK 735 (844)
Q Consensus 657 v~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~-~~ 735 (844)
.-.+++...-.|.+|++.++.++.-.-... ..-..++..-..+|. +.
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~--------------------------------~~l~~ale~t~~~l~~d~ 515 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDP--------------------------------NNLSEALELTHNCLLNDN 515 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCCh--------------------------------HHHHHHHHHHHHHhccCC
Confidence 556677888899999999999984221100 011235666777776 77
Q ss_pred ChhhHHHHHHHHHhhhccc
Q 003146 736 EREADETVLGALASLLQDE 754 (844)
Q Consensus 736 ~~~v~~~A~~AL~~L~~~~ 754 (844)
+-.|+..|+.||..+..+.
T Consensus 516 ~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 516 ELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred cCchhhHHHHHHHHHHhcc
Confidence 7789999999999999765
No 219
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.67 E-value=1.1e+02 Score=36.18 Aligned_cols=170 Identities=15% Similarity=0.129 Sum_probs=93.2
Q ss_pred hHHHHHHHhcCCC-CHHHH-HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhcc
Q 003146 559 YLNILVDITLSST-SENEK-AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 559 ~l~~Lv~lL~~~~-~~~~~-~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~ 636 (844)
.+..+.+.+.... +..+. .....++..+...+++ .+..+..++.++..... ..+...++-+++.+.
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~---------~l~~l~~l~~~~~~~~~---~~l~~sa~l~~~~lv 425 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEE---------ILKALFELAESPEVQKQ---PYLRESALLAYGSLV 425 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHH---------HHHHHHHHhcCcccccc---HHHHHHHHHHHHHHH
Confidence 6666777676533 22222 2233334444444444 34566677765532221 134444454444433
Q ss_pred CC---CCHHHHHHHHHcCCHHHHHHHhcc----CCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCccccc
Q 003146 637 DP---SDKKLQQYSVQHGVIRLLVKLLSS----ESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDG 709 (844)
Q Consensus 637 ~~---~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~ 709 (844)
.. ..+.+. ......+++.|.+.|.. .+...+..+..||||++...
T Consensus 426 ~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~--------------------------- 477 (574)
T smart00638 426 RRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS--------------------------- 477 (574)
T ss_pred HHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh---------------------------
Confidence 21 111111 11223467777777643 35566778889999988422
Q ss_pred ccCcccchHhhhcCCchHHHHhhc---CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh--hcCCHHHH
Q 003146 710 YCFVKSTFCLVKAGAVSPLIQVLE---GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL--ESGNAKAQ 784 (844)
Q Consensus 710 ~~~~~~~~~l~~~~ai~~Lv~lL~---~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll--~~~~~~~~ 784 (844)
.+..|..++. ..+..+|.+|+.||-.++.... .. .-+.+..++ ...++++|
T Consensus 478 --------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-~~---------v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 478 --------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-RK---------VQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred --------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-hH---------HHHHHHHHHcCCCCChHHH
Confidence 3455555554 2346799999999998874321 11 234466666 35678899
Q ss_pred HHHHHHHH
Q 003146 785 EKALWILE 792 (844)
Q Consensus 785 ~~A~~~L~ 792 (844)
..|..+|.
T Consensus 534 iaA~~~lm 541 (574)
T smart00638 534 MAAVLVLM 541 (574)
T ss_pred HHHHHHHH
Confidence 88887774
No 220
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=75.21 E-value=2.7 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhh
Q 003146 739 ADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLE 777 (844)
Q Consensus 739 v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~ 777 (844)
||.+|+.+|+.+.... ++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd~~-------------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR-------------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH-------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH-------------HHHHHHHHhc
Confidence 6889999999998865 6888887774
No 221
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.13 E-value=2.3e+02 Score=35.52 Aligned_cols=142 Identities=19% Similarity=0.150 Sum_probs=99.7
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhh-cCCCCCCCCchhHHHHHHHHHHhc
Q 003146 560 LNILVDITLSS---TSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAAT-SSTITKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 560 l~~Lv~lL~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~-~~~~~~~~~~~~l~e~a~~aL~~l 635 (844)
.+-++...+++ ++++.+.+|.-+|+.+..-+.+. . +..+|.|...+. ++++. ++-+++-+++.+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----c-es~l~llftimeksp~p~-------IRsN~VvalgDl 988 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----C-ESHLPLLFTIMEKSPSPR-------IRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----H-HHHHHHHHHHHhcCCCce-------eeecchheccch
Confidence 34455666543 47889998888898885533332 2 345788888887 44432 344888888887
Q ss_pred cCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCccc
Q 003146 636 TDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKS 715 (844)
Q Consensus 636 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~ 715 (844)
+..-+. . -.-.-+.|..-|++.++.||+.|...|.+|-.++
T Consensus 989 av~fpn-l-----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------------------------------- 1029 (1251)
T KOG0414|consen 989 AVRFPN-L-----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--------------------------------- 1029 (1251)
T ss_pred hhhccc-c-----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh---------------------------------
Confidence 764211 1 1134467889999999999999999999988543
Q ss_pred chHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccc
Q 003146 716 TFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE 754 (844)
Q Consensus 716 ~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~ 754 (844)
.+.--|.++.+..+|.|++++++.-|-.-...|...+
T Consensus 1030 --miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1030 --MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred --hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 2234578899999999999999998886666666544
No 222
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=75.13 E-value=6.7 Score=39.47 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHccCCChhHHHHhhhh------CcHHHHHHhhc-CCChHHHHHHHHHHHHhccCCcc--HHHHHHcCChH
Q 003146 282 EQREAVGLLLDLSDLPAVWRRIGRIQ------GCIVMLVSMLS-GNDPVASHDAGKLLNALSSNTQN--ALHMAEAGYFK 352 (844)
Q Consensus 282 ~~~~A~~~L~~Ls~~~~~~~~i~~~~------g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~~~~~--~~~i~~~g~i~ 352 (844)
-|+.|+.+|..|+-.+.|.+.|..+. ..+..|+++|. .+++..++-|+..|.||+..++. +..-.+.++|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 58899999999998887766666522 23555666665 57889999999999999986654 33334789999
Q ss_pred HHHHHhccCCH
Q 003146 353 PLVQYLKEGSD 363 (844)
Q Consensus 353 ~Lv~~L~~~~~ 363 (844)
.|+.++.+...
T Consensus 220 ~Li~FiE~a~~ 230 (257)
T PF12031_consen 220 HLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999977643
No 223
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.87 E-value=85 Score=36.47 Aligned_cols=163 Identities=18% Similarity=0.111 Sum_probs=96.5
Q ss_pred HhcCCHHHHHHHHHHHHHccCCChhHHHHhh---hhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCCh
Q 003146 275 SLTRDVEEQREAVGLLLDLSDLPAVWRRIGR---IQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYF 351 (844)
Q Consensus 275 ~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~---~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i 351 (844)
+++.+.+++--|+..|+.+.++......+.. ....+..++..++ .++..+..++++|.|+-.++.++..++.. .
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~ 629 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--L 629 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--H
Confidence 3344666777788888887776543333222 1335556666655 66777888999999999887777777643 2
Q ss_pred HHHHHHh---ccC-CHHHHHHHHHHHHHhhcC--chhhhhhhhcCchHHHHHHhhc---C--CHHHHHHHHHHHHHhhcC
Q 003146 352 KPLVQYL---KEG-SDMSKILMATALSRMELT--DQSRASLGEDGAIEPLVRMFRV---G--KLEAKLSALNALQNLSLL 420 (844)
Q Consensus 352 ~~Lv~~L---~~~-~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~---~--~~~~~~~A~~aL~nLs~~ 420 (844)
..+...+ +++ +..++...+....|++.. ..+-+ .|..+.|...+.. . +.+.....+.||.+|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 2222222 223 334555444444455431 11111 2444444444432 1 223455678899999998
Q ss_pred cccHHHHHHcCChHHHHHHhhccC
Q 003146 421 AENIQRLVISGIVSPLLQLLFSVT 444 (844)
Q Consensus 421 ~~~~~~i~~~g~v~~Lv~lL~~~~ 444 (844)
+.+..++.+.--|..++.-+++..
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhc
Confidence 888777777666777777776554
No 224
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=74.52 E-value=10 Score=30.74 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCC-HHHHHHHHHHHHHhhcCchhhhhhhhcC
Q 003146 325 SHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGS-DMSKILMATALSRMELTDQSRASLGEDG 390 (844)
Q Consensus 325 ~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 390 (844)
.+.|.+++.+.+..+.....+.+.+.++.++++..+.+ ..+|-.+..+|+-++.+.+....+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 45788999999998888777778899999999987654 5678889999999999888877766544
No 225
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.20 E-value=9.9 Score=42.68 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=34.0
Q ss_pred CchHHHHh-hcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh-hcCCHHHHHHHHHHHH
Q 003146 724 AVSPLIQV-LEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEKALWILE 792 (844)
Q Consensus 724 ai~~Lv~l-L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~ 792 (844)
++..|+.. .++.|++||.+|..||+-+..+. -+.+...+++| ++.|+-+|.-.+.+|+
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----------~~~lv~tvelLs~shN~hVR~g~AvaLG 611 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----------RDLLVGTVELLSESHNFHVRAGVAVALG 611 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC-----------cchhhHHHHHhhhccchhhhhhhHHHhh
Confidence 45555555 45667777777777777655443 22455556666 5566666655555554
No 226
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=73.15 E-value=13 Score=30.16 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcC-CHHHHHHHHHHHHHhhcCcccHHHHHHcC
Q 003146 367 ILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVG-KLEAKLSALNALQNLSLLAENIQRLVISG 431 (844)
Q Consensus 367 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~~~~~i~~~g 431 (844)
..+.+++++++..+..-..+.+.+.++.++++.... ...+|-.|..+|.-++...+..+.+-+.|
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 468899999999888888788889999999999854 45788899999999998887776665554
No 227
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.83 E-value=38 Score=32.53 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=54.1
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNL 586 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L 586 (844)
.+..+..++++++++.|-.++.++.......+.++...-+...+..++.+|..+++......++.+|..|
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999988877544443333448888999999877777777777766655
No 228
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.60 E-value=62 Score=31.80 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=54.1
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHH
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEEL 551 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i 551 (844)
++.++++.-+.+..++..|+.++..+-+.+= +.-...+|.|+.+..++++.++..|..++..+....+.-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGL-------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 4556666667888999999999888776641 1111268999999999999999999999999876555433
No 229
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.58 E-value=62 Score=38.67 Aligned_cols=179 Identities=14% Similarity=0.117 Sum_probs=106.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHH
Q 003146 396 VRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQ 475 (844)
Q Consensus 396 v~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~ 475 (844)
+..+.++-+..|-.|+..|..+.....-+..+...+++...++.|.+.++- +--.|...+..|+.- ..++.++
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy---vyLnaI~gv~~Lcev----y~e~il~ 805 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY---VYLNAIRGVVSLCEV----YPEDILP 805 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce---eeHHHHHHHHHHHHh----cchhhHH
Confidence 334445556778888899999988766666677788888888888877652 223444433333321 3455667
Q ss_pred HHHHhh-ccC---ChHHHHHHHHHHHHhhcCCCh--hHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH
Q 003146 476 QMLSLL-NLC---SPTIQYHLLHALNSIAAHSSA--SNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 476 ~Lv~lL-~~~---~~~~~~~a~~~L~~L~~~~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
.+.+.- +.. .++.+...-.++.++...-+. ..++. -.+.......++++.+.|..++..+.+|+.-..-
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-----VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-----HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 666632 221 134444444555554433211 12222 2456666677777777899999888888765442
Q ss_pred HHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 003146 550 ELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLP 587 (844)
Q Consensus 550 ~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 587 (844)
...+.+.+ .+..++.+...+++.-++.+|+-.+..+-
T Consensus 881 ~vsd~~~e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 881 QVSDFFHE-VLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred hhhHHHHH-HHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 22222222 55566777776777788888777666553
No 230
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.58 E-value=50 Score=32.21 Aligned_cols=160 Identities=23% Similarity=0.211 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhhhh-hhHHHHHHh----c------hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 003146 531 NIRAAALNLVCTLSKD-VYEELAEQL----G------DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKK 599 (844)
Q Consensus 531 ~v~~~A~~~L~~ls~~-~~~~i~~~l----~------~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~ 599 (844)
++|..|..+|..+.+. .+..+..++ . ...-..|+..+-.++++.+|.+|+.++..|-.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--------- 71 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--------- 71 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc---------
Confidence 3678888888888776 333222221 1 1133456666666788899999999888884432
Q ss_pred CCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHH
Q 003146 600 TNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE-SVVAKSSASISLAQL 678 (844)
Q Consensus 600 ~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~Aa~aL~~l 678 (844)
+..+....+.......+++ +-...+..+. ..-..|+..|+.+ +..+......+++.+
T Consensus 72 ----k~~L~~Ae~~~~~~~sFts-lS~tLa~~i~-----------------~lH~~Ll~~L~~E~~~~~l~q~lK~la~L 129 (182)
T PF13251_consen 72 ----KPFLAQAEESKGPSGSFTS-LSSTLASMIM-----------------ELHRGLLLALQAEKSPPVLTQLLKCLAVL 129 (182)
T ss_pred ----HHHHHHHHhcCCCCCCccc-HHHHHHHHHH-----------------HHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 2222223222211111111 1111111111 2234566666655 666777788888888
Q ss_pred hhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCc----hHHHHhhcCCChhhHHHHHHHHHhhhccc
Q 003146 679 SQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAV----SPLIQVLEGKEREADETVLGALASLLQDE 754 (844)
Q Consensus 679 s~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai----~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~ 754 (844)
..+.+..+ . ..|.+ ..+..++.+.|.+++.+++.+++-+..-.
