Query 003147
Match_columns 844
No_of_seqs 355 out of 1810
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 6E-218 1E-222 1890.7 77.3 809 19-844 22-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 8E-153 2E-157 1293.1 41.9 623 24-741 17-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.3E-89 2.8E-94 751.9 19.8 297 33-338 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 4E-40 8.6E-45 384.2 8.2 289 27-324 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 6.1E-21 1.3E-25 214.5 13.9 262 48-341 2-373 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 3.3E-20 7.1E-25 164.0 6.5 76 766-843 1-80 (80)
7 KOG4729 Galactoside-binding le 99.8 5E-19 1.1E-23 183.2 8.0 86 757-844 39-130 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.3 9.5E-11 2.1E-15 128.1 18.2 149 27-216 1-155 (298)
9 PRK10150 beta-D-glucuronidase; 99.1 8.8E-09 1.9E-13 123.3 24.3 157 25-216 276-446 (604)
10 PRK10340 ebgA cryptic beta-D-g 98.9 3.3E-08 7.1E-13 124.4 17.9 187 25-254 318-514 (1021)
11 PF00150 Cellulase: Cellulase 98.9 2.4E-08 5.1E-13 106.8 14.3 159 37-217 4-170 (281)
12 PRK09525 lacZ beta-D-galactosi 98.9 4.5E-08 9.8E-13 123.0 18.0 147 25-216 334-486 (1027)
13 COG3250 LacZ Beta-galactosidas 98.8 8.2E-08 1.8E-12 116.9 16.7 135 25-206 284-424 (808)
14 PF13364 BetaGal_dom4_5: Beta- 98.3 8.5E-07 1.8E-11 83.6 4.8 45 642-714 60-104 (111)
15 PF13364 BetaGal_dom4_5: Beta- 98.2 9.2E-06 2E-10 76.6 10.1 85 465-556 23-110 (111)
16 smart00633 Glyco_10 Glycosyl h 98.1 1.1E-05 2.3E-10 86.7 8.4 116 79-219 3-125 (254)
17 PF03198 Glyco_hydro_72: Gluca 98.0 5.6E-05 1.2E-09 82.5 12.6 154 22-214 6-178 (314)
18 PLN02705 beta-amylase 97.9 2.1E-05 4.6E-10 91.0 8.1 80 55-140 267-358 (681)
19 PF02837 Glyco_hydro_2_N: Glyc 97.9 7.2E-05 1.6E-09 74.6 10.7 99 473-577 64-164 (167)
20 PLN02905 beta-amylase 97.9 3.1E-05 6.7E-10 90.0 8.7 81 56-140 286-376 (702)
21 PLN02801 beta-amylase 97.8 3.8E-05 8.3E-10 87.9 8.3 81 54-140 35-127 (517)
22 PLN00197 beta-amylase; Provisi 97.8 5E-05 1.1E-09 87.5 8.7 83 54-140 125-217 (573)
23 PLN02803 beta-amylase 97.8 5.1E-05 1.1E-09 87.3 8.6 81 56-140 107-197 (548)
24 PLN02161 beta-amylase 97.7 8.6E-05 1.9E-09 85.0 9.2 82 55-140 116-207 (531)
25 TIGR03356 BGL beta-galactosida 97.7 6.7E-05 1.5E-09 86.5 8.0 96 56-163 54-150 (427)
26 PF13204 DUF4038: Protein of u 97.6 0.00095 2.1E-08 73.2 15.1 226 31-285 2-274 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.3 0.00023 4.9E-09 80.3 5.1 114 57-180 17-152 (402)
28 PF00331 Glyco_hydro_10: Glyco 97.0 0.001 2.2E-08 74.1 6.0 157 43-220 11-179 (320)
29 COG3693 XynA Beta-1,4-xylanase 96.8 0.0048 1E-07 67.5 9.2 133 65-220 55-194 (345)
30 PF14488 DUF4434: Domain of un 96.8 0.012 2.6E-07 59.5 11.6 136 51-216 15-158 (166)
31 COG2730 BglC Endoglucanase [Ca 96.6 0.0051 1.1E-07 70.7 8.3 118 54-186 66-193 (407)
32 PF07745 Glyco_hydro_53: Glyco 96.5 0.006 1.3E-07 68.1 7.9 104 59-186 27-137 (332)
33 PF00232 Glyco_hydro_1: Glycos 96.5 0.0023 4.9E-08 74.7 4.2 96 56-163 58-155 (455)
34 PRK09852 cryptic 6-phospho-bet 96.2 0.0041 8.8E-08 72.8 4.1 96 56-163 71-169 (474)
35 PLN02998 beta-glucosidase 96.2 0.0044 9.5E-08 72.9 4.3 100 56-163 82-183 (497)
36 PRK15014 6-phospho-beta-glucos 96.1 0.006 1.3E-07 71.5 4.9 96 56-163 69-167 (477)
37 PLN02814 beta-glucosidase 96.0 0.0058 1.2E-07 72.1 4.4 101 55-163 76-178 (504)
38 PRK10150 beta-D-glucuronidase; 95.9 0.054 1.2E-06 65.4 11.9 100 474-579 62-179 (604)
39 PRK09593 arb 6-phospho-beta-gl 95.7 0.013 2.7E-07 68.9 5.3 100 56-163 73-175 (478)
40 PRK09589 celA 6-phospho-beta-g 95.5 0.014 3.1E-07 68.4 4.7 100 56-163 67-169 (476)
41 PLN02849 beta-glucosidase 95.5 0.014 3E-07 68.9 4.6 100 56-163 79-180 (503)
42 TIGR01233 lacG 6-phospho-beta- 95.4 0.017 3.7E-07 67.6 5.0 95 56-162 53-148 (467)
43 PRK13511 6-phospho-beta-galact 95.4 0.044 9.5E-07 64.3 8.3 95 56-162 54-149 (469)
44 PRK10340 ebgA cryptic beta-D-g 95.2 0.085 1.8E-06 67.5 10.6 95 477-580 109-207 (1021)
45 COG3867 Arabinogalactan endo-1 94.9 0.12 2.5E-06 56.2 9.1 113 57-186 64-183 (403)
46 PRK09525 lacZ beta-D-galactosi 94.6 0.16 3.5E-06 65.0 10.8 95 476-579 119-218 (1027)
47 PF14871 GHL6: Hypothetical gl 93.9 0.3 6.6E-06 47.6 8.7 98 60-162 4-123 (132)
48 COG2723 BglB Beta-glucosidase/ 93.9 0.063 1.4E-06 62.1 4.6 101 55-163 58-161 (460)
49 PF01229 Glyco_hydro_39: Glyco 92.8 0.48 1E-05 55.9 9.8 141 45-207 28-188 (486)
50 COG3934 Endo-beta-mannanase [C 92.7 0.086 1.9E-06 60.5 3.4 158 33-208 3-169 (587)
51 PRK09936 hypothetical protein; 90.7 0.44 9.5E-06 52.1 5.9 58 51-114 33-91 (296)
52 PF02837 Glyco_hydro_2_N: Glyc 90.6 0.31 6.6E-06 48.5 4.4 57 627-713 75-135 (167)
53 smart00642 Aamy Alpha-amylase 90.3 0.67 1.5E-05 46.9 6.5 61 57-117 20-92 (166)
54 PF02638 DUF187: Glycosyl hydr 90.2 1.1 2.3E-05 50.0 8.6 118 54-182 17-162 (311)
55 TIGR00542 hxl6Piso_put hexulos 89.6 4.3 9.4E-05 43.9 12.6 98 55-178 15-113 (279)
56 TIGR01515 branching_enzym alph 89.1 4.4 9.6E-05 49.4 13.4 56 60-115 160-226 (613)
57 COG1649 Uncharacterized protei 88.7 3 6.6E-05 48.1 10.9 123 54-185 62-210 (418)
58 PF11875 DUF3395: Domain of un 88.4 0.63 1.4E-05 46.5 4.7 64 778-843 55-133 (151)
59 PRK05402 glycogen branching en 86.5 6 0.00013 49.2 12.6 53 63-115 273-335 (726)
60 PF02055 Glyco_hydro_30: O-Gly 86.2 3.4 7.3E-05 49.1 9.8 333 39-401 74-490 (496)
61 PRK09441 cytoplasmic alpha-amy 85.4 1.2 2.6E-05 52.5 5.6 68 48-115 7-101 (479)
62 PRK13210 putative L-xylulose 5 83.8 8 0.00017 41.7 10.7 131 56-213 16-149 (284)
63 PF05913 DUF871: Bacterial pro 83.4 1.6 3.5E-05 49.6 5.2 70 44-119 2-71 (357)
64 PRK01060 endonuclease IV; Prov 83.1 15 0.00032 39.7 12.5 93 58-179 14-109 (281)
65 PRK12568 glycogen branching en 83.1 18 0.00038 45.0 14.2 55 61-117 275-341 (730)
66 smart00812 Alpha_L_fucos Alpha 82.9 73 0.0016 36.7 18.4 241 49-342 77-333 (384)
67 PRK14706 glycogen branching en 82.7 16 0.00034 44.9 13.6 53 63-115 175-237 (639)
68 KOG2230 Predicted beta-mannosi 82.0 4.2 9.1E-05 48.0 7.8 113 31-183 327-444 (867)
69 PLN02447 1,4-alpha-glucan-bran 80.8 2.5 5.4E-05 52.3 5.9 59 56-115 251-320 (758)
70 cd00019 AP2Ec AP endonuclease 80.6 12 0.00027 40.3 10.7 54 56-113 10-64 (279)
71 PRK14705 glycogen branching en 79.5 28 0.0006 45.8 14.7 54 62-115 772-835 (1224)
72 PF01261 AP_endonuc_2: Xylose 79.4 3.3 7.1E-05 41.9 5.4 123 62-212 1-127 (213)
73 TIGR03234 OH-pyruv-isom hydrox 77.4 23 0.00049 37.7 11.3 43 57-113 15-57 (254)
74 PF00128 Alpha-amylase: Alpha 76.3 2.5 5.5E-05 45.3 3.8 57 59-115 7-72 (316)
75 PRK09856 fructoselysine 3-epim 76.1 28 0.0006 37.4 11.7 52 57-113 14-65 (275)
76 TIGR02402 trehalose_TreZ malto 76.0 4.5 9.9E-05 48.5 6.1 56 60-115 115-180 (542)
77 PLN00196 alpha-amylase; Provis 74.8 10 0.00022 44.3 8.3 57 59-115 47-112 (428)
78 PRK13209 L-xylulose 5-phosphat 74.8 34 0.00075 36.9 12.1 125 57-213 22-154 (283)
79 cd06593 GH31_xylosidase_YicI Y 74.8 5.6 0.00012 44.0 6.0 67 54-120 22-91 (308)
80 PF13200 DUF4015: Putative gly 73.0 11 0.00023 42.3 7.6 110 55-165 12-136 (316)
81 PF03659 Glyco_hydro_71: Glyco 73.0 13 0.00028 42.8 8.5 53 54-115 15-67 (386)
82 PF02679 ComA: (2R)-phospho-3- 72.9 5.3 0.00011 43.1 5.0 52 55-116 83-134 (244)
83 TIGR02631 xylA_Arthro xylose i 72.8 44 0.00094 38.5 12.7 91 54-163 30-125 (382)
84 PF14307 Glyco_tran_WbsX: Glyc 71.7 34 0.00073 38.7 11.4 134 54-217 56-195 (345)
85 TIGR02104 pulA_typeI pullulana 70.1 7 0.00015 47.6 5.8 56 60-115 168-249 (605)
86 PLN02960 alpha-amylase 69.9 8.5 0.00018 48.4 6.4 56 60-115 421-486 (897)
87 PRK09505 malS alpha-amylase; R 69.4 8.3 0.00018 47.6 6.3 58 58-115 232-312 (683)
88 PRK12313 glycogen branching en 68.8 8.6 0.00019 47.1 6.3 54 62-115 177-240 (633)
89 COG3623 SgaU Putative L-xylulo 68.7 62 0.0013 34.8 11.5 24 55-78 17-40 (287)
90 TIGR02403 trehalose_treC alpha 67.8 7.6 0.00017 46.6 5.5 57 57-115 28-95 (543)
91 PF02065 Melibiase: Melibiase; 67.1 30 0.00065 40.0 9.8 113 48-160 50-180 (394)
92 PRK09989 hypothetical protein; 65.5 59 0.0013 34.7 11.2 43 57-113 16-58 (258)
93 PRK10933 trehalose-6-phosphate 64.7 12 0.00027 45.0 6.4 55 58-115 35-101 (551)
94 PRK10785 maltodextrin glucosid 64.7 12 0.00027 45.4 6.4 57 59-115 182-246 (598)
95 TIGR02456 treS_nterm trehalose 64.4 13 0.00028 44.7 6.4 58 57-114 29-95 (539)
96 cd06589 GH31 The enzymes of gl 64.1 20 0.00044 38.8 7.4 65 54-119 22-90 (265)
97 cd04908 ACT_Bt0572_1 N-termina 64.0 22 0.00048 29.7 6.1 55 55-113 12-66 (66)
98 PF11324 DUF3126: Protein of u 63.7 15 0.00032 31.4 4.8 24 506-529 25-48 (63)
99 cd06592 GH31_glucosidase_KIAA1 63.0 17 0.00036 40.4 6.6 68 51-121 25-96 (303)
100 TIGR00677 fadh2_euk methylenet 62.8 23 0.00049 39.1 7.5 108 42-163 130-250 (281)
101 PRK09997 hydroxypyruvate isome 62.4 74 0.0016 34.0 11.3 49 48-113 10-58 (258)
102 COG3589 Uncharacterized conser 62.4 16 0.00034 41.0 6.1 73 43-122 3-76 (360)
103 TIGR01531 glyc_debranch glycog 62.1 26 0.00057 46.2 8.8 113 33-151 104-236 (1464)
104 smart00518 AP2Ec AP endonuclea 61.7 54 0.0012 35.2 10.1 92 58-179 12-104 (273)
105 PF13199 Glyco_hydro_66: Glyco 61.5 13 0.00028 44.7 5.7 79 56-134 118-211 (559)
106 PF14683 CBM-like: Polysacchar 61.1 7.1 0.00015 39.7 3.0 63 643-718 91-153 (167)
107 PF14587 Glyco_hydr_30_2: O-Gl 60.5 42 0.00092 38.5 9.2 121 84-220 93-227 (384)
108 cd06591 GH31_xylosidase_XylS X 60.3 15 0.00033 41.0 5.7 71 48-119 13-90 (319)
109 KOG0626 Beta-glucosidase, lact 60.2 15 0.00032 43.6 5.7 113 57-179 92-208 (524)
110 COG0296 GlgB 1,4-alpha-glucan 60.1 15 0.00033 44.7 5.9 58 55-114 164-233 (628)
111 TIGR03849 arch_ComA phosphosul 59.6 16 0.00034 39.3 5.4 53 55-117 70-122 (237)
112 PF07172 GRP: Glycine rich pro 59.5 6.2 0.00014 36.5 2.0 17 1-17 1-17 (95)
113 PRK13398 3-deoxy-7-phosphohept 59.3 27 0.00058 38.2 7.2 74 34-115 21-98 (266)
114 cd06602 GH31_MGAM_SI_GAA This 57.5 18 0.00039 40.8 5.7 74 48-122 13-93 (339)
115 cd06598 GH31_transferase_CtsZ 57.3 19 0.00042 40.1 5.9 67 54-120 22-95 (317)
116 PF08531 Bac_rhamnosid_N: Alph 57.3 31 0.00068 35.0 6.9 91 500-594 6-112 (172)
117 PF06832 BiPBP_C: Penicillin-B 56.2 21 0.00045 32.0 4.9 50 500-557 34-84 (89)
118 KOG0718 Molecular chaperone (D 54.7 17 0.00037 42.3 4.9 17 826-842 502-518 (546)
119 PF01791 DeoC: DeoC/LacD famil 54.6 5 0.00011 42.6 0.7 53 59-114 79-131 (236)
120 cd06603 GH31_GANC_GANAB_alpha 53.9 22 0.00047 40.1 5.6 74 48-122 13-91 (339)
121 PLN02361 alpha-amylase 53.6 27 0.00058 40.5 6.4 57 59-115 32-96 (401)
122 cd06600 GH31_MGAM-like This fa 52.9 23 0.0005 39.5 5.6 72 48-120 13-89 (317)
123 KOG4729 Galactoside-binding le 51.5 18 0.00038 39.2 4.1 85 758-844 139-231 (265)
124 KOG0259 Tyrosine aminotransfer 50.3 20 0.00043 41.0 4.4 94 17-114 143-238 (447)
125 TIGR00676 fadh2 5,10-methylene 50.1 56 0.0012 35.7 7.9 108 41-163 125-246 (272)
126 cd06599 GH31_glycosidase_Aec37 50.1 34 0.00073 38.2 6.3 65 56-120 29-98 (317)
127 PRK14510 putative bifunctional 49.9 23 0.00051 46.7 5.7 56 60-115 191-267 (1221)
128 PF01261 AP_endonuc_2: Xylose 49.8 86 0.0019 31.4 8.8 103 57-187 28-137 (213)
129 PRK14511 maltooligosyl trehalo 49.6 31 0.00067 43.7 6.4 60 54-117 18-91 (879)
130 cd06601 GH31_lyase_GLase GLase 48.9 86 0.0019 35.4 9.3 72 48-120 13-89 (332)
131 COG1306 Uncharacterized conser 48.7 36 0.00078 37.7 5.9 59 54-115 75-144 (400)
132 TIGR02401 trehalose_TreY malto 48.5 34 0.00073 43.1 6.5 63 54-116 14-86 (825)
133 cd06604 GH31_glucosidase_II_Ma 48.4 31 0.00068 38.8 5.8 72 48-120 13-89 (339)
134 TIGR02100 glgX_debranch glycog 48.3 25 0.00054 43.6 5.4 55 61-115 189-265 (688)
135 cd06595 GH31_xylosidase_XylS-l 48.2 37 0.0008 37.4 6.2 64 54-117 23-96 (292)
136 KOG0496 Beta-galactosidase [Ca 47.2 4.6 0.0001 48.6 -1.1 77 735-826 313-389 (649)
137 PRK00042 tpiA triosephosphate 46.5 35 0.00075 37.0 5.5 49 62-116 79-127 (250)
138 PF08308 PEGA: PEGA domain; I 46.4 21 0.00045 30.4 3.1 47 501-559 3-49 (71)
139 PF14307 Glyco_tran_WbsX: Glyc 46.4 1.5E+02 0.0034 33.4 10.9 44 30-75 150-194 (345)
140 PRK14565 triosephosphate isome 46.1 74 0.0016 34.3 7.8 86 62-158 78-186 (237)
141 PRK14507 putative bifunctional 45.9 36 0.00079 46.0 6.5 59 54-116 756-828 (1693)
142 PF01055 Glyco_hydro_31: Glyco 45.9 27 0.00058 40.5 4.9 70 54-124 41-112 (441)
143 TIGR02102 pullulan_Gpos pullul 45.4 33 0.00071 44.7 5.9 21 95-115 555-575 (1111)
144 PF10731 Anophelin: Thrombin i 45.2 18 0.00039 30.5 2.3 47 1-49 1-51 (65)
145 cd06565 GH20_GcnA-like Glycosy 44.1 1E+02 0.0022 34.2 8.9 60 54-116 15-81 (301)
146 PRK03705 glycogen debranching 43.9 35 0.00077 42.1 5.7 55 61-115 184-262 (658)
147 cd00311 TIM Triosephosphate is 43.7 42 0.00091 36.2 5.6 49 62-116 77-125 (242)
148 PRK12677 xylose isomerase; Pro 43.7 2.1E+02 0.0044 33.1 11.5 89 57-163 32-124 (384)
149 PRK14582 pgaB outer membrane N 43.1 1.2E+02 0.0026 37.6 10.0 109 57-184 335-468 (671)
150 PRK08673 3-deoxy-7-phosphohept 39.2 69 0.0015 36.3 6.6 76 33-115 86-164 (335)
151 cd06564 GH20_DspB_LnbB-like Gl 39.0 81 0.0018 35.3 7.2 62 49-115 12-102 (326)
152 KOG2024 Beta-Glucuronidase GUS 38.8 52 0.0011 35.9 5.2 55 465-520 73-130 (297)
153 cd06568 GH20_SpHex_like A subg 38.8 55 0.0012 36.8 5.8 74 32-115 4-95 (329)
154 TIGR00419 tim triosephosphate 38.2 60 0.0013 34.2 5.6 44 62-115 74-117 (205)
155 PF02228 Gag_p19: Major core p 38.2 13 0.00029 32.9 0.6 38 54-108 20-57 (92)
156 PRK09267 flavodoxin FldA; Vali 37.6 1.6E+02 0.0036 29.2 8.5 74 36-112 44-117 (169)
157 TIGR00433 bioB biotin syntheta 37.4 48 0.001 36.1 5.0 51 59-112 123-175 (296)
158 COG3915 Uncharacterized protei 37.3 1.5E+02 0.0033 29.3 7.5 47 61-113 39-87 (155)
159 smart00481 POLIIIAc DNA polyme 36.8 94 0.002 26.0 5.6 45 57-114 16-60 (67)
160 KOG3833 Uncharacterized conser 36.6 34 0.00074 38.1 3.5 53 57-115 444-499 (505)
161 PRK08645 bifunctional homocyst 36.0 1E+02 0.0022 37.8 7.9 110 38-163 460-578 (612)
162 cd06418 GH25_BacA-like BacA is 35.8 1.3E+02 0.0028 31.8 7.7 90 53-164 49-139 (212)
163 PRK09432 metF 5,10-methylenete 35.5 82 0.0018 35.0 6.4 87 61-163 168-265 (296)
164 cd06563 GH20_chitobiase-like T 34.8 1.4E+02 0.003 34.0 8.2 60 53-115 15-106 (357)
165 cd06597 GH31_transferase_CtsY 34.7 73 0.0016 36.0 6.0 73 48-120 13-110 (340)
166 COG0366 AmyA Glycosidases [Car 34.7 47 0.001 38.6 4.6 55 60-114 33-96 (505)
167 PF08924 DUF1906: Domain of un 34.6 1.1E+02 0.0023 30.1 6.4 89 54-164 36-127 (136)
168 cd02742 GH20_hexosaminidase Be 34.3 1.1E+02 0.0023 34.0 7.1 59 54-115 14-92 (303)
169 PF12876 Cellulase-like: Sugar 34.2 49 0.0011 29.6 3.7 47 170-216 6-61 (88)
170 cd06562 GH20_HexA_HexB-like Be 34.1 1.7E+02 0.0037 33.1 8.9 74 32-115 4-90 (348)
171 PLN02429 triosephosphate isome 33.9 71 0.0015 35.9 5.5 45 62-116 140-188 (315)
172 cd06416 GH25_Lys1-like Lys-1 i 33.3 71 0.0015 32.8 5.2 88 45-135 55-157 (196)
173 cd06547 GH85_ENGase Endo-beta- 31.8 61 0.0013 36.7 4.7 111 71-216 31-147 (339)
174 KOG1065 Maltase glucoamylase a 31.7 72 0.0016 39.9 5.5 62 55-121 310-377 (805)
175 TIGR02103 pullul_strch alpha-1 31.6 71 0.0015 40.9 5.7 21 95-115 404-424 (898)
176 PLN02561 triosephosphate isome 31.5 84 0.0018 34.2 5.5 49 62-116 81-129 (253)
177 PRK15492 triosephosphate isome 31.5 85 0.0018 34.3 5.6 49 62-116 87-135 (260)
178 PLN02877 alpha-amylase/limit d 30.7 82 0.0018 40.5 6.0 21 95-115 466-486 (970)
179 PTZ00333 triosephosphate isome 30.4 93 0.002 33.9 5.6 49 62-116 82-130 (255)
180 TIGR00587 nfo apurinic endonuc 30.2 3E+02 0.0065 29.9 9.6 83 59-163 14-98 (274)
181 COG1523 PulA Type II secretory 30.2 71 0.0015 39.7 5.2 54 62-115 206-285 (697)
182 COG1735 Php Predicted metal-de 30.1 2.2E+02 0.0048 31.9 8.4 118 60-217 52-170 (316)
183 PRK10076 pyruvate formate lyas 29.9 2.1E+02 0.0045 30.3 8.0 127 55-213 53-209 (213)
184 PRK10426 alpha-glucosidase; Pr 29.5 3.5E+02 0.0075 33.5 11.0 64 57-120 222-294 (635)
185 PRK09856 fructoselysine 3-epim 29.4 60 0.0013 34.8 4.1 55 57-115 91-149 (275)
186 cd01299 Met_dep_hydrolase_A Me 29.2 93 0.002 34.4 5.6 61 54-115 118-180 (342)
187 PLN02784 alpha-amylase 29.1 1.1E+02 0.0023 38.9 6.5 57 59-115 524-588 (894)
188 PRK13209 L-xylulose 5-phosphat 29.0 2.2E+02 0.0048 30.6 8.4 59 53-113 54-117 (283)
189 PRK14567 triosephosphate isome 28.9 1E+02 0.0022 33.6 5.6 49 62-116 78-126 (253)
190 PRK14566 triosephosphate isome 28.8 1E+02 0.0022 33.8 5.5 49 62-116 88-136 (260)
191 cd06570 GH20_chitobiase-like_1 28.5 1E+02 0.0022 34.4 5.8 63 53-115 15-88 (311)
192 KOG1412 Aspartate aminotransfe 28.2 2.1E+02 0.0045 32.3 7.7 49 54-111 131-179 (410)
193 PRK12331 oxaloacetate decarbox 28.0 1.1E+02 0.0024 36.1 6.1 55 48-114 88-142 (448)
194 COG0149 TpiA Triosephosphate i 27.6 1.1E+02 0.0023 33.4 5.5 49 62-116 81-129 (251)
195 PLN02389 biotin synthase 27.6 74 0.0016 36.6 4.5 53 57-112 176-230 (379)
196 PLN02763 hydrolase, hydrolyzin 27.3 1.3E+02 0.0028 38.9 6.8 74 48-122 190-268 (978)
197 PF02606 LpxK: Tetraacyldisacc 27.1 1.1E+02 0.0024 34.5 5.7 58 35-108 224-281 (326)
198 cd08560 GDPD_EcGlpQ_like_1 Gly 27.1 1.9E+02 0.0042 33.0 7.7 53 57-115 246-298 (356)
199 PF00728 Glyco_hydro_20: Glyco 27.0 80 0.0017 35.2 4.6 59 54-115 16-93 (351)
200 PF14701 hDGE_amylase: glucano 26.9 1.9E+02 0.0042 33.8 7.7 97 49-151 13-128 (423)
201 cd06545 GH18_3CO4_chitinase Th 26.8 2.3E+02 0.0049 30.3 7.9 96 86-210 36-132 (253)
202 KOG3625 Alpha amylase [Carbohy 26.7 52 0.0011 41.5 3.2 76 54-138 140-235 (1521)
203 TIGR02455 TreS_stutzeri trehal 26.3 1.4E+02 0.0031 36.7 6.7 75 54-132 76-175 (688)
204 PF04914 DltD_C: DltD C-termin 24.9 57 0.0012 31.9 2.6 27 96-123 37-63 (130)
205 cd04882 ACT_Bt0572_2 C-termina 24.8 1.4E+02 0.003 24.1 4.6 55 55-111 10-64 (65)
206 PRK10658 putative alpha-glucos 24.8 1.8E+02 0.004 36.0 7.5 65 55-121 282-351 (665)
207 PLN02229 alpha-galactosidase 24.7 1.4E+02 0.0029 35.1 5.9 73 47-121 71-156 (427)
208 COG1891 Uncharacterized protei 24.5 25 0.00053 36.1 -0.0 65 42-114 117-186 (235)
209 smart00854 PGA_cap Bacterial c 23.9 7.4E+02 0.016 26.1 11.1 45 59-112 63-107 (239)
210 PF08306 Glyco_hydro_98M: Glyc 23.9 53 0.0012 36.7 2.4 90 42-156 104-201 (324)
211 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.7 1.6E+02 0.0035 32.2 6.1 49 53-113 88-136 (275)
212 PRK13210 putative L-xylulose 5 23.6 96 0.0021 33.3 4.3 59 56-115 94-153 (284)
213 TIGR03700 mena_SCO4494 putativ 23.3 62 0.0013 36.6 2.9 51 58-111 149-204 (351)
214 PRK07094 biotin synthase; Prov 23.1 71 0.0015 35.4 3.2 50 59-111 129-181 (323)
215 PF07755 DUF1611: Protein of u 23.0 58 0.0013 36.4 2.5 116 40-220 34-151 (301)
216 PF07691 PA14: PA14 domain; I 22.8 4.6E+02 0.0099 24.8 8.5 71 478-556 47-123 (145)
217 PTZ00372 endonuclease 4-like p 22.8 3.9E+02 0.0084 31.3 9.1 78 60-163 145-228 (413)
218 PRK09997 hydroxypyruvate isome 22.7 97 0.0021 33.1 4.1 59 56-115 85-144 (258)
219 cd06594 GH31_glucosidase_YihQ 22.6 2E+02 0.0044 32.1 6.8 67 54-120 21-96 (317)
220 PRK06703 flavodoxin; Provision 22.4 3.3E+02 0.0072 26.4 7.5 103 36-163 46-148 (151)
221 COG1663 LpxK Tetraacyldisaccha 22.4 1.3E+02 0.0028 34.1 5.0 58 36-109 231-288 (336)
222 PF00121 TIM: Triosephosphate 22.3 59 0.0013 35.1 2.3 49 62-116 77-125 (244)
223 PF13380 CoA_binding_2: CoA bi 22.0 1.3E+02 0.0027 28.5 4.3 44 53-112 63-106 (116)
224 COG0156 BioF 7-keto-8-aminopel 21.5 1.1E+02 0.0025 35.3 4.5 69 34-114 135-207 (388)
225 TIGR03551 F420_cofH 7,8-dideme 21.3 74 0.0016 35.8 3.0 49 59-111 141-195 (343)
226 KOG0470 1,4-alpha-glucan branc 21.2 92 0.002 38.5 3.8 57 59-115 258-331 (757)
227 TIGR01698 PUNP purine nucleoti 21.2 1.3E+02 0.0028 32.5 4.6 41 35-75 47-88 (237)
228 PRK14040 oxaloacetate decarbox 21.1 1.4E+02 0.0029 36.6 5.3 53 48-112 89-141 (593)
229 PRK12858 tagatose 1,6-diphosph 20.9 1.1E+02 0.0025 34.7 4.3 66 47-115 98-163 (340)
230 cd06569 GH20_Sm-chitobiase-lik 20.8 1.8E+02 0.0038 34.4 6.0 73 30-115 6-117 (445)
231 PRK10966 exonuclease subunit S 20.8 5.1E+02 0.011 30.1 9.7 64 40-115 41-108 (407)
232 PF08531 Bac_rhamnosid_N: Alph 20.7 92 0.002 31.5 3.2 23 638-660 7-29 (172)
233 PF10566 Glyco_hydro_97: Glyco 20.6 2.2E+02 0.0047 31.5 6.2 60 54-114 30-92 (273)
234 cd00537 MTHFR Methylenetetrahy 20.6 2.4E+02 0.0052 30.6 6.6 108 42-163 129-249 (274)
235 KOG4039 Serine/threonine kinas 20.4 1.1E+02 0.0023 31.9 3.5 81 49-134 102-184 (238)
236 PF03102 NeuB: NeuB family; I 20.1 1E+02 0.0022 33.3 3.5 65 52-116 52-121 (241)
