Query 003148
Match_columns 844
No_of_seqs 905 out of 5240
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 17:56:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7E-148 2E-152 1324.0 85.1 772 29-842 83-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 9E-125 2E-129 1098.4 67.4 613 201-844 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.7E-85 1E-89 782.3 65.4 686 99-839 47-746 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4.3E-71 9.4E-76 646.2 53.8 475 99-607 83-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 6.8E-70 1.5E-74 636.5 51.5 534 60-642 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1E-65 2.2E-70 601.4 56.6 552 170-763 367-964 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-34 7.2E-39 351.5 67.6 645 43-705 173-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-34 6.3E-39 352.0 66.4 606 83-703 277-899 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 3.7E-34 8.1E-39 245.4 7.8 106 711-834 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 1.3E-24 2.8E-29 267.0 61.1 610 72-703 36-739 (1157)
11 PRK11447 cellulose synthase su 99.9 1.9E-22 4.1E-27 248.1 60.1 613 43-676 42-749 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.3E-21 2.9E-26 229.1 56.3 592 76-705 56-741 (987)
13 PRK09782 bacteriophage N4 rece 99.9 6.9E-21 1.5E-25 223.2 56.1 574 105-705 44-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 9.8E-21 2.1E-25 195.7 34.1 449 207-699 51-514 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 1.1E-18 2.5E-23 180.5 29.0 415 248-705 57-486 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 5.3E-17 1.2E-21 187.8 42.2 417 242-704 130-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 1E-17 2.2E-22 183.9 26.6 298 215-574 46-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 6.3E-18 1.4E-22 185.5 24.4 291 383-711 43-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 2.2E-15 4.8E-20 165.1 40.3 584 83-684 110-759 (1018)
20 KOG2002 TPR-containing nuclear 99.8 4E-15 8.7E-20 163.1 40.9 592 83-706 146-800 (1018)
21 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.6E-20 178.5 41.1 185 518-704 248-456 (765)
22 PRK15174 Vi polysaccharide exp 99.8 5.4E-16 1.2E-20 178.7 33.8 353 286-675 17-386 (656)
23 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-15 5.8E-20 173.6 38.9 250 438-703 332-596 (615)
24 PRK15174 Vi polysaccharide exp 99.7 1.4E-15 3E-20 175.3 30.2 312 385-705 52-382 (656)
25 PRK14574 hmsH outer membrane p 99.7 4.8E-13 1E-17 154.4 46.9 431 184-704 45-513 (822)
26 PRK10049 pgaA outer membrane p 99.7 1.4E-13 2.9E-18 162.4 41.9 98 577-677 363-463 (765)
27 KOG4422 Uncharacterized conser 99.7 1.2E-13 2.5E-18 138.0 31.5 339 102-506 115-467 (625)