T Consensus 130 v~~tPY~r----------------------L-----------~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 130 VQATPYHR----------------------L-----------PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HccCChhh----------------------c-----------CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 87655433 1 12333 44445567899999999999998887543
No 231
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=69.49 E-value=18 Score=35.82 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=93.7
Q ss_pred HHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC-----CChHHHHHHHHHHHHhccCCcc--HHHHHHcCChHHHHH
Q 003146 284 REAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG-----NDPVASHDAGKLLNALSSNTQN--ALHMAEAGYFKPLVQ 356 (844)
Q Consensus 284 ~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-----~d~~~~~~A~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ 356 (844)
..|+..|.-++.+|+.+..+.+ +..--.|..+|.. .-.-.+..+.+++..|..++.. ...+.....+|.+++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4678888888999999888876 5543334444532 2234566788888888875543 444556778999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhcCchhhhhhh----hcCch----HHHHH-HhhcCCHHHHHHHHHHHHHhhcCcccHH
Q 003146 357 YLKEGSDMSKILMATALSRMELTDQSRASLG----EDGAI----EPLVR-MFRVGKLEAKLSALNALQNLSLLAENIQ 425 (844)
Q Consensus 357 ~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~----~~g~i----~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~~~~ 425 (844)
.+..|++-.+..++.++..+-.+|.+-..+. +.-++ ..++. +.+.+..+.-+.++++-..||.++..+.
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 9999998888889999888877765433332 22222 22222 2344566777778887777777666544
No 232
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.41 E-value=1.7e+02 Score=31.69 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=104.5
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHccC-CC-hhHHHHhhhhCc-HHHHHHhhcC-----CC--------hHHHHHHHHH
Q 003146 269 LSALVKSLTRD-VEEQREAVGLLLDLSD-LP-AVWRRIGRIQGC-IVMLVSMLSG-----ND--------PVASHDAGKL 331 (844)
Q Consensus 269 i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~-~~-~~~~~i~~~~g~-i~~Lv~lL~s-----~d--------~~~~~~A~~~ 331 (844)
+..+.+.|++. ......++..|..+.. .+ ...+.+...-+. .+.|..++.. ++ +.+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 56677777764 3455577788888876 43 455555543332 4556666631 11 2777777776
Q ss_pred HHHhcc--CCccHHHHH-HcCChHHHHHHhccCCHHHHHHHHHHHHH-hhcC----chhhhhhhhcCchHHHHHHhhcCC
Q 003146 332 LNALSS--NTQNALHMA-EAGYFKPLVQYLKEGSDMSKILMATALSR-MELT----DQSRASLGEDGAIEPLVRMFRVGK 403 (844)
Q Consensus 332 L~nLs~--~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~-Ls~~----~~~~~~i~~~g~i~~Lv~lL~~~~ 403 (844)
+..+.. ++..+..+. +.+.+..+.+.|..++.++......+|.. +..+ ...|..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666554 333466666 46678889999999888887777777764 3222 245777778889999999887766
Q ss_pred H----HHHHHHHHHHHHhhcCccc
Q 003146 404 L----EAKLSALNALQNLSLLAEN 423 (844)
Q Consensus 404 ~----~~~~~A~~aL~nLs~~~~~ 423 (844)
+ .+...+-..|..+|.++.+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 7788888899999988764
No 233
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.25 E-value=1e+02 Score=37.61 Aligned_cols=249 Identities=20% Similarity=0.237 Sum_probs=141.7
Q ss_pred HHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCCH------
Q 003146 207 LRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDV------ 280 (844)
Q Consensus 207 l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~~------ 280 (844)
+..+.+++..+++.|.+.+.+..++..+-+ ..-|-.-+++++.|+...+... ...-+-.+|..|+++.
T Consensus 666 LisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~Isg 739 (2799)
T KOG1788|consen 666 LISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISG 739 (2799)
T ss_pred HHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccch
Confidence 556666777778888887776666666632 4455666777777765544311 1112344666665511
Q ss_pred -------HHHHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHHhhcC----------CChHHHHHHHHHHHHh-----cc
Q 003146 281 -------EEQREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVSMLSG----------NDPVASHDAGKLLNAL-----SS 337 (844)
Q Consensus 281 -------~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s----------~d~~~~~~A~~~L~nL-----s~ 337 (844)
+..+....++|.... +...++.+++ +|+...|...|.. .|.-+-..-...|..+ +.
T Consensus 740 eqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavce 818 (2799)
T KOG1788|consen 740 EQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCE 818 (2799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhh
Confidence 112344566776654 4567777776 8888888776631 1211112222333332 24
Q ss_pred CCccHHHH-------------HHcC---------ChHHHHH----HhccCCHHHHHHHHHHHHHhhcC-----------c
Q 003146 338 NTQNALHM-------------AEAG---------YFKPLVQ----YLKEGSDMSKILMATALSRMELT-----------D 380 (844)
Q Consensus 338 ~~~~~~~i-------------~~~g---------~i~~Lv~----~L~~~~~~~~~~aa~~L~~Ls~~-----------~ 380 (844)
+..|+..+ .+.| .+..+.+ .+..+.-.....|+..++.+-.+ .
T Consensus 819 nasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfn 898 (2799)
T KOG1788|consen 819 NASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFN 898 (2799)
T ss_pred cchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcC
Confidence 45554432 3344 1222211 12222222233455556655321 1
Q ss_pred hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc-CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHH
Q 003146 381 QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL-LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILA 459 (844)
Q Consensus 381 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~ 459 (844)
..+..|...|++..|++++-...+..+..-+..+-.++. +|.|.......|++..|++++.--...+..+...+..++.
T Consensus 899 pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 346778889999999999988888888888888888886 4667777778899998888765332222224445555544
Q ss_pred HHh
Q 003146 460 RIA 462 (844)
Q Consensus 460 ~l~ 462 (844)
-|+
T Consensus 979 mLg 981 (2799)
T KOG1788|consen 979 MLG 981 (2799)
T ss_pred HHh
Confidence 444
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=68.54 E-value=1.4e+02 Score=30.42 Aligned_cols=139 Identities=19% Similarity=0.143 Sum_probs=79.6
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 003146 434 SPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK 513 (844)
Q Consensus 434 ~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~ 513 (844)
|.|+.-+....+ .......+..|..++.++. ....-+++.|..+...++...+.-+.+.+..+-..++ ..-
T Consensus 3 ~~L~~~l~~~~~--~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~--r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISD--PELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND--RHF---- 73 (234)
T ss_pred HHHHHHhcCCCC--hHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc--hHH----
Confidence 444443333332 3466788888888887763 3334456666677777777777777788777766542 111
Q ss_pred hCCcHHHHHHH--h------ccCC--HHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 003146 514 ENGAIHLLLPF--L------METN--ANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 514 ~~g~i~~Lv~l--l------~~~~--~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L 583 (844)
+.+..++.. + .+++ .+.....+..++.++...++ -+...+..+..+|..+.++..+..+..++
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233333333 0 1111 13334444555555554443 23336667777774356667777788888
Q ss_pred hcCCC
Q 003146 584 SNLPV 588 (844)
Q Consensus 584 ~~L~~ 588 (844)
..|..
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 87763
No 235
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=68.32 E-value=34 Score=37.84 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=102.7
Q ss_pred HHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcC-------------CCC-------CCC-------CchhHHHHHHHHHH
Q 003146 581 GILSNLPVSNKKATELLKKTNLLPSLISAATSS-------------TIT-------KTH-------STPWLVESVAGILI 633 (844)
Q Consensus 581 ~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~-------------~~~-------~~~-------~~~~l~e~a~~aL~ 633 (844)
..|-.+....+.....+.+.+++..+++.+... ... ... ....+.+..+..+.
T Consensus 6 ~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~l~ 85 (379)
T PF06025_consen 6 RFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKFLS 85 (379)
T ss_pred HHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHHHH
Confidence 333334334555566667778888887776421 000 000 01234445555555
Q ss_pred hccC--CCCHHHHHHHHH-cCCHHHHHHHhccC---CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCccc
Q 003146 634 RFTD--PSDKKLQQYSVQ-HGVIRLLVKLLSSE---SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVH 707 (844)
Q Consensus 634 ~l~~--~~~~~~~~~i~~-~g~i~~Lv~lL~~~---~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h 707 (844)
+... +...+..+-+.+ ..+...|..+++.. .+.+-..|+..+..+-.+.+..-
T Consensus 86 ~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~--------------------- 144 (379)
T PF06025_consen 86 HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSF--------------------- 144 (379)
T ss_pred HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchh---------------------
Confidence 5555 222222223444 45566777888765 46788888888888887776521
Q ss_pred ccccCcccchHhhhcCCchHHHHhhc-CC---ChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcC
Q 003146 708 DGYCFVKSTFCLVKAGAVSPLIQVLE-GK---EREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESG 779 (844)
Q Consensus 708 ~~~~~~~~~~~l~~~~ai~~Lv~lL~-~~---~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~ 779 (844)
..+.++|.++.+++.+. .+ ..++....-.+|..|.-+. .|.+.+.+.+.++.+++++.++
T Consensus 145 ---------~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~---~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 145 ---------SILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN---RGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred ---------HHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH---HHHHHHHhcChHHHHHHHhCCH
Confidence 45678999999999988 43 3455555556666666554 5888888999999999988653
No 236
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.06 E-value=1.4e+02 Score=35.43 Aligned_cols=171 Identities=22% Similarity=0.232 Sum_probs=92.5
Q ss_pred cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHhhccC-CcchhhHHHHHHHHHHHhcCh-
Q 003146 389 DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLLFSVT-SVLMTLREPASAILARIAQSE- 465 (844)
Q Consensus 389 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~l~~~a~~~L~~l~~~~- 465 (844)
..++..+.+++..+.....+ |...|..|.... .--..+ +..+..++.... .....++..|.-.++.+...-
T Consensus 394 ~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 34556666777664443333 445555554332 211222 233455554321 111335555665555554321
Q ss_pred ------------hhhcccchHHHHHHhhc----cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC-
Q 003146 466 ------------SILVNKDVAQQMLSLLN----LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET- 528 (844)
Q Consensus 466 ------------~~l~~~~~i~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~- 528 (844)
........++.+...+. .++...+..++.+|.|+... ..++.|..++...
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------------~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------------ESIPVLLPYIEGKE 534 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------------GGHHHHHTTSTTSS
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------------hhhHHHHhHhhhcc
Confidence 11112334555555554 45667888999999998643 2688888888877
Q ss_pred --CHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCC-CCHHHHHHHHHHHhcC
Q 003146 529 --NANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSS-TSENEKAAAVGILSNL 586 (844)
Q Consensus 529 --~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~-~~~~~~~~a~~~L~~L 586 (844)
+..+|..|+++|+.+....++.+ .+.|..++.+. .+.++|.+|..+|..-
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 45899999999988866655443 33455666543 4568888887777665
No 237
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.91 E-value=46 Score=34.95 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 003146 518 IHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELL 597 (844)
Q Consensus 518 i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l 597 (844)
+...+..|.+.+=+.+..++..++.|+...++.....+.+ .+..+++-+++..+ .+-.+|+.+++.+.. .....+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS-~VsraA~~t~~difs---~ln~~i 164 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRS-AVSRAACMTLADIFS---SLNNSI 164 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHH-HHHHHHHHHHHHHHH---HHHHHH
Confidence 4445556666676788888999999998888665555543 55667777765333 344455666665522 222222
Q ss_pred HhCCChHHHHHHh-hcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 003146 598 KKTNLLPSLISAA-TSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLA 676 (844)
Q Consensus 598 ~~~~~v~~L~~ll-~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~ 676 (844)
.+ .+..++..| ..+.. ..+ =+.+.|-.+|..+.....|. .+++.|...+...++.++..++.+..