237 cd06415 GH25_Cpl1-like Cpl-1 l 20.0 3.5E+02 0.0076 27.8 7.4 43 95-137 108-157 (196)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=5.7e-218 Score=1890.66 Aligned_cols=809 Identities=59% Similarity=1.085 Sum_probs=744.7
Q ss_pred hhccCCeeEEEccceEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHH
Q 003147 19 ATTSFGANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (844)
Q Consensus 19 ~~~~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 98 (844)
+.-....+|+||+++|+|||+|++|+||+|||||+||++|+|||+||||+|||||+||||||+|||+||+|||+|++||+
T Consensus 22 ~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~ 101 (840)
T PLN03059 22 WVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLV 101 (840)
T ss_pred hhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHH
Confidence 34446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEec
Q 003147 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (844)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (844)
+||++|+|+||+|||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++++++++++++||||||+
T Consensus 102 ~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImv 181 (840)
T PLN03059 102 KFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILS 181 (840)
T ss_pred HHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhcCCCcceEeccCCCCCCccccCCCCcccCccCCCCCCCCeeeeecccccc
Q 003147 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYCDQFTPNSNNKPKMWTENWSGWF 258 (844)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~~~~~~~~~p~~P~~~~E~~~GWf 258 (844)
|||||||++...++.+|++||+||+++++++|++|||+||++.++++++++|+||.+|+.|.+.++.+|+|+||||+|||
T Consensus 182 QIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf 261 (840)
T PLN03059 182 QIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWY 261 (840)
T ss_pred EecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhH
Confidence 99999998765666789999999999999999999999999988888999999999999898877889999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhHHHHHHHHHH
Q 003147 259 LSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKA 338 (844)
Q Consensus 259 ~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~ 338 (844)
++||++++.++++|++.+++++|++|+|++|||||||||||||||||++++|||||||||+|+|++++|||.+||++|++
T Consensus 262 ~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~ 341 (840)
T PLN03059 262 TEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKA 341 (840)
T ss_pred hhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999965799999999999
Q ss_pred HHhhhhcccCCCCCCCCCCCCcceeEeecCCCceeeeeeccCCCcceEEEecCeeeecCCcceeecCCCCceeeccceec
Q 003147 339 IKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKIN 418 (844)
Q Consensus 339 ~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~~~t~~v~ 418 (844)
++.+++.++..+|....+++.+++.+|...+ .|++|+.|.+.+.+++|+|+|++|.||+|||+|||||+.++|+|+++.
T Consensus 342 ~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~ 420 (840)
T PLN03059 342 IKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLG 420 (840)
T ss_pred HHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccc
Confidence 9888877776777777789999999998666 799999999988999999999999999999999999999999999998
Q ss_pred cccccccccccccccccccccccCCCcccccccc-ccCCCCCCCCCcchhhhcCCCCCcceEEEEEEeecCCCCccccCC
Q 003147 419 SVTLVPSFSRQSLQVAADSSDAIGSGWSYINEPV-GISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDG 497 (844)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~Eql~~t~d~~gYl~Y~T~i~~~~~~~~~~~g 497 (844)
.|++.+.+.+. ...+.|+++.|++ +...+.+++...++||+++|+|.+||+||+|+|....++...+++
T Consensus 421 ~q~~~~~~~~~----------~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~ 490 (840)
T PLN03059 421 AQSSQMKMNPV----------GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTG 490 (840)
T ss_pred cccceeecccc----------cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccC
Confidence 88654422111 2456899999994 444556777788899999999999999999999987766444677
Q ss_pred CceeEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCccEEEEEEeecCccccCCCCcccCcCcccceEec
Q 003147 498 SKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLK 577 (844)
Q Consensus 498 ~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~iLven~Gr~NyG~~~~~~~KGI~g~V~l~ 577 (844)
.+++|+|.+++|++||||||+++|+++++..+..++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|+
T Consensus 491 ~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~ 570 (840)
T PLN03059 491 QYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLK 570 (840)
T ss_pred CCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEe
Confidence 88999999999999999999999999998777788898888899999999999999999999999999999999999999
Q ss_pred cCCCCccccCccCCcEEEccCCCccccCCC---CCCCCcCCCCCCCCCCCeE----EEEcCCCCCCeEEeeCCCceEEEE
Q 003147 578 GSGNGTNIDLSSQQWTYQTGLKGEELNFPS---GSSTQWDSKSTLPKLQPLT----TFDAPAGSEPVAIDFTGMGKGEAW 650 (844)
Q Consensus 578 g~~~g~~~~L~~~~W~~~~~l~ge~~~l~~---~~~~~w~~~~~~~~~~p~~----~f~~p~~~d~t~Ld~~g~gKG~vw 650 (844)
|...| +++|+++.|.|+++|+||.++|.. ...++|.+.+..+..+|++ +|++|++.|||||||+|||||+||
T Consensus 571 g~~~g-~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aW 649 (840)
T PLN03059 571 GLNEG-TRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIW 649 (840)
T ss_pred cccCC-ceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEE
Confidence 98776 789999999999999999998733 4578897664444456543 999999999999999999999999
Q ss_pred ECCeeccccccccccCCCCCCCCCCccCCcCccccccCCCCccceeeecCccccccCCceEEEEEeeCCCCccEEEeeee
Q 003147 651 VNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQ 730 (844)
Q Consensus 651 VNG~nlGRYW~~~i~~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~ivvfE~~~~~p~~i~~~~~~ 730 (844)
|||+||||||+. .+..+|| +.|||||+|+++||+|||+||||||||||++|||+|+|+||||||+|++|..|++.++.
T Consensus 650 VNG~nIGRYW~~-~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~ 727 (840)
T PLN03059 650 INGQSIGRHWPA-YTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRT 727 (840)
T ss_pred ECCccccccccc-ccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEee
Confidence 999999999986 4556799 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCcccccccCcCC-CCCCCceEEecCCCCceEEEEeeeecCCCCCCCCCCCCCcccCCchHHHHHH
Q 003147 731 LGSSLCSHVTDSHPLPVDMWGSDSKIQ-RKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQ 809 (844)
Q Consensus 731 ~~~~lC~~~~~~~~~~~~~~~~~~~~~-~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~ 809 (844)
+.+ +|++++|+|| ++++|++..... .-....++|+|+ .|++|++|.+|+|||+.++|+++++++|++++|+++|++
T Consensus 728 ~~~-~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~-~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~k 804 (840)
T PLN03059 728 TDS-VCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLWCP-PGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFER 804 (840)
T ss_pred cCc-ccccccccCC-ccccccccccccccccCCcEEEECC-CCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHH
Confidence 999 9999999995 699999965543 445678999999 999997799999999999999999999999999999999
Q ss_pred HccCCCceEEeecCCcCC-CCCCCCcceEEEEEEeC
Q 003147 810 ACVGSKSCSIGVSVNTFG-DPCKGVMKSLAVEASCT 844 (844)
Q Consensus 810 ~C~Gk~~C~v~a~~~~Fg-DPCpgt~KYL~V~Y~C~ 844 (844)
+|+||++|+|.+++++|| ||||||+|||+|+|+|+
T Consensus 805 aC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 805 NCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred HCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 999999999999999996 99999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-153 Score=1293.10 Aligned_cols=623 Identities=60% Similarity=1.078 Sum_probs=570.4
Q ss_pred CeeEEEccceEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHH
Q 003147 24 GANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKL 103 (844)
Q Consensus 24 ~~~v~~d~~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~l 103 (844)
++.|+||+++|++||+|++++||++||||++|++|+|+|+||||+|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccc
Q 003147 104 VAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (844)
Q Consensus 104 a~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE 183 (844)
|++.||+|+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHhhcCCCcceEeccCCCCCCccccCCCCccc-CccC-CCCCCCCeeeeeccccccccc
Q 003147 184 YGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYC-DQFT-PNSNNKPKMWTENWSGWFLSF 261 (844)
Q Consensus 184 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~~-~~~~-~~~p~~P~~~~E~~~GWf~~W 261 (844)
||.+...|++..+.|++|-..|+...+.+|||+||.+.++|+.++++|||.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99876667778899999999999999999999999999999999999999999 8888 999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhHHHHHHHHHHHHh
Q 003147 262 GGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKL 341 (844)
Q Consensus 262 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~ 341 (844)
|++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||| |..++|||.++|.+|..+..
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 89999999999999 99999999999999999998
Q ss_pred hhhcccCCCCCCCCCCCCcceeEeecCCCceeeeeeccCCCcceEEEecCeeeecCCcceeecCCCCceeeccceecccc
Q 003147 342 CEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVT 421 (844)
Q Consensus 342 ~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~~~t~~v~~~~ 421 (844)
+++.+..+++....+ ....+.|+.|+.|.+......+.|++..|.+|+|+|+|+++|++++|+|+++..+
T Consensus 332 ~ep~lv~gd~~~~ky---------g~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKY---------GNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccc---------cchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 888776666554443 3334459999999998888999999999999999999999999999999866432
Q ss_pred ccccccccccccccccccccCCCccccccccccCCCCCCCCCcchhhhcCCCCCcceEEEEEEeecCCCCccccCCCcee
Q 003147 422 LVPSFSRQSLQVAADSSDAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV 501 (844)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~gYl~Y~T~i~~~~~~~~~~~g~~~~ 501 (844)
|....||++ +|..++ .+||++|+|.++.+.+++ ..
T Consensus 402 -----------------------~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~ 436 (649)
T KOG0496|consen 402 -----------------------WISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TS 436 (649)
T ss_pred -----------------------cccccCCCc------------cccccC---cceEEEEEEeeccccCCC-------ce
Confidence 444445444 666655 688999999998766652 46
Q ss_pred EEeC-CcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCccEEEEEEeecCccccCCCCcccCcCcccceEeccCC
Q 003147 502 LHVQ-SLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSG 580 (844)
Q Consensus 502 L~v~-~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~iLven~Gr~NyG~~~~~~~KGI~g~V~l~g~~ 580 (844)
|+|. +++|++||||||+++|++++......+.+..++.+..|.|+|+|||||+||+||| +++++.|||+|+|+|+|.
T Consensus 437 ~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~- 514 (649)
T KOG0496|consen 437 LKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL- 514 (649)
T ss_pred EeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee-
Confidence 8888 9999999999999999999987777888999999999999999999999999999 899999999999999996
Q ss_pred CCccccCccCCcEEEccCCCccccCC---CCCCCCcCCCCCCCCCCCeE---EEEcCCCCCCeEEeeCCCceEEEEECCe
Q 003147 581 NGTNIDLSSQQWTYQTGLKGEELNFP---SGSSTQWDSKSTLPKLQPLT---TFDAPAGSEPVAIDFTGMGKGEAWVNGQ 654 (844)
Q Consensus 581 ~g~~~~L~~~~W~~~~~l~ge~~~l~---~~~~~~w~~~~~~~~~~p~~---~f~~p~~~d~t~Ld~~g~gKG~vwVNG~ 654 (844)
++++++.|.++++|+||.+.+. ...+++|......+..+|++ +|++|++.+||||||.|||||+|||||+
T Consensus 515 ----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k~f~~p~g~~~t~Ldm~g~GKG~vwVNG~ 590 (649)
T KOG0496|consen 515 ----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYKTFDIPSGSEPTALDMNGWGKGQVWVNGQ 590 (649)
T ss_pred ----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEEEecCCCCCCCeEEecCCCcceEEEECCc
Confidence 4688778999999999999882 26678998776555457876 8999999999999999999999999999
Q ss_pred eccccccccccCCCCCCCCCCccCCcCccccccCCCCccceeeecCccccccCCceEEEEEeeCCCCccEEEeeeecccc
Q 003147 655 SIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQLGSS 734 (844)
Q Consensus 655 nlGRYW~~~i~~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~ivvfE~~~~~p~~i~~~~~~~~~~ 734 (844)
|||||||+ .|||++|| ||++|||++.|+||||||++++|..|+++++++..
T Consensus 591 niGRYW~~---------------------------~G~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~- 641 (649)
T KOG0496|consen 591 NIGRYWPS---------------------------FGPQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLS- 641 (649)
T ss_pred ccccccCC---------------------------CCCceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEeee-
Confidence 99999986 37966666 99999999999999999999999999999999996
Q ss_pred ccccccc
Q 003147 735 LCSHVTD 741 (844)
Q Consensus 735 lC~~~~~ 741 (844)
+|..+.|
T Consensus 642 ~~~~v~~ 648 (649)
T KOG0496|consen 642 TCAYVRE 648 (649)
T ss_pred Eeeeccc
Confidence 9998876
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.3e-89 Score=751.88 Aligned_cols=297 Identities=42% Similarity=0.802 Sum_probs=229.9
Q ss_pred eEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 33 ~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
+|+|||||++|+|||+||||+|+++|+|+|+||||+|+|||++||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccC
Q 003147 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG 192 (844)
Q Consensus 113 lrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 192 (844)
|||||||||||++||+|.||++++++++|++||.|+++|++|+++|+++++ ++|+++||||||+|||||||. +
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~----~- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGS----Y- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGC----T-
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCC----C-
Confidence 999999999999999999999999999999999999999999999999999 799999999999999999994 2
Q ss_pred cccHHHHHHHHHHHhhcCCC-cceEeccCCC--------CCCccccCCCCcccCc-----c---CCCCCCCCeeeeeccc
Q 003147 193 AAGKSYIKWAAGMALSLDTG-VPWVMCQQSD--------APDPIINTCNGFYCDQ-----F---TPNSNNKPKMWTENWS 255 (844)
Q Consensus 193 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~t~ng~~~~~-----~---~~~~p~~P~~~~E~~~ 255 (844)
.++++||+.|++++++.+++ ++.++++... .+...+.+++++.+.. | ...+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999988 6677766421 1222233343444421 1 2557889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCc----cccccCCCCCCCCCCCCchhHHH
Q 003147 256 GWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFI----STSYDYDAPLDEYGLIRQPKWGH 331 (844)
Q Consensus 256 GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~----~TSYDYdApl~E~G~~~t~Ky~~ 331 (844)
|||++||++++.+++++++..++++++.|.+ +||||||||||||+++|++.. +|||||||||+|+|++ ||||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999887654 6999999999999999 699999
Q ss_pred HHHHHHH
Q 003147 332 LKDLHKA 338 (844)
Q Consensus 332 lr~l~~~ 338 (844)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-40 Score=384.22 Aligned_cols=289 Identities=22% Similarity=0.314 Sum_probs=217.3
Q ss_pred EEEccceEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEE-ccccCccCCCCceeeecCcchHHHHHHHHH
Q 003147 27 VTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (844)
Q Consensus 27 v~~d~~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~ 105 (844)
|.+++..|++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |++||.|||++|+|||+ .+|.. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEEecCc-ccccccCCCCCCcccccCCCeeec---------cCChhhHHHHHHHHHHHHHHHhhcccccccCCce
Q 003147 106 EAGLYAHLRIGP-YVCAEWNFGGFPLWLHFIPGIQFR---------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI 175 (844)
Q Consensus 106 ~~GL~VilrpGP-YicaEw~~GG~P~WL~~~p~~~~R---------~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpI 175 (844)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++.|++++++.+.+|.++ .+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer------~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRER------LYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHH------HhccCCce
Confidence 999999999999 999999999999999876653222 35677888888755444433 36899999
Q ss_pred EeccccccccccccccCcccHHHHHHHHHHHhhc-CCCcceEecc-CCCCC-CccccCCC-----Cccc--CccCCCCCC
Q 003147 176 ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL-DTGVPWVMCQ-QSDAP-DPIINTCN-----GFYC--DQFTPNSNN 245 (844)
Q Consensus 176 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~t~n-----g~~~--~~~~~~~p~ 245 (844)
|+||++||||++.+.+..|.+.+..||++.+-.. ..+.+|=+.. ..+.. -..+.+.+ +... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999854444568889999999887421 1222221111 00000 00111111 1111 122222233
Q ss_pred C----Ceeeeecccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCeeeeeeeeeccCCCC------CCCCCC---C---
Q 003147 246 K----PKMWTENWSGWF-LSFGGAVPYRP-VEDLAFAVARFFQRGGTFQNYYMYHGGTNFD------RTSGGP---F--- 307 (844)
Q Consensus 246 ~----P~~~~E~~~GWf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~Ga~---~--- 307 (844)
+ +....|.+-+|| +.|..+.-... .+.-...+++.|..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 3 566778888999 77877655444 44445667777777766 6999999999999 777764 2
Q ss_pred ----ccccccCCCCCCCCCCC
Q 003147 308 ----ISTSYDYDAPLDEYGLI 324 (844)
Q Consensus 308 ----~~TSYDYdApl~E~G~~ 324 (844)
..|+|++++.+.+.|.+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 58999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=6.1e-21 Score=214.52 Aligned_cols=262 Identities=19% Similarity=0.273 Sum_probs=161.8
Q ss_pred ecCCCCCcccHHHHHHHHHhCCCCEEEE-ccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 003147 48 IHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG 126 (844)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G 126 (844)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||+.+ .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677899999999999999999999996 67899999999999999 799999999999999999974 57
Q ss_pred CCCccccc-CCCeee----------------ccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccccccccc
Q 003147 127 GFPLWLHF-IPGIQF----------------RTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS 189 (844)
Q Consensus 127 G~P~WL~~-~p~~~~----------------R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~ 189 (844)
..|.||.+ .|++.. ..++|.|++++++++++|+++++. ...||+|||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCc-
Confidence 79999975 576532 135789999999999999888874 45799999999998742
Q ss_pred ccC-cccHHHHHHHHHHHhhc-------CCC-------------cceEeccCC------C--------------------
Q 003147 190 AYG-AAGKSYIKWAAGMALSL-------DTG-------------VPWVMCQQS------D-------------------- 222 (844)
Q Consensus 190 ~~~-~~~~~y~~~l~~~~~~~-------g~~-------------vp~~~~~~~------~-------------------- 222 (844)
+|. .+.++|.+||+++|... |.. .|..+.... |
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 36788999999998731 211 121111000 0
Q ss_pred ---CCCccccCCC--C-----cc-------cC-----cc----------------------CCCCCCCCeeeeecccccc
Q 003147 223 ---APDPIINTCN--G-----FY-------CD-----QF----------------------TPNSNNKPKMWTENWSGWF 258 (844)
Q Consensus 223 ---~~~~~~~t~n--g-----~~-------~~-----~~----------------------~~~~p~~P~~~~E~~~GWf 258 (844)
.|. ...+.| + .+ +| .+ +...+.+|.+++|..+| -
T Consensus 223 r~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~ 300 (374)
T PF02449_consen 223 REYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-P 300 (374)
T ss_dssp HHHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--
T ss_pred HHhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-C
Confidence 000 001111 0 00 00 00 01246899999999999 5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCC-CCCchhHHHHHHHHH
Q 003147 259 LSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYG-LIRQPKWGHLKDLHK 337 (844)
Q Consensus 259 ~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G-~~~t~Ky~~lr~l~~ 337 (844)
..|+.......+..+....-.-++.|+..+.|+-+ ..--+|.-.. ..+.|+-+| .+ +++|.+++++..
T Consensus 301 ~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~ 369 (374)
T PF02449_consen 301 VNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGR 369 (374)
T ss_dssp -SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHH
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHH
Confidence 66766555556666666666678999998877755 4344553321 125788889 65 899999999987
Q ss_pred HHHh
Q 003147 338 AIKL 341 (844)
Q Consensus 338 ~~~~ 341 (844)
.|+.
