Query 003146
Match_columns 844
No_of_seqs 454 out of 3126
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 2.7E-41 9.3E-46 396.7 48.6 514 239-801 218-787 (810)
2 1jdh_A Beta-catenin; beta-cate 100.0 1.5E-40 5E-45 386.4 43.2 501 222-794 14-528 (529)
3 2z6g_A B-catenin; FULL-length, 100.0 7.8E-40 2.7E-44 394.9 43.4 535 226-798 116-665 (780)
4 2z6h_A Catenin beta-1, beta-ca 100.0 2.9E-39 9.9E-44 384.0 47.4 493 221-754 10-529 (644)
5 1jdh_A Beta-catenin; beta-cate 100.0 4.4E-40 1.5E-44 382.4 39.3 506 262-835 12-529 (529)
6 2z6g_A B-catenin; FULL-length, 100.0 6.6E-39 2.2E-43 386.8 45.9 552 184-789 116-694 (780)
7 2z6h_A Catenin beta-1, beta-ca 100.0 5.8E-39 2E-43 381.4 44.0 506 262-798 9-529 (644)
8 3now_A UNC-45 protein, SD10334 100.0 7.4E-39 2.5E-43 376.1 37.2 505 203-754 224-784 (810)
9 3ul1_B Importin subunit alpha- 100.0 5.4E-37 1.8E-41 353.4 37.9 417 307-799 56-481 (510)
10 3tpo_A Importin subunit alpha- 100.0 5.5E-36 1.9E-40 347.0 39.6 417 307-799 75-500 (529)
11 1xm9_A Plakophilin 1; armadill 100.0 9.9E-36 3.4E-40 337.6 31.4 411 309-801 3-454 (457)
12 3l6x_A Catenin delta-1; cateni 100.0 1.9E-34 6.4E-39 328.3 36.8 378 264-652 45-489 (584)
13 4b8j_A Importin subunit alpha- 100.0 4.8E-33 1.6E-37 323.1 44.0 409 307-799 73-499 (528)
14 1wa5_B Importin alpha subunit; 100.0 2.4E-32 8.2E-37 317.2 45.1 411 307-800 86-514 (530)
15 3ul1_B Importin subunit alpha- 100.0 4.9E-33 1.7E-37 320.4 37.1 401 390-834 57-476 (510)
16 3l6x_A Catenin delta-1; cateni 100.0 3E-33 1E-37 318.3 34.0 370 224-602 47-489 (584)
17 1xm9_A Plakophilin 1; armadill 100.0 2.7E-33 9.3E-38 317.6 32.1 359 268-637 3-449 (457)
18 3tpo_A Importin subunit alpha- 100.0 3.5E-32 1.2E-36 315.0 38.8 402 389-834 75-495 (529)
19 3nmz_A APC variant protein; pr 100.0 3.5E-33 1.2E-37 311.4 28.0 357 185-548 34-453 (458)
20 2jdq_A Importin alpha-1 subuni 100.0 6.2E-31 2.1E-35 298.7 42.0 406 309-799 21-446 (450)
21 3nmz_A APC variant protein; pr 100.0 7.1E-32 2.4E-36 300.9 30.9 366 307-684 31-454 (458)
22 4b8j_A Importin subunit alpha- 100.0 7.4E-31 2.5E-35 304.7 37.5 402 267-682 74-498 (528)
23 1wa5_B Importin alpha subunit; 100.0 5.8E-30 2E-34 297.2 42.5 414 266-754 86-512 (530)
24 2jdq_A Importin alpha-1 subuni 100.0 7.3E-29 2.5E-33 281.6 37.5 407 217-638 12-444 (450)
25 3nmw_A APC variant protein; AR 100.0 2.9E-28 9.8E-33 264.1 24.3 266 281-549 47-338 (354)
26 3nmw_A APC variant protein; AR 100.0 4.2E-28 1.5E-32 262.8 22.7 263 238-504 45-337 (354)
27 3opb_A SWI5-dependent HO expre 100.0 9.7E-27 3.3E-31 267.6 27.1 465 185-663 257-759 (778)
28 3opb_A SWI5-dependent HO expre 99.9 1.1E-24 3.9E-29 250.4 30.5 385 185-580 298-769 (778)
29 4hxt_A De novo protein OR329; 99.9 3.4E-23 1.2E-27 215.2 25.3 236 308-548 2-244 (252)
30 4db8_A Armadillo-repeat protei 99.9 5.7E-23 2E-27 213.8 21.8 234 307-545 11-251 (252)
31 4hxt_A De novo protein OR329; 99.9 1.4E-22 4.8E-27 210.5 24.1 237 225-465 2-243 (252)
32 4db8_A Armadillo-repeat protei 99.9 1.3E-22 4.5E-27 211.1 22.7 234 226-463 13-251 (252)
33 1b3u_A Protein (protein phosph 99.9 3.3E-20 1.1E-24 217.6 35.6 574 184-835 11-586 (588)
34 3tt9_A Plakophilin-2; cell adh 99.9 1.2E-21 4.3E-26 197.3 16.1 195 267-463 8-229 (233)
35 1b3u_A Protein (protein phosph 99.9 2.3E-19 7.7E-24 210.6 37.5 535 227-836 12-548 (588)
36 3tt9_A Plakophilin-2; cell adh 99.9 4.5E-21 1.5E-25 193.3 17.2 193 226-420 9-230 (233)
37 4db6_A Armadillo repeat protei 99.8 1.8E-19 6.2E-24 181.7 21.4 197 223-420 10-210 (210)
38 4db6_A Armadillo repeat protei 99.8 4.1E-19 1.4E-23 179.0 22.2 194 347-545 10-209 (210)
39 4fdd_A Transportin-1; heat rep 99.8 1.7E-18 5.8E-23 212.4 27.9 591 187-837 94-743 (852)
40 4fdd_A Transportin-1; heat rep 99.8 2.1E-17 7E-22 202.8 34.8 597 185-834 130-782 (852)
41 1xqr_A HSPBP1 protein; armadil 99.8 2.2E-17 7.6E-22 173.9 21.3 179 322-503 54-240 (296)
42 1xqr_A HSPBP1 protein; armadil 99.7 9.4E-17 3.2E-21 169.1 23.8 184 363-550 54-243 (296)
43 1qgr_A Protein (importin beta 99.7 1.5E-14 5.3E-19 177.8 37.3 600 184-841 129-876 (876)
44 3grl_A General vesicular trans 99.7 2.2E-14 7.7E-19 160.9 34.3 438 226-677 22-547 (651)
45 2bpt_A Importin beta-1 subunit 99.7 6.9E-14 2.4E-18 171.6 42.4 553 227-836 97-711 (861)
46 2bpt_A Importin beta-1 subunit 99.7 2.4E-14 8.1E-19 175.8 33.9 592 185-836 136-811 (861)
47 2vgl_B AP-2 complex subunit be 99.7 8.2E-15 2.8E-19 171.4 27.4 511 225-836 13-532 (591)
48 2vgl_B AP-2 complex subunit be 99.7 9.9E-15 3.4E-19 170.7 27.1 472 266-836 12-493 (591)
49 1qgr_A Protein (importin beta 99.6 1E-11 3.5E-16 152.6 50.8 611 173-836 25-722 (876)
50 3grl_A General vesicular trans 99.6 4.9E-12 1.7E-16 142.1 39.4 422 184-612 22-528 (651)
51 1u6g_C TIP120 protein, CAND1; 99.6 6.5E-13 2.2E-17 169.3 31.5 596 183-835 6-720 (1230)
52 1u6g_C TIP120 protein, CAND1; 99.5 1.3E-12 4.4E-17 166.6 32.3 511 226-797 7-599 (1230)
53 1oyz_A Hypothetical protein YI 99.5 3.7E-12 1.3E-16 134.2 26.3 257 429-793 21-279 (280)
54 1w63_A Adapter-related protein 99.5 3.4E-11 1.2E-15 141.3 36.2 478 268-836 71-577 (618)
55 1w63_A Adapter-related protein 99.5 7.5E-11 2.6E-15 138.3 38.6 515 185-796 36-577 (618)
56 1oyz_A Hypothetical protein YI 99.5 6.8E-12 2.3E-16 132.1 26.8 259 263-585 19-279 (280)
57 3ltm_A Alpha-REP4; protein eng 99.4 2.3E-11 7.8E-16 122.2 19.5 188 307-547 18-205 (211)
58 3ltm_A Alpha-REP4; protein eng 99.3 1.6E-11 5.6E-16 123.2 16.9 193 557-843 18-210 (211)
59 3ltj_A Alpharep-4; protein eng 99.3 5.3E-11 1.8E-15 118.5 19.2 185 307-544 13-197 (201)
60 1ibr_B P95, importin beta-1 su 99.3 5.8E-11 2E-15 134.2 21.2 388 352-797 4-438 (462)
61 1ibr_B P95, importin beta-1 su 99.2 4.4E-10 1.5E-14 127.0 22.3 392 314-754 7-439 (462)
62 3ltj_A Alpharep-4; protein eng 99.2 4.6E-10 1.6E-14 111.6 19.8 184 266-500 13-197 (201)
63 2vgl_A Adaptor protein complex 99.2 1.5E-07 5.2E-12 109.9 43.0 513 185-796 37-588 (621)
64 2vgl_A Adaptor protein complex 99.2 3.7E-08 1.2E-12 115.1 34.8 471 268-836 75-589 (621)
65 4gmo_A Putative uncharacterize 99.0 7.3E-08 2.5E-12 114.1 26.8 192 268-463 35-258 (684)
66 4ady_A RPN2, 26S proteasome re 98.7 1.7E-05 5.7E-10 93.9 35.1 337 356-794 365-717 (963)
67 4gmo_A Putative uncharacterize 98.7 3.9E-08 1.3E-12 116.4 13.1 192 308-500 34-257 (684)
68 1te4_A Conserved protein MTH18 98.5 1E-08 3.5E-13 94.1 -0.2 120 650-833 11-130 (131)
69 1te4_A Conserved protein MTH18 98.4 8.8E-08 3E-12 87.8 3.1 121 600-794 11-131 (131)
70 4ady_A RPN2, 26S proteasome re 98.3 5.3E-05 1.8E-09 89.6 25.2 275 350-684 393-680 (963)
71 3tjz_B Coatomer subunit gamma; 98.3 1.7E-05 5.8E-10 84.5 16.8 278 433-791 70-348 (355)
72 2qk2_A LP04448P; mini spindles 98.2 1.8E-05 6.3E-10 80.6 14.3 186 353-549 19-209 (242)
73 3b2a_A TON_1937, putative unch 98.1 0.00016 5.5E-09 70.1 18.4 225 516-794 33-259 (265)
74 1wa5_C Importin alpha RE-expor 98.1 0.015 5.1E-07 71.6 41.4 558 203-837 23-671 (960)
75 1ho8_A Vacuolar ATP synthase s 98.1 0.0011 3.6E-08 72.3 26.5 317 223-544 75-475 (480)
76 2qk2_A LP04448P; mini spindles 98.0 4.1E-05 1.4E-09 78.0 13.9 181 228-420 18-206 (242)
77 3b2a_A TON_1937, putative unch 98.0 0.00025 8.4E-09 68.9 17.4 205 164-379 7-219 (265)
78 3tjz_B Coatomer subunit gamma; 98.0 0.0002 6.9E-09 76.2 18.7 277 393-749 71-350 (355)
79 2db0_A 253AA long hypothetical 97.9 0.00054 1.8E-08 63.6 16.3 223 555-842 29-252 (253)
80 1wa5_C Importin alpha RE-expor 97.9 0.058 2E-06 66.3 40.5 466 188-680 90-670 (960)
81 2db0_A 253AA long hypothetical 97.9 0.00066 2.3E-08 63.0 16.8 219 514-798 30-248 (253)
82 1ho8_A Vacuolar ATP synthase s 97.8 0.009 3.1E-07 65.1 28.2 343 389-796 76-476 (480)
83 2qk1_A Protein STU2; STU2P, XM 97.8 0.00013 4.6E-09 74.4 13.3 189 354-547 21-222 (249)
84 2x1g_F Cadmus; transport prote 97.8 0.018 6.1E-07 71.1 34.6 469 226-753 40-616 (971)
85 2x19_B Importin-13; nuclear tr 97.6 0.24 8.3E-06 60.8 40.8 491 185-752 26-599 (963)
86 2iw3_A Elongation factor 3A; a 97.6 0.0041 1.4E-07 74.6 23.3 298 354-753 19-325 (986)
87 2iw3_A Elongation factor 3A; a 97.6 0.0043 1.5E-07 74.4 22.4 289 452-839 32-327 (986)
88 2x1g_F Cadmus; transport prote 97.5 0.033 1.1E-06 68.6 31.1 488 279-834 20-613 (971)
89 2qk1_A Protein STU2; STU2P, XM 97.5 0.0018 6.1E-08 66.0 15.1 188 229-419 20-220 (249)
90 2x19_B Importin-13; nuclear tr 97.4 0.55 1.9E-05 57.5 39.5 517 235-834 35-644 (963)
91 3m1i_C Exportin-1; heat repeat 97.4 0.49 1.7E-05 58.6 38.4 459 185-682 18-571 (1049)
92 3dad_A FH1/FH2 domain-containi 97.1 0.015 5E-07 60.3 17.3 153 393-548 121-289 (339)
93 3dad_A FH1/FH2 domain-containi 97.0 0.023 7.8E-07 58.9 17.5 149 228-376 121-284 (339)
94 3ibv_A Exportin-T; karyopherin 96.8 0.55 1.9E-05 57.4 30.4 212 185-420 8-261 (980)
95 4hat_C Exportin-1; heat repeat 96.3 3.4 0.00012 50.5 32.8 216 269-502 18-264 (1023)
96 3m1i_C Exportin-1; heat repeat 96.3 3.6 0.00012 50.7 35.2 206 279-502 29-264 (1049)
97 3ibv_A Exportin-T; karyopherin 96.1 3.9 0.00013 49.9 32.8 210 279-505 21-264 (980)
98 1lrv_A LRV, leucine-rich repea 96.1 0.0026 8.9E-08 64.1 3.0 45 770-831 197-241 (244)
99 3oc3_A Helicase MOT1, MOT1; re 95.9 0.086 2.9E-06 57.8 13.7 259 219-541 170-432 (800)
100 4ffb_C Protein STU2; tubulin f 95.9 0.086 3E-06 54.3 13.8 189 354-549 14-216 (278)
101 1lrv_A LRV, leucine-rich repea 95.4 0.013 4.6E-07 58.8 5.3 42 477-538 79-120 (244)
102 2fv2_A RCD1 required for cell 95.2 1.4 4.6E-05 43.7 18.2 228 280-543 15-266 (268)
103 4ffb_C Protein STU2; tubulin f 94.9 0.46 1.6E-05 48.7 15.4 186 227-420 12-213 (278)
104 2of3_A ZYG-9; multifunctional 94.8 0.67 2.3E-05 46.8 15.6 185 353-555 50-246 (266)
105 2of3_A ZYG-9; multifunctional 93.7 0.17 5.7E-06 51.2 8.4 102 652-797 133-237 (266)
106 3ebb_A Phospholipase A2-activa 92.8 1.2 4.3E-05 45.9 13.7 111 320-430 160-274 (304)
107 2fv2_A RCD1 required for cell 91.8 1.5 5.2E-05 43.3 12.0 144 284-428 74-233 (268)
108 3u0r_A Apoptosis inhibitor 5; 91.3 1.3 4.5E-05 47.9 11.8 122 359-498 38-160 (507)
109 3ebb_A Phospholipase A2-activa 90.9 13 0.00045 38.2 18.8 188 310-540 105-301 (304)
110 4hat_C Exportin-1; heat repeat 89.7 44 0.0015 40.7 40.1 216 185-419 18-263 (1023)
111 1upk_A MO25 protein; transfera 89.7 10 0.00036 39.1 16.4 197 264-465 75-285 (341)
112 1upk_A MO25 protein; transfera 89.6 21 0.00071 36.9 20.4 196 302-503 73-285 (341)
113 3l9t_A Putative uncharacterize 89.3 7.4 0.00025 38.1 14.3 142 435-598 74-217 (240)
114 3oc3_A Helicase MOT1, MOT1; re 88.1 0.57 1.9E-05 51.5 5.9 186 364-583 243-431 (800)
115 3c2g_A SYS-1 protein; beta-cat 88.0 5.1 0.00018 41.1 12.4 136 497-636 267-409 (619)
116 3l9t_A Putative uncharacterize 86.8 2.6 8.8E-05 41.3 9.3 132 652-836 72-207 (240)
117 3eg5_B Protein diaphanous homo 84.1 23 0.00079 37.7 16.2 148 425-573 104-279 (383)
118 3u0r_A Apoptosis inhibitor 5; 83.0 16 0.00053 39.7 13.9 125 272-415 34-159 (507)
119 1lsh_A Lipovitellin (LV-1N, LV 82.7 39 0.0013 41.4 19.5 207 308-547 356-578 (1056)
120 2f31_A Diaphanous protein homo 82.2 24 0.00082 34.6 14.4 125 449-573 69-213 (233)
121 2f31_A Diaphanous protein homo 79.4 49 0.0017 32.3 16.6 114 265-378 41-180 (233)
122 3gjx_A Exportin-1; transport, 77.1 1.4E+02 0.0048 36.4 37.1 211 228-464 31-276 (1073)
123 2bnx_A Diaphanous protein homo 71.9 52 0.0018 35.0 14.4 127 449-575 73-219 (386)
124 1lsh_A Lipovitellin (LV-1N, LV 70.9 19 0.00066 44.1 12.0 166 391-590 392-578 (1056)
125 3eg5_B Protein diaphanous homo 70.4 1.1E+02 0.0039 32.3 18.4 113 266-378 108-246 (383)
126 3c2g_A SYS-1 protein; beta-cat 70.1 83 0.0028 32.4 14.1 128 332-460 266-400 (619)
127 3a6p_A Exportin-5; exportin-5, 69.3 54 0.0019 40.8 15.8 126 362-501 26-162 (1204)
128 3gjx_A Exportin-1; transport, 68.8 79 0.0027 38.6 16.6 221 350-587 29-274 (1073)
129 2bnx_A Diaphanous protein homo 64.7 96 0.0033 32.9 14.6 98 281-378 73-184 (386)
130 3a6p_A Exportin-5; exportin-5, 58.9 1.9E+02 0.0064 35.9 17.9 207 279-503 26-278 (1204)
131 1x5b_A Signal transducing adap 56.1 40 0.0014 30.9 8.4 67 517-583 53-120 (163)
132 3qml_C Protein SLS1, nucleotid 55.6 53 0.0018 33.4 9.6 145 185-336 24-188 (315)
133 3gae_A Protein DOA1; UFD3, CDC 54.5 17 0.0006 36.2 6.1 99 319-420 101-218 (253)
134 3o2t_A Symplekin; heat repeat, 51.2 72 0.0025 33.8 10.4 67 650-751 62-128 (386)
135 3ldz_A STAM-1, signal transduc 50.1 30 0.001 30.8 6.4 72 472-544 42-113 (140)
136 3gs3_A Symplekin, LD45768P; he 49.4 88 0.003 31.0 10.3 104 652-795 54-172 (257)
137 3qml_C Protein SLS1, nucleotid 49.4 1.7E+02 0.0059 29.7 12.2 148 351-500 24-188 (315)
138 3g2s_A C-terminal fragment of 48.2 72 0.0025 28.7 8.6 67 517-583 49-121 (149)
139 1vsy_5 Proteasome activator BL 46.4 1.1E+02 0.0037 37.0 12.3 186 309-501 134-365 (997)
140 1juq_A ADP-ribosylation factor 45.9 82 0.0028 29.1 8.8 67 517-583 51-123 (171)
141 1mhq_A ADP-ribosylation factor 45.3 78 0.0027 28.4 8.3 67 517-583 39-111 (148)
142 1x5b_A Signal transducing adap 45.1 41 0.0014 30.9 6.6 71 473-544 53-124 (163)
143 3zyq_A Hepatocyte growth facto 43.1 63 0.0022 31.4 8.0 67 517-583 46-113 (226)
144 1mhq_A ADP-ribosylation factor 43.0 46 0.0016 30.0 6.4 72 473-545 39-116 (148)
145 1dvp_A HRS, hepatocyte growth 42.5 68 0.0023 31.0 8.1 65 517-581 43-108 (220)
146 1vdy_A Hypothetical protein (R 42.1 44 0.0015 29.8 6.0 71 473-544 50-129 (140)
147 3ldz_A STAM-1, signal transduc 41.4 1.5E+02 0.0051 26.2 9.6 66 517-583 43-109 (140)
148 3g2s_A C-terminal fragment of 41.3 64 0.0022 29.1 7.1 72 473-545 49-126 (149)
149 1juq_A ADP-ribosylation factor 37.7 52 0.0018 30.4 6.1 72 472-544 50-127 (171)
150 3pst_A Protein DOA1; protein d 36.0 1.1E+02 0.0037 32.8 8.8 127 284-420 244-390 (425)
151 3o2t_A Symplekin; heat repeat, 32.7 4.6E+02 0.016 27.5 13.3 119 348-498 62-180 (386)
152 3l3f_X Protein DOA1, DOA1/UFD3 32.5 74 0.0025 33.3 6.8 124 286-419 183-326 (362)
153 2kw6_A Cyclin-dependent kinase 28.6 28 0.00096 26.0 1.9 42 46-88 15-56 (65)
154 3pmr_A Amyloid-like protein 1; 25.1 3.4E+02 0.012 25.9 9.2 79 47-128 112-204 (219)
155 1elk_A Target of MYB1; superhe 24.2 2.5E+02 0.0085 25.3 8.1 66 517-582 54-124 (157)
156 3zyq_A Hepatocyte growth facto 24.0 99 0.0034 30.0 5.7 72 472-544 45-117 (226)
157 3gs3_A Symplekin, LD45768P; he 23.7 5.3E+02 0.018 25.3 14.0 117 350-498 54-170 (257)
158 3umh_A Amyloid beta A4 protein 23.5 3.6E+02 0.012 25.6 9.0 80 47-129 105-198 (211)
159 1elk_A Target of MYB1; superhe 21.9 1.6E+02 0.0055 26.6 6.3 71 473-544 54-129 (157)
160 3gae_A Protein DOA1; UFD3, CDC 21.6 1.6E+02 0.0055 29.0 6.8 102 401-502 101-218 (253)
161 4e9m_A Nucleotide-binding olig 21.2 57 0.0019 28.8 2.8 81 31-113 27-116 (144)
162 2m1l_A Cyclin-dependent kinase 20.8 56 0.0019 24.7 2.3 42 46-88 19-60 (69)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-41 Score=396.67 Aligned_cols=514 Identities=16% Similarity=0.146 Sum_probs=421.1
Q ss_pred chHHHHHHHHHHHhHhcCh--hhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHH
Q 003146 239 PYNRLIMIQILRNLASENA--DYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLV 314 (844)
Q Consensus 239 ~~~~~~a~~~L~~L~~~~~--~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv 314 (844)
.++|.++..+|..+-..-. ..++.+.+ -.-.++-..+.. +.+..-.|++++.++... ++....++...|++|.|+
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 5789999999988843311 11222211 112223333333 567778899999998765 456666664589999999
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhhhhhhhcCc-
Q 003146 315 SMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD--QSRASLGEDGA- 391 (844)
Q Consensus 315 ~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~- 391 (844)
.+++++++..++.|++++.+++.++.+|..+.+.|+ ++|+.+++++++.++..|+.+|.+++... +.+..+.+.|+
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 999999999999999999999999888999999875 99999999998889999999999997532 34434444455
Q ss_pred ---hHHHHHHhhcC--CHHHHHHHHHHHHHhhcCcccHHHHH-HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 392 ---IEPLVRMFRVG--KLEAKLSALNALQNLSLLAENIQRLV-ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 392 ---i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
++.|+++|.++ ++++++.|+++|.+|+.+++.+..++ +.|++|+|+.+|.+.+ ..++..++++|.||+.+.
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d---~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN---QSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCC---hHHHHHHHHHHHHHcCCc
Confidence 55677888887 78999999999999999999999988 4899999999998754 357899999999999852
Q ss_pred ------------------------------------hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHH
Q 003146 466 ------------------------------------SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVR 509 (844)
Q Consensus 466 ------------------------------------~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 509 (844)
..+.+.|+++.|+.+++++++.+|+.|+++|.||+.+ .+++
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r 529 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELR 529 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHH
Confidence 2345668999999999999999999999999999975 6799
Q ss_pred HHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH--HHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 003146 510 RKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA--EQLGDKYLNILVDITLSSTSENEKAAAVGILSNLP 587 (844)
Q Consensus 510 ~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~--~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 587 (844)
..+.+.|++++|+.++.++++.+++.|+++|.+++.+...... .....+++++|+.+|..+.+...+..|+.+|.||+
T Consensus 530 ~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 530 GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876543321 00112489999999985546566678999999999
Q ss_pred CCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHH-cCCHHHHHHHhccCCHH
Q 003146 588 VSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQ-HGVIRLLVKLLSSESVV 666 (844)
Q Consensus 588 ~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~ 666 (844)
..+++.++.+.++|+++.|+.++.+++. .+++.|+++++|++. .++.+..+.+ .|.+|.|+.++++++..
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~-------~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~ 680 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLMEDHL-------YLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEE 680 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSCCT-------THHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCH-------HHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence 9888899999999999999999987653 478899999999997 4455666665 78999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhh-cCCchHHHHhhcCCChhhHHHHHH
Q 003146 667 AKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVK-AGAVSPLIQVLEGKEREADETVLG 745 (844)
Q Consensus 667 vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~-~~ai~~Lv~lL~~~~~~v~~~A~~ 745 (844)
+|+.|+++|+|++.+++... ..+++ +|++++|+++|.+++++++..|++
T Consensus 681 vq~~Aa~ALanLt~~s~~~~------------------------------~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 681 TATACAGALAIITSVSVKCC------------------------------EKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHH------------------------------HHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHH------------------------------HHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999997544322 56667 899999999999999999999999
Q ss_pred HHHhhhccccchhhhHHHHhcCChHHHHHHhhc---CCHHHHHHHHHHHHHHHhhhhhh
Q 003146 746 ALASLLQDETWESGSNYLAKLSGTQAIIKVLES---GNAKAQEKALWILERIFRIEEHR 801 (844)
Q Consensus 746 AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~---~~~~~~~~A~~~L~~i~~~~~~~ 801 (844)
||.|++..+ ....+.|.++|++++|+.+++. ++.++.+.|..+|+.+..++.+.
T Consensus 731 aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 731 IILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 999999743 2357889999999999999954 47999999999999999877654
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.5e-40 Score=386.42 Aligned_cols=501 Identities=16% Similarity=0.152 Sum_probs=416.9
Q ss_pred hhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhc-CCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCCh
Q 003146 222 NEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMAN-VGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPA 298 (844)
Q Consensus 222 ~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~ 298 (844)
...|.+|.++++|+++++.++..+..+|.+++. +..++..+.. .|+++.|++.|.+ +.+.+..|+..|++|+..++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 456789999999999999999999999999975 4455555554 5899999999964 57789999999999999988
Q ss_pred hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-CccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 299 VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRME 377 (844)
Q Consensus 299 ~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (844)
++..+.. .|+||.|+.+|+++++.++..|+++|.||+.+ +.++..+.+.|+++.|+++|.+++..++..++.+|.+++
T Consensus 93 ~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 GLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999999999999976 456778889999999999999999999999999999999
Q ss_pred cC-chhhhhhhhcCchHHHHHHhhcCCH-HHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHH
Q 003146 378 LT-DQSRASLGEDGAIEPLVRMFRVGKL-EAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPAS 455 (844)
Q Consensus 378 ~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~ 455 (844)
.. ++++..+.+.|+++.|+.+|+++++ ..+..++.+|+||+.+++++..+++.|++++|+.++.+++ ..+++.++
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~---~~~~~~a~ 248 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS---QRLVQNCL 248 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC---HHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC---hHHHHHHH
Confidence 85 6889999999999999999998765 4566789999999999999999999999999999998764 45889999
Q ss_pred HHHHHHhcChh-hhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC--CHHH
Q 003146 456 AILARIAQSES-ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET--NANI 532 (844)
Q Consensus 456 ~~L~~l~~~~~-~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v 532 (844)
++|.+++.... .....++++.|+.++.++++++++.++++|.+|+.++ ...+..+.+.|+++.|++++.+. ++.+
T Consensus 249 ~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~~~~v 326 (529)
T 1jdh_A 249 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDI 326 (529)
T ss_dssp HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccCCHHHH
Confidence 99999998752 2233578999999999999999999999999999875 67889999999999999999863 3799
Q ss_pred HHHHHHHHHHhhhhhhH--HHH-HHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHH
Q 003146 533 RAAALNLVCTLSKDVYE--ELA-EQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISA 609 (844)
Q Consensus 533 ~~~A~~~L~~ls~~~~~--~i~-~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~l 609 (844)
+..|+.+|.+++.+.+. ... .....++++.|+++|.++.+..++..++++|+|++.+ +..+..+.+.|++|.|+.+
T Consensus 327 ~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~l 405 (529)
T 1jdh_A 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQL 405 (529)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHH
Confidence 99999999999875432 122 2344568999999999766678999999999999984 5557889999999999999
Q ss_pred hhcCCCCCCCCchhHHHHHHHHHHh--ccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccc
Q 003146 610 ATSSTITKTHSTPWLVESVAGILIR--FTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRK 687 (844)
Q Consensus 610 l~~~~~~~~~~~~~l~e~a~~aL~~--l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~ 687 (844)
+.+++. .++..+++++.+ ++.... ...++..++.+|++++.+..+
T Consensus 406 l~~~~~-------~v~~~a~~~l~n~~~~~~~~-----------------------~~~i~~~~~~al~~L~~~~~~--- 452 (529)
T 1jdh_A 406 LVRAHQ-------DTQRRTSMGGTQQQFVEGVR-----------------------MEEIVEGCTGALHILARDVHN--- 452 (529)
T ss_dssp HHHHHH-------HHC-----------CBTTBC-----------------------HHHHHHHHHHHHHHHTTSHHH---
T ss_pred HHHHhH-------HHHHHHhcccCchhhhcccc-----------------------HHHHHHHHHHHHHHHhcCchH---
Confidence 987543 456688888887 332111 234556788899998864321
Q ss_pred cccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcC
Q 003146 688 SKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLS 767 (844)
Q Consensus 688 ~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g 767 (844)
...+.+.|++++|+.++.+++++++..|..+|.++..+. .+...+.+.|
T Consensus 453 ----------------------------~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~---~~~~~i~~~~ 501 (529)
T 1jdh_A 453 ----------------------------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEG 501 (529)
T ss_dssp ----------------------------HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH---HHHHHHHHTT
T ss_pred ----------------------------HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH---HHHHHHHHcC
Confidence 266788999999999999999999999999999998654 4677899999
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 768 GTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 768 ~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
|+++|.++++++++.++++|.++|++|
T Consensus 502 ~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999876
No 3
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=7.8e-40 Score=394.88 Aligned_cols=535 Identities=16% Similarity=0.172 Sum_probs=426.7
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHh
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIG 304 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~ 304 (844)
.+|.+++.|.+++.+.+..+...++.. ++..+ ..|+++.|+++|.+ +..+|..|+..|.+|+.....+..+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 589999999999888988888887744 12223 37899999999987 67899999999999999888888887
Q ss_pred hhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chh
Q 003146 305 RIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQS 382 (844)
Q Consensus 305 ~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~ 382 (844)
...|+|+.|+.+|++ +++.++..|+.+|.+|+..++++..+.+.|+++.|+++|+++++.++..|+++|.+|+.. ++.
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 646899999999975 589999999999999999888999999999999999999999999999999999999986 467
Q ss_pred hhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc-CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 383 RASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL-LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +++++..+++.|+++.|+.+|++.+. ...++.++.+|++|
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~--~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--EKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH--HHHHHHHHHHHHHh
Confidence 7788889999999999999999999999999999996 47788899999999999999987653 45667899999999
Q ss_pred hcCh---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 462 AQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 462 ~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
+..+ ..+...|+++.|+.++..+++.++..++++|.+|+...... ....++++.|+.++.+++++++..|++
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-----~~~~~~i~~Lv~lL~~~d~~vr~~A~~ 421 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAG 421 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-----SCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-----hhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 9875 45667789999999999999999999999999999875321 112458999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCC-CHHHHHHHHHHHhcCCCCCHH---HHHHHHhCCChHHHHHHhhcCC
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSST-SENEKAAAVGILSNLPVSNKK---ATELLKKTNLLPSLISAATSST 614 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~~~~~---~~~~l~~~~~v~~L~~ll~~~~ 614 (844)
+|.+|+...+.........++++.|+++|.+++ .+.++..|+.+|++|+..+++ .+..+.+.|+++.|+.++.+++
T Consensus 422 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~ 501 (780)
T 2z6g_A 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501 (780)
T ss_dssp HHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 999998876555445556678999999998644 358899999999999875443 3567889999999999997654
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH--HhhcCcc--cccccc
Q 003146 615 ITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQ--LSQNSLS--LRKSKI 690 (844)
Q Consensus 615 ~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~--ls~~~~~--~~~~~~ 690 (844)
. ..+++.++++|.+++. .+..+..+.+.|++|.|+++|.++++++|+.|+|+++| +..+... +.....
T Consensus 502 ~------~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~ 573 (780)
T 2z6g_A 502 H------WPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573 (780)
T ss_dssp C------HHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred h------HHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence 2 2588899999999997 34556788899999999999988776666666666555 2211100 000000
Q ss_pred ccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChH
Q 003146 691 SKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQ 770 (844)
Q Consensus 691 ~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~ 770 (844)
+ | ++.-..+......+.+.|++++|+.+|.++++.++..|+.+|.+++.+. .+...|.+.||++
T Consensus 574 ~---a----------L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~---~~~~~i~~~g~i~ 637 (780)
T 2z6g_A 574 G---A----------LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATA 637 (780)
T ss_dssp H---H----------HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH---HHHHHHHHTTCHH
T ss_pred H---H----------HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHCCCHH
Confidence 0 0 0000001223366789999999999999999999999999999998664 4667899999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 771 AIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 771 ~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
+|+++++++++.+|++|.++|.++....
T Consensus 638 ~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 638 PLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998754
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=384.01 Aligned_cols=493 Identities=18% Similarity=0.167 Sum_probs=421.3
Q ss_pred HhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhc-CCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCC
Q 003146 221 INEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMAN-VGSLSALVKSLTR--DVEEQREAVGLLLDLSDLP 297 (844)
Q Consensus 221 i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~ 297 (844)
....|.+|.++.+|+++++.++..++.+|.+++... .++..+.. .|.++.|++.|.+ +.+.+..|+..|.+|+..+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 345678999999999999999999999999998654 45555554 4889999999986 5678999999999999998
Q ss_pred hhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-CccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 298 AVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRM 376 (844)
Q Consensus 298 ~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~L 376 (844)
+++..+.. .|+||.|+.+|+++++.++..|+++|.||+.+ +..+..+.+.|+++.|+++|++++...+..++.+|.++
T Consensus 89 ~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 89 EGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 89999987 89999999999999999999999999999975 45677788999999999999999888888888899999
Q ss_pred hc-CchhhhhhhhcCchHHHHHHhhcCC-HHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHH
Q 003146 377 EL-TDQSRASLGEDGAIEPLVRMFRVGK-LEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPA 454 (844)
Q Consensus 377 s~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a 454 (844)
+. +++++..+.+.|+++.|+.+|++++ ...+..++.+|+||+.+++++..+++.|+++.|+.++.+.+ ..+++.+
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~---~~~~~~a 244 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS---QRLVQNC 244 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSC---HHHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCC---HHHHHHH
Confidence 97 5688999999999999999999875 46688899999999999999999999999999999998764 4688999
Q ss_pred HHHHHHHhcCh-hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCC--HH
Q 003146 455 SAILARIAQSE-SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETN--AN 531 (844)
Q Consensus 455 ~~~L~~l~~~~-~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~ 531 (844)
+++|.|++... ......++++.|+.++.++++.+++.++++|.+|+.++ ...+..+.+.|+++.|+.++.+.+ +.
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~~~~~~~~ 322 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDRED 322 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHHccCCcHH
Confidence 99999998764 22223478999999999999999999999999999875 688889999999999999998743 79
Q ss_pred HHHHHHHHHHHhhhhhhH--HHHH-HhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHH
Q 003146 532 IRAAALNLVCTLSKDVYE--ELAE-QLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLIS 608 (844)
Q Consensus 532 v~~~A~~~L~~ls~~~~~--~i~~-~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ 608 (844)
++..|+++|.+++...+. .... ....++++.|+++|.++.+..++..++++|+||+.+ +..++.+.+.|+++.|+.
T Consensus 323 v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv~ 401 (644)
T 2z6h_A 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQ 401 (644)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHHH
Confidence 999999999999865331 1222 234558999999999766678999999999999985 455688999999999999
Q ss_pred HhhcCCCCC---------------CCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 003146 609 AATSSTITK---------------THSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASI 673 (844)
Q Consensus 609 ll~~~~~~~---------------~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~ 673 (844)
++.+++... .....++++.++.+|.+++. ++..+..+.+.|++|.|+++|.++++.++..|+.
T Consensus 402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~ 479 (644)
T 2z6h_A 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 479 (644)
T ss_dssp HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 998743111 11234678899999999997 4566778889999999999999999999999999
Q ss_pred HHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcc
Q 003146 674 SLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 674 aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
+|++++.+... + ..+.+.|++++|+.++.+++++++..|..||.++..+
T Consensus 480 aL~~l~~~~~~-~------------------------------~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 480 VLCELAQDKEA-A------------------------------EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHHHTSHHH-H------------------------------HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCHHH-H------------------------------HHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 99999864221 2 4567899999999999999999999999999999987
Q ss_pred c
Q 003146 754 E 754 (844)
Q Consensus 754 ~ 754 (844)
.
T Consensus 529 ~ 529 (644)
T 2z6h_A 529 K 529 (644)
T ss_dssp S
T ss_pred C
Confidence 6
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=4.4e-40 Score=382.43 Aligned_cols=506 Identities=18% Similarity=0.174 Sum_probs=417.6
Q ss_pred HHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCC
Q 003146 262 KMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNT 339 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~ 339 (844)
.....|+++.|+++|.+ +...|..|+..|.+++..+..+..+....|+++.|+.+|.+ +++.++..|+.+|.+|+.++
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 34567899999999987 67899999999999999988887877646999999999974 58999999999999999988
Q ss_pred ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 003146 340 QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLS 418 (844)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 418 (844)
+++..+.+.|+++.|+++|+++++.++..++++|.+++.. ++.+..+.+.|++|.|+.+|+++++.++..++.+|.+++
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987 467888888999999999999999999999999999999
Q ss_pred cC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhccCChHHHHHHHH
Q 003146 419 LL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLH 494 (844)
Q Consensus 419 ~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~ 494 (844)
.. ++++..+++.|+++.|+.+|.+.+. ...+..+..+|++++.++ ..+...|+++.|+.++.++++.++..+++
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTY--EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCC--HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCCh--HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 75 6788899999999999999987753 456788999999999876 45566789999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCC-CCH
Q 003146 495 ALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSS-TSE 573 (844)
Q Consensus 495 ~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~-~~~ 573 (844)
+|.+||...+... ...|+++.|+.++.+++++++..|+++|.+++.+.++........++++.|+++|.++ +++
T Consensus 250 ~L~~l~~~~~~~~-----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~ 324 (529)
T 1jdh_A 250 TLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324 (529)
T ss_dssp HHHHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCChhhH-----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHH
Confidence 9999998753211 1236899999999999999999999999999876554444445566899999999863 347
Q ss_pred HHHHHHHHHHhcCCCCCHH---HHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHc
Q 003146 574 NEKAAAVGILSNLPVSNKK---ATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQH 650 (844)
Q Consensus 574 ~~~~~a~~~L~~L~~~~~~---~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~ 650 (844)
.++..++++|+||+.+++. .+..+.+.|+++.|+.++.+++. ..+++.++++|.+++.. ++.+..+.+.
T Consensus 325 ~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~------~~v~~~a~~~l~nl~~~--~~~~~~~~~~ 396 (529)
T 1jdh_A 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH------WPLIKATVGLIRNLALC--PANHAPLREQ 396 (529)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC------HHHHHHHHHHHHHHTTS--GGGHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc------hHHHHHHHHHHHHHhcC--hhhhHHHHHc
Confidence 8999999999999876433 57788999999999999987541 25788999999999974 3445678899
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHH
Q 003146 651 GVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQ 730 (844)
Q Consensus 651 g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~ 730 (844)
|++|.|+++|+++++.+|+.|+|+++|.... + |
T Consensus 397 ~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~---------------------------------------~-~------- 429 (529)
T 1jdh_A 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV---------------------------------------E-G------- 429 (529)
T ss_dssp THHHHHHHHHHHHHHHHC-----------CB---------------------------------------T-T-------
T ss_pred CCHHHHHHHHHHHhHHHHHHHhcccCchhhh---------------------------------------c-c-------
Confidence 9999999999999999999999999983210 0 0
Q ss_pred hhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhcccc-c
Q 003146 731 VLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESA-Q 809 (844)
Q Consensus 731 lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a-~ 809 (844)
...+++++.++.+|++|+.+. .+...+.+.|++++|+.++.++++++++.|.++|.++....+.+..+.... .
T Consensus 430 ---~~~~~i~~~~~~al~~L~~~~---~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~ 503 (529)
T 1jdh_A 430 ---VRMEEIVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503 (529)
T ss_dssp ---BCHHHHHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred ---ccHHHHHHHHHHHHHHHhcCc---hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCCh
Confidence 013456688899999998754 355778999999999999999999999999999999987666666555433 4
Q ss_pred hhHHhhhhcCCCCchHHHHHHHHHHh
Q 003146 810 VVLIDLAQNGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 810 ~~Lv~ll~~~~~~~~~~aa~~L~~l~ 835 (844)
.+|.++++++|+++++.|..+|.+|+
T Consensus 504 ~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 504 APLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999873
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=6.6e-39 Score=386.82 Aligned_cols=552 Identities=16% Similarity=0.145 Sum_probs=436.6
Q ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHH
Q 003146 184 GIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKM 263 (844)
Q Consensus 184 ~i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i 263 (844)
+++.++..|.+++......++..+... ++..+. .|.+|.++.+|.++++.++..++.+|.+|+. ...++..+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i 187 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAI 187 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHH
Confidence 578899999888776555555544432 123444 6689999999999999999999999999975 34555566
Q ss_pred hc-CCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-C
Q 003146 264 AN-VGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-T 339 (844)
Q Consensus 264 ~~-~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~ 339 (844)
.. .|.++.|++.|.+ +.+.+..|+..|.+|+..+.++..+.. .|+||.|+.+|+++++.++..|+++|.||+.+ +
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 64 4899999999975 567899999999999999888888887 89999999999999999999999999999976 4
Q ss_pred ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHH-HHHHHHHHHHHh
Q 003146 340 QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLE-AKLSALNALQNL 417 (844)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~A~~aL~nL 417 (844)
..+..+.+.|+++.|+++|.+++..++..++.+|.+++.. ++++..+.+.|+++.|+.+|+++++. .+..++.+|++|
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5677777899999999999999888888999999999974 68899999999999999999987764 466889999999
Q ss_pred hcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh-hhcccchHHHHHHhhccCChHHHHHHHHHH
Q 003146 418 SLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES-ILVNKDVAQQMLSLLNLCSPTIQYHLLHAL 496 (844)
Q Consensus 418 s~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~-~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 496 (844)
+.++.++..+++.|+++.|+.++.+.+ ..++..++++|.+|+.... .....++++.|+.++.+.++.+++.|+++|
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPS---QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSC---HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCc---hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999998664 4578999999999997752 223457899999999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHhCCcHHHHHHHhccC-C-HHHHHHHHHHHHHhhhhhhHH--HH-HHhchhhHHHHHHHhcCCC
Q 003146 497 NSIAAHSSASNVRRKMKENGAIHLLLPFLMET-N-ANIRAAALNLVCTLSKDVYEE--LA-EQLGDKYLNILVDITLSST 571 (844)
Q Consensus 497 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~-~~v~~~A~~~L~~ls~~~~~~--i~-~~l~~~~l~~Lv~lL~~~~ 571 (844)
.+|+.++ ...+..+.+.|+++.|+.++.+. + +.++..|+++|.+|+...++. .. .....++++.|+++|..+.
T Consensus 424 ~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~ 501 (780)
T 2z6g_A 424 SNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501 (780)
T ss_dssp HHHTSSC--HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHhCC--HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 9999875 67888999999999999999873 3 489999999999998654321 11 2234557999999999766
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCC---------------CCCCchhHHHHHHHHHHhcc
Q 003146 572 SENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTIT---------------KTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 572 ~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~---------------~~~~~~~l~e~a~~aL~~l~ 636 (844)
+..++..++++|+||+. .+..+..+.+.|+++.|+.++.+++.. ......++++.++.+|.+++
T Consensus 502 ~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La 580 (780)
T 2z6g_A 502 HWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA 580 (780)
T ss_dssp CHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHh
Confidence 67899999999999988 566678899999999999999764310 01112457889999999998
Q ss_pred CCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccc
Q 003146 637 DPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKST 716 (844)
Q Consensus 637 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~ 716 (844)
. +++.+..+.+.|++|.|+++|.++++.++..|+.+|++++.+... +
T Consensus 581 ~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~-~------------------------------ 627 (780)
T 2z6g_A 581 R--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-A------------------------------ 627 (780)
T ss_dssp T--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHH-H------------------------------
T ss_pred c--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH-H------------------------------
Confidence 6 567777889999999999999999999999999999999854222 2
Q ss_pred hHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHH
Q 003146 717 FCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALW 789 (844)
Q Consensus 717 ~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~ 789 (844)
..+.+.|++++|+.++.+++++|+..|..||.++..+.. ....+ ..+++.+..++.+.+ ..+..|..
T Consensus 628 ~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~-~~~~~----~l~~~ll~~l~~~~~-~~w~~~~~ 694 (780)
T 2z6g_A 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP-QDYKK----RLSVELTSSLFRTEP-MTWNETGD 694 (780)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC-TTHHH----HHHHHHHHHC--------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-Hhhhc----cccHHHHHHHHhCCC-cccccCcc
Confidence 567789999999999999999999999999999998763 11111 115555666665443 34444443
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.8e-39 Score=381.40 Aligned_cols=506 Identities=17% Similarity=0.173 Sum_probs=411.0
Q ss_pred HHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCC
Q 003146 262 KMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNT 339 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~ 339 (844)
.....|+++.|+++|.+ +...|..|+..|.+++..+..+..+....|+++.|+.+|.+ +++.++..|+.+|.+|+.++
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 44678999999999987 67899999999999999988888777646999999999986 48999999999999999988
Q ss_pred ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 003146 340 QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLS 418 (844)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 418 (844)
+++..+.+.|+++.|+++|+++++.++..++.+|.+++.. +..+..+.+.|++|.|+.+|+++++..+..++.+|.+|+
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999986 467778888999999999999999999999999999999
Q ss_pred c-CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccchHHHHHHhhccCChHHHHHHHH
Q 003146 419 L-LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLH 494 (844)
Q Consensus 419 ~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~ 494 (844)
. +++++..+++.|+++.|+.+|.+.+. ..+++.++.+|++++.++ ..+...|+++.|+.++..+++.+++.+++
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~--~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTY--EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCC--HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCCh--HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 6 67899999999999999999987753 457789999999999875 45667789999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCC-H
Q 003146 495 ALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTS-E 573 (844)
Q Consensus 495 ~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~-~ 573 (844)
+|.+||....... ...++++.|+.++.+++++++..|+++|.+|+.+.+.........++++.|+.+|.++++ +
T Consensus 247 ~L~nL~~~~~~~~-----~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 247 TLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHGGGCTTCC-----SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhcchhhh-----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 9999998753211 123689999999999999999999999999987655444444556689999999986443 7
Q ss_pred HHHHHHHHHHhcCCCCCH---HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHc
Q 003146 574 NEKAAAVGILSNLPVSNK---KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQH 650 (844)
Q Consensus 574 ~~~~~a~~~L~~L~~~~~---~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~ 650 (844)
.++..++.+|++|+..++ ..+..+.+.|+++.|+.+|.+++. ..+++.++++|.+++.. ++.+..+.+.
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~------~~v~~~a~~~L~nLa~~--~~~~~~i~~~ 393 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH------WPLIKATVGLIRNLALC--PANHAPLREQ 393 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC------HHHHHHHHHHHHHHTTS--GGGHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc------hHHHHHHHHHHHHHccC--HHHHHHHHHc
Confidence 899999999999986443 446668889999999999976531 25888999999999984 3345778899
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHH--HhhcCcc--ccccccccceecCCCCCCcCcccccccCcccchHhhhcCCch
Q 003146 651 GVIRLLVKLLSSESVVAKSSASISLAQ--LSQNSLS--LRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVS 726 (844)
Q Consensus 651 g~i~~Lv~lL~~~~~~vk~~Aa~aL~~--ls~~~~~--~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~ 726 (844)
|++|.|+++|.++++.+|+.|+|+++| +..+... +...... .++.-..+......+.+.|+++
T Consensus 394 ~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~-------------aL~~La~~~~~~~~l~~~~~i~ 460 (644)
T 2z6h_A 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG-------------ALHILARDVHNRIVIRGLNTIP 460 (644)
T ss_dssp THHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHH-------------HHHHHTTSHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHH-------------HHHHHhcCHHHHHHHHhCCcHH
Confidence 999999999998777777777776665 2211100 0000000 0000001112235677899999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 727 PLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 727 ~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
+|+.+|.+++++++..|..+|.++..+. .....|.+.||+++|+++++++++.+|..|.++|.++....
T Consensus 461 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~~---~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 461 LFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCH---HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998764 35678899999999999999999999999999999997654
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-39 Score=376.06 Aligned_cols=505 Identities=16% Similarity=0.113 Sum_probs=402.3
Q ss_pred HHHHHHHHHhcCCcCh--HHHhhCCCHHHHHH-HhCCCCchHHHHHHHHHHHhHhcChhhH-HHHhcCCcHHHHHHHhcC
Q 003146 203 ALLELRELISAKTVDS--EWINEAEIIAVLLN-RLGSSKPYNRLIMIQILRNLASENADYK-EKMANVGSLSALVKSLTR 278 (844)
Q Consensus 203 a~~~l~~L~~~~~~~~--~~i~~~~~~p~l~~-lL~s~~~~~~~~a~~~L~~L~~~~~~~~-~~i~~~g~i~~Lv~~L~~ 278 (844)
+.-.+.++-.+-.+++ +.+.+ .|..++. .+..++.+....+.+++.++.....+.. ..+...|.++.++.++++
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s 301 (810)
T 3now_A 224 ASVCLARIYENMYYDEAKARFTD--QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT 301 (810)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHH--HHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC
Confidence 3334555554444432 22222 3444443 3566777888999999999998866654 455588999999999998
Q ss_pred -CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC--ccHHHHHHcCC----h
Q 003146 279 -DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT--QNALHMAEAGY----F 351 (844)
Q Consensus 279 -~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~--~~~~~i~~~g~----i 351 (844)
+...+..|++++.+.+.++..++.+.+ .|+ |+|+.+++++++.++..|+.+|.+++... ++....++.|. +
T Consensus 302 ~~~~~q~~A~~al~~aa~~~~~R~~I~~-~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv 379 (810)
T 3now_A 302 DDELQQRVACECLIAASSKKDKAKALCE-QGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLA 379 (810)
T ss_dssp SCHHHHHHHHHHHHHHTTSHHHHHTTHH-HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHH-cCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHH
Confidence 556888999999999888888888887 775 99999999999999999999999997532 23333444455 4
Q ss_pred HHHHHHhccC--CHHHHHHHHHHHHHhhcCchhhhhhhh-cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc------
Q 003146 352 KPLVQYLKEG--SDMSKILMATALSRMELTDQSRASLGE-DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE------ 422 (844)
Q Consensus 352 ~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~------ 422 (844)
+.++++|.++ +.+++..++++|.+|+..++.|..++. .|+||.|+.+|+++++.++..|+++|.||+...+
T Consensus 380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~ 459 (810)
T 3now_A 380 EACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP 459 (810)
T ss_dssp HHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhH
Confidence 4567777777 788999999999999999999888885 8999999999999999999999999999998532
Q ss_pred ------------------------cH---HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh---hhhcccc
Q 003146 423 ------------------------NI---QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE---SILVNKD 472 (844)
Q Consensus 423 ------------------------~~---~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~~ 472 (844)
++ +.++++|++|+|+.+|.+++ ..+++.|+++|.||+.++ ..+.+.|
T Consensus 460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s---~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G 536 (810)
T 3now_A 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES---HNSQELIARVLNAVCGLKELRGKVVQEG 536 (810)
T ss_dssp SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC---HHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 12 67889999999999998765 468999999999999875 4677889
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-HHHHHHHHHHHHhhhhhhHHH
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-NIRAAALNLVCTLSKDVYEEL 551 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~v~~~A~~~L~~ls~~~~~~i 551 (844)
+++.|+.++.++++..++.|+++|.+||.+.+...........|++++|+.+|.++.. ..+..|+++|.||+...+...
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999865322211000123599999999987643 556789999999998755443
Q ss_pred HHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHh-CCChHHHHHHhhcCCCCCCCCchhHHHHHHH
Q 003146 552 AEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKK-TNLLPSLISAATSSTITKTHSTPWLVESVAG 630 (844)
Q Consensus 552 ~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~-~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~ 630 (844)
...+..++++.|+.++.+ +++.++..|+.+|+||+.+ +..+..+.+ .|+++.|+.++.+++. .+++.|++
T Consensus 617 ~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~-------~vq~~Aa~ 687 (810)
T 3now_A 617 QRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDE-------ETATACAG 687 (810)
T ss_dssp HHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSH-------HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCH-------HHHHHHHH
Confidence 344556789999999984 6778999999999999984 455666665 7999999999987553 58889999
Q ss_pred HHHhccCCCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCccccc
Q 003146 631 ILIRFTDPSDKKLQQYSVQ-HGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDG 709 (844)
Q Consensus 631 aL~~l~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~ 709 (844)
+|.+++... +...+.+.+ .|++|.|+++|.++++.+|..|+++|+|+..++...