T Consensus 165 ~~--~ld~lv~~Ll~ka~~-dnr---Fvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 165 DQ--ELDDLVTQLLHKASQ-DNR---FVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HH--HHHHHHHHHHhhhcc-cch---HHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccc
Confidence 22 334444444 33332 222 25566777777666544342 24566677778888888877766544
Q ss_pred H
Q 003146 677 Q 677 (844)
Q Consensus 677 ~ 677 (844)
+
T Consensus 231 ~ 231 (334)
T KOG2933|consen 231 R 231 (334)
T ss_pred c
Confidence 3
No 238
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=66.74 E-value=10 Score=35.17 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=18.7
Q ss_pred hhHHhhhhcCCCCchHHHHHHHHHH
Q 003146 810 VVLIDLAQNGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 810 ~~Lv~ll~~~~~~~~~~aa~~L~~l 834 (844)
.+||++++++|..+...|+++|.+.
T Consensus 97 ~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 97 QPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 6999999988999999999998875
No 239
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.54 E-value=38 Score=32.52 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=71.7
Q ss_pred CchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcC--ChHHHHHHhh-cCCHHHHHHHHHHHHHHHhhh--
Q 003146 724 AVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLS--GTQAIIKVLE-SGNAKAQEKALWILERIFRIE-- 798 (844)
Q Consensus 724 ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g--~i~~lv~ll~-~~~~~~~~~A~~~L~~i~~~~-- 798 (844)
.+..+..+|+++++..|-.++.-+..+.+...| ..+.+.+ .+..++.+++ ..++.+.+.|..+|.+||...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~----e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW----EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 457788999999999999999888888776422 3343333 4677888884 466788999999999998653
Q ss_pred --hhhHhh-ccccc---hhHHhhhhcCCCCchHHHHHHHHHH
Q 003146 799 --EHRVKY-GESAQ---VVLIDLAQNGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 799 --~~~~~~-~~~a~---~~Lv~ll~~~~~~~~~~aa~~L~~l 834 (844)
+...+. .+..+ ..+++++++ ......+..+|..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 222222 22221 466777666 55677777777766
No 240
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.13 E-value=36 Score=38.73 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=77.1
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc---Cchhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL---TDQSR 383 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~---~~~~~ 383 (844)
.|.+..+++.+.++|..++.+.+.+|..++..-.-.....-.|.+..|.+.+-+..+.+|..|..+|..+-. +++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 677788888889999999999999998887655444455567888888888888888899999999887643 33333
Q ss_pred hhhhhcCchHHHHHHhhc-CCHHHHHHHHHHHHHhhcCcccH
Q 003146 384 ASLGEDGAIEPLVRMFRV-GKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 384 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
. ...|+.+++. ++.++|+. +|.|+..++...
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~---allni~vdnsT~ 201 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRL---ALLNISVDNSTY 201 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcc
Confidence 2 2356666654 44566765 567777655443
No 241
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=64.72 E-value=1.3e+02 Score=31.21 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHhhcCcccHHHHHHc-C-ChHHHHHHhhccCC-cchhhHHHHHHHHHHHhcCh--hhhcc---cch
Q 003146 402 GKLEAKLSALNALQNLSLLAENIQRLVIS-G-IVSPLLQLLFSVTS-VLMTLREPASAILARIAQSE--SILVN---KDV 473 (844)
Q Consensus 402 ~~~~~~~~A~~aL~nLs~~~~~~~~i~~~-g-~v~~Lv~lL~~~~~-~~~~l~~~a~~~L~~l~~~~--~~l~~---~~~ 473 (844)
..+..+.-+++++.|+-.++..+..+.+. + .+...+..+..... ....++..++.++.|++..- .-... ...
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 35677888999999999998888887753 2 23333332222210 02457788888899987542 11011 123
Q ss_pred HHHHHHhhcc--CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcH
Q 003146 474 AQQMLSLLNL--CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAI 518 (844)
Q Consensus 474 i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i 518 (844)
+..+.+.+.. .+++....++-+|++|...+ ..........|+-
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~--~~~~~~~~~l~~~ 246 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSS--DSAKQLAKSLDVK 246 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS--HHHHHHCCCCTHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccC--hhHHHHHHHcChH
Confidence 4555553322 68899999999999999664 4444443333333
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=64.72 E-value=1.4e+02 Score=35.18 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=88.3
Q ss_pred cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh
Q 003146 389 DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL 468 (844)
Q Consensus 389 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l 468 (844)
..++|.|..-+++.+..+++.++..+...+..-+ ...++.-++|.+-.+-...+. ..++..++.+++.+...-+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~--~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTN--LYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccc--hHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888899999999999888875433 334455567777776444442 457788888888887332111
Q ss_pred cccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHH
Q 003146 469 VNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNAN 531 (844)
Q Consensus 469 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 531 (844)
.--+-+..+..-.+..+|.+....+++...+.-.- .....+.-+.++|.++.+...+.-.
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~---~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALII---YSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc---ccceeeehhhhhhhhhhhhhccccc
Confidence 11122344444455678999988888887765431 1113445566788888887766643
No 243
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=64.20 E-value=1.6e+02 Score=32.67 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=83.0
Q ss_pred hHHHHHHHhcCCC--CHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhh-cCCCCCCCCchhHHHHHHHHHHhc
Q 003146 559 YLNILVDITLSST--SENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAAT-SSTITKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 559 ~l~~Lv~lL~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~-~~~~~~~~~~~~l~e~a~~aL~~l 635 (844)
.+..|..++.+.. ...+-..|+.++..+..++|..-..+.+.|.++.+++.+. .+-. + ..++.-..-.++..+
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~-~---s~e~l~~lP~~l~Ai 182 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL-P---SSEVLTSLPNVLSAI 182 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC-C---cHHHHHHHHHHHhHH
Confidence 4555666666543 3567788999999999999999999999999999999997 3321 1 224555555666666
Q ss_pred cCCCCHHHHHHHHHcCCHHHHHHHhccCCH-H-HHH-HHHHHHH----HHhhcCccccc
Q 003146 636 TDPSDKKLQQYSVQHGVIRLLVKLLSSESV-V-AKS-SASISLA----QLSQNSLSLRK 687 (844)
Q Consensus 636 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~-vk~-~Aa~aL~----~ls~~~~~~~~ 687 (844)
+- |.+-.+.+.+.+.++.+.+++.+.+- . .+. ..+..++ .|.++.+.++.
T Consensus 183 cL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~ 239 (379)
T PF06025_consen 183 CL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKP 239 (379)
T ss_pred hc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHH
Confidence 65 55556778889999999999876532 1 221 3444444 35555555443
No 244
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=62.95 E-value=36 Score=31.82 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=58.8
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNANIRAAALNLVCTLSK 545 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls~ 545 (844)
.++..|..=+.+.+|.++..|+..|-.+..+.+ ......+....++..|+.++.. .++.|+...+.++...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 345566666778899999999999988887765 6677777888999999999988 677899999998876543
No 245
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=62.59 E-value=45 Score=30.67 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=57.5
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC---CHHHHHHHHHHHHHhhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET---NANIRAAALNLVCTLSK 545 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~A~~~L~~ls~ 545 (844)
.++..|-.-|+.++|.++..|+.+|-.+..+.+ ......+.....+..|+.++... ++.|+..+..++...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg-~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCG-KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345666677888999999999999988887764 55677777777888899999763 56899999998876654
No 246
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=62.34 E-value=1.9e+02 Score=29.56 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=75.7
Q ss_pred HHHHHH-hhcCCChHHHHHHHHHHHHhccCC-ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhh
Q 003146 310 IVMLVS-MLSGNDPVASHDAGKLLNALSSNT-QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLG 387 (844)
Q Consensus 310 i~~Lv~-lL~s~d~~~~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (844)
+|.|+. +-+..++..+.....+|..++.++ .+...+ ++.|..+...+....+..+.+.+..+-..++ +. +
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H
Confidence 345554 445688999999999999999876 433333 4445555555655554445555555433221 11 0
Q ss_pred hcCchHHHHHHh--------hcC--CHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhh-ccCCcchhhHHHHHH
Q 003146 388 EDGAIEPLVRMF--------RVG--KLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLF-SVTSVLMTLREPASA 456 (844)
Q Consensus 388 ~~g~i~~Lv~lL--------~~~--~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~l~~~a~~ 456 (844)
+.+..++..+ .++ ..+.....+.++..+|...+++. ...++.+..+|. .++ ...+..+..
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~---~~~~alale 144 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCD---EVAQALALE 144 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 2333333331 111 12333444567777776544321 224567777774 332 345677888
Q ss_pred HHHHHhcC
Q 003146 457 ILARIAQS 464 (844)
Q Consensus 457 ~L~~l~~~ 464 (844)
.|..++..
T Consensus 145 ~l~~Lc~~ 152 (234)
T PF12530_consen 145 ALAPLCEA 152 (234)
T ss_pred HHHHHHHH
Confidence 88888744
No 247
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.19 E-value=8.7 Score=33.61 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=37.0
Q ss_pred HHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHH
Q 003146 283 QREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASH 326 (844)
Q Consensus 283 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~ 326 (844)
-...+..+..|+..|+....+.. .|+++.|+.||.++|.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~-l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVE-LGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHH-cCCHHHHHHHHCCCCcceeh
Confidence 34677888899999999999998 99999999999998877643
No 248
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.30 E-value=2.2e+02 Score=29.68 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=42.2
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhhhcCC
Q 003146 768 GTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGD 820 (844)
Q Consensus 768 ~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~~~~ 820 (844)
.+--+..+|+.+.+.+|.+.+.+|.-++...+.+...+.+-..||..+++.+-
T Consensus 189 ~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 189 ILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCcc
Confidence 45668888888889999999999999998888876666555578888887643
No 249
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.94 E-value=49 Score=30.90 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=50.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVGILS 584 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L~ 584 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++....++.++.-+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 5667777788899999999999999999887766554443 4477888888876566677655555443
No 250
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.92 E-value=49 Score=30.45 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=51.8
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhch-hhHHHHHHHhcCC--CCHHHHHHHHHHHhc
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGD-KYLNILVDITLSS--TSENEKAAAVGILSN 585 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~-~~l~~Lv~lL~~~--~~~~~~~~a~~~L~~ 585 (844)
++..|-.-+.++++.++..|+.+|..+..+.+..+...+.. ..+..|++++... .+..++.-+...+.+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILA 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 46677777889999999999999999999888766665554 5777799988763 456666555554443
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=59.41 E-value=52 Score=30.80 Aligned_cols=69 Identities=10% Similarity=0.196 Sum_probs=51.8
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVGILSN 585 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~ 585 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++....+..++.-+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 4666777788899999999999999999988877665544 44778888888865666666555554443
No 252
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.15 E-value=4.4e+02 Score=32.76 Aligned_cols=468 Identities=16% Similarity=0.124 Sum_probs=226.8
Q ss_pred cHHHHHH-hhcCCChHHHHHHHHHHHHhc-cCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc--Cc-hhh
Q 003146 309 CIVMLVS-MLSGNDPVASHDAGKLLNALS-SNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL--TD-QSR 383 (844)
Q Consensus 309 ~i~~Lv~-lL~s~d~~~~~~A~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~--~~-~~~ 383 (844)
++..|-. +|++++.+.+-.....+..+- .+++|-...-+.--++.++.-+..-...++.....+|..-.. +. ..+
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeq 546 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQ 546 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHH
Confidence 4555554 456777777776666666653 566776555566778888877766665666555555433211 10 111
Q ss_pred hhhhhcCchHHHHHHhhcCCH-HHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHhhccCC--cchhhHHHHHHHHH
Q 003146 384 ASLGEDGAIEPLVRMFRVGKL-EAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLLFSVTS--VLMTLREPASAILA 459 (844)
Q Consensus 384 ~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL~~~~~--~~~~l~~~a~~~L~ 459 (844)
. +-.|--+|+.+-. ..+..-+.....|-+.+ ..+..+.+-|++..|-..++.+.- .+..----.-..=.