T Consensus 370 ~l~~ 373 (374)
T PF02449_consen 370 ELKK 373 (374)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7653
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.80 E-value=3.3e-20 Score=163.96 Aligned_cols=76 Identities=43% Similarity=0.842 Sum_probs=61.7
Q ss_pred EecCCCCceEEEEeeeecCCC-CCCCCCC---CCCcccCCchHHHHHHHccCCCceEEeecCCcCCCCCCCCcceEEEEE
Q 003147 766 LECPNPNQVISSIKFASFGTP-LGTCGSF---SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDPCKGVMKSLAVEA 841 (844)
Q Consensus 766 L~C~~~g~~I~~I~~A~YGr~-~~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~FgDPCpgt~KYL~V~Y 841 (844)
|+|+ .|++| +|.+|+|||+ ..+|++. ...+|.+++++.+|+++|+||++|+|.+++++||||||++.|||+|+|
T Consensus 1 L~C~-~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCP-PGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFGDPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-S-TTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH--SSTTS--EEEEEE
T ss_pred CCCc-CCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccCCCCCCCCeEEEEEE
Confidence 8999 99999 5999999999 5689842 457899999999999999999999999999999999999999999999
Q ss_pred Ee
Q 003147 842 SC 843 (844)
Q Consensus 842 ~C 843 (844)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.77 E-value=5e-19 Score=183.25 Aligned_cols=86 Identities=30% Similarity=0.620 Sum_probs=79.7
Q ss_pred CCCCCCceEEecCCCCceEEEEeeeecCCC-CCCCCCC----CCCcccCCchHHHHHHHccCCCceEEeecCCcCC-CCC
Q 003147 757 QRKPGPVLSLECPNPNQVISSIKFASFGTP-LGTCGSF----SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFG-DPC 830 (844)
Q Consensus 757 ~~ce~~~~~L~C~~~g~~I~~I~~A~YGr~-~~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg-DPC 830 (844)
-+|||+.++|+|| .++||+ |++|+|||. ...|.+. -..+|..+.++.++.++||++++|.|.|+.++|| |||
T Consensus 39 ~aCdG~~i~L~CP-~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPC 116 (265)
T KOG4729|consen 39 YACDGERITLSCP-RGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPC 116 (265)
T ss_pred EeecCceEEEEcC-CCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCC
Confidence 3699999999999 999995 999999998 5789752 2579999999999999999999999999999999 999
Q ss_pred CCCcceEEEEEEeC
Q 003147 831 KGVMKSLAVEASCT 844 (844)
Q Consensus 831 pgt~KYL~V~Y~C~ 844 (844)
|||+|||+|+|.|.
T Consensus 117 PgT~KYLev~Y~Cv 130 (265)
T KOG4729|consen 117 PGTSKYLEVQYGCV 130 (265)
T ss_pred CCchhheEEEeccC
Confidence 99999999999994
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.28 E-value=9.5e-11 Score=128.09 Aligned_cols=149 Identities=21% Similarity=0.282 Sum_probs=107.0
Q ss_pred EEEccceEEECCEEeEEEEEEecCCC------CCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHH
Q 003147 27 VTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKF 100 (844)
Q Consensus 27 v~~d~~~f~ldG~~~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~f 100 (844)
|++.++.|+|||||+++.|...|... ++++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999743 47899999999999999999999 66664 2789
Q ss_pred HHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 003147 101 VKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (844)
Q Consensus 101 l~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 180 (844)
+++|.++||.|+.-+. ..+.-.|-... .......||.+.+.+.+-+++++.+.+. ...||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~N-------HPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP--------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRN-------HPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEecc--------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcC-------cCchheeec
Confidence 9999999999997642 11221222111 0124567899999888888888887764 458999999
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhcCCCcceE
Q 003147 181 ENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWV 216 (844)
Q Consensus 181 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 216 (844)
-||-. ...+++.|.+++++..-+-|..
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~ 155 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVT 155 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCcee
Confidence 99993 3567888999999877666643
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.10 E-value=8.8e-09 Score=123.33 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=110.3
Q ss_pred eeEEEccceEEECCEEeEEEEEEecCCC------CCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHH
Q 003147 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (844)
Q Consensus 25 ~~v~~d~~~f~ldG~~~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 98 (844)
.+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+|++ .|-|. -+
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4578889999999999999999998532 46788999999999999999999 46553 26
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccc-------c-CCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccc
Q 003147 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH-------F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYAS 170 (844)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~ 170 (844)
+|+++|.|+||+|+-... .-|+..|.. + .+....-..+|.+.++..+-+++++.+.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999997642 112222221 1 11111112456676666666666655544
Q ss_pred cCCceEeccccccccccccccCcccHHHHHHHHHHHhhcCCCcceE
Q 003147 171 QGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWV 216 (844)
Q Consensus 171 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 216 (844)
|...||||-|-||.... ......|++.|.+.+++..-+-|..
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt 446 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVT 446 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceE
Confidence 56689999999997532 1134577788888888877655544
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.88 E-value=3.3e-08 Score=124.37 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=118.8
Q ss_pred eeEEEccceEEECCEEeEEEEEEecCCC------CCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHH
Q 003147 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (844)
Q Consensus 25 ~~v~~d~~~f~ldG~~~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 98 (844)
.+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+|++ .|-|. -.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 3477788999999999999999988432 47889999999999999999999 35554 26
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEec
Q 003147 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (844)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (844)
+|+++|.|+||+|+-.. |..|..|.. .. +...-+++|.|.++..+=+++++.+. .|...||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~~--~~~~~~~~p~~~~~~~~~~~~mV~Rd-------rNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------VG--DISRITDDPQWEKVYVDRIVRHIHAQ-------KNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------cc--ccccccCCHHHHHHHHHHHHHHHHhC-------CCCCEEEEE
Confidence 89999999999999864 322222211 00 00112467777655444455555544 456799999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhcCCCcceEeccCCCC--CCccccCCCCcc--cCccCCCCCCCCeeeeecc
Q 003147 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDA--PDPIINTCNGFY--CDQFTPNSNNKPKMWTENW 254 (844)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~--~~~~~~t~ng~~--~~~~~~~~p~~P~~~~E~~ 254 (844)
=+-||-+. + . .++.+.+.+++..-.-| ++..+... ..+++...=+.. ...+....+++|++.+||-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~-v~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRL-VHYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCce-EEeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999762 2 2 23567777777665555 34333211 111221100000 0122233457999999994
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.87 E-value=2.4e-08 Score=106.78 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=107.3
Q ss_pred CCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccC-CCCce-eeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 37 GGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-PVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 37 dG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hE-p~~G~-~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
+|+++...+-+.|+.. +..-++.+++||++|+|+||+.|.|...+ +.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 12778999999999999999999995444 67764 66666679999999999999999987
Q ss_pred cCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccc--cC
Q 003147 115 IGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSA--YG 192 (844)
Q Consensus 115 pGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 192 (844)
+- ..|.|....... ...+...+...++++.|+.+++ +..+|++++|=||....... +.
T Consensus 82 ~h----------~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----------NAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----------ESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----------cCcccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 52 227774432111 1223334444445555655554 34579999999999864211 10
Q ss_pred ----cccHHHHHHHHHHHhhcCCCcceEe
Q 003147 193 ----AAGKSYIKWAAGMALSLDTGVPWVM 217 (844)
Q Consensus 193 ----~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (844)
..-.++++.+.+.+|+.+.+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 0113455666667777777665554
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.86 E-value=4.5e-08 Score=122.99 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=103.3
Q ss_pred eeEEEccceEEECCEEeEEEEEEecCC------CCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHH
Q 003147 25 ANVTYDHRAVVIGGKRRVLISGSIHYP------RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (844)
Q Consensus 25 ~~v~~d~~~f~ldG~~~~~~sG~~Hy~------R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 98 (844)
.+|++++..|+|||+|+++.|...|-. +++++.|+++|+.||++|+|+|++ .|-|. -.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 346778889999999999999999842 368899999999999999999999 45553 27
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEec
Q 003147 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (844)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (844)
+|+++|.|+||+|+-... . |. .|-.|. .. + .+||.|++++.+=+++++.+.+ |...||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e~-hg~~~~---~~----~-~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---ET-HGMVPM---NR----L-SDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---cc-cCCccc---cC----C-CCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 899999999999997742 1 11 111111 00 1 3578787766555555555444 56789999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhcCCCcceE
Q 003147 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWV 216 (844)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 216 (844)
=+-||-+. + ...+.+.+.+++..-.-|..
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~ 486 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQ 486 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEE
Confidence 99999762 2 12455666666655555543
No 13
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=8.2e-08 Score=116.88 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=104.0
Q ss_pred eeEEEccceEEECCEEeEEEEEEecCCC-----C-CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHH
Q 003147 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR-----S-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (844)
Q Consensus 25 ~~v~~d~~~f~ldG~~~~~~sG~~Hy~R-----~-~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 98 (844)
..|+++...|+|||||+++-|..-|.+- . ..+.-+++|++||++|+|+|+| | |-|. =+
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCC-----------CH
Confidence 4588899999999999999999999754 2 4454899999999999999999 3 7776 38
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEec
Q 003147 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (844)
Q Consensus 99 ~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (844)
.|++||.++||+||--+ ..||-. +| +|+.|++.+..=+++++++.+. ...||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~kn-------HPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRN-------HPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccC-------CCcEEEE
Confidence 99999999999999875 223322 22 7888998888888888887764 4589999
Q ss_pred cccccccccccccCcccHHHHHHHHHHH
Q 003147 179 QIENEYGNIDSAYGAAGKSYIKWAAGMA 206 (844)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 206 (844)
=+.||-|. +.....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999883 333333344554443
No 14
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.27 E-value=8.5e-07 Score=83.57 Aligned_cols=45 Identities=36% Similarity=0.674 Sum_probs=36.7
Q ss_pred CCCceEEEEECCeeccccccccccCCCCCCCCCCccCCcCccccccCCCCccceeeecCccccccCCceEEEE
Q 003147 642 TGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLF 714 (844)
Q Consensus 642 ~g~gKG~vwVNG~nlGRYW~~~i~~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~ivvf 714 (844)
....+++|||||++|||||+. +|||++++ ||..+|+.++|.|+|+
T Consensus 60 g~~~~~~vwVNG~~~G~~~~~---------------------------~g~q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYWPG---------------------------IGPQTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp STTEEEEEEETTEEEEEEETT---------------------------TECCEEEE-E-BTTBTTCEEEEEEE
T ss_pred CCceEEEEEECCEEeeeecCC---------------------------CCccEEEE-eCceeecCCCEEEEEE
Confidence 568899999999999999953 57999999 9999999975554443
No 15
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.20 E-value=9.2e-06 Score=76.58 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=58.2
Q ss_pred chhhhcCCCCCcceEEEEEEeecCCCCccccCCCcee-EEe-CCcceEEEEEECCEEEEEEeccCCCceeEEeeeec-cC
Q 003147 465 LLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV-LHV-QSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIA-LA 541 (844)
Q Consensus 465 ~~Eql~~t~d~~gYl~Y~T~i~~~~~~~~~~~g~~~~-L~v-~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~-l~ 541 (844)
+.+..+.+++.+|++|||+++.....+. .-. |.+ .+.+.+++|||||+++|..... ..++.+|..|.. ++
T Consensus 23 ~~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-~g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 23 PVLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPG-IGPQTTFSVPAGILK 95 (111)
T ss_dssp SSTCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETT-TECCEEEEE-BTTBT
T ss_pred ceeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCC-CCccEEEEeCceeec
Confidence 3566677778999999999997533221 123 444 3679999999999999998732 122345555543 45
Q ss_pred CCccEEEEEEeecCc
Q 003147 542 PGKNTFDLLSLTVGL 556 (844)
Q Consensus 542 ~g~~~L~iLven~Gr 556 (844)
.+.+.|.+|+.+||.
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 566788999999995
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.05 E-value=1.1e-05 Score=86.68 Aligned_cols=116 Identities=26% Similarity=0.397 Sum_probs=85.9
Q ss_pred cCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHH
Q 003147 79 WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKI 158 (844)
Q Consensus 79 Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l 158 (844)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 333322 533 6899987533 345677888888888
Q ss_pred HHHHhhcccccccCCceEeccccccccccc-------cccCcccHHHHHHHHHHHhhcCCCcceEecc
Q 003147 159 VDMMKQEKLYASQGGPIILSQIENEYGNID-------SAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (844)
Q Consensus 159 ~~~~~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 219 (844)
+.+++ |.|..|+|-||.-... ..+...+.+|+...-+.+|+..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 87765 5689999999964321 0111134578888888888887777777765
No 17
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.00 E-value=5.6e-05 Score=82.48 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=82.8
Q ss_pred cCCeeEEEccceEE--ECCEEeEEEEEEecCCCC-----------CcccHHHHHHHHHhCCCCEEEEccccCccCCCCce
Q 003147 22 SFGANVTYDHRAVV--IGGKRRVLISGSIHYPRS-----------TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ 88 (844)
Q Consensus 22 ~~~~~v~~d~~~f~--ldG~~~~~~sG~~Hy~R~-----------~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~ 88 (844)
+.-..|++.++.|+ .+|++|+|.|-.+.+.-. .++.|++++..||++|+|||++|-
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----------- 74 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----------- 74 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES------------
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE-----------
Confidence 34456889999999 799999999988876332 467899999999999999999972
Q ss_pred eeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCCh--hhH-HHHHHHHHHHHHHHhhc
Q 003147 89 YNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNE--PFK-AEMQRFTAKIVDMMKQE 165 (844)
Q Consensus 89 ~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~-~~v~~~~~~l~~~~~~~ 165 (844)
-+-..|-++++++.+++|+|||+-.+. |..-+-..+| .|- ...++|+ +++..++.+
T Consensus 75 --vdp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~Y 133 (314)
T PF03198_consen 75 --VDPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYF-AVIDAFAKY 133 (314)
T ss_dssp ----TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHH-HHHHHHTT-
T ss_pred --eCCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHH-HHHHHhccC
Confidence 222358899999999999999998642 2222323444 442 2223333 344555533
Q ss_pred ccccccCCceEecccccccccccccc--CcccHHHHHHHHHHHhhcCC-Ccc
Q 003147 166 KLYASQGGPIILSQIENEYGNIDSAY--GAAGKSYIKWAAGMALSLDT-GVP 214 (844)
Q Consensus 166 ~~~~~~gGpII~~QiENEyg~~~~~~--~~~~~~y~~~l~~~~~~~g~-~vp 214 (844)
.+++++=+-||--...... .+.-++..+-+|+-.++.+. .+|
T Consensus 134 -------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IP 178 (314)
T PF03198_consen 134 -------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIP 178 (314)
T ss_dssp -------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----
T ss_pred -------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3799999999976421100 11234444455555555543 344
No 18
>PLN02705 beta-amylase
Probab=97.92 E-value=2.1e-05 Score=91.03 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCC-CCceeeecCcchHHHHHHHHHHcCcEEE--EecCcccccccCCC-----
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAH--LRIGPYVCAEWNFG----- 126 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vi--lrpGPYicaEw~~G----- 126 (844)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++. |.+ --|+- +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 455688899999999999999999999998 699999996 6778999999999964 543 22333 112
Q ss_pred CCCccccc----CCCeee
Q 003147 127 GFPLWLHF----IPGIQF 140 (844)
Q Consensus 127 G~P~WL~~----~p~~~~ 140 (844)
-||.|+.+ +|+|.+
T Consensus 341 PLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred cCCHHHHHhcccCCCcee
Confidence 28999975 477643
No 19
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.91 E-value=7.2e-05 Score=74.58 Aligned_cols=99 Identities=30% Similarity=0.371 Sum_probs=70.5
Q ss_pred CCCcceEEEEEEeecCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCc-cEEEEEE
Q 003147 473 ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDLLS 551 (844)
Q Consensus 473 ~d~~gYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~-~~L~iLv 551 (844)
....|+.||++++.++... .+.+..|.+.++.+.+.|||||+++|...... ..+.+.+.-.++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999986432 34567899999999999999999999986543 345566555677787 9999999
Q ss_pred eecCccccCCCC-cccCcCcccceEec
Q 003147 552 LTVGLQNYGAFY-EKTGAGITGPVQLK 577 (844)
Q Consensus 552 en~Gr~NyG~~~-~~~~KGI~g~V~l~ 577 (844)
-+...-.+-+.+ .....||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865543331111 12468999999873
No 20
>PLN02905 beta-amylase
Probab=97.89 E-value=3.1e-05 Score=89.98 Aligned_cols=81 Identities=22% Similarity=0.443 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCC-CCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CCC
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GFP 129 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G~P 129 (844)
+.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++.+---=--|+- +-| -||
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPLP 361 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPLP 361 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 44577899999999999999999999998 799999996 77789999999999643322122322 111 289
Q ss_pred ccccc----CCCeee
Q 003147 130 LWLHF----IPGIQF 140 (844)
Q Consensus 130 ~WL~~----~p~~~~ 140 (844)
.|+.+ +|+|.+
T Consensus 362 ~WV~e~g~~nPDiff 376 (702)
T PLN02905 362 HWVAEIGRSNPDIFF 376 (702)
T ss_pred HHHHHhhhcCCCceE
Confidence 99975 577654
No 21
>PLN02801 beta-amylase
Probab=97.84 E-value=3.8e-05 Score=87.86 Aligned_cols=81 Identities=25% Similarity=0.501 Sum_probs=63.3
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-CCceeeecCcchHHHHHHHHHHcCcEEE--EecCcccccccCCC----
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAH--LRIGPYVCAEWNFG---- 126 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~Vi--lrpGPYicaEw~~G---- 126 (844)
.++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..+++++++++||++. +.. --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 699999996 6778999999999964 543 22322 111
Q ss_pred -CCCccccc----CCCeee
Q 003147 127 -GFPLWLHF----IPGIQF 140 (844)
Q Consensus 127 -G~P~WL~~----~p~~~~ 140 (844)
-||.|+.+ +|+|.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 28999975 577643
No 22
>PLN00197 beta-amylase; Provisional
Probab=97.81 E-value=5e-05 Score=87.51 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=63.8
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-CCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----C
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G 127 (844)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++.+--.=--|+- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556788999999999999999999999998 799999996 67779999999999643322122322 111 2
Q ss_pred CCccccc----CCCeee
Q 003147 128 FPLWLHF----IPGIQF 140 (844)
Q Consensus 128 ~P~WL~~----~p~~~~ 140 (844)
||.|+.+ +|+|.+
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999975 577654
No 23
>PLN02803 beta-amylase
Probab=97.81 E-value=5.1e-05 Score=87.26 Aligned_cols=81 Identities=22% Similarity=0.476 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCC-CCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CCC
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GFP 129 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G~P 129 (844)
+.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++..---=--|+- +-| -||
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 44577899999999999999999999998 599999996 67789999999999653322122322 111 289
Q ss_pred ccccc----CCCeee
Q 003147 130 LWLHF----IPGIQF 140 (844)
Q Consensus 130 ~WL~~----~p~~~~ 140 (844)
.|+.+ +|+|.+
T Consensus 183 ~WV~e~~~~~pDi~f 197 (548)
T PLN02803 183 PWVLEEMSKNPDLVY 197 (548)
T ss_pred HHHHHhhhcCCCceE
Confidence 99975 577754
No 24
>PLN02161 beta-amylase
Probab=97.75 E-value=8.6e-05 Score=85.01 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=62.4
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCC-CCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCC-----CC
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~G-----G~ 128 (844)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++.+--.=--|+- +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 344577899999999999999999999998 799999996 77789999999999653322222322 111 27
Q ss_pred Cccccc----CCCeee
Q 003147 129 PLWLHF----IPGIQF 140 (844)
Q Consensus 129 P~WL~~----~p~~~~ 140 (844)
|.|+.+ +|+|.+
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999975 577754
No 25
>TIGR03356 BGL beta-galactosidase.
Probab=97.72 E-value=6.7e-05 Score=86.55 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (844)
..|+++|+.||++|+|++++-|.|.-.+|. +|++|.+|....+++|+.+.++||.+|+-.=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 468999999999999999999999999999 79999988889999999999999998865422 248999986
Q ss_pred CCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 135 ~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
..+- .++...++..+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5442 346666666777777776665
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.64 E-value=0.00095 Score=73.25 Aligned_cols=226 Identities=21% Similarity=0.249 Sum_probs=111.2
Q ss_pred cceEE-ECCEEeEEEEEEec--CCCCCcccHHHHHHHHHhCCCCEEEEccc--cCcc-C-------C----CCceeeecC
Q 003147 31 HRAVV-IGGKRRVLISGSIH--YPRSTPEMWPDLIQKSKDGGLDVIETYVF--WNLH-E-------P----VRNQYNFEG 93 (844)
Q Consensus 31 ~~~f~-ldG~~~~~~sG~~H--y~R~~~~~W~d~l~k~ka~GlN~V~~yv~--Wn~h-E-------p----~~G~~dF~g 93 (844)
++.|. -||+||+.++=... ..|...+.|+.-|+..|+.|||+|++-++ |..+ . | .++.+||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 45566 79999999984433 13578899999999999999999998765 4322 1 1 122377775
Q ss_pred c-----chHHHHHHHHHHcCcEEEEec---CcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhc
Q 003147 94 R-----YDLVKFVKLVAEAGLYAHLRI---GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (844)
Q Consensus 94 ~-----~dl~~fl~la~~~GL~Vilrp---GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~ 165 (844)
. ..+++.|+.|.+.||.+-|-| +||+-.-|-+| ...| =.+.+++|.+.|+++++..
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--------~~~m--------~~e~~~~Y~~yv~~Ry~~~ 145 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--------PNIM--------PPENAERYGRYVVARYGAY 145 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------------TTSS---------HHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--------ccCC--------CHHHHHHHHHHHHHHHhcC
Confidence 4 489999999999999976543 23332333222 1111 1366888999999999854
Q ss_pred ccccccCCceEeccccccccccccccCcccHHHHHHHHHHHhhcCCCcc-eEeccCC-CCC-----Cc-----cccCCCC
Q 003147 166 KLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVP-WVMCQQS-DAP-----DP-----IINTCNG 233 (844)
Q Consensus 166 ~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~-----~~-----~~~t~ng 233 (844)
+ +|| |=|-||+. ......++.+.+.+.+++..-.-+ .++..+. ..+ .+ .+.+.++
T Consensus 146 ~-------Nvi-W~l~gd~~-----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~ 212 (289)
T PF13204_consen 146 P-------NVI-WILGGDYF-----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHN 212 (289)
T ss_dssp S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S-
T ss_pred C-------CCE-EEecCccC-----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCC
Confidence 3 355 66899991 123567788888888877532212 2232221 010 00 0111111
Q ss_pred ccc-Cc-------cC-CCCCCCCeeeeec-ccccccccCCCCCCCCHHHHHHHHHHHHHcCC
Q 003147 234 FYC-DQ-------FT-PNSNNKPKMWTEN-WSGWFLSFGGAVPYRPVEDLAFAVARFFQRGG 285 (844)
Q Consensus 234 ~~~-~~-------~~-~~~p~~P~~~~E~-~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 285 (844)
... +. .. ...|.+|.++.|- |.|--..+.......+++++...+=+-+-.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 213 RYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp -TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred cccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 111 11 11 4568999999997 45543333333345677777765544444565
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.32 E-value=0.00023 Score=80.30 Aligned_cols=114 Identities=19% Similarity=0.318 Sum_probs=70.3
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCccccc----ccCCCCCCcc
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCA----EWNFGGFPLW 131 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYica----Ew~~GG~P~W 131 (844)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| ..++++++++.||++.+-.-=--|+ ..-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 99999996 7888999999999975432112221 1111137999
Q ss_pred ccc---CCCeeecc--------------CChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 003147 132 LHF---IPGIQFRT--------------DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (844)
Q Consensus 132 L~~---~p~~~~R~--------------~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 180 (844)
+.+ ..+|.+.. .... ++.-+.|++.+...++ +++ +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 12553211 0112 4444555555555555 332 57777776
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.99 E-value=0.001 Score=74.07 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=107.3
Q ss_pred EEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEc--cccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccc
Q 003147 43 LISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETY--VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 43 ~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~y--v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 689999987765442 3444444568988874 5699999999999999 89999999999999975221 1
Q ss_pred cccCCCCCCcccccCCCeeeccC-ChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccccccccc---------c
Q 003147 121 AEWNFGGFPLWLHFIPGIQFRTD-NEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS---------A 190 (844)
Q Consensus 121 aEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 190 (844)
=|.. ..|.|+...+.. ... .+...++++++++.++.+++. -|.|.+|-|=||-=.... .
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1544 789999875110 000 124788899999999888762 289999999999743221 1
Q ss_pred cCcccHHHHHHHHHHHhhcCCCcceEeccC
Q 003147 191 YGAAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (844)
Q Consensus 191 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 220 (844)
+..-+.+|+...-+++++...++.+|.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 112345788888888888777888888764
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.0048 Score=67.54 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=97.7
Q ss_pred HHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCC
Q 003147 65 SKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDN 144 (844)
Q Consensus 65 ~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d 144 (844)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|+..+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4555554555556699999999999999 5799999999999965 322222 444 5788988633 244
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccc----c---ccCcccHHHHHHHHHHHhhcCCCcceEe
Q 003147 145 EPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID----S---AYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (844)
Q Consensus 145 ~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~----~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (844)
+..++.+++++..++.+++ |-|+.|-|=||-=... . ..+-.+.+|+++.-+.+|+.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999987 3599999999974321 1 1113567899999999998776666777
Q ss_pred ccC
Q 003147 218 CQQ 220 (844)
Q Consensus 218 ~~~ 220 (844)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.82 E-value=0.012 Score=59.52 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCcccHHHHHHHHHhCCCCEEEEccccCccC-----CC---CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccc
Q 003147 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-----PV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (844)
Q Consensus 51 ~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hE-----p~---~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaE 122 (844)
..+.++.|+.+|+.||++|+++|=+- |...+ |. ++.|.-....-|+.+|++|++.||+|++..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 57899999999999999999998531 22111 11 22233334457999999999999999997531
Q ss_pred cCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccCcccHHHHHHH
Q 003147 123 WNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWA 202 (844)
Q Consensus 123 w~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 202 (844)
-|.|..+ .|+... ..+-++++..+.. .|++...+-+|=|-.|..... ....++.+.|
T Consensus 88 -----~~~~w~~--------~~~~~~---~~~~~~v~~el~~---~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWE---AERNKQVADELWQ---RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred -----Cchhhhc--------cCHHHH---HHHHHHHHHHHHH---HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 2333331 222221 1111224444431 345555788888888887542 2345666666
Q ss_pred HHHHhhcCCCcceE
Q 003147 203 AGMALSLDTGVPWV 216 (844)
Q Consensus 203 ~~~~~~~g~~vp~~ 216 (844)
.+.+++.--+-|++
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 66666542244433
No 31
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.0051 Score=70.71 Aligned_cols=118 Identities=10% Similarity=0.048 Sum_probs=70.2
Q ss_pred CcccH-----HHHHHHHHhCCCCEEEEccccCccCCC----CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccC
Q 003147 54 TPEMW-----PDLIQKSKDGGLDVIETYVFWNLHEPV----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (844)
Q Consensus 54 ~~~~W-----~d~l~k~ka~GlN~V~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~ 124 (844)
...-| ++.+..||.+|||+||+++.|..+++. |...+=+--..|++.|+.|++.||+|+|-.-=| +.-
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGG 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCC
Confidence 45568 899999999999999999994443554 333311211278999999999999999873111 000
Q ss_pred -CCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccc
Q 003147 125 -FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (844)
Q Consensus 125 -~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 186 (844)
++--..|....-. .....+++..+-+..|+.+. ++.-.||++|+=||.-.