28 KOG0495 HAT repeat protein [RN 99.7 5.2E-11 1.1E-15 125.4 51.3 606 79-717 263-891 (913)
29 KOG2076 RNA polymerase III tra 99.7 2.8E-11 6E-16 132.7 48.7 614 73-700 149-891 (895)
30 PRK14574 hmsH outer membrane p 99.6 4.6E-12 1E-16 146.4 42.4 215 442-677 297-520 (822)
31 KOG4422 Uncharacterized conser 99.6 9.6E-13 2.1E-17 131.5 29.4 248 98-377 202-470 (625)
32 KOG2076 RNA polymerase III tra 99.6 6.8E-11 1.5E-15 129.7 45.2 534 152-687 153-786 (895)
33 KOG2003 TPR repeat-containing 99.6 4E-13 8.6E-18 134.8 25.3 451 212-691 209-710 (840)
34 KOG4318 Bicoid mRNA stability 99.6 1.9E-11 4E-16 133.0 38.8 229 473-705 492-809 (1088)
35 KOG0495 HAT repeat protein [RN 99.5 1E-09 2.2E-14 115.9 44.2 485 146-682 384-892 (913)
36 PF13429 TPR_15: Tetratricopep 99.5 2.2E-14 4.9E-19 148.9 9.8 256 443-703 14-276 (280)
37 KOG4318 Bicoid mRNA stability 99.5 4.6E-11 9.9E-16 130.1 33.4 128 577-708 463-598 (1088)
38 KOG1126 DNA-binding cell divis 99.5 3.5E-12 7.6E-17 135.5 19.8 160 537-703 420-585 (638)
39 KOG2003 TPR repeat-containing 99.5 2.2E-11 4.8E-16 122.4 24.3 130 66-200 203-336 (840)
40 KOG1915 Cell cycle control pro 99.5 2.3E-09 4.9E-14 109.2 38.4 500 172-703 72-624 (677)
41 KOG1155 Anaphase-promoting com 99.4 4.5E-10 9.8E-15 114.2 32.8 360 269-702 159-534 (559)
42 KOG0547 Translocase of outer m 99.4 8E-11 1.7E-15 120.2 27.5 213 485-703 339-565 (606)
43 KOG1155 Anaphase-promoting com 99.4 8.2E-11 1.8E-15 119.4 26.9 327 369-703 158-494 (559)
44 KOG1126 DNA-binding cell divis 99.4 4.1E-12 8.9E-17 135.0 18.5 252 443-704 359-620 (638)
45 KOG2047 mRNA splicing factor [ 99.4 2E-08 4.4E-13 106.2 40.0 410 65-500 103-578 (835)
46 KOG1173 Anaphase-promoting com 99.3 2.2E-09 4.8E-14 112.1 30.6 195 504-703 309-517 (611)
47 PRK10747 putative protoheme IX 99.3 2.7E-10 6E-15 123.9 25.4 145 520-671 242-391 (398)
48 PRK10747 putative protoheme IX 99.3 1.4E-09 3E-14 118.3 28.8 246 448-703 129-389 (398)
49 TIGR02521 type_IV_pilW type IV 99.3 3.3E-10 7.1E-15 114.4 22.3 197 505-703 29-231 (234)
50 PF13429 TPR_15: Tetratricopep 99.3 1.2E-11 2.7E-16 128.4 11.9 255 380-669 13-276 (280)
51 TIGR00540 hemY_coli hemY prote 99.3 4.6E-10 1E-14 122.9 24.3 250 449-700 96-360 (409)
52 TIGR00540 hemY_coli hemY prote 99.3 1.5E-09 3.2E-14 118.8 28.2 279 387-669 96-398 (409)
53 KOG1915 Cell cycle control pro 99.3 8.8E-09 1.9E-13 105.0 29.5 384 287-706 86-502 (677)
54 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-11 2.7E-16 89.7 5.3 50 202-251 1-50 (50)
55 KOG4162 Predicted calmodulin-b 99.2 3.5E-07 7.6E-12 99.5 37.3 443 168-714 318-792 (799)
56 KOG0985 Vesicle coat protein c 99.2 3.5E-06 7.7E-11 93.7 45.3 492 176-702 609-1247(1666)
