BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003148
         (844 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
          Length = 493

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 504 HCDMQLATALVDMFA-RCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFN 562
           H D  L      +F  R GD + A  +F+R+EK     W + I    M G    ++ELF 
Sbjct: 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTS-RMWDSMIEYEFMVG----SMELFR 404

Query: 563 EMLRQ---GIKPDSIV 575
           E++ Q    IK D+I+
Sbjct: 405 ELVDQKMDAIKADAIL 420


>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
          Length = 493

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 504 HCDMQLATALVDMFA-RCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFN 562
           H D  L      +F  R GD + A  +F+R+EK     W + I    M G    ++ELF 
Sbjct: 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTS-RMWDSMIEYEFMVG----SMELFR 404

Query: 563 EMLRQ---GIKPDSIV 575
           E++ Q    IK D+I+
Sbjct: 405 ELVDQKMDAIKADAIL 420


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,447,111
Number of Sequences: 62578
Number of extensions: 929322
Number of successful extensions: 2297
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 2
length of query: 844
length of database: 14,973,337
effective HSP length: 107
effective length of query: 737
effective length of database: 8,277,491
effective search space: 6100510867
effective search space used: 6100510867
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)