T Consensus 547 E-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydr 619 (2799)
T KOG1788|consen 547 E-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDR 619 (2799)
T ss_pred H-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhc
Confidence 1 1134444544322 22333333334444443 455666678888888877765320 00000000000001
Q ss_pred HHhcCh--hhhcccchHHHHHHhhccCChH--HHH------HHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC
Q 003146 460 RIAQSE--SILVNKDVAQQMLSLLNLCSPT--IQY------HLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN 529 (844)
Q Consensus 460 ~l~~~~--~~l~~~~~i~~Lv~lL~~~~~~--~~~------~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 529 (844)
|..+.. ..+...+.+-.--.++++++-+ +.+ ....+|..+-.++ .++...+.++.|+..++.++- +
T Consensus 620 npss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnn--teNqklFreanGvklilpfli--n 695 (2799)
T KOG1788|consen 620 NPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNN--TENQKLFREANGVKLILPFLI--N 695 (2799)
T ss_pred CCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhcc--chhhHHHHhhcCceEEEEeee--c
Confidence 111100 0111111111111223332211 111 1234566666665 788999999999999888883 4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcC---CC---C-----HHHHHHHHHHHhcCCCCCHHHHHHHH
Q 003146 530 ANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLS---ST---S-----ENEKAAAVGILSNLPVSNKKATELLK 598 (844)
Q Consensus 530 ~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~---~~---~-----~~~~~~a~~~L~~L~~~~~~~~~~l~ 598 (844)
++-|..-.+++..|....+..+ ....+-.+|+.|++ .+ . .......+|+++.+.--+-..+..+.
T Consensus 696 dehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFg 771 (2799)
T KOG1788|consen 696 DEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFG 771 (2799)
T ss_pred hHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehh
Confidence 4556666666666544333211 12245567777764 11 1 12235667788888655667788899
Q ss_pred hCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003146 599 KTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQL 678 (844)
Q Consensus 599 ~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~l 678 (844)
++++...|...|..-..... +-...| .++ .. ..+..|.+++. ..++.+|..+.. +
T Consensus 772 eatGFslLlttLhtfqgfte----------------lhdesD-lcv--yi--klfkilFrlfT---lavcenasNrmk-l 826 (2799)
T KOG1788|consen 772 EATGFSLLLTTLHTFQGFTE----------------LHDESD-LCV--YI--KLFKILFRLFT---LAVCENASNRMK-L 826 (2799)
T ss_pred ccccHHHHHHHHHHhccchh----------------cCCchh-hhh--HH--HHHHHHHHHHH---HHHhhcchhhhh-e
Confidence 99999999888854221000 000000 000 00 11122222220 011111110000 0
Q ss_pred hhcCccccc------cccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHh----hcCCChhhHHHHHHHHH
Q 003146 679 SQNSLSLRK------SKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV----LEGKEREADETVLGALA 748 (844)
Q Consensus 679 s~~~~~~~~------~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~l----L~~~~~~v~~~A~~AL~ 748 (844)
. ..++. .+-.+.+|+.- +...|..|..+ |..++-.--.+|+..+-
T Consensus 827 h---tvITsqtftsLLresgllcvnl----------------------er~viqlllElalevlvppfLtSEsaAcaeVf 881 (2799)
T KOG1788|consen 827 H---TVITSQTFTSLLRESGLLCVNL----------------------ERHVIQLLLELALEVLVPPFLTSESAACAEVF 881 (2799)
T ss_pred e---eeeeHHHHHHHHHHhccceecc----------------------hHHHHHHHHHHHHHhhCCchhhhhHHHHHHHh
Confidence 0 00000 00111112210 00112222211 22222211222222222
Q ss_pred hhhccc---c-c----hhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccc--h---hHHhh
Q 003146 749 SLLQDE---T-W----ESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQ--V---VLIDL 815 (844)
Q Consensus 749 ~L~~~~---~-~----~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~--~---~Lv~l 815 (844)
.+-++- + + -.--+.|..+|+++.+++.+-...|.+|-.-+..++...|.....+..-.+++ . .+|-.
T Consensus 882 elednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiyp 961 (2799)
T KOG1788|consen 882 ELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYP 961 (2799)
T ss_pred hcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhh
Confidence 222110 0 1 11124578899999999988777889999999999999988766555544443 2 34445
Q ss_pred hhcCCCCchHHHHHHHHHHhhhhcCC
Q 003146 816 AQNGDSRLKPAVAKLLAQLELLQAQS 841 (844)
Q Consensus 816 l~~~~~~~~~~aa~~L~~l~~~~~~s 841 (844)
+-+|+.-.-..|.++..-|+.++--|
T Consensus 962 flsgsspfLshalkIvemLgayrlsp 987 (2799)
T KOG1788|consen 962 FLSGSSPFLSHALKIVEMLGAYRLSP 987 (2799)
T ss_pred hhcCCchHhhccHHHHHHHhhccCCc
Confidence 56778778888888888887776443
No 253
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=58.48 E-value=1e+02 Score=31.81 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=48.8
Q ss_pred hCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh-hhH---HHHHHhchhhHHHHHHHhcCCC-CHHHHHHHHHHHhcCCC
Q 003146 514 ENGAIHLLLPFLMETNANIRAAALNLVCTLSKD-VYE---ELAEQLGDKYLNILVDITLSST-SENEKAAAVGILSNLPV 588 (844)
Q Consensus 514 ~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~-~~~---~i~~~l~~~~l~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~ 588 (844)
+..+.++++++++.++.-+ ..+..+ .++ .+...++.+.+..|.+++.+++ +.-+|.+|..+|..+..
T Consensus 71 e~~A~~~li~l~~~~~~~~--------~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFL--------EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred hhhhHHHHHHHHcCCcchH--------HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 3447888888887655411 111111 111 2222344556667777777544 45678899999998877
Q ss_pred CCHHHHHHHHhCCChHHHHHHhhc
Q 003146 589 SNKKATELLKKTNLLPSLISAATS 612 (844)
Q Consensus 589 ~~~~~~~~l~~~~~v~~L~~ll~~ 612 (844)
..+.-|..+. ..+..++..
T Consensus 143 ~~~~~Re~vi-----~~f~~ll~~ 161 (249)
T PF06685_consen 143 EGPISREEVI-----QYFRELLNY 161 (249)
T ss_pred cCCCCHHHHH-----HHHHHHHHH
Confidence 6665454443 444555543
No 254
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=57.85 E-value=2.1e+02 Score=30.93 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhHh-cChhhHHHHhc-CC-cHHHHHHHhcC-----CH---------HHHHHHHHH
Q 003146 227 IAVLLNRLGSSKPYNRLIMIQILRNLAS-ENADYKEKMAN-VG-SLSALVKSLTR-----DV---------EEQREAVGL 289 (844)
Q Consensus 227 ~p~l~~lL~s~~~~~~~~a~~~L~~L~~-~~~~~~~~i~~-~g-~i~~Lv~~L~~-----~~---------~~~~~A~~~ 289 (844)
.+.+-.-|.++.......+++.|..++. +.......+.. -+ ..+.+.+++.. .. ++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777777888887888889999999986 43333333322 22 34455555532 11 567777777
Q ss_pred HHHccC--CChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHH-hccCC----ccHHHHHHcCChHHHHHHhccCC
Q 003146 290 LLDLSD--LPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNA-LSSNT----QNALHMAEAGYFKPLVQYLKEGS 362 (844)
Q Consensus 290 L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~n-Ls~~~----~~~~~i~~~g~i~~Lv~~L~~~~ 362 (844)
+..+.. ++..++.+....+.+..+..-+..+++++......+|.. +..++ ..|..+.....+..|+.+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666544 456788888767889999999988888888888888874 33332 23556666677888888776655
Q ss_pred H----HHHHHHHHHHHHhhcCc
Q 003146 363 D----MSKILMATALSRMELTD 380 (844)
Q Consensus 363 ~----~~~~~aa~~L~~Ls~~~ 380 (844)
+ .+...+-..|..++.+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 5 45555555566655443
No 255
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=55.87 E-value=58 Score=30.39 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=57.4
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNANIRAAALNLVCTLSK 545 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls~ 545 (844)
+++..|..=|..++|.++..|+.+|-.+..+.+ ......+.+.+++..|+.++.. .++.|+..++.++..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 455666666778999999999998888877754 5667778888999999999874 556899999988876543
No 256
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.81 E-value=4.8e+02 Score=32.19 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=77.3
Q ss_pred hCcHHHHHHhhc------C--CChHHHHHHHHHHHHhcc---CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 307 QGCIVMLVSMLS------G--NDPVASHDAGKLLNALSS---NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSR 375 (844)
Q Consensus 307 ~g~i~~Lv~lL~------s--~d~~~~~~A~~~L~nLs~---~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 375 (844)
.|.++.++..|. . .++...+-|..++.+|+. .+..-..+++.=.++.+...+++...-.|..|+++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 567888888886 2 345566777788888773 22222334444456667777788877788899999999
Q ss_pred hhcCc-hhhhhhhhcCchHHHHHHhh-cCCHHHHHHHHHHHHHhhcCcccH
Q 003146 376 MELTD-QSRASLGEDGAIEPLVRMFR-VGKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 376 Ls~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
++.-+ .....+. .++..-...|. +.+..++-.|+-||..+-++.+..
T Consensus 489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 88533 2222222 35556666666 666688999999999988776544
No 257
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=55.50 E-value=13 Score=24.00 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhc
Q 003146 738 EADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLES 778 (844)
Q Consensus 738 ~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~ 778 (844)
.||..|+.+|.++..+. +++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~~~~~-------------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE-------------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh-------------HHHHHHHHhcC
Confidence 47899999999986654 57777777643
No 258
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=54.38 E-value=33 Score=33.75 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=53.5
Q ss_pred chHHHHhhcCCChhhHHHHHHHHHhhhcccc--chhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 003146 725 VSPLIQVLEGKEREADETVLGALASLLQDET--WESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 725 i~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~--~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~ 797 (844)
++.++++..+.+..++..|+..+..+...+- |. ..+|.++.+..++++.++.+|...+..++..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---------QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 4677788889999999999999998887653 21 1588999999999999999999999988754
No 259
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=54.25 E-value=49 Score=29.89 Aligned_cols=70 Identities=16% Similarity=0.353 Sum_probs=45.2
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHH-hCCcHHHHHHHhccCC--------HHHHHHHHHHHHHh
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK-ENGAIHLLLPFLMETN--------ANIRAAALNLVCTL 543 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~-~~g~i~~Lv~ll~~~~--------~~v~~~A~~~L~~l 543 (844)
....|..=|+..+|.++..++++|-.+|..++ +..+..+. ....|..+.++-...+ ..||..|-.++..+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 34455555677889999999999999999875 44444443 3345555555544222 25677777766554
No 260
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.06 E-value=63 Score=30.03 Aligned_cols=72 Identities=7% Similarity=0.129 Sum_probs=56.4
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc------CCHHHHHHHHHHHHHhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME------TNANIRAAALNLVCTLS 544 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~A~~~L~~ls 544 (844)
.++..+..-+++++|.++..|+.+|-.+..+.+ ......+...+++..|+.++.. .++.|+...+.++..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345666666788899999999998888877654 6777888888899999999963 45689999888886544
No 261
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=53.05 E-value=79 Score=30.15 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=74.0
Q ss_pred hCcHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhh
Q 003146 307 QGCIVMLVSMLSGN-DPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRAS 385 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~-d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (844)
...++.|.++|+.+ ++.++..++.+|+.|.--+..+.+....+.- .-. -...+..... ..+.+..... .-..
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~--~~~~~~~~~~---~~l~~~~~~~-~~ee 81 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS--SENSNDESTD---ISLPMMGISP-SSEE 81 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc--cccccccchh---hHHhhccCCC-chHH
Confidence 34566778888754 5888999999999886544444333221110 000 0000001110 1111111110 1111
Q ss_pred hhhcCchHHHHHHhhcCCHHH-HHHHHHHHHHhhcCcc-cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 386 LGEDGAIEPLVRMFRVGKLEA-KLSALNALQNLSLLAE-NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~-~~~A~~aL~nLs~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
.....++..|+++|++.+... ...++.|+.++....+ .+.... .-++|.++..+++.++ .+++....-|+.|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~---~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPD---SLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCH---HHHHHHHHHHHHH
Confidence 222357789999999877644 4467777777764322 222222 3468888888886653 3556555444443
No 262
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.88 E-value=2.9e+02 Score=28.79 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=50.7
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHh
Q 003146 390 GAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIA 462 (844)
Q Consensus 390 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~ 462 (844)
..+..|+.+|.++.+-.|...+..|+.+-.+.+.+.. ..++.+.+++++++++ ...+|+.+|-++.