T Consensus 688 ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~------------------------ 742 (810)
T 3now_A 688 ALAIITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI------------------------ 742 (810)
T ss_dssp HHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH------------------------
T ss_pred HHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH------------------------
Confidence 999999743 333445666 899999999999999999999999999998755432
Q ss_pred ccCcccchHhhhcCCchHHHHhhcCC---ChhhHHHHHHHHHhhhccc
Q 003146 710 YCFVKSTFCLVKAGAVSPLIQVLEGK---EREADETVLGALASLLQDE 754 (844)
Q Consensus 710 ~~~~~~~~~l~~~~ai~~Lv~lL~~~---~~~v~~~A~~AL~~L~~~~ 754 (844)
...++++|++++|+.+|... +.++.+.|+.||.++...+
T Consensus 743 ------~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 743 ------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp ------HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 27788999999999999644 7899999999999998765
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.4e-37 Score=353.43 Aligned_cols=417 Identities=17% Similarity=0.207 Sum_probs=348.3
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCcc--HHHHHHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcC-chh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQN--ALHMAEAGYFKPLVQYLKEG-SDMSKILMATALSRMELT-DQS 382 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~-~~~ 382 (844)
...|+.+|..++|+|++.|..|+..+++|.+.+.| ...+++.|++|+||++|+.+ ++.++..|+++|.|++.. +++
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 34699999999999999999999999987654443 78899999999999999755 578999999999999875 578
Q ss_pred hhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 383 RASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
+..+.+.|+||.|+.+|+++++.+++.|+++|+||+.+ ++++..+++.|++++|+.+|...+...
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~-------------- 201 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST-------------- 201 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG--------------
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchh--------------
Confidence 88999999999999999999999999999999999987 557888889999999999997654210
Q ss_pred hcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 003146 462 AQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVC 541 (844)
Q Consensus 462 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~ 541 (844)
.....+..++++|.++|.+.. .........++++.|+.++.+++++++..|+++|+
T Consensus 202 ----------------------~~~~~~~~a~~~L~nl~~~~~--~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 202 ----------------------LACGYLRNLTWTLSNLCRNKN--PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp ----------------------SCHHHHHHHHHHHHHHHCCCS--SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----------------------hhHHHHHHHHHHHHHHhhccc--chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112334456677777776542 11222334568999999999999999999999999
Q ss_pred HhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCc
Q 003146 542 TLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHST 621 (844)
Q Consensus 542 ~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~ 621 (844)
+|+.+..+........+.++.|+.+|. +++..++..++.+|+|++..++..+..+.+.|+++.|+.++.+++.
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~------ 330 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------ 330 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSH------
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhc-CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCH------
Confidence 999776655545556678999999998 4788899999999999999899999999999999999999987653
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCC
Q 003146 622 PWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSAD 701 (844)
Q Consensus 622 ~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 701 (844)
.+++.++++|.+++.. +++.+..+.+.|++|.|+.++.++++.+|+.|+++|+|++.+...
T Consensus 331 -~v~~~A~~aL~nl~a~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~----------------- 391 (510)
T 3ul1_B 331 -NIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV----------------- 391 (510)
T ss_dssp -HHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-----------------
T ss_pred -HHHHHHHHHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-----------------
Confidence 5889999999999984 455667888999999999999999999999999999999875432
Q ss_pred CcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc----chhhhHHHHhcCChHHHHHHhh
Q 003146 702 AFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET----WESGSNYLAKLSGTQAIIKVLE 777 (844)
Q Consensus 702 ~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~----~~~~~~~i~~~g~i~~lv~ll~ 777 (844)
+....+++.|++++|+.+|.+.|++++..++.+|.++..... .++....+.++||+..|-.+..
T Consensus 392 ------------~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 392 ------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred ------------HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 223568899999999999999999999999999999986432 2345667899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhh
Q 003146 778 SGNAKAQEKALWILERIFRIEE 799 (844)
Q Consensus 778 ~~~~~~~~~A~~~L~~i~~~~~ 799 (844)
+.|.+++++|..+|+++|..++
T Consensus 460 ~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 460 HENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp CSSHHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999997643
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.5e-36 Score=346.99 Aligned_cols=417 Identities=17% Similarity=0.208 Sum_probs=347.3
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc--cHHHHHHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcCc-hh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ--NALHMAEAGYFKPLVQYLKEG-SDMSKILMATALSRMELTD-QS 382 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~~-~~ 382 (844)
...++.++..+.++|++.+..|+..+++|-+.+. ....+++.|++|.|+++|..+ ++..+..|+++|.+++..+ +.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4468999999999999999999999998754333 477899999999999999755 5788999999999999865 67
Q ss_pred hhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 383 RASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
+..+.+.|+||.|+.+|.++++.+++.|+++|+||+.+ ++++..+++.|++++|+.+|...+...
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~-------------- 220 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST-------------- 220 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG--------------
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH--------------
Confidence 78889999999999999999999999999999999986 568888899999999999997654210
Q ss_pred hcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHH
Q 003146 462 AQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVC 541 (844)
Q Consensus 462 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~ 541 (844)
........++++|.++|.+.. .........|+++.|+.++.+++++++..|+++|.
T Consensus 221 ----------------------~~~~~~~~a~~~L~nl~~~~~--~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 221 ----------------------LACGYLRNLTWTLSNLCRNKN--PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp ----------------------SCHHHHHHHHHHHHHHHCCCT--TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHHHHHHHhccc--chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 112234456667777776542 11222334568999999999999999999999999
Q ss_pred HhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCc
Q 003146 542 TLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHST 621 (844)
Q Consensus 542 ~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~ 621 (844)
+++.+..+........+.++.|+.+|. +++..++..++.+|+|++.+++..+..+.+.|+++.|+.++.+++.
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~------ 349 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------ 349 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH------
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCH------
Confidence 998776655544556778999999998 4788999999999999999899999999999999999999987653
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCC
Q 003146 622 PWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSAD 701 (844)
Q Consensus 622 ~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 701 (844)
.+++.++++|.+++.. +++....+.+.|++|.|+.++.++++.+|..|+++|+|++.+...
T Consensus 350 -~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~----------------- 410 (529)
T 3tpo_A 350 -NIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV----------------- 410 (529)
T ss_dssp -HHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-----------------
T ss_pred -HHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-----------------
Confidence 5788999999999984 455567788999999999999999999999999999999865322
Q ss_pred CcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc----chhhhHHHHhcCChHHHHHHhh
Q 003146 702 AFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET----WESGSNYLAKLSGTQAIIKVLE 777 (844)
Q Consensus 702 ~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~----~~~~~~~i~~~g~i~~lv~ll~ 777 (844)
+....+++.|+|++|+.+|.+.|++++..++.||.++..-.. .++....+.++||+..|-.+..
T Consensus 411 ------------~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 411 ------------EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 478 (529)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred ------------HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence 223568899999999999999999999999999999985321 2345567899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhh
Q 003146 778 SGNAKAQEKALWILERIFRIEE 799 (844)
Q Consensus 778 ~~~~~~~~~A~~~L~~i~~~~~ 799 (844)
+.+.+++++|..+|+++|..++
T Consensus 479 ~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 479 HENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp CSSHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999997643
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=9.9e-36 Score=337.65 Aligned_cols=411 Identities=17% Similarity=0.186 Sum_probs=321.6
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhccCCc-cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhh
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ-NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASL 386 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i 386 (844)
.||.|+.+|+++++.++..|+++|.+|+.+++ ++..+++.|++++|+++|+++++.++..|+++|.+|+.. +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999997554 577999999999999999999999999999999999986 7999999
Q ss_pred hhcCchHHHHHHhh-cCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccC-----CcchhhHHHHHHHHHH
Q 003146 387 GEDGAIEPLVRMFR-VGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVT-----SVLMTLREPASAILAR 460 (844)
Q Consensus 387 ~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~~~~l~~~a~~~L~~ 460 (844)
.+.|+||+|+++|+ ++++.+++.|+++|+||+.+++++..+++ |++|+|+.+|..+. +.....+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~--------- 152 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSR--------- 152 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC-----------------
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhc---------
Confidence 99999999999999 88999999999999999999889999999 99999999995310 0000000
Q ss_pred HhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhC-CcHHHHHHHhcc------CCHHHH
Q 003146 461 IAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKEN-GAIHLLLPFLME------TNANIR 533 (844)
Q Consensus 461 l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~------~~~~v~ 533 (844)
...++.++.+|+++|.+||.+ ++++..+.+. |+++.|+.++.+ .+.+++
T Consensus 153 ---------------------e~~~~~v~~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 208 (457)
T 1xm9_A 153 ---------------------EVVDPEVFFNATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208 (457)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTH
T ss_pred ---------------------ccccHHHHHHHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHH
Confidence 014577888999999999986 6789999997 999999999986 355788
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC---------------CCCHHHHHHHH
Q 003146 534 AAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLP---------------VSNKKATELLK 598 (844)
Q Consensus 534 ~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~---------------~~~~~~~~~l~ 598 (844)
+.|+.+|++++....... . .....+...+..... .....+++.+.. ..++...+.++
T Consensus 209 e~a~~~L~nLs~~~~~~~----~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 209 ENCMCVLHNLSYRLDAEV----P-TRYRQLEYNARNAYT---EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp HHHHHHHHHHTTTHHHHS----C-CHHHHHHHTC-------------------------------CCCCCSSCCGGGGGG
T ss_pred HHHHHHHHhcccchhccC----c-chhhhcccccccccc---cccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence 899999999975432111 0 011111111110000 001111122111 01223456778
Q ss_pred hCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCH---HH-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 003146 599 KTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDK---KL-QQYSVQHGVIRLLVKLLSSESVVAKSSASIS 674 (844)
Q Consensus 599 ~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~---~~-~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~a 674 (844)
+.|+++.|+.+|.++.. ..+++.++++|.+++.+.++ .. |..+.+.|++|.|+++|.++++.+++.|+++
T Consensus 281 ~~~~l~~L~~lL~~~~~------~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~a 354 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKK------DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354 (457)
T ss_dssp SHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCC------HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHH
Confidence 88999999999987642 36889999999999986543 23 4445578999999999999999999999999
Q ss_pred HHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCC------hhhHHHHHHHHH
Q 003146 675 LAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKE------READETVLGALA 748 (844)
Q Consensus 675 L~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~------~~v~~~A~~AL~ 748 (844)
|+|++.+... ..++..|++++|+++|.+.+ +++..+++.+|.
T Consensus 355 L~nls~~~~~--------------------------------~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ 402 (457)
T 1xm9_A 355 LSNMSRHPLL--------------------------------HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp HHHHHTSGGG--------------------------------HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcCHHH--------------------------------HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 9999975433 45667789999999998764 368889999999
Q ss_pred hhhccccchhhhHHHHhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHHhhhhhh
Q 003146 749 SLLQDETWESGSNYLAKLSGTQAIIKVLESG-NAKAQEKALWILERIFRIEEHR 801 (844)
Q Consensus 749 ~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~-~~~~~~~A~~~L~~i~~~~~~~ 801 (844)
++.... ......+.++||+++|++++.++ ++.++++|.|+|+++|.+.+.+
T Consensus 403 ni~~~~--~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 403 NLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHhcC--HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 998654 24678899999999999999998 9999999999999999877654
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.9e-34 Score=328.27 Aligned_cols=378 Identities=17% Similarity=0.165 Sum_probs=317.4
Q ss_pred hcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC--C
Q 003146 264 ANVGSLSALVKSLTR-DVEEQREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN--T 339 (844)
Q Consensus 264 ~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~--~ 339 (844)
...++++.||++|.+ +.+.+..|++.|.+++. ++.++..|.. .|+||+||.+|+++++.+++.|+++|.||+.+ +
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 356799999999998 56788999999999996 6788888887 99999999999999999999999999999984 7
Q ss_pred ccHHHHHHcCChHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh------------------
Q 003146 340 QNALHMAEAGYFKPLVQYLKE-GSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFR------------------ 400 (844)
Q Consensus 340 ~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------------ 400 (844)
+||..|++.|+|++|+++|++ ++.+++.+++++|++|+.++++|..|.+ ++||+|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 899999999999999999998 4678899999999999999999999996 67999999872
Q ss_pred cCCHHHHHHHHHHHHHhhcCcc-cHHHHHHc-CChHHHHHHhhcc---CCcchhhHHHHHHHHHHHhcCh----------
Q 003146 401 VGKLEAKLSALNALQNLSLLAE-NIQRLVIS-GIVSPLLQLLFSV---TSVLMTLREPASAILARIAQSE---------- 465 (844)
Q Consensus 401 ~~~~~~~~~A~~aL~nLs~~~~-~~~~i~~~-g~v~~Lv~lL~~~---~~~~~~l~~~a~~~L~~l~~~~---------- 465 (844)
..++.+++.|+++|+||+.+.+ ++..+++. |++++|+.+|.+. .......++.|+++|+||+...
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 1246899999999999999865 58888875 6678999999863 1122457899999999998662
Q ss_pred -------------------hhhcccchHHHHHHhhcc-CChHHHHHHHHHHHHhhcCCCh--hHHHHHHHhCCcHHHHHH
Q 003146 466 -------------------SILVNKDVAQQMLSLLNL-CSPTIQYHLLHALNSIAAHSSA--SNVRRKMKENGAIHLLLP 523 (844)
Q Consensus 466 -------------------~~l~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~--~~~~~~i~~~g~i~~Lv~ 523 (844)
+.+.+.++++.|+.+|.. .++.++++|+++|.+||..... ...+..+.+.++++.|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 122344667889999964 5799999999999999986432 344567778899999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCCCCHHHHHH
Q 003146 524 FLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSST-------SENEKAAAVGILSNLPVSNKKATEL 596 (844)
Q Consensus 524 ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~ 596 (844)
+|.++++++++.|+++|+||+.+.. ....+..++++.||++|.... +.++...|+++|.||...++..++.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~ 440 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999998754 123445669999999998653 4677889999999998889999999
Q ss_pred HHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCC
Q 003146 597 LKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGV 652 (844)
Q Consensus 597 l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~ 652 (844)
+.+.|+++.|+.++++++. .....+.|+++|.++.. +.+.+..+.+.|+
T Consensus 441 I~~~g~I~~Lv~LL~s~~~-----~~~v~k~Aa~vL~nl~~--~~elr~~~kk~G~ 489 (584)
T 3l6x_A 441 LRETQGIEKLVLINKSGNR-----SEKEVRAAALVLQTIWG--YKELRKPLEKEGW 489 (584)
T ss_dssp HHHTTHHHHHHHHHTCSSS-----CHHHHHHHHHHHHHHHT--SHHHHHHHHTTTC
T ss_pred HHHCCChHHHHHHHhCCCC-----ChHHHHHHHHHHHHHHc--CHHHHHHHHHcCC
Confidence 9999999999999987531 23578899999999986 7787877777664
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.8e-33 Score=323.05 Aligned_cols=409 Identities=18% Similarity=0.207 Sum_probs=341.2
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC--ccHHHHHHcCChHHHHHHhccCC-HHHHHHHHHHHHHhhcC-chh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT--QNALHMAEAGYFKPLVQYLKEGS-DMSKILMATALSRMELT-DQS 382 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~Ls~~-~~~ 382 (844)
...+|.|+.+|.++|+..+..|+++|.++...+ ++...+++.|+++.|+++|.+++ +.++..|+++|.+++.. +++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 446999999999999999999999999996533 56888999999999999999987 89999999999999986 688
Q ss_pred hhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 383 RASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
+..+.+.|++|.|+.+|.++++.++..|+++|+||+.+ +.++..+++.|++++|+.+|..+.+ ..++..++++|.+|
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~--~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK--LSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC--HHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999977 5578888899999999999954432 56889999999999
Q ss_pred hcCh---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 462 AQSE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 462 ~~~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
+... ......++++.|+.++.++++.++..++++|.+++... ....+.+.+.|+++.|+.+|.++++.++..|++
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 9873 23334689999999999999999999999999999875 566678889999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCC
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKT 618 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~ 618 (844)
+|.+++...+.... .+.+.|+++.|+.++.++.
T Consensus 309 ~L~nl~~~~~~~~~-------------------------------------------~~~~~~~l~~L~~lL~~~~---- 341 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQ-------------------------------------------CIIDHQALPCLLSLLTQNL---- 341 (528)
T ss_dssp HHHHHTTSCHHHHH-------------------------------------------HHHTTTHHHHHHHHHHSCC----
T ss_pred HHHHHHcCCHHHHH-------------------------------------------HHHHhhhHHHHHHHHcCCC----
Confidence 99999864432221 2233456666667666541
Q ss_pred CCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcC-ccccccccccceecC
Q 003146 619 HSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNS-LSLRKSKISKWLCVP 697 (844)
Q Consensus 619 ~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~-~~~~~~~~~~~~~~~ 697 (844)
...+++.|+++|.+++.. +++....+.+.|++|.|+.+|.++++.+|..|+++|+|++... +.
T Consensus 342 --~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~------------- 405 (528)
T 4b8j_A 342 --KKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD------------- 405 (528)
T ss_dssp --CHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH-------------
T ss_pred --cHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH-------------
Confidence 124666777778877763 4444556778899999999999999999999999999999763 22
Q ss_pred CCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccc---------hhhhHHHHhcCC
Q 003146 698 PSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETW---------ESGSNYLAKLSG 768 (844)
Q Consensus 698 ~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~---------~~~~~~i~~~g~ 768 (844)
....+++.|++++|+.+|.+.+++++..|+.+|.++...... ......+.+.||
T Consensus 406 -----------------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 406 -----------------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp -----------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred -----------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 225677899999999999999999999999999999865421 135778999999
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhh
Q 003146 769 TQAIIKVLESGNAKAQEKALWILERIFRIEE 799 (844)
Q Consensus 769 i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~ 799 (844)
+..+..++++.++.++++|.++++++|...+
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999997643
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.4e-32 Score=317.23 Aligned_cols=411 Identities=19% Similarity=0.234 Sum_probs=344.8
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccC--CccHHHHHHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhcC-chh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSN--TQNALHMAEAGYFKPLVQYLKEG-SDMSKILMATALSRMELT-DQS 382 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~-~~~ 382 (844)
.+.++.|+..|+++++.++..|+.+|.++... +.++..+++.|+++.|+++|.++ ++.++..|+++|.+++.. ++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 67899999999999999999999999999653 45677888999999999999997 789999999999999986 467
Q ss_pred hhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003146 383 RASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARI 461 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l 461 (844)
+..+...|++|.|+.+|.++++.+++.|+++|+||+.+ ++++..++..|++++|+.++.+.+ ..++..++++|.+|
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK---PSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC---HHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999987 567888889999999999998743 46889999999999
Q ss_pred hcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHH
Q 003146 462 AQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAAL 537 (844)
Q Consensus 462 ~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~ 537 (844)
+.+. ......++++.|+.++.++++.++..++++|.+|+... ......+.+.|+++.|+.++.++++.++..|+
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHH
Confidence 9763 23344689999999999999999999999999999875 56667777889999999999888888888888
Q ss_pred HHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCC
Q 003146 538 NLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITK 617 (844)
Q Consensus 538 ~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~ 617 (844)
++|.+++.. ++...+.+.+.|+++.|+.++.+++
T Consensus 321 ~~L~~l~~~-------------------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~--- 354 (530)
T 1wa5_B 321 RAVGNIVTG-------------------------------------------NDLQTQVVINAGVLPALRLLLSSPK--- 354 (530)
T ss_dssp HHHHHHTTS-------------------------------------------CHHHHHHHHHTTHHHHHHHHTTCSC---
T ss_pred HHHHHHHcC-------------------------------------------CHHHHHHHHHcchHHHHHHHHcCCC---
Confidence 777776542 2223334456778888888887653
Q ss_pred CCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecC
Q 003146 618 THSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVP 697 (844)
Q Consensus 618 ~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~ 697 (844)
..+++.++++|.+++.. +++....+.+.|++|.|+.+|+++++.+|..|+++|++++......
T Consensus 355 ----~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~------------ 417 (530)
T 1wa5_B 355 ----ENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR------------ 417 (530)
T ss_dssp ----HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC------------
T ss_pred ----HHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc------------
Confidence 25788999999999874 3444556778999999999999999999999999999998753210
Q ss_pred CCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccc---------hhhhHHHHhcCC
Q 003146 698 PSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETW---------ESGSNYLAKLSG 768 (844)
Q Consensus 698 ~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~---------~~~~~~i~~~g~ 768 (844)
.+....+++.|++++|+.+|.+.++.++..|+.+|.++...... ..+...+.+.||
T Consensus 418 ---------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~ 482 (530)
T 1wa5_B 418 ---------------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG 482 (530)
T ss_dssp ---------------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH
T ss_pred ---------------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCc
Confidence 01225677899999999999999999999999999999975431 235677899999
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhh
Q 003146 769 TQAIIKVLESGNAKAQEKALWILERIFRIEEH 800 (844)
Q Consensus 769 i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~ 800 (844)
++.|..+++++++.++++|.++|+++|...+.
T Consensus 483 ~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 483 MEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 99999999999999999999999999987544
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.9e-33 Score=320.43 Aligned_cols=401 Identities=17% Similarity=0.215 Sum_probs=335.3
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc--cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--
Q 003146 390 GAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE--NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-- 465 (844)
Q Consensus 390 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-- 465 (844)
..|+.+|+.+.++++..+..|+.+++.|.+... ....++++|+||+|+++|...+. ..++..|+++|+||+.+.
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~--~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC--SPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC--HHHHHHHHHHHHHHHTSCHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC--HHHHHHHHHHHHHHhcCCHH
Confidence 468999999999999999999999999876543 46889999999999999986553 458899999999998764
Q ss_pred --hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-----HHHHHHHH
Q 003146 466 --SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-----NIRAAALN 538 (844)
Q Consensus 466 --~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~v~~~A~~ 538 (844)
..+.+.|+++.|+.+|+++++.+++.|+++|.+|+.++ +.++..+.+.|++++|+.++..++. .+.+.+.+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 46778899999999999999999999999999999876 7899999999999999999987653 46788999
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCC
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKT 618 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~ 618 (844)
++.+++.+......-....+.++.|+++|. +++++++..++++|++|+.......+.+.+.|+++.|+.++.+++.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--- 288 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL--- 288 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH---
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCCh---
Confidence 999998754311000111346788999887 5788999999999999999888888899999999999999987653
Q ss_pred CCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCC
Q 003146 619 HSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPP 698 (844)
Q Consensus 619 ~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 698 (844)
.++..++.+|.+++... ......+.+.|++|.|+.+|+++++.+|+.|+++|+|++.+.....
T Consensus 289 ----~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~------------ 351 (510)
T 3ul1_B 289 ----PIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI------------ 351 (510)
T ss_dssp ----HHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHH------------
T ss_pred ----hhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHH------------
Confidence 57889999999998754 4446678899999999999999999999999999999997665533
Q ss_pred CCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhc
Q 003146 699 SADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLES 778 (844)
Q Consensus 699 ~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~ 778 (844)
..+++.|++++|+.+|.+++.+++..|++||.|++..... +....+.+.|++++|+.+|++
T Consensus 352 ------------------~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 352 ------------------QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp ------------------HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHTTCHHHHHHGGGC
T ss_pred ------------------HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcC
Confidence 6778899999999999999999999999999999986543 356778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhh-------hHhhccccc-hhHHhhhhcCCCCchHHHHHHHHHH
Q 003146 779 GNAKAQEKALWILERIFRIEEH-------RVKYGESAQ-VVLIDLAQNGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 779 ~~~~~~~~A~~~L~~i~~~~~~-------~~~~~~~a~-~~Lv~ll~~~~~~~~~~aa~~L~~l 834 (844)
+++.++..++++|.+|++..+. +..+....+ ..|.+|..+++.++++.|..+|...
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999976431 222222233 3556666788999999999999754
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3e-33 Score=318.31 Aligned_cols=370 Identities=18% Similarity=0.150 Sum_probs=313.1
Q ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC--ChhH
Q 003146 224 AEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL--PAVW 300 (844)
Q Consensus 224 ~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~--~~~~ 300 (844)
.+.+|.++++|.+++..++..|+.+|.+|+..+.+++..+.+.|+|+.||++|.+ +.+.+..|+++|++|+.. ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 4579999999999999999999999999998899999999999999999999998 567999999999999984 7899
Q ss_pred HHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhc------------------cC
Q 003146 301 RRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLK------------------EG 361 (844)
Q Consensus 301 ~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~------------------~~ 361 (844)
..|.+ .|+||+|+.+|++ ++..++++|+++|+||+.++++|..|++ |++++|+++|. ..
T Consensus 127 ~~I~~-~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 127 IAIKN-CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHH-TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence 99998 9999999999986 6889999999999999999999999996 57999999872 12
Q ss_pred CHHHHHHHHHHHHHhhcCc-hhhhhhhh-cCchHHHHHHhhc------CCHHHHHHHHHHHHHhhcCcc-----------
Q 003146 362 SDMSKILMATALSRMELTD-QSRASLGE-DGAIEPLVRMFRV------GKLEAKLSALNALQNLSLLAE----------- 422 (844)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~------~~~~~~~~A~~aL~nLs~~~~----------- 422 (844)
+..++.+++++|.||+..+ ++|..+.+ .|++++|+.+|++ .+...++.|+.+|+||+...+
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 4678899999999999976 56888887 5777899999975 456789999999999996521
Q ss_pred ---------------cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--------hhhcccchHHHHHH
Q 003146 423 ---------------NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--------SILVNKDVAQQMLS 479 (844)
Q Consensus 423 ---------------~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--------~~l~~~~~i~~Lv~ 479 (844)
....+.+.++|++|+.+|..... ..+++.|+++|+||+.+. .++...++++.|+.
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~--~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT--PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCC--HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 11122234567788999976543 468899999999998763 24566789999999
Q ss_pred hhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC--------CHHHHHHHHHHHHHhhhhhhHHH
Q 003146 480 LLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET--------NANIRAAALNLVCTLSKDVYEEL 551 (844)
Q Consensus 480 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--------~~~v~~~A~~~L~~ls~~~~~~i 551 (844)
+|.++++.+++.|+++|.+|+.+. .++..| ..|+++.|+++|.++ +.+++..|+++|.|+....+...
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~---~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDA---RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTC---SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCh---hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999885 345555 678999999999987 35789999999999987666665
Q ss_pred HHHhchhhHHHHHHHhcCC-CCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC
Q 003146 552 AEQLGDKYLNILVDITLSS-TSENEKAAAVGILSNLPVSNKKATELLKKTNL 602 (844)
Q Consensus 552 ~~~l~~~~l~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~ 602 (844)
......++++.|+.++.++ .++.++..|+.+|+++.. +.+++..+.+.|+
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-~~elr~~~kk~G~ 489 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-YKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-SHHHHHHHHTTTC
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-CHHHHHHHHHcCC
Confidence 5666777999999999864 478889999999999977 7888888887664
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.7e-33 Score=317.57 Aligned_cols=359 Identities=18% Similarity=0.179 Sum_probs=303.6
Q ss_pred cHHHHHHHhcC-CHHHHHHHHHHHHHccCCC-hhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-CccHHH
Q 003146 268 SLSALVKSLTR-DVEEQREAVGLLLDLSDLP-AVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQNALH 344 (844)
Q Consensus 268 ~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~~~~~ 344 (844)
+++.++++|.+ +.+.+..|++.|++++..+ ..+..+.. .|+||.|+.+|+++++.++..|+++|.||+.+ ++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 68999999998 5678999999999999765 45668887 99999999999999999999999999999986 889999
Q ss_pred HHHcCChHHHHHHhc-cCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh--------cC--------CHHHH
Q 003146 345 MAEAGYFKPLVQYLK-EGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFR--------VG--------KLEAK 407 (844)
Q Consensus 345 i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~ 407 (844)
|++.|++++|+++|+ +++.+++..++++|++|+.++++|..+.+ |++|+|+.+|. ++ ++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999999 88899999999999999999999999999 99999999993 32 34556
Q ss_pred HHHHHHHHHhhcCcccHHHHHHc-CChHHHHHHhhcc---CCcchhhHHHHHHHHHHHhcCh------------------
Q 003146 408 LSALNALQNLSLLAENIQRLVIS-GIVSPLLQLLFSV---TSVLMTLREPASAILARIAQSE------------------ 465 (844)
Q Consensus 408 ~~A~~aL~nLs~~~~~~~~i~~~-g~v~~Lv~lL~~~---~~~~~~l~~~a~~~L~~l~~~~------------------ 465 (844)
+.|+++|+|||.+++++..+++. |++|+|+.+|.+. ........+.++++|+|++...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 69999999999998899999997 9999999999862 1111346789999999986310
Q ss_pred ------------------------------------hhhcccchHHHHHHhhccC-ChHHHHHHHHHHHHhhcCCCh--h
Q 003146 466 ------------------------------------SILVNKDVAQQMLSLLNLC-SPTIQYHLLHALNSIAAHSSA--S 506 (844)
Q Consensus 466 ------------------------------------~~l~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~--~ 506 (844)
..+.+.++++.|+.+|..+ ++.+++.|+++|.|||...+. .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 2345667899999999764 689999999999999986532 1
Q ss_pred HH-HHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCC-----HHHHHHHH
Q 003146 507 NV-RRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTS-----ENEKAAAV 580 (844)
Q Consensus 507 ~~-~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~-----~~~~~~a~ 580 (844)
.+ +..+.+.|+++.|+++|.+++.+++..|+++|++++.+.. +...+..+++++|+++|...+. +++...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 33 4556689999999999999999999999999999987643 3344556789999999996532 46778899
Q ss_pred HHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcC-CCCCCCCchhHHHHHHHHHHhccC
Q 003146 581 GILSNLPVSNKKATELLKKTNLLPSLISAATSS-TITKTHSTPWLVESVAGILIRFTD 637 (844)
Q Consensus 581 ~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~-~~~~~~~~~~l~e~a~~aL~~l~~ 637 (844)
++|.++...+++....+.+.|+++.|+.++.++ + ..+.+.|.++|.++..
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~-------~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS-------PKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHc
Confidence 999999888889999999999999999999887 3 2578899999998875
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.5e-32 Score=315.03 Aligned_cols=402 Identities=17% Similarity=0.213 Sum_probs=336.9
Q ss_pred cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc--ccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-
Q 003146 389 DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA--ENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE- 465 (844)
Q Consensus 389 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~--~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~- 465 (844)
...++.++..+.++++..+..|+.++++|.+.. .....+++.|+||.|+.+|...+. ..++..|+++|+|++.+.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~--~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC--SPIQFESAWALTNIASGTS 152 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC--HHHHHHHHHHHHHHHcCCH
Confidence 356899999999999999999999999976543 346889999999999999976653 458899999999999874
Q ss_pred ---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCH-----HHHHHHH
Q 003146 466 ---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNA-----NIRAAAL 537 (844)
Q Consensus 466 ---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~v~~~A~ 537 (844)
..+...|+++.|+.++.++++.+++.|+++|.+|+.++ +.++..+.+.|++++|+.++..++. .+.+.++
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 46778899999999999999999999999999999876 7899999999999999999987653 4678899
Q ss_pred HHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCC
Q 003146 538 NLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITK 617 (844)
Q Consensus 538 ~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~ 617 (844)
++|.+++.+......-....+.++.|+++|. +++++++..++++|++++.......+.+.+.|+++.|+.++.+++.
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-- 307 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL-- 307 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH--
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhc-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh--
Confidence 9999998754311111112347788999887 5788999999999999999888888899999999999999987653
Q ss_pred CCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecC
Q 003146 618 THSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVP 697 (844)
Q Consensus 618 ~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~ 697 (844)
.++..++.+|.+++.. ++.....+.+.|++|.|+.+|+++++.+|+.|+++|+|++.+.....
T Consensus 308 -----~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~----------- 370 (529)
T 3tpo_A 308 -----PIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI----------- 370 (529)
T ss_dssp -----HHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH-----------
T ss_pred -----hHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH-----------
Confidence 5788999999999875 44556678899999999999999999999999999999997665533
Q ss_pred CCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhh
Q 003146 698 PSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLE 777 (844)
Q Consensus 698 ~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~ 777 (844)
..+++.|++++|+.+|.+++.+++..|++||+|++..+.. +....+.+.|+|++|+++|+
T Consensus 371 -------------------~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 371 -------------------QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp -------------------HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHGGG
T ss_pred -------------------HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCcCHHHHHHHhc
Confidence 6677899999999999999999999999999999976543 35677899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhh-------hHhhccccc-hhHHhhhhcCCCCchHHHHHHHHHH
Q 003146 778 SGNAKAQEKALWILERIFRIEEH-------RVKYGESAQ-VVLIDLAQNGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 778 ~~~~~~~~~A~~~L~~i~~~~~~-------~~~~~~~a~-~~Lv~ll~~~~~~~~~~aa~~L~~l 834 (844)
++++.++..++++|.+|++..+. ...+....+ ..|.+|..+++.++++.|.++|..-
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999976432 122222223 4566677789999999999998753
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=311.44 Aligned_cols=357 Identities=20% Similarity=0.211 Sum_probs=292.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCC------------chHHHHHHHHHHHh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSK------------PYNRLIMIQILRNL 252 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~------------~~~~~~a~~~L~~L 252 (844)
++.++..+.+.+.. +..+.+..+..+|+ .+..+.+.|++|.++++|..++ ++.+..++++|.||
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~-~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQD-SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTT-HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCc-HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 56677777666554 35677888888886 3567888999999999998532 59999999999999
Q ss_pred HhcChhhHHHHhcCCcH----------HHHHHHhcCC---HH-----HH-------HHHHHHHHHccCCChhHHHHhhhh
Q 003146 253 ASENADYKEKMANVGSL----------SALVKSLTRD---VE-----EQ-------REAVGLLLDLSDLPAVWRRIGRIQ 307 (844)
Q Consensus 253 ~~~~~~~~~~i~~~g~i----------~~Lv~~L~~~---~~-----~~-------~~A~~~L~~Ls~~~~~~~~i~~~~ 307 (844)
+...++......+.|.+ +.+++.+.+. .+ ++ .+|+++|.+++.++++|+.+.+ .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~-~ 188 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE-L 188 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHH-T
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-C
Confidence 99988877666666655 5566777652 12 22 3899999999999999999998 9
Q ss_pred CcHHHHHHhhcC-----------CChHHHHHHHHHHHHhccCCc-cHHHHHH-cCChHHHHHHhccCCHHHHHHHHHHHH
Q 003146 308 GCIVMLVSMLSG-----------NDPVASHDAGKLLNALSSNTQ-NALHMAE-AGYFKPLVQYLKEGSDMSKILMATALS 374 (844)
Q Consensus 308 g~i~~Lv~lL~s-----------~d~~~~~~A~~~L~nLs~~~~-~~~~i~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~ 374 (844)
|++++|+.+|.. .++.++++|+++|.||+.+++ ++..+.. .|++++|+++|++++++++..++++|.
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 268 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999952 346789999999999998765 6666654 566999999999999999999999999
Q ss_pred HhhcC--chhhhhhhhcCchHHHHHHh-hcCCHHHHHHHHHHHHHhhc-CcccHHHHH-HcCChHHHHHHhhccCCc-ch
Q 003146 375 RMELT--DQSRASLGEDGAIEPLVRMF-RVGKLEAKLSALNALQNLSL-LAENIQRLV-ISGIVSPLLQLLFSVTSV-LM 448 (844)
Q Consensus 375 ~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~~~~~i~-~~g~v~~Lv~lL~~~~~~-~~ 448 (844)
+|+.. +++|..|.+.|+||+|+++| +++++.+++.|+.+|+||+. +++++..++ ..|++|+|+.+|.+..+. ..
T Consensus 269 nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~ 348 (458)
T 3nmz_A 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348 (458)
T ss_dssp HHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTT
T ss_pred HHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchH
Confidence 99985 47899999999999999974 66788999999999999999 678888888 799999999999876532 11
Q ss_pred hhHHHHHHHHHHHhc----Ch---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHH
Q 003146 449 TLREPASAILARIAQ----SE---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLL 521 (844)
Q Consensus 449 ~l~~~a~~~L~~l~~----~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~L 521 (844)
.+++.|+++|+||+. ++ ..+.+.|+++.|+.+|++++..++++|+++|.+|+... .+.+..+.+.|++++|
T Consensus 349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~--~~~~~~i~~~G~I~~L 426 (458)
T 3nmz_A 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN--PKDQEALWDMGAVSML 426 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC--HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHH
Confidence 478999999999995 43 45677899999999999999999999999999999654 7889999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhhhhh
Q 003146 522 LPFLMETNANIRAAALNLVCTLSKDVY 548 (844)
Q Consensus 522 v~ll~~~~~~v~~~A~~~L~~ls~~~~ 548 (844)
+.++.++++++++.|+++|++|+.+.+
T Consensus 427 v~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 427 KNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999987654
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.2e-31 Score=298.71 Aligned_cols=406 Identities=16% Similarity=0.192 Sum_probs=332.9
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhcc--CCccHHHHHHc-CChHHHHHHhccC-CHHHHHHHHHHHHHhhcC-chhh
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSS--NTQNALHMAEA-GYFKPLVQYLKEG-SDMSKILMATALSRMELT-DQSR 383 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~~-~~~~ 383 (844)
.++.|+..|+++|+.++..|+..|.++.. .+.....+++. |+++.|+++|+++ ++.++..++++|.+++.. ++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 48999999999999999999999999753 33444566777 9999999999998 789999999999999985 4666
Q ss_pred hhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHh
Q 003146 384 ASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIA 462 (844)
Q Consensus 384 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~ 462 (844)
..+.+.|++|.|+.+|+++++.+++.|+++|+|++.+. +++..+++.|+++.|+.++.++. ...++..++++|.+++
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC--CHHHHHHHHHHHHHHh
Confidence 67778999999999999999999999999999999874 57788889999999999998533 2468899999999999
Q ss_pred cCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 463 QSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 463 ~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
.+. ......++++.|+.++.++++.++..++++|.+++.+. ......+...|+++.|+.++.+++++++..|++
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 653 11222689999999999999999999999999999875 566777888999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCC
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKT 618 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~ 618 (844)
+|.+++.+.+.. .+.+.+.|+++.|+.++.+++
T Consensus 257 ~L~~l~~~~~~~-------------------------------------------~~~~~~~~~l~~L~~ll~~~~---- 289 (450)
T 2jdq_A 257 AVGNIVTGDDIQ-------------------------------------------TQVILNCSALQSLLHLLSSPK---- 289 (450)
T ss_dssp HHHHHTTSCHHH-------------------------------------------HHHHHTTTHHHHHHHHTTCSS----
T ss_pred HHHHHhhCChHH-------------------------------------------HHHHHHCccHHHHHHHHcCCC----
Confidence 999987643321 112234556667777765543
Q ss_pred CCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhc-CccccccccccceecC
Q 003146 619 HSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQN-SLSLRKSKISKWLCVP 697 (844)
Q Consensus 619 ~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~-~~~~~~~~~~~~~~~~ 697 (844)
..+++.++++|.+++.. +++....+.+.|++|.|+++|.++++.+|..|+++|+|++.+ ++.
T Consensus 290 ---~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~------------- 352 (450)
T 2jdq_A 290 ---ESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE------------- 352 (450)
T ss_dssp ---HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH-------------
T ss_pred ---HHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH-------------
Confidence 24666777777777753 333344567789999999999999999999999999999865 222
Q ss_pred CCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccc---------hhhhHHHHhcCC
Q 003146 698 PSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETW---------ESGSNYLAKLSG 768 (844)
Q Consensus 698 ~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~---------~~~~~~i~~~g~ 768 (844)
....+++.|++++|+.+|.+++++++..|+.||.++...... ......+.+.||
T Consensus 353 -----------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~ 415 (450)
T 2jdq_A 353 -----------------QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYG 415 (450)
T ss_dssp -----------------HHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHC
T ss_pred -----------------HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCc
Confidence 124566889999999999999999999999999999965421 235678899999
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhh
Q 003146 769 TQAIIKVLESGNAKAQEKALWILERIFRIEE 799 (844)
Q Consensus 769 i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~ 799 (844)
++.|..+++++++.++++|..+|+++|..++
T Consensus 416 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 416 LDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999999999999999999997554
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.1e-32 Score=300.90 Aligned_cols=366 Identities=20% Similarity=0.255 Sum_probs=289.5
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccC------------CHHHHHHHHHHHH
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEG------------SDMSKILMATALS 374 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~------------~~~~~~~aa~~L~ 374 (844)
...++.|+..+.+.|+. .....|..++.+++.+..+.+.|++|.||++|+.. +++.+..|+++|.
T Consensus 31 ~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 31 VEMVYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp --------------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 34578888888887776 26678888999888889999999999999999963 3688999999999
Q ss_pred HhhcCc-hhhhhhhhcCch----------HHHHHHhhcCC--HH-----HHH-------HHHHHHHHhhcCcccHHHHHH
Q 003146 375 RMELTD-QSRASLGEDGAI----------EPLVRMFRVGK--LE-----AKL-------SALNALQNLSLLAENIQRLVI 429 (844)
Q Consensus 375 ~Ls~~~-~~~~~i~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~A~~aL~nLs~~~~~~~~i~~ 429 (844)
|++... +......+.|++ +.+++++.+.. .+ +++ .|+++|.|++.++++|..+++
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~ 187 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE 187 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 998854 555555666776 55666676542 11 334 899999999999999999999
Q ss_pred cCChHHHHHHhhcc--------CCcchhhHHHHHHHHHHHhcChh----hh-cccchHHHHHHhhccCChHHHHHHHHHH
Q 003146 430 SGIVSPLLQLLFSV--------TSVLMTLREPASAILARIAQSES----IL-VNKDVAQQMLSLLNLCSPTIQYHLLHAL 496 (844)
Q Consensus 430 ~g~v~~Lv~lL~~~--------~~~~~~l~~~a~~~L~~l~~~~~----~l-~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 496 (844)
.|++++|+.+|..+ +.....+++.|+++|.||+.+.. .+ ...|+++.|+.+|.++++++++.|+++|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999631 11224578999999999998752 33 3556799999999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHhCCcHHHHHHH-hccCCHHHHHHHHHHHHHhhhhhhHHHHHHh-chhhHHHHHHHhcCCCCH-
Q 003146 497 NSIAAHSSASNVRRKMKENGAIHLLLPF-LMETNANIRAAALNLVCTLSKDVYEELAEQL-GDKYLNILVDITLSSTSE- 573 (844)
Q Consensus 497 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l-~~~~l~~Lv~lL~~~~~~- 573 (844)
.+|+... ...++..+.+.|+++.|+++ +.++++.+++.|+.+|++|+.+.++...... ..++++.|+++|....+.
T Consensus 268 ~nLs~~~-~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 268 RNLSWRA-DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHTSSC-CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHhcCC-CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 9998752 26789999999999999997 4667889999999999999975543333333 567999999999865433
Q ss_pred --HHHHHHHHHHhcCCC---CCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHH
Q 003146 574 --NEKAAAVGILSNLPV---SNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSV 648 (844)
Q Consensus 574 --~~~~~a~~~L~~L~~---~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~ 648 (844)
+++..|+++|.||+. .+++.++.+.+.|+++.|+.+|++++. .++++|+++|.+++.. +++.+..+.
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~-------~v~~~A~~aL~nLa~~-~~~~~~~i~ 418 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL-------TIVSNACGTLWNLSAR-NPKDQEALW 418 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCH-------HHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCCh-------HHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 578889999999985 688889999999999999999987653 5889999999999963 567778899
Q ss_pred HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCcc
Q 003146 649 QHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLS 684 (844)
Q Consensus 649 ~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~ 684 (844)
+.|++|.|+++|+++++.+++.|+++|.||+.+.+.
T Consensus 419 ~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999999999999999999999999999999976543
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.4e-31 Score=304.65 Aligned_cols=402 Identities=17% Similarity=0.172 Sum_probs=345.6
Q ss_pred CcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-C-hhHHHHhhhhCcHHHHHHhhcCCC-hHHHHHHHHHHHHhccC-Ccc
Q 003146 267 GSLSALVKSLTR-DVEEQREAVGLLLDLSDL-P-AVWRRIGRIQGCIVMLVSMLSGND-PVASHDAGKLLNALSSN-TQN 341 (844)
Q Consensus 267 g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~lL~s~d-~~~~~~A~~~L~nLs~~-~~~ 341 (844)
..++.++..|.+ +.+.+..|++.|+++... + .....+.. .|++|.|+.+|.+++ +.++..|+++|.+++.. +++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH-TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 468999999987 567899999999998554 3 56677776 999999999999876 99999999999999985 677
Q ss_pred HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHh-hcCCHHHHHHHHHHHHHhhc
Q 003146 342 ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMF-RVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~ 419 (844)
+..+++.|++++|+.+|.+++..++..++++|++++.. +.++..+.+.|++++|+.+| .+.++.++..|+++|+||+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 88899999999999999999999999999999999986 46788888999999999999 67788999999999999998
Q ss_pred CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHH
Q 003146 420 LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHA 495 (844)
Q Consensus 420 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 495 (844)
+..+.......|++|.|+.+|.+.+ ..++..++++|.+++... ..+...|+++.|+.+|..+++.++..|+++
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSND---EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence 8555455566899999999997665 458899999999999875 245567899999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC-CHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHH
Q 003146 496 LNSIAAHSSASNVRRKMKENGAIHLLLPFLMET-NANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSEN 574 (844)
Q Consensus 496 L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~ 574 (844)
|.+++.+. ......+.+.|+++.|+.+|.++ ++.++..|+++|.+++...+..+...+..+.++.|+.+|.+ ++..
T Consensus 310 L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~ 386 (528)
T 4b8j_A 310 VGNIVTGD--DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT-AEFD 386 (528)
T ss_dssp HHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH-SCHH
T ss_pred HHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc-CCHH
Confidence 99999875 67777888999999999999999 89999999999999987655555555556789999999985 5889
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCH----------HH
Q 003146 575 EKAAAVGILSNLPVS-NKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDK----------KL 643 (844)
Q Consensus 575 ~~~~a~~~L~~L~~~-~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~----------~~ 643 (844)
++..|+++|++++.. ++.....+.+.|+++.|+.++.+++. .++..++.+|.++....+. .+
T Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~-------~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 459 (528)
T 4b8j_A 387 IKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI-------RIVTVCLEGLENILKVGETDKTLAAGDVNVF 459 (528)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH-------HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHhhhcccccccHH
Confidence 999999999999875 67888899999999999999987553 5788999999988753211 24
Q ss_pred HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 003146 644 QQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNS 682 (844)
Q Consensus 644 ~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~ 682 (844)
...+.+.|+++.|..+.++.+++++..|...+.++....
T Consensus 460 ~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 460 SQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 567888999999999999999999999999999887543
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.8e-30 Score=297.16 Aligned_cols=414 Identities=16% Similarity=0.182 Sum_probs=336.1
Q ss_pred CCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC--ChhHHHHhhhhCcHHHHHHhhcCC-ChHHHHHHHHHHHHhccC-Cc
Q 003146 266 VGSLSALVKSLTR-DVEEQREAVGLLLDLSDL--PAVWRRIGRIQGCIVMLVSMLSGN-DPVASHDAGKLLNALSSN-TQ 340 (844)
Q Consensus 266 ~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~s~-d~~~~~~A~~~L~nLs~~-~~ 340 (844)
.+.++.++..|.+ +.+.+..|+..|+++... ......+.. .|++|.|+.+|.++ ++.++..|+++|.+++.. ++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~-~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQ-AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH-TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHH-CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4579999999988 567899999999998553 345566776 89999999999987 899999999999999975 45
Q ss_pred cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 003146 341 NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 341 ~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
++..+++.|+++.|+.+|.+++..++..|+++|++++.. ++++..+...|++++|+.++.+.++.++..|+++|+||+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 678888999999999999999999999999999999986 4788888889999999999999999999999999999998
Q ss_pred Cc-ccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHH
Q 003146 420 LA-ENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLH 494 (844)
Q Consensus 420 ~~-~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~ 494 (844)
+. .........|++|.|+.+|.+.+ ..++..++++|.+|+... ..+...++++.|+.++.++++.++..|++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMD---TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCC---HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCC---HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHH
Confidence 75 55556667899999999998664 468899999999999864 34455689999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHH
Q 003146 495 ALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSEN 574 (844)
Q Consensus 495 ~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~ 574 (844)
+|.+++.+. ......+.+.|+++.|+.+|.++++.++..|+++|.+++...
T Consensus 322 ~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~--------------------------- 372 (530)
T 1wa5_B 322 AVGNIVTGN--DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN--------------------------- 372 (530)
T ss_dssp HHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---------------------------
T ss_pred HHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---------------------------
Confidence 999999875 566667777888888888888887788888877777765432
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCH--HHHHHHHHcCC
Q 003146 575 EKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDK--KLQQYSVQHGV 652 (844)
Q Consensus 575 ~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~--~~~~~i~~~g~ 652 (844)
+...+.+.+.|+++.|+.++.+++. .++..++++|.+++...++ +....+.+.|+
T Consensus 373 ----------------~~~~~~~~~~~~l~~L~~lL~~~~~-------~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 373 ----------------TEQIQAVIDANLIPPLVKLLEVAEY-------KTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp ----------------HHHHHHHHHTTCHHHHHHHHHHSCH-------HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred ----------------HHHHHHHHHCCCHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 2223334556788888888876542 5778888999888765444 55667788999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhh
Q 003146 653 IRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVL 732 (844)
Q Consensus 653 i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL 732 (844)
+|.|+.++.++++.++..|..+|.++....+..... ..+ ........+.+.|+++.|..++
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~------------------~~~-~~~~~~~~l~~~g~~~~L~~L~ 490 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA------------------RGL-NINENADFIEKAGGMEKIFNCQ 490 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH------------------HTC-SSCHHHHHHHHTTHHHHHHGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc------------------ccc-cccHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999999998754331000 000 0000113466889999999999
Q ss_pred cCCChhhHHHHHHHHHhhhccc
Q 003146 733 EGKEREADETVLGALASLLQDE 754 (844)
Q Consensus 733 ~~~~~~v~~~A~~AL~~L~~~~ 754 (844)
.++++++++.|..+|.++..++
T Consensus 491 ~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 491 QNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp GCSCHHHHHHHHHHHHHHSSSC
T ss_pred cCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999999999988654
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=7.3e-29 Score=281.59 Aligned_cols=407 Identities=16% Similarity=0.156 Sum_probs=330.9
Q ss_pred ChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhc-ChhhHHHHhcC-CcHHHHHHHhcCC--HHHHHHHHHHHHH
Q 003146 217 DSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASE-NADYKEKMANV-GSLSALVKSLTRD--VEEQREAVGLLLD 292 (844)
Q Consensus 217 ~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~-~~~~~~~i~~~-g~i~~Lv~~L~~~--~~~~~~A~~~L~~ 292 (844)
+.+|....-.+|.+++.|.++++.++..++.+|+.++.. +......+... |.++.|++.|.++ .+.+..|++.|.+
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 346775444789999999999999999999999998752 22233445565 9999999999874 5789999999999
Q ss_pred ccCC-ChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC-ccHHHHHHcCChHHHHHHhcc-CCHHHHHHH
Q 003146 293 LSDL-PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT-QNALHMAEAGYFKPLVQYLKE-GSDMSKILM 369 (844)
Q Consensus 293 Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a 369 (844)
++.. ++....+.. .|++|.|+.+|+++++.+++.|+++|.+++.+. .++..+.+.|+++.|+++|.+ .+..++..+
T Consensus 92 l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a 170 (450)
T 2jdq_A 92 IASGNSLQTRIVIQ-AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA 170 (450)
T ss_dssp HHSSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHH
T ss_pred HhcCCHHHHHHHHh-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHH
Confidence 9885 456666766 999999999999999999999999999999764 578888899999999999996 678999999
Q ss_pred HHHHHHhhcCc--hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHhhccCCc
Q 003146 370 ATALSRMELTD--QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLLFSVTSV 446 (844)
Q Consensus 370 a~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~ 446 (844)
+++|++++... ..+..+. .+++|.|+.++.++++.++..|+++|.+|+.+. ++...+++.|++|.|+.+|.+.+
T Consensus 171 ~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-- 247 (450)
T 2jdq_A 171 VWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-- 247 (450)
T ss_dssp HHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--
T ss_pred HHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--
Confidence 99999999754 3333333 789999999999999999999999999999864 56777888999999999998554
Q ss_pred chhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHH
Q 003146 447 LMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLL 522 (844)
Q Consensus 447 ~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv 522 (844)
..++..++++|.+++.+. ..+...|+++.|+.++.++++.+|..|+++|.+++.+. ....+.+.+.|+++.|+
T Consensus 248 -~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~ 324 (450)
T 2jdq_A 248 -YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN--RAQIQTVIDANIFPALI 324 (450)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHH
T ss_pred -hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHH
Confidence 468899999999999874 23456689999999999999999999999999999864 66677788899999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhhh-hHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH----------
Q 003146 523 PFLMETNANIRAAALNLVCTLSKDV-YEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNK---------- 591 (844)
Q Consensus 523 ~ll~~~~~~v~~~A~~~L~~ls~~~-~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~---------- 591 (844)
.++.++++++|..|+++|.+++.+. ++.+...+..+.++.|+.++.+ ++.+++..++.+|.++....+
T Consensus 325 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 403 (450)
T 2jdq_A 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGI 403 (450)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccch
Confidence 9999999999999999999998763 3444444556689999999985 578899999999998865332
Q ss_pred -HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCC
Q 003146 592 -KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDP 638 (844)
Q Consensus 592 -~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~ 638 (844)
.....+.+.|+++.|..++.+++. .+.+.+..+|.++-..