57 KOG2047 mRNA splicing factor [ 99.2 2.7E-06 5.8E-11 90.6 42.5 545 104-692 103-711 (835)
58 PF13041 PPR_2: PPR repeat fam 99.2 9.8E-11 2.1E-15 85.0 6.7 50 536-585 1-50 (50)
59 PRK11189 lipoprotein NlpI; Pro 99.1 6.8E-09 1.5E-13 108.0 21.8 211 486-705 40-266 (296)
60 KOG0547 Translocase of outer m 99.1 1.3E-07 2.9E-12 97.2 29.3 217 448-672 337-568 (606)
61 COG3071 HemY Uncharacterized e 99.1 6.9E-08 1.5E-12 97.4 26.4 281 318-668 97-388 (400)
62 PRK12370 invasion protein regu 99.1 1.4E-08 3.1E-13 115.5 24.6 244 452-705 276-536 (553)
63 KOG1840 Kinesin light chain [C 99.1 1.4E-08 3.1E-13 109.9 22.3 230 473-702 200-477 (508)
64 KOG0985 Vesicle coat protein c 99.1 6.5E-06 1.4E-10 91.7 42.4 577 67-688 609-1326(1666)
65 PRK12370 invasion protein regu 99.1 1.1E-08 2.5E-13 116.3 22.6 211 486-704 275-502 (553)
66 KOG1174 Anaphase-promoting com 99.1 9.8E-07 2.1E-11 89.0 32.9 266 371-677 228-507 (564)
67 COG3063 PilF Tfp pilus assembl 99.1 1E-08 2.2E-13 95.6 17.7 160 541-705 38-203 (250)
68 COG2956 Predicted N-acetylgluc 99.1 2.3E-08 5.1E-13 97.5 20.6 296 388-724 48-367 (389)
69 KOG2376 Signal recognition par 99.1 1.5E-06 3.2E-11 91.9 35.2 437 211-698 19-514 (652)
70 KOG3616 Selective LIM binding 99.0 8.6E-06 1.9E-10 87.6 40.5 378 278-704 619-1024(1636)
71 KOG3616 Selective LIM binding 99.0 3.3E-06 7.1E-11 90.7 37.2 547 65-700 534-1130(1636)
72 COG3071 HemY Uncharacterized e 99.0 1.5E-07 3.3E-12 95.0 25.3 251 450-705 97-358 (400)
73 COG2956 Predicted N-acetylgluc 99.0 2E-07 4.4E-12 91.1 24.4 244 450-699 48-306 (389)
74 KOG1127 TPR repeat-containing 99.0 4E-06 8.8E-11 93.6 37.0 582 48-688 475-1122(1238)
75 TIGR02521 type_IV_pilW type IV 99.0 7.4E-08 1.6E-12 97.0 22.4 190 479-672 38-234 (234)
76 KOG3785 Uncharacterized conser 99.0 5E-07 1.1E-11 89.1 25.9 158 180-351 64-228 (557)
77 KOG1173 Anaphase-promoting com 99.0 4.9E-07 1.1E-11 95.0 26.7 205 406-649 312-530 (611)
78 KOG1174 Anaphase-promoting com 99.0 2.2E-06 4.8E-11 86.5 30.1 277 436-749 231-519 (564)
79 KOG1840 Kinesin light chain [C 98.9 1.6E-07 3.5E-12 101.7 23.2 95 575-669 369-478 (508)
80 KOG1156 N-terminal acetyltrans 98.9 1E-05 2.3E-10 86.6 35.3 462 142-668 12-509 (700)
81 KOG1129 TPR repeat-containing 98.9 3.7E-08 8E-13 95.9 15.1 223 441-704 227-458 (478)
82 PRK11189 lipoprotein NlpI; Pro 98.9 5.2E-07 1.1E-11 93.9 25.2 221 446-674 35-269 (296)
83 KOG1125 TPR repeat-containing 98.9 6.1E-08 1.3E-12 102.2 15.7 219 483-704 296-527 (579)
84 KOG3785 Uncharacterized conser 98.8 6.4E-05 1.4E-09 74.6 33.9 120 487-613 374-498 (557)
85 KOG1127 TPR repeat-containing 98.8 2.2E-05 4.9E-10 87.9 32.3 519 168-703 486-1103(1238)
86 KOG2376 Signal recognition par 98.7 8.1E-05 1.8E-09 79.2 34.0 119 110-235 19-141 (652)