T Consensus 188 ~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~------~~~eAL~VLd~~v 253 (262)
T PF14225_consen 188 QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD------LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc------cHHHHHHHHHHHH
Confidence 4567789999999999999999999999876554333 5566889999999755 3467888776654
No 263
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.71 E-value=1.7e+02 Score=28.55 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=63.2
Q ss_pred HHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCC-------------------cHHHHHHHhccC-CHHHHHHH
Q 003146 477 MLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENG-------------------AIHLLLPFLMET-NANIRAAA 536 (844)
Q Consensus 477 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g-------------------~i~~Lv~ll~~~-~~~v~~~A 536 (844)
+--++.++++++|..|+.+|..|-.+. ..+-....+.+ .-..|+..+..+ +..+....
T Consensus 45 lt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 45 LTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred hHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 334567789999999999999997764 33333333211 123455555554 45677788
Q ss_pred HHHHHHhhhhhhH-HHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 003146 537 LNLVCTLSKDVYE-ELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNL 586 (844)
Q Consensus 537 ~~~L~~ls~~~~~-~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L 586 (844)
.+++..+....+. .+...+-...+..+..++. +.|.+++..+..+++.+
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~-~~d~~v~v~~l~~~~~l 172 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLR-HRDPNVRVAALSCLGAL 172 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHH
Confidence 8888888777662 2222222223333444444 46777777666665554
No 264
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.46 E-value=3.6e+02 Score=29.74 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=81.7
Q ss_pred HHhCCcHHHHHHHhccCC-HHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhc--CCCCHHHHHHHHHHHhcCCC
Q 003146 512 MKENGAIHLLLPFLMETN-ANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITL--SSTSENEKAAAVGILSNLPV 588 (844)
Q Consensus 512 i~~~g~i~~Lv~ll~~~~-~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~--~~~~~~~~~~a~~~L~~L~~ 588 (844)
+-+..-.+-+-.-+...+ ..-|.+|..+|+.|++..+..+...+.. .+..++.-.. .+.+...+.+|...++.|+.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 334444455555454333 3567899999999987665544333221 2333332111 13345666777777776654
Q ss_pred CCHH------------HHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHH
Q 003146 589 SNKK------------ATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLL 656 (844)
Q Consensus 589 ~~~~------------~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~L 656 (844)
.... .-..+....++|.|. ++.+ ..+.++..|+..+..|-..-+++ .-.+++|.+
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-----~~~~---~~piLka~aik~~~~Fr~~l~~~-----~l~~~~~~l 351 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-----PDVN---SHPILKADAIKFLYTFRNQLPKE-----QLLQIFPLL 351 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH------SS----S-HHHHHHHHHHHHHHGGGS-HH-----HHHHHHHHH
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhc-----ccCC---CCcchHHHHHHHHHHHHhhCCHH-----HHHHHHHHH
Confidence 3321 012223333334332 1111 12356778888888887654332 123588999
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 003146 657 VKLLSSESVVAKSSASISL 675 (844)
Q Consensus 657 v~lL~~~~~~vk~~Aa~aL 675 (844)
++.|.+++.-|...||.|+
T Consensus 352 ~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 352 VNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHTTSS-HHHHHHHHHHH
T ss_pred HHHhCCCCcchhhhhhhhC
Confidence 9999999999999999875
No 265
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.73 E-value=3.5e+02 Score=29.33 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=95.7
Q ss_pred ChHHHHHHhcc-CCHHHHHHHHHHHHHhh-cC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHH
Q 003146 350 YFKPLVQYLKE-GSDMSKILMATALSRME-LT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQR 426 (844)
Q Consensus 350 ~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls-~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~ 426 (844)
.+..+..++.. +++.....+..+|+.-. .. .+ .....+..+.+-+.+..+.+|+.-+.++........|...
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~-----~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE-----LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC-----CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 44555666654 45555555555554321 11 11 1134556677777777777888777777766652222211
Q ss_pred H-HHcCChHHHHHHhhccCCcch-----hhHHHHHHHHHHHhcCh-hhhccc---------chHHH-HH--Hhhcc-CCh
Q 003146 427 L-VISGIVSPLLQLLFSVTSVLM-----TLREPASAILARIAQSE-SILVNK---------DVAQQ-ML--SLLNL-CSP 486 (844)
Q Consensus 427 i-~~~g~v~~Lv~lL~~~~~~~~-----~l~~~a~~~L~~l~~~~-~~l~~~---------~~i~~-Lv--~lL~~-~~~ 486 (844)
. .-...+|.|++.+......+. .....+..++. +.... ...... +.-+. ++ .+... .++
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~ 176 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence 1 123467888888754321100 01122222222 11110 000000 00000 00 12233 456
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC--CHHHHHHHHHHHHHhhhhhhHH
Q 003146 487 TIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET--NANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 487 ~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
+.....+++|..+..+... ...... ....-..++.++-+. ...+|+.|..++..+....+..
T Consensus 177 ~d~~w~~~al~~~~~~~~~-~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPS-ELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred hHHHHHHHHHHHHHhcchh-hhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 6666777777766554321 111111 223567788888888 7899999999998876655543
No 266
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.18 E-value=5.6e+02 Score=31.30 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=39.1
Q ss_pred cCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc
Q 003146 318 SGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD 380 (844)
Q Consensus 318 ~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~ 380 (844)
..+|.-..-.+...|..|..+.+....+++.|++..|+.+=+.. +.-.-...+|..++...
T Consensus 363 q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q 423 (1516)
T KOG1832|consen 363 QLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQ 423 (1516)
T ss_pred ccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch--hhhhhHHHHHHHHhhhh
Confidence 34565566677788888888888888899999988877654332 22222233455555443
No 267
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.51 E-value=86 Score=28.84 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=48.1
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHH-HHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSEN-EKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~-~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++....+.. ++.-+...+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4566677788899999999999999999888766655544 447788888888655433 554444433
No 268
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.13 E-value=90 Score=28.97 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=49.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHH---HHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSEN---EKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~---~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|.+++....... ++.-+...+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELL 113 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Confidence 4566777788899999999999999999988877765554 447788888887655544 554444433
No 269
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.80 E-value=99 Score=28.74 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=47.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcC-----CCCHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLS-----STSENEKAAAVG 581 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~-----~~~~~~~~~a~~ 581 (844)
++..+..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++.. ..+..++.-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~ 109 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIE 109 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 4666777788999999999999999999988877765554 4477889998863 234555544333
No 270
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.44 E-value=74 Score=33.52 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHccCC-Ch-hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHH
Q 003146 280 VEEQREAVGLLLDLSDL-PA-VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQY 357 (844)
Q Consensus 280 ~~~~~~A~~~L~~Ls~~-~~-~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~ 357 (844)
.+....++..++.|+.. ++ ....+ .-.|..+++=+++....+...|+.++..+...-.+...-...+.+..|..-
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L---~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPML---HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555543 21 11122 335667777777777788888888888776533332222112222222222
Q ss_pred hccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 003146 358 LKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNL 417 (844)
Q Consensus 358 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 417 (844)
-..++..++..|-.+|..+...-.. .-+++.|+..+.+.+++++..++.+..+.
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2223445677777788777654222 23557777788888888888777655443
No 271
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=44.61 E-value=7e+02 Score=30.87 Aligned_cols=105 Identities=14% Similarity=0.275 Sum_probs=69.3
Q ss_pred CCHHHHHHHhccC-CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHH
Q 003146 651 GVIRLLVKLLSSE-SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLI 729 (844)
Q Consensus 651 g~i~~Lv~lL~~~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv 729 (844)
..+|.|++-|+.. ...+|-+...+++.++.+ ...+...-||-+.
T Consensus 968 r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-----------------------------------YTam~d~YiP~I~ 1012 (1529)
T KOG0413|consen 968 RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS-----------------------------------YTAMTDRYIPMIA 1012 (1529)
T ss_pred HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH-----------------------------------HHHHHHHhhHHHH
Confidence 3678888888654 344555555555555432 2334456789999
Q ss_pred HhhcCCChhhHHHHHHHHHhhhcccc--chhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 730 QVLEGKEREADETVLGALASLLQDET--WESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 730 ~lL~~~~~~v~~~A~~AL~~L~~~~~--~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
..|.++++-||..+..-|.+|.+.+. |. |.-. ++.+..+ -+.++.++.-|-..+..++...
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~-G~Lf------~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFGIVKWN-GELF------IRFMLAL-LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhhhhhcc-hhhH------HHHHHHH-cccCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998764 32 1111 2222232 2567788888887777776543
No 272
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=44.00 E-value=2.4e+02 Score=33.22 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=92.0
Q ss_pred CCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHH
Q 003146 225 EIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRR 302 (844)
Q Consensus 225 ~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~ 302 (844)
+.+|.+++++++.+..+|..-+.-+-..+..- -..+.+....+.+..-+.+ +.-.|.++++.+..|+.. ... .
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~ 404 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N 404 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence 47899999999999999877665554444211 1334444556666655555 555777777777666432 111 1
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcC-ChHHHHHHhccCCHHHHHHHHHHHHHhhcCch
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAG-YFKPLVQYLKEGSDMSKILMATALSRMELTDQ 381 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g-~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 381 (844)
+. ...+..|-.+=.+++..++-+..-+|...+.+.... ...+ .+-++...++++-...|..+...+.... ..
T Consensus 405 Ln--~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~--~~ 477 (690)
T KOG1243|consen 405 LN--GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQ--EY 477 (690)
T ss_pred hc--HHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcc--cc
Confidence 11 111222322223455666766666666665442211 1222 2233444566655555544443333322 21
Q ss_pred hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHH
Q 003146 382 SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQ 415 (844)
Q Consensus 382 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 415 (844)
.-..=.....+|.++-+..+.+..++..|-.++.
T Consensus 478 ~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 478 FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred cchhhhhhhccccccccccCcccchhhHHHHHHH
Confidence 1111112345566666666666666666655543
No 273
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=43.90 E-value=4e+02 Score=27.78 Aligned_cols=218 Identities=15% Similarity=0.128 Sum_probs=114.9
Q ss_pred HHHHhhccCCcchhhHHHHHHHHHHHhcC-hhhhcccchHHHHHHhhcc--CChHHHHHHHHHHHHhhcCCCh-hHHHHH
Q 003146 436 LLQLLFSVTSVLMTLREPASAILARIAQS-ESILVNKDVAQQMLSLLNL--CSPTIQYHLLHALNSIAAHSSA-SNVRRK 511 (844)
Q Consensus 436 Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~-~~~l~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~-~~~~~~ 511 (844)
|-..|.+.+ ...|.+|...|+.+... +....+..-+..|++...+ .+......++.++..|.....- ......
T Consensus 4 Lg~~Ltsed---~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSED---PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCC---HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHH
Confidence 334455543 45778888888876654 2222334445666665533 4555555556666666543210 111111
Q ss_pred HHhCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCC
Q 003146 512 MKENGAIHLLLPFLM--ETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVS 589 (844)
Q Consensus 512 i~~~g~i~~Lv~ll~--~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~ 589 (844)
.+..+.+-.. .-....|..+..++..+..+....+ ..++...+..+++.+....||.-...+-.++..+...
T Consensus 81 -----i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 81 -----ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred -----HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1222222111 2223678888888888876655554 3345557888888888878876654444433333211
Q ss_pred CHHHHHHHHhCCChHHHHHHhh--------cCCCCC-CCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHh
Q 003146 590 NKKATELLKKTNLLPSLISAAT--------SSTITK-THSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLL 660 (844)
Q Consensus 590 ~~~~~~~l~~~~~v~~L~~ll~--------~~~~~~-~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL 660 (844)
-+ . ....+.+.+.+. .+...+ .... +....+|.+.-. ..+. ...-.+|.|.+=|
T Consensus 155 ~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~----edLk~~L~~cl~-s~~~-----fa~~~~p~LleKL 217 (262)
T PF14500_consen 155 FD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITR----EDLKRALRNCLS-STPL-----FAPFAFPLLLEKL 217 (262)
T ss_pred cc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCH----HHHHHHHHHHhc-CcHh-----hHHHHHHHHHHHH
Confidence 11 1 233334444332 111111 1122 233333333222 1232 1235789999999
Q ss_pred ccCCHHHHHHHHHHHHHHh
Q 003146 661 SSESVVAKSSASISLAQLS 679 (844)
Q Consensus 661 ~~~~~~vk~~Aa~aL~~ls 679 (844)
.++++.+|..+...|....