T Consensus 404 ~~~~~~l~~~g~~~~l~~l~~~~~~-------~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 404 NPYCALIEEAYGLDKIEFLQSHENQ-------EIYQKAFDLIEHYFGT 444 (450)
T ss_dssp CHHHHHHHHHHCHHHHHHHHCHHHH-------HHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHcCcHHHHHHHHcCCCH-------HHHHHHHHHHHHHCCc
Confidence 234677888999999988866542 4777888888876643
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=2.9e-28 Score=264.15 Aligned_cols=266 Identities=22% Similarity=0.247 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC-----------CChHHHHHHHHHHHHhccCCc-cHHHHHH-
Q 003146 281 EEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG-----------NDPVASHDAGKLLNALSSNTQ-NALHMAE- 347 (844)
Q Consensus 281 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-----------~d~~~~~~A~~~L~nLs~~~~-~~~~i~~- 347 (844)
+....|+++|.+++.++++|+.|.+ .|++++|+.+|.+ .++.++++|+++|.||+.+++ ++..+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3466899999999999999999998 9999999999952 246789999999999998665 7777765
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhhcC--chhhhhhhhcCchHHHHHHh-hcCCHHHHHHHHHHHHHhhc-Cccc
Q 003146 348 AGYFKPLVQYLKEGSDMSKILMATALSRMELT--DQSRASLGEDGAIEPLVRMF-RVGKLEAKLSALNALQNLSL-LAEN 423 (844)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~~ 423 (844)
.|++++|+++|++++++++..++++|.+|+.. +++|..|.+.|+||+|+++| +++++.+++.|+.+|+||+. ++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999985 47899999999999999974 66788999999999999999 5688
Q ss_pred HHHHH-HcCChHHHHHHhhccCCc-chhhHHHHHHHHHHHhc----Ch---hhhcccchHHHHHHhhccCChHHHHHHHH
Q 003146 424 IQRLV-ISGIVSPLLQLLFSVTSV-LMTLREPASAILARIAQ----SE---SILVNKDVAQQMLSLLNLCSPTIQYHLLH 494 (844)
Q Consensus 424 ~~~i~-~~g~v~~Lv~lL~~~~~~-~~~l~~~a~~~L~~l~~----~~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~ 494 (844)
+..++ ..|++|+|+.+|.++++. ...+++.|+++|+||+. ++ ..+.+.|+++.|+.+|++++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 799999999999876532 12478999999999996 43 45677899999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH
Q 003146 495 ALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 495 ~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
+|.+|+... .+.++.+.+.|+++.|+.++.++++++++.|+++|++|+.+.+.
T Consensus 286 aL~nLa~~~--~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARN--PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSC--HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCC--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999654 78899999999999999999999999999999999999987653
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=4.2e-28 Score=262.82 Aligned_cols=263 Identities=19% Similarity=0.187 Sum_probs=230.0
Q ss_pred CchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC------------CHHHHHHHHHHHHHccCCCh-hHHHHh
Q 003146 238 KPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR------------DVEEQREAVGLLLDLSDLPA-VWRRIG 304 (844)
Q Consensus 238 ~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~------------~~~~~~~A~~~L~~Ls~~~~-~~~~i~ 304 (844)
..+....|+++|.+++. +++++..+.+.|+++.|+.+|.. +.+.++.|+++|.+|+..+. ++..+.
T Consensus 45 ~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566689999999975 47899999999999999999952 13478899999999998765 666665
Q ss_pred hhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC--CccHHHHHHcCChHHHHHHh-ccCCHHHHHHHHHHHHHhhc-Cc
Q 003146 305 RIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN--TQNALHMAEAGYFKPLVQYL-KEGSDMSKILMATALSRMEL-TD 380 (844)
Q Consensus 305 ~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~Ls~-~~ 380 (844)
...|+||.|+.+|+++++++++.|+++|.||+.. +++|..+++.|++++|+++| ++++..++..++.+|++|+. ++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 5467799999999999999999999999999974 56899999999999999975 56778899999999999998 66
Q ss_pred hhhhhhh-hcCchHHHHHHhhcCCH----HHHHHHHHHHHHhhc----CcccHHHHHHcCChHHHHHHhhccCCcchhhH
Q 003146 381 QSRASLG-EDGAIEPLVRMFRVGKL----EAKLSALNALQNLSL----LAENIQRLVISGIVSPLLQLLFSVTSVLMTLR 451 (844)
Q Consensus 381 ~~~~~i~-~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~----~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~ 451 (844)
++|..|. ..|+||+|+.+|+++++ .+++.|+++|+||+. +++++..+++.|++|+|+.+|.+++ ..++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~ 280 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS---LTIV 280 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC---HHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC---hHHH
Confidence 8888888 69999999999998765 489999999999996 7889999999999999999998765 4588
Q ss_pred HHHHHHHHHHhcC-h---hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC
Q 003146 452 EPASAILARIAQS-E---SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS 504 (844)
Q Consensus 452 ~~a~~~L~~l~~~-~---~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 504 (844)
+.|+++|+|++.. + ..+.+.|+++.|+++++++++.+++.|+++|.+|+.+.+
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999954 3 456778999999999999999999999999999998864
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.7e-27 Score=267.58 Aligned_cols=465 Identities=14% Similarity=0.111 Sum_probs=325.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMA 264 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 264 (844)
.+.+...+.+.....+..++-.+...+......|+|+.+ +.+|.|.+.+++ ..++..|+.+|..+..........+.
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~-~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~ 333 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE-NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK 333 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH-HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH-hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH
Confidence 345555665555554545544444444344455899955 578999999976 57888888888888543322211121
Q ss_pred cCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccH
Q 003146 265 NVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNA 342 (844)
Q Consensus 265 ~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~ 342 (844)
+ ..+.++++|.+ +.+.++.|+..|.-++..++++..+..+.|+++.|+.++++ ++..+...++.+|.||+.+.++.
T Consensus 334 ~--La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 334 Q--LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp H--HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred H--HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 1 44556777776 45679999999999999999999999989999999999985 78889999999999999765542
Q ss_pred HHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc
Q 003146 343 LHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE 422 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 422 (844)
... ...+..|-++.+...++...........-...+.++..+.+.|+||+|+.+++++++.+++.|+++|.||+.+++
T Consensus 412 ~~e--~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~ 489 (778)
T 3opb_A 412 XXX--XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN 489 (778)
T ss_dssp CCC--CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG
T ss_pred chh--hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 111 112333333332221111111110111111112267788899999999999999999999999999999999999
Q ss_pred cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--hhhcc----cchHHHHHHhhcc--CCh--------
Q 003146 423 NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--SILVN----KDVAQQMLSLLNL--CSP-------- 486 (844)
Q Consensus 423 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--~~l~~----~~~i~~Lv~lL~~--~~~-------- 486 (844)
++..+++.|++++|+.++.+++......++.|+.+|+++..+. ..+.. .+++++|+++|.. +..
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 9999999999999999998876422236899999999998542 33221 3899999999983 211
Q ss_pred ----HHHHHHHHHHHHhhcCCCh--hHHHHHHHhC-CcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH-HHhc--
Q 003146 487 ----TIQYHLLHALNSIAAHSSA--SNVRRKMKEN-GAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA-EQLG-- 556 (844)
Q Consensus 487 ----~~~~~a~~~L~~L~~~~~~--~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~-~~l~-- 556 (844)
.-+..|+.+|.||+..++. ++.+..+... |+++.|..++.+++..+|+.|+++++||+.+.. .+. ....
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~ 648 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLE 648 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhc
Confidence 1377999999999998642 4567777775 999999999999999999999999999986433 221 2211
Q ss_pred -hh---hHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhC-CChHHHHHHhhcCCCCCCCCchhHHHHHHHH
Q 003146 557 -DK---YLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKT-NLLPSLISAATSSTITKTHSTPWLVESVAGI 631 (844)
Q Consensus 557 -~~---~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~-~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~a 631 (844)
+. .++.||.++. +++.+++.+|+++|++++..++.+.+.+.+. ++++.++.++++... ..+++..++.+
T Consensus 649 ~~~~~~rL~lLV~Ll~-s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~-----~~~l~~R~~~~ 722 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQ-LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID-----DIELRQRLLML 722 (778)
T ss_dssp SHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT-----CHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCC-----CHHHHHHHHHH
Confidence 11 4888999996 5889999999999999987788888888887 799999999988321 23688899999
Q ss_pred HHhccC----CCCHHHHHHHH-HcCCHHHHHHHhccC
Q 003146 632 LIRFTD----PSDKKLQQYSV-QHGVIRLLVKLLSSE 663 (844)
Q Consensus 632 L~~l~~----~~~~~~~~~i~-~~g~i~~Lv~lL~~~ 663 (844)
+.|++. ..+.+....+. ....+..|.++++++
T Consensus 723 l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 723 FFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 999885 12211111222 344555666666554
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-24 Score=250.42 Aligned_cols=385 Identities=16% Similarity=0.160 Sum_probs=291.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMA 264 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 264 (844)
++-|...+++ +.....|+-.+..+...+.....-+. ...+.+.+.|..++.+.+..++..|..+..++ +.|+.++
T Consensus 298 ~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~ 372 (778)
T 3opb_A 298 LQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIR 372 (778)
T ss_dssp HHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHH
Confidence 4445555543 23344455566666655432211111 15677778887776667899999999996544 5565555
Q ss_pred c-CCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCCh---------------------------------------hHHH
Q 003146 265 N-VGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPA---------------------------------------VWRR 302 (844)
Q Consensus 265 ~-~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~---------------------------------------~~~~ 302 (844)
. .|.+..|+.++.. +......++..|.|++...+ ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 4 5669999999985 45567778888888876421 3445
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHH---HHHHHHHHHHHhhcC
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDM---SKILMATALSRMELT 379 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~---~~~~aa~~L~~Ls~~ 379 (844)
+.+ .|+||.|+.+++++++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. .+..|+.+|.++..+
T Consensus 453 l~e-aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis 531 (778)
T 3opb_A 453 ILR-TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF 531 (778)
T ss_dssp TTT-TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred HHH-CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 555 9999999999999999999999999999999999999999999999999999998655 789999999999987
Q ss_pred chhhhhhhh---cCchHHHHHHhhc--CCH------------HHHHHHHHHHHHhhcCcc-----cHHHHHHc-CChHHH
Q 003146 380 DQSRASLGE---DGAIEPLVRMFRV--GKL------------EAKLSALNALQNLSLLAE-----NIQRLVIS-GIVSPL 436 (844)
Q Consensus 380 ~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~A~~aL~nLs~~~~-----~~~~i~~~-g~v~~L 436 (844)
.+....+.. .|+||+|+.+|.. +.. ..+..|+.||.||++.++ .+..+++. |++|.|
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 666555532 4999999999983 211 238899999999999874 37788885 999999
Q ss_pred HHHhhccCCcchhhHHHHHHHHHHHhcChhh----hccc------chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChh
Q 003146 437 LQLLFSVTSVLMTLREPASAILARIAQSESI----LVNK------DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSAS 506 (844)
Q Consensus 437 v~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~----l~~~------~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 506 (844)
..+|.+++ ..++..|+++++||+.++.. +... +.++.|+.+++.+++++|.+|.++|.+++... +
T Consensus 612 ~~LL~s~n---~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~--~ 686 (778)
T 3opb_A 612 ENLMLDEN---VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI--P 686 (778)
T ss_dssp HHGGGCSS---HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--H
T ss_pred HHHHhCCC---HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--h
Confidence 99998765 45899999999999998743 2211 13889999999999999999999999997543 5
Q ss_pred HHHHHHHhC-CcHHHHHHHhcc--CCHHHHHHHHHHHHHhhh----hhh-HHHHHHh-chhhHHHHHHHhcCCCCHHHHH
Q 003146 507 NVRRKMKEN-GAIHLLLPFLME--TNANIRAAALNLVCTLSK----DVY-EELAEQL-GDKYLNILVDITLSSTSENEKA 577 (844)
Q Consensus 507 ~~~~~i~~~-g~i~~Lv~ll~~--~~~~v~~~A~~~L~~ls~----~~~-~~i~~~l-~~~~l~~Lv~lL~~~~~~~~~~ 577 (844)
.+++.+.+. ++++.++.++.+ ++++++..++.+++||+. +.+ +.+..+. ..+....|.++++.++++++..
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~ 766 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFS 766 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTT
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHH
Confidence 666666665 899999999999 899999999999999986 222 3444555 4446778888888765544444
Q ss_pred HHH
Q 003146 578 AAV 580 (844)
Q Consensus 578 ~a~ 580 (844)
.|.
T Consensus 767 ~~~ 769 (778)
T 3opb_A 767 AAI 769 (778)
T ss_dssp SHH
T ss_pred HHH
Confidence 333
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=3.4e-23 Score=215.18 Aligned_cols=236 Identities=22% Similarity=0.306 Sum_probs=216.8
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc-cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhh
Q 003146 308 GCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ-NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRAS 385 (844)
Q Consensus 308 g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~ 385 (844)
|+||.|+.+|.++++.++..|+++|.+++..+. ++..+++.|+++.|+++|++++..++..++++|++++.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 689999999999999999999999999997654 899999999999999999999999999999999999997 688999
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhh-cCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLS-LLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS 464 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~ 464 (844)
+.+.|+++.|+.+|+++++.++..|+++|.||+ .+++++..+++.|+++.|+.+|.+.+ ..++..++++|++++..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIASG 158 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999 56778899999999999999998765 45889999999999986
Q ss_pred h----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHH
Q 003146 465 E----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLV 540 (844)
Q Consensus 465 ~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L 540 (844)
. ..+.+.|+++.|+.++.++++.++..++++|.+++... +..+..+.+.|+++.|+.++.+++++++..|+++|
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4 35566899999999999999999999999999999864 77888899999999999999999999999999999
Q ss_pred HHhhhhhh
Q 003146 541 CTLSKDVY 548 (844)
Q Consensus 541 ~~ls~~~~ 548 (844)
.++....+
T Consensus 237 ~~l~~~~~ 244 (252)
T 4hxt_A 237 ENIKSGGW 244 (252)
T ss_dssp HHHHHTCB
T ss_pred HHHHcCCC
Confidence 99986544
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=5.7e-23 Score=213.82 Aligned_cols=234 Identities=21% Similarity=0.238 Sum_probs=213.1
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhc-cCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhc-Cchhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALS-SNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMEL-TDQSRA 384 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~~~ 384 (844)
....+.++.+|+++|++++..|+++|.++. .+++++..+++.|+++.|+++|+++++.++..++++|.+++. +++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 556899999999999999999999997754 566778899999999999999999999999999999999998 568899
Q ss_pred hhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH-HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 385 SLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI-QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 385 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
.+.+.|++|.|+.+|+++++.+++.|+++|+||+.+++++ ..+++.|++|.|+.+|.+++ ..++..++++|++++.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998888 88899999999999998764 4688999999999998
Q ss_pred Ch----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHH
Q 003146 464 SE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNL 539 (844)
Q Consensus 464 ~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~ 539 (844)
+. ..+...|+++.|+.++.++++.+++.|+++|.+++... +..+..+.+.|+++.|+.++.+++++++..|+++
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 64 34566799999999999999999999999999999765 7788889999999999999999999999999999
Q ss_pred HHHhhh
Q 003146 540 VCTLSK 545 (844)
Q Consensus 540 L~~ls~ 545 (844)
|.+++.
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 999864
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=1.4e-22 Score=210.49 Aligned_cols=237 Identities=23% Similarity=0.279 Sum_probs=215.9
Q ss_pred CCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHH
Q 003146 225 EIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRR 302 (844)
Q Consensus 225 ~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~ 302 (844)
|.+|.++++|.+++++++..++.+|.+++....+++..+.+.|+++.|+++|.+ +.+.+..|++.|.+++.. +..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 468999999999999999999999999998887788999999999999999998 567899999999999998 778888
Q ss_pred HhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhc-cCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-
Q 003146 303 IGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALS-SNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD- 380 (844)
Q Consensus 303 i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~- 380 (844)
+.. .|+++.|+.+|+++++.++..|+++|.||+ .+++++..+.+.|+++.|+++|.++++.++..++++|++|+..+
T Consensus 82 ~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 887 999999999999999999999999999999 56778999999999999999999999999999999999999854
Q ss_pred hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHH
Q 003146 381 QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILA 459 (844)
Q Consensus 381 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~ 459 (844)
+.+..+.+.|+++.|+.++.++++.++..|+++|.||+.. ++++..+++.|+++.|+.++.+++ ..+++.|+++|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~ 237 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD---SEVQKEAQRALE 237 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc---HHHHHHHHHHHH
Confidence 5667888899999999999999999999999999999984 567788889999999999998665 468899999999
Q ss_pred HHhcCh
Q 003146 460 RIAQSE 465 (844)
Q Consensus 460 ~l~~~~ 465 (844)
|++...
T Consensus 238 ~l~~~~ 243 (252)
T 4hxt_A 238 NIKSGG 243 (252)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 998653
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=1.3e-22 Score=211.06 Aligned_cols=234 Identities=20% Similarity=0.218 Sum_probs=212.6
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccC-CChhHHHH
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSD-LPAVWRRI 303 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~~~i 303 (844)
..|.+..+|.+++++++..++++|+++......+...+.+.|+++.|+++|.+ +.+.+..|++.|.+++. ++.++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 68999999999999999999999988877766677889999999999999988 56789999999999998 57788888
Q ss_pred hhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccH-HHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-h
Q 003146 304 GRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNA-LHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD-Q 381 (844)
Q Consensus 304 ~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~ 381 (844)
.. .|++|.|+.+|+++++.+++.|+++|.||+.+++++ ..+.+.|+++.|+++|.+++..++..++++|++|+..+ +
T Consensus 93 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 ID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 87 999999999999999999999999999999998887 88889999999999999999999999999999999854 6
Q ss_pred hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHH
Q 003146 382 SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILAR 460 (844)
Q Consensus 382 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~ 460 (844)
.+..+.+.|+++.|+.+|.++++.++..|+++|.||+.. ++++..+++.|+++.|+.++.+.+ ..+++.|+++|.|
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~v~~~A~~~L~~ 248 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN---EKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS---SHHHHTHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence 777888899999999999999999999999999999964 567888899999999999998765 3588999999999
Q ss_pred Hhc
Q 003146 461 IAQ 463 (844)
Q Consensus 461 l~~ 463 (844)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 874
No 33
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.88 E-value=3.3e-20 Score=217.64 Aligned_cols=574 Identities=12% Similarity=0.099 Sum_probs=391.4
Q ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHH
Q 003146 184 GIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKM 263 (844)
Q Consensus 184 ~i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i 263 (844)
.+..++..+.+++......|...+..++..-...+.| ...+|.+.+.+ +++.+++..+..+|..+...-.. . -
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~---~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~-~--~ 83 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTR---SELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG-P--E 83 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHH---HTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS-G--G
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHH---HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc-H--H
Confidence 3778889999988877667777777666422111111 12577777666 56778898888888876532100 0 0
Q ss_pred hcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccH
Q 003146 264 ANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNA 342 (844)
Q Consensus 264 ~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~ 342 (844)
.....++.|..++.+ +..+|..|+..|.+++..-... .+ . ...+|.+..+.+++++..+..|+.++..+...-..
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-~~-~-~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~- 159 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-DL-E-AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS- 159 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-HH-H-HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-HH-H-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-
Confidence 112245556666655 5678999999999987753211 11 1 44677777888888899999999999888754331
Q ss_pred HHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc
Q 003146 343 LHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE 422 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 422 (844)
.+ ....++.+..++.++++.+|..++.+|+.++..-... ......+|.|..++.++++.+|..|+.+|..++..-+
T Consensus 160 -~~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 160 -AV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp -HH-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred -HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC
Confidence 11 2345677778888889999999999999987643221 1224678999999999999999999999999885422
Q ss_pred cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 423 NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 423 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
. ......++|.+..++.+.+ ..+|..++.+|..++..- .-......++.+..++++.++.+|..++.+|..++.
T Consensus 236 ~--~~~~~~~~~~l~~~~~d~~---~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 236 Q--EDLEALVMPTLRQAAEDKS---WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp H--HHHHHHTHHHHHHHHTCSS---HHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 1 1122346777777775443 568899999999987642 111223568889999999999999999999999987
Q ss_pred CCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHH
Q 003146 502 HSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVG 581 (844)
Q Consensus 502 ~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~ 581 (844)
..+. ..+........++.+..++.+.++.+|..++++|..++...+.... .+..++.+..++. +.+++++..++.
T Consensus 311 ~~~~-~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~p~l~~~l~-d~~~~Vr~~a~~ 385 (588)
T 1b3u_A 311 NLSA-DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT---IEHLLPLFLAQLK-DECPEVRLNIIS 385 (588)
T ss_dssp TSCT-TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH---HHHTHHHHHHHHT-CSCHHHHHHHHT
T ss_pred HhCh-hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH---HHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 6532 1111122345678889999999999999999999888765443211 1224566777776 467888888777
Q ss_pred HHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhc
Q 003146 582 ILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLS 661 (844)
Q Consensus 582 ~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~ 661 (844)
++..+..... ........+|.|..++.+.+. .++..++.++..++.....+ .....++|.+..+++
T Consensus 386 ~l~~l~~~~~---~~~~~~~~lp~l~~~~~d~~~-------~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 386 NLDCVNEVIG---IRQLSQSLLPAIVELAEDAKW-------RVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLV 451 (588)
T ss_dssp TCHHHHHHSC---HHHHHHHHHHHHHHHHTCSSH-------HHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGG
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhc
Confidence 6665532110 011123467788887765442 46667777777665321111 111236788999999
Q ss_pred cCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHH
Q 003146 662 SESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADE 741 (844)
Q Consensus 662 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~ 741 (844)
++++.+|..|+.+++.+...... .+ .....++.|+.++.++++.+|.
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~~-------------------------------~~--~~~~llp~l~~~~~~~~~~~R~ 498 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFGK-------------------------------EW--AHATIIPKVLAMSGDPNYLHRM 498 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCH-------------------------------HH--HHHHTHHHHHHTTTCSCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCc-------------------------------hh--HHHHHHHHHHHHhhCCCHHHHH
Confidence 99999999999999998753211 01 1234678888888899999999
Q ss_pred HHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhhhcCCC
Q 003146 742 TVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDS 821 (844)
Q Consensus 742 ~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~~~~~ 821 (844)
.++.++..++..-.. .. .-...++.+.+.+.++++++|..++++|.+++..-.. ..+.....+.|..++.+.|+
T Consensus 499 ~a~~~l~~l~~~~~~----~~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~~~p~l~~l~~d~d~ 572 (588)
T 1b3u_A 499 TTLFCINVLSEVCGQ----DI-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDV 572 (588)
T ss_dssp HHHHHHHHHHHHHHH----HH-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHhcCH----HH-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHcCCCch
Confidence 999999998754211 11 1123578888999999999999999999999864211 11111223466678889999
Q ss_pred CchHHHHHHHHHHh
Q 003146 822 RLKPAVAKLLAQLE 835 (844)
Q Consensus 822 ~~~~~aa~~L~~l~ 835 (844)
++|..|..+|+.+.
T Consensus 573 ~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 573 DVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999998875
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=197.33 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=165.7
Q ss_pred CcHHHHHHHhcC-CH--HHHHHHHHHHHHccC-CChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCcc
Q 003146 267 GSLSALVKSLTR-DV--EEQREAVGLLLDLSD-LPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQN 341 (844)
Q Consensus 267 g~i~~Lv~~L~~-~~--~~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~ 341 (844)
-+++.+|++|.+ +. +.+..|++.|.+|+. ++.++..|.. .|+||+||.+|+++++.+|+.|+++|.||+. +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 378999999998 34 678889999999996 5678888887 9999999999999999999999999999997 5789
Q ss_pred HHHHHHcCChHHHHHHhc-cCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh---c-------------CCH
Q 003146 342 ALHMAEAGYFKPLVQYLK-EGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFR---V-------------GKL 404 (844)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------------~~~ 404 (844)
+..|++.|++++|+++|+ +++.+++.+++.+|++|+..+++|..|.+ ++||+|+.++. + .++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 57889999999999999999999999987 57999998763 1 256
Q ss_pred HHHHHHHHHHHHhhcC-cccHHHHHHc-CChHHHHHHhhcc---CCcchhhHHHHHHHHHHHhc
Q 003146 405 EAKLSALNALQNLSLL-AENIQRLVIS-GIVSPLLQLLFSV---TSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 405 ~~~~~A~~aL~nLs~~-~~~~~~i~~~-g~v~~Lv~lL~~~---~~~~~~l~~~a~~~L~~l~~ 463 (844)
.+++.|..+|+||++. +++|..|.+. |+|++|+.+++.. .+.+...+|.|+.+|+||+.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 8999999999999985 5899999875 6789999999864 11123456777777777754
No 35
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.87 E-value=2.3e-19 Score=210.56 Aligned_cols=535 Identities=14% Similarity=0.074 Sum_probs=370.0
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCCHHHHHHHHHHHHHccCCChhHHHHhhh
Q 003146 227 IAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRI 306 (844)
Q Consensus 227 ~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~ 306 (844)
+..+++.|.+++..+|..+...|..++..-...+ . ....++.|...+..+.++|..++..|..+...-.... . .
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~-~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~--~-~ 85 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--T-RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--Y-V 85 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--H-HHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG--G-G
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH--H-H
Confidence 6678888999999999999999998864321110 0 1123555555554456788888888887664311111 1 1
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASL 386 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (844)
...++.|..++.++++.++..|+.+|.+++..-.. .. ...-.++.+.++..+++...|..++.+++.+...-...
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~-~~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP-SD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-HH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH-HH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 45778888888889999999999999999864322 11 22234555556666667788888888888876542111
Q ss_pred hhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-
Q 003146 387 GEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE- 465 (844)
Q Consensus 387 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~- 465 (844)
.....+|.+..++.++++.+|..|+.+|..++..-+.. ......+|.+..++.+.+ ..++..|+.+|..++..-
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~---~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQ---DSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSC---HHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHhCC
Confidence 12346788888999999999999999999998654321 223466788888876554 457888999998887541
Q ss_pred hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003146 466 SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSK 545 (844)
Q Consensus 466 ~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~ 545 (844)
........++.+..++++.++.+|..++.+|..++...+.+. .....++.+..++.++++++|..|+..|..+..
T Consensus 236 ~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-----TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-----HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-----chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 111223467778888888899999999999999986532221 234578999999999999999999999988876
Q ss_pred hhhHHHHH-HhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhH
Q 003146 546 DVYEELAE-QLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWL 624 (844)
Q Consensus 546 ~~~~~i~~-~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l 624 (844)
..+..... ...+..++.+..++. +.+..++..++.+|..++.. ..........+|.+..++++++ ..+
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~~~---~~~~~~~~~l~p~l~~~l~d~~-------~~V 379 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPI---LGKDNTIEHLLPLFLAQLKDEC-------PEV 379 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHH---HCHHHHHHHTHHHHHHHHTCSC-------HHH
T ss_pred HhChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH---hhHhHHHHHHHHHHHHHhCCCc-------hHH
Confidence 54422110 111234566666666 57789999999999988431 1111122357788889887654 246
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcC
Q 003146 625 VESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFC 704 (844)
Q Consensus 625 ~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c 704 (844)
+..++.+|..+......+. ....++|.|..++++.++.+|..++.+++.++.....
T Consensus 380 r~~a~~~l~~l~~~~~~~~----~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------- 435 (588)
T 1b3u_A 380 RLNIISNLDCVNEVIGIRQ----LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV-------------------- 435 (588)
T ss_dssp HHHHHTTCHHHHHHSCHHH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--------------------
T ss_pred HHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--------------------
Confidence 7777777766554322221 1235789999999999999999999999998753211
Q ss_pred cccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHH
Q 003146 705 EVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQ 784 (844)
Q Consensus 705 ~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~ 784 (844)
.......++.+...|.+.+..||++|+.+|..++.....+ . .-...++.+..++.+++..+|
T Consensus 436 -------------~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~-~~~~llp~l~~~~~~~~~~~R 497 (588)
T 1b3u_A 436 -------------EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----W-AHATIIPKVLAMSGDPNYLHR 497 (588)
T ss_dssp -------------GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----H-HHHHTHHHHHHTTTCSCHHHH
T ss_pred -------------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----h-HHHHHHHHHHHHhhCCCHHHH
Confidence 0011235688899999999999999999999998643111 0 112346677777788999999
Q ss_pred HHHHHHHHHHHhhhhhhHhhccccchhHHhhhhcCCCCchHHHHHHHHHHhh
Q 003146 785 EKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 785 ~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~ 836 (844)
..+++++..+...-.. ..+....-+.|..++++.++.+|..+.++|..+..
T Consensus 498 ~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 498 MTTLFCINVLSEVCGQ-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 9999999998764321 12333334678889999999999999999998864
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=193.27 Aligned_cols=193 Identities=17% Similarity=0.147 Sum_probs=171.8
Q ss_pred CHHHHHHHhCCCCc--hHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHH
Q 003146 226 IIAVLLNRLGSSKP--YNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWR 301 (844)
Q Consensus 226 ~~p~l~~lL~s~~~--~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~ 301 (844)
++|.++++|.++++ +++..+..+|.+++.+++.++..+.+.|+++.||++|.+ +.+.|..|+++|++|+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 79999999999988 888899999999998999999999999999999999998 567999999999999984 78888
Q ss_pred HHhhhhCcHHHHHHhhc-CCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhc---c-------------CCHH
Q 003146 302 RIGRIQGCIVMLVSMLS-GNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLK---E-------------GSDM 364 (844)
Q Consensus 302 ~i~~~~g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~---~-------------~~~~ 364 (844)
.|.+ .|+||+|+.+|+ +++..++++|+++|+||+..+.+|..|++. ++++|++++. + .+..
T Consensus 89 ~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 8987 999999999997 679999999999999999999999999874 6999988663 1 2457
Q ss_pred HHHHHHHHHHHhhcCc-hhhhhhhh-cCchHHHHHHhhcC------CHHHHHHHHHHHHHhhcC
Q 003146 365 SKILMATALSRMELTD-QSRASLGE-DGAIEPLVRMFRVG------KLEAKLSALNALQNLSLL 420 (844)
Q Consensus 365 ~~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~------~~~~~~~A~~aL~nLs~~ 420 (844)
++.+++.+|.||+..+ ++|..+.+ .|.|++|+.+++.+ +...++.|+.+|+|||..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999854 89999987 57789999999863 457899999999999864
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.83 E-value=1.8e-19 Score=181.67 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=178.5
Q ss_pred hCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccC-CChhH
Q 003146 223 EAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSD-LPAVW 300 (844)
Q Consensus 223 ~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~-~~~~~ 300 (844)
..+..|.+..+|.++++.++..++++|++++..+++++..+.+.|+++.|+++|.+ +.+.+..|+++|.+++. ++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34589999999999999999999999999988888888999999999999999988 56789999999999996 56777
Q ss_pred HHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC-CccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 003146 301 RRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT 379 (844)
Q Consensus 301 ~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (844)
..+.+ .|++|.|+.+|+++++.++..|+++|.||+.+ ++.+..+.+.|+++.|+++|.+++..++..++++|.+++..
T Consensus 90 ~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88887 99999999999999999999999999999964 44567788999999999999999999999999999999987
Q ss_pred -chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 380 -DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 380 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
++.+..+.+.|+++.|+.++.++++.+++.|+.+|.+|+.+
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 67888888999999999999999999999999999999853
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.83 E-value=4.1e-19 Score=179.04 Aligned_cols=194 Identities=23% Similarity=0.260 Sum_probs=174.9
Q ss_pred HcCChHHHHHHhccCCHHHHHHHHHHHHHhhc-CchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc-CcccH
Q 003146 347 EAGYFKPLVQYLKEGSDMSKILMATALSRMEL-TDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL-LAENI 424 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~~~ 424 (844)
..|+.++|+.+|.++++.++..++++|.+++. +++.+..+.+.|++|.|+.+|+++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45889999999999999999999999999995 46788899999999999999999999999999999999996 56788
Q ss_pred HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 425 QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
..+++.|++|.|+.+|.+++ ..+++.|+++|+|++.+. ..+.+.|+++.|+.+++++++.++..|+++|.+++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCc---HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 89999999999999998775 468899999999999764 34567799999999999999999999999999999
Q ss_pred cCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003146 501 AHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSK 545 (844)
Q Consensus 501 ~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~ 545 (844)
..+ +..+..+.+.|+++.|+.++.++++++++.|+++|.+++.
T Consensus 167 ~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGG--NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCC--cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 875 7788899999999999999999999999999999999864
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=1.7e-18 Score=212.40 Aligned_cols=591 Identities=14% Similarity=0.094 Sum_probs=364.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHh--
Q 003146 187 DVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMA-- 264 (844)
Q Consensus 187 ~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~-- 264 (844)
.++..|...+......+...+..+.... +...| .+.+|.+.+.+.+++...+..++.+|+.++......-..-.
T Consensus 94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~w---p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 94 ECLNNIGDSSPLIRATVGILITTIASKG-ELQNW---PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTC---TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhc-Ccccc---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 3444555555444555556666666432 22244 33789999999999999999999999999865433211100
Q ss_pred --cCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCcc
Q 003146 265 --NVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQN 341 (844)
Q Consensus 265 --~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~ 341 (844)
-...++.+++.+.+ +.++|..|+..|..+...... .......+.++.|+.++.++++.++..|+++|.+++.....
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 01235555666665 567899999999887654221 11111145788899999999999999999999999863221
Q ss_pred --HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhh--cCchHHHHHHh-----------hc-----
Q 003146 342 --ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGE--DGAIEPLVRMF-----------RV----- 401 (844)
Q Consensus 342 --~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL-----------~~----- 401 (844)
...+ .+.++.++..+.+.++.++..++..+..++.....+..+.. ...+|.++..+ .+
T Consensus 249 ~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 249 RLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1111 24677788888888889999999999988865433332221 24566666666 22
Q ss_pred ------CCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh-hh--cccc
Q 003146 402 ------GKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES-IL--VNKD 472 (844)
Q Consensus 402 ------~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~-~l--~~~~ 472 (844)
.+..+++.|..+|..|+...+. .++ ..++|.+...+.+.+ ...|+.|+.+|.+++.+.. .+ .-.+
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~---~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHE---WVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSS---HHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1224588899999988854221 111 124556666665543 5689999999999998752 11 1246
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA 552 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~ 552 (844)
.++.++..+++.++.+|..++++|..++...+.... ...-.+.++.|+..+.++++.+|..|+++|.+++...+..+.
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP--DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT--TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence 788899999999999999999999999864210000 001124678899999999999999999999999876554432
Q ss_pred HHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCC-HHH-HHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHH
Q 003146 553 EQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSN-KKA-TELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAG 630 (844)
Q Consensus 553 ~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-~~~-~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~ 630 (844)
.++ +..++.|+..+... +......+..+++.+.... +.. ..... ...+|.+++.+..-..... .+ ..+..
T Consensus 479 ~~l-~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~~~~~~~~~~~~~-~~l~p~l~~~~~~l~d~~~----~~-~~~~~ 550 (852)
T 4fdd_A 479 PYL-AYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDK----DL-FPLLE 550 (852)
T ss_dssp GGH-HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHGGGGCCHHHH-HHHHHHHHHHHHHSCTTCT----TH-HHHHH
T ss_pred hHH-HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhhhhhccHHHH-HHHHHHHHHHHHhcccccH----HH-HHHHH
Confidence 222 33667777777643 3333333344444442100 000 00011 1234555543322111111 12 24444
Q ss_pred HHHhccCCCCHHHHHHHHHcCCHHHHHHHhcc-----------------CCHHHHHHHHHHHHHHhhcCccccccccccc
Q 003146 631 ILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS-----------------ESVVAKSSASISLAQLSQNSLSLRKSKISKW 693 (844)
Q Consensus 631 aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~-----------------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~ 693 (844)
++..++..........+ ..+++.++++++. ++.+++..+..+++.+...-...
T Consensus 551 ~l~~i~~~~g~~~~~~~--~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~-------- 620 (852)
T 4fdd_A 551 CLSSVATALQSGFLPYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN-------- 620 (852)
T ss_dssp HHHHHHHHHGGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--------
T ss_pred HHHHHHHHHhHhHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--------
Confidence 44444322111111111 1123334444321 24567888888888887543220
Q ss_pred eecCCCCCCcCcccccccCcccchHh-hhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc--chhhhHHHHhcCChH
Q 003146 694 LCVPPSADAFCEVHDGYCFVKSTFCL-VKAGAVSPLIQVLEGKEREADETVLGALASLLQDET--WESGSNYLAKLSGTQ 770 (844)
Q Consensus 694 ~~~~~~~~~~c~~h~~~~~~~~~~~l-~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~--~~~~~~~i~~~g~i~ 770 (844)
.... ...+.++.+..++.++++.+|..|..++..++..-. +...... -++
T Consensus 621 ----------------------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~-----~lp 673 (852)
T 4fdd_A 621 ----------------------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-----FMP 673 (852)
T ss_dssp ----------------------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH-----HHH
T ss_pred ----------------------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHH
Confidence 0112 245778899999999999999999999999884321 2222222 356
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhh-hhhHhhccccchhHHhhhhcCCC--CchHHHHHHHHHHhhh
Q 003146 771 AIIKVLESGNAKAQEKALWILERIFRIE-EHRVKYGESAQVVLIDLAQNGDS--RLKPAVAKLLAQLELL 837 (844)
Q Consensus 771 ~lv~ll~~~~~~~~~~A~~~L~~i~~~~-~~~~~~~~~a~~~Lv~ll~~~~~--~~~~~aa~~L~~l~~~ 837 (844)
.+++.+..+++.++..|+|+++.+.... +.-..|-...-.+|+.++++.+. .+++.|+.++++|+..
T Consensus 674 ~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 674 ILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh
Confidence 6778887788999999999999997653 22334443334688888887543 6888999999999765
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=2.1e-17 Score=202.77 Aligned_cols=597 Identities=10% Similarity=0.024 Sum_probs=375.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChH--HH--hhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhH
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSE--WI--NEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYK 260 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~--~i--~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~ 260 (844)
++.++..+.+++......++..+..++++....-. .+ .-...+|.+.+.+++++..+|..++.+|..++.......
T Consensus 130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~ 209 (852)
T 4fdd_A 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209 (852)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH
Confidence 67888888888776677778888888865432100 00 012267888888888899999999999998875432211
Q ss_pred HHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC-hhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 003146 261 EKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP-AVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN 338 (844)
Q Consensus 261 ~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~ 338 (844)
.. .-.+.++.+++.+.+ +.+.|..|+..|..++... ..-.... .+.++.++.++.+.++.++..|+..+..++..
T Consensus 210 ~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 210 ML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 00 001346677777776 5678999999999887642 2211111 35788888888999999999999999999875
Q ss_pred CccHHHHH--HcCChHHHHHHh-----------cc-----------CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHH
Q 003146 339 TQNALHMA--EAGYFKPLVQYL-----------KE-----------GSDMSKILMATALSRMELTDQSRASLGEDGAIEP 394 (844)
Q Consensus 339 ~~~~~~i~--~~g~i~~Lv~~L-----------~~-----------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 394 (844)
...+..+. -...++.+++.+ .+ .+..++..++.+|..++.... . .+. ...++.
T Consensus 287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~-~~~-~~l~~~ 363 (852)
T 4fdd_A 287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-D-ELL-PHILPL 363 (852)
T ss_dssp TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-G-GGH-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-H-HHH-HHHHHH
Confidence 54333221 012344455555 22 112357788889998886432 1 122 246788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh----hhcc
Q 003146 395 LVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES----ILVN 470 (844)
Q Consensus 395 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~----~l~~ 470 (844)
+..++.+.+...|+.|+.+|.+++......-.-.-.+++|.++..+.+.+ ..++..++++|.+++..-. ...-
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 440 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK---ALVRSITCWTLSRYAHWVVSQPPDTYL 440 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTHHHHHHSCTTTTH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88888899999999999999999976542111112456788888886654 4688999999999986421 1112
Q ss_pred cchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 471 KDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 471 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
.+.++.|+..+.+.++.+|.+|+++|.+++...+. ..... -.+.++.|+.++...+......+..++..++...+..
T Consensus 441 ~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~-~l~~~--l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 441 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPY--LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-GGGGG--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH-hhHhH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 35688888889888999999999999999865321 11111 1346778888888777766666677777766433321
Q ss_pred H--HHHhchhhHHHHHH---HhcCCCCHHHHHHHHHHHhcCCCCC-HHHHHHHHhCCChHHHHHHhhcC---------CC
Q 003146 551 L--AEQLGDKYLNILVD---ITLSSTSENEKAAAVGILSNLPVSN-KKATELLKKTNLLPSLISAATSS---------TI 615 (844)
Q Consensus 551 i--~~~l~~~~l~~Lv~---lL~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~l~~~~~v~~L~~ll~~~---------~~ 615 (844)
. .+.+ ...++.+++ .+.+ ++.+.+ .+..+++.+...- ......+ ...++.++.+++.. +.
T Consensus 518 ~~~~~~~-~~l~p~l~~~~~~l~d-~~~~~~-~~~~~l~~i~~~~g~~~~~~~--~~i~~~~~~~l~~~l~~~~~~~~~~ 592 (852)
T 4fdd_A 518 LNKPEYI-QMLMPPLIQKWNMLKD-EDKDLF-PLLECLSSVATALQSGFLPYC--EPVYQRCVNLVQKTLAQAMLNNAQP 592 (852)
T ss_dssp GCCHHHH-HHHHHHHHHHHHHSCT-TCTTHH-HHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hccHHHH-HHHHHHHHHHHHhccc-ccHHHH-HHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 1 0111 123444443 3332 223332 3444444442200 0001100 11233444444321 00
Q ss_pred -CCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccce
Q 003146 616 -TKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWL 694 (844)
Q Consensus 616 -~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~ 694 (844)
........++..++.++..++...+.+....+...++++.+.+.+++.++.+|..|..+++.++......
T Consensus 593 ~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--------- 663 (852)
T 4fdd_A 593 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH--------- 663 (852)
T ss_dssp TTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG---------
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH---------
Confidence 0001122456677777777765434444444556789999999999999999999999999998543320
Q ss_pred ecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccc--cchhhhHHHHhcCChHHH
Q 003146 695 CVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE--TWESGSNYLAKLSGTQAI 772 (844)
Q Consensus 695 ~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~--~~~~~~~~i~~~g~i~~l 772 (844)
+.-.-...++.++..|.+++++++..|+++++.++... .....+. +.+++|
T Consensus 664 ----------------------~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~-----~il~~L 716 (852)
T 4fdd_A 664 ----------------------VKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-----MVLHQL 716 (852)
T ss_dssp ----------------------TGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH-----HHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHH-----HHHHHH
Confidence 11011225688889998888999999999999987532 1222222 347889
Q ss_pred HHHhhcC--CHHHHHHHHHHHHHHHhhh-hhhHhhccccchhHHhhhh-cCCCCchHHHHHHHHHH
Q 003146 773 IKVLESG--NAKAQEKALWILERIFRIE-EHRVKYGESAQVVLIDLAQ-NGDSRLKPAVAKLLAQL 834 (844)
Q Consensus 773 v~ll~~~--~~~~~~~A~~~L~~i~~~~-~~~~~~~~~a~~~Lv~ll~-~~~~~~~~~aa~~L~~l 834 (844)
+++++++ ...++++|..+++++.... +....+-..-..++...+. .+|...|..|-+.|-.+
T Consensus 717 ~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~l 782 (852)
T 4fdd_A 717 VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM 782 (852)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 9999654 4589999999999998752 2111111111246666665 46666788888888776
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=2.2e-17 Score=173.90 Aligned_cols=179 Identities=19% Similarity=0.204 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHH-HhccCCHHHHHHHHHHHHHhhcCc-hhhhhhhhcCchHHHHHHh
Q 003146 322 PVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQ-YLKEGSDMSKILMATALSRMELTD-QSRASLGEDGAIEPLVRMF 399 (844)
Q Consensus 322 ~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL 399 (844)
.+.+..|...|.+++.+.+|...+.+.|++++|+. +|.++++.++..|+++|++++.++ ..+..+.+.|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 34567888899999988889999999999999999 999999999999999999999864 7888899999999999999
Q ss_pred hc-CCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hhhcccch
Q 003146 400 RV-GKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SILVNKDV 473 (844)
Q Consensus 400 ~~-~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~ 473 (844)
++ .++.+++.|++||.||+.+ +.....+++.|++|+|+.+|.+++ ..++..|+++|.+++.+. ..+.+.|+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d---~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV---QKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 96 4789999999999999976 456778889999999999998764 568899999999998753 45678899
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 474 AQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 474 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
++.|+.+|.++++.+++.++++|.+|....
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999874
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.75 E-value=9.4e-17 Score=169.11 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHH-HhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHh
Q 003146 363 DMSKILMATALSRMELTDQSRASLGEDGAIEPLVR-MFRVGKLEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLL 440 (844)
Q Consensus 363 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL 440 (844)
.+.+..|+..|.++..+.++...+...|++|+|+. +|.++++.++..|+++|+|++.+ +.++..+++.|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35677899999999998888888999999999999 99999999999999999999986 56788899999999999999
Q ss_pred hccCCcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCC
Q 003146 441 FSVTSVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENG 516 (844)
Q Consensus 441 ~~~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g 516 (844)
.++.+ ..+++.|+++|.|++.+. ..+...|+++.|+.+|+++++.++..|+++|.+++.+. ++.+..+.+.|
T Consensus 134 ~~~~~--~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv~~g 209 (296)
T 1xqr_A 134 DRDAC--DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLCSMG 209 (296)
T ss_dssp HHCSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHTT
T ss_pred ccCCC--HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHHHcC
Confidence 86532 468899999999999763 24556789999999999999999999999999999875 67888999999
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
+++.|+.+|.++++.+++.|+.+|.++....+..
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999998875543
No 43
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.70 E-value=1.5e-14 Score=177.85 Aligned_cols=600 Identities=12% Similarity=0.076 Sum_probs=357.1
Q ss_pred cHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCCcChHHHhh--CCCHHHHHHHhCCC--CchHHHHHHHHHHHhHhcCh
Q 003146 184 GIDDVMLQLKHG--DDKNLKFALLELRELISAKTVDSEWINE--AEIIAVLLNRLGSS--KPYNRLIMIQILRNLASENA 257 (844)
Q Consensus 184 ~i~~lv~~L~~~--~~~~~~~a~~~l~~L~~~~~~~~~~i~~--~~~~p~l~~lL~s~--~~~~~~~a~~~L~~L~~~~~ 257 (844)
-++.++..+.+. +......++..+..++.+-. .+.+.. ...+|.+.+.+.++ +..+|..++.+|..++....
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 367788888877 66566677788888876421 111221 12567777888776 57899999999999875322
Q ss_pred hhHH-HHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-Ch-hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHH
Q 003146 258 DYKE-KMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PA-VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLN 333 (844)
Q Consensus 258 ~~~~-~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~-~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~ 333 (844)
.+-. .......++.+...+.+ +.+.|..++..|..+... +. ....+ . ...++.++..+.+.++.++..|+..+.
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2100 00001134555566655 467888898888887653 22 22222 1 367888888888888999999998888
Q ss_pred HhccCCc---------------------cHHHHHHcCChHHHHHHhcc-------CCHHHHHHHHHHHHHhhcCchhhhh
Q 003146 334 ALSSNTQ---------------------NALHMAEAGYFKPLVQYLKE-------GSDMSKILMATALSRMELTDQSRAS 385 (844)
Q Consensus 334 nLs~~~~---------------------~~~~i~~~g~i~~Lv~~L~~-------~~~~~~~~aa~~L~~Ls~~~~~~~~ 385 (844)
+++.... ....-.-...++.+++.|.. ++..+|..++.+|..++..... .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h
Confidence 8864310 00000012346667777753 2346788888888888764221 1
Q ss_pred hhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc--cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 386 LGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE--NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 386 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
+. ...++.+...+.+.+...|..|+.+|.+++.... .....+ ..++|.++..|.+.+ ..++..|+++|.+++.
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~---~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS---VVVRDTAAWTVGRICE 437 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHH
Confidence 11 2466777788888899999999999999997643 222222 347888888887654 4688999999999986
Q ss_pred Ch-hhh----cccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC-------------hhHHHHHHHhCCcHHHHHHHh
Q 003146 464 SE-SIL----VNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS-------------ASNVRRKMKENGAIHLLLPFL 525 (844)
Q Consensus 464 ~~-~~l----~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-------------~~~~~~~i~~~g~i~~Lv~ll 525 (844)
.- ... .-...++.++..+.+. +.++..++++|.+++...+ .......+ ...++.|+.++
T Consensus 438 ~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l 514 (876)
T 1qgr_A 438 LLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETT 514 (876)
T ss_dssp HCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHT
T ss_pred hCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHH
Confidence 52 111 1135577788888764 8899999999999885410 00000000 12344455554
Q ss_pred ccC---CHHHHH--------------------------------------------------------HHHHHHHHhhhh
Q 003146 526 MET---NANIRA--------------------------------------------------------AALNLVCTLSKD 546 (844)
Q Consensus 526 ~~~---~~~v~~--------------------------------------------------------~A~~~L~~ls~~ 546 (844)
... +..++. .+..++..+...
T Consensus 515 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~ 594 (876)
T 1qgr_A 515 DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594 (876)
T ss_dssp TSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 432 123333 333444433333
Q ss_pred hh-HHHHHHhchhhHHHHHHHhcCCC-CHHHHHHHHHHHhcCCCCCH-HHHHHHHhCCChHHHHHHhhcCCCCCCCCchh
Q 003146 547 VY-EELAEQLGDKYLNILVDITLSST-SENEKAAAVGILSNLPVSNK-KATELLKKTNLLPSLISAATSSTITKTHSTPW 623 (844)
Q Consensus 547 ~~-~~i~~~l~~~~l~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~~~~-~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~ 623 (844)
.+ ..+..++ +..++.++.++.+.. ...++..++.+++.++.... .....+ ...++.+...+.+.. ...
T Consensus 595 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~------~~~ 665 (876)
T 1qgr_A 595 VQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYA------EYQ 665 (876)
T ss_dssp SCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCT------THH
T ss_pred hChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcc------hHH
Confidence 22 2222111 224566667776532 12456667777766643110 011111 125677777776541 124
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCC
Q 003146 624 LVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS--ESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSAD 701 (844)
Q Consensus 624 l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 701 (844)
++..++.++..++......+... -..+++.|.+.+++ .+..+|..+..++++++......
T Consensus 666 vr~~a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~---------------- 727 (876)
T 1qgr_A 666 VCLAAVGLVGDLCRALQSNIIPF--CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE---------------- 727 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh----------------
Confidence 67778888877764322222221 23677888888877 35789999999999997532110
Q ss_pred CcCcccccccCcccchHhhhcCCchHHHHhhcCCC-----------hhhHHHHHHHHHhhhccccch-----hhhHHHHh
Q 003146 702 AFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKE-----------READETVLGALASLLQDETWE-----SGSNYLAK 765 (844)
Q Consensus 702 ~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~-----------~~v~~~A~~AL~~L~~~~~~~-----~~~~~i~~ 765 (844)
|.-.-...++.|.+.+.... ..++..++.++..+...-... .....+.
T Consensus 728 ---------------~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 791 (876)
T 1qgr_A 728 ---------------FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ- 791 (876)
T ss_dssp ---------------GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG-
T ss_pred ---------------HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHH-
Confidence 10011235567777775432 268888888888776432100 0000110
Q ss_pred cCChHHHHHHh----hcC--CHHHHHHHHHHHHHHHhhh---hhhHhhccccchhHHh-hhhcCCCCchHHHHHHHHHHh
Q 003146 766 LSGTQAIIKVL----ESG--NAKAQEKALWILERIFRIE---EHRVKYGESAQVVLID-LAQNGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 766 ~g~i~~lv~ll----~~~--~~~~~~~A~~~L~~i~~~~---~~~~~~~~~a~~~Lv~-ll~~~~~~~~~~aa~~L~~l~ 835 (844)
.-++.++.++ .++ ++.+|..|+.+|..++... +....+......+|+. .+.++++.+|..|+.+++++.
T Consensus 792 -~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~ 870 (876)
T 1qgr_A 792 -PRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870 (876)
T ss_dssp -GGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHH
Confidence 0123333333 555 7899999999999998653 2222223333457777 888999999999999999999
Q ss_pred hhhcCC
Q 003146 836 LLQAQS 841 (844)
Q Consensus 836 ~~~~~s 841 (844)
.+..+|
T Consensus 871 ~~~~~~ 876 (876)
T 1qgr_A 871 KLKNQA 876 (876)
T ss_dssp HHHTCC
T ss_pred HhhcCC
Confidence 887765
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=2.2e-14 Score=160.93 Aligned_cols=438 Identities=13% Similarity=0.081 Sum_probs=311.7
Q ss_pred CHHHHHHHhC-CCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC---CHHHHHHHHHHHHHccC-CCh--
Q 003146 226 IIAVLLNRLG-SSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR---DVEEQREAVGLLLDLSD-LPA-- 298 (844)
Q Consensus 226 ~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~---~~~~~~~A~~~L~~Ls~-~~~-- 298 (844)
++++|.+.|. +.-.+.|..|+..|+.++.++.. . +..++++.|+..|.. |.+.-+.++.+|.++-. ++.