T Consensus 143 ~~~~~~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f-------~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYK-----EENENVEATIDIWKFIANRF-------KNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCccccccccc-----ccchhHHHHHHHHHHHHHhc-------cCCCceeeeeeecCCcc
Confidence 0001123221100 01222333333344444444 44568999999999974
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.54 E-value=0.006 Score=68.12 Aligned_cols=104 Identities=26% Similarity=0.480 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCCC-ceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCC
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPG 137 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~ 137 (844)
+|.|+-||+.|+|.||.=| |+ .|.. |..|.+ +..+..+.|+++||.|+|-.- |. -.|-- |+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~WaD--Pg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWAD--PG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS--B--TT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCCC--CC
Confidence 6899999999999999987 44 4554 555544 555666666789999999763 22 22321 22
Q ss_pred ee-----ecc-CChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccc
Q 003147 138 IQ-----FRT-DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (844)
Q Consensus 138 ~~-----~R~-~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 186 (844)
-. -+. +-..-.++|..|.+.++..|+. +|=.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 11 111 3456778999999999999984 4667889999999864
No 33
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.47 E-value=0.0023 Score=74.66 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
..|+++|+.||++|+|+.++-|.|.-.+|. +|++|-+|....+++|+.+.++||..++-. ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 459999999999999999999999999999 699999999999999999999999977653 2345899998
Q ss_pred cCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
+..+- .++...+...+|.+.+++++.
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 74442 245566666667777776665
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.18 E-value=0.0041 Score=72.83 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
..|+++++.||++|+|+.++-+.|.-.+|. ++++|=+|....+++|+.+.++||.+++-. --=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 457999999999999999999999999997 566788888899999999999999987653 1235899997
Q ss_pred cC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
.. .+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 442 234444444555555555444
No 35
>PLN02998 beta-glucosidase
Probab=96.17 E-value=0.0044 Score=72.95 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (844)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-+|...-+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 6788989999999999999999998665431 13 36999986
Q ss_pred C-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 135 ~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
. .+-.=|..=..|.++++..++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5531122223455555555555555554
No 36
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.08 E-value=0.006 Score=71.49 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
..|+++++.||++|+|+-++-|.|.-..|. +|++|-.|....+++|+.+.++||..++-. + -=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL-------~-H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL-------S-HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-------e-CCCCCHHHH
Confidence 458999999999999999999999999996 677888899999999999999999987653 1 124799997
Q ss_pred cC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
.. .+- .++...++-.+|.+.++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 442 344555555555555555554
No 37
>PLN02814 beta-glucosidase
Probab=96.02 E-value=0.0058 Score=72.08 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=73.9
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
...|+++++.||++|+|+-++-|.|.-.+|. +|.+|-+|...-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHH
Confidence 3458999999999999999999999999996 6889999999999999999999999765431 23 3699998
Q ss_pred cC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
+. .+-.=|..=..|.++++..++++..+++
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 64 4421122223455555554554444443
No 38
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.87 E-value=0.054 Score=65.44 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCcceEEEEEEeecCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCcc-EEEEEEe
Q 003147 474 DQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKN-TFDLLSL 552 (844)
Q Consensus 474 d~~gYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~~-~L~iLve 552 (844)
+..|..||++++.++... .+++..|.+.++...+.|||||+++|.-.+.. ..+.+.+.-.++.|.+ +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 357889999999986432 34567899999999999999999999876432 2355554444566654 8999997
Q ss_pred ecCcc---ccCCCCc--------------ccCcCcccceEeccC
Q 003147 553 TVGLQ---NYGAFYE--------------KTGAGITGPVQLKGS 579 (844)
Q Consensus 553 n~Gr~---NyG~~~~--------------~~~KGI~g~V~l~g~ 579 (844)
|.-+. ..|...+ -...||..+|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 74211 0111100 135799999999654
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.68 E-value=0.013 Score=68.89 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
..|+++++.||++|+|+-++-|.|+-.+|. +|++|=.|...-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 458999999999999999999999999997 6678888989999999999999998665430 12 4799997
Q ss_pred cC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
+. .+-.=|..=..|.++++..++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4532222223466666666666655554
No 40
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.47 E-value=0.014 Score=68.42 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC--CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
..|+++++.||++|+|+-++-|.|.-.+|. +|++|=.|...-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 458999999999999999999999999997 5678888889999999999999998765431 12 4799997
Q ss_pred cC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
.. .+-.=|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4532222223455555555555555554
No 41
>PLN02849 beta-glucosidase
Probab=95.46 E-value=0.014 Score=68.90 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (844)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|=+|....+++|+.+.++||.-++-.= =| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 458999999999999999999999999996 4788888999999999999999999765431 12 37999976
Q ss_pred C-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 135 ~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
. .+-.=|..=..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4421122224456666666666555554
No 42
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.37 E-value=0.017 Score=67.58 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (844)
..|+++++.||++|+|+-++-|.|.-.+|. +|.+|=+|...-+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 458999999999999999999999999996 6788888999999999999999999776541 12 38999986
Q ss_pred CCCeeeccCChhhHHHHHHHHHHHHHHH
Q 003147 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMM 162 (844)
Q Consensus 135 ~p~~~~R~~d~~y~~~v~~~~~~l~~~~ 162 (844)
..+- .++...++-.+|.+.+++++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 5442 23444444444444444444
No 43
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.37 E-value=0.044 Score=64.29 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=71.6
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~ 134 (844)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-.|...-+++|+.+.++||.-++-.= -=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH--------HFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------CCCCcHHHHH
Confidence 458999999999999999999999999996 5788889999999999999999998665431 1247999986
Q ss_pred CCCeeeccCChhhHHHHHHHHHHHHHHH
Q 003147 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMM 162 (844)
Q Consensus 135 ~p~~~~R~~d~~y~~~v~~~~~~l~~~~ 162 (844)
..+- .++...++..+|.+.+++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 5442 23444444444444444443
No 44
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.17 E-value=0.085 Score=67.47 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=67.8
Q ss_pred ceEEEEEEeecCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCccEEEEEEeecCc
Q 003147 477 DYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGL 556 (844)
Q Consensus 477 gYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~iLven~Gr 556 (844)
+-.|||+++.++... .+.+..|.+.++...++|||||++||.-.+.. ..+.|.+.--++.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 557999999986532 24567899999999999999999999765432 235555544466788999999975332
Q ss_pred cccCCCCcc----cCcCcccceEeccCC
Q 003147 557 QNYGAFYEK----TGAGITGPVQLKGSG 580 (844)
Q Consensus 557 ~NyG~~~~~----~~KGI~g~V~l~g~~ 580 (844)
|..+++ ...||..+|.|--.+
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~p 207 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGKP 207 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEeC
Confidence 333332 247999999986553
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.94 E-value=0.12 Score=56.22 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHH---HcCcEEEEecCcccccccCCCCCCcccc
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
.=.|.|+-+|++|+|-|++-| ||.---..|.=-=.|+.|+.+.+++|+ ..||+|++-.= |. -.|-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS---------DfwaD 132 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS---------DFWAD 132 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch---------hhccC
Confidence 347899999999999999865 665433444433456789999999986 46999999751 11 11221
Q ss_pred ----cCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccc
Q 003147 134 ----FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (844)
Q Consensus 134 ----~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 186 (844)
++|..-.-.+-..-.+++-.|.+..+..+++ +|=-+=||||.||-.+
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~------eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK------EGILPDMVQVGNETNG 183 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH------cCCCccceEeccccCC
Confidence 1232111223455677888888988888874 3445679999999864
No 46
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.57 E-value=0.16 Score=64.99 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=65.5
Q ss_pred cceEEEEEEeecCCCCccccCCC-ceeEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCccEEEEEEeec
Q 003147 476 SDYLWYSLSTNIKADEPLLEDGS-KTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTV 554 (844)
Q Consensus 476 ~gYl~Y~T~i~~~~~~~~~~~g~-~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~iLven~ 554 (844)
.+-.||++++.++... . +. +..|.+.++.-.+.|||||+++|.-.+. ...+.|.+.--++.|.|.|.|.|-.-
T Consensus 119 n~~gwYrr~F~vp~~w--~--~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW--L--QSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh--c--CCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999986431 1 22 4689999999999999999999976543 22355655444667889998888432
Q ss_pred CccccCCCCcc----cCcCcccceEeccC
Q 003147 555 GLQNYGAFYEK----TGAGITGPVQLKGS 579 (844)
Q Consensus 555 Gr~NyG~~~~~----~~KGI~g~V~l~g~ 579 (844)
- -|.++++ ...||..+|.|--.
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEEc
Confidence 1 1333332 23699999998654
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.85 E-value=0.3 Score=47.64 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=63.8
Q ss_pred HHHHHHHhCCCCEEEEccc----c-----CccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 003147 60 DLIQKSKDGGLDVIETYVF----W-----NLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~yv~----W-----n~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~ 130 (844)
+-++.+|++|+|+|.++.- | ..|.+.|+- . ..-|.++++.|++.||.|++|...- --|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L---~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL---K-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC---C-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999998432 2 245555554 1 2256999999999999999997543 23333345699
Q ss_pred ccccCCCee-------------eccCChhhHHHHHHHHHHHHHHH
Q 003147 131 WLHFIPGIQ-------------FRTDNEPFKAEMQRFTAKIVDMM 162 (844)
Q Consensus 131 WL~~~p~~~-------------~R~~d~~y~~~v~~~~~~l~~~~ 162 (844)
|+..+++-+ .-+.+..|++.+.+-+++++.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997643311 11235578887777777766544
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.063 Score=62.07 Aligned_cols=101 Identities=19% Similarity=0.289 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCCCc--eeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G--~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL 132 (844)
-..++++++.||+||+|+.|+-|.|+-.-|..+ +.+=.|-...+++++.|.++|+.-++-.= =|+ +|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHH
Confidence 345899999999999999999999999999654 48888999999999999999999766531 132 69999
Q ss_pred ccC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 133 HFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 133 ~~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
.+. .+=.=|..=..|.++++--|+++-.+++
T Consensus 130 ~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 130 QKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 875 3532232223444444444444444444
No 49
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=92.78 E-value=0.48 Score=55.93 Aligned_cols=141 Identities=20% Similarity=0.249 Sum_probs=73.9
Q ss_pred EEEecCCCCCcccHHHHHHHHH-hCCCCEEEEccccCcc--------C-CCCc--eeeecCcchHHHHHHHHHHcCcEEE
Q 003147 45 SGSIHYPRSTPEMWPDLIQKSK-DGGLDVIETYVFWNLH--------E-PVRN--QYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 45 sG~~Hy~R~~~~~W~d~l~k~k-a~GlN~V~~yv~Wn~h--------E-p~~G--~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
-|+-|....-++.|+..|+.++ +.||..|++ |++. | ..+| .|||+ .||.+++...+.||+-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444554567788999999997 779999998 4433 1 1233 29999 89999999999999987
Q ss_pred EecCcccccccCCCCCCcccccCCCeeec--------cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccc
Q 003147 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFR--------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (844)
Q Consensus 113 lrpGPYicaEw~~GG~P~WL~~~p~~~~R--------~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy 184 (844)
+..|- .|.++...+...+. .+...|.+.|+++++++..++..... . ---+.|.||.
T Consensus 102 vel~f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev---~---~W~fEiWNEP 165 (486)
T PF01229_consen 102 VELGF----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEV---S---TWYFEIWNEP 165 (486)
T ss_dssp EEE-S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHH---T---TSEEEESS-T
T ss_pred EEEEe----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccc---c---ceeEEeCcCC
Confidence 76642 45555433222111 12344555555555555554431110 0 0146899998
Q ss_pred cccccccCcccHHHHHHHHHHHh
Q 003147 185 GNIDSAYGAAGKSYIKWAAGMAL 207 (844)
Q Consensus 185 g~~~~~~~~~~~~y~~~l~~~~~ 207 (844)
............+|.+.-+..++
T Consensus 166 d~~~f~~~~~~~ey~~ly~~~~~ 188 (486)
T PF01229_consen 166 DLKDFWWDGTPEEYFELYDATAR 188 (486)
T ss_dssp TSTTTSGGG-HHHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHH
Confidence 75321111123457665444433
No 50
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.75 E-value=0.086 Score=60.51 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=111.3
Q ss_pred eEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCcc-CC---CCceeee-cCcchHHHHHHHHHHc
Q 003147 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLH-EP---VRNQYNF-EGRYDLVKFVKLVAEA 107 (844)
Q Consensus 33 ~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~la~~~ 107 (844)
.|.|+++++..++..--+.++..++=+++|+-|+-+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888888777888877777889999999999999994 444 55 3343222 2345789999999999
Q ss_pred CcEEEEecCcccccccCCCCCC---ccccc-CCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccc
Q 003147 108 GLYAHLRIGPYVCAEWNFGGFP---LWLHF-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (844)
Q Consensus 108 GL~VilrpGPYicaEw~~GG~P---~WL~~-~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE 183 (844)
+|+|+++. |..-=.+||.- .|.-. .|+-.+ -|+.++..-++|.+.+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998874 44444567753 24422 243222 266676667788888776444 3457999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHhh
Q 003147 184 YGNIDSAYGAAGKSYIKWAAGMALS 208 (844)
Q Consensus 184 yg~~~~~~~~~~~~y~~~l~~~~~~ 208 (844)
.-. .-...+..+++|+++|+--
T Consensus 148 ~lv---~~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 148 PLV---EAPISVNNFWDWSGEMYAY 169 (587)
T ss_pred ccc---cccCChhHHHHHHHHHHHH
Confidence 322 1123578999999999754
No 51
>PRK09936 hypothetical protein; Provisional
Probab=90.71 E-value=0.44 Score=52.08 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=47.1
Q ss_pred CCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCc-chHHHHHHHHHHcCcEEEEe
Q 003147 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR-YDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 51 ~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL~Vilr 114 (844)
.+++++.|+.+++.+|+.|++|+=+ =|..-- .=||.|. -.|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG----~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRYG----DADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeecc----CCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999999754 454331 1188765 48999999999999999985
No 52
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=90.60 E-value=0.31 Score=48.50 Aligned_cols=57 Identities=30% Similarity=0.469 Sum_probs=42.1
Q ss_pred EEEcCCCC--CCeEEeeCCCc-eEEEEECCeeccccccccccCCCCCCCCCCccCCcCccccccCCCCccceeeecCccc
Q 003147 627 TFDAPAGS--EPVAIDFTGMG-KGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSW 703 (844)
Q Consensus 627 ~f~~p~~~--d~t~Ld~~g~g-KG~vwVNG~nlGRYW~~~i~~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~ 703 (844)
+|++|+.. ..++|.+.|.. ...|||||+-||+-.. +-.-.-+.|+. .
T Consensus 75 ~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-----------------------------~~~~~~~dIt~-~ 124 (167)
T PF02837_consen 75 TFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-----------------------------GYTPFEFDITD-Y 124 (167)
T ss_dssp EEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-----------------------------TTS-EEEECGG-G
T ss_pred EEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-----------------------------CcCCeEEeChh-h
Confidence 89998642 44899998864 9999999999999662 12333455864 7
Q ss_pred cccCC-ceEEE
Q 003147 704 LKSSG-NTLVL 713 (844)
Q Consensus 704 Lk~g~-N~ivv 713 (844)
|++|. |+|.|
T Consensus 125 l~~g~~N~l~V 135 (167)
T PF02837_consen 125 LKPGEENTLAV 135 (167)
T ss_dssp SSSEEEEEEEE
T ss_pred ccCCCCEEEEE
Confidence 99988 88776
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=90.27 E-value=0.67 Score=46.86 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=42.7
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCcc-------CCCCcee-----eecCcchHHHHHHHHHHcCcEEEEecCc
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLH-------EPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~h-------Ep~~G~~-----dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (844)
-+.++|..+|++|+|+|.+-=++..- .-.+..| .|....++.+|++.|+++||.||+-.=|
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 35667777999999999974332221 1122222 4556679999999999999999987644
No 54
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.22 E-value=1.1 Score=50.05 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=69.4
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccC-------ccCCC-------Cce-eeecCcchHHHHHHHHHHcCcEEEEecCcc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWN-------LHEPV-------RNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn-------~hEp~-------~G~-~dF~g~~dl~~fl~la~~~GL~VilrpGPY 118 (844)
.++.-++.|++++++|||+|-.-|-+. -.+|. +|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 567778899999999999997544432 12221 111 0133 79999999999999999765 11
Q ss_pred cccccCC----CCCCcccc-cCCCeeecc----CChh----hHHHHHHHHHHHHHHHhhcccccccCCceEeccccc
Q 003147 119 VCAEWNF----GGFPLWLH-FIPGIQFRT----DNEP----FKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (844)
Q Consensus 119 icaEw~~----GG~P~WL~-~~p~~~~R~----~d~~----y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN 182 (844)
-..--.. -.-|.|+. +.++..... .+.. -..+|++|+..++..|.. .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110011 12477876 345532222 1111 236777777777765542 22 367788773
No 55
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.58 E-value=4.3 Score=43.95 Aligned_cols=98 Identities=18% Similarity=0.338 Sum_probs=62.0
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccc
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL~ 133 (844)
..-|++.|+.++++|++.|++-+ +.. +..+...+++ ..++..+.+++++.||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 45699999999999999999943 222 2223445554 3478899999999999975 44321 01111
Q ss_pred cCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEec
Q 003147 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (844)
Q Consensus 134 ~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (844)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~ 113 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQL 113 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEe
Confidence 112355556666666777666665 23 5666654
No 56
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.13 E-value=4.4 Score=49.36 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHH-HHHHhCCCCEEEE-ccccCccCC----CCc-----eeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 60 DLI-QKSKDGGLDVIET-YVFWNLHEP----VRN-----QYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 60 d~l-~k~ka~GlN~V~~-yv~Wn~hEp----~~G-----~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
++| .-+|++|+|+|++ .|+.+-... .+- .-.|.+..||.+|++.|++.||.|||-.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 354 6779999999998 676532111 000 1134556799999999999999999874
No 57
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.72 E-value=3 Score=48.11 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=78.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEcc-------------ccCccCCCCceee-ecCcchHHHHHHHHHHcCcEEEEecCccc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYV-------------FWNLHEPVRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv-------------~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~VilrpGPYi 119 (844)
.+.+-.+.|.+++++|+|||-.-| +|..-- ||++- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 677788999999999999997422 244332 44432 12444788899999999999999887776
Q ss_pred ccccCCCC---CCcccccC-CCeee-ccCC-------hhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccccc
Q 003147 120 CAEWNFGG---FPLWLHFI-PGIQF-RTDN-------EPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (844)
Q Consensus 120 caEw~~GG---~P~WL~~~-p~~~~-R~~d-------~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 185 (844)
-|--..-. -|.|+... |+... |... .+..-+|+.|+..++..+.+ .+ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 55322211 36777753 55433 2221 13457788888777654442 23 466788766554
No 58
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=88.43 E-value=0.63 Score=46.49 Aligned_cols=64 Identities=20% Similarity=0.088 Sum_probs=37.6
Q ss_pred EeeeecCCCCC--CCCCCC-----CCcccCCchHHHHHHHccCCCceEEeec----CCcCC--CCCC--CCcceEEEEEE
Q 003147 778 IKFASFGTPLG--TCGSFS-----RGRCSSARSLSVVRQACVGSKSCSIGVS----VNTFG--DPCK--GVMKSLAVEAS 842 (844)
Q Consensus 778 I~~A~YGr~~~--~C~~~~-----~~~C~~~~s~~~V~~~C~Gk~~C~v~a~----~~~Fg--DPCp--gt~KYL~V~Y~ 842 (844)
|..|.||.... .+.... ...+...+++-.+ +|.=+.++-.... ..+.| |||| |..|.|.|.|+
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipL--q~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPL--QALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhh--hhEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 78999999732 332211 1223334554333 3444445444333 23445 9999 88999999997
Q ss_pred e
Q 003147 843 C 843 (844)
Q Consensus 843 C 843 (844)
.
T Consensus 133 f 133 (151)
T PF11875_consen 133 F 133 (151)
T ss_pred E
Confidence 5
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.51 E-value=6 Score=49.23 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=36.5
Q ss_pred HHHHhCCCCEEEE-ccccC----ccCCCCce-----eeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 63 QKSKDGGLDVIET-YVFWN----LHEPVRNQ-----YNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 63 ~k~ka~GlN~V~~-yv~Wn----~hEp~~G~-----~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.-+|++|+|+|.. .|+=. .|--.+.. =.|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6679999999996 45310 11111111 124556799999999999999999874
No 60
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=86.23 E-value=3.4 Score=49.06 Aligned_cols=333 Identities=18% Similarity=0.288 Sum_probs=151.6
Q ss_pred EEeEEEEEEecC------CCCCcccHHHHHHHH---HhCCCCEEEEccc--------cCccCCCCceee---ecCc----
Q 003147 39 KRRVLISGSIHY------PRSTPEMWPDLIQKS---KDGGLDVIETYVF--------WNLHEPVRNQYN---FEGR---- 94 (844)
Q Consensus 39 ~~~~~~sG~~Hy------~R~~~~~W~d~l~k~---ka~GlN~V~~yv~--------Wn~hEp~~G~~d---F~g~---- 94 (844)
+.+.=+||++=- .+.+++.=++.|+.+ +-+|++.+|+.|- +.+-+ .|+-|+ |+=.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 445557777632 233433322233333 4589999998875 22222 223221 2211
Q ss_pred chHHHHHHHHHHc--CcEEEEecCcccccccCCCCCCcccccCCCe----eecc-CChhhHHHHHHHHHHHHHHHhhccc
Q 003147 95 YDLVKFVKLVAEA--GLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRT-DNEPFKAEMQRFTAKIVDMMKQEKL 167 (844)
Q Consensus 95 ~dl~~fl~la~~~--GL~VilrpGPYicaEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~v~~~~~~l~~~~~~~~~ 167 (844)
..+-.+|+.|++. +|+++.-| |. .|+|+.....+ .++. ..+.|.++..+||.+.++.++.
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 1234578877764 57777766 53 69999764322 2442 3467888888999988888874
Q ss_pred ccccCCceEeccccccccccc---cccC-----c-ccHHHHH-HHHHHHhhcCC--CcceEeccCC--CCCC---cccc-
Q 003147 168 YASQGGPIILSQIENEYGNID---SAYG-----A-AGKSYIK-WAAGMALSLDT--GVPWVMCQQS--DAPD---PIIN- 229 (844)
Q Consensus 168 ~~~~gGpII~~QiENEyg~~~---~~~~-----~-~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~- 229 (844)
+|=+|-++-+-||..... ..|. + ..++|+. +|..++++.|+ ++-++..+.. ..++ .++.