T Consensus 218 ~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 218 DSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred cCCCcHHHHHHHHHHHHHH
Confidence 9999999999888887644
No 274
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=43.55 E-value=1e+02 Score=36.33 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=79.6
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHH-hccCCHHHHHHHHHHHHHhhcCchhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQY-LKEGSDMSKILMATALSRMELTDQSRAS 385 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (844)
..++|.|..-+++.+..+|+.++..+-..+..-+ ...+..-.+|.|-.+ +.+.+..++.+++.+++.+...-+ +..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHH
Confidence 5677888888899999999999999888875333 334444556666544 344566788899999998882211 111
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHh
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLL 440 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL 440 (844)
+ ..-+.++.+-.+..++......+.+..++.....+...++...++|.++.+.
T Consensus 465 v--~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 465 V--LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred h--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 1 1234445555556677777776666666665433323333344555555444
No 275
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=43.50 E-value=4.3e+02 Score=28.11 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=126.4
Q ss_pred HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-hhhhh----hh-hcCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 003146 344 HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD-QSRAS----LG-EDGAIEPLVRMFRVGKLEAKLSALNALQNL 417 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~----i~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 417 (844)
.+..+|.+..++..|...+-+.+..++.+..++-..+ ..+.. +. ....+..|+.--.. .++.--.+-.-|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 4667899999999999998888887777777664322 22211 11 13333444433111 233333333334444
Q ss_pred hcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-----hhhccc-c-h-HHHHHHhhccCChHHH
Q 003146 418 SLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-----SILVNK-D-V-AQQMLSLLNLCSPTIQ 489 (844)
Q Consensus 418 s~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-----~~l~~~-~-~-i~~Lv~lL~~~~~~~~ 489 (844)
..++.-...+..+.-.......++.++ -.+...|..+...+...- +.+..+ + . .+..-.++++++.-++
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~---FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPN---FDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccc---hHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 444444455556666666666665554 235556666666554432 122211 1 1 2335567888888899
Q ss_pred HHHHHHHHHhhcCCCh-hHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh--HHHHHHh
Q 003146 490 YHLLHALNSIAAHSSA-SNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY--EELAEQL 555 (844)
Q Consensus 490 ~~a~~~L~~L~~~~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~--~~i~~~l 555 (844)
..+...|..+-...+. ....+.+.+...+..+..+|++++..+|-.|-...+....... +.+.+.+
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL 298 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDIL 298 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHH
Confidence 9999999988655432 3444556666788999999999999999999998887765543 4555554
No 276
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=42.69 E-value=1.5e+02 Score=27.46 Aligned_cols=73 Identities=14% Similarity=0.286 Sum_probs=55.4
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-H---HHHHHHHHHHHhhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-N---IRAAALNLVCTLSK 545 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~---v~~~A~~~L~~ls~ 545 (844)
.++..|..=|..++|.++..|+.+|-.+..+.+ ...+..+....++..|..++.+... . |+..+..++..-+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg-~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCG-PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 345666666788999999999999888877753 5677777777889999998876443 3 88888888865543
No 277
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=42.01 E-value=64 Score=27.55 Aligned_cols=83 Identities=10% Similarity=0.072 Sum_probs=58.2
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHc
Q 003146 351 FKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVIS 430 (844)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~ 430 (844)
++..+..|.++...+|..+...|..|..... ...+...+.+..+...|+++++-+--+|+.+|..|+.... .
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------D 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------H
Confidence 4455667777777888888888988877655 2222235677788888999999899999999998885422 1
Q ss_pred CChHHHHHHhh
Q 003146 431 GIVSPLLQLLF 441 (844)
Q Consensus 431 g~v~~Lv~lL~ 441 (844)
.+++.|++...
T Consensus 77 ~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 EVLPILLDEYA 87 (92)
T ss_pred HHHHHHHHHHh
Confidence 24555655543
No 278
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.86 E-value=6.5e+02 Score=29.95 Aligned_cols=155 Identities=15% Similarity=0.036 Sum_probs=83.2
Q ss_pred ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc--Cc----hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHH
Q 003146 340 QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL--TD----QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNA 413 (844)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~--~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a 413 (844)
++...|.-.=+=|-|..-|+..+..+|.+|+..+.++=- ++ +....+.+ .-...|.++|+++-+.+|..|..-
T Consensus 165 qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~g 243 (1005)
T KOG1949|consen 165 QGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILG 243 (1005)
T ss_pred hhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHH
Confidence 334444433333445667777889999999999888632 22 22333333 334678999999999999888765
Q ss_pred HHHhhcCcccHHHHHHcCChHHHHHHhh----ccCCcchhhHHHHHHHHHHHhcChh-hhcccchHHHHHHhhccCChHH
Q 003146 414 LQNLSLLAENIQRLVISGIVSPLLQLLF----SVTSVLMTLREPASAILARIAQSES-ILVNKDVAQQMLSLLNLCSPTI 488 (844)
Q Consensus 414 L~nLs~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~l~~~a~~~L~~l~~~~~-~l~~~~~i~~Lv~lL~~~~~~~ 488 (844)
+....+. -..++=...+..|+..+. .++. ..++-.....|-.+...+. .-.-+-+++.+-..|.+.+..+
T Consensus 244 v~k~~s~---fWe~iP~~i~~~ll~kI~d~~a~dt~--s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~V 318 (1005)
T KOG1949|consen 244 VCKITSK---FWEMIPPTILIDLLKKITDELAFDTS--SDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKV 318 (1005)
T ss_pred HHHHHHH---HHHHcCHHHHHHHHHHHHHHhhhccc--hheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhH
Confidence 5544321 011111112222222222 1111 1233333333444443331 0001123445555667788889
Q ss_pred HHHHHHHHHHhh
Q 003146 489 QYHLLHALNSIA 500 (844)
Q Consensus 489 ~~~a~~~L~~L~ 500 (844)
|-+++..|..+-
T Consensus 319 RvA~vd~ll~ik 330 (1005)
T KOG1949|consen 319 RVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHH
Confidence 999998888773
No 279
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=41.49 E-value=2.8e+02 Score=25.40 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=55.8
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH--HHHHHHHHHHHHhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA--NIRAAALNLVCTLS 544 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~v~~~A~~~L~~ls 544 (844)
.++..|..=|.+++|.++..|+.+|-.+..+.+ ......+...+++..|+.++..... .|+.++..++..-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 345566666778999999999999988877754 6677778888899999999887553 48888888876544
No 280
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=40.14 E-value=2.5e+02 Score=26.73 Aligned_cols=141 Identities=11% Similarity=0.127 Sum_probs=68.4
Q ss_pred ChHHHHHHhccC-CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHH
Q 003146 350 YFKPLVQYLKEG-SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLV 428 (844)
Q Consensus 350 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~ 428 (844)
.++.|..+|+.+ +...|.++.++|+.|..-|.++......+. +.-.. .+.+..... ..+.+....+ ......
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~~--~~~~~~~~~---~~l~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKSS--ENSNDESTD---ISLPMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Ccccc--ccccccchh---hHHhhccCCC-chHHHH
Confidence 456677888776 467899999999999876655443222110 00000 000001111 1111111111 122223
Q ss_pred HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHh
Q 003146 429 ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSI 499 (844)
Q Consensus 429 ~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 499 (844)
-..++..|+..|++.+-. .-...+..++.++-... ..-.-...++.++..++..++..++....-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs--~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLS--SHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334566677777665421 12234444444443221 1111124577888888876667777666555444
No 281
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.10 E-value=2.4e+02 Score=24.46 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=44.9
Q ss_pred hhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHH
Q 003146 306 IQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSK 366 (844)
Q Consensus 306 ~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~ 366 (844)
..+.+..|+...+.+.+...+.+...|..|..++.....+.+-|++.-|-++=..-++..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~ 88 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQ 88 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHH
Confidence 3556667777777777778889999999999999888888888988875554433344433
No 282
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=36.70 E-value=51 Score=35.04 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=47.6
Q ss_pred cCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc------------chhhhHHHHhcCChHHHHHHhh
Q 003146 722 AGAVSPLIQVLEGKEREADETVLGALASLLQDET------------WESGSNYLAKLSGTQAIIKVLE 777 (844)
Q Consensus 722 ~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~------------~~~~~~~i~~~g~i~~lv~ll~ 777 (844)
..-+..+++.|.+.+...|..|+.+|+.++++.- ..+++..+.+.||+++++.+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4467899999999999999999999999998741 2457888999999999999984
No 283
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.78 E-value=5.3e+02 Score=26.61 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=62.6
Q ss_pred cCChHHHHHHhhccCC--------cchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCCh--------HHHHHHH
Q 003146 430 SGIVSPLLQLLFSVTS--------VLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSP--------TIQYHLL 493 (844)
Q Consensus 430 ~g~v~~Lv~lL~~~~~--------~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~--------~~~~~a~ 493 (844)
.-.+|.|+.+|..... +...+.-.+..+|+.+ ....+.+.++.+++.++. -+-+...
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~-------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~ 102 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF-------REERALPPLIRLFSQDDDFLEDLFGDFITEDLP 102 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH-------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHH
Confidence 4567888888865221 1112234455555544 455678999999875442 1344445
Q ss_pred HHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH--HHHHHHHHHHHHhhhhhh
Q 003146 494 HALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA--NIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 494 ~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~v~~~A~~~L~~ls~~~~ 548 (844)
++|..+|. |-++.|.+++.+++. -+|..|.++|..+....+
T Consensus 103 ~ilasv~~--------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 103 RILASVGD--------------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred HHHHHHhC--------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 55555554 357888888888775 589999999988876655
No 284
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.08 E-value=6.7e+02 Score=27.66 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhcCcc-cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh----cc--c--chHH
Q 003146 405 EAKLSALNALQNLSLLAE-NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL----VN--K--DVAQ 475 (844)
Q Consensus 405 ~~~~~A~~aL~nLs~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l----~~--~--~~i~ 475 (844)
.-|.+|+..|..|+...+ ....++ .+.+..++.-..........-++.|...+..++.....- .+ . +...
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 347788899999986422 212221 122333322222233333556788888888888764210 00 0 1122
Q ss_pred HHHH----hhc---cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHH
Q 003146 476 QMLS----LLN---LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLV 540 (844)
Q Consensus 476 ~Lv~----lL~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L 540 (844)
.+.. -|. +..|-.+..|++.+...-..-+. +.+ .+.++.++.+|.+++.-|...|+.++
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~----~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK----EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H----HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH----HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2221 122 34577888899888887665432 122 23789999999999999999888764
No 285
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=33.54 E-value=66 Score=28.28 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCC
Q 003146 408 LSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTS 445 (844)
Q Consensus 408 ~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~ 445 (844)
...+..|..|+..|+--..+++.|+++.|+.+|...+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 45678899999999988999999999999999977664
No 286
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=33.02 E-value=6.3e+02 Score=26.94 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=120.3
Q ss_pred HhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhH----HHH-hcCCcHHHHHHHhcCC-HHHHHHHHHHHHHcc
Q 003146 221 INEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYK----EKM-ANVGSLSALVKSLTRD-VEEQREAVGLLLDLS 294 (844)
Q Consensus 221 i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~----~~i-~~~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls 294 (844)
+...|+.+.+++-|...+-+.+.....+..++-...-..+ +.+ .....+..|++- ..+ .+.--.+-..+++..