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~---~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL---E-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT---H-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH---H-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 7888888886 44678899999999999765532 2 335679999999987 45677788888877533 221
Q ss_pred ---------------hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC-c-cHHHHHH-cCChHHHHHHhcc
Q 003146 299 ---------------VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT-Q-NALHMAE-AGYFKPLVQYLKE 360 (844)
Q Consensus 299 ---------------~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~-~-~~~~i~~-~g~i~~Lv~~L~~ 360 (844)
+.+.+.+..+.|+.|+.+|.++|..++.+++..|..|+.+. + ++..|.. .++++.|+.+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 34456666889999999999999999999999999998643 3 5777874 6999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCc-hhhhhhhhcCchHHHHHHhhcCCH----HHHHHHHHHHHHhhcC-cccHHHHHHcCChH
Q 003146 361 GSDMSKILMATALSRMELTD-QSRASLGEDGAIEPLVRMFRVGKL----EAKLSALNALQNLSLL-AENIQRLVISGIVS 434 (844)
Q Consensus 361 ~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~ 434 (844)
..+..|..+...|.+|+.++ +.++.+.-.|+++.|+.+++.... .+..+++..|.||..+ +.|+..+.+.|++|
T Consensus 178 ~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 178 SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 99999999999999999987 455555558999999999987544 6788999999999986 45888888999999
Q ss_pred HHHHHhhccCCcch----hh--HHHHHHHHHHHhcCh----------hhhcccchHHHHHHhhccC--ChHHHHHHHHHH
Q 003146 435 PLLQLLFSVTSVLM----TL--REPASAILARIAQSE----------SILVNKDVAQQMLSLLNLC--SPTIQYHLLHAL 496 (844)
Q Consensus 435 ~Lv~lL~~~~~~~~----~l--~~~a~~~L~~l~~~~----------~~l~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L 496 (844)
.|..+|........ .+ ...+..++.-+.... ..+.+.|+++.|++++... ...++..|+.++
T Consensus 258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tl 337 (651)
T 3grl_A 258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTV 337 (651)
T ss_dssp GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 99999875432100 11 112556666665542 2567788999999998764 567999999999
Q ss_pred HHhhcCCChhHHHHHHHhCC---------cHHHHHHHhccCC-HHHHHHHHHHHHHhhhhhhH---HHHHHhchh-----
Q 003146 497 NSIAAHSSASNVRRKMKENG---------AIHLLLPFLMETN-ANIRAAALNLVCTLSKDVYE---ELAEQLGDK----- 558 (844)
Q Consensus 497 ~~L~~~~~~~~~~~~i~~~g---------~i~~Lv~ll~~~~-~~v~~~A~~~L~~ls~~~~~---~i~~~l~~~----- 558 (844)
..+.+.+ ...+..+.+.. .+..|+.++.+.+ ..+|..|+.++.....++.. .+...+-+.
T Consensus 338 a~~irgN--~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~ 415 (651)
T 3grl_A 338 SEVIRGC--QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDAT 415 (651)
T ss_dssp HHHHTTC--HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCT
T ss_pred HHHHhCC--HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccC
Confidence 9999987 77777777543 2333444455544 58999999999888765542 344332111
Q ss_pred -----hHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhC--------C---ChHHHHHHhhcCCCCCCCCch
Q 003146 559 -----YLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKT--------N---LLPSLISAATSSTITKTHSTP 622 (844)
Q Consensus 559 -----~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~--------~---~v~~L~~ll~~~~~~~~~~~~ 622 (844)
.-..|..-+. +.|+-....|+-+|.++-.++++.+..+.+- . .++.+..+|..+. ..
T Consensus 416 ~~~~s~g~ll~~~l~-s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~------~~ 488 (651)
T 3grl_A 416 GNTVSAGQLLCGGLF-STDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGS------KI 488 (651)
T ss_dssp TSSSCHHHHHHHHHT-SSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTC------CH
T ss_pred CCCCCcchhhhhhhc-cCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCC------ch
Confidence 1122334443 3566666778888999988888877665541 1 1344555554321 12
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHH-HcCCHHHHHHHhcc--C--CHHHHHHHHHHHHH
Q 003146 623 WLVESVAGILIRFTDPSDKKLQQYSV-QHGVIRLLVKLLSS--E--SVVAKSSASISLAQ 677 (844)
Q Consensus 623 ~l~e~a~~aL~~l~~~~~~~~~~~i~-~~g~i~~Lv~lL~~--~--~~~vk~~Aa~aL~~ 677 (844)
.+.-.-+..|+.|... ++...+.+. +...++.|++.+.. + ++.+|-.++..|+-
T Consensus 489 ri~vgyL~LL~~WL~e-~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi 547 (651)
T 3grl_A 489 QTRVGLLMLLCTWLSN-CPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGI 547 (651)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-ChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 3445666777777774 454444444 44468999988853 2 34578888888874
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.70 E-value=6.9e-14 Score=171.65 Aligned_cols=553 Identities=13% Similarity=0.060 Sum_probs=352.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhHhcC-hhhHHHHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCC--ChhH-
Q 003146 227 IAVLLNRLGSSKPYNRLIMIQILRNLASEN-ADYKEKMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDL--PAVW- 300 (844)
Q Consensus 227 ~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~--~~~~- 300 (844)
-+.+++.|.++++.+|..+..+|..++... +... -...++.|+..+.+ +...+..++..+..+++. +..+
T Consensus 97 k~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 172 (861)
T 2bpt_A 97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA 172 (861)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhH
Confidence 455777788888899999999999887542 2100 01246778888876 456788888888888764 2211
Q ss_pred -HHHhhhhCcHHHHHHhhcCC--ChHHHHHHHHHHHHhccC-Ccc-HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 301 -RRIGRIQGCIVMLVSMLSGN--DPVASHDAGKLLNALSSN-TQN-ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSR 375 (844)
Q Consensus 301 -~~i~~~~g~i~~Lv~lL~s~--d~~~~~~A~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 375 (844)
... ....++.+...+.++ ++.++..|+.++.++... ..+ .........++.+.+.+.+++..+|..++.+|..
T Consensus 173 ~~~~--~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 173 LVSS--SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp TGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111 134577778888776 789999999999887421 111 0001112245666777778888999999999988
Q ss_pred hhcCch--hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCccc------------------HHHHHHcCChHH
Q 003146 376 MELTDQ--SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAEN------------------IQRLVISGIVSP 435 (844)
Q Consensus 376 Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~------------------~~~i~~~g~v~~ 435 (844)
+..... ....+. ...++.+...+.+.++.++..|+..+..++..... ....+ ..++|.
T Consensus 251 l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ 328 (861)
T 2bpt_A 251 IMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPN 328 (861)
T ss_dssp HHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHH
Confidence 875421 111111 15667777888888999999999999988754211 11111 346778
Q ss_pred HHHHhhccC----CcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHH
Q 003146 436 LLQLLFSVT----SVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRK 511 (844)
Q Consensus 436 Lv~lL~~~~----~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 511 (844)
++..|...+ ++...++..+..+|..++..-.--.-...++.+...+.+.++..|+.++.+|..++...+.......
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 888886532 1123577888889988876421101123455666677788899999999999999976432333333
Q ss_pred HHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHH-HHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCC
Q 003146 512 MKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEEL-AEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSN 590 (844)
Q Consensus 512 i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i-~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 590 (844)
+. ..++.|+..+.++++.+|..+++++..++...+..+ ....-...++.++..+.++ +.++..++.+|.++...-
T Consensus 409 l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 409 VH--QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhc
Confidence 32 478899999999999999999999988876543211 0011123567777888643 788888888888774310
Q ss_pred -----HHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC--
Q 003146 591 -----KKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE-- 663 (844)
Q Consensus 591 -----~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-- 663 (844)
......+ ...++.|+.++.+.+.. ..++..+..++..+......+....+. .++|.+++.+...
T Consensus 485 ~~~~~~~l~~~~--~~il~~L~~~l~~~d~~-----~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 485 AEATPSPIYNFY--PALVDGLIGAANRIDNE-----FNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMS 555 (861)
T ss_dssp SSSSSCGGGGGH--HHHHHHHHHHHTCSCCG-----GGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTT
T ss_pred ccccchhhHHHH--HHHHHHHHHHHhCcCcc-----hHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHh
Confidence 0011111 23456677777643311 246677788887776543333322222 3667777777532
Q ss_pred -------------CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHH
Q 003146 664 -------------SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQ 730 (844)
Q Consensus 664 -------------~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~ 730 (844)
...++..+..+|+++........ .-.-...++.++.
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------------------------------~~~~~~l~~~l~~ 604 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSV-------------------------------EPVADMLMGLFFR 604 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGT-------------------------------GGGHHHHHHHHHH
T ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------------------HHHHHHHHHHHHH
Confidence 34577888889998876433200 0001235677888
Q ss_pred hhcCCCh-hhHHHHHHHHHhhhcccc--chhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhh-hHhhcc
Q 003146 731 VLEGKER-EADETVLGALASLLQDET--WESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEH-RVKYGE 806 (844)
Q Consensus 731 lL~~~~~-~v~~~A~~AL~~L~~~~~--~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~-~~~~~~ 806 (844)
.+.+.+. .+++.+..++.+++.... ....... -++.+...+.++++.++..|+.++..+++.... -..|..
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~-----i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 679 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-----FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH-----HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH
Confidence 8887777 899999999998885421 1111111 366778888888889999999999988765321 112222
Q ss_pred ccchhHHhhhhcCC--CCchHHHHHHHHHHhh
Q 003146 807 SAQVVLIDLAQNGD--SRLKPAVAKLLAQLEL 836 (844)
Q Consensus 807 ~a~~~Lv~ll~~~~--~~~~~~aa~~L~~l~~ 836 (844)
..-..|++.+++.+ +.+|..+..+|+.+..
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 22246667777764 8899999999988754
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.67 E-value=2.4e-14 Score=175.80 Aligned_cols=592 Identities=13% Similarity=0.100 Sum_probs=361.7
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHhcCCcChHHHh--hCCCHHHHHHHhCCC--CchHHHHHHHHHHHhHhcChhh
Q 003146 185 IDDVMLQLKHG-DDKNLKFALLELRELISAKTVDSEWIN--EAEIIAVLLNRLGSS--KPYNRLIMIQILRNLASENADY 259 (844)
Q Consensus 185 i~~lv~~L~~~-~~~~~~~a~~~l~~L~~~~~~~~~~i~--~~~~~p~l~~lL~s~--~~~~~~~a~~~L~~L~~~~~~~ 259 (844)
++.++..+.++ +......++..+..++.+-....+.+. ....+|.+.+.+.++ +..+|..++.+|..++..-..+
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778777 555666777778888865221100011 112567777778776 7889999999999875322111
Q ss_pred HH-HHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-Ch-hHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q 003146 260 KE-KMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PA-VWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNAL 335 (844)
Q Consensus 260 ~~-~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~-~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nL 335 (844)
-. .......++.+...+.+ +.+.|..++..|..++.. +. ....+. ...++.+...+.+.++.++..|+.++..+
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 00 00001134445555555 567888899888887653 22 222221 26677788888888999999999999888
Q ss_pred ccCCcc------------------HHHHHHcCChHHHHHHhccC-------CHHHHHHHHHHHHHhhcCchhhhhhhhcC
Q 003146 336 SSNTQN------------------ALHMAEAGYFKPLVQYLKEG-------SDMSKILMATALSRMELTDQSRASLGEDG 390 (844)
Q Consensus 336 s~~~~~------------------~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 390 (844)
+..... ..... ...++.++..|... +..++..++.+|..++..-. ..+. ..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~ 369 (861)
T 2bpt_A 294 CEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EP 369 (861)
T ss_dssp HHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HH
T ss_pred HHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HH
Confidence 753210 01111 34667777777642 24678888899988876421 1111 23
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc--cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-hh
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSLLAE--NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-SI 467 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-~~ 467 (844)
.++.+...+.+.+...|+.|+.+|..++.... .....+ ..+++.|+..+.+.+ ..++..++++|..++..- ..
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~---~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS---LQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHhhhh
Confidence 55667777788889999999999999996532 112222 246777888776554 458899999999887642 11
Q ss_pred ----hcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC---hhHHHHHHHhCCcHHHHHHHhccCC--HHHHHHHHH
Q 003146 468 ----LVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS---ASNVRRKMKENGAIHLLLPFLMETN--ANIRAAALN 538 (844)
Q Consensus 468 ----l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~i~~~g~i~~Lv~ll~~~~--~~v~~~A~~ 538 (844)
-.-...++.++..+.+. +.++..++++|.+++...+ .......+ ...++.|+.++.+.+ +.+|..+..
T Consensus 446 ~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 446 IDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp SCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 11234577788888765 8999999999999886421 01111111 224778888887543 689999999
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCC--------------CCHHHHHHHHHHHhcCCCCCHH-HHHHHHhCCCh
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSS--------------TSENEKAAAVGILSNLPVSNKK-ATELLKKTNLL 603 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~--------------~~~~~~~~a~~~L~~L~~~~~~-~~~~l~~~~~v 603 (844)
++..+....+..+...+. ..++.++..+... .....+..++.+|.++...... ... .-...+
T Consensus 523 al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~ 599 (861)
T 2bpt_A 523 ALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP--VADMLM 599 (861)
T ss_dssp HHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHH
T ss_pred HHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHH
Confidence 999888765543332222 2344455544321 1223455666666665322111 000 011345
Q ss_pred HHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCc
Q 003146 604 PSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSL 683 (844)
Q Consensus 604 ~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~ 683 (844)
+.+...+.+.+.. .+++.+..++..++.....+....+ ..++|.|.+.+++.++.++..|..+++.+.....
T Consensus 600 ~~l~~~l~~~~~~------~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 600 GLFFRLLEKKDSA------FIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp HHHHHHHHSTTGG------GTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHccCCCC------cHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 6667777654320 3567777777776643222222222 2478899999988888899999999998885432
Q ss_pred cccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCC--hhhHHHHHHHHHhhhccc--cchhh
Q 003146 684 SLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKE--READETVLGALASLLQDE--TWESG 759 (844)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~--~~v~~~A~~AL~~L~~~~--~~~~~ 759 (844)
. .+.-.-...++.++..+.+.+ ++++..++.+++.++... .+...
T Consensus 672 ~-------------------------------~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 720 (861)
T 2bpt_A 672 E-------------------------------DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp G-------------------------------GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred h-------------------------------hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 1 011112345678888887654 889999999999988642 11111
Q ss_pred hHHHHhcCChHHHHHHhhcCC-----------HHHHHHHHHHHHHHHhhhh-hhHhhcc---ccchhHHhhhhcC----C
Q 003146 760 SNYLAKLSGTQAIIKVLESGN-----------AKAQEKALWILERIFRIEE-HRVKYGE---SAQVVLIDLAQNG----D 820 (844)
Q Consensus 760 ~~~i~~~g~i~~lv~ll~~~~-----------~~~~~~A~~~L~~i~~~~~-~~~~~~~---~a~~~Lv~ll~~~----~ 820 (844)
... .++++++.++... ..+|..++.++..++..-. ..+.+.. ..-..|...+++. +
T Consensus 721 l~~-----~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~ 795 (861)
T 2bpt_A 721 LND-----IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp HHH-----HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred HHH-----HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 222 3666777765321 4578888888888875421 0011211 1112444555553 7
Q ss_pred CCchHHHHHHHHHHhh
Q 003146 821 SRLKPAVAKLLAQLEL 836 (844)
Q Consensus 821 ~~~~~~aa~~L~~l~~ 836 (844)
..+|+.|..+|..|..
T Consensus 796 ~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999965
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.67 E-value=8.2e-15 Score=171.40 Aligned_cols=511 Identities=12% Similarity=0.101 Sum_probs=335.8
Q ss_pred CCHHHHHHHhCCCCchHHHHHHHHHHHh-HhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHH
Q 003146 225 EIIAVLLNRLGSSKPYNRLIMIQILRNL-ASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWR 301 (844)
Q Consensus 225 ~~~p~l~~lL~s~~~~~~~~a~~~L~~L-~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~ 301 (844)
|-+..+.+.|++++...+..++.-+-.+ ..+.+. ..+...+++++.+ +.+.|+.+.-.+..+++. ++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-
Confidence 4567788889888776665544433222 222211 2256678888877 566777776666666552 2221
Q ss_pred HHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCch
Q 003146 302 RIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQ 381 (844)
Q Consensus 302 ~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~ 381 (844)
.-++..+.+-|+++|+.++..|+.+|.++.. ++.. ...++.+.+.|.+.++.+|..|+.++.++.....
T Consensus 85 -----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p 153 (591)
T 2vgl_B 85 -----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA 153 (591)
T ss_dssp -----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC
T ss_pred -----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh
Confidence 2356778888899999999999999988752 2211 2346778999999999999999999999876431
Q ss_pred hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH-HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHH
Q 003146 382 SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI-QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILAR 460 (844)
Q Consensus 382 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~ 460 (844)
..+...+.++.|..+|.+.++.++..|+.+|..++.+.... ..-...+.++.|+..+.+.+ ...+...+.+|..
T Consensus 154 --~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~---~~~q~~il~~l~~ 228 (591)
T 2vgl_B 154 --QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT---EWGQIFILDCLSN 228 (591)
T ss_dssp --CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHT
T ss_pred --hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC---chHHHHHHHHHHH
Confidence 12233578899999999999999999999999999764311 00011233556777666543 3456667777776
Q ss_pred HhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCC--ChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 461 IAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHS--SASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 461 l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
++..+.. .....++.+..++++.++.++..|++++..+.... +.+..+.. -....+.|+.++ ++++++|..|+.
T Consensus 229 l~~~~~~-~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~--~~~~~~~L~~L~-~~d~~vr~~aL~ 304 (591)
T 2vgl_B 229 YNPKDDR-EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML--LKKLAPPLVTLL-SGEPEVQYVALR 304 (591)
T ss_dssp SCCCSHH-HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH--HHHTHHHHHHHT-TSCHHHHHHHHH
T ss_pred hCCCChH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH--HHHHHHHHHHHh-cCCccHHHHHHH
Confidence 6543211 12356777888888899999999999999987421 11222221 123567777666 478999999999
Q ss_pred HHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCC
Q 003146 539 LVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKT 618 (844)
Q Consensus 539 ~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~ 618 (844)
.|..+....++.+.. .+..+. ...+++..++..++.+|.++.... ... .+++.|..++.+.+
T Consensus 305 ~l~~i~~~~p~~~~~-----~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~-nv~------~iv~~L~~~l~~~d---- 366 (591)
T 2vgl_B 305 NINLIVQKRPEILKQ-----EIKVFF--VKYNDPIYVKLEKLDIMIRLASQA-NIA------QVLAELKEYATEVD---- 366 (591)
T ss_dssp HHHHHHHHCCSTTTT-----CTTTTS--CCTTSCHHHHHHHHHHHHHTCCSS-THH------HHHHHHHHHTTSSC----
T ss_pred HHHHHHHhChHHHHH-----HHHhhe--eccCChHHHHHHHHHHHHHHCChh-hHH------HHHHHHHHHHhcCC----
Confidence 998887654432211 111111 111345788889999999987632 211 23455666665543
Q ss_pred CCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCC
Q 003146 619 HSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPP 698 (844)
Q Consensus 619 ~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 698 (844)
..++..++.++..++....+. ....++.|++++++....++..+..++.++....+..+
T Consensus 367 ---~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~------------ 425 (591)
T 2vgl_B 367 ---VDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY------------ 425 (591)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC------------
T ss_pred ---HHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH------------
Confidence 367889999999988753222 23468999999999999999999999999876554422
Q ss_pred CCCCcCcccccccCcccchHhhhcCCchHHHHhhc-CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhh
Q 003146 699 SADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE-GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLE 777 (844)
Q Consensus 699 ~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~-~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~ 777 (844)
..+++.|.+.++ ..+++++.++++.|+..+..-. . . ...++.+++-+.
T Consensus 426 -----------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~--~-~-----~~~l~~l~~~~~ 474 (591)
T 2vgl_B 426 -----------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAERID--N-A-----DELLESFLEGFH 474 (591)
T ss_dssp -----------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT--T-H-----HHHHHHHSTTCS
T ss_pred -----------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc--C-H-----HHHHHHHHHhhc
Confidence 347788999987 4678899999999998765421 0 0 012333443344
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhh-h-cCCCCchHHHHHHHHHHhh
Q 003146 778 SGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLA-Q-NGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 778 ~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll-~-~~~~~~~~~aa~~L~~l~~ 836 (844)
..++.+|..++.++.+++..... ........+.+.. . +.|+++|..|..+++-|..
T Consensus 475 ~~~~~vr~~~l~a~~Kl~~~~p~---~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 475 DESTQVQLTLLTAIVKLFLKKPS---ETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCCS---TTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 56889999999999999753210 0000112344443 3 3677999999988877643
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.66 E-value=9.9e-15 Score=170.71 Aligned_cols=472 Identities=13% Similarity=0.144 Sum_probs=319.4
Q ss_pred CCcHHHHHHHhcC-CHHHHHHHHHH-HHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHH
Q 003146 266 VGSLSALVKSLTR-DVEEQREAVGL-LLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNAL 343 (844)
Q Consensus 266 ~g~i~~Lv~~L~~-~~~~~~~A~~~-L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~ 343 (844)
.|.+..+-+.|.+ +.+.+..++.- +..+....+ ...+.+.+++++.+++...+..+.-++.+++....
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--- 81 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--- 81 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---
Confidence 4567778888877 45566665543 333333321 13457778889999999999888888887765221
Q ss_pred HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cc
Q 003146 344 HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AE 422 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~ 422 (844)
.++ .-.+..+.+-|.++++.+|..|..+|+++... +.. ...++.+.++|.+.++.+|+.|+.+|.++... ++
T Consensus 82 e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~ 154 (591)
T 2vgl_B 82 DMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-KIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 154 (591)
T ss_dssp HHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-GGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC
T ss_pred hHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-HHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh
Confidence 111 23567777888888999999999999887632 211 23467899999999999999999999999864 44
Q ss_pred cHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh----hhcccchHHHHHHhhccCChHHHHHHHHHHHH
Q 003146 423 NIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES----ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS 498 (844)
Q Consensus 423 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~----~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 498 (844)
.. .+.+.++.|..+|.+.+ ..++..|+.+|..++.... .-...+.+..|+..+...+|..+...+++|..
T Consensus 155 ~~---~~~~~~~~l~~lL~d~d---~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 155 MV---EDQGFLDSLRDLIADSN---PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp CH---HHHHHHHHHHHTTSCSC---HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred hc---ccccHHHHHHHHhCCCC---hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 22 23567888999987554 4588999999999987642 11123457788888888899999999999988
Q ss_pred hhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhh--hHHHHHHhchhhHHHHHHHhcCCCCHHHH
Q 003146 499 IAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDV--YEELAEQLGDKYLNILVDITLSSTSENEK 576 (844)
Q Consensus 499 L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~--~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~ 576 (844)
++... +... ...++.+..++++.++.|+..|++++..+.... ..+....+.....+.|+.++. ++++++
T Consensus 229 l~~~~--~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~vr 299 (591)
T 2vgl_B 229 YNPKD--DREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS--GEPEVQ 299 (591)
T ss_dssp SCCCS--HHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT--SCHHHH
T ss_pred hCCCC--hHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc--CCccHH
Confidence 88653 2221 235788888899999999999999999886421 111111122234566776553 678999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHH
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLL 656 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~L 656 (844)
..|+.+|..+...++.. ... .+..+ +...+ ....++..++..|..++...+.+ .+++.|
T Consensus 300 ~~aL~~l~~i~~~~p~~----~~~-~~~~~---~~~~~-----d~~~Ir~~al~~L~~l~~~~nv~--------~iv~~L 358 (591)
T 2vgl_B 300 YVALRNINLIVQKRPEI----LKQ-EIKVF---FVKYN-----DPIYVKLEKLDIMIRLASQANIA--------QVLAEL 358 (591)
T ss_dssp HHHHHHHHHHHHHCCST----TTT-CTTTT---SCCTT-----SCHHHHHHHHHHHHHTCCSSTHH--------HHHHHH
T ss_pred HHHHHHHHHHHHhChHH----HHH-HHHhh---eeccC-----ChHHHHHHHHHHHHHHCChhhHH--------HHHHHH
Confidence 99999988885432211 000 11111 11101 01357889999999998755432 245667
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCC
Q 003146 657 VKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKE 736 (844)
Q Consensus 657 v~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~ 736 (844)
...+.+.++++|..+++++++++...+. .....++.|++++.+.+
T Consensus 359 ~~~l~~~d~~~r~~~v~aI~~la~~~~~-----------------------------------~~~~~v~~Ll~ll~~~~ 403 (591)
T 2vgl_B 359 KEYATEVDVDFVRKAVRAIGRCAIKVEQ-----------------------------------SAERCVSTLLDLIQTKV 403 (591)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTCHH-----------------------------------HHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhChh-----------------------------------HHHHHHHHHHHHHcccc
Confidence 8888888999999999999999964321 12346799999999999
Q ss_pred hhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhh
Q 003146 737 READETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLE-SGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDL 815 (844)
Q Consensus 737 ~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~-~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~l 815 (844)
+.++..+..++.++...... ....++..|.+.++ ...+.++..++|+|+.+........ ..-..+++-
T Consensus 404 ~~v~~e~i~~l~~ii~~~p~-------~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~----~~l~~l~~~ 472 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYPN-------KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD----ELLESFLEG 472 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSCS-------SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHH----HHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHCcc-------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHH----HHHHHHHHh
Confidence 99999999999998754310 01346888888885 5678999999999987643321100 001233334
Q ss_pred hhcCCCCchHHHHHHHHHHhh
Q 003146 816 AQNGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 816 l~~~~~~~~~~aa~~L~~l~~ 836 (844)
+.+.++.+|..+..++..+..
T Consensus 473 ~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 473 FHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp CSSSCHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHHh
Confidence 445566677776666666643
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.63 E-value=1e-11 Score=152.61 Aligned_cols=611 Identities=11% Similarity=0.051 Sum_probs=365.3
Q ss_pred HHHHHHhhhhccHHHHHHHHcCCC--hHHHHHHHHHHHHHHhcCC------cChHHHhhC-----CCHHHHHHHhCCCCc
Q 003146 173 IQEIVEERISLGIDDVMLQLKHGD--DKNLKFALLELRELISAKT------VDSEWINEA-----EIIAVLLNRLGSSKP 239 (844)
Q Consensus 173 I~~~~~~~~~~~i~~lv~~L~~~~--~~~~~~a~~~l~~L~~~~~------~~~~~i~~~-----~~~p~l~~lL~s~~~ 239 (844)
+++|.+.+...-...++..+...+ ......|...+.+...... ..+.|..-. .+-+.+++.|.++++
T Consensus 25 L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~ 104 (876)
T 1qgr_A 25 LERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY 104 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH
Confidence 334444322333566777776643 3333345555666543211 123453210 122337777887777
Q ss_pred hHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC---HHHHHHHHHHHHHccCCChhHHHHhh-hhCcHHHHHH
Q 003146 240 YNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD---VEEQREAVGLLLDLSDLPAVWRRIGR-IQGCIVMLVS 315 (844)
Q Consensus 240 ~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~---~~~~~~A~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~ 315 (844)
.+ ..+..++..++..... . -.-...++.++..+.++ ...|..++..|..++..-. ...+.. ....++.+..
T Consensus 105 ~~-~~~~~~l~~i~~~~~~-~--~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~ 179 (876)
T 1qgr_A 105 RP-SSASQCVAGIACAEIP-V--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQ 179 (876)
T ss_dssp SS-CHHHHHHHHHHHHHGG-G--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHhhCc-c--cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHH
Confidence 77 8888888888643100 0 00134677888888764 4578888888888875311 011111 1446777888
Q ss_pred hhcCC--ChHHHHHHHHHHHHhccC-Ccc-HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc-hhhhhhhhcC
Q 003146 316 MLSGN--DPVASHDAGKLLNALSSN-TQN-ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD-QSRASLGEDG 390 (844)
Q Consensus 316 lL~s~--d~~~~~~A~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g 390 (844)
.+.++ ++.++..|+.++.++... +.+ .........++.+.+.+.+.+..++..++.+|..+.... ..-.......
T Consensus 180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 259 (876)
T 1qgr_A 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259 (876)
T ss_dssp HHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTT
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88776 688999999999987642 111 001111124666677777778888989999999887532 1111112236
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc---------------------cHHHHHHcCChHHHHHHhhccC----C
Q 003146 391 AIEPLVRMFRVGKLEAKLSALNALQNLSLLAE---------------------NIQRLVISGIVSPLLQLLFSVT----S 445 (844)
Q Consensus 391 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---------------------~~~~i~~~g~v~~Lv~lL~~~~----~ 445 (844)
.++.++..+.+.++.++..|+..+.+++.... ....-.-...+|.++..|.... +
T Consensus 260 l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~ 339 (876)
T 1qgr_A 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccc
Confidence 78888888888888999999999988875320 0000001235677777775421 1
Q ss_pred cchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHh
Q 003146 446 VLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFL 525 (844)
Q Consensus 446 ~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll 525 (844)
+...++..+..+|..++..-.--.-...++.+...+.+.++.+|+.++.+|..++...+.......+ ...++.++..+
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 2345788888888888764311011245566667777889999999999999998765322232222 34789999999
Q ss_pred ccCCHHHHHHHHHHHHHhhhhhhHHH-HHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH-------------
Q 003146 526 METNANIRAAALNLVCTLSKDVYEEL-AEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNK------------- 591 (844)
Q Consensus 526 ~~~~~~v~~~A~~~L~~ls~~~~~~i-~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~------------- 591 (844)
.++++.+|..|++++..++...+..+ ....-...++.|+..+.+ ++.++..++.+|.++.....
T Consensus 418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 99999999999999999987654321 001112366778888875 37888888888888743100
Q ss_pred --HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhcc-------
Q 003146 592 --KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS------- 662 (844)
Q Consensus 592 --~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~------- 662 (844)
.....+ ...++.|..++....... ..++..+..++..+......+... .-...+|.+++.+..
T Consensus 496 ~~~l~~~~--~~il~~L~~~l~~~~~~~----~~~r~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~ 567 (876)
T 1qgr_A 496 TYCLSSSF--ELIVQKLLETTDRPDGHQ----NNLRSSAYESLMEIVKNSAKDCYP--AVQKTTLVIMERLQQVLQMESH 567 (876)
T ss_dssp CCSSTTTH--HHHHHHHHHHTTSCSSCS----TTHHHHHHHHHHHHHHTCCSTTHH--HHHHHHHHHHHHHHHHHTTTTS
T ss_pred chhhhHhH--HHHHHHHHHHHhCcCcch----hhHHHHHHHHHHHHHHHCchhhHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 000000 134566666665432111 124445555555544332222121 122456666666642
Q ss_pred ---C-C----HHHHHHHHHHHHHHhhcCc-cccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc
Q 003146 663 ---E-S----VVAKSSASISLAQLSQNSL-SLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE 733 (844)
Q Consensus 663 ---~-~----~~vk~~Aa~aL~~ls~~~~-~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~ 733 (844)
. + ++++..+..+++.+..... .. +.-.-...++.|+.++.
T Consensus 568 ~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~-------------------------------~~~~~~~l~~~l~~~l~ 616 (876)
T 1qgr_A 568 IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD-------------------------------ALQISDVVMASLLRMFQ 616 (876)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH-------------------------------HHTTHHHHHHHHHHHC-
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhChhh-------------------------------hhHHHHHHHHHHHHHHH
Confidence 1 2 4567788888888875432 10 11112346688888888
Q ss_pred CCC--hhhHHHHHHHHHhhhcccc--chhhhHHHHhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHHhhhh-hhHhhccc
Q 003146 734 GKE--READETVLGALASLLQDET--WESGSNYLAKLSGTQAIIKVLESG-NAKAQEKALWILERIFRIEE-HRVKYGES 807 (844)
Q Consensus 734 ~~~--~~v~~~A~~AL~~L~~~~~--~~~~~~~i~~~g~i~~lv~ll~~~-~~~~~~~A~~~L~~i~~~~~-~~~~~~~~ 807 (844)
+.. ..+++.++.++.+++.... ....... .++.++..+.+. ++.++..|.+++..+.+... .-..|-..
T Consensus 617 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 664 4789999999999986421 1111121 366778888765 89999999999999986532 11222222
Q ss_pred cchhHHhhhhc--CCCCchHHHHHHHHHHhh
Q 003146 808 AQVVLIDLAQN--GDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 808 a~~~Lv~ll~~--~~~~~~~~aa~~L~~l~~ 836 (844)
.-..|++.+.+ .+..+|..+..+++.+..
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 23467777776 456799999999988754
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.60 E-value=4.9e-12 Score=142.12 Aligned_cols=422 Identities=13% Similarity=0.116 Sum_probs=295.1
Q ss_pred cHHHHHHHHcCCChH-HHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCC--CCchHHHHHHHHHHHhHhcChhhH
Q 003146 184 GIDDVMLQLKHGDDK-NLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGS--SKPYNRLIMIQILRNLASENADYK 260 (844)
Q Consensus 184 ~i~~lv~~L~~~~~~-~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s--~~~~~~~~a~~~L~~L~~~~~~~~ 260 (844)
.|+.+...++++.-. +...|+..++.++++- +..+... ..|.++..|+. .|.++...++.+|.++........
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~-~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEVGIQ-AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHHHHH-THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHhhhh-hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 477888888777654 6677888899998642 3344443 58999999975 467778888999988866443210
Q ss_pred ------------------HHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-Ch-hHHHHhhhhCcHHHHHHhhcC
Q 003146 261 ------------------EKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PA-VWRRIGRIQGCIVMLVSMLSG 319 (844)
Q Consensus 261 ------------------~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~-~~~~i~~~~g~i~~Lv~lL~s 319 (844)
..+.+.+.++.|+.+|.. +...|..++..|..|+.. +. +++.|....++|+.|+.+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 112457899999999988 567899999999999865 44 788888657999999999999
Q ss_pred CChHHHHHHHHHHHHhccCCccHHHHH-HcCChHHHHHHhccCCH----HHHHHHHHHHHHhhcCc-hhhhhhhhcCchH
Q 003146 320 NDPVASHDAGKLLNALSSNTQNALHMA-EAGYFKPLVQYLKEGSD----MSKILMATALSRMELTD-QSRASLGEDGAIE 393 (844)
Q Consensus 320 ~d~~~~~~A~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~~L~~~~~----~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~ 393 (844)
+...+|..|+..|.+|+.+..+..+++ -+|+++.|+.++..... .+..-+..+|.+|...+ .++..+.+.|.++
T Consensus 178 ~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 178 SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 999999999999999998777655554 57999999999986433 56678999999998865 6899999999999
Q ss_pred HHHHHhhcCCHH------HHHH---HHHHHHHhhcC-------cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHH
Q 003146 394 PLVRMFRVGKLE------AKLS---ALNALQNLSLL-------AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAI 457 (844)
Q Consensus 394 ~Lv~lL~~~~~~------~~~~---A~~aL~nLs~~-------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~ 457 (844)
.|..+|+.+... ...+ ++.++.-|... +.|+..+.+.|++++|++++....- +..++..|+.+
T Consensus 258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~-p~~i~~~Al~t 336 (651)
T 3grl_A 258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV-PADILTETINT 336 (651)
T ss_dssp GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSC-CHHHHHHHHHH
T ss_pred HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCC-CHHHHHHHHHH
Confidence 999999754321 1222 44555555543 2367788899999999999887542 46688899999
Q ss_pred HHHHhcCh----hhhcc---------cchHHHHHHhhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhC--------
Q 003146 458 LARIAQSE----SILVN---------KDVAQQMLSLLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKEN-------- 515 (844)
Q Consensus 458 L~~l~~~~----~~l~~---------~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~-------- 515 (844)
++.+..+. ..+.. ...+..|+.++++ ....+|..++.+|.....++ ...+..+...
T Consensus 337 la~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N--~~~Q~~i~~~llp~~~~~ 414 (651)
T 3grl_A 337 VSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN--QKGQGEIVSTLLPSTIDA 414 (651)
T ss_dssp HHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTSSCCCCC
T ss_pred HHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC--HHHHHHHHHhcCCccccc
Confidence 99988774 11111 1234445555544 45779999999999998876 5555555432
Q ss_pred --Cc---HHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-----------hhhHHHHHHHhcCCCCHHHHHHH
Q 003146 516 --GA---IHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-----------DKYLNILVDITLSSTSENEKAAA 579 (844)
Q Consensus 516 --g~---i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-----------~~~l~~Lv~lL~~~~~~~~~~~a 579 (844)
+. -..|..-+-+.++----.|+.++..+-.+.++.-...+. ...++.+...|....++.++..-
T Consensus 415 ~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgy 494 (651)
T 3grl_A 415 TGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGL 494 (651)
T ss_dssp TTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHH
T ss_pred CCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHH
Confidence 10 123444455556643344666676776665533222121 22577788888766677776665
Q ss_pred HHHHhcCCCCCHHHHHHHHhCC-ChHHHHHHhhc
Q 003146 580 VGILSNLPVSNKKATELLKKTN-LLPSLISAATS 612 (844)
Q Consensus 580 ~~~L~~L~~~~~~~~~~l~~~~-~v~~L~~ll~~ 612 (844)
...|+.--..++.....+..++ .++.|+..+..
T Consensus 495 L~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 495 LMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred HHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHh
Confidence 5555544455777666666665 58999988754
No 51
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=6.5e-13 Score=169.31 Aligned_cols=596 Identities=12% Similarity=0.096 Sum_probs=364.2
Q ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcC--hHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhH
Q 003146 183 LGIDDVMLQLKHGDDKNLKFALLELRELISAKTVD--SEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYK 260 (844)
Q Consensus 183 ~~i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~--~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~ 260 (844)
..+..++..+.+.+......|..++.+....+... .... ...+|.+.+.|.+.++.+|..|..+|+.++.......
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~--~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 34778888888888877777888888777654321 1111 1257888899999999999999999999985433211
Q ss_pred HHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-Chh------HHHHhhhhCcHHHHHHhhc-CCChHHHHHHHHH
Q 003146 261 EKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAV------WRRIGRIQGCIVMLVSMLS-GNDPVASHDAGKL 331 (844)
Q Consensus 261 ~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~------~~~i~~~~g~i~~Lv~lL~-s~d~~~~~~A~~~ 331 (844)
+ ...++.++..|.+ +...|..|+..|..++.. +.. .... ....+|.|+..+. ++++.++..|+.+
T Consensus 84 --~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 84 --V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp --H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 0 1135667777766 446788888888877643 111 1111 1557899999998 5889999999999
Q ss_pred HHHhccC-Cc-cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCC-HHHHH
Q 003146 332 LNALSSN-TQ-NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGK-LEAKL 408 (844)
Q Consensus 332 L~nLs~~-~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~ 408 (844)
|..++.. .+ -... -...++.++..|.+.+..+|..++.+|+.++...... + -...++.|+..|.+.+ ...+.
T Consensus 158 l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~ 232 (1230)
T 1u6g_C 158 MADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTR 232 (1230)
T ss_dssp HHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCT
T ss_pred HHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHH
Confidence 9998742 11 1110 1234566777778888889999999999988643221 1 1346888888887653 35667
Q ss_pred HHHHHHHHhhcCcccHHHHH--HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh-hh--cccchHHHHHHhhc-
Q 003146 409 SALNALQNLSLLAENIQRLV--ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES-IL--VNKDVAQQMLSLLN- 482 (844)
Q Consensus 409 ~A~~aL~nLs~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~-~l--~~~~~i~~Lv~lL~- 482 (844)
.++.++..++..... .+. -..++|.++..+.+.+ ..+++.+..++..++..-. .+ .-...++.++..+.
T Consensus 233 ~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~---~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDD---DELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp THHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCC---TTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCC
Confidence 788888888754221 111 1356788888876543 3478888888888876421 00 00122333333221
Q ss_pred ------------------------------------cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc
Q 003146 483 ------------------------------------LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM 526 (844)
Q Consensus 483 ------------------------------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~ 526 (844)
..++.+|..|+.+|..++...+ ......+ ...++.++..+.
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~--~~l~~~l~~~l~ 384 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY--KTVSPALISRFK 384 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH--TTTHHHHHSTTS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHH--HHHHHHHHHHcC
Confidence 1134578899999998887542 1122222 446788888888
Q ss_pred cCCHHHHHHHHHHHHHhhhhhh------------------HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 003146 527 ETNANIRAAALNLVCTLSKDVY------------------EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPV 588 (844)
Q Consensus 527 ~~~~~v~~~A~~~L~~ls~~~~------------------~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 588 (844)
+.++.+|..+..++..+..... .......-+..++.+.+.+. +.+..++..++.+|+.+..
T Consensus 385 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 385 EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH
Confidence 8889999999998876654321 01111222335555666676 4667777777777776633
Q ss_pred CCHH-HHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHH-HHHHHHHcCCHHHHHHHhccCCHH
Q 003146 589 SNKK-ATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKK-LQQYSVQHGVIRLLVKLLSSESVV 666 (844)
Q Consensus 589 ~~~~-~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~ 666 (844)
..+. ... .-...++.+...+.+.+. ...++..++..+..+.....++ ... .-..++|.|+..+++.+..
T Consensus 464 ~~~~~l~~--~l~~ll~~l~~~L~d~~~-----~~~v~~~a~~~l~~~~~~~~~~~~~~--~l~~llp~L~~~l~d~~~~ 534 (1230)
T 1u6g_C 464 VLPGALTQ--HIPVLVPGIIFSLNDKSS-----SSNLKIDALSCLYVILCNHSPQVFHP--HVQALVPPVVACVGDPFYK 534 (1230)
T ss_dssp HSTTTTGG--GHHHHHHHHHHHTTCSSS-----CHHHHHHHHHHHHHHHHSSCGGGGHH--HHTTTHHHHHHHHTCSSHH
T ss_pred HchhhhHH--HHHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHHHHhCCHHHHHh--HHHHHHHHHHHHHcccchH
Confidence 2110 000 012345677777766542 1257778888888775432333 221 2247899999999999999
Q ss_pred HHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhh--cCCChhhHHHHH
Q 003146 667 AKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVL--EGKEREADETVL 744 (844)
Q Consensus 667 vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL--~~~~~~v~~~A~ 744 (844)
++..|..+++.+...-.... .+. ...+.-.-...++.++..| .+.++++|..|+
T Consensus 535 v~~~al~~l~~l~~~~~~~~-----------------------~~~-~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~ 590 (1230)
T 1u6g_C 535 ITSEALLVTQQLVKVIRPLD-----------------------QPS-SFDATPYIKDLFTCTIKRLKAADIDQEVKERAI 590 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCSS-----------------------SCC-CCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcc-----------------------ccc-ccchHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 98888888888774311100 000 0001111123567788888 677889999999
Q ss_pred HHHHhhhcccc--chh----hhHHHHh-------------------------------cCChHHHHHHhhcCCHHHHHHH
Q 003146 745 GALASLLQDET--WES----GSNYLAK-------------------------------LSGTQAIIKVLESGNAKAQEKA 787 (844)
Q Consensus 745 ~AL~~L~~~~~--~~~----~~~~i~~-------------------------------~g~i~~lv~ll~~~~~~~~~~A 787 (844)
.+|+.++.... +.. -...+.+ ...++.+...+.+.+..+|.+|
T Consensus 591 ~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a 670 (1230)
T 1u6g_C 591 SCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGT 670 (1230)
T ss_dssp HHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999885421 110 0111110 1124445556667889999999
Q ss_pred HHHHHHHHhhhhhhHhhccccchh----HHhhhhcCCCCchHHHHHHHHHHh
Q 003146 788 LWILERIFRIEEHRVKYGESAQVV----LIDLAQNGDSRLKPAVAKLLAQLE 835 (844)
Q Consensus 788 ~~~L~~i~~~~~~~~~~~~~a~~~----Lv~ll~~~~~~~~~~aa~~L~~l~ 835 (844)
+.++.+++..... .+....-.+ +..++.+.|..+...+-.+|..+-
T Consensus 671 ~~al~~l~~~~~~--~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~ 720 (1230)
T 1u6g_C 671 LSALDILIKNYSD--SLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720 (1230)
T ss_dssp HHHHHHHHHHCCT--TCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccc--cCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 9999999865311 111011112 223455677778888888888774
No 52
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.55 E-value=1.3e-12 Score=166.61 Aligned_cols=511 Identities=15% Similarity=0.088 Sum_probs=318.5
Q ss_pred CHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHh
Q 003146 226 IIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIG 304 (844)
Q Consensus 226 ~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~ 304 (844)
.++.+++.+.+++.++|..|...|.+...........-.....++.+++.|.+ +.+.|..|+..|..++..-.. ..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~- 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV- 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH-
Confidence 36778888889999999999888877643321100000011246677888876 567899999999998764221 111
Q ss_pred hhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccH------HHHHHcCChHHHHHHhc-cCCHHHHHHHHHHHHHhh
Q 003146 305 RIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNA------LHMAEAGYFKPLVQYLK-EGSDMSKILMATALSRME 377 (844)
Q Consensus 305 ~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~------~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~Ls 377 (844)
...++.|+..+.++++.++..|+.+|..++..-... ..-.-...++.|++.+. +++..++..+..+|..+.
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 346778888888888899999999998887421111 11112357888889998 477888889999999887
Q ss_pred cC--chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHH
Q 003146 378 LT--DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPAS 455 (844)
Q Consensus 378 ~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~ 455 (844)
.. ...... -...++.|+..|.++++.+|..|+.+|..++...+.. + -...++.++..|....+ ...+..++
T Consensus 163 ~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~--~~~r~~a~ 235 (1230)
T 1u6g_C 163 SRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDS--MSTTRTYI 235 (1230)
T ss_dssp HHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS--SCSCTTHH
T ss_pred HHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCc--hhHHHHHH
Confidence 42 111111 1346778888888889999999999999999764321 1 23457888888876543 23456777
Q ss_pred HHHHHHhcCh-hhhc--ccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-----
Q 003146 456 AILARIAQSE-SILV--NKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME----- 527 (844)
Q Consensus 456 ~~L~~l~~~~-~~l~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~----- 527 (844)
.++..++... ..+. -...++.++..+...++.+|+.++.++..++...+. .....+ ...++.++..+..
T Consensus 236 ~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~l--~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK-EVYPHV--STIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC-CCHHHH--HHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH-HHHHhH--HHHHHHHHHHhCCCCCCC
Confidence 7777776542 2111 246788999999888899999999999988876431 111111 1123333332210
Q ss_pred --------------------------------CCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHH
Q 003146 528 --------------------------------TNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENE 575 (844)
Q Consensus 528 --------------------------------~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~ 575 (844)
...++|..|+.++..++...++.+...+ ...++.++..+. +.+..+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~-d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFK-EREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTS-CSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcC-CCchHH
Confidence 1125788999999888764443233333 235566666665 345677
Q ss_pred HHHHHHHHhcCCCC------------------CH-HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhcc
Q 003146 576 KAAAVGILSNLPVS------------------NK-KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 576 ~~~a~~~L~~L~~~------------------~~-~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~ 636 (844)
+..+..++..+... .. ..... .-...++.+...+++.+. .++..++.+|..+.
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~l~~~l~~~~~-------~vr~~~~~~L~~l~ 462 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-QVPNIVKALHKQMKEKSV-------KTRQCCFNMLTELV 462 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHH-HTTHHHHHHHHHTTCSCH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH-HhhHHHHHHHHHhccCCH-------HHHHHHHHHHHHHH
Confidence 76666665444210 00 00011 113345555555665442 35667777777665
Q ss_pred CCCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcc
Q 003146 637 DPSDKKLQQYSVQHGVIRLLVKLLSSES--VVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVK 714 (844)
Q Consensus 637 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~ 714 (844)
......... .-..++|.+.+.|.+.. ..++..++.+++.+......
T Consensus 463 ~~~~~~l~~--~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~------------------------------ 510 (1230)
T 1u6g_C 463 NVLPGALTQ--HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP------------------------------ 510 (1230)
T ss_dssp HHSTTTTGG--GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG------------------------------
T ss_pred HHchhhhHH--HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH------------------------------
Confidence 431111100 01246788899998775 48898999888887642111
Q ss_pred cchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccc---------cchhhhHHHHhcCChHHHHHHh--hcCCHHH
Q 003146 715 STFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE---------TWESGSNYLAKLSGTQAIIKVL--ESGNAKA 783 (844)
Q Consensus 715 ~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~---------~~~~~~~~i~~~g~i~~lv~ll--~~~~~~~ 783 (844)
..+.-.-...++.|+..+.+.+..++..|+.++..++..- ........ -++.++..+ .+.++.+
T Consensus 511 ~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~-----ll~~ll~~l~~~d~~~~v 585 (1230)
T 1u6g_C 511 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD-----LFTCTIKRLKAADIDQEV 585 (1230)
T ss_dssp GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHH-----HHHHHHHHHSCSSSCHHH
T ss_pred HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH-----HHHHHHHHHhccCCCHHH
Confidence 0011112457899999999999999888988888887321 11111222 256677777 6678899
Q ss_pred HHHHHHHHHHHHhh
Q 003146 784 QEKALWILERIFRI 797 (844)
Q Consensus 784 ~~~A~~~L~~i~~~ 797 (844)
|..|+.+++.+...
T Consensus 586 r~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 586 KERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.50 E-value=3.7e-12 Score=134.17 Aligned_cols=257 Identities=15% Similarity=0.056 Sum_probs=196.3
Q ss_pred HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHH
Q 003146 429 ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNV 508 (844)
Q Consensus 429 ~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 508 (844)
+.+.++.|+..|.+++ ..++..|+..|.++. ..+.++.|+.++.+.++.+|..|+++|..+.... ...
T Consensus 21 ~~~~i~~L~~~L~~~~---~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN---SLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS---HHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTH
T ss_pred HHhhHHHHHHHHHcCC---HHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccc
Confidence 5678999999998654 457889999999884 4567899999999999999999999999986442 111
Q ss_pred HHHHHhCCcHHHHH-HHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 003146 509 RRKMKENGAIHLLL-PFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLP 587 (844)
Q Consensus 509 ~~~i~~~g~i~~Lv-~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 587 (844)
. ..++.|. .++.++++.+|..|+++|..+....+.. .+..++.|+..+. ++++.++..++.+|+++.
T Consensus 89 ~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 89 D------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAF-DKSTNVRRATAFAISVIN 156 (280)
T ss_dssp H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC-
T ss_pred h------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcC
Confidence 1 1233444 2467888999999999998886432211 1225677788777 578899999999999985
Q ss_pred CCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 003146 588 VSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVA 667 (844)
Q Consensus 588 ~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 667 (844)
. .++++.|+.++.+++. .++..++.+|..+... ++ .++|.|..+++++++.+
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~-------~vr~~a~~aL~~~~~~-~~---------~~~~~L~~~l~d~~~~v 208 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNG-------DVRNWAAFAININKYD-NS---------DIRDCFVEMLQDKNEEV 208 (280)
T ss_dssp -------------CCHHHHHHHHTCSSH-------HHHHHHHHHHHHHTCC-CH---------HHHHHHHHHTTCSCHHH
T ss_pred C-----------HHHHHHHHHHHcCCCH-------HHHHHHHHHHHhhccC-cH---------HHHHHHHHHhcCCCHHH
Confidence 4 3589999999987653 5788999999887532 22 35688999999999999
Q ss_pred HHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHH
Q 003146 668 KSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGAL 747 (844)
Q Consensus 668 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL 747 (844)
|..|+.+|+++.. ..+++.|+..|.+++ ++..|+.||
T Consensus 209 R~~A~~aL~~~~~-----------------------------------------~~~~~~L~~~l~d~~--vr~~a~~aL 245 (280)
T 1oyz_A 209 RIEAIIGLSYRKD-----------------------------------------KRVLSVLCDELKKNT--VYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHHHTTC-----------------------------------------GGGHHHHHHHHTSSS--CCHHHHHHH
T ss_pred HHHHHHHHHHhCC-----------------------------------------HhhHHHHHHHhcCcc--HHHHHHHHH
Confidence 9999999999872 236799999998754 999999999
Q ss_pred HhhhccccchhhhHHHHhcCChHHHHHHh-hcCCHHHHHHHHHHHHH
Q 003146 748 ASLLQDETWESGSNYLAKLSGTQAIIKVL-ESGNAKAQEKALWILER 793 (844)
Q Consensus 748 ~~L~~~~~~~~~~~~i~~~g~i~~lv~ll-~~~~~~~~~~A~~~L~~ 793 (844)
..+.... .++.|.+++ .+.++++...+...|++
T Consensus 246 ~~i~~~~-------------~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 246 GELGDKT-------------LLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHCCGG-------------GHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HhcCchh-------------hhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 9987643 588889988 45677788887777654
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=3.4e-11 Score=141.26 Aligned_cols=478 Identities=14% Similarity=0.085 Sum_probs=318.4
Q ss_pred cHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH
Q 003146 268 SLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA 346 (844)
Q Consensus 268 ~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~ 346 (844)
+....++++.+ +.+.++.+.-.+..++.... +.. .-++..|.+-|.++++.++..|+.+|.++... .+.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~--e~~---~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~ 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQ--DVH---LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH--HHH---HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc--HHH---HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH
Confidence 44556667766 56677777667777766532 111 12456788888999999999999999998731 233
Q ss_pred HcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHH
Q 003146 347 EAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQR 426 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~ 426 (844)
...++.+.+.|.+.++.+|..|+.++.++..... ..+ .+.++.+..+|.+.++.++..|+.+|..++........
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3567889999999999999999999999876421 111 26778888999999999999999999999876322111
Q ss_pred HHHcCChHHHHHHhhcc------------CCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhc------cCChHH
Q 003146 427 LVISGIVSPLLQLLFSV------------TSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLN------LCSPTI 488 (844)
Q Consensus 427 i~~~g~v~~Lv~lL~~~------------~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~------~~~~~~ 488 (844)
.. ...+|.++.+|.+. ...++..+...+.+|..++..+.-. .....+.|..++. +.++.+
T Consensus 216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-SEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-HHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHhccccccchHHHH
Confidence 11 36788898888751 0112456778888898887654211 1223444445443 234578
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhc
Q 003146 489 QYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITL 568 (844)
Q Consensus 489 ~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~ 568 (844)
...|++++..+... +..+. .+++.|..++.++++++|..|+..|..+....+..+ ......++..+.