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 455899999999987421 0121 1 2356775 48888998876 6766665531 1121 1111
Q ss_pred -----CCC--Cccc---C-------ccCCCCCCCCeeeeecccccccccCCCCCC---CCHHHHHHHHHHHHHcCCeeee
Q 003147 230 -----TCN--GFYC---D-------QFTPNSNNKPKMWTENWSGWFLSFGGAVPY---RPVEDLAFAVARFFQRGGTFQN 289 (844)
Q Consensus 230 -----t~n--g~~~---~-------~~~~~~p~~P~~~~E~~~GWf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 289 (844)
.+. ++++ + ......|++.++.||-..|.- .|+..... ..++..+..+..-|..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 1111 1 111346889999999976531 12211111 1123344444444566654 2
Q ss_pred eeee------eccCCCCCC-CCCCCccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcce
Q 003147 290 YYMY------HGGTNFDRT-SGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYPSLGPNLEA 362 (844)
Q Consensus 290 ~YM~------hGGTNfG~~-~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~ 362 (844)
+-++ .||-|++.- ..++..+.. +. +|. ..+|.|+.|..+.+|++.-+..+... . .......+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st--~-~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGST--S-SSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEE--E-SSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEee--c-cCCCCceeE
Confidence 2222 488887532 122221111 11 121 23789999998877765322111000 0 000112234
Q ss_pred eEeecCCCceeeeeeccCCCc-ceEEEecC-------eeeecCCcce
Q 003147 363 TVYKTGSGLCSAFLANIGTNS-DVTVKFNG-------NSYLLPAWSV 401 (844)
Q Consensus 363 ~~y~~~~~~~~~fl~N~~~~~-~~~v~~~~-------~~~~l~~~sv 401 (844)
..|...++..+..+.|..+.. .++|++++ ..+.||+.|+
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 455544454555555544332 33455542 2456666554
No 61
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.43 E-value=1.2 Score=52.48 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=46.5
Q ss_pred ecCCCCC----cccHH---HHHHHHHhCCCCEEEE-ccccCc-----cCCCCce-e-------------eecCcchHHHH
Q 003147 48 IHYPRST----PEMWP---DLIQKSKDGGLDVIET-YVFWNL-----HEPVRNQ-Y-------------NFEGRYDLVKF 100 (844)
Q Consensus 48 ~Hy~R~~----~~~W~---d~l~k~ka~GlN~V~~-yv~Wn~-----hEp~~G~-~-------------dF~g~~dl~~f 100 (844)
+|.|-|+ .+.|+ +.|.-+|++|+++|-+ .++-+. |--.+-- | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555554 35575 5677789999999987 455432 3222211 2 24456799999
Q ss_pred HHHHHHcCcEEEEec
Q 003147 101 VKLVAEAGLYAHLRI 115 (844)
Q Consensus 101 l~la~~~GL~Vilrp 115 (844)
++.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999874
No 62
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.75 E-value=8 Score=41.67 Aligned_cols=131 Identities=16% Similarity=0.221 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL~~ 134 (844)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 46999999999999999999532 2222 11122333 3478999999999999875 3322 11001
Q ss_pred CCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccc--cccCcccHHHHHHHHHHHhhcCCC
Q 003147 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID--SAYGAAGKSYIKWAAGMALSLDTG 212 (844)
Q Consensus 135 ~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 212 (844)
.+.+.|+.-+++..+.++++++..+. + |.+.|-+.--..+.... ..+ ..-.+.++.|.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 12234555555556666666665552 2 45555442000000000 000 01124667777778777765
Q ss_pred c
Q 003147 213 V 213 (844)
Q Consensus 213 v 213 (844)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 3
No 63
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=83.36 E-value=1.6 Score=49.58 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=47.9
Q ss_pred EEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCccc
Q 003147 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (844)
Q Consensus 44 ~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYi 119 (844)
+|=|+++...+.+..+..|++|+++|+..|=| ++|.|+...=+.. ..+..++++|+++||.|++-..|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHH
Confidence 56678887778899999999999999988766 7999985332211 3789999999999999999987743
No 64
>PRK01060 endonuclease IV; Provisional
Probab=83.13 E-value=15 Score=39.66 Aligned_cols=93 Identities=13% Similarity=0.244 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEE---EEecCcccccccCCCCCCccccc
Q 003147 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA---HLRIGPYVCAEWNFGGFPLWLHF 134 (844)
Q Consensus 58 W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V---ilrpGPYicaEw~~GG~P~WL~~ 134 (844)
+++.|++++++|++.|++.+. +-|.-.++.++- .++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999999653 112212222222 26888999999999973 32 33431
Q ss_pred CCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecc
Q 003147 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (844)
Q Consensus 135 ~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~Q 179 (844)
+.+-+.|+..+++..+.+++.++..+ .+ |-++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334577777777777777777655 23 44555554
No 65
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.10 E-value=18 Score=45.00 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCEEEE-ccc-------cCccCCCCcee----eecCcchHHHHHHHHHHcCcEEEEecCc
Q 003147 61 LIQKSKDGGLDVIET-YVF-------WNLHEPVRNQY----NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 61 ~l~k~ka~GlN~V~~-yv~-------Wn~hEp~~G~~----dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (844)
.|.-+|++|+|+|+. .|+ |.+.- -|-| .|.+..++.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 357789999999996 342 43211 0111 3455679999999999999999987533
No 66
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=82.88 E-value=73 Score=36.72 Aligned_cols=241 Identities=15% Similarity=0.176 Sum_probs=120.6
Q ss_pred cCCCCCcccHHHHHHHHHhCCCCEEEE-------ccccCccCCCCceeeec-CcchHHHHHHHHHHcCcEEEEecCcccc
Q 003147 49 HYPRSTPEMWPDLIQKSKDGGLDVIET-------YVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 49 Hy~R~~~~~W~d~l~k~ka~GlN~V~~-------yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
.+.+..++.|- +.+|++|+..|-. +-.|.-.-..-..-+-. ++--+.+|.+.|+++||++-+ |.-
T Consensus 77 ~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S 149 (384)
T smart00812 77 TAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHS 149 (384)
T ss_pred CchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcC
Confidence 33445666665 5678888886542 11244433211111111 222467888999999998766 433
Q ss_pred -cccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccCcccHHHH
Q 003147 121 -AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYI 199 (844)
Q Consensus 121 -aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 199 (844)
.+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.+.++ ||-++|- +-..+.. ...--.
T Consensus 150 ~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 150 LFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred HHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 36754 4443211111123456788888888888887777632 3344442 1111110 111113
Q ss_pred HHHHHHHhhcCCCc-ceEeccCCCCCCccccCCCCcc--c-CccCCC-CCCCCee-eeecccccccccCC-CCCCCCHHH
Q 003147 200 KWAAGMALSLDTGV-PWVMCQQSDAPDPIINTCNGFY--C-DQFTPN-SNNKPKM-WTENWSGWFLSFGG-AVPYRPVED 272 (844)
Q Consensus 200 ~~l~~~~~~~g~~v-p~~~~~~~~~~~~~~~t~ng~~--~-~~~~~~-~p~~P~~-~~E~~~GWf~~WG~-~~~~~~~~~ 272 (844)
+.|.++++++.-+. -.+.++.... .. ...|.. + +...+. ....|.- ++=.-.+|+-+-++ .....++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~~---~~-~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWGG---TG-CKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEccccc---cC-CCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 44666666654332 1122332110 00 000110 1 111110 0011211 11111356655554 344678999
Q ss_pred HHHHHHHHHHcCCeeeeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhh
Q 003147 273 LAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLC 342 (844)
Q Consensus 273 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~ 342 (844)
+...+.+..++|++++ + |- +-+.+|.+....-..|+++...++..
T Consensus 289 li~~l~~~Vsk~GnlL---L-----NV-----------------gP~~dG~ip~~~~~~L~~iG~Wl~~n 333 (384)
T smart00812 289 LIRDLVDIVSKGGNLL---L-----NV-----------------GPKADGTIPEEEEERLLEIGKWLKVN 333 (384)
T ss_pred HHHHHhhhcCCCceEE---E-----cc-----------------CCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999998741 1 11 23357777666677888888887654
No 67
>PRK14706 glycogen branching enzyme; Provisional
Probab=82.67 E-value=16 Score=44.88 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHhCCCCEEEE-ccc-------cCccCC--CCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 63 QKSKDGGLDVIET-YVF-------WNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 63 ~k~ka~GlN~V~~-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.-+|++|+|+|+. .|. |.+.-- ..=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999995 331 332110 0001123445799999999999999999864
No 68
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=81.97 E-value=4.2 Score=48.00 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=77.3
Q ss_pred cceEEECCEEeEEEEEEecCC-----CCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHH
Q 003147 31 HRAVVIGGKRRVLISGSIHYP-----RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (844)
Q Consensus 31 ~~~f~ldG~~~~~~sG~~Hy~-----R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~ 105 (844)
+-.|.|||.|.++.+++--+. |..-+.=+-.|+-++++|+|++++ |.- |. ..-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----Gv------YEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GV------YESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cc------ccchhHHHHhh
Confidence 357899999999998876542 223344455689999999999999 542 23 34689999999
Q ss_pred HcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccc
Q 003147 106 EAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (844)
Q Consensus 106 ~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE 183 (844)
+.||.|---. =+.|| +=..|..|++.|+.=++.=+.+|+.|| .||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACA------------------lYPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNE 444 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACA------------------LYPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNE 444 (867)
T ss_pred hccceehhhh-HHHhh------------------cccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCc
Confidence 9999774211 02232 223577899988887777777777544 5776654333
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=80.80 E-value=2.5 Score=52.35 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHhCCCCEEEE-ccc-------cCccCC---CCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 56 EMWPDLIQKSKDGGLDVIET-YVF-------WNLHEP---VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~-yv~-------Wn~hEp---~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+.|++.|..+|++|+|+|++ .|+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||-.
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34788999999999999996 232 443311 01 1135556799999999999999999874
No 70
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=80.56 E-value=12 Score=40.33 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHc-CcEEEE
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEA-GLYAHL 113 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~-GL~Vil 113 (844)
.-|++.|+.+|++|++.|++-+....-... ......+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 669999999999999999987643211111 111346899999999999 666554
No 71
>PRK14705 glycogen branching enzyme; Provisional
Probab=79.51 E-value=28 Score=45.77 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHhCCCCEEEE-ccc-------cCccC--CCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 62 IQKSKDGGLDVIET-YVF-------WNLHE--PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 62 l~k~ka~GlN~V~~-yv~-------Wn~hE--p~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
|.-+|++|+|+|+. .|+ |.+.- ...=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 68899999999996 342 43211 00001134456799999999999999999863
No 72
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=79.36 E-value=3.3 Score=41.85 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=70.2
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeec
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFR 141 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R 141 (844)
|+.++++|+..|+....+....... ...++.+.++++++||.+..--.+.. + .. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~--------~~--~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F--------WS--PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S--------SC--TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c--------cc--cccccc
Confidence 6789999999999966533222221 33799999999999999663321110 0 00 111123
Q ss_pred cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccc--ccccccc--cccCcccHHHHHHHHHHHhhcCCC
Q 003147 142 TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE--NEYGNID--SAYGAAGKSYIKWAAGMALSLDTG 212 (844)
Q Consensus 142 ~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 212 (844)
+..+. ++...+.+.+.++..+. + |.+.|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcce
Confidence 34444 77777777777777763 3 5667777643 2221100 000 12234666677777777754
No 73
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.37 E-value=23 Score=37.70 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
-+++.|++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985322 13588999999999999864
No 74
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.34 E-value=2.5 Score=45.27 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCEEEEccccCcc----CCCCcee-e----ecCcchHHHHHHHHHHcCcEEEEec
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLH----EPVRNQY-N----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~h----Ep~~G~~-d----F~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+.|.-+|++|+|+|.+-=++... --.+--| + |.+..+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 356888999999999974333322 1111111 1 2345699999999999999999864
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=76.09 E-value=28 Score=37.41 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
-|++.|+.++++|++.|++.... .|+-.+ +++ ..+++++-++++++||.|..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE
Confidence 49999999999999999983211 011111 122 24688999999999999763
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=75.96 E-value=4.5 Score=48.52 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCccCCCC--ceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 60 DLIQKSKDGGLDVIET-YVF-------WNLHEPVR--NQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~-yv~-------Wn~hEp~~--G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
++|.-+|++|+|+|.+ .|+ |.+.-..- =.=.|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999996 342 33221100 01124556799999999999999999874
No 77
>PLN00196 alpha-amylase; Provisional
Probab=74.85 E-value=10 Score=44.28 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCEEEEc-cccCc--cCCCCce-ee-----ecCcchHHHHHHHHHHcCcEEEEec
Q 003147 59 PDLIQKSKDGGLDVIETY-VFWNL--HEPVRNQ-YN-----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~y-v~Wn~--hEp~~G~-~d-----F~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+.|.-+|++|+++|-+- ++-+. |--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999874 43221 2222221 22 3344699999999999999999874
No 78
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.83 E-value=34 Score=36.88 Aligned_cols=125 Identities=18% Similarity=0.297 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccccC
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHFI 135 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL~~~ 135 (844)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999532 1111 01122333 2368899999999999875 332210 0010
Q ss_pred CCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccCcc-------cHHHHHHHHHHHhh
Q 003147 136 PGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA-------GKSYIKWAAGMALS 208 (844)
Q Consensus 136 p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~~~ 208 (844)
+-+.|+.-++...+.+++.++..+ .+ |.++|-+. |.. ..++.. -.+.++.|.+.+++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113455556666667777776666 23 56666542 110 001111 13456667777777
Q ss_pred cCCCc
Q 003147 209 LDTGV 213 (844)
Q Consensus 209 ~g~~v 213 (844)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77643
No 79
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=74.78 E-value=5.6 Score=43.99 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCC-CceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
..+..++.++++|+.||..=.+++-..++... -|.|.|.-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56778899999999997764444443333322 245666533 28999999999999999998877774
No 80
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=73.01 E-value=11 Score=42.31 Aligned_cols=110 Identities=20% Similarity=0.302 Sum_probs=67.7
Q ss_pred cccHHHHHHHHHhCCCCEEEEc-------cccCccCCCCceeeec-C-cchHHHHHHHHHHcCcEEEEecCcccccccCC
Q 003147 55 PEMWPDLIQKSKDGGLDVIETY-------VFWNLHEPVRNQYNFE-G-RYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNF 125 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~y-------v~Wn~hEp~~G~~dF~-g-~~dl~~fl~la~~~GL~VilrpGPYicaEw~~ 125 (844)
++.-+..|+.+++.|+|+|-+- |.+....|..-+..-. . ..|+.++++.++++|+|+|.|.=-+---.- .
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l-a 90 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL-A 90 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-h
Confidence 4566788999999999998753 3354444432222111 1 369999999999999999999732210000 0
Q ss_pred CCCCcccccC-CCeeeccCC-----hhhHHHHHHHHHHHHHHHhhc
Q 003147 126 GGFPLWLHFI-PGIQFRTDN-----EPFKAEMQRFTAKIVDMMKQE 165 (844)
Q Consensus 126 GG~P~WL~~~-p~~~~R~~d-----~~y~~~v~~~~~~l~~~~~~~ 165 (844)
.--|.|-.+. .+-..|... .+|.++|.+|.-.|+..++..
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 0135555421 111122111 258899999999999888854
No 81
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=73.01 E-value=13 Score=42.82 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=42.5
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
..+.|+++++.+|++||+...+-+- ....+.. ..|...++.|++.|++++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7788999999999999999888554 1222222 378899999999999999986
No 82
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=72.87 E-value=5.3 Score=43.06 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 677899999999999999998 45555554 34678999999999999999887
No 83
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=72.77 E-value=44 Score=38.50 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=52.7
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc----cccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE-ecCcccccccCCCCC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETY----VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL-RIGPYVCAEWNFGGF 128 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil-rpGPYicaEw~~GG~ 128 (844)
++....+++++++++|+..|+.. ++|..-+.+ -..++.++-+++++.||.|.. -++-+..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~-------- 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSH-------- 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCC--------
Confidence 34457899999999999999964 222111100 023578899999999999763 3321111
Q ss_pred CcccccCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 129 PLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 129 P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
|.|.. . .+=+.|+..+++.-+.+++.+..-+
T Consensus 95 ~~~~~--g--~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 95 PVFKD--G--GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ccccC--C--CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11211 1 1334567666665555566555544
No 84
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=71.70 E-value=34 Score=38.69 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=84.7
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHH---HcCcEEEEecCcccccccCCCCC-C
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGF-P 129 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~VilrpGPYicaEw~~GG~-P 129 (844)
.++..+.-++.+|++||+.--.|--| |.|.+-|++-++..- +.+|...|. |.+.-- =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 56778889999999999999998777 556677777776553 345554454 433211 1
Q ss_pred cccccCCCeeeccCChhhH--HHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHh
Q 003147 130 LWLHFIPGIQFRTDNEPFK--AEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMAL 207 (844)
Q Consensus 130 ~WL~~~p~~~~R~~d~~y~--~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 207 (844)
.|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.+. ++-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 232222222221 1221 223566677777777655555589999987422211 245789999999999
Q ss_pred hcCCCcceEe
Q 003147 208 SLDTGVPWVM 217 (844)
Q Consensus 208 ~~g~~vp~~~ 217 (844)
+.|+..+.+.
T Consensus 186 ~~G~~giyii 195 (345)
T PF14307_consen 186 EAGLPGIYII 195 (345)
T ss_pred HcCCCceEEE
Confidence 9999866554
No 85
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=70.07 E-value=7 Score=47.56 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCEEEE-ccc---------------cCccCC----CCceee----ec--CcchHHHHHHHHHHcCcEEEE
Q 003147 60 DLIQKSKDGGLDVIET-YVF---------------WNLHEP----VRNQYN----FE--GRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~-yv~---------------Wn~hEp----~~G~~d----F~--g~~dl~~fl~la~~~GL~Vil 113 (844)
+.|.-+|++|+|+|++ .|+ |.+.-- .++.|- |- ...+|.+|++.|+++||.|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999996 343 332210 001110 10 126899999999999999998
Q ss_pred ec
Q 003147 114 RI 115 (844)
Q Consensus 114 rp 115 (844)
-.
T Consensus 248 Dv 249 (605)
T TIGR02104 248 DV 249 (605)
T ss_pred EE
Confidence 74
No 86
>PLN02960 alpha-amylase
Probab=69.85 E-value=8.5 Score=48.37 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCccCCC--CceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 60 DLIQKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~-yv~-------Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+.|.-+|++|+|+|++ .|+ |.+.-.. .=.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4588999999999996 343 4322110 001123445799999999999999999875
No 87
>PRK09505 malS alpha-amylase; Reviewed
Probab=69.38 E-value=8.3 Score=47.57 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCEEEE-ccccCccCCC----Cc------------------eeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPV----RN------------------QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 58 W~d~l~k~ka~GlN~V~~-yv~Wn~hEp~----~G------------------~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||.++++.|++.||+||+-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999985 4554433221 11 112445679999999999999999987
Q ss_pred c
Q 003147 115 I 115 (844)
Q Consensus 115 p 115 (844)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 88
>PRK12313 glycogen branching enzyme; Provisional
Probab=68.81 E-value=8.6 Score=47.06 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHhCCCCEEEE-ccc-------cCccCC--CCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 62 IQKSKDGGLDVIET-YVF-------WNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 62 l~k~ka~GlN~V~~-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
|.-+|++|+|+|.. .|+ |.+.-. ..=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999995 453 321110 0001135566799999999999999999873
No 89
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=68.75 E-value=62 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHhCCCCEEEEccc
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVF 78 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~ 78 (844)
.--|+++|.-+|++||+-|+.-|-
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSvD 40 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSVD 40 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecc
Confidence 345999999999999999998654
No 90
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=67.82 E-value=7.6 Score=46.62 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=41.1
Q ss_pred cHHHHHHHHHhCCCCEEEE-ccccCccCCCCceee----------ecCcchHHHHHHHHHHcCcEEEEec
Q 003147 57 MWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYN----------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~d----------F~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
-+.++|.-+|++|+++|-+ .++-+-.. ...|+ |.+..||.+|++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3677889999999999986 34432110 01221 4455799999999999999999864
No 91
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=67.11 E-value=30 Score=40.01 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=70.1
Q ss_pred ecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCC----ceeeecCc---chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR----NQYNFEGR---YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~----G~~dF~g~---~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
-+|+.+..+.-.+.+++++++|++.+.+---|....... |.|--+-. .-|..+.+.+++.||+.=|+..|-+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 356778888888899999999999988887887542222 43322211 13999999999999999888888654
Q ss_pred cccC--CCCCCcccccCCCee---ec------cCChhhHHHHHHHHHHHHH
Q 003147 121 AEWN--FGGFPLWLHFIPGIQ---FR------TDNEPFKAEMQRFTAKIVD 160 (844)
Q Consensus 121 aEw~--~GG~P~WL~~~p~~~---~R------~~d~~y~~~v~~~~~~l~~ 160 (844)
++=. +-..|.|+...++.. -| .++|..++++...+.+++.
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~ 180 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLR 180 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHH
Confidence 3221 224799998755421 12 2456666655555555443
No 92
>PRK09989 hypothetical protein; Provisional
Probab=65.51 E-value=59 Score=34.73 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=34.5
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
-.+++|++++++|+..|++..+|. .+.+++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999943332 2367888899999999874
No 93
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=64.71 E-value=12 Score=45.00 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCEEEE-ccccCccCCCC-cee----------eecCcchHHHHHHHHHHcCcEEEEec
Q 003147 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPVR-NQY----------NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 58 W~d~l~k~ka~GlN~V~~-yv~Wn~hEp~~-G~~----------dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+.++|.-+|++|+++|-+ .|+-+ |.. .-| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567899999999999987 45422 111 122 23445799999999999999999864
No 94
>PRK10785 maltodextrin glucosidase; Provisional
Probab=64.66 E-value=12 Score=45.44 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCEEEE-ccccC--ccCCCCcee-----eecCcchHHHHHHHHHHcCcEEEEec
Q 003147 59 PDLIQKSKDGGLDVIET-YVFWN--LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~-yv~Wn--~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+.|.-+|++|+|+|-+ .||=+ .|--...-| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788899999999996 56532 121111111 24456799999999999999999863
No 95
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=64.41 E-value=13 Score=44.65 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhCCCCEEEE-ccccC---ccCCCCcee-----eecCcchHHHHHHHHHHcCcEEEEe
Q 003147 57 MWPDLIQKSKDGGLDVIET-YVFWN---LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~-yv~Wn---~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
-+.+.|.-+|++|+|+|-+ .|+=+ -|--..--| .|.+..|+.++++.|++.||+|||-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4677899999999999986 34411 110000000 2445579999999999999999985
No 96
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=64.08 E-value=20 Score=38.76 Aligned_cols=65 Identities=9% Similarity=0.205 Sum_probs=50.2
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCcee--eecC--cchHHHHHHHHHHcCcEEEEecCccc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY--NFEG--RYDLVKFVKLVAEAGLYAHLRIGPYV 119 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~--dF~g--~~dl~~fl~la~~~GL~VilrpGPYi 119 (844)
..+..++.++++++.||..=.+.+-+...+. .+.| +|.. --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5667888999999999986666665555543 3566 5542 23899999999999999999988877
No 97
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.98 E-value=22 Score=29.74 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=43.2
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788899999999999999732 333 58888765 5778999999999988754
No 98
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=63.75 E-value=15 Score=31.45 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.3
Q ss_pred CcceEEEEEECCEEEEEEeccCCC
Q 003147 506 SLGHALHAFINGKLVGSGYGSSSN 529 (844)
Q Consensus 506 ~~~D~a~Vfvng~~~G~~~~~~~~ 529 (844)
...|.|-||++++|+|+++++...