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~-~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG-YENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh-hccchHHHHHHHHHHHHHH
Confidence 3345677778877755444444444444444432221111 111 112233333333 111 233333445677777
Q ss_pred CCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCccHHHHHHcCC---hHH-HHHHhccCCHHHHHHH
Q 003146 295 DLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQNALHMAEAGY---FKP-LVQYLKEGSDMSKILM 369 (844)
Q Consensus 295 ~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~---i~~-Lv~~L~~~~~~~~~~a 369 (844)
+++...+.|.. .............++=++...|..+...+-. +......+..... ++. --.+|++++--.+..+
T Consensus 154 rhe~LakiiL~-s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 154 RHEFLAKIILE-STNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred hhHHHHHHHHc-chhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 77777777776 6677777777777776777777777766643 3333333433333 233 4567788887788899
Q ss_pred HHHHHHhhcCchhhhh----hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc
Q 003146 370 ATALSRMELTDQSRAS----LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA 421 (844)
Q Consensus 370 a~~L~~Ls~~~~~~~~----i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 421 (844)
...|+.+-.+..|-.. |.....+..+..+|++++...+..|-...+-...+|
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 9999998776554333 344678899999999999999999988877776654
No 287
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.04 E-value=5.1e+02 Score=27.22 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=37.2
Q ss_pred cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHH--HHHHcCChHHHHHHh
Q 003146 389 DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQ--RLVISGIVSPLLQLL 440 (844)
Q Consensus 389 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~--~i~~~g~v~~Lv~lL 440 (844)
.-.+|+++.++++.++..|..++.+|..+..+..... .+.+.|..+.+-+.+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 3578999999999999999999999999987543222 234555544443333
No 288
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.19 E-value=3.6e+02 Score=24.04 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.1
Q ss_pred CHHHHHHHhc-cCCHHHHHHHHHHHHHHhhcC
Q 003146 652 VIRLLVKLLS-SESVVAKSSASISLAQLSQNS 682 (844)
Q Consensus 652 ~i~~Lv~lL~-~~~~~vk~~Aa~aL~~ls~~~ 682 (844)
++|.+.+.|. +..++.|..+-+.++.|+...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~ 38 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV 38 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc
Confidence 5688888898 668899999999999999643
No 289
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.37 E-value=2.7e+02 Score=24.56 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=48.2
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc------cCCHHHHHHHHHHHHH
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM------ETNANIRAAALNLVCT 542 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~------~~~~~v~~~A~~~L~~ 542 (844)
++..|..-|...+|.++..|+.+|-.+..+++ +.+...+.....+..++.+.. ..+..||.++..++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 44555555677899999999999999998875 566666777666666655311 1245788888877754
No 290
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.35 E-value=7e+02 Score=30.01 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=90.0
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhh
Q 003146 390 GAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESIL 468 (844)
Q Consensus 390 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l 468 (844)
..|.-|+.+|.+.+....+.+...+..+... .+. -.+..|++.....++ ..++.+|..+-. +
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s------~~~~~il~~~~~-P--- 66 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNS------QRALEILVGVQE-P--- 66 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCc------HHHHHHHHhcCC-c---
Confidence 4567789999998888877777666655432 221 124456665443332 456666665421 1
Q ss_pred cccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC-HHHHHHHHHHHHHhhhhh
Q 003146 469 VNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN-ANIRAAALNLVCTLSKDV 547 (844)
Q Consensus 469 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~A~~~L~~ls~~~ 547 (844)
........|-+.+ ..+..|-.++..|..+.+.. +...-.|.+...++.|+..|..++ ..+...|+.+|..|--+.
T Consensus 67 ~~K~~~~~l~~~~--~~~~~Rl~~L~Ll~~~v~~q--p~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 67 HDKHLFDKLNDYF--VKPSYRLQALTLLGHFVRSQ--PPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred cHHHHHHHHHHHH--cCchhHHHHHHHHHHHHhcC--CchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 0012233333344 35678888999999888764 344556778889999999887655 467778888887776666
Q ss_pred hHHHHHH
Q 003146 548 YEELAEQ 554 (844)
Q Consensus 548 ~~~i~~~ 554 (844)
+..+..+
T Consensus 143 p~~l~~~ 149 (668)
T PF04388_consen 143 PSSLGPH 149 (668)
T ss_pred cchhhHH
Confidence 5444333
No 291
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=30.34 E-value=5.2e+02 Score=29.88 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhc--c---------CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCC
Q 003146 448 MTLREPASAILARIAQSESILVNKDVAQQMLSLLN--L---------CSPTIQYHLLHALNSIAAHSSASNVRRKMKENG 516 (844)
Q Consensus 448 ~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~--~---------~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g 516 (844)
..+.+.|-..|..+... +.+...+..|..+.. . .++..|...+..| |+.. ...-....
T Consensus 251 ~~V~~~ae~~LKr~~~~---~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~-----~Aa~~~~~ 319 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVS---LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSV-----IAATSFPN 319 (501)
T ss_pred chHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhH-----HHHhCCcc
Confidence 45778888888887665 456678888988876 2 3456666555554 4331 01111233
Q ss_pred cHHHHHHHhccC--CHHHHHHHHHHH---HHhhhhhhHHHHHHhchhhHHHHHHHhc-------CCCCHHHHHHHHHHHh
Q 003146 517 AIHLLLPFLMET--NANIRAAALNLV---CTLSKDVYEELAEQLGDKYLNILVDITL-------SSTSENEKAAAVGILS 584 (844)
Q Consensus 517 ~i~~Lv~ll~~~--~~~v~~~A~~~L---~~ls~~~~~~i~~~l~~~~l~~Lv~lL~-------~~~~~~~~~~a~~~L~ 584 (844)
.+..+..-+.+. +.+++..+...+ .....+.+..+...+++..+..+...+. .+.+...+..+=.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 445555555555 567888888877 5555555555444444443334444442 1234566666666777
Q ss_pred cCCCCCHHHHHHHHhCCChHHHHHHhhcC
Q 003146 585 NLPVSNKKATELLKKTNLLPSLISAATSS 613 (844)
Q Consensus 585 ~L~~~~~~~~~~l~~~~~v~~L~~ll~~~ 613 (844)
.|....+..- ..+-+.+..|.+-|..+
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~ 426 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDE 426 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCc
Confidence 7766555431 12334555666666433
No 292
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=30.24 E-value=3.6e+02 Score=23.33 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=47.9
Q ss_pred ccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 470 NKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 470 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
....+..|+++.+..++-.++.++..|..+..+ +...+.+.+-|+...|-++-..-++..+...-.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~---~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS---PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC---cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 445678888888888877889999999999988 455667777888877666655555555444333
No 293
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.10 E-value=4.2e+02 Score=26.91 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=75.7
Q ss_pred HHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCH--------------H----HHHHHHHHHHHhhcCcccHHHHHHc
Q 003146 369 MATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKL--------------E----AKLSALNALQNLSLLAENIQRLVIS 430 (844)
Q Consensus 369 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------------~----~~~~A~~aL~nLs~~~~~~~~i~~~ 430 (844)
++..+..|...+++...+...+.++.+.+.|..-++ + .-..-...|+-||.++.....+-+.
T Consensus 84 Gc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~ 163 (226)
T PF14666_consen 84 GCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLLERW 163 (226)
T ss_pred HHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHHHHHHC
Confidence 334445556666655555567777777777754311 1 1122345778888888888888889
Q ss_pred CChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHH-HHHHhhccCChHHHHHHHHHHHHhh
Q 003146 431 GIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQ-QMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 431 g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~-~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
|+...+..+....+.+ +...-+|.+|--+ . +|-.. .|-..|.+++..+|..|..-|..+.
T Consensus 164 ~if~~l~~i~~~~~~~-----~l~klil~~LDY~----~-~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 164 NIFTMLYHIFSLSSRD-----DLLKLILSSLDYS----V-DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred CHHHHHHHHHccCchH-----HHHHHHHhhCCCC----C-ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9999888887765421 2333355555221 1 22223 3445788889999999998887664
No 294
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=28.54 E-value=1.7e+02 Score=27.45 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=18.2
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
+..|+++|.+.++.+...|+.+|.+..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 788888888888888888888876643
No 295
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.87 E-value=5e+02 Score=25.37 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=47.0
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 350 YFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
.++.+.+=|++.....+..|......|-.. ...+..=.=...|.+|-.-|.+.++++...++.+|..|...
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 455556666665555555666666655444 22222212256777888888999999999999999999644
No 296
>PLN03205 ATR interacting protein; Provisional
Probab=27.43 E-value=2.5e+02 Score=30.56 Aligned_cols=111 Identities=13% Similarity=0.214 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHH----HHHHHhcCC-cC----hHHHhhCCCHHHHHHH-hCCCCchHHHHHHHHHHHhHh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLE----LRELISAKT-VD----SEWINEAEIIAVLLNR-LGSSKPYNRLIMIQILRNLAS 254 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~----l~~L~~~~~-~~----~~~i~~~~~~p~l~~l-L~s~~~~~~~~a~~~L~~L~~ 254 (844)
++.++.+..-++...+.++++. +..++.+.. ++ -.|+.- .....+. .......+++.|+.++.-+..
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsL---fElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSL---FELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHH---HHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 5566666777777777777754 555665443 11 234331 1112222 124456788888888877765
Q ss_pred cChhh--HHHHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCCh
Q 003146 255 ENADY--KEKMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPA 298 (844)
Q Consensus 255 ~~~~~--~~~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~ 298 (844)
..... ++.+......+.+-++|.. +..+|++|+..|..|-..|.
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpk 449 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPK 449 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcH
Confidence 54433 5677777777888888887 56789999988887755543
No 297
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=27.19 E-value=82 Score=22.38 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=22.4
Q ss_pred hhhcccchHHHHHHhhccCChHHHHHHHHHH
Q 003146 466 SILVNKDVAQQMLSLLNLCSPTIQYHLLHAL 496 (844)
Q Consensus 466 ~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 496 (844)
.++........+..-+.++++.+|+.|+.+|
T Consensus 12 ~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 12 TLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3444455666777778889999999988653
No 298
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=1.2e+03 Score=28.18 Aligned_cols=286 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC--------CChHHHHHHHHHHHHhcc---CCccHHHHHHcCChHHH
Q 003146 286 AVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG--------NDPVASHDAGKLLNALSS---NTQNALHMAEAGYFKPL 354 (844)
Q Consensus 286 A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s--------~d~~~~~~A~~~L~nLs~---~~~~~~~i~~~g~i~~L 354 (844)
|+....-+++...-...+ .|.++.++..|.. +++...+-|...+.++.. .+.....+++.=.++.+
T Consensus 389 aal~fl~~~~sKrke~Tf---qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv 465 (970)
T COG5656 389 AALFFLIISKSKRKEETF---QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHV 465 (970)
T ss_pred HHHHHHHHHhcccchhhh---hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH--cCC
Q 003146 355 VQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI--SGI 432 (844)
Q Consensus 355 v~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~--~g~ 432 (844)
+..+++...-.+..++..+..+ ..+-+..-.-..+.+.....+++.+..++-.|+-||.-+-.+.+....+-+ .+.
T Consensus 466 ~P~f~s~ygfL~Srace~is~~--eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~t 543 (970)
T COG5656 466 IPAFRSNYGFLKSRACEFISTI--EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPET 543 (970)
T ss_pred hHhhcCcccchHHHHHHHHHHH--HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHH
Q ss_pred hHHHHHHhhccCCc-------------chhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccC------ChHHHHHHH
Q 003146 433 VSPLLQLLFSVTSV-------------LMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLC------SPTIQYHLL 493 (844)
Q Consensus 433 v~~Lv~lL~~~~~~-------------~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~------~~~~~~~a~ 493 (844)
+..|+.+-+.-+.+ +..+.--|.....+|.. ..+..-.+++.++ ..+-+..|.
T Consensus 544 mekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~--------qFlkiaq~l~ens~d~~s~vDDKqmaas 615 (970)
T COG5656 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR--------QFLKIAQSLLENSSDTSSVVDDKQMAAS 615 (970)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH--------HHHHHHHHHHcCCccccccccHHHHHHH
Q ss_pred HHHHHhhcCCChhHHHHHHH---hCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCC
Q 003146 494 HALNSIAAHSSASNVRRKMK---ENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSS 570 (844)
Q Consensus 494 ~~L~~L~~~~~~~~~~~~i~---~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~ 570 (844)
++|..+.+--=.-+.+..+. +....|.+--.+.+.-.+.-+.|+..+... .....++. .+.-+..+.+.+++.+.
T Consensus 616 GiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~-tf~skeI~-pimwgi~Ell~~~l~~~ 693 (970)
T COG5656 616 GILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGY-TFMSKEIE-PIMWGIFELLLNLLIDE 693 (970)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh-hHHHHHhh-hhhhHHHHHHHhccccc
Q ss_pred CCHHHHHHHHHHHhcC
Q 003146 571 TSENEKAAAVGILSNL 586 (844)
Q Consensus 571 ~~~~~~~~a~~~L~~L 586 (844)
....-...++-++.|+
T Consensus 694 ~t~~y~ee~~~al~nf 709 (970)
T COG5656 694 ITAVYSEEVADALDNF 709 (970)
T ss_pred chhhhHHHHHHHHHHH
No 299
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.70 E-value=3.6e+02 Score=30.89 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhh
Q 003146 642 KLQQYSVQHGVIRLLVKLLSSE-SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLV 720 (844)
Q Consensus 642 ~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~ 720 (844)
.+..-+.+.+.|+.|+.+|... ++.++..|+..|+.+..-+.+.. .. .+...+.-.-+..|.