T Consensus 294 ~~ea~~~i~~l~~~---~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~ 360 (618)
T 1w63_A 294 LYETVLTIMDIKSE---SGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLK 360 (618)
T ss_dssp HHHHHHHHHHSCCC---HHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGG
T ss_pred HHHHHHHHHhcCCC---HHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHcc
Confidence 89999999988543 22222 367889999999999999999999998876655432 224556777777
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCC--CCHHHHHH
Q 003146 569 SSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDP--SDKKLQQY 646 (844)
Q Consensus 569 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~--~~~~~~~~ 646 (844)
+++..++..|..+|..+.... .... +++.|..++.+.+ .+++..++.++++++.. .+..|
T Consensus 361 -d~d~~Ir~~alelL~~l~~~~-nv~~------iv~eL~~~l~~~d-------~e~r~~~v~~I~~la~k~~~~~~~--- 422 (618)
T 1w63_A 361 -DLDVSIKRRAMELSFALVNGN-NIRG------MMKELLYFLDSCE-------PEFKADCASGIFLAAEKYAPSKRW--- 422 (618)
T ss_dssp -SSCHHHHHHHHHHHHHHCCSS-STHH------HHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHSSCCCHHH---
T ss_pred -CCChhHHHHHHHHHHHHcccc-cHHH------HHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHhCccHHH---
Confidence 477899999999998887632 1111 2466777776543 26788899999888764 23322
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCch
Q 003146 647 SVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVS 726 (844)
Q Consensus 647 i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~ 726 (844)
.++.|+++|+.....++..+...+..+....+.++ ..++.
T Consensus 423 -----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~-----------------------------------~~~v~ 462 (618)
T 1w63_A 423 -----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH-----------------------------------AYTVQ 462 (618)
T ss_dssp -----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH-----------------------------------HHHHH
T ss_pred -----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH-----------------------------------HHHHH
Confidence 37889999988777777777788888776555432 22567
Q ss_pred HHHHhhcC--CChhhHHHHHHHHHhhhcccc---chh-hhHHHHhcCChHHHHHHhh--cCCHHHHHHHHHHHHHHHhhh
Q 003146 727 PLIQVLEG--KEREADETVLGALASLLQDET---WES-GSNYLAKLSGTQAIIKVLE--SGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 727 ~Lv~lL~~--~~~~v~~~A~~AL~~L~~~~~---~~~-~~~~i~~~g~i~~lv~ll~--~~~~~~~~~A~~~L~~i~~~~ 798 (844)
.|+..+.+ ..+.....+++.|+..+..-. .+. ....+.....+..+..++. ..++.+|..+++++.+++...
T Consensus 463 ~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~ 542 (618)
T 1w63_A 463 RLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF 542 (618)
T ss_dssp HHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhC
Confidence 88888874 344555678888888764210 000 0000000113444555554 578999999999999998642
Q ss_pred hhhHhhccccchhHHhhhhcCCCCchHHHHHHHHHHhh
Q 003146 799 EHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 799 ~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~ 836 (844)
.. ........|-....+.|+++|..|..++.-+..
T Consensus 543 ~~---~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 543 TC---TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp SS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred cc---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 10 000111233444557888999999999887754
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=7.5e-11 Score=138.32 Aligned_cols=515 Identities=12% Similarity=0.043 Sum_probs=323.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHh
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMA 264 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 264 (844)
+..+-..+++.+......++..+..++.-. ++-.| ..+-.++++.+++...+...-.++..++..+++-. +
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~~~-----~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~--~- 106 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPAHF-----GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH--L- 106 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCCGG-----GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH--H-
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCCcc-----hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH--H-
Confidence 344455566655555556666655544322 11111 34556677777777777666667777764443211 1
Q ss_pred cCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCccH
Q 003146 265 NVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQNA 342 (844)
Q Consensus 265 ~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~~ 342 (844)
-.+..+.+-|.+ +...|..|+.+|.++.. ++ +. ...++.+..+|+++++.++..|+.++.++.. +++.
T Consensus 107 --l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~--~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~- 176 (618)
T 1w63_A 107 --LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC--RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL- 176 (618)
T ss_dssp --HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-
T ss_pred --HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-
Confidence 135667777777 45688899999998863 22 22 4567889999999999999999999999975 3332
Q ss_pred HHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchh-hhhhhhcCchHHHHHHhhc---------------CCHHH
Q 003146 343 LHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQS-RASLGEDGAIEPLVRMFRV---------------GKLEA 406 (844)
Q Consensus 343 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~---------------~~~~~ 406 (844)
+ .+.++.+.++|.+.++.++..|+.+|..++..+.. ...+ ...+|.|+.+|.+ .++-.
T Consensus 177 ---v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 177 ---M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp ---G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred ---H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 1 26778888889888999999999999998875422 1222 2678888888864 36778
Q ss_pred HHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc---CCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhcc
Q 003146 407 KLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV---TSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNL 483 (844)
Q Consensus 407 ~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~ 483 (844)
+...+.+|..++...... .....+.|..++... .+....+.-.|+.++..+...+... ..++..|..++.+
T Consensus 251 q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~--~~a~~~L~~~L~~ 324 (618)
T 1w63_A 251 QVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR--VLAINILGRFLLN 324 (618)
T ss_dssp HHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH--HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHhC
Confidence 888999999998653221 123445555555421 1112346677888888775543321 2467888899999
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh-HHHHHHhchhhHHH
Q 003146 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY-EELAEQLGDKYLNI 562 (844)
Q Consensus 484 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~-~~i~~~l~~~~l~~ 562 (844)
+++.+|+.|+.+|..++... + ..+ ......++.++.+++..+|..|..+|..++.... .. .+..
T Consensus 325 ~d~~vr~~aL~~L~~i~~~~--p---~~~--~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~e 389 (618)
T 1w63_A 325 NDKNIRYVALTSLLKTVQTD--H---NAV--QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKE 389 (618)
T ss_dssp SSTTTHHHHHHHHHHHHHHH--H---HHH--GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHH
T ss_pred CCCchHHHHHHHHHHHHhhC--H---HHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHH
Confidence 99999999999999998652 1 122 2256788899999999999999999999876433 22 3455
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHH
Q 003146 563 LVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKK 642 (844)
Q Consensus 563 Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~ 642 (844)
|+..+.+ .+.+.+..+..+++.++...+....+. ++.|+++++....... ..+.......+.+ .++
T Consensus 390 L~~~l~~-~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~~~v~---~~~~~~l~~ii~~-----~p~ 455 (618)
T 1w63_A 390 LLYFLDS-CEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAGSYVR---DDAVPNLIQLITN-----SVE 455 (618)
T ss_dssp HHHHHHH-CCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTGGGSC---SSHHHHHHHHHHH-----SCS
T ss_pred HHHHHHh-CCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhccchhH---HHHHHHHHHHHhc-----Chh
Confidence 6666653 667888888888888865322222222 6788888876542221 1222222222222 233
Q ss_pred HHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhh
Q 003146 643 LQQYSVQHGVIRLLVKLLSSE--SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLV 720 (844)
Q Consensus 643 ~~~~i~~~g~i~~Lv~lL~~~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~ 720 (844)
.+. .+++.|.+++.+. .....+.++|+||.++..-.+- .+.....+.+.
T Consensus 456 l~~-----~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~------------------------~~~~~~~~~~~ 506 (618)
T 1w63_A 456 MHA-----YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSG------------------------QCEEEEPIQVT 506 (618)
T ss_dssp THH-----HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTC------------------------CCSSSCCCCCC
T ss_pred HHH-----HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccc------------------------ccccccccCCC
Confidence 332 2456688888752 3333446999999988532110 00000000000
Q ss_pred hcCCchHHHHhhc--CCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHH-hhcCCHHHHHHHHHHHHHHHh
Q 003146 721 KAGAVSPLIQVLE--GKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKV-LESGNAKAQEKALWILERIFR 796 (844)
Q Consensus 721 ~~~ai~~Lv~lL~--~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~l-l~~~~~~~~~~A~~~L~~i~~ 796 (844)
...+++.|..++. ..++.++..++.|+..+..... + ... -+..++.. .++.++++|.+|...+.-+..
T Consensus 507 ~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~-~-~~~------~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 507 EDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT-C-TVN------RIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS-S-CHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc-c-hHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1124455666664 5688999999999998886432 1 001 13333333 367899999999987654443
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.49 E-value=6.8e-12 Score=132.13 Aligned_cols=259 Identities=11% Similarity=0.064 Sum_probs=196.8
Q ss_pred HhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCcc
Q 003146 263 MANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQN 341 (844)
Q Consensus 263 i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~ 341 (844)
..+.++++.|+..|.+ +...|..|++.|..+. . .++++.|+.+|.++++.++..|+++|.++...+..
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~-~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------G-QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------C-chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3456789999999988 5678999999998764 2 56899999999999999999999999998754332
Q ss_pred HHHHHHcCChHHHH-HHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 342 ALHMAEAGYFKPLV-QYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 342 ~~~i~~~g~i~~Lv-~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
... .++.|. .++.++++.++..++.+|+++...+.. ....+++.|+.++.++++.++..|+.+|.++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 111 122333 235677889999999999998743210 123568999999999999999999999998763
Q ss_pred cccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 421 AENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 421 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
.++++.|+.++.+++ ..++..++++|..+... ....++.|+.+++++++.+|..|+.+|..+.
T Consensus 158 ---------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPN---GDVRNWAAFAININKYD-----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ----------CCHHHHHHHHTCSS---HHHHHHHHHHHHHHTCC-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHcCCC---HHHHHHHHHHHHhhccC-----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 358999999998665 45889999999988532 3457889999999999999999999999886
Q ss_pred cCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHH
Q 003146 501 AHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAV 580 (844)
Q Consensus 501 ~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~ 580 (844)
.. ..++.|+.++.+++ +|..|..+|..+.. +..++.|..++.++.+.+....+.
T Consensus 221 ~~-------------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 221 DK-------------RVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp CG-------------GGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred CH-------------hhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 32 37899999998755 88888888876632 236778888888766666665555
Q ss_pred HHHhc
Q 003146 581 GILSN 585 (844)
Q Consensus 581 ~~L~~ 585 (844)
..|.+
T Consensus 275 ~~l~~ 279 (280)
T 1oyz_A 275 DKLKR 279 (280)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 55543
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.36 E-value=2.3e-11 Score=122.18 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=159.2
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASL 386 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (844)
.+.++.|+.+|+++++.++..|+..|..+.. .++++.|++.|.+++..++..++.+|+.+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 7789999999999999999999999987643 368999999999999999999999998864
Q ss_pred hhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh
Q 003146 387 GEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES 466 (844)
Q Consensus 387 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~ 466 (844)
..++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.++.+.+ ..++..++.+|.++.
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~---- 140 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED---WFVRIAAAFALGEIG---- 140 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHC----
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC----
Confidence 34688999999999999999999999998863 357889999986654 458899999999883
Q ss_pred hhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhh
Q 003146 467 ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKD 546 (844)
Q Consensus 467 ~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~ 546 (844)
....++.|..+++++++.+|..++.+|..+... .+++.|..++.++++.+|..|..+|..+...
T Consensus 141 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 141 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGGE-------------RVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-------------HHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-------------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 346789999999999999999999999998532 2688899999999999999999999887654
Q ss_pred h
Q 003146 547 V 547 (844)
Q Consensus 547 ~ 547 (844)
.
T Consensus 205 ~ 205 (211)
T 3ltm_A 205 N 205 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.34 E-value=1.6e-11 Score=123.23 Aligned_cols=193 Identities=20% Similarity=0.242 Sum_probs=154.3
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhcc
Q 003146 557 DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 557 ~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~ 636 (844)
+..++.|+..|. +++..++..++..|+.+.. .++++.|+.++.+++. .++..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~-------~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA-------WVRRAAADALGQIG 78 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCH-------HHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCH-------HHHHHHHHHHHhhC
Confidence 447888999998 5789999999999988743 3678999999987642 57789999998875
Q ss_pred CCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccc
Q 003146 637 DPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKST 716 (844)
Q Consensus 637 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~ 716 (844)
. .+.+|.|+++|+++++.+|..|+.+|+++..
T Consensus 79 ~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------------------------------ 110 (211)
T 3ltm_A 79 D------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------------------------------ 110 (211)
T ss_dssp C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred C------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------------------
Confidence 3 2567999999999999999999999999862
Q ss_pred hHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 003146 717 FCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFR 796 (844)
Q Consensus 717 ~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~ 796 (844)
.++++.|+.+|.++++.||..|+.+|..+.... +++.|.++++++++.+|..|+++|.++-.
T Consensus 111 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-------------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 111 -----ERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-------------AVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-------------GHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-------------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 236799999999999999999999999986543 68899999999999999999999987731
Q ss_pred hhhhhHhhccccchhHHhhhhcCCCCchHHHHHHHHHHhhhhcCCCC
Q 003146 797 IEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSSY 843 (844)
Q Consensus 797 ~~~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~~~~~s~~ 843 (844)
..+...|.++++++++.+|..|..+|..+...++..++
T Consensus 173 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~~ 210 (211)
T 3ltm_A 173 ---------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHHHH 210 (211)
T ss_dssp ---------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----------
T ss_pred ---------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 23346889999999999999999999999877655443
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=5.3e-11 Score=118.45 Aligned_cols=185 Identities=19% Similarity=0.212 Sum_probs=158.9
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhh
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASL 386 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 386 (844)
.+..+.++.+|+++|+.++..|+.+|..+.. .+.++.|++.|.++++.++..++.+|+.+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 6778999999999999999999999987653 367899999999999999999999998864
Q ss_pred hhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh
Q 003146 387 GEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSES 466 (844)
Q Consensus 387 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~ 466 (844)
..++++.|+.+|.++++.++..|+.+|.++.. ..+++.|+.+|.+.+ ..++..++.+|.++.
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~---- 135 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED---WFVRIAAAFALGEIG---- 135 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHT----
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhC----
Confidence 34688999999999999999999999998853 347888999987554 468899999999884
Q ss_pred hhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 467 ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 467 ~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
....++.|..++.+.++.+|..|+.+|..+... .+++.|..++.++++.+|..|..+|..+.
T Consensus 136 ---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-------------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGGE-------------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-------------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-------------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998422 26888999999999999999999997764
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.31 E-value=5.8e-11 Score=134.25 Aligned_cols=388 Identities=13% Similarity=0.116 Sum_probs=243.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcC--CHHHHHHHHHHHHHhhcCcc-cH-H--
Q 003146 352 KPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVG--KLEAKLSALNALQNLSLLAE-NI-Q-- 425 (844)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~-~~-~-- 425 (844)
..++..+.+++..+|..|-..|..+...+ ..+.+..|+.++.+. ++.+|..|+..|.|+..... .. .
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 34555556777888888888887755321 135667788888775 57899999999999875421 00 0
Q ss_pred ----H----HHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh-hhhcccchHHHHHHhhccC--ChHHHHHHHH
Q 003146 426 ----R----LVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE-SILVNKDVAQQMLSLLNLC--SPTIQYHLLH 494 (844)
Q Consensus 426 ----~----i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~-~~l~~~~~i~~Lv~lL~~~--~~~~~~~a~~ 494 (844)
. -....+-..|+..|.+.+. .+ ..++.++..++... ..-.-.+.++.|+..+.++ ++.+++.++.
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~---~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETY---RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCS---SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCc---hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 0 0112223457777766543 35 67788888887653 1112246899999999888 8999999999
Q ss_pred HHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccC--CHHHHHHHHHHHHHhhhhhhHHHHHH-hchhhHHHHHHHhcCCC
Q 003146 495 ALNSIAAHSSASNVRRKMKENGAIHLLLPFLMET--NANIRAAALNLVCTLSKDVYEELAEQ-LGDKYLNILVDITLSST 571 (844)
Q Consensus 495 ~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~A~~~L~~ls~~~~~~i~~~-l~~~~l~~Lv~lL~~~~ 571 (844)
+|..++...........+ ...++.+..++.+. ++.+|..|++++.++........... .....++.+...+. +.
T Consensus 153 ~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~ 229 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CP 229 (462)
T ss_dssp HHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-CS
T ss_pred HHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CC
Confidence 999998643111111111 13678888999988 68999999999988654322111100 01112444444444 56
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC------------
Q 003146 572 SENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS------------ 639 (844)
Q Consensus 572 ~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~------------ 639 (844)
+.+++..++.+|..+....+..-......+.++.++..+.+.+ ..++..++..+..++...
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-------DEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-------HHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------hHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7888988888888775432221000111155666666665543 246667777666654310
Q ss_pred --------CHHHHHHHHHcCCHHHHHHHhcc-------CCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcC
Q 003146 640 --------DKKLQQYSVQHGVIRLLVKLLSS-------ESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFC 704 (844)
Q Consensus 640 --------~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c 704 (844)
.....+. .-..++|.+.+.+.. +++.+|..|+.+|..++..-..
T Consensus 303 ~~~~~~~~~~~~~~~-~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-------------------- 361 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKG-ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------------- 361 (462)
T ss_dssp SSSCSSCCCCCHHHH-HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--------------------
T ss_pred cCCCccchhHHHHHH-HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--------------------
Confidence 0000000 013467777777743 2457899999999998854221
Q ss_pred cccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHH
Q 003146 705 EVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQ 784 (844)
Q Consensus 705 ~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~ 784 (844)
. +-...++.+...|.+.++.+|++|+.+|+.++.....+.-...+ ...++.++..+.++++.+|
T Consensus 362 ------------~--~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 362 ------------D--IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp ------------T--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHH
T ss_pred ------------H--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHH
Confidence 0 01235577778888999999999999999999743211000111 3457789999999999999
Q ss_pred HHHHHHHHHHHhh
Q 003146 785 EKALWILERIFRI 797 (844)
Q Consensus 785 ~~A~~~L~~i~~~ 797 (844)
..|+|+|.++...
T Consensus 426 ~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 426 DTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.23 E-value=4.4e-10 Score=126.95 Aligned_cols=392 Identities=10% Similarity=0.121 Sum_probs=246.4
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccC--CHHHHHHHHHHHHHhhcCch-hh-------
Q 003146 314 VSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEG--SDMSKILMATALSRMELTDQ-SR------- 383 (844)
Q Consensus 314 v~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~Ls~~~~-~~------- 383 (844)
+.-+.++|+.++..|...|.++...+ ..+.+..|+.++.++ +..+|..|+..|.++..... ..
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 33345788999999998887754310 235667788888775 56788888888988754320 00
Q ss_pred -hhhhh---cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHH
Q 003146 384 -ASLGE---DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILA 459 (844)
Q Consensus 384 -~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~ 459 (844)
..+.+ ...-..|+..|.+.++.+ ..++.++..++....... .-.+.+|.|+..+.+... +..+++.++.+|.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~-~~~~r~~al~~l~ 155 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNS-TEHMKESTLEAIG 155 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTC-CHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Confidence 00111 123345778888877777 888888888875421000 014567888888876520 1457899999999
Q ss_pred HHhcC--hhhhc--ccchHHHHHHhhccC--ChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHH
Q 003146 460 RIAQS--ESILV--NKDVAQQMLSLLNLC--SPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIR 533 (844)
Q Consensus 460 ~l~~~--~~~l~--~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~ 533 (844)
.++.. +..+. ....++.++..+... ++.+|..|++++.++...-. ..........-.++.+...+.++++++|
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vr 234 (462)
T 1ibr_B 156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-ANFDKESERHFIMQVVCEATQCPDTRVR 234 (462)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-HHHTSHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 99863 22111 134677788888877 78999999999998754321 0100000011146677777888899999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHh--------------
Q 003146 534 AAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKK-------------- 599 (844)
Q Consensus 534 ~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~-------------- 599 (844)
..++.+|..+....+..+..++....++.++..+. +.+++++..++..+..++..... .....+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMD-LAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHH-HHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHH-HHHhcccccccCCCccchhH
Confidence 99999999888765543333333235555666665 46778888888777666431100 000000
Q ss_pred -------CCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 003146 600 -------TNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSAS 672 (844)
Q Consensus 600 -------~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa 672 (844)
...+|.++..+...+..........+..++.+|..++...... + -..++|.+...+++.++.+|..|.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~----~-~~~~~~~l~~~l~~~~~~~r~aal 387 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD----I-VPHVLPFIKEHIKNPDWRYRDAAV 387 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT----H-HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH----H-HHHHHHHHHHHhcCCChHHHHHHH
Confidence 2245566666654321111111235667777777766432211 1 124678888889999999999999
Q ss_pred HHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhc
Q 003146 673 ISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQ 752 (844)
Q Consensus 673 ~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~ 752 (844)
.+++.++.+..... ..-.-...++.|+..|.++++.||.+|+.+|++++.
T Consensus 388 ~~l~~l~~~~~~~~------------------------------~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 388 MAFGCILEGPEPSQ------------------------------LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHTSSSSCTTT------------------------------TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHH------------------------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999986432100 000114578999999999999999999999999986
Q ss_pred cc
Q 003146 753 DE 754 (844)
Q Consensus 753 ~~ 754 (844)
.-
T Consensus 438 ~~ 439 (462)
T 1ibr_B 438 LL 439 (462)
T ss_dssp HG
T ss_pred hc
Confidence 53
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.23 E-value=4.6e-10 Score=111.59 Aligned_cols=184 Identities=20% Similarity=0.257 Sum_probs=156.6
Q ss_pred CCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHH
Q 003146 266 VGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALH 344 (844)
Q Consensus 266 ~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~ 344 (844)
.+..+.+++.|.+ +..+|..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4567889999988 57789999999986432 5689999999999999999999999987642
Q ss_pred HHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH
Q 003146 345 MAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 345 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
..+++.|++.|.+.++.+|..++.+|+.+. ...+++.|+.+|.++++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 357899999999999999999999999864 34688999999999999999999999999863
Q ss_pred HHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 425 QRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
.++++.|..++.+.+ ..++..++.+|..+. ....++.|..+++++++.+|..|..+|..+.
T Consensus 137 -----~~~~~~L~~~l~d~~---~~vr~~A~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDED---GWVRQSAADALGEIG-------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHC-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhC-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 457889999997654 468899999999883 4567899999999999999999999998874
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=1.5e-07 Score=109.89 Aligned_cols=513 Identities=11% Similarity=0.064 Sum_probs=307.8
Q ss_pred HHHHHHHHcCC---ChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHH
Q 003146 185 IDDVMLQLKHG---DDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKE 261 (844)
Q Consensus 185 i~~lv~~L~~~---~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~ 261 (844)
+..+-..+++. +......++..+..++.-. ++- ....+..++++.+++...+...--++..++..+.+--
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G-~d~-----s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~- 109 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDI-----DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI- 109 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHS-CCC-----CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH-
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CCC-----chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH-
Confidence 45555556532 3445556666655544322 111 1256778888989888888888888888875543321
Q ss_pred HHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhh--cCCChHHHHHHHHHHHHhccC
Q 003146 262 KMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSML--SGNDPVASHDAGKLLNALSSN 338 (844)
Q Consensus 262 ~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL--~s~d~~~~~~A~~~L~nLs~~ 338 (844)
+. .+..+.+-|.+ +...|..|+.+|.++.. ++.. ...+|.+..+| .+.++.++..|+-++.++...
T Consensus 110 -~L---~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~------~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 110 -RL---INNAIKNDLASRNPTFMGLALHCIANVGS-REMA------EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp -HH---HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHH------HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred -HH---HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHH------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 11 24556666666 45678899999998843 3322 34567888888 889999999999999998753
Q ss_pred CccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh----cC------------
Q 003146 339 TQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFR----VG------------ 402 (844)
Q Consensus 339 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~------------ 402 (844)
.+ ..+...+.++.+.++|.+.++.++..|..+|..++..+.. .+ ...+|.+++.|. .+
T Consensus 179 ~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~ 252 (621)
T 2vgl_A 179 SP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFV 252 (621)
T ss_dssp CG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTE
T ss_pred Ch--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCC
Confidence 22 1111248899999999988999999999999998764321 11 134555555443 22
Q ss_pred -CHHHHHHHHHHHHHhhcC--cccHHHHHHcCChHHHHHHhhccC--------CcchhhHHHHHHHHHHHhcChhhhccc
Q 003146 403 -KLEAKLSALNALQNLSLL--AENIQRLVISGIVSPLLQLLFSVT--------SVLMTLREPASAILARIAQSESILVNK 471 (844)
Q Consensus 403 -~~~~~~~A~~aL~nLs~~--~~~~~~i~~~g~v~~Lv~lL~~~~--------~~~~~l~~~a~~~L~~l~~~~~~l~~~ 471 (844)
++-.+-..+..|..++.. ++....+.+ .++.++..+.+.. +....+.-+|+.++..+...+..+.
T Consensus 253 ~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-- 328 (621)
T 2vgl_A 253 PAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-- 328 (621)
T ss_dssp ESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--
T ss_pred CCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH--
Confidence 466777777777777653 233333333 2333333221111 0012455677777777764443322
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhhhhhHH
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM-ETNANIRAAALNLVCTLSKDVYEE 550 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~~L~~ls~~~~~~ 550 (844)
.++..|..++.++++.+|..++..|..++...+. ...+ ......++..+. +++..+|..|+.+|..+.....
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-- 401 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN-- 401 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH--
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh--
Confidence 4677888899889999999999999999876421 1122 235677888888 8899999999999998875432
Q ss_pred HHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHH
Q 003146 551 LAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAG 630 (844)
Q Consensus 551 i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~ 630 (844)
+.. .+..|...+.. .+.+.+..+...++.++...+.... -.+..|+++++...... .. .++.
T Consensus 402 v~~-----Iv~eL~~yl~~-~d~~~~~~~v~~I~~la~k~~~~~~-----~~v~~Ll~ll~~~~~~v---~~----ev~~ 463 (621)
T 2vgl_A 402 AQQ-----IVAEMLSYLET-ADYSIREEIVLKVAILAEKYAVDYT-----WYVDTILNLIRIAGDYV---SE----EVWY 463 (621)
T ss_dssp HHH-----HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCSSTH-----HHHHHHHHHHHHHGGGS---CS----HHHH
T ss_pred HHH-----HHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHHHhhcccc---hH----HHHH
Confidence 211 34456666653 4556665566666655321110011 13567777776543211 12 3333
Q ss_pred HHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccc
Q 003146 631 ILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE--SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHD 708 (844)
Q Consensus 631 aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~ 708 (844)
.+..+... +++.+.. ++..|.+.+.+. ...+-+.++|.+|.++....+..
T Consensus 464 ~l~~ii~~-~~~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~---------------------- 515 (621)
T 2vgl_A 464 RVIQIVIN-RDDVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDP---------------------- 515 (621)
T ss_dssp HHHHHHGG-GCSCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSST----------------------
T ss_pred HHHHHHhC-ChhHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccC----------------------
Confidence 33333321 2333332 244577777765 34566688899999875332200
Q ss_pred cccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHh-h--cCCHHHHH
Q 003146 709 GYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL-E--SGNAKAQE 785 (844)
Q Consensus 709 ~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll-~--~~~~~~~~ 785 (844)
.++ -...+..+..-....++.|+..++.|+..+.... ++ .. .-+..+++.. . +.++++|.
T Consensus 516 -~~~--------p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~--~~-----~~i~~~l~~~~~~~~~d~evrd 578 (621)
T 2vgl_A 516 -RSS--------PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE--VK-----ATIQDVLRSDSQLKNADVELQQ 578 (621)
T ss_dssp -TSC--------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG--GH-----HHHHHHHSSHHHHSCSSHHHHH
T ss_pred -CCC--------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH--HH-----HHHHHHHHHHhcCCCCCHHHHH
Confidence 000 0012345555566788999999999999987532 11 00 0133333322 4 78999999
Q ss_pred HHHHHHHHHHh
Q 003146 786 KALWILERIFR 796 (844)
Q Consensus 786 ~A~~~L~~i~~ 796 (844)
+|...+ +++.
T Consensus 579 RA~~y~-~Ll~ 588 (621)
T 2vgl_A 579 RAVEYL-RLST 588 (621)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHc
Confidence 999765 4554
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.16 E-value=3.7e-08 Score=115.12 Aligned_cols=471 Identities=14% Similarity=0.115 Sum_probs=298.2
Q ss_pred cHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHH
Q 003146 268 SLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMA 346 (844)
Q Consensus 268 ~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~ 346 (844)
+....++.+.+ +.+.++.+.-.+..+++... +.+. =++..+.+=|.++++.++..|..+|.++.. ..++
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----~e~~ 144 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIR---LINNAIKNDLASRNPTFMGLALHCIANVGS-----REMA 144 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----HHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHH---HHHHHHHHhcCCCCHHHHHHHHHHhhccCC-----HHHH
Confidence 56677888877 56777777777777776532 1111 134566666789999999999999999854 2243
Q ss_pred HcCChHHHHHHh--ccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccH
Q 003146 347 EAGYFKPLVQYL--KEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENI 424 (844)
Q Consensus 347 ~~g~i~~Lv~~L--~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~ 424 (844)
+ ..++.+.+.| .+.++.+|..|+-++.++...+. ..+...+.++.|.++|.+.++.++..|+.+|..++.....
T Consensus 145 ~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~- 220 (621)
T 2vgl_A 145 E-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE- 220 (621)
T ss_dssp H-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred H-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH-
Confidence 3 5678888999 78889999999999988876321 2222258899999999999999999999999999864321
Q ss_pred HHHHHcCChHHHHHHhh----ccCC----------cchhhHHHHHHHHHHHhcCh-hhhcc--cchHHHHHHhhc-----
Q 003146 425 QRLVISGIVSPLLQLLF----SVTS----------VLMTLREPASAILARIAQSE-SILVN--KDVAQQMLSLLN----- 482 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~----~~~~----------~~~~l~~~a~~~L~~l~~~~-~~l~~--~~~i~~Lv~lL~----- 482 (844)
.+ ...+|.+++.|. .+.- ..+..+-....+|..++..+ .-... .+.+..++..+.
T Consensus 221 -~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 221 -EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKS 297 (621)
T ss_dssp -HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred -HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccc
Confidence 11 134455554443 2110 02456777777777776432 11100 012233332221
Q ss_pred ----cC--ChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 003146 483 ----LC--SPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG 556 (844)
Q Consensus 483 ----~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~ 556 (844)
.. +..+...|++++..+... ...... ++..|..++.+.++++|..|+..|..+....+.. ..+
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~---~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~- 366 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSE---PNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAV- 366 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHH-
T ss_pred ccccccchHHHHHHHHHHHHHhcCCc---HHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHH-
Confidence 11 237888899999888632 333332 5778899999999999999999999987655310 111
Q ss_pred hhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhcc
Q 003146 557 DKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFT 636 (844)
Q Consensus 557 ~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~ 636 (844)
......++..|..++|..++..+..+|..+.. ..+.+ .++..|...+...+ .+++..++.+++.++
T Consensus 367 ~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL~~yl~~~d-------~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 367 KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEMLSYLETAD-------YSIREEIVLKVAILA 432 (621)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHHCC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHHHHHHHhcC-------HHHHHHHHHHHHHHH
Confidence 22455677777745778899999999999975 22222 23446667776543 246667777777665
Q ss_pred CC--CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcc
Q 003146 637 DP--SDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVK 714 (844)
Q Consensus 637 ~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~ 714 (844)
.. .+.+ -.+..|+++++.+...+...+...+.++....+.++
T Consensus 433 ~k~~~~~~--------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~---------------------------- 476 (621)
T 2vgl_A 433 EKYAVDYT--------WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQ---------------------------- 476 (621)
T ss_dssp HHHCSSTH--------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCH----------------------------
T ss_pred HhcCCcHH--------HHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHH----------------------------
Confidence 31 2222 246778888876655566666677777765544433
Q ss_pred cchHhhhcCCchHHHHhhcCCC--hhhHHHHHHHHHhhhccccchhhhHHHHhcCC------hHHHHHHhhcCCHHHHHH
Q 003146 715 STFCLVKAGAVSPLIQVLEGKE--READETVLGALASLLQDETWESGSNYLAKLSG------TQAIIKVLESGNAKAQEK 786 (844)
Q Consensus 715 ~~~~l~~~~ai~~Lv~lL~~~~--~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~------i~~lv~ll~~~~~~~~~~ 786 (844)
..++..|+..+.+.. ..+...|++.|+..+.. +.+.++ +..+..-+...++.+|..
T Consensus 477 -------~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~---------~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~ 540 (621)
T 2vgl_A 477 -------GYAAKTVFEALQAPACHENLVKVGGYILGEFGNL---------IAGDPRSSPLIQFNLLHSKFHLCSVPTRAL 540 (621)
T ss_dssp -------HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHH---------HHSSTTSCHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -------HHHHHHHHHHHcCccchHHHHHHHHHHhcchHHH---------hcccCCCCHHHHHHHHHHHhccCCHHHHHH
Confidence 114567777787543 34555666777766432 222222 233444445678999999
Q ss_pred HHHHHHHHHhhh-hhhHhhccccchhHHhhhh--cCCCCchHHHHHHHHHHhh
Q 003146 787 ALWILERIFRIE-EHRVKYGESAQVVLIDLAQ--NGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 787 A~~~L~~i~~~~-~~~~~~~~~a~~~Lv~ll~--~~~~~~~~~aa~~L~~l~~ 836 (844)
++.++.+++... +..+. ....|-.... +.|+++|..|..+++-+..
T Consensus 541 ~Lta~~Kl~~~~p~~~~~----i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 541 LLSTYIKFVNLFPEVKAT----IQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHHHHHCGGGHHH----HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHChHHHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 999999997532 11111 1112222333 7889999999999888753
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=7.3e-08 Score=114.06 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=143.8
Q ss_pred cHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHH-HhhcCCChHHHHHHHHHHHHhccC--CccHH
Q 003146 268 SLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLV-SMLSGNDPVASHDAGKLLNALSSN--TQNAL 343 (844)
Q Consensus 268 ~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~s~d~~~~~~A~~~L~nLs~~--~~~~~ 343 (844)
.+.++++.|++ +.++|..|+.+|.+|+.++..++.+.. .|+|..++ .+|.+++.+++..|+++|.||+.+ .+.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 46678888988 567999999999999998888888887 88887655 578899999999999999999964 45688
Q ss_pred HHHHcCChHHHHHHhccCC--------------H-------HHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhc
Q 003146 344 HMAEAGYFKPLVQYLKEGS--------------D-------MSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRV 401 (844)
Q Consensus 344 ~i~~~g~i~~Lv~~L~~~~--------------~-------~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~ 401 (844)
.|+..|++++|..+|+... . ....++..+|.+|+.. ++....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999886421 1 1123566788888864 4556677888999999999864
Q ss_pred C---CHHHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHh--hccCCcchhhHHHHHHHHHHHhc
Q 003146 402 G---KLEAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLL--FSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 402 ~---~~~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL--~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
. ...++..|+.+|++|+.+. +....+.+.|....+..++ ..+. ...+..++++|.|+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~---~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT---DPRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS---CTTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC---cHHHHHHHHHHHhHhh
Confidence 3 3578999999999999874 4555666655433222222 2222 2256789999999853
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.74 E-value=1.7e-05 Score=93.86 Aligned_cols=337 Identities=13% Similarity=0.051 Sum_probs=217.0
Q ss_pred HHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh---cCCHHHHHHHHHHHHHhhcCcccHHHHHHcCC
Q 003146 356 QYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFR---VGKLEAKLSALNALQNLSLLAENIQRLVISGI 432 (844)
Q Consensus 356 ~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~ 432 (844)
+++.......+..|++.|+-+-..+. .+++..|-..|. ++++.++.-|+.+|+-+..+..+ . +
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~-----~ 430 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D-----T 430 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H-----H
T ss_pred hhhhccchHHHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H-----H
Confidence 46666666677788888887654331 134666666666 56778899999999988766543 1 3
Q ss_pred hHHHHHHhhccCC---c--chhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhH
Q 003146 433 VSPLLQLLFSVTS---V--LMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASN 507 (844)
Q Consensus 433 v~~Lv~lL~~~~~---~--~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 507 (844)
+..|...|.+.+. + ...++..|+-.|.....+. .++.++..|..++...+...++.|.-+|..+-...+..+
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS---~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ 507 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS---ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH
Confidence 5667777765541 0 1235556666666553321 134568888898888777777788877776633322222
Q ss_pred HHHHHHhCCcHHHHHHHh-ccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHH--h
Q 003146 508 VRRKMKENGAIHLLLPFL-METNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGIL--S 584 (844)
Q Consensus 508 ~~~~i~~~g~i~~Lv~ll-~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L--~ 584 (844)
++..|+..+ .+.+..+++.++-.|..+.... +...+.+++.|..+.++.++..++.++ +
T Consensus 508 ---------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~alglA 569 (963)
T 4ady_A 508 ---------AIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTIALA 569 (963)
T ss_dssp ---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345555544 3456788888888887664322 225566777777778889998776655 4
Q ss_pred cCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHh-ccC
Q 003146 585 NLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLL-SSE 663 (844)
Q Consensus 585 ~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~ 663 (844)
....++.. +|..|+..+.+... ..++..|+.+|+-+.... + ..+|.++.+| ++.
T Consensus 570 yaGTGn~~---------aIq~LL~~~~~d~~------d~VRraAViaLGlI~~g~-~---------e~v~rlv~~L~~~~ 624 (963)
T 4ady_A 570 YAGTGNNS---------AVKRLLHVAVSDSN------DDVRRAAVIALGFVLLRD-Y---------TTVPRIVQLLSKSH 624 (963)
T ss_dssp TTTSCCHH---------HHHHHHHHHHHCSC------HHHHHHHHHHHHHHTSSS-C---------SSHHHHTTTGGGCS
T ss_pred hcCCCCHH---------HHHHHHHHhccCCc------HHHHHHHHHHHHhhccCC-H---------HHHHHHHHHHHhcC
Confidence 55555544 34445555543321 246778888888765532 2 3567777655 577
Q ss_pred CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHH
Q 003146 664 SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETV 743 (844)
Q Consensus 664 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A 743 (844)
++.+|..|+.||+.++.+.++. .++..|..+++|.++.||..|
T Consensus 625 d~~VR~gAalALGli~aGn~~~-------------------------------------~aid~L~~L~~D~d~~Vrq~A 667 (963)
T 4ady_A 625 NAHVRCGTAFALGIACAGKGLQ-------------------------------------SAIDVLDPLTKDPVDFVRQAA 667 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSCCH-------------------------------------HHHHHHHHHHTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCcH-------------------------------------HHHHHHHHHccCCCHHHHHHH
Confidence 9999999999999998665542 267888999999999999999
Q ss_pred HHHHHhhhccccc--hhhhHHHHhcCChHHHHHHhh--cCCHHHHHHHHHHHHHH
Q 003146 744 LGALASLLQDETW--ESGSNYLAKLSGTQAIIKVLE--SGNAKAQEKALWILERI 794 (844)
Q Consensus 744 ~~AL~~L~~~~~~--~~~~~~i~~~g~i~~lv~ll~--~~~~~~~~~A~~~L~~i 794 (844)
+.||+.+....+- ...+..+ .+.|.+... +.++..+..+..+.+-+
T Consensus 668 i~ALG~Ig~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 668 MIALSMILIQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHSTTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 9999999865320 0001111 222444443 35677888777766544
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.73 E-value=3.9e-08 Score=116.39 Aligned_cols=192 Identities=12% Similarity=0.060 Sum_probs=147.3
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHH-HhccCCHHHHHHHHHHHHHhhcC--chhhh
Q 003146 308 GCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQ-YLKEGSDMSKILMATALSRMELT--DQSRA 384 (844)
Q Consensus 308 g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~Ls~~--~~~~~ 384 (844)
..|.++++.|+|+|+..+..|+++|.||+.++.++..+...|++.+++. +|.+.+.+++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4566677889999999999999999999998888999999999988765 67888899999999999999875 46788
Q ss_pred hhhhcCchHHHHHHhhcCCH---------------------HHHHHHHHHHHHhhcCc-ccHHHHHHcCChHHHHHHhhc
Q 003146 385 SLGEDGAIEPLVRMFRVGKL---------------------EAKLSALNALQNLSLLA-ENIQRLVISGIVSPLLQLLFS 442 (844)
Q Consensus 385 ~i~~~g~i~~Lv~lL~~~~~---------------------~~~~~A~~aL~nLs~~~-~~~~~i~~~g~v~~Lv~lL~~ 442 (844)
.+...|++++|..+|+.... .....++.+|++||... +....+...|.++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 88999999999999864111 12345778999999654 456677788999999999876
Q ss_pred cCCcchhhHHHHHHHHHHHhcCh----hhhcccch---HHHHHHhhccCChHHHHHHHHHHHHhh
Q 003146 443 VTSVLMTLREPASAILARIAQSE----SILVNKDV---AQQMLSLLNLCSPTIQYHLLHALNSIA 500 (844)
Q Consensus 443 ~~~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~---i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 500 (844)
.+..+..++..++.+|..++.+. ..+.+.+. ...+..+.+ .+...+..++++|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 65545678899999999999885 22333332 233333333 33344667788888874
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.52 E-value=1e-08 Score=94.11 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=91.2
Q ss_pred cCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHH
Q 003146 650 HGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLI 729 (844)
Q Consensus 650 ~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv 729 (844)
...++.|..+|+++++.+|..|+++|+++.. ..++.|+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------------------------------------~~~~~L~ 48 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------------------------------------EAFEPLL 48 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------------------------------------TTHHHHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------------------------------------hHHHHHH
Confidence 3567788888988888888888877765441 1368999
Q ss_pred HhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccc
Q 003146 730 QVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQ 809 (844)
Q Consensus 730 ~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~ 809 (844)
.+|.++++.||..|+.+|.++.... ++++|++.++++++.+|..|+++|.++-. ..+.
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~~~~-------------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------~~a~ 106 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQDER-------------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---------ERVR 106 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGCSHH-------------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------HHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCHH-------------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHH
Confidence 9999999999999999999987543 58899999999999999999999987731 1234
Q ss_pred hhHHhhhhcCCCCchHHHHHHHHH
Q 003146 810 VVLIDLAQNGDSRLKPAVAKLLAQ 833 (844)
Q Consensus 810 ~~Lv~ll~~~~~~~~~~aa~~L~~ 833 (844)
..|++++++.|+.+|..|..+|.+
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 689999999999999999998865
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.41 E-value=8.8e-08 Score=87.79 Aligned_cols=121 Identities=22% Similarity=0.215 Sum_probs=88.8
Q ss_pred CCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 003146 600 TNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLS 679 (844)
Q Consensus 600 ~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls 679 (844)
...++.++.+|.+++...+. .++.+|.++.. + .+|.|+++|+++++.+|..|+++|+++.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~-------~A~~~L~~~~~---~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRR-------DVSTALSRMGD---E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp ----------CCSSCCCSSS-------SCCSSTTSCSS---T----------THHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred cccHHHHHHHhcCCCHHHHH-------HHHHHHHHhCc---h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 45677888888877654332 55556655432 1 2688999999999999999999999876
Q ss_pred hcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhh
Q 003146 680 QNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESG 759 (844)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~ 759 (844)
. ..++++|+.+|.++++.||..|+.+|..+....
T Consensus 71 ~-----------------------------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~----- 104 (131)
T 1te4_A 71 D-----------------------------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER----- 104 (131)
T ss_dssp S-----------------------------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHH-----
T ss_pred C-----------------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-----
Confidence 2 125799999999999999999999999987543
Q ss_pred hHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 760 SNYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 760 ~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
+++.|++++++.++.+|..|.++|.+|
T Consensus 105 --------a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 105 --------VRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 588899999999999999999988653
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.35 E-value=5.3e-05 Score=89.64 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=183.0
Q ss_pred ChHHHHHHhc---cCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCC--------HHHHHHHHHHHHHhh
Q 003146 350 YFKPLVQYLK---EGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGK--------LEAKLSALNALQNLS 418 (844)
Q Consensus 350 ~i~~Lv~~L~---~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~~~~~A~~aL~nLs 418 (844)
++..|-+.|. ++++.++.-|+-+|+.+..+... .++..|...|.+.+ +.++..|+..|+-..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 4566666666 45667787777788877655322 25677788787655 567778888888765
Q ss_pred cCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhh-ccCChHHHHHHHHHHH
Q 003146 419 LLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLL-NLCSPTIQYHLLHALN 497 (844)
Q Consensus 419 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~ 497 (844)
....+. .+++.|...|.+.+. ..++.|+-.|+.+-.+. .+..++..|+..+ .+.+..++..++..|.
T Consensus 466 ~GS~~e------ev~e~L~~~L~dd~~---~~~~~AalALGli~vGT---gn~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 466 MGSANI------EVYEALKEVLYNDSA---TSGEAAALGMGLCMLGT---GKPEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp TTCCCH------HHHHHHHHHHHTCCH---HHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCCH------HHHHHHHHHHhcCCH---HHHHHHHHHHhhhhccc---CCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 443321 235567888775542 34566666676552221 1334567777754 4457788888888888
Q ss_pred HhhcCCChhHHHHHHHhCCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHH
Q 003146 498 SIAAHSSASNVRRKMKENGAIHLLLPFLM-ETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEK 576 (844)
Q Consensus 498 ~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~ 576 (844)
.+.... ...++.+++.|. +.++-+|..|+-++..-....+ ....++.|+..+.++.+..++
T Consensus 534 ll~~g~-----------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG-------n~~aIq~LL~~~~~d~~d~VR 595 (963)
T 4ady_A 534 LINYGR-----------QELADDLITKMLASDESLLRYGGAFTIALAYAGTG-------NNSAVKRLLHVAVSDSNDDVR 595 (963)
T ss_dssp HHTTTC-----------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC-------CHHHHHHHHHHHHHCSCHHHH
T ss_pred hhhCCC-----------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHhccCCcHHHH
Confidence 776543 236777877776 4667788877776643222222 122667788777767788899
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHH
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLL 656 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~L 656 (844)
..|+.+|+.+..+++ ..++.++.++.... ...++..++.+|+.++... +. ..++..|
T Consensus 596 raAViaLGlI~~g~~---------e~v~rlv~~L~~~~------d~~VR~gAalALGli~aGn-~~-------~~aid~L 652 (963)
T 4ady_A 596 RAAVIALGFVLLRDY---------TTVPRIVQLLSKSH------NAHVRCGTAFALGIACAGK-GL-------QSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHTSSSC---------SSHHHHTTTGGGCS------CHHHHHHHHHHHHHHTSSS-CC-------HHHHHHH
T ss_pred HHHHHHHHhhccCCH---------HHHHHHHHHHHhcC------CHHHHHHHHHHHHHhccCC-Cc-------HHHHHHH
Confidence 889988988765443 46777877664322 1257789999999887643 21 1246778
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhcCcc
Q 003146 657 VKLLSSESVVAKSSASISLAQLSQNSLS 684 (844)
Q Consensus 657 v~lL~~~~~~vk~~Aa~aL~~ls~~~~~ 684 (844)
..++++.++.|+..|+.+|+.+.....+
T Consensus 653 ~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 8999999999999999999999876554
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.26 E-value=1.7e-05 Score=84.51 Aligned_cols=278 Identities=13% Similarity=0.127 Sum_probs=153.9
Q ss_pred hHHHHHHhhccCCcchhhHHHHHHHHHHHhcChh-hhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHH
Q 003146 433 VSPLLQLLFSVTSVLMTLREPASAILARIAQSES-ILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRK 511 (844)
Q Consensus 433 v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~-~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 511 (844)
.+..+.++.+.+ ..++.-.--.+.+++..++ ++ =++..|..=+++++|-+|..|+++|+++.... -..
T Consensus 70 f~~v~kl~~s~d---~~lKrLvYLyl~~~~~~~~e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~-- 138 (355)
T 3tjz_B 70 FFAMTKLFQSND---PTLRRMCYLTIKEMSCIAEDVI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQ-- 138 (355)
T ss_dssp HHHHHGGGGCCC---HHHHHHHHHHHHHHTTTSSCGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THH--
T ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHhCCCHHHHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHH--
Confidence 445666777665 4567777777777766532 21 24667777788899999999999999997652 111
Q ss_pred HHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH
Q 003146 512 MKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNK 591 (844)
Q Consensus 512 i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~ 591 (844)
...+.+.+.+.+.++.||..|+-+...|....++-+. +.+..+-+++. +.++.++..|.++|..+...+.
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAAS-SDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhch
Confidence 2467788899999999999999999988776665432 35666666665 5788889999999999876553
Q ss_pred HHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 003146 592 KATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSA 671 (844)
Q Consensus 592 ~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~A 671 (844)
. ++..++..+..+.. ..++.+-..+..+..+...++++ ....+++.|...|++.++.|.-.|
T Consensus 209 ~---------a~~kLv~~l~~~~l----~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa 270 (355)
T 3tjz_B 209 L---------AVSKMISKFTRHGL----KSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEA 270 (355)
T ss_dssp H---------HHHHHHHHHHSSCC----SCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHH
T ss_pred H---------HHHHHHHHHhcCCC----cChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHH
Confidence 2 23445555544311 11233334444444444322122 234677888888999999999999
Q ss_pred HHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhh
Q 003146 672 SISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLL 751 (844)
Q Consensus 672 a~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~ 751 (844)
+.++..+...+... -..++.+|..+|.++++++|..|+..|..++
T Consensus 271 ~k~I~~l~~~~~~~-----------------------------------~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 271 ASAIVNLPGCSAKE-----------------------------------LAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp HHHHTC----------------------------------------------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred HHHHHhccCCCHHH-----------------------------------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 99999886522221 1346788999999999999999999999888
Q ss_pred ccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHH
Q 003146 752 QDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWIL 791 (844)
Q Consensus 752 ~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L 791 (844)
.... ..+.. .-.-+..++.++|..+...|+..|
T Consensus 316 ~~~P-----~~v~~--~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 316 MKHP-----SAVTA--CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ----------------------------------------
T ss_pred HHCc-----HHHHH--HHHHHHHHccCCcHhHHHHHHHHh
Confidence 7542 12211 223466777888888877777655
No 72
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=1.8e-05 Score=80.62 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=135.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcC-chh-hhhhhhcCchHHHHHHh-hcCCHHHHHHHHHHHHHhhcCccc-HHHHH
Q 003146 353 PLVQYLKEGSDMSKILMATALSRMELT-DQS-RASLGEDGAIEPLVRMF-RVGKLEAKLSALNALQNLSLLAEN-IQRLV 428 (844)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~-~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~~-~~~i~ 428 (844)
.+.+.+.+.++..|..++..|..+... +.. ...+ ...++.|...+ ++.+..++..|+.+|..|+..-.. -...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~- 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY- 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence 477888888899999999999887654 221 1111 24577888888 489999999999999999954221 1111
Q ss_pred HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChh-H
Q 003146 429 ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSAS-N 507 (844)
Q Consensus 429 ~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~ 507 (844)
-..++|+++..+.+.+ ..+++.+..+|..+...... ...++.+...+++.++.+|..++..|..+....+.. .
T Consensus 96 ~~~ilp~ll~~l~d~~---~~vr~~a~~aL~~~~~~~~~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKK---PNVVTALREAIDAIYASTSL---EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCC---HHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 2336788888887655 45889999999999875321 346788888899899999999999999964432111 1
Q ss_pred HHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH
Q 003146 508 VRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 508 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
....+ ...++.|+.++.+.++++|..|..++..+....++
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 11222 24789999999999999999999999888766553
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=0.00016 Score=70.13 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=152.3
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHH
Q 003146 516 GAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATE 595 (844)
Q Consensus 516 g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 595 (844)
+.+..|..++++.++.++.+|..+|..+-...+.......-+..++.++.+++ +.++.+..-|..+|..|-.+.+--.+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 36889999999999999999999999888775433333334558888999887 57777777777766655332221111
Q ss_pred HHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 003146 596 LLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISL 675 (844)
Q Consensus 596 ~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL 675 (844)
.+. .....+.+++.+++. -+.+.++..+.-+ ....+. .+++..+..++.|.+..+|..+..++
T Consensus 112 ~y~--Kl~~aL~dlik~~~~-------il~~eaae~Lgkl-kv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L 174 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDD-------MMRIETIDVLSKL-QPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLF 174 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCH-------HHHHHHHHHHHHC-CBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhcCCCc-------hHHHHHHHHhCcC-Ccccch-------HHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 111 123466666665442 5778899998887 333221 13457788999888999999999999
Q ss_pred HHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc
Q 003146 676 AQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET 755 (844)
Q Consensus 676 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~ 755 (844)
.+++..+.+-. +-.+.+..+-.+|.+.|+.+++.|+.+|..+..-.-
T Consensus 175 ~eia~~S~D~~---------------------------------i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 175 LNMLNSSADSG---------------------------------HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp HHHGGGCSSCC---------------------------------CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHhhcccCCHH---------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence 99997654311 012356788899999999999999999999987654
Q ss_pred chhhhHHHHhcCChHHHHHHh--hcCCHHHHHHHHHHHHHH
Q 003146 756 WESGSNYLAKLSGTQAIIKVL--ESGNAKAQEKALWILERI 794 (844)
Q Consensus 756 ~~~~~~~i~~~g~i~~lv~ll--~~~~~~~~~~A~~~L~~i 794 (844)
.++ .+-+.-++-..++-+ ..|.|.++.+|-.+-+.+
T Consensus 222 ~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 222 LEN---VKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CSC---CHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred cHh---HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 332 122222344444444 358888998887654433
No 74
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.11 E-value=0.015 Score=71.62 Aligned_cols=558 Identities=13% Similarity=0.121 Sum_probs=269.5
Q ss_pred HHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCC--CCchHHHHHHHHHHHhHhc-Chhh----------HHHHhcCCcH
Q 003146 203 ALLELRELISAKTVDSEWINEAEIIAVLLNRLGS--SKPYNRLIMIQILRNLASE-NADY----------KEKMANVGSL 269 (844)
Q Consensus 203 a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s--~~~~~~~~a~~~L~~L~~~-~~~~----------~~~i~~~g~i 269 (844)
|-..+..+-..|. .+..+.+++.+ .+..+|..|...|++.+.. |... +..+ -
T Consensus 23 Ae~~L~~~~~~p~----------~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-----k 87 (960)
T 1wa5_C 23 SERNLRQLETQDG----------FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-----K 87 (960)
T ss_dssp HHHHHHHHHTSTT----------HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-----H
T ss_pred HHHHHHHhhcCCC----------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-----H
Confidence 5555666644443 45667777743 3568899999999998764 5311 1111 1
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc-------c
Q 003146 270 SALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ-------N 341 (844)
Q Consensus 270 ~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~-------~ 341 (844)
..++..+.+ +...|..++.++..+++.+-. ....+.+|.|+.+++++++..+..+..+|..++..-. .