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 457899999999999999986444
No 99
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.04 E-value=17 Score=40.35 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=52.3
Q ss_pred CCCCcccHHHHHHHHHhCCCC--EEEEccccCccCCCCceeeecCc--chHHHHHHHHHHcCcEEEEecCccccc
Q 003147 51 PRSTPEMWPDLIQKSKDGGLD--VIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (844)
Q Consensus 51 ~R~~~~~W~d~l~k~ka~GlN--~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYica 121 (844)
.....+.-++.++++++.|+. +|-+-..|- ..-|.|.|.-. -|..++++..++.|+++++..=|||..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456788889999999999965 666655663 34566666532 389999999999999999988777753
No 100
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=62.79 E-value=23 Score=39.06 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred EEEEEEecCCCCCccc-HH---HHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCc
Q 003147 42 VLISGSIHYPRSTPEM-WP---DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 42 ~~~sG~~Hy~R~~~~~-W~---d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (844)
+.+++..|+...|... .+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5688888887754322 22 3455444799999999443 4444 7889999999997765445554
Q ss_pred ccc---------cccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 118 YVC---------AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 118 Yic---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
..+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999986200 0122334455666777777777776
No 101
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=62.41 E-value=74 Score=33.96 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=37.9
Q ss_pred ecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
+.|-+.+ ++++|++++++|++.|++. . | + ..+++++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 4444444 7889999999999999993 2 1 1 13799999999999999854
No 102
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=62.38 E-value=16 Score=41.03 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=58.0
Q ss_pred EEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCce-eeecCcchHHHHHHHHHHcCcEEEEecCccccc
Q 003147 43 LISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (844)
Q Consensus 43 ~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~GL~VilrpGPYica 121 (844)
.+|=++.+.|.+.+.=..-|++|...|+..|-| ++|.|.+.. --|. -+..+++.|+++||+||+-.-|-|.-
T Consensus 3 ~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 3 MLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred ceeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 356678888888888888999999999988766 678877542 1122 68899999999999999998887654
Q ss_pred c
Q 003147 122 E 122 (844)
Q Consensus 122 E 122 (844)
|
T Consensus 76 ~ 76 (360)
T COG3589 76 E 76 (360)
T ss_pred h
Confidence 4
No 103
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=62.10 E-value=26 Score=46.20 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=66.1
Q ss_pred eEEECCEEeEE---EEEEecCCCC--CcccHHHHHHHHHhCCCCEEEE-ccc-cCc-cCC--CCceee----e----cCc
Q 003147 33 AVVIGGKRRVL---ISGSIHYPRS--TPEMWPDLIQKSKDGGLDVIET-YVF-WNL-HEP--VRNQYN----F----EGR 94 (844)
Q Consensus 33 ~f~ldG~~~~~---~sG~~Hy~R~--~~~~W~d~l~k~ka~GlN~V~~-yv~-Wn~-hEp--~~G~~d----F----~g~ 94 (844)
.+.|||+.++. ++-.-...++ +-+.|+++|..+|++|+|+|-. .++ =.. ..| ....+. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45566622222 2223334554 5578999999999999999985 444 110 000 112221 3 356
Q ss_pred chHHHHHHHHHHc-CcEEEEecCcccccccCCCCC-CcccccCCCeeeccCChhhHHHH
Q 003147 95 YDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKAEM 151 (844)
Q Consensus 95 ~dl~~fl~la~~~-GL~VilrpGPYicaEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~v 151 (844)
.|+.++++.|++. ||++|+-. | |+-=+- =.||.++|+.-....+.+||+++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 7899999999996 99999863 1 222221 24888777644444444555443
No 104
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.70 E-value=54 Score=35.19 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCCEEEEccccCccCCCCcee-eecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCC
Q 003147 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY-NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIP 136 (844)
Q Consensus 58 W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~-dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p 136 (844)
-++.|+++.++|++.|+.. ..+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3478999999999999993 333322100 222 236899999999999986542 3432
Q ss_pred CeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecc
Q 003147 137 GIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (844)
Q Consensus 137 ~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~Q 179 (844)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777777777665 23 55666554
No 105
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=61.48 E-value=13 Score=44.74 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEc-cccCccCCCCcee--------eecCc----chHHHHHHHHHHcCcEEEEecCcccccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQY--------NFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~y-v~Wn~hEp~~G~~--------dF~g~----~dl~~fl~la~~~GL~VilrpGPYicaE 122 (844)
+.=++.|.+|+..-||.|+.| ..|.+|.|-|+.= |+.|+ .-+...|+.|++.|+.++.=--=|-.-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456778999999999999999 7899999976533 23332 2578999999999999885432232222
Q ss_pred c--CCCCCCccccc
Q 003147 123 W--NFGGFPLWLHF 134 (844)
Q Consensus 123 w--~~GG~P~WL~~ 134 (844)
. ..|=.|.|.+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667888763
No 106
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=61.12 E-value=7.1 Score=39.68 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=28.6
Q ss_pred CCceEEEEECCeeccccccccccCCCCCCCCCCccCCcCccccccCCCCccceeeecCccccccCCceEEEEEeeC
Q 003147 643 GMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIG 718 (844)
Q Consensus 643 g~gKG~vwVNG~nlGRYW~~~i~~~~g~~~~c~y~g~~~~~~c~~~c~gPqqtlYhVP~~~Lk~g~N~ivvfE~~~ 718 (844)
.-++=+|.||| -.+..+....+ .++|-||+.-. ++..+.--+-||+..|++|.|+|.|=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~-----~d~~~~r~g~~-------~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG-----NDNAIYRSGIH-------RGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE----------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccC-----CCCceeeCcee-------cccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 44666999999 66766632222 14566665521 112344445699999999999986643333
No 107
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=60.46 E-value=42 Score=38.55 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=66.0
Q ss_pred CCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCe----eeccC-ChhhHHHHHHHHHHH
Q 003147 84 PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRTD-NEPFKAEMQRFTAKI 158 (844)
Q Consensus 84 p~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~----~~R~~-d~~y~~~v~~~~~~l 158 (844)
+..|.|||+.+..=..||+.|++.|...++-. .--.|.|+...... ...++ -+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 45799999987777789999999999987653 23478888763210 00011 244566777777777
Q ss_pred HHHHhhcccccccCCceEeccccccccccccc--------cC-cccHHHHHHHHHHHhhcCCCcceEeccC
Q 003147 159 VDMMKQEKLYASQGGPIILSQIENEYGNIDSA--------YG-AAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (844)
Q Consensus 159 ~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~--------~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 220 (844)
+++++.+ |=+|=-+--=||.... +. +. +.....++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 7777533 3244444455888632 11 11 1235778889999999999876665554
No 108
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.28 E-value=15 Score=40.99 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=51.8
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCc--eeeecCcc--hHHHHHHHHHHcCcEEEEecCccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYV 119 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G--~~dF~g~~--dl~~fl~la~~~GL~VilrpGPYi 119 (844)
+|..|+ ..+.-++.++++++.||..=.+.+-|.... ..+ .|+|+-.+ |..++++..++.|++|++..=|+|
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 344454 455678899999999888766655555443 234 77776543 899999999999999998776666
No 109
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=60.21 E-value=15 Score=43.64 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=83.1
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCC---CceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~---~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~ 133 (844)
.++++++.||++|+++-|.-|.|+-.=|. .+.-+-.|..-...+|+...++|+..++-.= =| .+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cC---CCCHHHH
Confidence 58999999999999999999999987774 3567888888889999999999999765431 13 4788887
Q ss_pred c-CCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecc
Q 003147 134 F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (844)
Q Consensus 134 ~-~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~Q 179 (844)
+ ..+-.-+..=.+|+++++--|+++..++| .+..-|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 34432222335688888888888888887 34333555555554
No 110
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=60.08 E-value=15 Score=44.69 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHhCCCCEEEE-ccc-------cCccCCCCcee----eecCcchHHHHHHHHHHcCcEEEEe
Q 003147 55 PEMWPDLIQKSKDGGLDVIET-YVF-------WNLHEPVRNQY----NFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~-yv~-------Wn~hEp~~G~~----dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
.+.=.+.|.-+|+||+++|+. .|. |.+.-- |-| .|..-.||.+||+.|+++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344456788999999999996 232 544211 111 2333469999999999999999986
No 111
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=59.65 E-value=16 Score=39.30 Aligned_cols=53 Identities=8% Similarity=0.264 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCc
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (844)
....++-|+..|+.||++|++ ..|..+++ ..+..++++.+++.||.|+--.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 366778888999999999998 56666665 347889999999999999988764
No 112
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.46 E-value=6.2 Score=36.45 Aligned_cols=17 Identities=47% Similarity=0.499 Sum_probs=12.9
Q ss_pred CcchhhHHHHHHHHHHH
Q 003147 1 MASKEILLLVLCWGFVV 17 (844)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (844)
|++|.+|||.|+++++|
T Consensus 1 MaSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALL 17 (95)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 99999888777665555
No 113
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.32 E-value=27 Score=38.20 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=58.2
Q ss_pred EEECCEEeEEEEE--EecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeec--CcchHHHHHHHHHHcCc
Q 003147 34 VVIGGKRRVLISG--SIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE--GRYDLVKFVKLVAEAGL 109 (844)
Q Consensus 34 f~ldG~~~~~~sG--~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~la~~~GL 109 (844)
+.+.|.+++++.| ++| +++.-.+.-+++|++|+..++.|.+=+-.. -+.|. |...+..+-+.+++.||
T Consensus 21 ~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 21 VVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNL 92 (266)
T ss_pred EEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCC
Confidence 6677678888888 233 567778889999999999999998874333 33565 56789999999999999
Q ss_pred EEEEec
Q 003147 110 YAHLRI 115 (844)
Q Consensus 110 ~Vilrp 115 (844)
.++-.|
T Consensus 93 ~~~te~ 98 (266)
T PRK13398 93 PVVTEV 98 (266)
T ss_pred CEEEee
Confidence 988775
No 114
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.51 E-value=18 Score=40.83 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=55.6
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcc--hH--HHHHHHHHHcCcEEEEecCcccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DL--VKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~--dl--~~fl~la~~~GL~VilrpGPYic 120 (844)
+|..|+ ..+..++.++++++.||..=.+.+-+.+++. .+.|.|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 4667889999999999986665555444433 4677776543 77 99999999999999998888887
Q ss_pred cc
Q 003147 121 AE 122 (844)
Q Consensus 121 aE 122 (844)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 115
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.33 E-value=19 Score=40.08 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC-----CCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-----VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp-----~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
..+..++.++++|+.||..=.+.+-+.++.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566788999999999876555554333332 2356766543 38999999999999999998766663
No 116
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=57.26 E-value=31 Score=34.95 Aligned_cols=91 Identities=19% Similarity=0.340 Sum_probs=41.8
Q ss_pred eeEEeCCcceEEEEEECCEEEEEEe----ccCCCcee---EEeeeeccCCCccEEEEEEeecCcc---ccC---CCCccc
Q 003147 500 TVLHVQSLGHALHAFINGKLVGSGY----GSSSNAKV---TVDFPIALAPGKNTFDLLSLTVGLQ---NYG---AFYEKT 566 (844)
Q Consensus 500 ~~L~v~~~~D~a~Vfvng~~~G~~~----~~~~~~~~---~~~~~i~l~~g~~~L~iLven~Gr~---NyG---~~~~~~ 566 (844)
..|.|... .+..+||||+.||.-. ...-.+.. ++.+.--|+.|.|.|.+++-+-... .++ ......
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~~~~ 84 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYNGRIGFGGFPRARYGG 84 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S----------BTTB--
T ss_pred EEEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccccccccccccccccCC
Confidence 45665544 3668999999998643 11101111 3333334677999999999774433 111 111124
Q ss_pred CcCcccceEe---ccCCCCccccCccCCcEE
Q 003147 567 GAGITGPVQL---KGSGNGTNIDLSSQQWTY 594 (844)
Q Consensus 567 ~KGI~g~V~l---~g~~~g~~~~L~~~~W~~ 594 (844)
..++...+.| +|.. ...-++..|+.
T Consensus 85 ~~~l~~~l~i~~~DG~~---~~i~TD~sW~~ 112 (172)
T PF08531_consen 85 RPALLAQLEITYADGTT---EVIVTDESWKC 112 (172)
T ss_dssp --EEEEEEEE---TTEE---EE-E-STTSEE
T ss_pred CceeEEEEEEEecCCCE---EEeccCCCeee
Confidence 5566655555 3432 11235667874
No 117
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=56.20 E-value=21 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=33.2
Q ss_pred eeEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeecc-CCCccEEEEEEeecCcc
Q 003147 500 TVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIAL-APGKNTFDLLSLTVGLQ 557 (844)
Q Consensus 500 ~~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l-~~g~~~L~iLven~Gr~ 557 (844)
..|++.+-...++-||||+++|..... ..+. ..+ ..|.++|.+ +-..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCC---CeEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 356655556699999999999876532 1222 234 568888877 5566653
No 118
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=54.75 E-value=17 Score=42.32 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=15.3
Q ss_pred CCCCCCCCcceEEEEEE
Q 003147 826 FGDPCKGVMKSLAVEAS 842 (844)
Q Consensus 826 FgDPCpgt~KYL~V~Y~ 842 (844)
|-|||||--|-|+|.|+
T Consensus 502 Fydpc~ge~K~L~I~Yt 518 (546)
T KOG0718|consen 502 FYDPCPGEPKELEIVYT 518 (546)
T ss_pred ccCCCCCCccEEEEEEE
Confidence 33999999999999997
No 119
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=54.64 E-value=5 Score=42.63 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
-...+++.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5578899999999999999997766554444444 8999999999999999998
No 120
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=53.86 E-value=22 Score=40.06 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=53.7
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcc--hHHHHHHHHHHcCcEEEEecCcccccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~GL~VilrpGPYicaE 122 (844)
+|..|. ..++-++.++++++.||..=.+.+-+.+. ...+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 345554 45567888999999999866655443322 345667776433 899999999999999999988888753
No 121
>PLN02361 alpha-amylase
Probab=53.58 E-value=27 Score=40.50 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCEEEEccccC---ccCCCCce-ee----ecCcchHHHHHHHHHHcCcEEEEec
Q 003147 59 PDLIQKSKDGGLDVIETYVFWN---LHEPVRNQ-YN----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn---~hEp~~G~-~d----F~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+.|.-++++|+++|-+.=+.. .|--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4467778999999998753322 22212222 22 3445799999999999999999864
No 122
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=52.91 E-value=23 Score=39.51 Aligned_cols=72 Identities=7% Similarity=0.111 Sum_probs=52.2
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
+|..|+ ..+..++.++++++.+|..=.+.+-+.... .-+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 345554 566678999999999988655554433222 3466777543 38999999999999999988877775
No 123
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=51.48 E-value=18 Score=39.20 Aligned_cols=85 Identities=6% Similarity=-0.107 Sum_probs=61.6
Q ss_pred CCCCCceEEecCCCCceEEEEeeeecCCCC---CCCCCC----CCCcccCCchHHHHHHHccCCCceEEeecCCcCCCCC
Q 003147 758 RKPGPVLSLECPNPNQVISSIKFASFGTPL---GTCGSF----SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDPC 830 (844)
Q Consensus 758 ~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~---~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~FgDPC 830 (844)
.|..+.+...|+ ....+ .+..+.+++.+ ..|+.. -.-.|....++..+...|.+++.|.+..++.-++-+|
T Consensus 139 ~~~p~~~~~~~~-~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~~~~ 216 (265)
T KOG4729|consen 139 FCTPSPTDPPRS-EIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGHCRH 216 (265)
T ss_pred EecCCCCCCccC-cccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCccccccc
Confidence 477777788888 66666 57788888762 345431 1223334566777889999999999999999998888
Q ss_pred CCC-cceEEEEEEeC
Q 003147 831 KGV-MKSLAVEASCT 844 (844)
Q Consensus 831 pgt-~KYL~V~Y~C~ 844 (844)
-.. -+|+-|.+.|+
T Consensus 217 ~~~~~~~~~~n~e~~ 231 (265)
T KOG4729|consen 217 GHLHKVYVTVTEEIF 231 (265)
T ss_pred cceeEEEEEeccccc
Confidence 544 58999888774
No 124
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=50.28 E-value=20 Score=40.97 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=71.8
Q ss_pred HHhhccCCeeEEEccceEEECCEEeEEEEEEecCCC-CCcccHHHHHHHHHhC-CCCEEEEccccCccCCCCceeeecCc
Q 003147 17 VLATTSFGANVTYDHRAVVIGGKRRVLISGSIHYPR-STPEMWPDLIQKSKDG-GLDVIETYVFWNLHEPVRNQYNFEGR 94 (844)
Q Consensus 17 ~~~~~~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~R-~~~~~W~d~l~k~ka~-GlN~V~~yv~Wn~hEp~~G~~dF~g~ 94 (844)
+.+.|.+...|-.-+-+|-+.-.+-...+=|+.|+- .|.+.|+-+|..+.++ -=||+.+-| =|=+.|--++|+-.
T Consensus 143 i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~-- 219 (447)
T KOG0259|consen 143 ISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED-- 219 (447)
T ss_pred HHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH--
Confidence 334445566666666666666665555666666655 5888999999999987 788998855 47788888999877
Q ss_pred chHHHHHHHHHHcCcEEEEe
Q 003147 95 YDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilr 114 (844)
.|.+.+++|+++|+-||.-
T Consensus 220 -HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 220 -HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred -HHHHHHHHHHHhCCeEEeh
Confidence 8999999999999988863
No 125
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=50.08 E-value=56 Score=35.68 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=68.0
Q ss_pred eEEEEEEecCCCCCcccH----HHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEE--EEe
Q 003147 41 RVLISGSIHYPRSTPEMW----PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLR 114 (844)
Q Consensus 41 ~~~~sG~~Hy~R~~~~~W----~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr 114 (844)
.+.+++..|+.+.|.... .++|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 478899998876543322 2456667789999998833 34544 7899999999997664 444
Q ss_pred cCccc-------ccccCCCCCCcccccCCCeeeccCC-hhhHHHHHHHHHHHHHHHh
Q 003147 115 IGPYV-------CAEWNFGGFPLWLHFIPGIQFRTDN-EPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 115 pGPYi-------caEw~~GG~P~WL~~~p~~~~R~~d-~~y~~~v~~~~~~l~~~~~ 163 (844)
.-|-. .++|..-.+|.|+.+.=. +. .++ ...+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~-~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KY-DDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44422 223666678888875200 01 123 3455666667777776665
No 126
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.08 E-value=34 Score=38.18 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCC---CCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEP---VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp---~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
+.-++.++++++.||..=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999987666554333322 1234666433 38999999999999999998877774
No 127
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=49.92 E-value=23 Score=46.66 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCEEEE-ccccCccCCC---Cce-----ee----------ec--CcchHHHHHHHHHHcCcEEEEec
Q 003147 60 DLIQKSKDGGLDVIET-YVFWNLHEPV---RNQ-----YN----------FE--GRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~-yv~Wn~hEp~---~G~-----~d----------F~--g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+.|.-+|++|+|+|++ .|+=+..|.. .|. || |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 3566899999999996 4553222211 110 21 23 56789999999999999999874
No 128
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=49.77 E-value=86 Score=31.41 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred cHHHHHHHHHhCCCCEEEEccc--cCccCC----CCceeeecCcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCC
Q 003147 57 MWPDLIQKSKDGGLDVIETYVF--WNLHEP----VRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFP 129 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~--Wn~hEp----~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P 129 (844)
.-++..+.+++.|+..+....+ |..... .+.. .-.....+.+.+++|++.|...+ +-+|.
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~------------ 94 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR------------ 94 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT------------
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc------------
Confidence 4556677888999997765444 443211 1111 11123479999999999999865 44432
Q ss_pred cccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccccccccc
Q 003147 130 LWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNI 187 (844)
Q Consensus 130 ~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~ 187 (844)
|-.. + ......-++.+.+.++++.++.+++ | +.+-+||..+..
T Consensus 95 -~~~~-~----~~~~~~~~~~~~~~l~~l~~~a~~~------g---v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 -YPSG-P----EDDTEENWERLAENLRELAEIAEEY------G---VRIALENHPGPF 137 (213)
T ss_dssp -ESSS-T----TSSHHHHHHHHHHHHHHHHHHHHHH------T---SEEEEE-SSSSS
T ss_pred -cccc-c----CCCHHHHHHHHHHHHHHHHhhhhhh------c---ceEEEecccCcc
Confidence 1000 0 1123456677778888888888743 2 445688888753
No 129
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.59 E-value=31 Score=43.70 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHhCCCCEEEE-ccccCccCCCCc------eee-------ecCcchHHHHHHHHHHcCcEEEEecCc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRN------QYN-------FEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~-yv~Wn~hEp~~G------~~d-------F~g~~dl~~fl~la~~~GL~VilrpGP 117 (844)
+-+-|.+.|.-++++|+|+|-+ .++ +..+| ..| |.+..++.+|++.|+++||.||+-.=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4556899999999999999986 332 11122 112 346689999999999999999987644
No 130
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=48.91 E-value=86 Score=35.39 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=55.9
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcc--hHHHHHHHHHHcCcEEEEecCcccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~GL~VilrpGPYic 120 (844)
+|..|+ ..++.++.++++++.+|-.=.+++-|.+++ .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455564 567788899999999998666666665554 34677776543 8899999999999999998888887
No 131
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=48.69 E-value=36 Score=37.70 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=41.5
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccC---ccCCCCce--------eeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWN---LHEPVRNQ--------YNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn---~hEp~~G~--------~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+..-.++++.+|..|+|++-+-+-=. +.=|.... =.| .|+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 455668899999999999987643211 11111111 123 399999999999999999996
No 132
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=48.54 E-value=34 Score=43.12 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=44.4
Q ss_pred CcccHHHHHHHHHhCCCCEEEE-ccccC----ccCCCC---c--eeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIET-YVFWN----LHEPVR---N--QYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~-yv~Wn----~hEp~~---G--~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
+-+-|.+.|.-++++|+++|-+ .|+=+ .|--.. . .-.|.+..++.+|++.|+++||.||+-.=
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3455889999999999999976 34311 111100 0 12355778999999999999999998753
No 133
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=48.40 E-value=31 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=51.4
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
+|..|. ..+..++.++++++.||..=.+.+-+.+.. .-+.|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455554 456678899999999988654444433333 3455666543 37899999999999999988877775
No 134
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=48.28 E-value=25 Score=43.57 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCEEEE-ccccCccC---CCCc-----ee---e-------e---cCcchHHHHHHHHHHcCcEEEEec
Q 003147 61 LIQKSKDGGLDVIET-YVFWNLHE---PVRN-----QY---N-------F---EGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 61 ~l~k~ka~GlN~V~~-yv~Wn~hE---p~~G-----~~---d-------F---~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.|.-+|++|+|+|.+ .|+=...+ ...| -| | | ....+|.+|++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 45411111 1111 01 1 1 124689999999999999999874
No 135
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.22 E-value=37 Score=37.41 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC--------CCceeeecCc--chHHHHHHHHHHcCcEEEEecCc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--------VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp--------~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGP 117 (844)
+.+.-++.++++|+.||..=-+++-...|.- .-+.|.|+-. -|..++++..++.|++|++..=|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 5666788999999999986666554333331 2356777643 39999999999999999987644
No 136
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=47.18 E-value=4.6 Score=48.62 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=61.3
Q ss_pred ccccccccCCCCcccccccCcCCCCCCCceEEecCCCCceEEEEeeeecCCCCCCCCCCCCCcccCCchHHHHHHHccCC
Q 003147 735 LCSHVTDSHPLPVDMWGSDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGS 814 (844)
Q Consensus 735 lC~~~~~~~~~~~~~~~~~~~~~~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk 814 (844)
+|.+..+.|..+. ...+.|.+++.++.+|..|.||..++.|+.+....|.++++.-.+...|-.+
T Consensus 313 l~~~pk~ghlk~~---------------hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~ 377 (649)
T KOG0496|consen 313 LLRQPKYGHLKPL---------------HTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRL 377 (649)
T ss_pred hhcCCCccccccc---------------hhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCcccc
Confidence 7887777777421 1233344378888889999999998899999888999999999999999999
Q ss_pred CceEEeecCCcC
Q 003147 815 KSCSIGVSVNTF 826 (844)
Q Consensus 815 ~~C~v~a~~~~F 826 (844)
..|+|....+.+
T Consensus 378 ~~~slsilpdck 389 (649)
T KOG0496|consen 378 PPWSLSILPDCK 389 (649)
T ss_pred CceeEEechhhc
Confidence 999999876544
No 137
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=46.55 E-value=35 Score=37.03 Aligned_cols=49 Identities=27% Similarity=0.217 Sum_probs=37.5
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
..++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 46799999999999 788887777633 23344444449999999999987
No 138
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=46.41 E-value=21 Score=30.43 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=26.7
Q ss_pred eEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeeeccCCCccEEEEEEeecCcccc
Q 003147 501 VLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNY 559 (844)
Q Consensus 501 ~L~v~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~iLven~Gr~Ny 559 (844)
.|.|.+.=.-|.|||||+++|... ..+. .++.|.++|. ++.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~--v~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVT--VEKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEE--EEECCCeeE
Confidence 344544444589999999999431 1111 2456765554 455554443
No 139
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=46.37 E-value=1.5e+02 Score=33.40 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=28.8
Q ss_pred ccceEEECCEEeEEEEEEecCCCCCcccHHHHH-HHHHhCCCCEEEE
Q 003147 30 DHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLI-QKSKDGGLDVIET 75 (844)
Q Consensus 30 d~~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l-~k~ka~GlN~V~~ 75 (844)
|.+.+.|||||+++|=..-.- .....+-+.+ +.+|++|+.-+-+
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~--pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDI--PDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECcccc--cCHHHHHHHHHHHHHHcCCCceEE
Confidence 778899999999988655222 1222333444 4568899995554
No 140
>PRK14565 triosephosphate isomerase; Provisional
Probab=46.09 E-value=74 Score=34.30 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCC--------------
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGG-------------- 127 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG-------------- 127 (844)
..++|++|++.|-+ -|..++-.|+=+ +..+.+=++.|.++||.+|++.|=.. -|.+.|-
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE~~-e~r~~~~~~~~~~~Ql~~~l~ 150 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVGETL-EDRENGMTKDVLLEQCSNCLP 150 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHccChHHHHHHHHHHHhc
Confidence 46799999999998 777777666544 22333334899999999999999543 1122222
Q ss_pred ------C---CcccccCCCeeeccCChhhHHHHHHHHHHH
Q 003147 128 ------F---PLWLHFIPGIQFRTDNEPFKAEMQRFTAKI 158 (844)
Q Consensus 128 ------~---P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l 158 (844)
+ |.|.-.. + ++.+|.+.+++.+++++.
T Consensus 151 ~~~~ivIAYEPvWAIGt-G---~~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 151 KHGEFIIAYEPVWAIGG-S---TIPSNDAIAEAFEIIRSY 186 (237)
T ss_pred CCCCEEEEECCHHHhCC-C---CCCCHHHHHHHHHHHHHh
Confidence 1 6666542 2 367899988888888775
No 141
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=45.95 E-value=36 Score=46.03 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc-cccCccCCCCce---e----------eecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQ---Y----------NFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~y-v~Wn~hEp~~G~---~----------dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
+-+-|.+.|.-+|++|+|+|-+- |+ +..+|. | .|.+..|+.+|++.|+++||.|||-.=
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 55669999999999999999863 33 222221 1 245677999999999999999998753
No 142
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=45.89 E-value=27 Score=40.53 Aligned_cols=70 Identities=10% Similarity=0.263 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccccccC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYicaEw~ 124 (844)
..+..++.++.+++.|+-.=.+.+-..+.. ..+.|.|+.. -|+..+++..++.|++|++..-|+|.-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466678899999999998766665533333 4445555533 289999999999999999998888765543
No 143
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=45.40 E-value=33 Score=44.73 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003147 95 YDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilrp 115 (844)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999874
No 144
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=45.25 E-value=18 Score=30.47 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=27.5
Q ss_pred CcchhhHHHHHHHHHHHHhhcc----CCeeEEEccceEEECCEEeEEEEEEec
Q 003147 1 MASKEILLLVLCWGFVVLATTS----FGANVTYDHRAVVIGGKRRVLISGSIH 49 (844)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~d~~~f~ldG~~~~~~sG~~H 49 (844)
||+|.+++-|||++++...-++ ++..=+||.+.+ |..++..-+-+.|
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~YDEdd~--dde~l~phsss~~ 51 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPSYDEDDD--DDEPLKPHSSSIT 51 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCCcCcccC--cccccccCCCCCC
Confidence 9999999999988876633222 344456665533 3344444443333
No 145
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.06 E-value=1e+02 Score=34.22 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc----cCcc-CCC--CceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLH-EPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~h-Ep~--~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
+.++-++.++.|...|+|.+..|+- +.-+ |-. +|.|. ..++.++++.|++.|+.||..+-
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCC
Confidence 3567788999999999999998753 3222 111 33333 34999999999999999997653
No 146
>PRK03705 glycogen debranching enzyme; Provisional
Probab=43.89 E-value=35 Score=42.07 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHhCCCCEEEE-ccccCccCCCC---c-----eee----------ecC-----cchHHHHHHHHHHcCcEEEEec
Q 003147 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-----QYN----------FEG-----RYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 61 ~l~k~ka~GlN~V~~-yv~Wn~hEp~~---G-----~~d----------F~g-----~~dl~~fl~la~~~GL~Vilrp 115 (844)
.|.-+|++|+|+|++ .|+=...++.. | -|| |.. ..+|.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488899999999996 44321111110 1 011 222 1479999999999999999874
No 147
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=43.74 E-value=42 Score=36.20 Aligned_cols=49 Identities=31% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
..++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 45799999999999 777777666644 56888899999999999999987
No 148
>PRK12677 xylose isomerase; Provisional
Probab=43.73 E-value=2.1e+02 Score=33.10 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=53.3
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeec---CcchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccc
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWL 132 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~Vi-lrpGPYicaEw~~GG~P~WL 132 (844)
-+++++++++++|+..|+.. .+..--|+.+ -.+.++++.+++++.||.|. +-|.-|....+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999983 1111112211 11358999999999999976 44321111111111
Q ss_pred ccCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334567666766666666665554
No 149
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=43.14 E-value=1.2e+02 Score=37.57 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhCCCCEEE---------------EccccCccCCCCceee-ecCcchHHHHHHHHHHcCcEEEEecCcccc
Q 003147 57 MWPDLIQKSKDGGLDVIE---------------TYVFWNLHEPVRNQYN-FEGRYDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~---------------~yv~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
.-...|+.+|++|+|||- .|++| -|= ||+-| |+ .-...++.+.|+.|..+-.||-.