87 KOG1129 TPR repeat-containing 98.7 1E-07 2.2E-12 93.0 11.3 230 410-677 227-465 (478)
88 KOG3617 WD40 and TPR repeat-co 98.7 0.00023 5E-09 78.2 37.0 80 308-402 915-994 (1416)
89 KOG3617 WD40 and TPR repeat-co 98.7 1.4E-05 3E-10 87.3 27.2 421 171-659 724-1189(1416)
90 KOG4340 Uncharacterized conser 98.7 6.3E-05 1.4E-09 73.0 28.0 380 278-704 14-443 (459)
91 PF04733 Coatomer_E: Coatomer 98.7 6.3E-07 1.4E-11 91.8 15.8 149 547-704 111-265 (290)
92 COG3063 PilF Tfp pilus assembl 98.7 6.1E-06 1.3E-10 77.5 20.5 188 513-702 41-234 (250)
93 PRK15359 type III secretion sy 98.6 5E-07 1.1E-11 82.7 13.3 122 558-686 13-137 (144)
94 KOG0624 dsRNA-activated protei 98.6 3.3E-05 7.1E-10 76.4 25.6 189 380-573 43-256 (504)
95 KOG4162 Predicted calmodulin-b 98.6 9.6E-05 2.1E-09 81.1 31.3 132 540-676 652-789 (799)
96 TIGR03302 OM_YfiO outer membra 98.6 2.4E-06 5.2E-11 86.2 18.6 178 507-704 33-232 (235)
97 KOG1156 N-terminal acetyltrans 98.6 7.3E-05 1.6E-09 80.4 29.5 93 613-705 375-469 (700)
98 KOG0548 Molecular co-chaperone 98.6 9.9E-05 2.1E-09 77.9 29.1 213 478-704 230-455 (539)
99 PF12569 NARP1: NMDA receptor- 98.6 1.4E-05 3.1E-10 88.0 23.8 242 382-633 11-286 (517)
100 PF12569 NARP1: NMDA receptor- 98.5 2.9E-05 6.2E-10 85.7 25.6 248 348-601 12-290 (517)
101 PLN02789 farnesyltranstransfer 98.5 1.9E-05 4.1E-10 82.1 22.7 216 449-688 32-268 (320)
102 KOG0548 Molecular co-chaperone 98.5 0.00017 3.8E-09 76.1 29.4 163 513-687 304-472 (539)
103 PRK15359 type III secretion sy 98.5 2.9E-06 6.3E-11 77.6 14.3 107 594-705 14-122 (144)
104 PRK04841 transcriptional regul 98.5 0.0024 5.3E-08 78.5 44.2 161 544-704 579-760 (903)
105 PRK10370 formate-dependent nit 98.5 5.8E-06 1.3E-10 80.0 16.7 146 545-705 23-174 (198)
106 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.5E-12 61.1 4.0 33 168-200 2-34 (34)
107 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 4E-12 60.8 4.2 33 269-301 2-34 (34)
108 cd05804 StaR_like StaR_like; a 98.5 6.9E-05 1.5E-09 81.1 26.0 255 447-705 53-337 (355)
109 KOG1914 mRNA cleavage and poly 98.4 0.0012 2.5E-08 69.9 32.8 181 453-635 347-536 (656)
110 PF04733 Coatomer_E: Coatomer 98.4 6.4E-06 1.4E-10 84.5 16.1 154 515-675 110-270 (290)
111 PRK04841 transcriptional regul 98.4 0.0019 4E-08 79.5 40.5 87 515-601 661-759 (903)
112 KOG1070 rRNA processing protei 98.4 1.5E-05 3.2E-10 92.2 19.6 199 504-706 1455-1665(1710)
113 PRK15363 pathogenicity island 98.4 1.4E-05 2.9E-10 71.8 15.4 118 609-749 35-154 (157)
114 PRK10370 formate-dependent nit 98.4 1.9E-05 4E-10 76.5 17.3 155 514-681 23-184 (198)
115 KOG1125 TPR repeat-containing 98.3 9.9E-06 2.2E-10 85.9 14.1 214 384-601 294-526 (579)
116 COG4783 Putative Zn-dependent 98.3 0.00014 2.9E-09 76.2 22.0 145 539-705 307-455 (484)