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~------------~~-----~~~~igpn~L~r~L~ 115 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP------------QN-----EQSSIGPNPLTRQLV 115 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc------------cc-----cccCCCccHHHHHHh
Confidence 3444566899999999999744 78899999988887765433211 00 000000011123444
Q ss_pred hcCCchHHHHhhcC-CChhhHHHHHHHHHhhh
Q 003146 721 KAGAVSPLIQVLEG-KEREADETVLGALASLL 751 (844)
Q Consensus 721 ~~~ai~~Lv~lL~~-~~~~v~~~A~~AL~~L~ 751 (844)
....|..|+..+-+ ........++..+.+|.
T Consensus 116 S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 116 SEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred ChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 55566666666542 33445555555566665
No 300
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=24.82 E-value=2.6e+02 Score=30.20 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhhcC--chHHHHHHhhcCC---HHHHHHHHHHHHHhhcCcccHHHHH
Q 003146 365 SKILMATALSRMELTDQSRASLGEDG--AIEPLVRMFRVGK---LEAKLSALNALQNLSLLAENIQRLV 428 (844)
Q Consensus 365 ~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~~~~~i~ 428 (844)
+|..|...+..+.........+...+ .+..|+++++.++ ..++..|+.+|..++.+..-...++
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455555655555556666666644 9999999998654 3678999999999998655444443
No 301
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.80 E-value=1.2e+03 Score=27.60 Aligned_cols=159 Identities=14% Similarity=0.037 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHhHhcChhhHHHHh---cCCcHHHHHHHhcCCHHHHHHHHHHHHHccCCChhHHHHhhhhCc-HHHHH
Q 003146 239 PYNRLIMIQILRNLASENADYKEKMA---NVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGC-IVMLV 314 (844)
Q Consensus 239 ~~~~~~a~~~L~~L~~~~~~~~~~i~---~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv 314 (844)
..++.-|+.+||-++.+...+-..+- ...-+..++..+..+...+..+++.|.|+-.++..+..+...... +..++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~ 637 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVI 637 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhh
Confidence 44555566666666544322221111 122444555555544556778899999998887666666542111 22222
Q ss_pred HhhcCCChHHHHHHHHHHHHhcc--CCccHHHHHHcCChHHHHHHhccCC-----HHHHHHHHHHHHHhhcCchhhhhhh
Q 003146 315 SMLSGNDPVASHDAGKLLNALSS--NTQNALHMAEAGYFKPLVQYLKEGS-----DMSKILMATALSRMELTDQSRASLG 387 (844)
Q Consensus 315 ~lL~s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i~ 387 (844)
..-..++..++..-.....|++. ...+ . +.|+.+.+...+.... -+.......+|++|...+.....+.
T Consensus 638 ~~~s~~~knl~ia~atlaln~sv~l~~~~-~---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A 713 (745)
T KOG0301|consen 638 EASSLSNKNLQIALATLALNYSVLLIQDN-E---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLA 713 (745)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHhcc-c---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHH
Confidence 22234556677665666667763 1111 1 1455555555554321 2334566778888888887777777
Q ss_pred hcCchHHHHHHhhc
Q 003146 388 EDGAIEPLVRMFRV 401 (844)
Q Consensus 388 ~~g~i~~Lv~lL~~ 401 (844)
..-.+..+++-+++
T Consensus 714 ~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 714 KNRSVDSIAKKLKE 727 (745)
T ss_pred HhcCHHHHHHHHHH
Confidence 76677777777764
No 302
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.66 E-value=2.5e+02 Score=23.57 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=46.1
Q ss_pred hcCCchHHHHhhc-CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhh----cCCHHHHHHHHHHHH
Q 003146 721 KAGAVSPLIQVLE-GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLE----SGNAKAQEKALWILE 792 (844)
Q Consensus 721 ~~~ai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~----~~~~~~~~~A~~~L~ 792 (844)
+...+.|+..++. ..+.++|+..+.++..++.... ..| ..|.+.+..++. ++++.+...|-..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-----~~i--~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-----ENI--KSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-----HHH--HhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3457799999975 6688999999999999997641 122 236777777773 456677777766554
No 303
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.42 E-value=1.8e+03 Score=29.12 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=75.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcC
Q 003146 187 DVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANV 266 (844)
Q Consensus 187 ~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~ 266 (844)
.++..|..........|++.+..+.+-+.. .+....+-......+.++...+|..|+..++..+...++....+-
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY-- 894 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYY-- 894 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH--
Confidence 344444433333445566666665543321 111111222234455566678999999999877755544322211
Q ss_pred CcHHHHHHHh-cCCHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhc---CCChHHHHHHHHHHHHhccC
Q 003146 267 GSLSALVKSL-TRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLS---GNDPVASHDAGKLLNALSSN 338 (844)
Q Consensus 267 g~i~~Lv~~L-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---s~d~~~~~~A~~~L~nLs~~ 338 (844)
..++... ..+..+|+.+++.++.+|.....-..+ +...+++|+ ++...+++.+..++.++=+.
T Consensus 895 ---~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 895 ---DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred ---HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 1222222 225678999999999998753222222 224444553 34444888888999888543
No 304
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.14 E-value=1.4e+03 Score=27.68 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=50.4
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
.|+.|..+....=+.++..++.++..|..+.+ +. +...+..||.-+.+++..+-..|..+|..|...+|
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kP--Eq-----E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKP--EQ-----ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCc--HH-----HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 45555555555667889999999988766542 22 22356788888889998999999999988877666
No 305
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.85 E-value=8.1e+02 Score=28.07 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=31.3
Q ss_pred hHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhh
Q 003146 506 SNVRRKMKENGAIHLLLPFLME-TNANIRAAALNLVCTLSK 545 (844)
Q Consensus 506 ~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls~ 545 (844)
..+.+-+.+.+.++.|+.+|.. .++.++.+|+.+|+.+.+
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4566667788999999999974 446789999988877754
No 306
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=22.06 E-value=2.5e+02 Score=30.36 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHcC--ChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 406 AKLSALNALQNLSLLAENIQRLVISG--IVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 406 ~~~~A~~aL~nLs~~~~~~~~i~~~g--~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
+|-.|+..|..+...+.....+...+ .+..|++++..+...+..++..|..+|..++...
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 45556666665665666777777766 9999999999888778889999999999988754
No 307
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.91 E-value=7e+02 Score=30.39 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCcc--HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhhhh
Q 003146 310 IVMLVSMLSGNDPVASHDAGKLLNALSSNTQN--ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD--QSRAS 385 (844)
Q Consensus 310 i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~ 385 (844)
...+...+.++++........++.++..-+.. +. ...-+++-....+..-.........+|.+++.-+ +-+..
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44555556677777777777777777643221 11 1222233333333333344556778889998854 34555
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
+.+.++..+++.++-+++.+....|...|+....
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 6668999999999999999999999999998875
No 308
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=1.4e+03 Score=29.71 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc----cC---CHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM----ET---NANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 484 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~----~~---~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
..-+++...+.++.++-...+.-.+ .| .+.+.++++ .+ ...+.+-+-.+|+.++.+.-+.+..-.-
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll------~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLL------HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhc------cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 3445777778888887655432111 11 333333333 23 3456677777787777654433333222
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 003146 557 DKYLNILVDITLSSTSENEKAAAVGILSNLP 587 (844)
Q Consensus 557 ~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 587 (844)
.+.+..++..-+...|..+-..|.+.+++++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 3355666666666667777778888888874
No 309
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=21.45 E-value=1.4e+02 Score=26.59 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA 346 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~ 346 (844)
+|+.|++-|.++++++...|..+|...+.++.+...++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 68899999999999999999999999887665444443
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.19 E-value=2.8e+02 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=32.5
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
++..|..-|++.++.|+.+++++|..++...+..+...+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~ 78 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQ 78 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHH
Confidence 5678888888889999999999999998877766655443
No 311
>PLN02742 Probable galacturonosyltransferase
Probab=21.04 E-value=7.3e+02 Score=28.61 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHH---HHHhhhccchHHHhhHHHHHHHHHhHhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHH
Q 003146 6 SRSFLEHVKQLQVLSK---EVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANS 82 (844)
Q Consensus 6 ~~~~~~l~~~l~~~~~---~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~ 82 (844)
-.++...++.|-++.. .-.+.++.. -+-.-.+||..+|+....+|.|-...+.+.+++.+..-++.++..+.+||.
T Consensus 69 ~~~~~~~~~~l~dql~~Ak~y~~ia~~~-~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~ 147 (534)
T PLN02742 69 MLSATSFSRQLADQITLAKAYVVIAKEH-NNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQD 147 (534)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHh
Confidence 3466666666655433 333444433 234567899999999999998875432343346899999999999999999
Q ss_pred HHHhcchhhHHHHHHHHHH
Q 003146 83 LIKSSNSRLVSKQMEDLTQ 101 (844)
Q Consensus 83 l~~~c~s~~i~~~~~~~~~ 101 (844)
.--+|+ .+..+++....
T Consensus 148 ~~~d~~--~~~~klr~~l~ 164 (534)
T PLN02742 148 LHYDSA--TTIMTLKAHIQ 164 (534)
T ss_pred ccccHH--HHHHHHHHHHH
Confidence 988884 34444444333
No 312
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.35 E-value=2.1e+02 Score=25.48 Aligned_cols=39 Identities=28% Similarity=0.196 Sum_probs=32.9
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI 429 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~ 429 (844)
+|+.|+.-|.++++.+...|...|...|..+.+...++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578999999999999999999999999988765555554
No 313
>PLN02718 Probable galacturonosyltransferase
Probab=20.15 E-value=7.1e+02 Score=29.21 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=60.3
Q ss_pred HHHHHHHHHHH---HHHHHhhhccchHHHhhHHHHHHHHHhHhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 003146 9 FLEHVKQLQVL---SKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIK 85 (844)
Q Consensus 9 ~~~l~~~l~~~---~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~ 85 (844)
..+.++.|-+. +.--.+.++.. -+-.-.+||..+++.+..++.|.... ..+ |+++..-++.+...+.|||...-
T Consensus 163 ~d~~v~~~~dql~~ak~y~~~a~~~-~~~~~~~el~~~i~e~~~~l~~~~~d-~~l-p~~~~~~~~~m~~~~~~a~~~~~ 239 (603)
T PLN02718 163 TDEKVKEIRDKIIQAKAYLNLAPPG-SNSQLVKELRLRTKELERAVGDATKD-KDL-SKSALQRMKSMEVTLYKASRVFP 239 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHhcccCC-CCC-CHhHHHHHHHHHHHHHHHHhccc
Confidence 44445544443 33333444443 24566789999999999999998533 446 77999999999999999999999
Q ss_pred hcchhhHHHHHHHHHH
Q 003146 86 SSNSRLVSKQMEDLTQ 101 (844)
Q Consensus 86 ~c~s~~i~~~~~~~~~ 101 (844)
+|+ .++.+++....
T Consensus 240 d~~--~~~~klr~~~~ 253 (603)
T PLN02718 240 NCP--AIATKLRAMTY 253 (603)
T ss_pred cHH--HHHHHHHHHHH
Confidence 994 44444443333
No 314
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=1.4e+02 Score=32.04 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCcChHHHhhCCCHHHHHHH--hCCCCchHHHHHHHHHHHhHhcChhhHHHHhcC
Q 003146 205 LELRELISAKTVDSEWINEAEIIAVLLNR--LGSSKPYNRLIMIQILRNLASENADYKEKMANV 266 (844)
Q Consensus 205 ~~l~~L~~~~~~~~~~i~~~~~~p~l~~l--L~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~ 266 (844)
+-+..||+.....+..+.+-|.+|.++.- .++.++-++.....|++.|..+|-+|++.+.+.
T Consensus 378 r~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 378 RFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 45788999888888999998888876654 357789999999999999998888887776553
No 315
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.03 E-value=1e+02 Score=27.02 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 726 SPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 726 ~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
..|+.+|.++++.||..|+..+..+..++ +...|-.+-.++-......|-.+|..+
T Consensus 50 ~aLl~LL~hpn~~VRl~AA~~~L~~~p~e-------------A~~~Le~ia~~~~~~~a~~a~~~l~~l 105 (106)
T PF09450_consen 50 DALLPLLKHPNMQVRLWAAAHTLRYAPEE-------------ARKVLEEIASSKWFPQAGDAGMCLRNL 105 (106)
T ss_dssp GGGGGGGGSS-HHHHHHHHHTTTTT-HHH-------------HHHHHHHHHHHT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCHHH-------------HHHHHHHHHHcCCCCCCCcHHHHHHhc
Done!