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~ 163 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDEL 163 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 234555443 455777777788777654211 1237789999999998888888888999888875211 1
Q ss_pred HHHHH--HcCChHHHHHH-------hccCCH---------HHHHHHHHHHHHhhcCchh---hhhhhhcCchHHHHHHhh
Q 003146 342 ALHMA--EAGYFKPLVQY-------LKEGSD---------MSKILMATALSRMELTDQS---RASLGEDGAIEPLVRMFR 400 (844)
Q Consensus 342 ~~~i~--~~g~i~~Lv~~-------L~~~~~---------~~~~~aa~~L~~Ls~~~~~---~~~i~~~g~i~~Lv~lL~ 400 (844)
+..+. -...+++++++ +.+... .....+..++.++...+-. ...+ ...++.+..++.
T Consensus 164 ~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~ 241 (960)
T 1wa5_C 164 FLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLS 241 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHc
Confidence 22111 11234444443 333321 1122355566665432211 1111 122344555553
Q ss_pred cC------C---------HHHHHHHHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhcc--CCcchhhHHHHHHHHHHHh
Q 003146 401 VG------K---------LEAKLSALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSV--TSVLMTLREPASAILARIA 462 (844)
Q Consensus 401 ~~------~---------~~~~~~A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~l~~~a~~~L~~l~ 462 (844)
.. + ..+|+.++.+|..+... ++.-... -...++..+.++... ......+...+...+..++
T Consensus 242 ~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 242 YSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp CCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 21 1 13567777777776632 2211001 112233344444321 1112334555555555554
Q ss_pred cChhhhcccchHHHHHHhhccCChHHHHHHH--HHHHHhhcCCChhHHHHHHHhCCcHHHHHHHh-ccCCHHHHHHHHHH
Q 003146 463 QSESILVNKDVAQQMLSLLNLCSPTIQYHLL--HALNSIAAHSSASNVRRKMKENGAIHLLLPFL-METNANIRAAALNL 539 (844)
Q Consensus 463 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~--~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~v~~~A~~~ 539 (844)
..+.. ..+++ ++..-...+ -++..++-..+..+ ..+..-...+-.-+ .+.....|..|..+
T Consensus 321 ~~~~~----------~~~~~--~~~~l~~li~~~i~~~m~~~~~d~e----~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 321 RIPKY----------FEIFN--NESAMNNITEQIILPNVTLREEDVE----LFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp TSHHH----------HGGGC--SHHHHHHHHHHTHHHHHSCCGGGTT----TTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred CcHhH----------HHHHc--CchHHHHHHHHHhHHhcCCCHHHHH----HHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 33210 01111 111111222 12233332110000 00000000000011 12223678899999
Q ss_pred HHHhhhhhhHHHHHHhchhhHHHHHHHhcC-----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHhC-----CChHH----
Q 003146 540 VCTLSKDVYEELAEQLGDKYLNILVDITLS-----STSENEKAAAVGILSNLPVSNKKATELLKKT-----NLLPS---- 605 (844)
Q Consensus 540 L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~-----~~v~~---- 605 (844)
|..++...++.+... .++.+-..+.. +.+...+.+|..+++.++.+...... -... ...+.
T Consensus 385 L~~l~~~~~~~v~~~----~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~ 459 (960)
T 1wa5_C 385 LKELKEKNEVLVTNI----FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKE 459 (960)
T ss_dssp HHHHHHHCHHHHHHH----HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHH
T ss_pred HHHHHHHcchhHHHH----HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHH
Confidence 998887665433222 22222233331 23456677777777666421100000 0000 12222
Q ss_pred HHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccc
Q 003146 606 LISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSL 685 (844)
Q Consensus 606 L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~ 685 (844)
++..+.++.. ...-++..+++++++|+..-.++. -..++|.+++.|.++++.|+..|+.||.+|.......
T Consensus 460 v~p~l~~~~~----~~p~vr~~a~~~lg~~~~~~~~~~-----l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 460 IAPDLTSNNI----PHIILRVDAIKYIYTFRNQLTKAQ-----LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESN 530 (960)
T ss_dssp THHHHHCSSC----SCHHHHHHHHHHHHHTGGGSCHHH-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred hHHHhcCCCC----CCceehHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence 2333444320 123578899999999987543321 2346788888898888999999999999988632100
Q ss_pred cccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCC-----hhhHHHHHHHHHhhhccc--cchh
Q 003146 686 RKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKE-----READETVLGALASLLQDE--TWES 758 (844)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~-----~~v~~~A~~AL~~L~~~~--~~~~ 758 (844)
. .+. ...+. ....=.-...++.|..++.... ....+.++.||..++... ....
T Consensus 531 ~---~~~--------~~~~~---------~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p 590 (960)
T 1wa5_C 531 T---SPA--------FIFHK---------EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP 590 (960)
T ss_dssp S---SCC--------BSSCG---------GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG
T ss_pred c---ccc--------ccccH---------HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh
Confidence 0 000 00000 0000001224456666666531 113456666676665321 1111
Q ss_pred hhHHHHhcCChHHHHHHhh-----cCCHHHHHHHHHHHHHHHhhh--hhhHhhccccchhHHhhhhcCCCCchHHHHHHH
Q 003146 759 GSNYLAKLSGTQAIIKVLE-----SGNAKAQEKALWILERIFRIE--EHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLL 831 (844)
Q Consensus 759 ~~~~i~~~g~i~~lv~ll~-----~~~~~~~~~A~~~L~~i~~~~--~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L 831 (844)
....+ ++.++..+. ..++..+..+..++..+++.. +....+....-+++...++....+....+-.++
T Consensus 591 ~~~~l-----~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 591 LFPQL-----LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp GHHHH-----HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 22222 344444442 346778777888888887651 122223222224666777776677888888877
Q ss_pred HHHhhh
Q 003146 832 AQLELL 837 (844)
Q Consensus 832 ~~l~~~ 837 (844)
..+-..
T Consensus 666 ~~l~~~ 671 (960)
T 1wa5_C 666 AFVVEQ 671 (960)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776543
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.09 E-value=0.0011 Score=72.33 Aligned_cols=317 Identities=12% Similarity=0.101 Sum_probs=198.7
Q ss_pred hCCCHHHHHHHhC-CCCchHHHHHHHHHHHhHhcCh---hhHHHHhcCCcH-HHHHH-HhcCCHH-HHHHHHHHHHHccC
Q 003146 223 EAEIIAVLLNRLG-SSKPYNRLIMIQILRNLASENA---DYKEKMANVGSL-SALVK-SLTRDVE-EQREAVGLLLDLSD 295 (844)
Q Consensus 223 ~~~~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~~~---~~~~~i~~~g~i-~~Lv~-~L~~~~~-~~~~A~~~L~~Ls~ 295 (844)
.+..+..++.+|+ ..+.++....+..+..+...++ ..-..+.+.... ..+.. ++..+.. ....+...+..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 3347888999987 5677888888888888877654 211222222222 21222 2333333 33444444444443
Q ss_pred CChhHHHHhhhhCcHH--HHHHhhcC-CChHHHHHHHHHHHHhccCCccHHHHHHcC--ChHHHHHHhcc----------
Q 003146 296 LPAVWRRIGRIQGCIV--MLVSMLSG-NDPVASHDAGKLLNALSSNTQNALHMAEAG--YFKPLVQYLKE---------- 360 (844)
Q Consensus 296 ~~~~~~~i~~~~g~i~--~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~~L~~---------- 360 (844)
......... .+.+. .++..|.. ++...+.-++.+|..|...++.|..+.+.+ .+++++..++.
T Consensus 155 ~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 211111110 11222 34455554 345667778899999999999999887543 36666654431
Q ss_pred -----C--CHHHHHHHHHHHHHhhcCchhhhhhhhcCch--HHHHHHhhc-CCHHHHHHHHHHHHHhhcCc-c----cHH
Q 003146 361 -----G--SDMSKILMATALSRMELTDQSRASLGEDGAI--EPLVRMFRV-GKLEAKLSALNALQNLSLLA-E----NIQ 425 (844)
Q Consensus 361 -----~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i--~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~-~----~~~ 425 (844)
+ ....+.++.-+++-|+..++....+...+.+ +.|+.+++. ....+.+-++.+|.||.... + ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 1344678899999999998777777666543 677777775 45678889999999999764 1 222
Q ss_pred HHH-HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC----------------------h----h--------hhcc
Q 003146 426 RLV-ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS----------------------E----S--------ILVN 470 (844)
Q Consensus 426 ~i~-~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~----------------------~----~--------~l~~ 470 (844)
.++ ..++ ++++..|....-.++.+.+..-.+...|... + + -+.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 233 3344 6677777765433344444433333322211 1 0 1222
Q ss_pred c--chHHHHHHhhcc----------CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 471 K--DVAQQMLSLLNL----------CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 471 ~--~~i~~Lv~lL~~----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
+ ..+..|+++|.+ .+|.+..-|+.=+..++++. +.-+..+.+-|+=..+.+++.+++++||..|+.
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~--P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL--PESIDVLDKTGGKADIMELLNHSDSRVKYEALK 469 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC--TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC--cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 2 347899999974 35778888888899999886 677888889999999999999999999999999
Q ss_pred HHHHhh
Q 003146 539 LVCTLS 544 (844)
Q Consensus 539 ~L~~ls 544 (844)
++..+.
T Consensus 470 avQklm 475 (480)
T 1ho8_A 470 ATQAII 475 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.05 E-value=4.1e-05 Score=78.02 Aligned_cols=181 Identities=18% Similarity=0.132 Sum_probs=133.9
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhc-C-CHHHHHHHHHHHHHccCC--ChhHHHH
Q 003146 228 AVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLT-R-DVEEQREAVGLLLDLSDL--PAVWRRI 303 (844)
Q Consensus 228 p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~-~-~~~~~~~A~~~L~~Ls~~--~~~~~~i 303 (844)
|.+.+.+.+.+...|..++..|..++..++...... -...++.|.+.|. + +..++..|+..+..|+.. +.+...+
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 458888999999999999999999987633211000 0123556677774 4 567889999999998864 2222222
Q ss_pred hhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc--h
Q 003146 304 GRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD--Q 381 (844)
Q Consensus 304 ~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~ 381 (844)
...+|.|+..+.+.++.++..|..+|.++...... ...++.+...|.+.++.+|..++..|..+.... +
T Consensus 97 ---~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 ---SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp ---HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 44799999999999999999999999998764321 125677888899889999999999999964432 2
Q ss_pred --hhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 382 --SRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 382 --~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
....+ ...+|.|+.+|.+.++.+|..|..+|..++..
T Consensus 168 ~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 12222 36789999999999999999999999988743
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.01 E-value=0.00025 Score=68.88 Aligned_cols=205 Identities=12% Similarity=0.087 Sum_probs=144.1
Q ss_pred ccHHHHHHHHHHHHHhhh-------hccHHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCC
Q 003146 164 RKAVEMEEEIQEIVEERI-------SLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGS 236 (844)
Q Consensus 164 ~~~~~l~~~I~~~~~~~~-------~~~i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s 236 (844)
-+-..+|+-+..|+-+.. ...+..++++|...++..+..++..+.++.++-+...+-..-....|.++.++++
T Consensus 7 i~~~~lre~L~sWkiK~a~ela~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~ 86 (265)
T 3b2a_A 7 ISKTELRELVLSWQILDAVSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ 86 (265)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 344556666777765432 1247788888877777788888877777776632221222222368999999999
Q ss_pred CCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCC-HHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHH
Q 003146 237 SKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRD-VEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVS 315 (844)
Q Consensus 237 ~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 315 (844)
+|..+...|+++|+.|..+.+-....+.. .+..+...+.++ .-.+..|+..+..+.-... ..+.+..+.+
T Consensus 87 ~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~s 157 (265)
T 3b2a_A 87 ENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINE 157 (265)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHH
Confidence 99999999999999998775544433332 234556666664 4467789999988822221 1455668888
Q ss_pred hhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 003146 316 MLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT 379 (844)
Q Consensus 316 lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (844)
++.|.|+.++..|..+|.|++...+.+..+ .+.+..+-.+|++.++..+..|..+|..+...
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999998644322222 24566677889999999999999999887765
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.01 E-value=0.0002 Score=76.22 Aligned_cols=277 Identities=14% Similarity=0.132 Sum_probs=144.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccc
Q 003146 393 EPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKD 472 (844)
Q Consensus 393 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~ 472 (844)
+..++++.+.+...|+-.--.+.+++..++..- + ++..|..=+++++ +.++-.|+.+|+++...+- -+.
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N---~~iR~lALRtL~~I~~~~m---~~~ 139 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKE---DSYRGPAVRALCQITDSTM---LQA 139 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSC---HHHHHHHHHHHHHHCCTTT---HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCc---HhHHHHHHHHHhcCCCHHH---HHH
Confidence 456777788888888877777777776643211 1 2344555555554 3467788888888855431 113
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA 552 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~ 552 (844)
..+.+.+.+.+.+|.+|..|+-+...|.... ++. + .+++..+-+++.+.++-++..|..+|..+..+.+.
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV---V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH---H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 3455666777889999999999999988764 332 2 26899999999999999999999999888654321
Q ss_pred HHhchhhHHHHHHHhcCCC--CHHHHHHHHHHHhcCCCCC-HHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHH
Q 003146 553 EQLGDKYLNILVDITLSST--SENEKAAAVGILSNLPVSN-KKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVA 629 (844)
Q Consensus 553 ~~l~~~~l~~Lv~lL~~~~--~~~~~~~a~~~L~~L~~~~-~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~ 629 (844)
.+..|+..+...+ ++-.+..-..++..+...+ +. .....++.+...+++.+ +.+.-+|+
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~-------~aVvyEa~ 271 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKH-------EMVVYEAA 271 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSS-------HHHHHHHH
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCC-------hHHHHHHH
Confidence 3344555444322 4444545556666665544 22 12344555666665433 35778899
Q ss_pred HHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCccccc
Q 003146 630 GILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDG 709 (844)
Q Consensus 630 ~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~ 709 (844)
.++..+.... .. . ...+++.|..++.++++.+|-.|...|..+....+..-
T Consensus 272 k~I~~l~~~~-~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v----------------------- 322 (355)
T 3tjz_B 272 SAIVNLPGCS-AK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV----------------------- 322 (355)
T ss_dssp HHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------
T ss_pred HHHHhccCCC-HH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH-----------------------
Confidence 9998876521 11 1 13457888899999999999888888887776544311
Q ss_pred ccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHh
Q 003146 710 YCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALAS 749 (844)
Q Consensus 710 ~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~ 749 (844)
..+-..+..++.|+|..+.--|+..|..
T Consensus 323 ------------~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 323 ------------TACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ----------------------------------------
T ss_pred ------------HHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 1133567788888888777666655543
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.88 E-value=0.00054 Score=63.57 Aligned_cols=223 Identities=18% Similarity=0.218 Sum_probs=157.7
Q ss_pred hchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHh
Q 003146 555 LGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIR 634 (844)
Q Consensus 555 l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~ 634 (844)
.....+..++++|.+ +--.++..|..++..+...-++...-+ +..|+.+++.+.. -++....+.+++.
T Consensus 29 ~d~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEa------IpltqeIa~a~G~ 96 (253)
T 2db0_A 29 YDESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEA------IPLTQEIAKAFGQ 96 (253)
T ss_dssp HCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCS------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhccc------CchHHHHHHHHhH
Confidence 445578888998873 556889999999999988777655444 3456666654431 1455677777777
Q ss_pred ccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcc
Q 003146 635 FTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVK 714 (844)
Q Consensus 635 l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~ 714 (844)
++.. +|+.. .+.+|.|..-..-+++.+|..-+.+|..+....+.+-
T Consensus 97 la~i-~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~---------------------------- 142 (253)
T 2db0_A 97 MAKE-KPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM---------------------------- 142 (253)
T ss_dssp HHHH-CHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----------------------------
T ss_pred HHHh-CHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----------------------------
Confidence 6652 45432 2567888888888999999999999999998776532
Q ss_pred cchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003146 715 STFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794 (844)
Q Consensus 715 ~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i 794 (844)
.+++..+..+|.++|..=+.+|+..+..+..++. +.+ ..-++.|..+|+++|+-+|.-|..+|..+
T Consensus 143 -------~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~-----~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 143 -------ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF-----KYV--NPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp -------HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH-----HHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc-----ccc--CcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 3466888899999998888888888888877652 221 22478899999999999999999999988
Q ss_pred Hhhhh-hhHhhccccchhHHhhhhcCCCCchHHHHHHHHHHhhhhcCCC
Q 003146 795 FRIEE-HRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSS 842 (844)
Q Consensus 795 ~~~~~-~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~~~~~s~ 842 (844)
..... .+.. ...-++-+.+.+..++..+...|..+..++..|+
T Consensus 209 A~~npklRki-----i~~kl~e~~D~S~lv~~~V~egL~rl~l~e~~~~ 252 (253)
T 2db0_A 209 ATLNDKLRKV-----VIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSS 252 (253)
T ss_dssp HTSCHHHHHH-----HHHHHHHCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcccC
Confidence 76532 1111 1122344557777788899999999988876654
No 80
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.88 E-value=0.058 Score=66.30 Aligned_cols=466 Identities=9% Similarity=0.047 Sum_probs=226.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChh------hHH
Q 003146 188 VMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENAD------YKE 261 (844)
Q Consensus 188 lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~------~~~ 261 (844)
++..+...+..........+..++.. ++...| ...+|.+++.+.+++...+..++.+|..+...+.. .+.
T Consensus 90 ll~~l~~~~~~ir~~l~~~ia~ia~~-d~p~~W---p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~ 165 (960)
T 1wa5_C 90 IVPLMISLPNNLQVQIGEAISSIADS-DFPDRW---PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL 165 (960)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHH-HSTTTC---TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh-hCccch---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Confidence 34444444433333333445555532 111245 34788899999888888889999999999875531 111
Q ss_pred HHh--cCCcHHHHHH-------HhcCC-H---------HHHHHHHHHHHHccCC--Chh-HHHHhhhhCcHHHHHHhhcC
Q 003146 262 KMA--NVGSLSALVK-------SLTRD-V---------EEQREAVGLLLDLSDL--PAV-WRRIGRIQGCIVMLVSMLSG 319 (844)
Q Consensus 262 ~i~--~~g~i~~Lv~-------~L~~~-~---------~~~~~A~~~L~~Ls~~--~~~-~~~i~~~~g~i~~Lv~lL~s 319 (844)
.+. -....+.+++ .+..+ . +....+++.++.+... +.. ...+ ...++.+..++..
T Consensus 166 ~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~ 242 (960)
T 1wa5_C 166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI---QVGMGIFHKYLSY 242 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH---HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH---HHHHHHHHHHHcC
Confidence 110 0011222222 24331 1 1123355666655432 221 1111 2334555665532
Q ss_pred C------C---------hHHHHHHHHHHHHhcc-CCc-cHHHHHHcCChHHHHHHhc-----cCCHHHHHHHHHHHHHhh
Q 003146 320 N------D---------PVASHDAGKLLNALSS-NTQ-NALHMAEAGYFKPLVQYLK-----EGSDMSKILMATALSRME 377 (844)
Q Consensus 320 ~------d---------~~~~~~A~~~L~nLs~-~~~-~~~~i~~~g~i~~Lv~~L~-----~~~~~~~~~aa~~L~~Ls 377 (844)
. | ..++..++.+|..+.. .++ ....+ ...++..++.+. ...+.+...+...+..++
T Consensus 243 ~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 243 SNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp CSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred CCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 1 1 1345566677766653 222 11111 123444555554 234566667777777766
Q ss_pred cCchhhhhhhhcCchHHHH-----HHhh----c-----CCH--------------HHHHHHHHHHHHhhcCcccHHHHHH
Q 003146 378 LTDQSRASLGEDGAIEPLV-----RMFR----V-----GKL--------------EAKLSALNALQNLSLLAENIQRLVI 429 (844)
Q Consensus 378 ~~~~~~~~i~~~g~i~~Lv-----~lL~----~-----~~~--------------~~~~~A~~aL~nLs~~~~~~~~i~~ 429 (844)
.....+..+.....++.++ ..+. + .++ ..|..|..+|..|+..-+ ..++.
T Consensus 321 ~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~ 398 (960)
T 1wa5_C 321 RIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN 398 (960)
T ss_dssp TSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH
T ss_pred CcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH
Confidence 5544443332123344444 2221 0 111 346677778887775433 11111
Q ss_pred cCChHHHHHHhhc---cCCcchhhHHHHHHHHHHHhcCh---hhhccc-----chHHH----HHHhhccC---ChHHHHH
Q 003146 430 SGIVSPLLQLLFS---VTSVLMTLREPASAILARIAQSE---SILVNK-----DVAQQ----MLSLLNLC---SPTIQYH 491 (844)
Q Consensus 430 ~g~v~~Lv~lL~~---~~~~~~~l~~~a~~~L~~l~~~~---~~l~~~-----~~i~~----Lv~lL~~~---~~~~~~~ 491 (844)
.+++.+.+.+.. ........++.|..++..++... ...... ...+. ++..+.+. +|.+|..
T Consensus 399 -~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~ 477 (960)
T 1wa5_C 399 -IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD 477 (960)
T ss_dssp -HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred -HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHH
Confidence 112223333331 11122456789999999997642 100111 23333 33345555 8899999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhh-----------hHHHHHHhchhhH
Q 003146 492 LLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDV-----------YEELAEQLGDKYL 560 (844)
Q Consensus 492 a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~-----------~~~i~~~l~~~~l 560 (844)
|++++..++..-. +++ -...++.++..+.++++.|+..|+.+|.++.... .+.+..++ +..+
T Consensus 478 a~~~lg~~~~~~~-~~~-----l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l-~~ll 550 (960)
T 1wa5_C 478 AIKYIYTFRNQLT-KAQ-----LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST-EILL 550 (960)
T ss_dssp HHHHHHHTGGGSC-HHH-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH-HHHH
T ss_pred HHHHHHHHHhhCC-HHH-----HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH-HHHH
Confidence 9999999987642 222 1225788888888888999999999999987631 11121111 2256
Q ss_pred HHHHHHhcCC--------CCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHH
Q 003146 561 NILVDITLSS--------TSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGIL 632 (844)
Q Consensus 561 ~~Lv~lL~~~--------~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL 632 (844)
+.|+.++... .......+...++..+...-..... ..++.|...+....... ....+...+..++
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-----~l~~~L~~~l~~~~~~~--~~~~~~~~~~e~l 623 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-----QLLAQFIEIVTIMAKNP--SNPRFTHYTFESI 623 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHHHHHHHTTSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHhCC--CCcHHHHHHHHHH
Confidence 6677777653 1111112222222222211111111 12234444443210000 0112333344444
Q ss_pred HhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 003146 633 IRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQ 680 (844)
Q Consensus 633 ~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~ 680 (844)
..+....+++... -.....+|.+..+|+....+....+...++.+..
T Consensus 624 ~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 624 GAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 4443322333222 2344577899999877655555555556665553
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.87 E-value=0.00066 Score=62.97 Aligned_cols=219 Identities=13% Similarity=0.154 Sum_probs=149.7
Q ss_pred hCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHH
Q 003146 514 ENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKA 593 (844)
Q Consensus 514 ~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~ 593 (844)
+..++..++.+|.++-=.|+.+|..++..++...++.+ +..+..|+.+++.+.........+.+++.++.-.|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~-----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY-----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 44578899999998888899999999999987666432 2245567777776666544344555566555446654
Q ss_pred HHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 003146 594 TELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASI 673 (844)
Q Consensus 594 ~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~ 673 (844)
.. +.+|.|..-.+-++ +..+-+...+|..+.. .+|+... +++.-+..++.+.+..-|-.|..
T Consensus 105 v~-----~vVp~lfanyrigd-------~kikIn~~yaLeeIar-anP~l~~-----~v~rdi~smltskd~~Dkl~aLn 166 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGD-------EKTKINVSYALEEIAK-ANPMLMA-----SIVRDFMSMLSSKNREDKLTALN 166 (253)
T ss_dssp HH-----HHHHHHHHHSCCCS-------HHHHHHHHHHHHHHHH-HCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHH
T ss_pred HH-----hhHHHHHHHHhcCC-------ccceecHHHHHHHHHH-hChHHHH-----HHHHHHHHHhcCCChHHHHHHHH
Confidence 33 23455555554443 2466688888887776 3565443 33455778888888777777777
Q ss_pred HHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcc
Q 003146 674 SLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQD 753 (844)
Q Consensus 674 aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~ 753 (844)
.++-++.+..... .--++.|..+|.++|+-||..|..+|.+++.-
T Consensus 167 Fi~alGen~~~yv-----------------------------------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 167 FIEAMGENSFKYV-----------------------------------NPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHTCCTTTHHHH-----------------------------------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccCcccc-----------------------------------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 7777765544311 12468999999999999999999999999976
Q ss_pred ccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 003146 754 ETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIE 798 (844)
Q Consensus 754 ~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~ 798 (844)
.. + ... .|...++-+.+.+..++++....|.++.-.+
T Consensus 212 np--k-lRk-----ii~~kl~e~~D~S~lv~~~V~egL~rl~l~e 248 (253)
T 2db0_A 212 ND--K-LRK-----VVIKRLEELNDTSSLVNKTVKEGISRLLLLE 248 (253)
T ss_dssp CH--H-HHH-----HHHHHHHHCCCSCHHHHHHHHHHHHHHHHC-
T ss_pred CH--H-HHH-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 52 1 111 2444555567888999999999999887543
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.84 E-value=0.009 Score=65.07 Aligned_cols=343 Identities=15% Similarity=0.191 Sum_probs=194.4
Q ss_pred cCchHHHHHHhhc-CCHHHHHHHHHHHHHhhcCcc---cHHHH-HHcCCh-HHHHHHhhccCCcchhhHHHHHHHHHHHh
Q 003146 389 DGAIEPLVRMFRV-GKLEAKLSALNALQNLSLLAE---NIQRL-VISGIV-SPLLQLLFSVTSVLMTLREPASAILARIA 462 (844)
Q Consensus 389 ~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~---~~~~i-~~~g~v-~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~ 462 (844)
..++..++.+|.. .+.++.+..+..+.-|...+. .+..+ .+..-. ..+....... +.......+..++..++
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~--dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKG--DFQTVLISGFNVVSLLV 153 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCS--SHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcc--cchHHHHHHHHHHHHHh
Confidence 4566788888875 456788888877777776543 33333 332222 1233222221 22333455555555554
Q ss_pred cChhhhcccchHHH------HHHhhcc-CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCc--HHHHHHHhcc------
Q 003146 463 QSESILVNKDVAQQ------MLSLLNL-CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGA--IHLLLPFLME------ 527 (844)
Q Consensus 463 ~~~~~l~~~~~i~~------Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~--i~~Lv~ll~~------ 527 (844)
.... .+.+.++. ++..+.. ++...+.-++++|..|.+. +.+|..+...++ ++.++.++..
T Consensus 154 ~~~~--~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~---~~~R~~f~~~~~~~~~~l~~il~~~~~~~~ 228 (480)
T 1ho8_A 154 QNGL--HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATDSQL 228 (480)
T ss_dssp STTT--CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred ccCC--ccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc---hhHHHHHHHcccchhHHHHHHHHHhhcccc
Confidence 3221 12233333 3444544 3455677899999999987 899999886543 6666554331
Q ss_pred ---------C--CHHHHHHHHHHHHHhhhhhhHHHHHHhchh---hHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCH--
Q 003146 528 ---------T--NANIRAAALNLVCTLSKDVYEELAEQLGDK---YLNILVDITLSSTSENEKAAAVGILSNLPVSNK-- 591 (844)
Q Consensus 528 ---------~--~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~---~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~-- 591 (844)
+ ...++..++-++|.|+.... +.+.+... .+..|+.+++.+..+.+...+..+|.|+....+
T Consensus 229 ~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~--~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~ 306 (480)
T 1ho8_A 229 ATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV--FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ 306 (480)
T ss_dssp ----------CCHHHHHHHHHHHHHHHTTSHH--HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccccccccCCCccHHHHHHHHHHHHHHHcCHH--HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchh
Confidence 1 23567888899999876533 33443333 335678888887888888888999999977552
Q ss_pred --HH-HHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 003146 592 --KA-TELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAK 668 (844)
Q Consensus 592 --~~-~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk 668 (844)
.. .+.+...++ +.+++.|..... .|+++...+.. ....|-+-.+.-+.--+
T Consensus 307 ~~~~~~~~~~~~~~-l~~l~~L~~rk~-----------------------~Dedl~edl~~--L~e~L~~~~~~ltsfDe 360 (480)
T 1ho8_A 307 HKKVIKQLLLLGNA-LPTVQSLSERKY-----------------------SDEELRQDISN--LKEILENEYQELTSFDE 360 (480)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHSSCC-----------------------SSHHHHHHHHH--HHHHHHHHHHTCCHHHH
T ss_pred hhhHHHHHHHHccc-hHHHHHHhhCCC-----------------------CcHHHHHHHHH--HHHHHHHHHHhcccHHH
Confidence 21 222332333 445555544321 23333221110 00111111111111111
Q ss_pred HHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccc--------cCcccchHhhhcCCchHHHHhhcC------
Q 003146 669 SSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGY--------CFVKSTFCLVKAGAVSPLIQVLEG------ 734 (844)
Q Consensus 669 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~--------~~~~~~~~l~~~~ai~~Lv~lL~~------ 734 (844)
..+-.--+.|. =.|+|..- ...+..+ ..+..|+++|.+
T Consensus 361 Y~~El~sG~L~-----------------------WSP~H~se~FW~ENa~kf~e~~~-----~llk~L~~iL~~~~~~~~ 412 (480)
T 1ho8_A 361 YVAELDSKLLC-----------------------WSPPHVDNGFWSDNIDEFKKDNY-----KIFRQLIELLQAKVRNGD 412 (480)
T ss_dssp HHHHHHHTCCC-----------------------CCGGGGCHHHHHHHSGGGSSGGG-----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcc-----------------------cCCCccchhHHHHHHHHHHhcch-----HHHHHHHHHHhhhccccc
Confidence 11100001111 12344320 0112223 356889999973
Q ss_pred ----CChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 003146 735 ----KEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFR 796 (844)
Q Consensus 735 ----~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~ 796 (844)
.|+.+...|+.=|+.++... +.|...+.+.||=..+.+++.++|+++|..|+.+++++..
T Consensus 413 ~~~s~d~~~laVAc~Digefvr~~--P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 413 VNAKQEKIIIQVALNDITHVVELL--PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHC--TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCcceEEeecccHHHHHHHC--cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 36777877888888888654 3577888999998889999999999999999999998864
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00013 Score=74.37 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=131.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHH-hhcC-chhhhhhhh-cCchHHHHHHh-hcCCHHHHHHHHHHHHHhhcCcc--cHH-H
Q 003146 354 LVQYLKEGSDMSKILMATALSR-MELT-DQSRASLGE-DGAIEPLVRMF-RVGKLEAKLSALNALQNLSLLAE--NIQ-R 426 (844)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~--~~~-~ 426 (844)
+-+.+.+.++..|..+...|.. +..+ ......-.+ ...+..|.+.+ ++.+..++..|+.+|..|+..-. .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566788888889899888888 7632 211100111 24567788888 78899999999999999995321 111 1
Q ss_pred HHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--hhhc--ccchHHHHHHhhccCChHHHHHHHHHHHHhhcC
Q 003146 427 LVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--SILV--NKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAH 502 (844)
Q Consensus 427 i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--~~l~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 502 (844)
.. .-++|++++.+.+.. ..+++.+..+|..++..- .... -...++.|+..+++.+|.+|+.++.+|..++..
T Consensus 101 y~-~~llp~ll~~l~dkk---~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKK---PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HH-HHHHHHHHHGGGCCC---HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 11 225788888887654 347788888777776632 1111 235788899999999999999999999998866
Q ss_pred CCh--hHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhh
Q 003146 503 SSA--SNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDV 547 (844)
Q Consensus 503 ~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~ 547 (844)
.+. ..... ......++.|..++.+.++++|..|..++..+.+..
T Consensus 177 ~~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 177 EKDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp CCSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 431 11111 112568999999999999999999999998776543
No 84
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.82 E-value=0.018 Score=71.07 Aligned_cols=469 Identities=10% Similarity=0.027 Sum_probs=235.7
Q ss_pred CHHHHHHHhC-CCCchHHHHHHHHHHHhHhc-Chh----hHHHHhcCCcHHHHHHHhcCCHHHHHHHHHHHHHccCCChh
Q 003146 226 IIAVLLNRLG-SSKPYNRLIMIQILRNLASE-NAD----YKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAV 299 (844)
Q Consensus 226 ~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~-~~~----~~~~i~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~~ 299 (844)
.++.+..+|. +.+.++|..|+.+|++.+.. |.. .+..+. ...+..+...-..+..+|.+...+|..+++..-.
T Consensus 40 ~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir-~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p 118 (971)
T 2x1g_F 40 AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELK-QKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG 118 (971)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677775 45778999999999998764 322 122221 1122222222212455788888888877665321
Q ss_pred HHHHhhhhCcHHHHHHhhcCC------ChHHHHHHHHHHHHhccC-----Ccc-HHHHHH--cCChHHHHHHhc----cC
Q 003146 300 WRRIGRIQGCIVMLVSMLSGN------DPVASHDAGKLLNALSSN-----TQN-ALHMAE--AGYFKPLVQYLK----EG 361 (844)
Q Consensus 300 ~~~i~~~~g~i~~Lv~lL~s~------d~~~~~~A~~~L~nLs~~-----~~~-~~~i~~--~g~i~~Lv~~L~----~~ 361 (844)
.-.+.++.|+.+++++ ++...+.+..+|..++.. +.. +..+.+ ...++.++.++. ..
T Consensus 119 -----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~ 193 (971)
T 2x1g_F 119 -----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQ 193 (971)
T ss_dssp -----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2367888999988765 566778888888877631 112 211111 234555555442 11
Q ss_pred -CH-------HHHHHHHHHHHHhhc---CchhhhhhhhcCchHHHHHHhh----------------cCCHHHHHHHHHHH
Q 003146 362 -SD-------MSKILMATALSRMEL---TDQSRASLGEDGAIEPLVRMFR----------------VGKLEAKLSALNAL 414 (844)
Q Consensus 362 -~~-------~~~~~aa~~L~~Ls~---~~~~~~~i~~~g~i~~Lv~lL~----------------~~~~~~~~~A~~aL 414 (844)
++ ..+..+..++..... .+.. .....++.+.. |. +.++..++.|+.+|
T Consensus 194 ~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 268 (971)
T 2x1g_F 194 MNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTM 268 (971)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHH
Confidence 11 455666666655332 1211 22334455554 31 13567899999999
Q ss_pred HHhhcCcc--cHHHHHHcCChHHHHHHhhc-----cCCcc--hhhHHHHHHHHHHHhcCh-hhhc---------ccc---
Q 003146 415 QNLSLLAE--NIQRLVISGIVSPLLQLLFS-----VTSVL--MTLREPASAILARIAQSE-SILV---------NKD--- 472 (844)
Q Consensus 415 ~nLs~~~~--~~~~i~~~g~v~~Lv~lL~~-----~~~~~--~~l~~~a~~~L~~l~~~~-~~l~---------~~~--- 472 (844)
..+...++ ....++. ..+|.++.+... .+.+. .......+.++..++... ..+. ..+
T Consensus 269 ~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 347 (971)
T 2x1g_F 269 VNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH 347 (971)
T ss_dssp HHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH
Confidence 99987533 2222222 133444443221 11111 134455566666555331 2222 112
Q ss_pred -hHHHHHHhhcc-----CChHHHHHHHHHHHHhhcCC-------ChhHHHHHHHh--CCcHHHHHHHhccC--------C
Q 003146 473 -VAQQMLSLLNL-----CSPTIQYHLLHALNSIAAHS-------SASNVRRKMKE--NGAIHLLLPFLMET--------N 529 (844)
Q Consensus 473 -~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~-------~~~~~~~~i~~--~g~i~~Lv~ll~~~--------~ 529 (844)
.++.++.+... .++++...++..+..++... ........+.. ...++.++..+.-+ +
T Consensus 348 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d 427 (971)
T 2x1g_F 348 RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS 427 (971)
T ss_dssp HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC
T ss_pred HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC
Confidence 23344444333 36778888888887776410 00111111111 12444555544321 1
Q ss_pred H-------HHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHh-cCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCC
Q 003146 530 A-------NIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDIT-LSSTSENEKAAAVGILSNLPVSNKKATELLKKTN 601 (844)
Q Consensus 530 ~-------~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL-~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~ 601 (844)
+ ..|..+..+|..++...++.+...+.. .+...+... .++.+...+.++..+++.++.+-.... ..
T Consensus 428 ~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~-~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~ 501 (971)
T 2x1g_F 428 SDDLECFRCYRQDISDTFMYCYDVLNDYILEILAA-MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KR 501 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH-HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------C
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hH
Confidence 1 345666667766654433222222111 111111111 112445677788888888876433211 23
Q ss_pred ChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC--CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 003146 602 LLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS--DKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLS 679 (844)
Q Consensus 602 ~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls 679 (844)
.++.++.++..-... + ....++..+++++++++..- +++.. ..++|.|+..| + +.++..|+.++.+|.
T Consensus 502 ~l~~l~~~l~~l~~~-d-~~~~vr~~a~~~l~~~~~~l~~~~~~l-----~~vl~~l~~~l-~--~~v~~~A~~al~~l~ 571 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYE-K-LNVKLLGTALETMGSYCNWLMENPAYI-----PPAINLLVRGL-N--SSMSAQATLGLKELC 571 (971)
T ss_dssp HHHHHHHHHHHSCTT-T-SCHHHHHHHHHHHHHTHHHHC----CH-----HHHHHHHHHHH-H--SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-c-cCHHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHh-C--hHHHHHHHHHHHHHH
Confidence 455555544221100 0 12357889999999887531 12111 13456666666 3 779999999999999
Q ss_pred hcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcC--CChhhHHHHHHHHHhhhcc
Q 003146 680 QNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEG--KEREADETVLGALASLLQD 753 (844)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~--~~~~v~~~A~~AL~~L~~~ 753 (844)
......- .-.-...+..|..++.. -+...+..+..|++.++..
T Consensus 572 ~~~~~~l-------------------------------~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 572 RDCQLQL-------------------------------KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHCHHHH-------------------------------HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhc-------------------------------cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 6432210 00011234555566665 3578999999999998863
No 85
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.63 E-value=0.24 Score=60.76 Aligned_cols=491 Identities=14% Similarity=0.092 Sum_probs=245.8
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhC-CCCchHHHHHHHHHHHhHhc-Chh---
Q 003146 185 IDDVMLQLK-HGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLG-SSKPYNRLIMIQILRNLASE-NAD--- 258 (844)
Q Consensus 185 i~~lv~~L~-~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~-~~~--- 258 (844)
+..++..+. +.+......|-+.+..+-..|. .++.+..+|. +.+..+|.-++.+|++.+.. |..
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~----------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQ----------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTT----------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHH----------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 344444432 3444445555566766666553 3455666675 45778999999999998764 422
Q ss_pred -hHHHHhcCCcHHHHHHHhcC----CHHHHHHHHHHHHHccCC--ChhHHHHhhhhCcHHHHHHhhcC-----CChHHHH
Q 003146 259 -YKEKMANVGSLSALVKSLTR----DVEEQREAVGLLLDLSDL--PAVWRRIGRIQGCIVMLVSMLSG-----NDPVASH 326 (844)
Q Consensus 259 -~~~~i~~~g~i~~Lv~~L~~----~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~s-----~d~~~~~ 326 (844)
.+..+. ..+++.+.. +...+.+.+.++..+++. +.. -.+.++.|+.++++ +++...+
T Consensus 96 ~~~~~ir-----~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~------Wp~~l~~l~~~~~~~~~~~~~~~~~~ 164 (963)
T 2x19_B 96 DQYESLK-----AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA------WPCAVADMVRLFQAEDSPVDGQGRCL 164 (963)
T ss_dssp GGHHHHH-----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT------STTHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc------cchHHHHHHHHHhhhccCCCcHHHHH
Confidence 122221 223333322 455788877778777664 322 26788899998876 3566778
Q ss_pred HHHHHHHHhccC---C---ccHHHHHH---cCChHHHH----HHhccCC--HHHHHHHHHHHHHhhcCchhhhhhhhcCc
Q 003146 327 DAGKLLNALSSN---T---QNALHMAE---AGYFKPLV----QYLKEGS--DMSKILMATALSRMELTDQSRASLGEDGA 391 (844)
Q Consensus 327 ~A~~~L~nLs~~---~---~~~~~i~~---~g~i~~Lv----~~L~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~ 391 (844)
.+..+|..++.. . ..++.-.+ ...++.++ ..+.... ......+..++......... .......
T Consensus 165 ~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~--~~~~~~l 242 (963)
T 2x19_B 165 ALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP--LQDCEAL 242 (963)
T ss_dssp HHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC--GGGTHHH
T ss_pred HHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC--cccchHH
Confidence 888888887631 1 11111111 12344444 3443332 23455555665433221111 1111345
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc--cHHHHH----H--cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhc
Q 003146 392 IEPLVRMFRVGKLEAKLSALNALQNLSLLAE--NIQRLV----I--SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQ 463 (844)
Q Consensus 392 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--~~~~i~----~--~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~ 463 (844)
++.+...+. ++..+..|+.+|..+...+. .....+ . .+..+.+...+...+ .......+.++..++.
T Consensus 243 l~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d---~~~~~~~~~l~~~~~~ 317 (963)
T 2x19_B 243 IQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD---METSHGICRIAVALGE 317 (963)
T ss_dssp HHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 666666664 56788999999999987532 111111 1 111222222222111 1233444455555543
Q ss_pred Ch-hhhc----cc----chHHHHHHhhcc-----CChHHHHHHHHHHHHhhcCCC---h---hHHHHHHHh--CCcHHHH
Q 003146 464 SE-SILV----NK----DVAQQMLSLLNL-----CSPTIQYHLLHALNSIAAHSS---A---SNVRRKMKE--NGAIHLL 521 (844)
Q Consensus 464 ~~-~~l~----~~----~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~---~---~~~~~~i~~--~g~i~~L 521 (844)
.. ..+. .. ..++.++..... .++.+...++.....++.... . ......+.. ...++.+
T Consensus 318 ~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 318 NHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 31 1111 11 223334443332 244455555555555544100 0 011111110 1133444
Q ss_pred HHHhccCCH---------------HHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhc---CCCCHHHHHHHHHHH
Q 003146 522 LPFLMETNA---------------NIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITL---SSTSENEKAAAVGIL 583 (844)
Q Consensus 522 v~ll~~~~~---------------~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~---~~~~~~~~~~a~~~L 583 (844)
+.-+..+++ +.|..+..+|..++...+..+... .++.+-..+. ++.+...+.+++.++
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~----~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSN----LYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHH----HHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444432211 224555556655543333222111 1222223331 245667777778888
Q ss_pred hcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccC
Q 003146 584 SNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSE 663 (844)
Q Consensus 584 ~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 663 (844)
+.++.+-.. .....++.++..+..-.. ....++..+++++++++....... -.-..+++.|+..|++
T Consensus 474 ~~i~~~~~~-----~~~~~l~~l~~~l~~l~~----~~~~vr~~~~~~l~~~~~~l~~~~---~~l~~vl~~l~~~l~~- 540 (963)
T 2x19_B 474 QSIAETIDV-----NYSDVVPGLIGLIPRISI----SNVQLADTVMFTIGALSEWLADHP---VMINSVLPLVLHALGN- 540 (963)
T ss_dssp HHHTTSCCS-----SCCSHHHHHHHHGGGSCC----CSHHHHHHHHHHHHHTHHHHHHCH---HHHTTTHHHHHHHTTC-
T ss_pred HHHHhhcCc-----hhhHHHHHHHHHHHhCCC----CcHHHHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHhCC-
Confidence 777653221 112345555555432111 123478899999999875211110 1124678888888865
Q ss_pred CHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcC--CChhhHH
Q 003146 664 SVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEG--KEREADE 741 (844)
Q Consensus 664 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~--~~~~v~~ 741 (844)
+.++..|+.++.+++......- .| + -...+..|..++.. -+...+.
T Consensus 541 -~~V~~~A~~al~~l~~~~~~~l----------~p------------------~---~~~il~~l~~~l~~~~~~~~~~~ 588 (963)
T 2x19_B 541 -PELSVSSVSTLKKICRECKYDL----------PP------------------Y---AANIVAVSQDVLMKQIHKTSQCM 588 (963)
T ss_dssp -GGGHHHHHHHHHHHHHHTGGGC----------TT------------------T---HHHHHHHHHHHHHTTCSCHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHH----------Hh------------------h---HHHHHHHHHHHhccCCCChHHHH
Confidence 7899999999999996433210 00 0 01233445555554 3568899
Q ss_pred HHHHHHHhhhc
Q 003146 742 TVLGALASLLQ 752 (844)
Q Consensus 742 ~A~~AL~~L~~ 752 (844)
.+..|++.++.
T Consensus 589 ~~~eai~~i~~ 599 (963)
T 2x19_B 589 WLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999885
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.62 E-value=0.0041 Score=74.62 Aligned_cols=298 Identities=14% Similarity=0.127 Sum_probs=179.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc----cHHHHHH
Q 003146 354 LVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE----NIQRLVI 429 (844)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----~~~~i~~ 429 (844)
+++.+...+...+..++..+.++...+..-..+ ..+.+..|.+.+.+.... +.|+.++..|+.... .-..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDV-PEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSC-CHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 444455433334455666777765543111111 136777788887765443 899999999995432 222233
Q ss_pred cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC--hhhhcccchHHHHHHhhccC-ChHHHHHHHHHHHHhhcCCChh
Q 003146 430 SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS--ESILVNKDVAQQMLSLLNLC-SPTIQYHLLHALNSIAAHSSAS 506 (844)
Q Consensus 430 ~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~--~~~l~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~ 506 (844)
+.+|.++....+.. ..+++.|..++..+... +..+ ...++.|+..|.++ .+..+..|+.++..|+... ..
T Consensus 95 -~~~~~~~~~~~dk~---~~v~~aa~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~ 167 (986)
T 2iw3_A 95 -QLVPAICTNAGNKD---KEIQSVASETLISIVNAVNPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD 167 (986)
T ss_dssp -TTHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSCGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH
T ss_pred -HHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH
Confidence 56777777766554 34677766666655543 2222 46788888888765 6899999999999998653 12
Q ss_pred HHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhh-HHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 003146 507 NVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVY-EELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSN 585 (844)
Q Consensus 507 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~-~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~ 585 (844)
..... -...+|.+-..+.+..++|+..|..++..++.-.. .+ -+..++.|++
T Consensus 168 ~~~~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-----~~~~~~~~~~-------------------- 220 (986)
T 2iw3_A 168 QVALR--MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQ-------------------- 220 (986)
T ss_dssp HHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-----TGGGHHHHHH--------------------
T ss_pred HHHHh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-----hhhhHHHHHH--------------------
Confidence 22222 23478888888888889999888887766553221 11 1123444444
Q ss_pred CCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 003146 586 LPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESV 665 (844)
Q Consensus 586 L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 665 (844)
.+.+++. ...++..|..-|+-.+.+-.. + .=.+|.|.+-|...+.
T Consensus 221 -----------------------~~~~p~~---------~~~~~~~l~~~tfv~~v~~~~-l--~~~~p~l~r~l~~~~~ 265 (986)
T 2iw3_A 221 -----------------------CIADPTE---------VPETVHLLGATTFVAEVTPAT-L--SIMVPLLSRGLNERET 265 (986)
T ss_dssp -----------------------HHHCTTH---------HHHHHHHHTTCCCCSCCCHHH-H--HHHHHHHHHHHTSSSH
T ss_pred -----------------------HhcChhh---------hHHHHHHhhcCeeEeeecchh-H--HHHHHHHHhhhccCcc
Confidence 4433321 113344444333332211110 0 1246888899988899
Q ss_pred HHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhc-CCChhhHHHHH
Q 003146 666 VAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLE-GKEREADETVL 744 (844)
Q Consensus 666 ~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~-~~~~~v~~~A~ 744 (844)
.+++.++..+.|++.-..+-. ...-.-...+|.|-+..+ -.+|++|+.|.
T Consensus 266 ~~~r~~~~~~~n~~~lv~~~~-----------------------------~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 266 GIKRKSAVIIDNMCKLVEDPQ-----------------------------VIAPFLGKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCCHH-----------------------------HHHHHHTTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred hhheeeEEEEcchhhhcCCHH-----------------------------HHhhhhhhhhhHHHHHhhccCCHHHHHHHH
Confidence 999999999999997544311 011112334566666554 57999999999
Q ss_pred HHHHhhhcc
Q 003146 745 GALASLLQD 753 (844)
Q Consensus 745 ~AL~~L~~~ 753 (844)
.|+.+|...
T Consensus 317 ~a~~~l~~~ 325 (986)
T 2iw3_A 317 RALKTLRRV 325 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999643
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.57 E-value=0.0043 Score=74.42 Aligned_cols=289 Identities=12% Similarity=0.082 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhcCh--hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCCh-hHHHHHHHhCCcHHHHHHHhccC
Q 003146 452 EPASAILARIAQSE--SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSA-SNVRRKMKENGAIHLLLPFLMET 528 (844)
Q Consensus 452 ~~a~~~L~~l~~~~--~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 528 (844)
..++..++++..+. ......+.+..+...+...... +.|+.++..||...+. ...-..+. +.++.++..+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk 107 (986)
T 2iw3_A 32 HEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNK 107 (986)
T ss_dssp HHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCC
Confidence 45666667665543 1112235667777777654333 9999999999966532 12222222 4788888888898
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHH
Q 003146 529 NANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLIS 608 (844)
Q Consensus 529 ~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ 608 (844)
...||..|..++..+....+.... ...++.|+..+..+..-..+.+|..++..|+.
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~-------------------- 163 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD-------------------- 163 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH--------------------
Confidence 899999888887766554442211 12456666666544445555555555544422
Q ss_pred HhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCcccccc
Q 003146 609 AATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKS 688 (844)
Q Consensus 609 ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~ 688 (844)
.. ++ +-...-..+||.+...+.+..++|+..|..++..++.--.|.-
T Consensus 164 -----------------------------~~-~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-- 210 (986)
T 2iw3_A 164 -----------------------------AA-KD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-- 210 (986)
T ss_dssp -----------------------------HS-HH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT--
T ss_pred -----------------------------Hh-HH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc--
Confidence 11 11 1112223578999999999999999999999998875333311
Q ss_pred ccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCC
Q 003146 689 KISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSG 768 (844)
Q Consensus 689 ~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~ 768 (844)
-..-||.|+..+.+++. ...++..|..-.+-..+..-+-.+ -
T Consensus 211 --------------------------------~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~ 252 (986)
T 2iw3_A 211 --------------------------------IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----M 252 (986)
T ss_dssp --------------------------------TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----H
T ss_pred --------------------------------hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----H
Confidence 12357999999997744 444566666544433222212222 1
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhH---hhccccchhHHhhhh-cCCCCchHHHHHHHHHHhhhhc
Q 003146 769 TQAIIKVLESGNAKAQEKALWILERIFRIEEHRV---KYGESAQVVLIDLAQ-NGDSRLKPAVAKLLAQLELLQA 839 (844)
Q Consensus 769 i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~---~~~~~a~~~Lv~ll~-~~~~~~~~~aa~~L~~l~~~~~ 839 (844)
+|-|.+=|..++..++++++-+++++++..+.-+ .|-...-+-|..... -.||++|..|.+++..|....+
T Consensus 253 ~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 253 VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 4455566677788999999999999999865432 222222233333333 5679999999999999966543
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.54 E-value=0.033 Score=68.58 Aligned_cols=488 Identities=11% Similarity=0.082 Sum_probs=235.5
Q ss_pred CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhc-CCChHHHHHHHHHHHHhcc------CCccHHHHHHcCCh
Q 003146 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLS-GNDPVASHDAGKLLNALSS------NTQNALHMAEAGYF 351 (844)
Q Consensus 279 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~------~~~~~~~i~~~g~i 351 (844)
+.+.|++|-..|.++.+++ ++.+.+..+|. +.++.++..|+.+|.|... .++.+..+ +...+
T Consensus 20 d~~~r~~A~~~L~~~~~~p----------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~ll 88 (971)
T 2x1g_F 20 NSQNQAITHEWLTDAEASP----------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL-KQKIL 88 (971)
T ss_dssp TTTC----CHHHHHTTTST----------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCH----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH-HHHHH
Confidence 4456777777777765544 44555566664 5678889999999998753 12233333 33344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcC------CHHHHHHHHHHHHHhhcC-----
Q 003146 352 KPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVG------KLEAKLSALNALQNLSLL----- 420 (844)
Q Consensus 352 ~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~~A~~aL~nLs~~----- 420 (844)
+.+.+.- .++..++...+.+|..++..+.. .=.+.++.|+..+.++ ++...+.++..|..++..
T Consensus 89 ~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 89 ESIVRFA-GGPKIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 4444432 34567888888888888765422 1156888999998875 566778888888877731
Q ss_pred cccHH-HHHH--cCChHHHHHHh----hccCCcc-----hhhHHHHHHHHHHHhc---ChhhhcccchHHHHHHhhc---
Q 003146 421 AENIQ-RLVI--SGIVSPLLQLL----FSVTSVL-----MTLREPASAILARIAQ---SESILVNKDVAQQMLSLLN--- 482 (844)
Q Consensus 421 ~~~~~-~i~~--~g~v~~Lv~lL----~~~~~~~-----~~l~~~a~~~L~~l~~---~~~~l~~~~~i~~Lv~lL~--- 482 (844)
+..+. .+.+ ...++.++.++ ....... ..++..++.++..... -+.. .....++.+.. +.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~ 241 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKC 241 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhh
Confidence 11111 1111 12345544444 3222110 1456777777765443 1211 22345555555 41
Q ss_pred -------------cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHH-------HhccCCH---HHHHHHHHH
Q 003146 483 -------------LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLP-------FLMETNA---NIRAAALNL 539 (844)
Q Consensus 483 -------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~-------ll~~~~~---~v~~~A~~~ 539 (844)
..+++.++.|+.+|..+...+...+....+.. .++.++. .+.+++. +.....+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 242 YWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFV--LIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp HSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHH--HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred ccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHH--HHHHHHHhHHHHHHHHhcccccchHHHHHHHHH
Confidence 14578999999999999875421111111111 2223322 1233342 566666666
Q ss_pred HHHhhhhhhHHHH-----------HHhchhhHHHHHHHhcC----CCCHHHHHHHHHHHhcCCC---------CCHHHHH
Q 003146 540 VCTLSKDVYEELA-----------EQLGDKYLNILVDITLS----STSENEKAAAVGILSNLPV---------SNKKATE 595 (844)
Q Consensus 540 L~~ls~~~~~~i~-----------~~l~~~~l~~Lv~lL~~----~~~~~~~~~a~~~L~~L~~---------~~~~~~~ 595 (844)
+..+.......+. ..+ ...++.++.+... ..++++...++..+..+.. .......