117 PRK15179 Vi polysaccharide bio 98.3 3E-05 6.5E-10 88.8 18.9 139 536-679 84-226 (694)
118 TIGR03302 OM_YfiO outer membra 98.3 2.7E-05 5.9E-10 78.6 16.6 180 472-672 33-234 (235)
119 KOG1128 Uncharacterized conser 98.3 1E-05 2.2E-10 88.0 13.8 158 506-671 456-617 (777)
120 cd05804 StaR_like StaR_like; a 98.2 0.0019 4E-08 69.9 31.1 195 105-301 8-213 (355)
121 COG5010 TadD Flp pilus assembl 98.2 4.6E-05 1E-09 73.3 15.5 135 569-705 62-198 (257)
122 PLN02789 farnesyltranstransfer 98.2 9.9E-05 2.2E-09 76.8 19.3 183 515-702 45-248 (320)
123 TIGR02552 LcrH_SycD type III s 98.2 9E-06 2E-10 73.9 10.3 100 605-704 12-114 (135)
124 COG5010 TadD Flp pilus assembl 98.2 0.00011 2.4E-09 70.8 17.2 149 513-666 72-227 (257)
125 PRK15179 Vi polysaccharide bio 98.2 0.00017 3.7E-09 82.8 21.5 143 502-649 81-230 (694)
126 KOG1070 rRNA processing protei 98.1 0.00012 2.7E-09 85.0 18.7 215 374-589 1457-1687(1710)
127 KOG1128 Uncharacterized conser 98.1 7.6E-05 1.6E-09 81.4 15.7 194 503-703 394-615 (777)
128 TIGR00756 PPR pentatricopeptid 98.1 5.3E-06 1.1E-10 54.8 4.4 35 205-239 1-35 (35)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.3E-09 78.0 16.3 122 576-702 172-295 (395)
130 KOG0624 dsRNA-activated protei 98.1 0.0012 2.5E-08 65.7 21.9 188 512-704 43-252 (504)
131 COG4783 Putative Zn-dependent 98.1 0.00034 7.3E-09 73.3 18.7 124 577-703 310-436 (484)
132 KOG2053 Mitochondrial inherita 98.0 0.034 7.3E-07 62.9 34.8 194 105-302 43-254 (932)
133 TIGR00756 PPR pentatricopeptid 98.0 9E-06 2E-10 53.7 4.4 35 539-573 1-35 (35)
134 TIGR02552 LcrH_SycD type III s 98.0 0.00011 2.4E-09 66.6 12.9 113 560-677 5-121 (135)
135 KOG0553 TPR repeat-containing 97.9 0.00014 3.1E-09 71.4 12.0 99 583-684 91-192 (304)
136 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 4E-10 51.8 4.1 34 204-237 1-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00025 5.5E-09 75.2 14.7 127 508-639 170-298 (395)
138 PRK14720 transcript cleavage f 97.8 0.0014 3.1E-08 76.1 20.6 218 436-693 30-273 (906)
139 PLN03088 SGT1, suppressor of 97.8 0.0002 4.3E-09 76.5 12.7 86 618-703 11-98 (356)
140 PF13812 PPR_3: Pentatricopept 97.8 3.5E-05 7.6E-10 50.4 4.3 33 539-571 2-34 (34)
141 cd00189 TPR Tetratricopeptide 97.7 0.00028 6E-09 58.9 10.0 92 612-703 3-96 (100)
142 PRK10153 DNA-binding transcrip 97.7 0.0011 2.3E-08 74.0 16.7 140 534-675 333-487 (517)
143 KOG3060 Uncharacterized conser 97.7 0.0056 1.2E-07 58.8 18.8 163 513-679 58-229 (289)
144 PF13414 TPR_11: TPR repeat; P 97.7 8.6E-05 1.9E-09 58.1 5.9 64 640-703 2-66 (69)
145 PF09976 TPR_21: Tetratricopep 97.7 0.00078 1.7E-08 61.8 13.2 114 586-700 24-143 (145)
146 PF12895 Apc3: Anaphase-promot 97.7 3.8E-05 8.2E-10 62.9 3.9 78 622-700 2-83 (84)