T Consensus 335 ~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f~-----~~aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 335 NIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLFN-----RVAWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCcC-----HHHHHHHHhhCCEEEEeccceee
Confidence 356689999999999996 46677 333 34443 22 11355689999999999999852
Q ss_pred c---------ccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccc
Q 003147 121 A---------EWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (844)
Q Consensus 121 a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy 184 (844)
. +++..+-|.... |+--.| -.+|..++++|+..|.+-|+.+ .+|=++|...+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 1 121111121111 100012 2346788999999999888853 246666654443
No 150
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=39.15 E-value=69 Score=36.29 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=57.4
Q ss_pred eEEECCEEeEEEEEEecCCCC-CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecC--cchHHHHHHHHHHcCc
Q 003147 33 AVVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKLVAEAGL 109 (844)
Q Consensus 33 ~f~ldG~~~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~GL 109 (844)
.+.+.|.++.++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+.+++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36777788888888 2222 56667778888999999999999985 4444467775 4567777778899999
Q ss_pred EEEEec
Q 003147 110 YAHLRI 115 (844)
Q Consensus 110 ~Vilrp 115 (844)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988765
No 151
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.01 E-value=81 Score=35.28 Aligned_cols=62 Identities=10% Similarity=0.164 Sum_probs=45.3
Q ss_pred cCCCCCcccHHHHHHHHHhCCCCEEEEccc--cCcc---CC------------------------CCceeeecCcchHHH
Q 003147 49 HYPRSTPEMWPDLIQKSKDGGLDVIETYVF--WNLH---EP------------------------VRNQYNFEGRYDLVK 99 (844)
Q Consensus 49 Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~--Wn~h---Ep------------------------~~G~~dF~g~~dl~~ 99 (844)
||+ +.+..++.|+.|...++|++..++- |.+- .| ..|.|. ..|+.+
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~e 86 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKE 86 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHH
Confidence 554 6888999999999999999997653 3321 11 112232 349999
Q ss_pred HHHHHHHcCcEEEEec
Q 003147 100 FVKLVAEAGLYAHLRI 115 (844)
Q Consensus 100 fl~la~~~GL~Vilrp 115 (844)
+++.|++.|+.||..+
T Consensus 87 iv~yA~~rgI~vIPEI 102 (326)
T cd06564 87 LIAYAKDRGVNIIPEI 102 (326)
T ss_pred HHHHHHHcCCeEeccC
Confidence 9999999999998653
No 152
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=38.81 E-value=52 Score=35.91 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=40.1
Q ss_pred chhhhcCC---CCCcceEEEEEEeecCCCCccccCCCceeEEeCCcceEEEEEECCEEE
Q 003147 465 LLEQINTT---ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLV 520 (844)
Q Consensus 465 ~~Eql~~t---~d~~gYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~~ 520 (844)
.+-++++. .|-+|.+||+.++.++.+.. .-.+++..|++.+.|-.|.|+|||.-+
T Consensus 73 s~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 73 SFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred chhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceee
Confidence 34555443 45689999999998865431 123455689999999999999999865
No 153
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=38.80 E-value=55 Score=36.84 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=52.5
Q ss_pred ceEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccc----cCccCCC------Cceee--------ecC
Q 003147 32 RAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHEPV------RNQYN--------FEG 93 (844)
Q Consensus 32 ~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~hEp~------~G~~d--------F~g 93 (844)
++|+||=-| ||+ +.+..++.|+.|...++|+...++- |.+.-+. .|.+. |=-
T Consensus 4 RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT 73 (329)
T cd06568 4 RGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT 73 (329)
T ss_pred cceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC
Confidence 456666444 443 7788999999999999999998874 6544221 22221 111
Q ss_pred cchHHHHHHHHHHcCcEEEEec
Q 003147 94 RYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 94 ~~dl~~fl~la~~~GL~Vilrp 115 (844)
..|+.++++.|++.|+.||..+
T Consensus 74 ~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 74 QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHHHcCCEEEEec
Confidence 3599999999999999999754
No 154
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=38.20 E-value=60 Score=34.18 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=36.7
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
..++|++|++.|-+ -|..++ |..+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45799999999998 666666 5545 69999999999999999987
No 155
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=38.20 E-value=13 Score=32.89 Aligned_cols=38 Identities=21% Similarity=0.513 Sum_probs=27.4
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG 108 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G 108 (844)
....|-.-|+.+-. .||.|-.|||. +|.+||++|.|.-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTp 57 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTP 57 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCC
Confidence 34568877777654 48999999999 9999999998843
No 156
>PRK09267 flavodoxin FldA; Validated
Probab=37.55 E-value=1.6e+02 Score=29.22 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=48.6
Q ss_pred ECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 36 ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
++.-..++++...|+...++..|.+-|.+++...++-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556789999999878888999999998888777777776662 221111001121 235666777888896654
No 157
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.37 E-value=48 Score=36.12 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEEccccC--ccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 59 PDLIQKSKDGGLDVIETYVFWN--LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn--~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVC 175 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEE
Confidence 6789999999999998875511 112211223444 56677899999999864
No 158
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.30 E-value=1.5e+02 Score=29.32 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCEEEEccccCccCCCCceeeecCcc--hHHHHHHHHHHcCcEEEE
Q 003147 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 61 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~la~~~GL~Vil 113 (844)
.++.+.|.+-.||+|-.+|- .|.-.|+|.+ +|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 36678889999999999995 5677788864 5656666 6666777764
No 159
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=36.82 E-value=94 Score=26.00 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
..++.++++|+.|++.|.+ .-|. ++. ...+|.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999986 1222 233 3678889999999988753
No 160
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=36.61 E-value=34 Score=38.06 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=46.5
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcE--EE-Eec
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--AH-LRI 115 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~--Vi-lrp 115 (844)
.|++.+.+++..|+ +|++.-+--..|..|+.|. |+.+.+++|...||. +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888889999999996 899999999999996 34 666
No 161
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=35.96 E-value=1e+02 Score=37.80 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=75.0
Q ss_pred CEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCc
Q 003147 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (844)
Q Consensus 38 G~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGP 117 (844)
+++-+.+++..|+++.+.+.=-++|++-.++|...+-|-.+++. + .+.+|++.+++.++.||...-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeee
Confidence 34557899999987765554445677777899999999655433 3 6888999888878888887776
Q ss_pred ccc--------cccCCCCCCcccccC-CCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 118 YVC--------AEWNFGGFPLWLHFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 118 Yic--------aEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
... .+|..-=+|.|+.+. .. .. +....+++--++..++++.+.
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 332 235445568888752 11 11 223567777777777777765
No 162
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=35.79 E-value=1.3e+02 Score=31.77 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=63.0
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeec-CcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcc
Q 003147 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLW 131 (844)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~W 131 (844)
..+..++..++.++++|+..+-+|..... ....|..+ |..|=..-+++|+++|+. +|- |-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~gs-----------~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----PGT-----------IIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----CCC-----------EEE
Confidence 36789999999999999999999987765 22233333 778999999999999982 222 223
Q ss_pred cccCCCeeeccCChhhHHHHHHHHHHHHHHHhh
Q 003147 132 LHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (844)
Q Consensus 132 L~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~ 164 (844)
+.-+.+. .+..+...+..||+.+...|..
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 3222221 2333677888888888888864
No 163
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=35.45 E-value=82 Score=35.00 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=58.5
Q ss_pred HHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCc--EEEEecCc--------ccccccCCCCCCc
Q 003147 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGL--YAHLRIGP--------YVCAEWNFGGFPL 130 (844)
Q Consensus 61 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL--~VilrpGP--------YicaEw~~GG~P~ 130 (844)
+|++-.++|-+.+.|-. .||.+ .+.+|++.|++.|+ .|++..-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 56666679999888833 34555 79999999999994 45655555 34 6777788999
Q ss_pred ccccCCCeeeccCC-hhhHHHHHHHHHHHHHHHh
Q 003147 131 WLHFIPGIQFRTDN-EPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 131 WL~~~p~~~~R~~d-~~y~~~v~~~~~~l~~~~~ 163 (844)
|+.+.=. +. .+| ...+++--++..++++.+.
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9986211 01 133 3355666677777777766
No 164
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.83 E-value=1.4e+02 Score=33.99 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccc----cCccCC----------------------------CCceeeecCcchHHHH
Q 003147 53 STPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP----------------------------VRNQYNFEGRYDLVKF 100 (844)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~hEp----------------------------~~G~~dF~g~~dl~~f 100 (844)
++.+..++.|..|...++|+...++. |.+--+ ..|.|- ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36888999999999999999998763 432211 123343 3499999
Q ss_pred HHHHHHcCcEEEEec
Q 003147 101 VKLVAEAGLYAHLRI 115 (844)
Q Consensus 101 l~la~~~GL~Vilrp 115 (844)
++.|++.|+.||.-+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999754
No 165
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.74 E-value=73 Score=36.03 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=49.9
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEcc----------ccCccCCC---------CceeeecC-c--chHHHHHH
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYV----------FWNLHEPV---------RNQYNFEG-R--YDLVKFVK 102 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv----------~Wn~hEp~---------~G~~dF~g-~--~dl~~fl~ 102 (844)
+|..|. ..+.-++.++++++.||..=-+++ .|+...-. =+.++|.. . -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 456678899999999998665544 24432211 13334432 1 28999999
Q ss_pred HHHHcCcEEEEecCcccc
Q 003147 103 LVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 103 la~~~GL~VilrpGPYic 120 (844)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998877774
No 166
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.70 E-value=47 Score=38.63 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCEEEE-ccc---cCccCCCCc---ee--eecCcchHHHHHHHHHHcCcEEEEe
Q 003147 60 DLIQKSKDGGLDVIET-YVF---WNLHEPVRN---QY--NFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~-yv~---Wn~hEp~~G---~~--dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
+.|.-+|.+|+++|-+ .++ -..|--..- +- .|.+..|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7888999999999964 232 112221100 00 5777889999999999999999975
No 167
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=34.61 E-value=1.1e+02 Score=30.07 Aligned_cols=89 Identities=11% Similarity=0.178 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeec---CcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~ 130 (844)
.+.+.++.++.|+++|+..+-+|.....+. ..|.-. |..|=..-+..|++.|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET---SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc---cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 578899999999999999999988772221 222221 567888999999999984 1 2222
Q ss_pred ccccCCCeeeccCChhhHHHHHHHHHHHHHHHhh
Q 003147 131 WLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (844)
Q Consensus 131 WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~ 164 (844)
++--+-+ ..+..+.+.+..||+.+...|..
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 3321111 24666777788888888887774
No 168
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=34.31 E-value=1.1e+02 Score=34.03 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc----cCccCC----------------CCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP----------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
+.+..++.|+.|...++|++..++- |.+--+ ..|.|.- .|+.++++.|++.|+.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 6778899999999999999999877 755321 1233443 4999999999999999997
Q ss_pred ec
Q 003147 114 RI 115 (844)
Q Consensus 114 rp 115 (844)
.+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 54
No 169
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=34.22 E-value=49 Score=29.60 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=25.7
Q ss_pred ccCCceEecccccc-ccccccccC-----cccHHHHHHHHHHHh---hcCCCcceE
Q 003147 170 SQGGPIILSQIENE-YGNIDSAYG-----AAGKSYIKWAAGMAL---SLDTGVPWV 216 (844)
Q Consensus 170 ~~gGpII~~QiENE-yg~~~~~~~-----~~~~~y~~~l~~~~~---~~g~~vp~~ 216 (844)
++...|.+|+|-|| .+.....+. .....|.+||+++++ +.+-+.|+.
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt 61 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVT 61 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 34567999999999 662211111 124567777777655 456666654
No 170
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=34.09 E-value=1.7e+02 Score=33.12 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=52.1
Q ss_pred ceEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccc----cCccCCC------Cceeeec---CcchHH
Q 003147 32 RAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHEPV------RNQYNFE---GRYDLV 98 (844)
Q Consensus 32 ~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~hEp~------~G~~dF~---g~~dl~ 98 (844)
++|+||=-| || ++.+..++.|+.|....+|+...++- |.+--+. .|.|.=. -..|+.
T Consensus 4 RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~ 73 (348)
T cd06562 4 RGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVK 73 (348)
T ss_pred cceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHH
Confidence 455555433 55 36788999999999999999998763 6554321 2322211 134999
Q ss_pred HHHHHHHHcCcEEEEec
Q 003147 99 KFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 99 ~fl~la~~~GL~Vilrp 115 (844)
.+++.|++.|+.||..+
T Consensus 74 eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 74 EIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHcCCEEEEec
Confidence 99999999999999754
No 171
>PLN02429 triosephosphate isomerase
Probab=33.91 E-value=71 Score=35.88 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHH----HHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKL----VAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~l----a~~~GL~VilrpG 116 (844)
..++|++|++.|-+ -|..++-.|.-+ ++++.. |.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Et-----d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEK-----DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcC-----HHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999998 677777666533 555555 9999999999987
No 172
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.27 E-value=71 Score=32.83 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=54.4
Q ss_pred EEEecCCCC-----CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeee--cC-cchHHHHHHHHHHcCcEEEEecC
Q 003147 45 SGSIHYPRS-----TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNF--EG-RYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 45 sG~~Hy~R~-----~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF--~g-~~dl~~fl~la~~~GL~VilrpG 116 (844)
-|.+||+|. +.++.+.-|+.++..++..= ..|--.|..++.+.- +- ...+.+|+++.+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 399999875 35667778888887655321 112233332343321 11 13678999999999999999888
Q ss_pred cccccc----c---CCCCCCcccccC
Q 003147 117 PYVCAE----W---NFGGFPLWLHFI 135 (844)
Q Consensus 117 PYicaE----w---~~GG~P~WL~~~ 135 (844)
++--.. . ++..+|.|+...
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 852111 1 145678898764
No 173
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=31.79 E-value=61 Score=36.72 Aligned_cols=111 Identities=18% Similarity=0.334 Sum_probs=0.0
Q ss_pred CEEEEccccCc---cCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhh
Q 003147 71 DVIETYVFWNL---HEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPF 147 (844)
Q Consensus 71 N~V~~yv~Wn~---hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y 147 (844)
+.|.+.|.|+. .-|. ...++.|+++|+.|+-- |.-||+ +-+.|+. .+-.++
T Consensus 31 ~yvD~fvywsh~~~~iPp------------~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~-----~lL~~~--- 84 (339)
T cd06547 31 QYVDTFVYFSHSAVTIPP------------ADWINAAHRNGVPVLGT----FIFEWT--GQVEWLE-----DFLKKD--- 84 (339)
T ss_pred hhhheeecccCccccCCC------------cHHHHHHHhcCCeEEEE----EEecCC--CchHHHH-----HHhccC---
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCceEeccccccc-cccccccCcccHHHHHHHHHHHhhc--CCCcceE
Q 003147 148 KAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY-GNIDSAYGAAGKSYIKWAAGMALSL--DTGVPWV 216 (844)
Q Consensus 148 ~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy-g~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~ 216 (844)
-+...++.++|++..+.+.+ .| +.+-+||.. .. .....-.+|++.|++.+++. +..|-|+
T Consensus 85 ~~~~~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~---~~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGF----DG--WLINIETELGDA---EKAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred cccchHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcH---HHHHHHHHHHHHHHHHHhhcCCCcEEEEE
No 174
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=31.67 E-value=72 Score=39.95 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=44.7
Q ss_pred cccHHHHHHHHHhCCCC--EEEEccccCccCCCCceeeecCc----chHHHHHHHHHHcCcEEEEecCccccc
Q 003147 55 PEMWPDLIQKSKDGGLD--VIETYVFWNLHEPVRNQYNFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN--~V~~yv~Wn~hEp~~G~~dF~g~----~dl~~fl~la~~~GL~VilrpGPYica 121 (844)
-+.-+|+.+.+++|||. ++-+-+.|. ++.=||+=+ .++..|++-.++.|+++++.+-|+|..
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~ 377 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIST 377 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCcccc
Confidence 34458899999999998 555555554 333344321 368999999999999999988777743
No 175
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=31.64 E-value=71 Score=40.86 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003147 95 YDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilrp 115 (844)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 478999999999999999864
No 176
>PLN02561 triosephosphate isomerase
Probab=31.51 E-value=84 Score=34.23 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=40.5
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
..++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45799999999999 777777776544 55677788899999999999987
No 177
>PRK15492 triosephosphate isomerase; Provisional
Probab=31.46 E-value=85 Score=34.31 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 787777777533 45667788899999999999987
No 178
>PLN02877 alpha-amylase/limit dextrinase
Probab=30.70 E-value=82 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003147 95 YDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 95 ~dl~~fl~la~~~GL~Vilrp 115 (844)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999874
No 179
>PTZ00333 triosephosphate isomerase; Provisional
Probab=30.41 E-value=93 Score=33.89 Aligned_cols=49 Identities=27% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
-.++|++|++.|-+ -|..++-.|.-+ +..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999999 788887777533 56788889999999999999987
No 180
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.19 E-value=3e+02 Score=29.88 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEE--EEecCcccccccCCCCCCcccccCC
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWLHFIP 136 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilrpGPYicaEw~~GG~P~WL~~~p 136 (844)
.+.++.+++.|+++|++++-. |+--....-...+.++|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 568999999999999996531 1111111112236888889999998863 33334553
Q ss_pred CeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 137 GIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 137 ~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
+.+-+.|+..+++..+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22335567777777777777666554
No 181
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.16 E-value=71 Score=39.67 Aligned_cols=54 Identities=28% Similarity=0.325 Sum_probs=40.5
Q ss_pred HHHHHhCCCCEEEE-ccccCccCCCC---c-----------------eeeecC-----cchHHHHHHHHHHcCcEEEEec
Q 003147 62 IQKSKDGGLDVIET-YVFWNLHEPVR---N-----------------QYNFEG-----RYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 62 l~k~ka~GlN~V~~-yv~Wn~hEp~~---G-----------------~~dF~g-----~~dl~~fl~la~~~GL~Vilrp 115 (844)
|.-+|.+|+++|+. .|+.-..|+.. | .|-=+. .+.+..+++.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999996 67765555543 2 232233 2478888999999999999974
No 182
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=30.07 E-value=2.2e+02 Score=31.91 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=71.6
Q ss_pred HHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCee
Q 003147 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQ 139 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~ 139 (844)
.++...++.|.+||=.- .+ - .=-||..+..+.+++.||.+|...|+|.-+.|+ .|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD~--------T~--~--~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVDA--------TN--I--GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEeeC--------Cc--c--ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 35677778899987531 10 0 112699999999999999999999999988885 6666433
Q ss_pred eccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHhhc-CCCcceEe
Q 003147 140 FRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL-DTGVPWVM 217 (844)
Q Consensus 140 ~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~ 217 (844)
++.+.+-+.+.+.. .+ .|+=|..=|=-|-|.+. .-.+.=.+-|+..+++. -.++|+.+
T Consensus 112 -----------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 -----------IEELAEFVVKEIEE-GI----AGTGIKAGIIKEAGGSP----AITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred -----------HHHHHHHHHHHHHh-cc----cCCccccceeeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 34444455555541 21 13323333334555432 12233345677777764 45678665
No 183
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.87 E-value=2.1e+02 Score=30.26 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHhCCCCE-EEE--ccccCccCC---CCc--eeeec-----------C--cchHHHHHHHHHHcCcEEEE
Q 003147 55 PEMWPDLIQKSKDGGLDV-IET--YVFWNLHEP---VRN--QYNFE-----------G--RYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~-V~~--yv~Wn~hEp---~~G--~~dF~-----------g--~~dl~~fl~la~~~GL~Vil 113 (844)
++.-.+.++++|+.|+.+ |+| |++|...+. .=. -+|+. | +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678999999999874 444 555532221 111 23332 2 22455667778888999988
Q ss_pred ecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccc---------cccc
Q 003147 114 RIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI---------ENEY 184 (844)
Q Consensus 114 rpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~Qi---------ENEy 184 (844)
|. |. .|++ ++++.-++++.+|++.+. +. ++ .++-++- .=+|
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~------~llpyh~~g~~Ky~~lg~~y 182 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QI------HLLPFHQYGEPKYRLLGKTW 182 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eE------EEecCCccchhHHHHcCCcC
Confidence 86 22 2664 356667777777776541 11 11 0111111 0022
Q ss_pred cccccccCcccHHHHHHHHHHHhhcCCCc
Q 003147 185 GNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (844)
Q Consensus 185 g~~~~~~~~~~~~y~~~l~~~~~~~g~~v 213 (844)
-.. .....+.+.|+.+++.+++.|+.+
T Consensus 183 ~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 183 SMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred ccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 111 123467889999999999998875
No 184
>PRK10426 alpha-glucosidase; Provisional
Probab=29.45 E-value=3.5e+02 Score=33.45 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhCCCCEEEEcc-ccCccCCC----Cc--eeeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 57 MWPDLIQKSKDGGLDVIETYV-FWNLHEPV----RN--QYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv-~Wn~hEp~----~G--~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
..++.++++|+.||.+=.+++ .|...... .. .|.|+-. -|.+++++..++.|++|++..=|||+
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 356789999999987655544 36432211 11 1233322 38999999999999999998877774
No 185
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.39 E-value=60 Score=34.79 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=37.8
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCC----CceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+++.++.++++|..+|.+ |..+... +-.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5566788999999999966 2223211 1122221 1368999999999999999887
No 186
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.18 E-value=93 Score=34.40 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=43.1
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCC--CCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.++..++.++++++.|.+.|-+|.-+..-.+ .++...++ ...+.+++++|++.|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3677899999999999999999875432111 12211222 2378899999999999887753
No 187
>PLN02784 alpha-amylase
Probab=29.11 E-value=1.1e+02 Score=38.93 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCC---CCce-ee----ecCcchHHHHHHHHHHcCcEEEEec
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLHEP---VRNQ-YN----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~hEp---~~G~-~d----F~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.++|..++++|+++|-+.=+.....+ .+.. |+ |....+|.++++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45678889999999987533221111 1111 22 2334699999999999999999864
No 188
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.00 E-value=2.2e+02 Score=30.59 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCC-Cceeee----cCcchHHHHHHHHHHcCcEEEE
Q 003147 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNF----EGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~dF----~g~~dl~~fl~la~~~GL~Vil 113 (844)
+.++.-+...+.+++.|+..+.+-. ..|.+. ++.-|= .....+.+.|++|++.|..+|.
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3555566667778899998776421 122211 111110 0112578899999999999775
No 189
>PRK14567 triosephosphate isomerase; Provisional
Probab=28.86 E-value=1e+02 Score=33.60 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999999 777777766643 44577788899999999999987
No 190
>PRK14566 triosephosphate isomerase; Provisional
Probab=28.82 E-value=1e+02 Score=33.80 Aligned_cols=49 Identities=22% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
-.++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 777777766533 44567788899999999999987
No 191
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.50 E-value=1e+02 Score=34.45 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEcc----ccCccCC---C---Cceee-ecCcchHHHHHHHHHHcCcEEEEec
Q 003147 53 STPEMWPDLIQKSKDGGLDVIETYV----FWNLHEP---V---RNQYN-FEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlN~V~~yv----~Wn~hEp---~---~G~~d-F~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
++.+..++.|+.|...++|+...++ .|.+--+ + .|.+. |=-..|+.++++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 4688899999999999999999987 4754221 1 22111 1123499999999999999999754
No 192
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=28.22 E-value=2.1e+02 Score=32.34 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=39.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEE
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (844)
....|+.--.-.+.+||-+|.+|-+|+.-+.. .|++.||.-.+.+--..
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~s 179 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGS 179 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCc
Confidence 45679999999999999999999999976643 46888888888765553
No 193
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.98 E-value=1.1e+02 Score=36.07 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=45.6
Q ss_pred ecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
.-|.+.|.+.-++.++++.++|+..|+++++-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 44666788888889999999999999998876654 25888999999999988655
No 194
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.61 E-value=1.1e+02 Score=33.37 Aligned_cols=49 Identities=29% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
..++|++|++.|-+ -|..++-.|+=+ +..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 45699999999998 677766666544 33566888999999999999987
No 195
>PLN02389 biotin synthase
Probab=27.60 E-value=74 Score=36.64 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.3
Q ss_pred cHHHHHHHHHhCCCCEEEEccc--cCccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 57 MWPDLIQKSKDGGLDVIETYVF--WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~--Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
.=++.++++|++|++.+..-+- ...+...-..-+|+ +.-+.++.|++.||.|-
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 3478899999999998876322 21221111112444 66788999999999873
No 196
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=27.31 E-value=1.3e+02 Score=38.94 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=54.0
Q ss_pred ecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCc--chHHHHHHHHHHcCcEEEEecCcccccc
Q 003147 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (844)
Q Consensus 48 ~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~VilrpGPYicaE 122 (844)
+|..|+ +.+..++.++++++.||-.=.+++-|.+..- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 344554 3445678899999999987777766665542 335666543 3889999999999999988878888764
No 197
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=27.15 E-value=1.1e+02 Score=34.52 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=45.8
Q ss_pred EECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcC
Q 003147 35 VIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG 108 (844)
Q Consensus 35 ~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G 108 (844)
.+.|+++..++|--++ +.-++.++++|++.+.+..| |..+.|+ ..|++.+.+.|++.|
T Consensus 224 ~l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f-------~DHh~yt-~~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAF-------PDHHRYT-EQDLEKLEAEAKAAG 281 (326)
T ss_pred hccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeEC-------CCCCCCC-HHHHHHHHHhhcccc
Confidence 4789999999999987 34566788899999988666 4444555 458999999999988
No 198
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.14 E-value=1.9e+02 Score=32.99 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 57 ~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.|..-|+++++.|++.|..+...-.-... .+.+ -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~--~~~~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDE--NGKI----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccc--cccc----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987765422221111 1112 24688999999999999764
No 199
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=27.00 E-value=80 Score=35.21 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=42.1
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc----cCccCC------CCc---------eeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRN---------QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~hEp------~~G---------~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
+.+.-++.|..|...++|++..++- |.+.-+ ..| .|.- .|+.++++.|++.|+.||..