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~ 398 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWE 398 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 6655543332222 111 1234445554422 2234444444444433311 0011111
Q ss_pred HHHh--CCChHHHHHHhhcCCCCC-CC-Cc------hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhcc---
Q 003146 596 LLKK--TNLLPSLISAATSSTITK-TH-ST------PWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS--- 662 (844)
Q Consensus 596 ~l~~--~~~v~~L~~ll~~~~~~~-~~-~~------~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~--- 662 (844)
.+.. ...++.++..+..++... .. .. ...+..+..+|..++......+.. -+++.+.+.+.+
T Consensus 399 ~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~ 473 (971)
T 2x1g_F 399 YIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQR 473 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccC
Confidence 1110 133344444443222110 00 00 012233444444333321111111 122333344433
Q ss_pred --CCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhh---c--CC
Q 003146 663 --ESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVL---E--GK 735 (844)
Q Consensus 663 --~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL---~--~~ 735 (844)
.+...+..|..+++.++...... ....++.++.++ . +.
T Consensus 474 ~~~~w~~~eaal~~l~~iae~~~~~-----------------------------------~~~~l~~l~~~l~~l~~~d~ 518 (971)
T 2x1g_F 474 HPTHWTKLEACIYSFQSVAEHFGGE-----------------------------------EKRQIPRLMRVLAEIPYEKL 518 (971)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC-----------------------------------------CHHHHHHHHHHHSCTTTS
T ss_pred CCCcHHHHHHHHHHHHHHHhhcChh-----------------------------------hhHHHHHHHHHHHhcCcccc
Confidence 46678889999999987543220 012234444433 3 45
Q ss_pred ChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhh-hhHhhccccchhHHh
Q 003146 736 EREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEE-HRVKYGESAQVVLID 814 (844)
Q Consensus 736 ~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~-~~~~~~~~a~~~Lv~ 814 (844)
++.|+..++.+|+.+...-. ...+.+ ...++.++..+ + +.++..|.+++.++++... .-..|-..--..|.+
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~--~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLM--ENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC------CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHh--cCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 88999999999998875321 001111 01245566666 3 7799999999999986421 112222222235556
Q ss_pred hhhcCC--CCchHHHHHHHHHH
Q 003146 815 LAQNGD--SRLKPAVAKLLAQL 834 (844)
Q Consensus 815 ll~~~~--~~~~~~aa~~L~~l 834 (844)
++++++ ...+..+..++..+
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHH
Confidence 666643 34555555555544
No 89
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0018 Score=65.96 Aligned_cols=188 Identities=11% Similarity=0.097 Sum_probs=128.7
Q ss_pred HHHHHhCCCCchHHHHHHHHHHH-hHhcChhhHHHHhc-CCcHHHHHHHh-cC-CHHHHHHHHHHHHHccCC---ChhH-
Q 003146 229 VLLNRLGSSKPYNRLIMIQILRN-LASENADYKEKMAN-VGSLSALVKSL-TR-DVEEQREAVGLLLDLSDL---PAVW- 300 (844)
Q Consensus 229 ~l~~lL~s~~~~~~~~a~~~L~~-L~~~~~~~~~~i~~-~g~i~~Lv~~L-~~-~~~~~~~A~~~L~~Ls~~---~~~~- 300 (844)
.+-+.+.|.+...|..++..|.. ++.+++.....-.+ ...+..|.+.+ .+ +...+..|+.+|..++.. +.+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35677889999999999999999 87543221100011 12355667777 34 556788899999988752 2222
Q ss_pred HHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCC-ccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 003146 301 RRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNT-QNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT 379 (844)
Q Consensus 301 ~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~ 379 (844)
... .-.+|.++..+++..+.+++.+..+|..++..- +....-.-...++.|...|.+.++.+|..++.+|..+...
T Consensus 100 ~y~---~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYV---SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHH---HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 222 237899999999888999999888888876421 1100000012456778888888999999999999888754
Q ss_pred chh--hh--hhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 003146 380 DQS--RA--SLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 380 ~~~--~~--~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
... .. .......+|.|..++.+.++.+|..|..+|..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 11 11124789999999999999999999999988873
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.36 E-value=0.55 Score=57.52 Aligned_cols=517 Identities=10% Similarity=0.057 Sum_probs=253.2
Q ss_pred CCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCC------ChhHHHHhhh
Q 003146 235 GSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDL------PAVWRRIGRI 306 (844)
Q Consensus 235 ~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~------~~~~~~i~~~ 306 (844)
.+++++.+..|-..|..+- .. .++...+..+|.. +.++|..|+..|.+..+. ++.+..+-
T Consensus 35 ~~~~~~~r~~A~~~L~~~~-~~---------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir-- 102 (963)
T 2x19_B 35 YDPNIENKNLAQKWLMQAQ-VS---------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK-- 102 (963)
T ss_dssp HCCCHHHHHHHHHHHHHHH-HS---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH--
T ss_pred cCCCHHHHHHHHHHHHHHh-cC---------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH--
Confidence 3567778888888887763 22 3455566667754 567888888888876432 22333332
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccC--CccHHHHHHcCChHHHHHHhcc-----CCHHHHHHHHHHHHHhhcC
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSN--TQNALHMAEAGYFKPLVQYLKE-----GSDMSKILMATALSRMELT 379 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~~L~~-----~~~~~~~~aa~~L~~Ls~~ 379 (844)
...+..+... .+..+.++...+.++..+... +++. .+.++.|+..+++ ++......+..+|..+...
T Consensus 103 ~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~W-----p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 103 AQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAW-----PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcccc-----chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 2234444432 223577788888888877643 3322 3567788888876 2444555666666666531
Q ss_pred --c-----hhhhhhhh--cCchHHHH----HHhhcC--CHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccC
Q 003146 380 --D-----QSRASLGE--DGAIEPLV----RMFRVG--KLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVT 444 (844)
Q Consensus 380 --~-----~~~~~i~~--~g~i~~Lv----~lL~~~--~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~ 444 (844)
+ +.|..+.+ ...++.++ .++.+. +......++.++........... .....++.++..+..
T Consensus 177 ~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l~~~l~~-- 252 (963)
T 2x19_B 177 FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAAFAALQD-- 252 (963)
T ss_dssp HTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHHHHHTTS--
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHHHHHhCC--
Confidence 0 01111111 12344444 444332 22366777777755443111100 112334555555532
Q ss_pred CcchhhHHHHHHHHHHHhcChhhhcccch----HHHHHHh-------hccCChHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 003146 445 SVLMTLREPASAILARIAQSESILVNKDV----AQQMLSL-------LNLCSPTIQYHLLHALNSIAAHSSASNVRRKMK 513 (844)
Q Consensus 445 ~~~~~l~~~a~~~L~~l~~~~~~l~~~~~----i~~Lv~l-------L~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~ 513 (844)
..+++.|+.+|..+............ ++.++.+ +..++.+.....++.+..++.. +...+.
T Consensus 253 ---~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~-----~~~~l~ 324 (963)
T 2x19_B 253 ---SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGEN-----HSRALL 324 (963)
T ss_dssp ---TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred ---chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----hHHHHH
Confidence 24778999999998875311000111 1222221 2234445555556666665432 111221
Q ss_pred h--------CCcHHHHHHHhcc-----CCHHHHHHHHHHHHHhhhhhh-------HHHHHHhc---hhhHHHHHHHhcCC
Q 003146 514 E--------NGAIHLLLPFLME-----TNANIRAAALNLVCTLSKDVY-------EELAEQLG---DKYLNILVDITLSS 570 (844)
Q Consensus 514 ~--------~g~i~~Lv~ll~~-----~~~~v~~~A~~~L~~ls~~~~-------~~i~~~l~---~~~l~~Lv~lL~~~ 570 (844)
. ...++.++.+..+ .++++...+......+..... ........ ...++.++..+..+
T Consensus 325 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p 404 (963)
T 2x19_B 325 DQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404 (963)
T ss_dssp HCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 1244555555554 244566666666555544210 11111111 11233333333221
Q ss_pred CCH-------H---H----HHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCC-CCCCCchhHHHHHHHHHHhc
Q 003146 571 TSE-------N---E----KAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTI-TKTHSTPWLVESVAGILIRF 635 (844)
Q Consensus 571 ~~~-------~---~----~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~-~~~~~~~~l~e~a~~aL~~l 635 (844)
.+. + . +..+..+|..++. +.....++.+...+...-. .........+|.++.+++.+
T Consensus 405 ~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~--------~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i 476 (963)
T 2x19_B 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYE--------MLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSI 476 (963)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--------HHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHH
T ss_pred CcccccCCChhHHHHHHHHHHHHHHHHHHHHH--------HccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 111 1 1 1223333322211 1111223333333321100 00011234578888888888
Q ss_pred cCCCCHHHHHHHHHcCCHHHHHHHh---ccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccC
Q 003146 636 TDPSDKKLQQYSVQHGVIRLLVKLL---SSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCF 712 (844)
Q Consensus 636 ~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~ 712 (844)
+....... ...++.++..+ .++++.++..++++++.++.--...
T Consensus 477 ~~~~~~~~------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~--------------------------- 523 (963)
T 2x19_B 477 AETIDVNY------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH--------------------------- 523 (963)
T ss_dssp TTSCCSSC------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC---------------------------
T ss_pred HhhcCchh------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC---------------------------
Confidence 76532211 12334444443 3357889999999999988521110
Q ss_pred cccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhcccc--chhhhHHHHhcCChHHHHHHhhc--CCHHHHHHHH
Q 003146 713 VKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDET--WESGSNYLAKLSGTQAIIKVLES--GNAKAQEKAL 788 (844)
Q Consensus 713 ~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~--~~~~~~~i~~~g~i~~lv~ll~~--~~~~~~~~A~ 788 (844)
... -..+++.|+..|.+ +.|+..|+.||.+++.+-. .......| +..+..++.. -+...+....
T Consensus 524 ----~~~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~i-----l~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 524 ----PVM-INSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANI-----VAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp ----HHH-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHH-----HHHHHHHHHTTCSCHHHHHHHH
T ss_pred ----HHH-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHhccCCCChHHHHHHH
Confidence 011 13477888888865 8899999999999986431 11111111 3334455543 2567888888
Q ss_pred HHHHHHHhhh--hhhHhhccccchhHHhhhh----c-CCCCchHHHHHHHHHH
Q 003146 789 WILERIFRIE--EHRVKYGESAQVVLIDLAQ----N-GDSRLKPAVAKLLAQL 834 (844)
Q Consensus 789 ~~L~~i~~~~--~~~~~~~~~a~~~Lv~ll~----~-~~~~~~~~aa~~L~~l 834 (844)
.++..++... +....|-..--.++.+.++ . .+++.+......+..+
T Consensus 592 eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 592 QALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8898887532 2233332222234444332 2 2445555555555555
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.35 E-value=0.49 Score=58.59 Aligned_cols=459 Identities=12% Similarity=0.098 Sum_probs=229.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhC-CCCchHHHHHHHHHHHhHhc-Chh----
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLG-SSKPYNRLIMIQILRNLASE-NAD---- 258 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~-~~~---- 258 (844)
+..++..+.+++......|-..+..+-..|. .++.+..+|. +.+..+|.-|...|++.+.. |..
T Consensus 18 l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~----------~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNPD----------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSTT----------GGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHhCch----------HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 3444444444554444445556766666654 3445566664 55788999999999998764 432
Q ss_pred hHHHHhcCCcHHHHHHHhcC----------CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHH
Q 003146 259 YKEKMANVGSLSALVKSLTR----------DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDA 328 (844)
Q Consensus 259 ~~~~i~~~g~i~~Lv~~L~~----------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A 328 (844)
.+..+. ..++..+.+ +...+...+.++..+++.+-. ....+.++.|+.+++ .++..++.+
T Consensus 88 ~~~~ir-----~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~ 157 (1049)
T 3m1i_C 88 HRIGIR-----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENN 157 (1049)
T ss_dssp HHHHHH-----HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHH
Confidence 122221 234444432 123566666677766554111 113678889999886 566667777
Q ss_pred HHHHHHhccC-----Cc----cH-----HHHHHcCChHHH----HHHhcc-CCHHHHHHHHHHHHHhhc-Cchhhhhhhh
Q 003146 329 GKLLNALSSN-----TQ----NA-----LHMAEAGYFKPL----VQYLKE-GSDMSKILMATALSRMEL-TDQSRASLGE 388 (844)
Q Consensus 329 ~~~L~nLs~~-----~~----~~-----~~i~~~g~i~~L----v~~L~~-~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~ 388 (844)
..+|..|+.. .+ .+ ..+.+ .++.+ ...+.. ++..++..+..++.+... .+- ..+.+
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~--~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~ 233 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK--EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYE 233 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHS
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhh
Confidence 8888877621 11 11 22322 13333 444443 345667777777766433 221 12344
Q ss_pred cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC--ccc----HHHHHH--cCChHHHHH-----------HhhccCCcchh
Q 003146 389 DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL--AEN----IQRLVI--SGIVSPLLQ-----------LLFSVTSVLMT 449 (844)
Q Consensus 389 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~~----~~~i~~--~g~v~~Lv~-----------lL~~~~~~~~~ 449 (844)
...++.+...+. .++..+..|+.+|..+... ++. ...+.. .+.+..+.. .+...++....
T Consensus 234 ~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~ 312 (1049)
T 3m1i_C 234 TNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS 312 (1049)
T ss_dssp SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHH
T ss_pred hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHH
Confidence 556666663222 2788899999999998864 221 111111 112221211 11111111122
Q ss_pred hHHHHHHHHHHHhcCh-hhhcc--------cchHHHHHHhhccCChHHHHHHHHHHHHhhc----CCC-hhHHHHHHHhC
Q 003146 450 LREPASAILARIAQSE-SILVN--------KDVAQQMLSLLNLCSPTIQYHLLHALNSIAA----HSS-ASNVRRKMKEN 515 (844)
Q Consensus 450 l~~~a~~~L~~l~~~~-~~l~~--------~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~----~~~-~~~~~~~i~~~ 515 (844)
.....+..+..+...- ..+.. ...++.++......+.++...++.....++. .+. ...++..+..
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~- 391 (1049)
T 3m1i_C 313 FLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ- 391 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH-
Confidence 2233333443332211 11111 1224444444455677788888877777765 221 1112221111
Q ss_pred CcHHHHHHHhccC-------------------CH---HHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcC-CCC
Q 003146 516 GAIHLLLPFLMET-------------------NA---NIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLS-STS 572 (844)
Q Consensus 516 g~i~~Lv~ll~~~-------------------~~---~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~-~~~ 572 (844)
.++.++..+.-+ +. ..+..+..+|..++...+..+... .++.+-..+.. +.+
T Consensus 392 -Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~ 466 (1049)
T 3m1i_C 392 -LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEI----MISKLARQIDGSEWS 466 (1049)
T ss_dssp -HHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCC
T ss_pred -HHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHH----HHHHHHHHhCCCCCC
Confidence 233344433211 11 235566777777764433332222 12223333432 346
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHH-HHHHHHHhccCC--CCHHHHHHHHH
Q 003146 573 ENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVE-SVAGILIRFTDP--SDKKLQQYSVQ 649 (844)
Q Consensus 573 ~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e-~a~~aL~~l~~~--~~~~~~~~i~~ 649 (844)
...+.+++.+++.++..-......-.-...++.+..+..... ......+.. .+++++++++.. .+++. -
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~---~~~~~~~v~~~~~~~lgry~~~~~~~~~~-----l 538 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR---GKDNKAVVASDIMYVVGQYPRFLKAHWNF-----L 538 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC---SHHHHHHHHHHHHHHHHHCHHHHHHCHHH-----H
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHHhHHHH-----H
Confidence 677888899999887543221110000112333333221110 000112333 577888877642 12211 1
Q ss_pred cCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 003146 650 HGVIRLLVKLLSSESVVAKSSASISLAQLSQNS 682 (844)
Q Consensus 650 ~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~ 682 (844)
..+++.|+..++++++.|+..|+.++.+++...
T Consensus 539 ~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 235667777888889999999999999999753
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.13 E-value=0.015 Score=60.31 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=118.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH-hhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh----hh
Q 003146 393 EPLVRMFRVGKLEAKLSALNALQN-LSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE----SI 467 (844)
Q Consensus 393 ~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~----~~ 467 (844)
..+++-|.+++.+.++.++.-|.. ++.+.+-...++..+++..|+......+ ...+..++.+|.++.... .+
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~---gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD---HNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC---HHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC---hHHHHHHHHHHHHHHhccccccch
Confidence 345666677788889998888888 6667888899999999999999987764 346789999999998884 34
Q ss_pred hcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC--hhHHHHHHH----hC--CcHHHHHHHhc---cCCHHHHHHH
Q 003146 468 LVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS--ASNVRRKMK----EN--GAIHLLLPFLM---ETNANIRAAA 536 (844)
Q Consensus 468 l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~i~----~~--g~i~~Lv~ll~---~~~~~v~~~A 536 (844)
+.+...|..+..++.+..+.+...|+.+|..++...+ ...+.+.+. +. ...+.|+.+|. +++.+++.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 5577889999999998888899999999999987752 111222221 12 24789999997 7788999999
Q ss_pred HHHHHHhhhhhh
Q 003146 537 LNLVCTLSKDVY 548 (844)
Q Consensus 537 ~~~L~~ls~~~~ 548 (844)
..++..+-...+
T Consensus 278 mtLIN~lL~~ap 289 (339)
T 3dad_A 278 VTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHhcCC
Confidence 999877655433
No 93
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.02 E-value=0.023 Score=58.88 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=116.2
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhh
Q 003146 228 AVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRI 306 (844)
Q Consensus 228 p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~ 306 (844)
..+++.|.+++......++.-|+.+.+.+...-..++..+|+..|++.... +.+.+..++.++.+|-.+......++..
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 345566667777788888999998666666777888999999999999987 5678999999999998886666566555
Q ss_pred hCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc-cHHHHHHc--------C--ChHHHHHHhc---cCCHHHHHHHHHH
Q 003146 307 QGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ-NALHMAEA--------G--YFKPLVQYLK---EGSDMSKILMATA 372 (844)
Q Consensus 307 ~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~-~~~~i~~~--------g--~i~~Lv~~L~---~~~~~~~~~aa~~ 372 (844)
...|..+..++.+.+..+...|..+|.+++...+ +...+.++ | .+..|+.+|. .++.+.+.++...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 7789999999999999999999999999986443 43333221 1 3788999997 6788888887776
Q ss_pred HHHh
Q 003146 373 LSRM 376 (844)
Q Consensus 373 L~~L 376 (844)
+-.+
T Consensus 281 IN~l 284 (339)
T 3dad_A 281 INKT 284 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.79 E-value=0.55 Score=57.37 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=116.4
Q ss_pred HHHHHH-HHcCC-ChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhCCC---CchHHHHHHHHHHHhHhcChhh
Q 003146 185 IDDVML-QLKHG-DDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSS---KPYNRLIMIQILRNLASENADY 259 (844)
Q Consensus 185 i~~lv~-~L~~~-~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~s~---~~~~~~~a~~~L~~L~~~~~~~ 259 (844)
+..++. .+... +......|-+.+..+-+.|+ .+.....+|.++ +..++.-++.+|++.+...+..
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~----------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSST----------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT----------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 444453 33333 33455556666777666654 244556666543 6789999999999887632222
Q ss_pred -----HHHHhcCCcHHHHHHHhcC------CHHHHHHHHHHHHHccCC--ChhHHHHhhhhCcHHHHHHhhcCCCh-HHH
Q 003146 260 -----KEKMANVGSLSALVKSLTR------DVEEQREAVGLLLDLSDL--PAVWRRIGRIQGCIVMLVSMLSGNDP-VAS 325 (844)
Q Consensus 260 -----~~~i~~~g~i~~Lv~~L~~------~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~s~d~-~~~ 325 (844)
+..+. ..++..+.. +.-.+.+.+.++..+.+. +. ...+.++-|+.+++++++ ...
T Consensus 78 ~~~~~~~~lr-----~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~------~Wp~~i~~l~~~~~~~~~~~~~ 146 (980)
T 3ibv_A 78 SNLLELQMIR-----DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS------NWNDFFASLQGVIAASSQSEFS 146 (980)
T ss_dssp TSHHHHHHHH-----HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHHCCHHHH
T ss_pred hhHHHHHHHH-----HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc------cCchHHHHHHHHhcCCChhHHH
Confidence 22211 123333321 234677777777666543 22 136678888888876544 333
Q ss_pred HHHHHHHHHhcc---C-C--c-----c-----HHHHHHcC---ChHHHHHHhcc----CCHHHHHHHHHHHHHhhcCchh
Q 003146 326 HDAGKLLNALSS---N-T--Q-----N-----ALHMAEAG---YFKPLVQYLKE----GSDMSKILMATALSRMELTDQS 382 (844)
Q Consensus 326 ~~A~~~L~nLs~---~-~--~-----~-----~~~i~~~g---~i~~Lv~~L~~----~~~~~~~~aa~~L~~Ls~~~~~ 382 (844)
.....+|..++. + . . . +..|.+.. .++.+..+|.. .++.....+..+|.....- -.
T Consensus 147 ~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w-i~ 225 (980)
T 3ibv_A 147 NFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW-IN 225 (980)
T ss_dssp HHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SC
T ss_pred HHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh-cC
Confidence 444455553331 1 0 0 1 22232210 13333444433 5666666777777664432 11
Q ss_pred hhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 383 RASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
-..+...+.++.+..+|.+ +..+..|+.+|..+...
T Consensus 226 ~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 226 INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHS
T ss_pred HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHc
Confidence 2334456778888888864 78899999999988754
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.27 E-value=3.4 Score=50.54 Aligned_cols=216 Identities=13% Similarity=0.093 Sum_probs=124.4
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhh-cCCChHHHHHHHHHHHHhccC-----Ccc
Q 003146 269 LSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSML-SGNDPVASHDAGKLLNALSSN-----TQN 341 (844)
Q Consensus 269 i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~s~d~~~~~~A~~~L~nLs~~-----~~~ 341 (844)
++.++..+.+ +++.|+.|-..|..+-+++ ++...+..+| ++.++.++.-|+..|.+.... ++.
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 4445555544 4557778888887765554 3344444444 356888998888888877531 222
Q ss_pred HHHHHHcCChHHHHHHhccC-----CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 003146 342 ALHMAEAGYFKPLVQYLKEG-----SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQN 416 (844)
Q Consensus 342 ~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 416 (844)
.....+...+..+.+.-..+ ...++...+.++..++..+-.. .=++.++.++.++.+ ++......+..|..
T Consensus 88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~ 163 (1023)
T 4hat_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSS-SVNVCENNMIVLKL 163 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 22233334444444432221 2334555667777766543110 015778889998865 44556667777776
Q ss_pred hhcC---------cccHHH-----HHH--cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcC-h-hhhcccchHHHHH
Q 003146 417 LSLL---------AENIQR-----LVI--SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQS-E-SILVNKDVAQQML 478 (844)
Q Consensus 417 Ls~~---------~~~~~~-----i~~--~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~-~-~~l~~~~~i~~Lv 478 (844)
|+.. ...+.. +.. ..+++.+..+|..... ..+...++.++.....- + ..+.+.+.++.+.
T Consensus 164 L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~--~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGAS--SSLIVATLESLLRYLHWIPYRYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHH
Confidence 6532 111211 221 1233334444544332 34566777777776543 2 3455667888888
Q ss_pred -HhhccCChHHHHHHHHHHHHhhcC
Q 003146 479 -SLLNLCSPTIQYHLLHALNSIAAH 502 (844)
Q Consensus 479 -~lL~~~~~~~~~~a~~~L~~L~~~ 502 (844)
.++ +++..+..|+.+|..+...
T Consensus 242 ~~~L--~~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 242 TKFM--TSPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp THHH--HSHHHHHHHHHHHHHHHTS
T ss_pred HHHc--CCHHHHHHHHHHHHHHHcc
Confidence 777 4788999999999999873
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.25 E-value=3.6 Score=50.73 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhc-CCChHHHHHHHHHHHHhcc------CCccHHHHHHcCCh
Q 003146 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLS-GNDPVASHDAGKLLNALSS------NTQNALHMAEAGYF 351 (844)
Q Consensus 279 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~d~~~~~~A~~~L~nLs~------~~~~~~~i~~~g~i 351 (844)
+.+.|+.|-..|.++.+.+ ++...+..+|. +.++.++..|+..|.|... .++.+..+ +...+
T Consensus 29 ~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i-r~~ll 97 (1049)
T 3m1i_C 29 SGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI-RNFVV 97 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH-HHHHH
Confidence 5567778888887765544 34444555553 5688889999999988753 12223333 22233
Q ss_pred HHHHHHhccC-----CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-----c
Q 003146 352 KPLVQYLKEG-----SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-----A 421 (844)
Q Consensus 352 ~~Lv~~L~~~-----~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-----~ 421 (844)
..+...-..+ +..++...+.++..++..+-.. .=++.++.|+..+. .++..++.+..+|..|+.. .
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~ 173 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSA 173 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333221111 2456667777777776543110 01578889999986 5666677888888877731 1
Q ss_pred c----cH-----HHHHHc--CChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh--hhhcccchHHHHHHhhccCChHH
Q 003146 422 E----NI-----QRLVIS--GIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE--SILVNKDVAQQMLSLLNLCSPTI 488 (844)
Q Consensus 422 ~----~~-----~~i~~~--g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~--~~l~~~~~i~~Lv~lL~~~~~~~ 488 (844)
+ .+ ..+... .+++.+...+.... ...++..++.++.+...-- ..+.....++.+.+.+. .++.+
T Consensus 174 ~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~--~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~ 250 (1049)
T 3m1i_C 174 EQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS--SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDT 250 (1049)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhH
Confidence 1 11 112221 12223344444433 2346777888877654431 22223344554442221 25667
Q ss_pred HHHHHHHHHHhhcC
Q 003146 489 QYHLLHALNSIAAH 502 (844)
Q Consensus 489 ~~~a~~~L~~L~~~ 502 (844)
+..|+.+|..+...
T Consensus 251 ~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 251 RAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777776666544
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.12 E-value=3.9 Score=49.85 Aligned_cols=210 Identities=10% Similarity=0.077 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCC---ChHHHHHHHHHHHHhcc--CCc----cHHHHHHcC
Q 003146 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGN---DPVASHDAGKLLNALSS--NTQ----NALHMAEAG 349 (844)
Q Consensus 279 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~---d~~~~~~A~~~L~nLs~--~~~----~~~~i~~~g 349 (844)
+.+.|++|-..|.++-++ .++......+|..+ ++.++.-|+.+|.+.-. .++ .+..+ ...
T Consensus 21 d~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHH
Confidence 466788888888776544 44555666667543 68888888888876543 233 23322 222
Q ss_pred ChHHHHHHhc--cCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCH-HHHHHHHHHHHHhhcC----c-
Q 003146 350 YFKPLVQYLK--EGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKL-EAKLSALNALQNLSLL----A- 421 (844)
Q Consensus 350 ~i~~Lv~~L~--~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~----~- 421 (844)
.+..+.. .. .++..++...+.++..+...+-.. .=.+.++.|+.++..+++ ......++.|..++.. .
T Consensus 90 ll~~l~~-~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKE-LSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHH-CCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 3333333 11 234567777888887776542110 014678888888876544 3444455555544321 0
Q ss_pred -c-----c-----HHHHHHc---CChHHHHHHhhccC-CcchhhHHHHHHHHHHHhcC-h-hhhcccchHHHHHHhhccC
Q 003146 422 -E-----N-----IQRLVIS---GIVSPLLQLLFSVT-SVLMTLREPASAILARIAQS-E-SILVNKDVAQQMLSLLNLC 484 (844)
Q Consensus 422 -~-----~-----~~~i~~~---g~v~~Lv~lL~~~~-~~~~~l~~~a~~~L~~l~~~-~-~~l~~~~~i~~Lv~lL~~~ 484 (844)
. . +..+.+. -+++....+|.... .....++..++.+|.....- + ..+.+.+.++.+..++.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~-- 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQ-- 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTT--
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcC--
Confidence 0 1 1122211 01334444443310 01234667788777776653 2 44556678888888885
Q ss_pred ChHHHHHHHHHHHHhhcCCCh
Q 003146 485 SPTIQYHLLHALNSIAAHSSA 505 (844)
Q Consensus 485 ~~~~~~~a~~~L~~L~~~~~~ 505 (844)
++..+..|+.+|..+......
T Consensus 244 ~~~~r~~A~ecL~ei~~k~~~ 264 (980)
T 3ibv_A 244 IEELRCAACETMTEIVNKKMK 264 (980)
T ss_dssp SHHHHHHHHHHHHHHHHSCCC
T ss_pred ChHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999877643
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.06 E-value=0.0026 Score=64.09 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccccchhHHhhhhcCCCCchHHHHHHH
Q 003146 770 QAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLL 831 (844)
Q Consensus 770 ~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a~~~Lv~ll~~~~~~~~~~aa~~L 831 (844)
+.|..++++++..+|..++..+. ...|..| ++.++.||..|+..|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 44556667777777777766542 1233344 777777777776544
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.87 E-value=0.086 Score=57.81 Aligned_cols=259 Identities=14% Similarity=0.172 Sum_probs=149.4
Q ss_pred HHHhhCCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcCCHHHHHHHHHHHHHccCCCh
Q 003146 219 EWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPA 298 (844)
Q Consensus 219 ~~i~~~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~A~~~L~~Ls~~~~ 298 (844)
.|.-+ .|..+..-|-++..++|--|+.+|+.+............ .+ +. ..|++.+.-++-+.
T Consensus 170 eWPfq--fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~----------~~--N~---DLAvRLLCVLALDR- 231 (800)
T 3oc3_A 170 ENVLD--FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQI----------RV--DS---KLFSKIYEILVTDK- 231 (800)
T ss_dssp CSGGG--TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCC----------CC--CT---THHHHHHHHHHHBC-
T ss_pred CCHHH--HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceec----------cc--cH---HHHHHHHHHHHhcc-
Confidence 57776 788999999999999999999999999865432110000 00 11 22333333222110
Q ss_pred hHHHHhhhhCcHHHHHHhhcC-CChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 299 VWRRIGRIQGCIVMLVSMLSG-NDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRME 377 (844)
Q Consensus 299 ~~~~i~~~~g~i~~Lv~lL~s-~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls 377 (844)
+++ ..++ --.-+++.|+.+|..+ .+-+.. ...+..++..+..+..+++..+.-.|..+
T Consensus 232 ----FGD----------YVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL- 290 (800)
T 3oc3_A 232 ----FND----------FVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL- 290 (800)
T ss_dssp ----CBB----------CSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-
T ss_pred ----ccc----------cccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-
Confidence 000 0001 1134566666666666 422111 23334444444556677776666666666
Q ss_pred cCchhhhhhh-hcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHH
Q 003146 378 LTDQSRASLG-EDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASA 456 (844)
Q Consensus 378 ~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~ 456 (844)
+..+. =.++++.++..|.+.+.+++..|+.+|..++ .++....++ ..+-+.|.+.++. ..-......
T Consensus 291 -----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~~LL-----~iLWd~L~~LDDL-SASTgSVMd 358 (800)
T 3oc3_A 291 -----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLDLVL-----EKCWKNIESEELI-SVSKTSNLS 358 (800)
T ss_dssp -----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHHHHH-----HHHHHHHHTCCSC-CTTHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHHHHH-----HHHHHHhhhhccc-chhhHHHHH
Confidence 11111 1466777778888888888888888888877 333333322 2344444443322 122345666
Q ss_pred HHHHHhcChhh-hcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHH-HHhccCCHHHHH
Q 003146 457 ILARIAQSESI-LVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLL-PFLMETNANIRA 534 (844)
Q Consensus 457 ~L~~l~~~~~~-l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv-~ll~~~~~~v~~ 534 (844)
.|+.|+..+.. ......+|.|...++.+-+.+|..++++|..+.. .. .++.+. .+|-..+++++.
T Consensus 359 LLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~----~~---------~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 359 LLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE----ES---------IDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp HHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC----HH---------HHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh----hh---------HHHHHHHHHHhCCcHHHHH
Confidence 77777666521 2234678889999999999999999999988761 11 233333 356677888888
Q ss_pred HHHHHHH
Q 003146 535 AALNLVC 541 (844)
Q Consensus 535 ~A~~~L~ 541 (844)
.+..+-.
T Consensus 426 lS~~VWk 432 (800)
T 3oc3_A 426 MAIKLLK 432 (800)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777664
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.086 Score=54.29 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=118.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcCc---hhhhhhh-h-cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcc----cH
Q 003146 354 LVQYLKEGSDMSKILMATALSRMELTD---QSRASLG-E-DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAE----NI 424 (844)
Q Consensus 354 Lv~~L~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----~~ 424 (844)
|-+.|.+.++..|..+...|..+.... ....... . ....+.+-..+.+.+..+...++.+|..++..-. ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567888999999998888877654321 1111111 1 2345566678889999999999999998875321 11
Q ss_pred H--HHHHcCChHHHHHH-hhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 425 Q--RLVISGIVSPLLQL-LFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 425 ~--~i~~~g~v~~Lv~l-L~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
. ...-..++|.|+.- +.+.. ..+++.+..++..++.... .....++.+...+...+|.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k---~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR---ATTKTQSMSCILSLCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 12234456777754 44333 3466777777766653321 112345667777888999999999988887654
Q ss_pred CCChhH--HHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhH
Q 003146 502 HSSASN--VRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYE 549 (844)
Q Consensus 502 ~~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~ 549 (844)
..+... ....+ ..+++.+..++.+.++.||..|..++..+-++.++
T Consensus 169 ~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 169 AFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 321111 11111 12456788889999999999999999887666553
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.43 E-value=0.013 Score=58.82 Aligned_cols=42 Identities=10% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHH
Q 003146 477 MLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALN 538 (844)
Q Consensus 477 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~ 538 (844)
+..+++++++.+|..++..| ..+.|..++.+++..||..++.
T Consensus 79 l~~L~~D~~~~VR~~aA~~L--------------------~~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL--------------------PREQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS--------------------CSGGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC--------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 44555666666666666431 1245666777777777777666
No 102
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.17 E-value=1.4 Score=43.68 Aligned_cols=228 Identities=16% Similarity=0.129 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHHHh-------hcCCC--hHH---HHHHHHHHHHhccCCccHHHHH
Q 003146 280 VEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLVSM-------LSGND--PVA---SHDAGKLLNALSSNTQNALHMA 346 (844)
Q Consensus 280 ~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~l-------L~s~d--~~~---~~~A~~~L~nLs~~~~~~~~i~ 346 (844)
++.|+.|+..|..--.. ++....+....|.|..|++= ++.+. +.. .-+|...|..++.+++.|..+.
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl 94 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFL 94 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHH
Confidence 34567776666543222 44555555557888777542 22222 111 2366677777889999999999
Q ss_pred HcCChHHHHHHhccCC-----HHHHHHHHHHHHHhhcCc--hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 003146 347 EAGYFKPLVQYLKEGS-----DMSKILMATALSRMELTD--QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 347 ~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
++...--|-.+|+..+ +..|..+.++++.|...+ +.-..+.+.+.||..++.++.|+.-.|..|.-.+..+-.
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9887666667776553 345778889999988654 444555678999999999999999999999888877765
Q ss_pred CcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHh
Q 003146 420 LAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSI 499 (844)
Q Consensus 420 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 499 (844)
++..-..+.. .. + --.....+|.++. ..+.+.+++....+.+++-..|
T Consensus 175 dd~GL~YiC~------------t~----e-RF~av~~vL~~mV---------------~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 175 DDTGLAYICQ------------TY----E-RFSHVAMILGKMV---------------LQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp SHHHHHHHTS------------SH----H-HHHHHHHHHHHHH---------------HHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHc------------cH----H-HHHHHHHHHHHHH---------------HHHhcCCChHHHHHHHHHHHHH
Confidence 4432221110 00 0 1123333444332 1344567888889999999999
Q ss_pred hcCCChhHHHHHHHhCCcH----HHHHHHhccCCHHHHHHHHHHHHHh
Q 003146 500 AAHSSASNVRRKMKENGAI----HLLLPFLMETNANIRAAALNLVCTL 543 (844)
Q Consensus 500 ~~~~~~~~~~~~i~~~g~i----~~Lv~ll~~~~~~v~~~A~~~L~~l 543 (844)
+.+ +..+..+...=-. ..+..++ .+++.++++-..++.|+
T Consensus 223 sdn---~rar~aL~~~LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 223 SDN---PRAREALRQCLPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp TTS---HHHHHHHHHHSCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred hcC---HHHHHHHHHhCcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 887 5667666631100 0111122 24566666666666554
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.46 Score=48.72 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=118.2
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhH--H-HHhcCCc-HHHHHHHhcC-CHHHHHHHHHHHHHccCCC---h
Q 003146 227 IAVLLNRLGSSKPYNRLIMIQILRNLASENADYK--E-KMANVGS-LSALVKSLTR-DVEEQREAVGLLLDLSDLP---A 298 (844)
Q Consensus 227 ~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~--~-~i~~~g~-i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~---~ 298 (844)
+| +-+.|.|.+...|..++..|..+........ . .+...+. .+.+-+.+.+ +...+..++.++..+...- .
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 56 6788999999999999999988876543221 1 1122232 3444556655 5567778888887775431 1
Q ss_pred -hHHHHh-hhhCcHHHHHH-hhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 003146 299 -VWRRIG-RIQGCIVMLVS-MLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSR 375 (844)
Q Consensus 299 -~~~~i~-~~~g~i~~Lv~-lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~ 375 (844)
.+.... .....+|.|+. .|.+..+.++..|..++..+......... .++.++..+.+.++.++..+...|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111111 11456888886 47888888998888888776543322222 23456667788889888888877776
Q ss_pred hhcCc-----hhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 003146 376 MELTD-----QSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 376 Ls~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 420 (844)
+...- ..+..+ ...++.+..+|.+.++.+|..|..++..+-..
T Consensus 166 ~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 54321 111111 13456788889999999999999988877643
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.80 E-value=0.67 Score=46.81 Aligned_cols=185 Identities=17% Similarity=0.155 Sum_probs=111.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHh----hcCCHHHHHHHHHHHHHhhcC---cc--c
Q 003146 353 PLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMF----RVGKLEAKLSALNALQNLSLL---AE--N 423 (844)
Q Consensus 353 ~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~A~~aL~nLs~~---~~--~ 423 (844)
.+...|-+.+...+..+...|...... +...+. ..+..+.+.+ -+.++.+...++..|..+... .+ .
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344444455555555565555543211 111111 1222233322 266777777777776665311 11 0
Q ss_pred HHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 424 IQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 424 ~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
... -..-.+|.|++-+.+.. ..+++.+..++..+.. +.......+.+++-+.+.++..|+.++..+..+-...
T Consensus 126 ~~~-ea~~~lP~LveKlGd~k---~~vR~~~r~il~~l~~---v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 126 SQE-EVSAFVPYLLLKTGEAK---DNMRTSVRDIVNVLSD---VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CHH-HHHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHH---HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 010 01235788888875544 4578888888777653 1122235677778888889999999999998886543
Q ss_pred ChhHHHHHHHhCCcH---HHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 003146 504 SASNVRRKMKENGAI---HLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQL 555 (844)
Q Consensus 504 ~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l 555 (844)
|.. ...++ +.+..++.+.+..||..|..++..+-.+.++.+...+
T Consensus 199 G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 199 GIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp CSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 322 23478 9999999999999999999999776655555544433
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.66 E-value=0.17 Score=51.24 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=81.9
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHh
Q 003146 652 VIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV 731 (844)
Q Consensus 652 ~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~l 731 (844)
.+|.|+.=+.++.+.+|..+-.++..+..-.+ -....+.++.-
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------------------------------------~~~v~~~l~~g 175 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------------------------------------PLKMTPMLLDA 175 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------------------------------------HHHHHHHHHHG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------------------------------------HHHHHHHHHHH
Confidence 57999999999999999988888877663111 11245778888
Q ss_pred hcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCCh---HHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 003146 732 LEGKEREADETVLGALASLLQDETWESGSNYLAKLSGT---QAIIKVLESGNAKAQEKALWILERIFRI 797 (844)
Q Consensus 732 L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i---~~lv~ll~~~~~~~~~~A~~~L~~i~~~ 797 (844)
+.+.+..+|+.++..+..+.... |.. ...++ +.+.+++.++|..+|..|+.++..+++.
T Consensus 176 ~ksKN~R~R~e~l~~l~~li~~~----G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 176 LKSKNARQRSECLLVIEYYITNA----GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH----CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHHhc----CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998764 332 24478 8899999999999999999999988765
No 106
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.80 E-value=1.2 Score=45.94 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHhccCCccHHHHHHc--CChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhh-hcCchHHHH
Q 003146 320 NDPVASHDAGKLLNALSSNTQNALHMAEA--GYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLG-EDGAIEPLV 396 (844)
Q Consensus 320 ~d~~~~~~A~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv 396 (844)
..+..+-.++.++.|+-.++..+..+... ..++.+...+.+.+..++..++..+.|++.......... ....+..+.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 35666888999999999888888777642 233333444445577888899999999987421111111 011333444
Q ss_pred HHhh-cCCHHHHHHHHHHHHHhhcCcccHHHHHHc
Q 003146 397 RMFR-VGKLEAKLSALNALQNLSLLAENIQRLVIS 430 (844)
Q Consensus 397 ~lL~-~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~ 430 (844)
.+++ ..+.+....++.||++|...+.....+.+.
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~ 274 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKS 274 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence 4444 346788888999999999766555555543
No 107
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.83 E-value=1.5 Score=43.30 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=104.9
Q ss_pred HHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCCc--cHHHHHHcCChHHHHH
Q 003146 284 REAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGND-----PVASHDAGKLLNALSSNTQ--NALHMAEAGYFKPLVQ 356 (844)
Q Consensus 284 ~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d-----~~~~~~A~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ 356 (844)
..|+..|.-++.+++.+..+.+ ++..-.|..+|+..+ ...+-.+.++++.|...++ ...-+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 4677788888999999999998 888777778886433 3456677888888886433 3444557889999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhcCchhhhhhhh--------cCchHHHHH-HhhcCCHHHHHHHHHHHHHhhcCcccHHHH
Q 003146 357 YLKEGSDMSKILMATALSRMELTDQSRASLGE--------DGAIEPLVR-MFRVGKLEAKLSALNALQNLSLLAENIQRL 427 (844)
Q Consensus 357 ~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i 427 (844)
.+..|++-.|..|+-++..+-.++.+-..+.. ...+..+|. +.++++++.-+..+++-..|+.++..+..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999998887766555443 112222222 334667788888888888888777665555
Q ss_pred H
Q 003146 428 V 428 (844)
Q Consensus 428 ~ 428 (844)
-
T Consensus 233 ~ 233 (268)
T 2fv2_A 233 R 233 (268)
T ss_dssp H
T ss_pred H
Confidence 4
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.28 E-value=1.3 Score=47.95 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=86.7
Q ss_pred ccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHH
Q 003146 359 KEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLL 437 (844)
Q Consensus 359 ~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv 437 (844)
..|+...+..|+..+...-.. ++.. ..+|..++++..+.+..+|..|++.|..+|.+ ++..+++ ..|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----DvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HHHH
Confidence 456788888899988876543 3332 35789999999999999999999999999988 7766665 4689
Q ss_pred HHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHH
Q 003146 438 QLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS 498 (844)
Q Consensus 438 ~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 498 (844)
++|+..+.........++..|..+ ...+.+..+...+..+++.+|+.++.-|..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~-------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKM-------DAKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999877643222333343333322 223566777777777888899988877754
No 109
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.89 E-value=13 Score=38.17 Aligned_cols=188 Identities=10% Similarity=0.095 Sum_probs=100.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHH----HHhcc-CCHHHHHHHHHHHHHhhcCchhhh
Q 003146 310 IVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLV----QYLKE-GSDMSKILMATALSRMELTDQSRA 384 (844)
Q Consensus 310 i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv----~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (844)
+..|..++ +-.++.+--+...++-+..++.....+.+.+.-..++ ..+.+ +.+..+..+.+++.|+-.+..++.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 44555555 2222333444455554444443333333322222333 33322 345567889999999988887777
Q ss_pred hhhh--cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHh
Q 003146 385 SLGE--DGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIA 462 (844)
Q Consensus 385 ~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~ 462 (844)
.+.. ...++.+...+.+.+..++..++..++|++..- .+. .+ ..-...++.++.
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~------~~~------------~~---~~~~~~ll~~l~--- 239 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCF------HKD------------HN---IEGKAQCLSLIS--- 239 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH------HHS------------CC---HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH------hhc------------CC---chHHHHHHHHHH---
Confidence 6654 344555555555667888999999999998421 010 00 001112222221
Q ss_pred cChhhhcccchHHHHHHhhc-cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHHHHH
Q 003146 463 QSESILVNKDVAQQMLSLLN-LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNANIRAAALNLV 540 (844)
Q Consensus 463 ~~~~~l~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L 540 (844)
.+++ ..+++....++-+|.+|.... .+..+....-|+...+-.+... ..++|.+.|..++
T Consensus 240 ----------------~il~~~~d~EalyR~LvALGtL~~~~--~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 240 ----------------TILEVVQDLEATFRLLVALGTLISDD--SNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp ----------------HHHTTCCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred ----------------HHHhccCCHHHHHHHHHHHHHHHhCC--hhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 1121 246677778888888887653 5566666555555555555544 3345655554443
No 110
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.72 E-value=44 Score=40.75 Aligned_cols=216 Identities=17% Similarity=0.118 Sum_probs=120.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHhC-CCCchHHHHHHHHHHHhHhc-Chhh---
Q 003146 185 IDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLG-SSKPYNRLIMIQILRNLASE-NADY--- 259 (844)
Q Consensus 185 i~~lv~~L~~~~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL~-s~~~~~~~~a~~~L~~L~~~-~~~~--- 259 (844)
++.++..+-++++.....|-+.+..+-+.|.. ++....+|. +.++.+|.-++..|++.+.. |..-
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~a----------w~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNPDA----------WQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTG----------GGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCccH----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 55666666666655455555667777766643 444455553 55789999999999998764 4321
Q ss_pred -HHHHhcCCcHHHHHHHhcCC------HHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHH
Q 003146 260 -KEKMANVGSLSALVKSLTRD------VEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLL 332 (844)
Q Consensus 260 -~~~i~~~g~i~~Lv~~L~~~------~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L 332 (844)
+..+ ....+..+.+.-..+ .-.+.+.+.++..+++..-. ....+.++-|+.++++ ++...+....+|
T Consensus 88 ~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 88 HRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp HHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 2222 111222222221111 12344455556555443200 0136778889998864 345566777777
Q ss_pred HHhccC------C---cc-----HHHHHHc--CChHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHH
Q 003146 333 NALSSN------T---QN-----ALHMAEA--GYFKPLVQYLKE-GSDMSKILMATALSRMELTDQSRASLGEDGAIEPL 395 (844)
Q Consensus 333 ~nLs~~------~---~~-----~~~i~~~--g~i~~Lv~~L~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~L 395 (844)
..|+.. + .. +..|.+. ..++.+...|.. .+......+..++.....- -.-..+...+.++.+
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W-I~i~~i~~~~ll~~l 240 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW-IPYRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT-SCTHHHHSSSHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh-CCHHHhcchhHHHHH
Confidence 776521 1 11 1222221 123333344433 3445555666777664431 112334567888888
Q ss_pred H-HHhhcCCHHHHHHHHHHHHHhhc
Q 003146 396 V-RMFRVGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 396 v-~lL~~~~~~~~~~A~~aL~nLs~ 419 (844)
. .+|. ++..+..|+.+|..+..
T Consensus 241 ~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CHHHHHHHHHHHHHHHc
Confidence 8 8875 57889999999999886
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.68 E-value=10 Score=39.10 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=136.9
Q ss_pred hcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC-----hhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 003146 264 ANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP-----AVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSS 337 (844)
Q Consensus 264 ~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~-----~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~ 337 (844)
...+.+..|+..|.. +-+.|+.++....++-+.. .....+......+..|+.- .+++++.-++-..|+....
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Ye~~diAl~~G~mLRecir 152 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--YESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--GGSTTTHHHHHHHHHHHHT
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh--hccchhHhHHHHHHHHHHH
Confidence 445678888888887 7888988888777775542 1223333323333333332 3566777777778888778
Q ss_pred CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhh---cCchHHHHHHhhcCCHHHHHHHHHH
Q 003146 338 NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGE---DGAIEPLVRMFRVGKLEAKLSALNA 413 (844)
Q Consensus 338 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~a 413 (844)
++.....|...+.+..+.++...++=++...|..++..|-.. ......... .......-.+|.+++.-.|+.+++.
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 888788888888999999999988878777788887765332 222112221 2345567789999999999999999
Q ss_pred HHHhhcCcccHHHHHH----cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146 414 LQNLSLLAENIQRLVI----SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE 465 (844)
Q Consensus 414 L~nLs~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~ 465 (844)
|+.|-.++.|...|.. ..-+..++.+|++.. ..++-+|-.++...+.++
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s---k~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS---RNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch---hchhhhhhhheeeeeeCC
Confidence 9999999998877764 334556777777665 347788888877666554
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.60 E-value=21 Score=36.88 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=142.0
Q ss_pred HHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc-cHHH---HHHcCChHHHHHHhccC--CHHHHHHHHHHHHH
Q 003146 302 RIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ-NALH---MAEAGYFKPLVQYLKEG--SDMSKILMATALSR 375 (844)
Q Consensus 302 ~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~-~~~~---i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~ 375 (844)
.+.. .+.+..|+..|..=+-+.+..++.+..++-.... ++.. -... - +.++..|-.| +++....+...|..
T Consensus 73 ei~~-~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~-peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYN-SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-Q-QNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHH-HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-C-THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHH-hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-C-HHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4555 8999999999998899999999998888865322 2111 1121 1 3444444444 34455567777877
Q ss_pred hhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-cccHHHHHHc---CChHHHHHHhhccCCcchhhH
Q 003146 376 MELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQRLVIS---GIVSPLLQLLFSVTSVLMTLR 451 (844)
Q Consensus 376 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~~~~~i~~~---g~v~~Lv~lL~~~~~~~~~l~ 451 (844)
....+.....+...+.+..+.+....++-++-.+|..++..|-.. .......+.. ..+...-.+|.+++ -..+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N---YVTk 226 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN---YVTK 226 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS---HHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc---chhH
Confidence 777777777777778888999999999999999999998887654 4444444432 24556667777766 3468
Q ss_pred HHHHHHHHHHhcCh-------hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 452 EPASAILARIAQSE-------SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 452 ~~a~~~L~~l~~~~-------~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
..++..|..+-.+. .++.+..-+..++.+|++.+..+|..|..++--...++
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99999999998774 35667777899999999999999999998887666554
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=89.29 E-value=7.4 Score=38.09 Aligned_cols=142 Identities=13% Similarity=0.041 Sum_probs=96.0
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHH-hhccCChHHHHHHHHHHHHhhc-CCChhHHHHHH
Q 003146 435 PLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLS-LLNLCSPTIQYHLLHALNSIAA-HSSASNVRRKM 512 (844)
Q Consensus 435 ~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~i 512 (844)
++...|..++. ..+|-.|+.+|..+ . .....++.+.. +-...+..+|+.+..++..+|. ... +
T Consensus 74 ~la~~L~~~~~--deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-e------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDV--YQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-K------ 138 (240)
T ss_dssp HHHHHHHTCSS--HHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-T------
T ss_pred HHHHHHHhCcc--hHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-H------
Confidence 34545555443 35677787777766 2 12345666666 4556788999999999999985 221 1
Q ss_pred HhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHH
Q 003146 513 KENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKK 592 (844)
Q Consensus 513 ~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~ 592 (844)
..++.+...+.+++..+|+.|...++.-+.. +. ....+..+-+++.-+..+++.-++.+.+..|..+++.+|+
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~---~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY---FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT---TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch---hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 2578889999999999999998877542211 10 0112224445666666678889999999999999999998
Q ss_pred HHHHHH
Q 003146 593 ATELLK 598 (844)
Q Consensus 593 ~~~~l~ 598 (844)
....++
T Consensus 212 ~V~~~~ 217 (240)
T 3l9t_A 212 LVKIEL 217 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=88.12 E-value=0.57 Score=51.54 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc
Q 003146 364 MSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV 443 (844)
Q Consensus 364 ~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~ 443 (844)
.+|+.+|.+|+.+ ..-... ..++..|+..+....-+++..++-.|..+...-.. -.++++.++..|.+.