147 COG3898 Uncharacterized membra 97.7 0.027 5.9E-07 57.4 24.4 249 450-712 133-398 (531)
148 KOG3081 Vesicle coat complex C 97.7 0.0034 7.4E-08 60.7 17.3 83 620-702 184-269 (299)
149 KOG4340 Uncharacterized conser 97.7 0.001 2.2E-08 64.9 13.5 196 511-712 14-215 (459)
150 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 48.4 3.4 31 205-235 1-31 (31)
151 KOG0553 TPR repeat-containing 97.7 0.00026 5.7E-09 69.6 9.7 89 616-704 88-178 (304)
152 PRK15331 chaperone protein Sic 97.6 0.00089 1.9E-08 60.5 12.0 90 614-703 42-133 (165)
153 PF09976 TPR_21: Tetratricopep 97.6 0.0019 4E-08 59.3 14.6 123 542-668 16-145 (145)
154 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00054 1.2E-08 60.4 10.7 93 612-704 5-105 (119)
155 KOG3060 Uncharacterized conser 97.6 0.0054 1.2E-07 58.9 17.4 161 541-705 55-221 (289)
156 KOG2053 Mitochondrial inherita 97.6 0.22 4.7E-06 56.7 36.3 159 540-702 438-606 (932)
157 PRK14720 transcript cleavage f 97.6 0.011 2.3E-07 69.0 23.4 172 374-575 30-204 (906)
158 PF01535 PPR: PPR repeat; Int 97.6 8.4E-05 1.8E-09 47.3 3.4 31 539-569 1-31 (31)
159 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.2E-08 58.6 11.5 102 576-677 5-112 (119)
160 KOG0550 Molecular chaperone (D 97.5 0.00097 2.1E-08 68.2 12.0 162 539-705 169-351 (486)
161 PLN03088 SGT1, suppressor of 97.5 0.00082 1.8E-08 71.8 12.4 100 583-685 12-114 (356)
162 PF13432 TPR_16: Tetratricopep 97.5 0.00022 4.8E-09 55.0 5.8 58 647-704 3-60 (65)
163 PRK02603 photosystem I assembl 97.5 0.0018 3.8E-08 61.5 13.2 130 537-690 34-166 (172)
164 CHL00033 ycf3 photosystem I as 97.5 0.0007 1.5E-08 64.0 9.9 94 609-702 35-140 (168)
165 PRK02603 photosystem I assembl 97.4 0.00098 2.1E-08 63.3 10.4 80 611-690 37-121 (172)
166 KOG3081 Vesicle coat complex C 97.4 0.012 2.6E-07 57.1 16.6 141 558-705 93-237 (299)
167 PF13432 TPR_16: Tetratricopep 97.4 0.0006 1.3E-08 52.5 6.4 61 615-675 3-65 (65)
168 PF14559 TPR_19: Tetratricopep 97.3 0.00045 9.8E-09 53.8 5.7 53 652-704 2-54 (68)
169 KOG1914 mRNA cleavage and poly 97.3 0.39 8.4E-06 51.6 34.4 210 489-701 310-536 (656)
170 CHL00033 ycf3 photosystem I as 97.3 0.011 2.4E-07 55.8 15.3 80 538-620 35-117 (168)
171 PF05843 Suf: Suppressor of fo 97.2 0.0058 1.2E-07 62.9 14.2 134 539-675 2-141 (280)
172 cd00189 TPR Tetratricopeptide 97.2 0.0025 5.5E-08 52.9 9.8 59 541-601 3-62 (100)
173 COG4235 Cytochrome c biogenesi 97.2 0.002 4.3E-08 64.1 10.0 102 606-707 153-259 (287)
174 PF13431 TPR_17: Tetratricopep 97.2 0.00025 5.4E-09 46.0 2.4 33 664-696 2-34 (34)
175 KOG1538 Uncharacterized conser 97.2 0.092 2E-06 57.0 21.9 244 141-466 601-846 (1081)
176 PF13371 TPR_9: Tetratricopept 97.1 0.0012 2.6E-08 52.2 6.2 57 649-705 3-59 (73)