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6677889999999999999998875 443321 122 3333 49999999999999999975
Q ss_pred c
Q 003147 115 I 115 (844)
Q Consensus 115 p 115 (844)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 200
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=26.90 E-value=1.9e+02 Score=33.84 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=55.6
Q ss_pred cCCCC--CcccHHHHHHHHHhCCCCEEEE-ccccCcc--CC--CCceeee-----cC-----cchHHHHHHHHH-HcCcE
Q 003147 49 HYPRS--TPEMWPDLIQKSKDGGLDVIET-YVFWNLH--EP--VRNQYNF-----EG-----RYDLVKFVKLVA-EAGLY 110 (844)
Q Consensus 49 Hy~R~--~~~~W~d~l~k~ka~GlN~V~~-yv~Wn~h--Ep--~~G~~dF-----~g-----~~dl~~fl~la~-~~GL~ 110 (844)
+.+++ +-+.|+++|+.++++|+|+|.. .+----. .| ...+..| .. ..++.+++..++ +.||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 5569999999999999999974 1111000 00 0011111 11 138999999985 78999
Q ss_pred EEEecCcccccccCCCC-CCcccccCCCeeeccCChhhHHHH
Q 003147 111 AHLRIGPYVCAEWNFGG-FPLWLHFIPGIQFRTDNEPFKAEM 151 (844)
Q Consensus 111 VilrpGPYicaEw~~GG-~P~WL~~~p~~~~R~~d~~y~~~v 151 (844)
++.-. =|+--. ==.||..+|+.-.-..+.++|+.+
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 76543 122211 135999988754433344555444
No 201
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=26.81 E-value=2.3e+02 Score=30.34 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=53.0
Q ss_pred Cceeeec-CcchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhh
Q 003147 86 RNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (844)
Q Consensus 86 ~G~~dF~-g~~dl~~fl~la~~~GL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~ 164 (844)
.|...+. +..++..+++.|++.|++|++..|= |..+. +. .+ ..++.- -+++.+.+++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~~---r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPAK---RKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHHH---HHHHHHHHHHHHHH
Confidence 5666664 3457889999999999999999861 21111 10 01 123332 34677777777775
Q ss_pred cccccccCCceEeccccccccccccccCcccHHHHHHHHHHHhhcC
Q 003147 165 EKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD 210 (844)
Q Consensus 165 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 210 (844)
+++ =++.|+=|+.... ...-..+++.|++.+++.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 443 2445555664210 1111234555555555444
No 202
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=26.74 E-value=52 Score=41.48 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=50.1
Q ss_pred CcccHHHHHHHHHhCCCCEEEE------------ccccCccCC-----C-CceeeecCcchHHHHHHHHHH-cCcEEEEe
Q 003147 54 TPEMWPDLIQKSKDGGLDVIET------------YVFWNLHEP-----V-RNQYNFEGRYDLVKFVKLVAE-AGLYAHLR 114 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~------------yv~Wn~hEp-----~-~G~~dF~g~~dl~~fl~la~~-~GL~Vilr 114 (844)
|-+.|+.+|+++|+.|.|+|.. |-.-+.||- + -++|.|+ |+..+++-+++ -++..|--
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6799999999999999999973 333333332 2 3668888 99999998865 45554422
Q ss_pred cCcccccccCC-CCCCcccccCCCe
Q 003147 115 IGPYVCAEWNF-GGFPLWLHFIPGI 138 (844)
Q Consensus 115 pGPYicaEw~~-GG~P~WL~~~p~~ 138 (844)
. + |+- +---.||+++|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 1 1 111 1224688887764
No 203
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=26.31 E-value=1.4e+02 Score=36.69 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=51.3
Q ss_pred CcccHHHHHHHHHhCCCCEEEEc-cc-----cC--ccCCCCceeeec---------CcchHHHHHHHHHHcCcEEEEecC
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETY-VF-----WN--LHEPVRNQYNFE---------GRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~y-v~-----Wn--~hEp~~G~~dF~---------g~~dl~~fl~la~~~GL~VilrpG 116 (844)
.+..|+ .++++|+++|-+- ++ |. +---..|-||-+ ...|++++++.|++.||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 556665 6889999999862 32 43 222235666633 346999999999999999996542
Q ss_pred --------cccccccCCCCCCccc
Q 003147 117 --------PYVCAEWNFGGFPLWL 132 (844)
Q Consensus 117 --------PYicaEw~~GG~P~WL 132 (844)
||.-||++.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3666777766666666
No 204
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.86 E-value=57 Score=31.89 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHcCcEEEEecCccccccc
Q 003147 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEW 123 (844)
Q Consensus 96 dl~~fl~la~~~GL~VilrpGPYicaEw 123 (844)
||..||++|++.|+.|++-.-| |++.|
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 9999999999999998866655 44444
No 205
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.83 E-value=1.4e+02 Score=24.10 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEE
Q 003147 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (844)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 33456778889999999998876 3333234455555433 4889999999999765
No 206
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.82 E-value=1.8e+02 Score=36.01 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHhCCCCEEE--EccccCccCC-CCceeeecCcc--hHHHHHHHHHHcCcEEEEecCccccc
Q 003147 55 PEMWPDLIQKSKDGGLDVIE--TYVFWNLHEP-VRNQYNFEGRY--DLVKFVKLVAEAGLYAHLRIGPYVCA 121 (844)
Q Consensus 55 ~~~W~d~l~k~ka~GlN~V~--~yv~Wn~hEp-~~G~~dF~g~~--dl~~fl~la~~~GL~VilrpGPYica 121 (844)
.+...+.++++|+.||-.=. +-.+|- +. .-+.|.|+-.+ |.+++++..++.|++|++..=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 34456778999999987433 334553 32 22456665332 88999999999999999998888853
No 207
>PLN02229 alpha-galactosidase
Probab=24.71 E-value=1.4e+02 Score=35.10 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=49.3
Q ss_pred EecCCCCCcccHHHHHHHH-----HhCCCCEEEEccccCccCC-CCceee-----ecCcchHHHHHHHHHHcCcEE--EE
Q 003147 47 SIHYPRSTPEMWPDLIQKS-----KDGGLDVIETYVFWNLHEP-VRNQYN-----FEGRYDLVKFVKLVAEAGLYA--HL 113 (844)
Q Consensus 47 ~~Hy~R~~~~~W~d~l~k~-----ka~GlN~V~~yv~Wn~hEp-~~G~~d-----F~g~~dl~~fl~la~~~GL~V--il 113 (844)
+..++.+..+.-++..+.| |++|.+.|-+---|...+. .-|.+- |- .-+..+.+..++.||+. -.
T Consensus 71 n~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP--~G~k~ladyiH~~GlKfGIy~ 148 (427)
T PLN02229 71 NFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP--SGIKLLADYVHSKGLKLGIYS 148 (427)
T ss_pred hhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC--CcHHHHHHHHHHCCCceEEec
Confidence 3334455666666666664 9999999999999975432 234431 32 12888899999999984 36
Q ss_pred ecCccccc
Q 003147 114 RIGPYVCA 121 (844)
Q Consensus 114 rpGPYica 121 (844)
-+|...|+
T Consensus 149 d~G~~TC~ 156 (427)
T PLN02229 149 DAGVFTCQ 156 (427)
T ss_pred cCCCcccC
Confidence 67777774
No 208
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.45 E-value=25 Score=36.09 Aligned_cols=65 Identities=26% Similarity=0.389 Sum_probs=44.3
Q ss_pred EEEEEEecCCCC---CcccHHHHHHHHHhCCCCEEEEccccCccCCCCc--eeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 42 VLISGSIHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 42 ~~~sG~~Hy~R~---~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G--~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
.+-+|--.|.|+ .|-.-+ +-+.++|.+.+-+- .--..| -|||-...+|..|.++|+++||.+-|-
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 456666677775 333333 34667888865431 122344 499988889999999999999998764
No 209
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=23.93 E-value=7.4e+02 Score=26.14 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
++.++.|+++|++++.+- |=| .|||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 456889999999999881 122 24543 3457777888888888754
No 210
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=23.86 E-value=53 Score=36.74 Aligned_cols=90 Identities=20% Similarity=0.403 Sum_probs=49.9
Q ss_pred EEEEEEec------CCCCCcccHHHHHHHHHhC-CCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEe
Q 003147 42 VLISGSIH------YPRSTPEMWPDLIQKSKDG-GLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 42 ~~~sG~~H------y~R~~~~~W~d~l~k~ka~-GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 114 (844)
++.||. | +.+++.+-|++-+++--.+ |+|-++-| |.+-++.. ....++|++|++.|-+.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 456777 8 3445556566667766665 88888875 55555543 37889999999999988321
Q ss_pred cCcccccccCCC-CCCcccccCCCeeeccCChhhHHHHHHHHH
Q 003147 115 IGPYVCAEWNFG-GFPLWLHFIPGIQFRTDNEPFKAEMQRFTA 156 (844)
Q Consensus 115 pGPYicaEw~~G-G~P~WL~~~p~~~~R~~d~~y~~~v~~~~~ 156 (844)
+-.++ .+-.|+-. ..++.|++++++|-+
T Consensus 173 -------~~~N~~am~k~~~~-------~~~~~~~~A~~~y~e 201 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE-------QRNPEFKDACEKYSE 201 (324)
T ss_dssp ----------GGGHHHHHCCC-------CCSHHHHHHHHHHGG
T ss_pred -------cCCChHHHHHhhhh-------ccCHHHHHHHHHhhh
Confidence 11111 11223321 157888888877654
No 211
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.75 E-value=1.6e+02 Score=32.20 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEE
Q 003147 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (844)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 113 (844)
.|.+.=++.+++..+.|+..|+++++.|.. ..+...++.|++.|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~~------------~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALNDV------------RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCChH------------HHHHHHHHHHHHCCCeEEE
Confidence 455566889999999999999998876652 3789999999999998775
No 212
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.59 E-value=96 Score=33.28 Aligned_cols=59 Identities=19% Similarity=0.071 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCCC-ceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+++++.++.++++|.+.|.+.-.-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4567888899999999998631100001111 11111 01368888999999999999887
No 213
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.31 E-value=62 Score=36.64 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCEEE-----EccccCccCCCCceeeecCcchHHHHHHHHHHcCcEE
Q 003147 58 WPDLIQKSKDGGLDVIE-----TYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (844)
Q Consensus 58 W~d~l~k~ka~GlN~V~-----~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (844)
-++.|+++|++|++.+- ++..--.+.-.+++...+ +..+.++.|++.|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 46679999999987554 222222233335544333 5567899999999976
No 214
>PRK07094 biotin synthase; Provisional
Probab=23.05 E-value=71 Score=35.45 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCCEEEEccc---cCccCCCCceeeecCcchHHHHHHHHHHcCcEE
Q 003147 59 PDLIQKSKDGGLDVIETYVF---WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~---Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (844)
++.+++||++|++.|.+.+- -..++......+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 57788899999998876432 22222221234444 7778899999999864
No 215
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.01 E-value=58 Score=36.35 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=66.5
Q ss_pred EeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE-EecCcc
Q 003147 40 RRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPY 118 (844)
Q Consensus 40 ~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lrpGPY 118 (844)
..++++-+..--+.| +.|++.+..+-++|+|.|.- +|+.- .|..+|.++|+++|..++ +|..|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L---------~ddpel~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFL---------SDDPELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-H---------CCHHHHHCCHHCCT--EEETTS--S
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhh---------ccCHHHHHHHHHcCCeEeeccCCCc
Confidence 345566555554554 88999999999999999997 77742 277899999999999876 664221
Q ss_pred cccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccccccccccCcccHHH
Q 003147 119 VCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSY 198 (844)
Q Consensus 119 icaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y 198 (844)
- + + .++ .--..-.+++|++= |.. .+.+|.+
T Consensus 99 ~------------~--------~------------~~~---------g~~~~~~~~rv~~v-----GTD----cavGK~t 128 (301)
T PF07755_consen 99 D------------L--------P------------VAS---------GRIREVKAKRVLTV-----GTD----CAVGKMT 128 (301)
T ss_dssp S----------------------------------------------SGGGG-SSEEEEEE-----ESS----SSSSHHH
T ss_pred c------------c--------c------------ccc---------CccccCCCCEEEEE-----ccC----ccccHHH
Confidence 0 0 0 000 00011245777762 432 2367777
Q ss_pred HHH-HHHHHhhcCCCcceEeccC
Q 003147 199 IKW-AAGMALSLDTGVPWVMCQQ 220 (844)
Q Consensus 199 ~~~-l~~~~~~~g~~vp~~~~~~ 220 (844)
... |++.+++.|++.-++-.+|
T Consensus 129 Tal~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 129 TALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHHcCCCceEEecCC
Confidence 644 8899999999887665444
No 216
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=22.80 E-value=4.6e+02 Score=24.77 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=40.5
Q ss_pred eEEEEEEeecCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEEeccCC-----CceeEEeeeeccCC-CccEEEEEE
Q 003147 478 YLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSS-----NAKVTVDFPIALAP-GKNTFDLLS 551 (844)
Q Consensus 478 Yl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~~G~~~~~~~-----~~~~~~~~~i~l~~-g~~~L~iLv 551 (844)
.+.++..|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.+.+ +.+.|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 345777777655442 234443 6788999999999976654321 00111223344544 468888877
Q ss_pred eecCc
Q 003147 552 LTVGL 556 (844)
Q Consensus 552 en~Gr 556 (844)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 66553
No 217
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.77 E-value=3.9e+02 Score=31.31 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCEEEEccc----cCccCCCCceeeecCcchHHHHHHHHHHcCcEE--EEecCcccccccCCCCCCcccc
Q 003147 60 DLIQKSKDGGLDVIETYVF----WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWLH 133 (844)
Q Consensus 60 d~l~k~ka~GlN~V~~yv~----Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilrpGPYicaEw~~GG~P~WL~ 133 (844)
..++.+.+.|.|+++++.- |..-... ..++++|.++++++||.+ ++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4678899999999999863 5433332 237999999999998852 44456663
Q ss_pred cCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 134 ~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
+.+-+.|+..++...+.|.+-+.+-+
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666666666555554
No 218
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.72 E-value=97 Score=33.08 Aligned_cols=59 Identities=10% Similarity=-0.059 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHhCCCCEEEEccccCccCCCCce-eeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 56 ~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+..++.++.++++|..+|.+...+.--...+.+ ++ .-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446778889999999999874333211111111 11 112367888889999999999987
No 219
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.62 E-value=2e+02 Score=32.07 Aligned_cols=67 Identities=15% Similarity=0.357 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccc-cCc-cCCCCce-----eeecCc--chHHHHHHHHHHcCcEEEEecCcccc
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVF-WNL-HEPVRNQ-----YNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~-Wn~-hEp~~G~-----~dF~g~--~dl~~fl~la~~~GL~VilrpGPYic 120 (844)
+.+.-++.++++++.||-.=.+++- |.. ++..-|. |+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 6677899999999999987666653 643 2322232 344332 38999999999999999988767664
No 220
>PRK06703 flavodoxin; Provisional
Probab=22.44 E-value=3.3e+02 Score=26.44 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=59.3
Q ss_pred ECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 36 ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+..-..++++...+-.-.+|+.+++-+..+++.-++.....+|-...-. |.. .....+.+-+..++.|..++.+|
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665555534445666777788887666665555555221000 110 12345567777788999887764
Q ss_pred CcccccccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 116 GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 116 GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
+- ++...++..-++++++|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 11111234677888899998887665
No 221
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=22.43 E-value=1.3e+02 Score=34.14 Aligned_cols=58 Identities=31% Similarity=0.520 Sum_probs=46.0
Q ss_pred ECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCc
Q 003147 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGL 109 (844)
Q Consensus 36 ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL 109 (844)
+.|+++..++|=-|++| -++.++++|++.|.++.| |+.++|+ ..+|+.+.+.++..||
T Consensus 231 ~~~~~v~afaGIg~P~r--------Ff~tL~~~g~~~~~~~~F-------pDH~~f~-~~~l~~l~~~~~~~~L 288 (336)
T COG1663 231 LKGKRVVAFAGIGNPQR--------FFATLRNLGIQVVETLAF-------PDHYDFS-AADLEDLAKKAQADGL 288 (336)
T ss_pred cCCceEEEEEecCChHH--------HHHHHHHcCcceeeeecC-------Cchhhcc-HHHHHHHHhhhccceE
Confidence 34688999999999854 567789999999999877 7777787 3578888888877444
No 222
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=22.32 E-value=59 Score=35.15 Aligned_cols=49 Identities=27% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEecC
Q 003147 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 62 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
..++|++|++.|-+ -|..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 56799999999998 6666665555 3356789999999999999999987
No 223
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.02 E-value=1.3e+02 Score=28.54 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 53 ~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
.+++...+.++.+++.|+..|=+. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 378899999999999998877652 22 255889999999999976
No 224
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=21.50 E-value=1.1e+02 Score=35.27 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=53.6
Q ss_pred EEECCEEeEEEEEEecCCCC-CcccHHHHHHHHHhCC--CCEEEEccccCccCCCCceeeecCc-chHHHHHHHHHHcCc
Q 003147 34 VVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGG--LDVIETYVFWNLHEPVRNQYNFEGR-YDLVKFVKLVAEAGL 109 (844)
Q Consensus 34 f~ldG~~~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~G--lN~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL 109 (844)
=++||-+ +-.++.+.|+. +.+.-+..|++-+..| -..|-| +|+|..+|+ .+|.++.++|+++|.
T Consensus 135 SiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a 202 (388)
T COG0156 135 SIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGA 202 (388)
T ss_pred hHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCc
Confidence 3677777 56677777775 5567777777766554 456666 999999998 899999999999998
Q ss_pred EEEEe
Q 003147 110 YAHLR 114 (844)
Q Consensus 110 ~Vilr 114 (844)
++++-
T Consensus 203 ~L~VD 207 (388)
T COG0156 203 LLYVD 207 (388)
T ss_pred EEEEE
Confidence 88774
No 225
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.26 E-value=74 Score=35.84 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEEEccccCcc------CCCCceeeecCcchHHHHHHHHHHcCcEE
Q 003147 59 PDLIQKSKDGGLDVIETYVFWNLH------EPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~yv~Wn~h------Ep~~G~~dF~g~~dl~~fl~la~~~GL~V 111 (844)
++.|++||++|++.+-. .-.... .-.|+...++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998740 001111 1123333333 5578999999999976
No 226
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=21.23 E-value=92 Score=38.55 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCEEEE--------cc-ccCccCC----CCceeeec----CcchHHHHHHHHHHcCcEEEEec
Q 003147 59 PDLIQKSKDGGLDVIET--------YV-FWNLHEP----VRNQYNFE----GRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 59 ~d~l~k~ka~GlN~V~~--------yv-~Wn~hEp----~~G~~dF~----g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+++|..+|.+|+|+|+. |+ .|.++-. .-+.|--. -..++.++++.|+.+||.|||-.
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 44588999999999995 22 3544421 00111100 02489999999999999999875
No 227
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=21.20 E-value=1.3e+02 Score=32.45 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.4
Q ss_pred EECCEEeEEEEEEecCCCC-CcccHHHHHHHHHhCCCCEEEE
Q 003147 35 VIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIET 75 (844)
Q Consensus 35 ~ldG~~~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlN~V~~ 75 (844)
.+.|+++.++.|.+|+..- ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 5789999999999997554 3444477899999999987654
No 228
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.14 E-value=1.4e+02 Score=36.63 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=44.3
Q ss_pred ecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEE
Q 003147 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (844)
Q Consensus 48 ~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 112 (844)
+=|.|.|.+.-+..++++++.|+..|+++.+.|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 44667777778888999999999999998776653 378999999999999864
No 229
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.86 E-value=1.1e+02 Score=34.67 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=45.0
Q ss_pred EecCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 47 SIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 47 ~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
+-++ |.+...=.-..+.++++|-++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-+++-+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 5543332223677999999999999999955331 0011123479999999999999998864
No 230
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.79 E-value=1.8e+02 Score=34.36 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=51.7
Q ss_pred ccceEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHhCCCCEEEEccc----cCccC---C------------------
Q 003147 30 DHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF----WNLHE---P------------------ 84 (844)
Q Consensus 30 d~~~f~ldG~~~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~----Wn~hE---p------------------ 84 (844)
.-++|+||=-| |++ +.+.-++.|+.|....+|....++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566666443 554 7888899999999999999998873 54311 0
Q ss_pred --------------CCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 85 --------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 85 --------------~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
..|.|. ..|+..+++.|++.|+.||..+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3599999999999999999654
No 231
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.75 E-value=5.1e+02 Score=30.10 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred EeEEEEEEecCCCCCcccH----HHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcCcEEEEec
Q 003147 40 RRVLISGSIHYPRSTPEMW----PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (844)
Q Consensus 40 ~~~~~sG~~Hy~R~~~~~W----~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilrp 115 (844)
.+++++|.+.-...|+.+. .+.++++++.|+. +|+.+ |.-|+.. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~-------GNHD~~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLA-------GNHDSVA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEc-------CCCCChh--hhhhHHHHHHHCCcEEEecc
Confidence 3567888886444444433 3445677777765 34433 4444332 25556777889999988544
No 232
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=20.66 E-value=92 Score=31.55 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=18.7
Q ss_pred EEeeCCCceEEEEECCeeccccc
Q 003147 638 AIDFTGMGKGEAWVNGQSIGRYW 660 (844)
Q Consensus 638 ~Ld~~g~gKG~vwVNG~nlGRYW 660 (844)
.|..++.|+=.+||||+.+|+-=
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 56777888889999999999743
No 233
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.64 E-value=2.2e+02 Score=31.48 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecC---cchHHHHHHHHHHcCcEEEEe
Q 003147 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG---RYDLVKFVKLVAEAGLYAHLR 114 (844)
Q Consensus 54 ~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g---~~dl~~fl~la~~~GL~Vilr 114 (844)
.-+.-++-+.-+.++|+..|-+-.-|...+ ....+||+. ..||.++++-|++.|..|+|.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 456677889999999999999988898722 345677763 469999999999999999886
No 234
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=20.55 E-value=2.4e+02 Score=30.59 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=64.1
Q ss_pred EEEEEEecCCCCCc----ccHHHHHHHHHhCCCCEEEEccccCccCCCCceeeecCcchHHHHHHHHHHcC--cEEEEec
Q 003147 42 VLISGSIHYPRSTP----EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG--LYAHLRI 115 (844)
Q Consensus 42 ~~~sG~~Hy~R~~~----~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G--L~Vilrp 115 (844)
+-+++..|+...|. +.=.++|++=-++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.||+..
T Consensus 129 ~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI 195 (274)
T cd00537 129 FSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGI 195 (274)
T ss_pred CccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 34555555533332 22234555555679999999544 3333 7899999999998 5566666
Q ss_pred Ccccc-------cccCCCCCCcccccCCCeeeccCChhhHHHHHHHHHHHHHHHh
Q 003147 116 GPYVC-------AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (844)
Q Consensus 116 GPYic-------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~v~~~~~~l~~~~~ 163 (844)
-|-.. ++|-.-++|.|+.+.=. ....+....+++-.++..++++.+.
T Consensus 196 ~p~~s~~~l~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 196 MPLTSYKQAKRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred cccCCHHHHHHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66432 35555678998875210 0111223445566677777777766
No 235
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=20.38 E-value=1.1e+02 Score=31.94 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=43.3
Q ss_pred cCCCCCcccHHHHHHHHHhCCCCEEEEccccCccCCCCceee-ecCcchHHH-HHHHHHHcCcEEEEecCcccccccCCC
Q 003147 49 HYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYN-FEGRYDLVK-FVKLVAEAGLYAHLRIGPYVCAEWNFG 126 (844)
Q Consensus 49 Hy~R~~~~~W~d~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~d-F~g~~dl~~-fl~la~~~GL~VilrpGPYicaEw~~G 126 (844)
-..|++.+|--..-+.+|+.|+.++-.--.=..|-...=-|- -.|. +++ .++| +..-++|+||||..| |...-
T Consensus 102 gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGE--vE~~v~eL--~F~~~~i~RPG~ll~-~R~es 176 (238)
T KOG4039|consen 102 GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGE--VERDVIEL--DFKHIIILRPGPLLG-ERTES 176 (238)
T ss_pred ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccch--hhhhhhhc--cccEEEEecCcceec-ccccc
Confidence 345889999998999999999988754322222322211111 1121 111 1111 223468999999765 33332
Q ss_pred CCCccccc
Q 003147 127 GFPLWLHF 134 (844)
Q Consensus 127 G~P~WL~~ 134 (844)
-.-.||-+
T Consensus 177 r~geflg~ 184 (238)
T KOG4039|consen 177 RQGEFLGN 184 (238)
T ss_pred cccchhhh
Confidence 23345543
No 236
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.14 E-value=1e+02 Score=33.34 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCCcccHHHHHHHHHhCCCCEEEEcccc-CccC---CCCceeee-cCcchHHHHHHHHHHcCcEEEEecC
Q 003147 52 RSTPEMWPDLIQKSKDGGLDVIETYVFW-NLHE---PVRNQYNF-EGRYDLVKFVKLVAEAGLYAHLRIG 116 (844)
Q Consensus 52 R~~~~~W~d~l~k~ka~GlN~V~~yv~W-n~hE---p~~G~~dF-~g~~dl~~fl~la~~~GL~VilrpG 116 (844)
+.+++.|++..+..|+.|+..+.+.+-- .+.. ...-.|-- |++..--.||+.+++.|+-|||-+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 3689999999999999999999995431 1111 11112221 3444455689999999999999876
No 237
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=20.03 E-value=3.5e+02 Score=27.82 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHcCcEEEEecCcccccccCC-----C--CCCcccccCCC
Q 003147 95 YDLVKFVKLVAEAGLYAHLRIGPYVCAEWNF-----G--GFPLWLHFIPG 137 (844)
Q Consensus 95 ~dl~~fl~la~~~GL~VilrpGPYicaEw~~-----G--G~P~WL~~~p~ 137 (844)
..+..|++..++.|.+++|=.+++.....-. . ..|.|+.+.+.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3567889999888988887777654332211 1 13478876543
Done!