T Consensus 243 PVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----KDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----HHHHHHHHHHHTTCS
T ss_pred ehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----HHHHHHHHHhhcCCc
Confidence 5799999999998 431111 34556666666777789999999999988211111 134567777777766
Q ss_pred CCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCC--hHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHH
Q 003146 444 TSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCS--PTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLL 521 (844)
Q Consensus 444 ~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~L 521 (844)
+ ..++..|+.+|.-++.... -...+..+.+.|..-+ ..........|..||+++.. .-..+..+|.|
T Consensus 312 D---DDVRAVAAetLiPIA~p~~---l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-----a~~dp~LVPRL 380 (800)
T 3oc3_A 312 D---EDIKLLSAELLCHFPITDS---LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-----LSIPPERLKDI 380 (800)
T ss_dssp S---HHHHHHHHHHHTTSCCSST---HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-----CCCCSGGGGGT
T ss_pred c---cHHHHHHHHHhhhhcchhh---HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-----cccChHHHHHH
Confidence 5 3588899999887772111 0122333334443321 12334566777888877521 11134689999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHH-HHhcCCCCHHHHHHHHHHH
Q 003146 522 LPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILV-DITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 522 v~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv-~lL~~~~~~~~~~~a~~~L 583 (844)
+.++++.-+.||.++.++|..+. ... .++.+. .+|- ..+++++..+..+.
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL---~~~--------~LRLIFQNILL-E~neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLS---EES--------IDFLVAEVVLI-EEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCC---CHH--------HHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHHHHHHHHHHHH---hhh--------HHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 99999999999999999997775 111 222222 1222 46777777666666
No 115
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=88.04 E-value=5.1 Score=41.13 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=97.2
Q ss_pred HHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHH
Q 003146 497 NSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEK 576 (844)
Q Consensus 497 ~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~ 576 (844)
.+|--+. ...-.-+....|+..+......++.++.+++.++|-..+.... -..-.+ ...++-+++.+.-++++++.
T Consensus 267 L~LLmHd--SnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 267 LGLLLHD--SDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHCCS--HHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHhcc--cccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-cccchHHHHHhccCCCcceE
Confidence 3444443 5566667788899999999999999999999999977764321 100001 22677777888778999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCC-------CCCchhHHHHHHHHHHhcc
Q 003146 577 AAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITK-------THSTPWLVESVAGILIRFT 636 (844)
Q Consensus 577 ~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~-------~~~~~~l~e~a~~aL~~l~ 636 (844)
....|.|+|...+...+.+.-+..|+++.|...+.....-. +....++.-+++.++.||-
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL 409 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL 409 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence 99999999999888888888899999999998886433211 1112344456666776654
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.79 E-value=2.6 Score=41.33 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=84.2
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHH-
Q 003146 652 VIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQ- 730 (844)
Q Consensus 652 ~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~- 730 (844)
.++....|.+++...+|..|+..|+.+ ... ..+++.+..
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------------------------------------~~~L~~ir~~ 111 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------------------------------------KEILIFMRDE 111 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------------------------------------HHHHHHHHHT
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------------------------------------HHHHHHHHHH
Confidence 445666777888889999999988887 211 113445554
Q ss_pred hhcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhcccc--
Q 003146 731 VLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESA-- 808 (844)
Q Consensus 731 lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~a-- 808 (844)
+-.+++-.|++.+..++..+.....++ ..++.+.....++++.+|+-|...+-- +... .......
T Consensus 112 va~D~~WrVre~lA~a~~~~~~~~~pe---------~~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~---~~~k~dp~~ 178 (240)
T 3l9t_A 112 VSKDNNWRVQEVLAKAFDEFCKKIEYK---------KALPIIDEWLKSSNLHTRRAATEGLRI-WTNR---PYFKENPNE 178 (240)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHCTT---------TTHHHHHHHHHCSSHHHHHHHHHHTCS-GGGS---TTTTTCHHH
T ss_pred hCCCCCccHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHhcCCCHHHHHHHHHhhHH-Hhcc---chhhcCHHH
Confidence 445788899999999998887521111 145667778889999999888765432 1110 0111111
Q ss_pred c-hhHHhhhhcCCCCchHHHHHHHHHHhh
Q 003146 809 Q-VVLIDLAQNGDSRLKPAVAKLLAQLEL 836 (844)
Q Consensus 809 ~-~~Lv~ll~~~~~~~~~~aa~~L~~l~~ 836 (844)
. ..|-.+..+.+.-||+..+..|...+.
T Consensus 179 ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 179 AIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 1 233346667778899999988887754
No 117
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.09 E-value=23 Score=37.73 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=95.4
Q ss_pred HHHHHcCChHHHHHHhhccC--------CcchhhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHH
Q 003146 425 QRLVISGIVSPLLQLLFSVT--------SVLMTLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHL 492 (844)
Q Consensus 425 ~~i~~~g~v~~Lv~lL~~~~--------~~~~~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a 492 (844)
..++ .+++..|+.+|..-. .........+..+|..+.... .++.+...+..|+..+.+..+.++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 4444 456677777775311 111245567888888888775 467778899999999999999999999
Q ss_pred HHHHHHhhcCCC----hhHHHHH------HHhCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhhhhh-HH----HHHHhc
Q 003146 493 LHALNSIAAHSS----ASNVRRK------MKENGAIHLLLPFLME-TNANIRAAALNLVCTLSKDVY-EE----LAEQLG 556 (844)
Q Consensus 493 ~~~L~~L~~~~~----~~~~~~~------i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls~~~~-~~----i~~~l~ 556 (844)
+.+|..+|..++ ...+-.. ..+..-...++..+.+ .+.+.+..+..++..+....+ -. +...+.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999997753 2222222 2344567788888887 466788888887776654433 11 222222
Q ss_pred hhhHHHHHHHhcCCCCH
Q 003146 557 DKYLNILVDITLSSTSE 573 (844)
Q Consensus 557 ~~~l~~Lv~lL~~~~~~ 573 (844)
.-++..++.-++..+++
T Consensus 263 ~~Gl~~il~~lr~~~~~ 279 (383)
T 3eg5_B 263 RLGLHQVLQELREIENE 279 (383)
T ss_dssp HTTHHHHHHHHTTSCCH
T ss_pred HCChHHHHHHHhcCCCh
Confidence 33666666666654443
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.01 E-value=16 Score=39.74 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=84.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCC
Q 003146 272 LVKSLTRDVEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGY 350 (844)
Q Consensus 272 Lv~~L~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~ 350 (844)
++..-+.+..+++.|+..|...-++ |+.. ..+|..++.|..++|..+|..|+..|-.+|.+ ++...+
T Consensus 34 Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki----- 101 (507)
T 3u0r_A 34 ILDGVKGGTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV----- 101 (507)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----
Confidence 3443344567888888888887664 5544 44677899999999999999999999999988 665555
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHH
Q 003146 351 FKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQ 415 (844)
Q Consensus 351 i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 415 (844)
...|+++|..++.......-.+|..|-..+ ..+.+..|..-+..++..+|+.++.-|.
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 457899999887655444444444433221 1244455555555567778887776664
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.65 E-value=39 Score=41.40 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=114.1
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhcc-CCccHHHHHHcCChHHHHHHhcc----CCHHHHHHHHHHHHHhhcCchh
Q 003146 308 GCIVMLVSMLSGNDPVASHDAGKLLNALSS-NTQNALHMAEAGYFKPLVQYLKE----GSDMSKILMATALSRMELTDQS 382 (844)
Q Consensus 308 g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~~L~~----~~~~~~~~aa~~L~~Ls~~~~~ 382 (844)
.++..+..++.+++....+ |+.+|..+.. -..+.. .+..+..++.+ .++.++..+.-+++.|...-..
T Consensus 356 ~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 356 EALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666665544333 3333332221 112222 33444555544 2445555555556655431100
Q ss_pred hhhhhhcCchHHHHHHh----hcCCHHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhcc----CCcchhhHHHH
Q 003146 383 RASLGEDGAIEPLVRMF----RVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSV----TSVLMTLREPA 454 (844)
Q Consensus 383 ~~~i~~~g~i~~Lv~lL----~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~----~~~~~~l~~~a 454 (844)
.........++.+...| ..++...+..++++|+|+... ..++.|..++... .+.+..++..|
T Consensus 429 ~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aA 498 (1056)
T 1lsh_A 429 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEA 498 (1056)
T ss_dssp TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHH
Confidence 00011123355555544 566777788999999999742 3467777777532 22234577789
Q ss_pred HHHHHHHhcChhhhcccchHHHHHHhhc--cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHH
Q 003146 455 SAILARIAQSESILVNKDVAQQMLSLLN--LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNAN 531 (844)
Q Consensus 455 ~~~L~~l~~~~~~l~~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~ 531 (844)
.++|.+++.... ..+-+.+..+.. ..++++|..|+.+|..-+ ++.. .+..+...+.. .+.+
T Consensus 499 i~ALr~~~~~~p----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~--P~~~----------~l~~ia~~l~~E~~~Q 562 (1056)
T 1lsh_A 499 IMALRNIAKRDP----RKVQEIVLPIFLNVAIKSELRIRSCIVFFESK--PSVA----------LVSMVAVRLRREPNLQ 562 (1056)
T ss_dssp HHTTTTGGGTCH----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC--CCHH----------HHHHHHHHHTTCSCHH
T ss_pred HHHHHHhhhhch----HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC--cCHH----------HHHHHHHHHhhCchHH
Confidence 999988875421 123456677774 467889999988886532 2111 34455555554 4567
Q ss_pred HHHHHHHHHHHhhhhh
Q 003146 532 IRAAALNLVCTLSKDV 547 (844)
Q Consensus 532 v~~~A~~~L~~ls~~~ 547 (844)
|.......|.++++..
T Consensus 563 V~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 563 VASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777777777776543
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=82.21 E-value=24 Score=34.64 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC----hhHHHHH------HHh
Q 003146 449 TLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS----ASNVRRK------MKE 514 (844)
Q Consensus 449 ~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~~~~------i~~ 514 (844)
.....+..+|..+.... .++.+.+.+..++..+.+.++.++..++..|..+|..++ ...+-.. ..+
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e 148 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 148 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence 34567888888888775 466777889999999999999999999999999997753 2222222 223
Q ss_pred CCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhhhhh-HH----HHHHhchhhHHHHHHHhcCCCCH
Q 003146 515 NGAIHLLLPFLME-TNANIRAAALNLVCTLSKDVY-EE----LAEQLGDKYLNILVDITLSSTSE 573 (844)
Q Consensus 515 ~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls~~~~-~~----i~~~l~~~~l~~Lv~lL~~~~~~ 573 (844)
..-...++..+.. .+.+.+..+..++..+....+ -. +...+..-++..++..++...++
T Consensus 149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~ 213 (233)
T 2f31_A 149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENE 213 (233)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCH
T ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCH
Confidence 4456677777774 445777777777766654433 11 12222233666666655544443
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=79.36 E-value=49 Score=32.32 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=78.5
Q ss_pred cCCcHHHHHHHhcC----C--------HHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHH
Q 003146 265 NVGSLSALVKSLTR----D--------VEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLL 332 (844)
Q Consensus 265 ~~g~i~~Lv~~L~~----~--------~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L 332 (844)
..+|+..|+..|.. . .+.+..++.+|+.+.........+....+++..|+..|.++++.++..+...|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35677777777753 1 13456788999998888766666766688999999999999999999999999
Q ss_pred HHhccCCc--c-HHHHH----------HcCChHHHHHHhccC-CHHHHHHHHHHHHHhhc
Q 003146 333 NALSSNTQ--N-ALHMA----------EAGYFKPLVQYLKEG-SDMSKILMATALSRMEL 378 (844)
Q Consensus 333 ~nLs~~~~--~-~~~i~----------~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~ 378 (844)
..+|..+. + ...+. +..-+.++++.|+++ +.+.+..+...+-.+..
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC
Confidence 88886543 4 33332 334678888888754 34455444444433433
No 122
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=77.15 E-value=1.4e+02 Score=36.39 Aligned_cols=211 Identities=12% Similarity=0.134 Sum_probs=111.9
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHHhcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCC-----Ch-h
Q 003146 228 AVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDL-----PA-V 299 (844)
Q Consensus 228 p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~-----~~-~ 299 (844)
..++..+.+++.+.+..|...|..+ ...++ +......+|.. +...|--|+..|.+..+. +. .
T Consensus 31 e~lv~~ly~p~~~~r~qA~~~L~q~-q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 31 DNVVNCLYHGEGAQQRMAQEVLTHL-KEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHTTTCSSHHHHHHHHHHHHTS-SCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-HcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 3344444555666677777777665 23322 33333334433 456777777777765432 22 2
Q ss_pred HHHHhhhhCcHHHHHHhhcC-----CChHHHHHHHHHHHHhcc--CCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHH
Q 003146 300 WRRIGRIQGCIVMLVSMLSG-----NDPVASHDAGKLLNALSS--NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATA 372 (844)
Q Consensus 300 ~~~i~~~~g~i~~Lv~lL~s-----~d~~~~~~A~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~ 372 (844)
+..+- ...+..+.....+ .++..+...+.++..+.. .++.. .+.++.++..++.+ +........+
T Consensus 101 ~~~LR--~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~-~~~~~~~L~I 172 (1073)
T 3gjx_A 101 CEGIK--KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTS-ESLCQNNMVI 172 (1073)
T ss_dssp HHHHH--HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 22222 2334444443322 245555555666666653 22221 24566677766543 3334455556
Q ss_pred HHHhhcC--c------------hhhhhhhhcCchHHHHHHh----h-cCCHHHHHHHHHHHHHhhcCcccHHHHHHcCCh
Q 003146 373 LSRMELT--D------------QSRASLGEDGAIEPLVRMF----R-VGKLEAKLSALNALQNLSLLAENIQRLVISGIV 433 (844)
Q Consensus 373 L~~Ls~~--~------------~~~~~i~~~g~i~~Lv~lL----~-~~~~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v 433 (844)
|..|... + ..+..+.. -.|.++.++ . ..++.....++.+|..+.+--+ ...+++.+.+
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll 249 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHH
Confidence 6555432 1 11222332 245555544 2 3566777778888888876432 2456677777
Q ss_pred HHH-HHHhhccCCcchhhHHHHHHHHHHHhcC
Q 003146 434 SPL-LQLLFSVTSVLMTLREPASAILARIAQS 464 (844)
Q Consensus 434 ~~L-v~lL~~~~~~~~~l~~~a~~~L~~l~~~ 464 (844)
+.| ..+|.. ..++..|+.+|..+...
T Consensus 250 ~~L~~~~L~~-----~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 250 STLIYKFLNV-----PMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHTSSS-----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCC-----hHHHHHHHHHHHHHHhc
Confidence 776 355532 34789999999998764
No 123
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=71.94 E-value=52 Score=35.01 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHhcCh----hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCC----hhHHHHH------HHh
Q 003146 449 TLREPASAILARIAQSE----SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSS----ASNVRRK------MKE 514 (844)
Q Consensus 449 ~l~~~a~~~L~~l~~~~----~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~~~~------i~~ 514 (844)
.....++.+|..+.... .++.+.+++..++..+.+.++.++..++.+|..+|..++ ...+-.. ..+
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e 152 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 152 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCc
Confidence 34567888888888775 466777889999999998999999999999999998753 2112111 223
Q ss_pred CCcHHHHHHHhc-cCCHHHHHHHHHHHHHhhhhhh-HH----HHHHhchhhHHHHHHHhcCCCCHHH
Q 003146 515 NGAIHLLLPFLM-ETNANIRAAALNLVCTLSKDVY-EE----LAEQLGDKYLNILVDITLSSTSENE 575 (844)
Q Consensus 515 ~g~i~~Lv~ll~-~~~~~v~~~A~~~L~~ls~~~~-~~----i~~~l~~~~l~~Lv~lL~~~~~~~~ 575 (844)
..-...++..+. +.+.+.+..+..++..+....+ -. +...+..-++..++.-++...++..
T Consensus 153 ~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 153 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 445667888877 4455778788877776655433 12 2222333477777777776555443
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=70.90 E-value=19 Score=44.12 Aligned_cols=166 Identities=12% Similarity=0.111 Sum_probs=101.1
Q ss_pred chHHHHHHhhc----CCHHHHHHHHHHHHHhh----cCcccHHHHHHcCChHHHHHHhh----ccCCcchhhHHHHHHHH
Q 003146 391 AIEPLVRMFRV----GKLEAKLSALNALQNLS----LLAENIQRLVISGIVSPLLQLLF----SVTSVLMTLREPASAIL 458 (844)
Q Consensus 391 ~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs----~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~l~~~a~~~L 458 (844)
.+..+..++.+ .++..+..|.-++.+|. .+...| ....++++.+.+. ..+ ..-+..++.+|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~---~~~~~~~LkaL 464 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAK---EEEIVLALKAL 464 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHh
Confidence 34555666654 34556666766666654 332221 1123555555543 322 23356788888
Q ss_pred HHHhcChhhhcccchHHHHHHhhcc-------CChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHh--ccCC
Q 003146 459 ARIAQSESILVNKDVAQQMLSLLNL-------CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFL--METN 529 (844)
Q Consensus 459 ~~l~~~~~~l~~~~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll--~~~~ 529 (844)
.|+. ....++.|..++.. ....+|..|+++|..+.... +.. +-+.|+++. ...+
T Consensus 465 GN~g-------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p~~--------v~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 465 GNAG-------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--PRK--------VQEIVLPIFLNVAIK 527 (1056)
T ss_dssp HHHT-------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--HHH--------HHHHHHHHHHCTTSC
T ss_pred hccC-------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--hHH--------HHHHHHHHhcCCCCC
Confidence 8884 34567778887742 13468889999999987653 111 345677777 4566
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCC
Q 003146 530 ANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSN 590 (844)
Q Consensus 530 ~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 590 (844)
+++|..|...|-.. ..+.. .+..+...+....+.++.......|.+++...
T Consensus 528 ~EvRiaA~~~Lm~t--~P~~~--------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 528 SELRIRSCIVFFES--KPSVA--------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHHT--CCCHH--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHH--CcCHH--------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 79999988877422 11111 45667777776677888877777777776654
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=70.45 E-value=1.1e+02 Score=32.28 Aligned_cols=113 Identities=26% Similarity=0.277 Sum_probs=80.4
Q ss_pred CCcHHHHHHHhcC------------CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHH
Q 003146 266 VGSLSALVKSLTR------------DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLN 333 (844)
Q Consensus 266 ~g~i~~Lv~~L~~------------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~ 333 (844)
.+|+..|+..|.. +...+...+.+|+.+.........+.....+|..|+..|.+.++.++..|...|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5678888877742 1234567889999988887766667776889999999999999999999999999
Q ss_pred HhccCCc--c-HHHH----------HHcCChHHHHHHhccC-CHHHHHHHHHHHHHhhc
Q 003146 334 ALSSNTQ--N-ALHM----------AEAGYFKPLVQYLKEG-SDMSKILMATALSRMEL 378 (844)
Q Consensus 334 nLs~~~~--~-~~~i----------~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~ 378 (844)
.+|..++ + ...+ .+..-+.+++..|.++ +.+.+..+...+-.+..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 8886543 3 3332 2345688899999874 45555444444444433
No 126
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=70.11 E-value=83 Score=32.44 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=89.5
Q ss_pred HHHhccCCcc-HHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhh-cCCHHHHHH
Q 003146 332 LNALSSNTQN-ALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFR-VGKLEAKLS 409 (844)
Q Consensus 332 L~nLs~~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~ 409 (844)
|.||-.++.| ..-+++..++..+....+-.+.++.......|...+....-+..= -...+|.++..++ +++.++...
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEEe
Confidence 5566666655 667889999999999999998888777777777665543222111 1467788887775 677889999
Q ss_pred HHHHHHHhhcCcc-cHHHHHHcCChHHHHHHhhccCCcc----hhhHHHHHHHHHH
Q 003146 410 ALNALQNLSLLAE-NIQRLVISGIVSPLLQLLFSVTSVL----MTLREPASAILAR 460 (844)
Q Consensus 410 A~~aL~nLs~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~----~~l~~~a~~~L~~ 460 (844)
..+.|.|...+.. .+...+..|+|+.|-..+...++.+ ..-+..++++++|
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 9999999998865 5666778999998888776543311 1123456666654
No 127
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=69.33 E-value=54 Score=40.82 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHh--hcCCHHHHHHHHHHHHHhhcC-----cccHHHHHHcCChH
Q 003146 362 SDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMF--RVGKLEAKLSALNALQNLSLL-----AENIQRLVISGIVS 434 (844)
Q Consensus 362 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~aL~nLs~~-----~~~~~~i~~~g~v~ 434 (844)
+...|..|-..|..+...+ .+...+...| .+.++.+|..|+..|.|.... ++.....++..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~--- 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNS--- 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH---
Confidence 4456767777776654322 2333344333 345678899999999987532 33333333433
Q ss_pred HHHHHhhccC----CcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 435 PLLQLLFSVT----SVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 435 ~Lv~lL~~~~----~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
++..+.... ..+..++...+.+++.++..+---.=.+.++.+++++++ ++..++.++.+|..|+.
T Consensus 94 -ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 94 -VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp -HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 444443321 123567888888888887663110113678888888865 66778889999998874
No 128
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=68.80 E-value=79 Score=38.57 Aligned_cols=221 Identities=12% Similarity=0.121 Sum_probs=125.3
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhc-CCHHHHHHHHHHHHHhhcC-----ccc
Q 003146 350 YFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRV-GKLEAKLSALNALQNLSLL-----AEN 423 (844)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~-----~~~ 423 (844)
.++.++..+.+++...|..|-..|..+-.++ ++...+..+|.. .++.+|..|+..|.+.... ++.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 3455666666677777777777777765443 334444445543 4778999999999987642 333
Q ss_pred HHHHHHcCChHHHHHHhhccC--CcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 424 IQRLVISGIVSPLLQLLFSVT--SVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 424 ~~~i~~~g~v~~Lv~lL~~~~--~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
....++...+..+...-.++. .....++.+.+.+++.++...---.=.+.++.++.+++. ++...+..+.+|..|+.
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 333344444444443322210 011234567777777776543000113567777777753 56677888888888865
Q ss_pred CC-C----------hhHHHHHHHhCCcHHHHHH----Hhc-cCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhhHHHHH-
Q 003146 502 HS-S----------ASNVRRKMKENGAIHLLLP----FLM-ETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILV- 564 (844)
Q Consensus 502 ~~-~----------~~~~~~~i~~~g~i~~Lv~----ll~-~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~l~~Lv- 564 (844)
.- + ....++.+... .+.++. .+. ..++++...+..++..+..|.+-. .......+..|+
T Consensus 179 EV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~--~i~~~~ll~~L~~ 254 (1073)
T 3gjx_A 179 EVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLG--YIFETKLISTLIY 254 (1073)
T ss_dssp HHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH--HHHSSSHHHHHHH
T ss_pred HHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHH--HhccchHHHHHHH
Confidence 41 0 01223334432 344443 343 356778888889998888887622 122333555553
Q ss_pred HHhcCCCCHHHHHHHHHHHhcCC
Q 003146 565 DITLSSTSENEKAAAVGILSNLP 587 (844)
Q Consensus 565 ~lL~~~~~~~~~~~a~~~L~~L~ 587 (844)
.+| ++++.+..|+.+|..+.
T Consensus 255 ~~L---~~~~~r~aA~dcL~eIv 274 (1073)
T 3gjx_A 255 KFL---NVPMFRNVSLKCLTEIA 274 (1073)
T ss_dssp HTS---SSHHHHHHHHHHHHHHH
T ss_pred Hhc---CChHHHHHHHHHHHHHH
Confidence 444 45677888888777764
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=64.67 E-value=96 Score=32.90 Aligned_cols=98 Identities=24% Similarity=0.242 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc--c-HHHH----------HH
Q 003146 281 EEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ--N-ALHM----------AE 347 (844)
Q Consensus 281 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~--~-~~~i----------~~ 347 (844)
+.+..++.+|+.+.........+....++|..|+..|.++++.++..+...|..+|..+. + ...+ -+
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e 152 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 152 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCc
Confidence 346678889998888876666666668899999999999999999999988888886543 3 3322 23
Q ss_pred cCChHHHHHHhccC-CHHHHHHHHHHHHHhhc
Q 003146 348 AGYFKPLVQYLKEG-SDMSKILMATALSRMEL 378 (844)
Q Consensus 348 ~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~Ls~ 378 (844)
..-+.++|+.|..+ +.+.+..+...+-.+..
T Consensus 153 ~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~ 184 (386)
T 2bnx_A 153 VERFQPLLDGLKSGTSIALKVGCLQLINALIT 184 (386)
T ss_dssp SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence 45788889888754 34445444444433433
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=58.95 E-value=1.9e+02 Score=35.94 Aligned_cols=207 Identities=13% Similarity=0.035 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHH-hh-cCCChHHHHHHHHHHHHhcc------CCccHHHHHHcCC
Q 003146 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVS-ML-SGNDPVASHDAGKLLNALSS------NTQNALHMAEAGY 350 (844)
Q Consensus 279 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-lL-~s~d~~~~~~A~~~L~nLs~------~~~~~~~i~~~g~ 350 (844)
+.+.|++|-..|.++.+.+ .+.+.+.. +. .+.++.++..|...|.|... .++.+..+ +...
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~l 94 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSV 94 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHH
Confidence 3456778888877654433 23333333 33 45678888888888888752 22223333 2233
Q ss_pred hHHHHHHhcc---CCHHHHHHHHHHHHHhhcCchhhhhhhh-cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC---c--
Q 003146 351 FKPLVQYLKE---GSDMSKILMATALSRMELTDQSRASLGE-DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL---A-- 421 (844)
Q Consensus 351 i~~Lv~~L~~---~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~-- 421 (844)
+..+...-.. .+..++...+.++..++..+-. .+ .+.++.|+.++.+ ++..++.++.+|..|+.. .
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 3333322111 3466777788888887765321 11 5788899999876 556678888888888642 1
Q ss_pred --ccHHH-----HHHc--CChHHHHHHhhccC----------------CcchhhHHHHHHHHHHHhcC-h-hhhccc--c
Q 003146 422 --ENIQR-----LVIS--GIVSPLLQLLFSVT----------------SVLMTLREPASAILARIAQS-E-SILVNK--D 472 (844)
Q Consensus 422 --~~~~~-----i~~~--g~v~~Lv~lL~~~~----------------~~~~~l~~~a~~~L~~l~~~-~-~~l~~~--~ 472 (844)
..+.. +.+. .+++.+..++.... .....+...++.++.+...- + ..+.+. .
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ 249 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCK 249 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccch
Confidence 11111 2111 12223333343210 00112344455555433222 1 122222 3
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHS 503 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 503 (844)
.++.+..++. ++.++..|+.+|..+....
T Consensus 250 ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 250 LLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 5666666654 6889999999999998764
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.15 E-value=40 Score=30.91 Aligned_cols=67 Identities=4% Similarity=0.060 Sum_probs=49.3
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++....++.++.-+...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 4566777788899999999999999999888777664444 447788888887545666665444433
No 132
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=55.60 E-value=53 Score=33.38 Aligned_cols=145 Identities=13% Similarity=0.091 Sum_probs=89.6
Q ss_pred HHHHHHHHcCC------ChHHHHHHHHHHHHHHhcCCcChHHHhhCCCHHHHHHHh--CCCCchHHHHHHHHHHHhHhcC
Q 003146 185 IDDVMLQLKHG------DDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRL--GSSKPYNRLIMIQILRNLASEN 256 (844)
Q Consensus 185 i~~lv~~L~~~------~~~~~~~a~~~l~~L~~~~~~~~~~i~~~~~~p~l~~lL--~s~~~~~~~~a~~~L~~L~~~~ 256 (844)
...+..+++++ +...+..+++.+.+++.|-.|.-+.+... -+.+..++ .+..+.++..+.+++..-..+|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e--f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE--FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH--HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc--HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 44556667666 22356778888999998876654555422 23344433 3445668888988888777777
Q ss_pred hhhHHHHhc--CCcHHHHHHHhcC--------CHHHHHHHHHHHHHccCCChhHHHHhhhhCcHHHHHHhhcCC--ChHH
Q 003146 257 ADYKEKMAN--VGSLSALVKSLTR--------DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGN--DPVA 324 (844)
Q Consensus 257 ~~~~~~i~~--~g~i~~Lv~~L~~--------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s~--d~~~ 324 (844)
+..-..|.. ..-+..+..-|.. ..-.++.-+.+|..|.+++. .+ . ..++..|.+++... ++.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~-~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-P-IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC----CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-h-hccHHHHHHHHccCCCCHHH
Confidence 776544432 3333333333321 11346667788888888862 12 1 45667777777666 8899
Q ss_pred HHHHHHHHHHhc
Q 003146 325 SHDAGKLLNALS 336 (844)
Q Consensus 325 ~~~A~~~L~nLs 336 (844)
+..+...+..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 988887776654
No 133
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.47 E-value=17 Score=36.16 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHHHHhccCCc-cHHHHHHcCChHHHHHHhcc--------CCHHHHHHHHHHHHHhhcCchh-hhhhhh
Q 003146 319 GNDPVASHDAGKLLNALSSNTQ-NALHMAEAGYFKPLVQYLKE--------GSDMSKILMATALSRMELTDQS-RASLGE 388 (844)
Q Consensus 319 s~d~~~~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~~L~~--------~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~ 388 (844)
+.++..+-.+++++.|+-.++. .+..+........+++.+.+ .+..++..++..+.|++..... +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 5567788899999999998888 56666543334445554422 1345677788888999874221 11 1
Q ss_pred cCchHHHHHHhhc---------CCHHHHHHHHHHHHHhhcC
Q 003146 389 DGAIEPLVRMFRV---------GKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 389 ~g~i~~Lv~lL~~---------~~~~~~~~A~~aL~nLs~~ 420 (844)
......++..+.. .+++....++.||++|...
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 2344556665552 2566777788888888753
No 134
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=51.18 E-value=72 Score=33.77 Aligned_cols=67 Identities=7% Similarity=0.135 Sum_probs=50.4
Q ss_pred cCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHH
Q 003146 650 HGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLI 729 (844)
Q Consensus 650 ~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv 729 (844)
.+++|.++.+-.+.+.++|+..+..|...+.....+. ..+++.|.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----------------------------------~~~l~~L~ 106 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----------------------------------LKLIANLN 106 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
Confidence 3677888888888889999999888887765332211 23678888
Q ss_pred HhhcCCChhhHHHHHHHHHhhh
Q 003146 730 QVLEGKEREADETVLGALASLL 751 (844)
Q Consensus 730 ~lL~~~~~~v~~~A~~AL~~L~ 751 (844)
.+|.++++.|...++.+..++-
T Consensus 107 ~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 107 MLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHH
Confidence 8999999999888888777653
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.14 E-value=30 Score=30.84 Aligned_cols=72 Identities=10% Similarity=0.122 Sum_probs=54.1
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLS 544 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls 544 (844)
.++..|..-|...+|.++..|+..|-.+..+.+ ......+.....+..|+.++...++.|+.....++..-+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 345556666777899999999888877766654 555666666667888888887788899999998886554
No 136
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=49.44 E-value=88 Score=31.03 Aligned_cols=104 Identities=14% Similarity=0.258 Sum_probs=64.2
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHh
Q 003146 652 VIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV 731 (844)
Q Consensus 652 ~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~l 731 (844)
+++.+..+..+.+.++|+..+..+.........+ -..+++.|..+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----------------------------------~~~~l~~L~~L 98 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----------------------------------LPHVINVVSML 98 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHH
Confidence 4455556556677888888888887776443332 13367888899
Q ss_pred hcCCChhhHHHHHHHHHhhhccccchhhhHHHHhcCC--------------h-HHHHHHhhcCCHHHHHHHHHHHHHHH
Q 003146 732 LEGKEREADETVLGALASLLQDETWESGSNYLAKLSG--------------T-QAIIKVLESGNAKAQEKALWILERIF 795 (844)
Q Consensus 732 L~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i~~~g~--------------i-~~lv~ll~~~~~~~~~~A~~~L~~i~ 795 (844)
|+++++.|...+..+..++-.-- -+.+...+. + ..++.+..+++..+|-.|+.-++++.
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~-----l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNG-----LQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHH-----HHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHH-----HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 99989999888888777653221 011111111 1 12445556677777777777666654
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=49.43 E-value=1.7e+02 Score=29.66 Aligned_cols=148 Identities=9% Similarity=0.003 Sum_probs=87.9
Q ss_pred hHHHHHHhccC----CHH--HHHHHHHHHHHhhcCchhhhhhhh--cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC-c
Q 003146 351 FKPLVQYLKEG----SDM--SKILMATALSRMELTDQSRASLGE--DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-A 421 (844)
Q Consensus 351 i~~Lv~~L~~~----~~~--~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~ 421 (844)
+..+..++++| ... .-..+...|..++.+-++-..|.+ ...+..|+ +....++..++.|.+.|..--.+ |
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 44455666666 112 233677778888877655444443 34444444 33445567888888888776654 5
Q ss_pred ccHHHHHH--cCChHHHHHHhhc----cCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccC--ChHHHHHHH
Q 003146 422 ENIQRLVI--SGIVSPLLQLLFS----VTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLC--SPTIQYHLL 493 (844)
Q Consensus 422 ~~~~~i~~--~g~v~~Lv~lL~~----~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~--~~~~~~~a~ 493 (844)
+....+.+ ...+..+..-|.. .+.....+...-+.+|-.|..++.-+ ...++..|..++... ++.+|..++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-PIYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-hhccHHHHHHHHccCCCCHHHHHHHH
Confidence 55555554 3444444444332 11122356677888888888876433 345667777777766 888888888
Q ss_pred HHHHHhh
Q 003146 494 HALNSIA 500 (844)
Q Consensus 494 ~~L~~L~ 500 (844)
.++..+-
T Consensus 182 ~li~d~f 188 (315)
T 3qml_C 182 ELISKIL 188 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776654
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=48.18 E-value=72 Score=28.70 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=48.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHh-chhhHHHHHHHhcCC-----CCHHHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQL-GDKYLNILVDITLSS-----TSENEKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l-~~~~l~~Lv~lL~~~-----~~~~~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+ ....+..|++++... .+..++.-+...+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 456666777889999999999999999998887776554 444788899988742 3556665444433
No 139
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=46.42 E-value=1.1e+02 Score=37.04 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=99.6
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhccC-CccHHHHHHcCChHHHHHHhcc---CCHHHHHHHHHHHHHhhcCchhhh
Q 003146 309 CIVMLVSMLSGNDPVASHDAGKLLNALSSN-TQNALHMAEAGYFKPLVQYLKE---GSDMSKILMATALSRMELTDQSRA 384 (844)
Q Consensus 309 ~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~~L~~---~~~~~~~~aa~~L~~Ls~~~~~~~ 384 (844)
.+.-|+++.-|.-++++..|-.+|...... +..+.. .++.+++.|.. +.+.-+. -++|.-|....-.+.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~i--KGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKI--QVILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHH--HHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHH--HHHHHHHhhhhhhhH
Confidence 344677777788899999998888877643 333333 36677777765 3222222 223333322111111
Q ss_pred hhhh----cCchHHHHHHhhcCCHHHHHHHHHHHHHhhcC---cc---------------------------------cH
Q 003146 385 SLGE----DGAIEPLVRMFRVGKLEAKLSALNALQNLSLL---AE---------------------------------NI 424 (844)
Q Consensus 385 ~i~~----~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~---------------------------------~~ 424 (844)
...+ ...++.|++.....++.++.-+-.+...+... |. ++
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 1112 23445555555555555544443333333220 00 00
Q ss_pred HHHHH--cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhc
Q 003146 425 QRLVI--SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAA 501 (844)
Q Consensus 425 ~~i~~--~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 501 (844)
....+ .+....|++...+..+........++..|.++....+......++..+++.+.+..|.+|..|..++..+..
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~ 365 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 00111 122333344442222111344556666767776665555667888999999999999999999988866543
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.86 E-value=82 Score=29.07 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=49.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcC-----CCCHHHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLS-----STSENEKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~-----~~~~~~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++.. ..+..++.-+...+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 4566777788899999999999999999988877665444 4478889998863 23456665544444
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.31 E-value=78 Score=28.45 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=49.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCC-----CCHHHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSS-----TSENEKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~-----~~~~~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++... .+..++.-+...+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 4566677788999999999999999999988877765544 45788899888742 3556665444433
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=45.06 E-value=41 Score=30.88 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=53.0
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNANIRAAALNLVCTLS 544 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls 544 (844)
++..|..-|...+|.++..|+.+|-.+..+.+ ......+....++..|+.++.. .++.|+.++..++..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG-~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCG-KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 45556666777899999999988877777654 5666677777788888888875 45789999888876543
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.10 E-value=63 Score=31.39 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=48.3
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|+++++...+..++.-+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4566777788999999999999999999888876665544 446677777776555666665444433
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=43.02 E-value=46 Score=29.97 Aligned_cols=72 Identities=7% Similarity=0.111 Sum_probs=55.5
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc------CCHHHHHHHHHHHHHhhh
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME------TNANIRAAALNLVCTLSK 545 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~A~~~L~~ls~ 545 (844)
++..|..-+.+.+|.++..|+.+|-.+..+.+ ......+....++..|+.++.. .++.|+.+.+.++..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45556666778899999999998888877754 5667777778889999998874 356899999888865543
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.51 E-value=68 Score=30.98 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=46.9
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVG 581 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~ 581 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|++++.+..+..++.-+..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~ 108 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLE 108 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4556667778899999999999999999888776654443 4477778887765555566544443
No 146
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=42.13 E-value=44 Score=29.77 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=46.0
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhC-CcHHHHHHHhccCC--------HHHHHHHHHHHHHh
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKEN-GAIHLLLPFLMETN--------ANIRAAALNLVCTL 543 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~-g~i~~Lv~ll~~~~--------~~v~~~A~~~L~~l 543 (844)
....|..=|+..++.++..|+.+|-.||.+++ +..+..+.+. ..|..+..+-.-++ ..||..|..++..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 45556666777889999999999999998875 5555555443 33444433322222 25777777777666
Q ss_pred h
Q 003146 544 S 544 (844)
Q Consensus 544 s 544 (844)
.
T Consensus 129 ~ 129 (140)
T 1vdy_A 129 F 129 (140)
T ss_dssp T
T ss_pred h
Confidence 4
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=41.39 E-value=1.5e+02 Score=26.20 Aligned_cols=66 Identities=5% Similarity=0.081 Sum_probs=45.4
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHHHHHHhcCCCCHHHHHHHHHHH
Q 003146 517 AIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNILVDITLSSTSENEKAAAVGIL 583 (844)
Q Consensus 517 ~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~Lv~lL~~~~~~~~~~~a~~~L 583 (844)
++..|..-+.++++.++..|+.+|..+..+.+..+...+. ...+..|+++++. .++.++.-+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li 109 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 4556666678889999999999999999888877664443 4466777777753 4555554444333
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.33 E-value=64 Score=29.06 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=55.2
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc------CCHHHHHHHHHHHHHhhh
Q 003146 473 VAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME------TNANIRAAALNLVCTLSK 545 (844)
Q Consensus 473 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~A~~~L~~ls~ 545 (844)
++..|..-+.+.+|.++..|+.+|-.+..+.+ ......+....++..|+.++.. .++.|+.+...++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45566666778899999999988888777765 5666777777788999999863 457899999888866543
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.70 E-value=52 Score=30.44 Aligned_cols=72 Identities=6% Similarity=0.098 Sum_probs=54.9
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc------CCHHHHHHHHHHHHHhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME------TNANIRAAALNLVCTLS 544 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~v~~~A~~~L~~ls 544 (844)
.++..|..-+.+.++.++..|+.+|-.+..+.+ ......+....++..|+.++.. .+..|+.+++.++..-+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345566666778899999999988887777643 5666777778889999999863 34689999988886554
No 150
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=35.96 E-value=1.1e+02 Score=32.78 Aligned_cols=127 Identities=12% Similarity=0.046 Sum_probs=76.7
Q ss_pred HHHHHHHHHccCCChhHHHHhhhhCcHHHHHH-hhcCCChHHHHHHHHHHHHhccCCccHHHHHH-cCChHHHHHHhccC
Q 003146 284 REAVGLLLDLSDLPAVWRRIGRIQGCIVMLVS-MLSGNDPVASHDAGKLLNALSSNTQNALHMAE-AGYFKPLVQYLKEG 361 (844)
Q Consensus 284 ~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~~L~~~ 361 (844)
--++..||.+..++..... +..++. .+.+..+..+..+++++.||-.++.....++. ......+++.+...
T Consensus 244 FPaLDLLRl~v~~p~~~~~-------l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 244 TPAYDIVRLIVKKLPYSSD-------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp HHHHHHHHHHGGGCSCGGG-------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHcCCchHHH-------HHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 3466677766665543322 222332 23356678888999999999888875444443 22345566655321
Q ss_pred --------CHHHHHHHHHHHHHhhcCchh-hhhhhhcCchHHHHHHhh---------cCCHHHHHHHHHHHHHhhcC
Q 003146 362 --------SDMSKILMATALSRMELTDQS-RASLGEDGAIEPLVRMFR---------VGKLEAKLSALNALQNLSLL 420 (844)
Q Consensus 362 --------~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~~ 420 (844)
+..++..++..+.|++..... +. +...+..++..+. ..+.+....++.||++|...
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 234667777888999874321 11 1234456666665 24778888889999999853
No 151
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=32.68 E-value=4.6e+02 Score=27.55 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=73.9
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHH
Q 003146 348 AGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRL 427 (844)
Q Consensus 348 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i 427 (844)
...++.++++-.+.+.++|...+..|......+ ..+. ..+++.|..+|++.++.+.+.++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el~-~~~l~~L~~LL~d~d~~V~K~~I~~~tsl---------- 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IELL-LKLIANLNMLLRDENVNVVKKAILTMTQL---------- 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHH----------
Confidence 367888888877888889999988888765422 1111 35678889999988998888887776654
Q ss_pred HHcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHH
Q 003146 428 VISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS 498 (844)
Q Consensus 428 ~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 498 (844)
.|..++.+........ ..+.+...+.. .-..++.++.+++..+|-.|+..+-.
T Consensus 128 -----Ypl~f~~i~~~~~~~~-~~e~~W~~m~~------------lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 128 -----YKVALQWMVKSRVISE-LQEACWDMVSA------------MAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp -----HHHHHHHHHHC-CCCH-HHHHHHHHHHH------------HHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCCCcch-hHHHHHHHHHH------------HHHHHHHHhccCCcchHHHHHHHHHH
Confidence 2344455444332111 11222222221 23456666777777788877766544
No 152
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=32.48 E-value=74 Score=33.31 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHccCCChhHHHHhhhhCcHHHHHH-hhcCCChHHHHHHHHHHHHhccCCccHHHHHHc-CChHHHHHHhc----
Q 003146 286 AVGLLLDLSDLPAVWRRIGRIQGCIVMLVS-MLSGNDPVASHDAGKLLNALSSNTQNALHMAEA-GYFKPLVQYLK---- 359 (844)
Q Consensus 286 A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~~L~---- 359 (844)
++..||.+..++..... +..++. .+.+..+..+..+++++.||-.++.....++.. .....+++.+.
T Consensus 183 ~LDLLRl~v~~~~~~~~-------l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~ 255 (362)
T 3l3f_X 183 AYDIVRLIVKKLPYSSD-------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFS 255 (362)
T ss_dssp HHHHHHHHGGGCSCGGG-------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCS
T ss_pred HHHHHHHHhcCCChHHH-------HHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhh
Confidence 55556655554433222 222222 233556778889999999998888754444422 12334454442
Q ss_pred cC----CHHHHHHHHHHHHHhhcCchh-hhhhhhcCchHHHHHHhh---------cCCHHHHHHHHHHHHHhhc
Q 003146 360 EG----SDMSKILMATALSRMELTDQS-RASLGEDGAIEPLVRMFR---------VGKLEAKLSALNALQNLSL 419 (844)
Q Consensus 360 ~~----~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~ 419 (844)
.. +..++..++..+.|++..... +.. ......++..+. ..+++....++.||++|..
T Consensus 256 ~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 256 QASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11 234667777888899874321 111 234456666665 2477888888999999985
No 153
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=28.63 E-value=28 Score=25.96 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=29.9
Q ss_pred hHhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 003146 46 KFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSN 88 (844)
Q Consensus 46 ~l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~ 88 (844)
.|..+++|+...=+|- -.-.+.+.+-|.+-+..|+.|+..|-
T Consensus 15 ~LL~VIeEmgkdIrpT-YaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKEIRPT-YAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchh-hccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4566778886321221 01346789999999999999999994
No 154
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=25.10 E-value=3.4e+02 Score=25.89 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=55.7
Q ss_pred HhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHH-HHhcc-------------hhhHHHHHHHHHHHHHHhhhhhhh
Q 003146 47 FSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSL-IKSSN-------------SRLVSKQMEDLTQDMGRSLGLVLF 112 (844)
Q Consensus 47 l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l-~~~c~-------------s~~i~~~~~~~~~~~~~~l~~~~~ 112 (844)
+..+...|+.. .|. +.....||+-+-.+.+|-+.- |.++. ...|..+++++...|.++|+.|--
T Consensus 112 le~y~~ALq~~-pP~-~~~vl~aLk~yirae~KDR~Htl~hf~Hv~~~dpe~A~~~k~~vl~hL~~Id~r~NqSL~lL~~ 189 (219)
T 3pmr_A 112 LEGFLAALQAD-PPQ-AERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQ 189 (219)
T ss_dssp HHHHHHHHTSS-SCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC-CCC-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHhhcchHHHHHHHHHHHHHhhhHHHHHc
Confidence 33444555533 444 668888998888888876665 55553 248999999999999999998821
Q ss_pred hhhccchhHHHHHHHH
Q 003146 113 ASVELEVDVKEKIGSL 128 (844)
Q Consensus 113 ~~~~~~~~~~e~i~~~ 128 (844)
. -+|+.+|+.+|+.+
T Consensus 190 ~-P~l~~~i~~~i~~l 204 (219)
T 3pmr_A 190 N-PHLAQELRPQIQEL 204 (219)
T ss_dssp S-HHHHHHHHHHHHHH
T ss_pred C-chHHHHHhHHHHHH
Confidence 1 16777888887655
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.15 E-value=2.5e+02 Score=25.29 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=44.7
Q ss_pred cHHHHHHHhc-cCCHHHHHHHHHHHHHhhhhhhHHHHHHhc-hhhHHH-HHHHhcCC--CCHHHHHHHHHH
Q 003146 517 AIHLLLPFLM-ETNANIRAAALNLVCTLSKDVYEELAEQLG-DKYLNI-LVDITLSS--TSENEKAAAVGI 582 (844)
Q Consensus 517 ~i~~Lv~ll~-~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~-~~~l~~-Lv~lL~~~--~~~~~~~~a~~~ 582 (844)
++..|..-+. ++++.++..|+.+|..+..+.+..+...+. ...+.. |++++... ....++.-+...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~l 124 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNL 124 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 4556666676 478899999999999999888877765544 447777 78877532 234555444433
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.95 E-value=99 Score=29.98 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=52.4
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 003146 472 DVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLME-TNANIRAAALNLVCTLS 544 (844)
Q Consensus 472 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~A~~~L~~ls 544 (844)
.++..|..-|...+|.++..|+.+|-.+..+.+ ......|....++..|+.++.. .++.|+...+.++...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG-~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCG-QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-HHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-hHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 345566666778899999999998888877654 4556666666777788887765 34578888888886554
No 157
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=23.66 E-value=5.3e+02 Score=25.30 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=70.1
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhhcCchhhhhhhhcCchHHHHHHhhcCCHHHHHHHHHHHHHhhcCcccHHHHHH
Q 003146 350 YFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI 429 (844)
Q Consensus 350 ~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~~~~~i~~ 429 (844)
.++.++++-.+.+.++|...+..+......+. . .....++.|..+|++.++.+.+.++.+..++
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~-l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i------------ 117 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---E-LLPHVINVVSMLLRDNSAQVIKRVIQACGSI------------ 117 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---G-GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------
Confidence 45556665555567788888888877663221 1 1235778889999998898888887766554
Q ss_pred cCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcChhhhcccchHHHHHHhhccCChHHHHHHHHHHHH
Q 003146 430 SGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS 498 (844)
Q Consensus 430 ~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 498 (844)
.|..++.+-...+.+. ..+.+...+. ..-..++.++.+++..+|-.|+..+-.
T Consensus 118 ---Y~~~l~~i~~~~~~~~-~~~~~W~~m~------------~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 118 ---YKNGLQYLCSLMEPGD-SAEQAWNILS------------LIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp ---HHHHHHHHTTSSSCCH-HHHHHHHHHH------------HHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCCCcc-hHHHHHHHHH------------HHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 3445555544432111 1122222222 123456666777778888877766544
No 158
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=23.53 E-value=3.6e+02 Score=25.58 Aligned_cols=80 Identities=10% Similarity=0.185 Sum_probs=55.9
Q ss_pred HhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHH-HHhcc-------------hhhHHHHHHHHHHHHHHhhhhhhh
Q 003146 47 FSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSL-IKSSN-------------SRLVSKQMEDLTQDMGRSLGLVLF 112 (844)
Q Consensus 47 l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l-~~~c~-------------s~~i~~~~~~~~~~~~~~l~~~~~ 112 (844)
+..+...|+.. .|. +.....||+-+-.+.+|-+.- |.++. ...|..+++++..-|.++|+.|--
T Consensus 105 le~y~~ALq~~-pp~-~~~il~aLk~yirae~KDR~Hti~hy~Hv~~~dpe~A~~~k~~v~~hL~~id~r~NqsL~lL~~ 182 (211)
T 3umh_A 105 LENYITALQAV-PPR-PRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYN 182 (211)
T ss_dssp HHHHHHHHTCS-SCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhcC-CCC-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCHHHHHhcchHHHHHHHHHHHHHhHhHHHHHh
Confidence 34455555533 444 668888999888888876665 55553 238999999999999999998821
Q ss_pred hhhccchhHHHHHHHHH
Q 003146 113 ASVELEVDVKEKIGSLH 129 (844)
Q Consensus 113 ~~~~~~~~~~e~i~~~~ 129 (844)
. -.|+.+++.+|+.+.
T Consensus 183 ~-P~l~~~i~~~~~e~l 198 (211)
T 3umh_A 183 V-PAVAEEIQDEVDELL 198 (211)
T ss_dssp S-HHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHH
Confidence 1 267777777775553
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.92 E-value=1.6e+02 Score=26.57 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=50.6
Q ss_pred hHHHHHHhhc-cCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHH-HHHHhcc---CCHHHHHHHHHHHHHhh
Q 003146 473 VAQQMLSLLN-LCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHL-LLPFLME---TNANIRAAALNLVCTLS 544 (844)
Q Consensus 473 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~-Lv~ll~~---~~~~v~~~A~~~L~~ls 544 (844)
++..|..-|+ ..++.++..|+.+|-.+..+.+ ......+.....+.. |+.++.. ....|+.++..++..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG-~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG-HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3455555565 4788899999988887777754 566667777778887 7888742 23589988888886543
No 160
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.58 E-value=1.6e+02 Score=29.00 Aligned_cols=102 Identities=10% Similarity=0.055 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHhhcCcc-cHHHHHHcCChHHHHHHhhccC-----CcchhhHHHHHHHHHHHhcChh-hhcccch
Q 003146 401 VGKLEAKLSALNALQNLSLLAE-NIQRLVISGIVSPLLQLLFSVT-----SVLMTLREPASAILARIAQSES-ILVNKDV 473 (844)
Q Consensus 401 ~~~~~~~~~A~~aL~nLs~~~~-~~~~i~~~g~v~~Lv~lL~~~~-----~~~~~l~~~a~~~L~~l~~~~~-~l~~~~~ 473 (844)
++++..+.-+++++.|+-.++. .+..+........+++.+.+.- .....++..++..+.|++..-. .-.....
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4567788999999999999888 5555544323444555442211 0123467778888888875310 0001233
Q ss_pred HHHHHHhhcc---------CChHHHHHHHHHHHHhhcC
Q 003146 474 AQQMLSLLNL---------CSPTIQYHLLHALNSIAAH 502 (844)
Q Consensus 474 i~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~~ 502 (844)
...+++.+.. .+++....++-+|.+|...
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 4455555542 3667777788888877653
No 161
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=21.24 E-value=57 Score=28.84 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=53.0
Q ss_pred hHHHhhHHHHHHHHHhHhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcchh--h-------HHHHHHHHHH
Q 003146 31 EYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSNSR--L-------VSKQMEDLTQ 101 (844)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~s~--~-------i~~~~~~~~~ 101 (844)
.+-+++=..|++++.-+..+|+.|... ..+..+.. .-.....-.-+|++.|++.+.+| . ++.+..+..-
T Consensus 27 ~~Lk~hRe~LV~rl~~v~~LLD~LL~~-gvLs~EE~-EiV~~~~T~~dKaRrLLDlV~sKGe~a~e~Ll~~Lqql~day~ 104 (144)
T 4e9m_A 27 QLLKSNRELLVTHIRNTQCLVDNLLKN-DYFSAEDA-EIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYV 104 (144)
T ss_dssp HHHHHTHHHHHHHCCCCHHHHHHHHHT-TSSCHHHH-HHHHTSSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHc-CCCCHHHH-HHHhccCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccc
Confidence 345667778999999999999999977 45534333 44455666789999999999854 3 3333344444
Q ss_pred HHHHhhhhhhhh
Q 003146 102 DMGRSLGLVLFA 113 (844)
Q Consensus 102 ~~~~~l~~~~~~ 113 (844)
++--.|+.|.+.
T Consensus 105 dl~pwl~ei~~~ 116 (144)
T 4e9m_A 105 DLRPWLLEIGFS 116 (144)
T ss_dssp GGHHHHHHTTCC
T ss_pred chhHHHHHhCCC
Confidence 444445554433
No 162
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=20.78 E-value=56 Score=24.70 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=29.1
Q ss_pred hHhHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 003146 46 KFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSN 88 (844)
Q Consensus 46 ~l~~~~~el~~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~ 88 (844)
.|..+++|+...-+|-. .-.+.+.+-|..-+..|+.|+..|-
T Consensus 19 ~LL~vIeEmgkdirPTy-agsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 19 DLLSVIEEMGKEIRPTY-AGSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHHTTHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccchh-hcCcchHHHHHHHHHHHHHHHHHHH
Confidence 45567788853212210 1346688999999999999999994
Done!