177 PRK10153 DNA-binding transcrip 97.1 0.0099 2.1E-07 66.4 15.2 133 569-705 333-483 (517)
178 PRK15363 pathogenicity island 97.1 0.0078 1.7E-07 54.3 11.6 85 544-633 41-127 (157)
179 PF14559 TPR_19: Tetratricopep 97.1 0.00048 1E-08 53.7 3.1 61 621-681 3-65 (68)
180 PF12895 Apc3: Anaphase-promot 97.0 0.0016 3.4E-08 53.3 5.9 78 551-634 2-83 (84)
181 COG3898 Uncharacterized membra 97.0 0.22 4.8E-06 51.1 21.8 116 585-703 166-291 (531)
182 KOG1538 Uncharacterized conser 97.0 0.096 2.1E-06 56.9 20.2 49 583-641 757-806 (1081)
183 PF04840 Vps16_C: Vps16, C-ter 97.0 0.59 1.3E-05 48.8 29.2 121 513-653 183-303 (319)
184 KOG1130 Predicted G-alpha GTPa 97.0 0.0049 1.1E-07 62.9 10.0 257 447-703 27-343 (639)
185 PF13414 TPR_11: TPR repeat; P 96.9 0.0015 3.3E-08 51.0 5.0 64 609-672 3-69 (69)
186 PF12688 TPR_5: Tetratrico pep 96.9 0.013 2.9E-07 50.9 10.6 87 615-701 7-101 (120)
187 COG4700 Uncharacterized protei 96.8 0.11 2.4E-06 47.6 16.3 151 549-703 67-221 (251)
188 COG4700 Uncharacterized protei 96.8 0.025 5.3E-07 51.7 12.1 104 602-705 82-190 (251)
189 PRK10803 tol-pal system protei 96.8 0.0084 1.8E-07 60.5 10.2 94 611-704 145-246 (263)
190 PF04840 Vps16_C: Vps16, C-ter 96.8 0.81 1.8E-05 47.8 24.8 109 408-532 179-287 (319)
191 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0056 1.2E-07 64.8 8.5 65 640-704 74-141 (453)
192 PF10037 MRP-S27: Mitochondria 96.7 0.016 3.5E-07 62.0 12.0 113 175-287 68-186 (429)
193 PF10037 MRP-S27: Mitochondria 96.7 0.016 3.4E-07 62.1 11.8 120 133-252 61-186 (429)
194 KOG2280 Vacuolar assembly/sort 96.7 1.6 3.5E-05 49.0 28.9 102 515-632 692-793 (829)
195 PF13371 TPR_9: Tetratricopept 96.7 0.0052 1.1E-07 48.5 6.2 64 617-680 3-68 (73)
196 PF12688 TPR_5: Tetratrico pep 96.6 0.034 7.4E-07 48.4 11.4 91 544-634 7-100 (120)
197 PF14938 SNAP: Soluble NSF att 96.6 0.074 1.6E-06 55.0 16.0 116 545-675 101-230 (282)
198 PF13428 TPR_14: Tetratricopep 96.6 0.0035 7.5E-08 43.7 4.1 42 642-683 2-43 (44)
199 PF06239 ECSIT: Evolutionarily 96.6 0.03 6.5E-07 53.1 11.4 118 469-601 44-167 (228)
200 KOG0543 FKBP-type peptidyl-pro 96.6 0.023 4.9E-07 58.9 11.5 83 642-750 258-340 (397)
201 PRK10866 outer membrane biogen 96.5 0.26 5.6E-06 49.5 18.7 169 514-703 39-240 (243)
202 PF07079 DUF1347: Protein of u 96.5 1.4 3.1E-05 46.5 32.9 74 628-702 443-522 (549)
203 KOG4555 TPR repeat-containing 96.5 0.02 4.3E-07 48.9 8.5 89 617-705 51-145 (175)
204 KOG2041 WD40 repeat protein [G 96.5 1.8 3.8E-05 48.1 25.0 20 446-465 932-951 (1189)
205 PF13281 DUF4071: Domain of un 96.4 0.38 8.2E-06 50.6 19.5 160 512-674 146-338 (374)
206 PF08579 RPM2: Mitochondrial r 96.4 0.029 6.4E-07 47.0 9.1 81 105-185 27-116 (120)
207 COG0457 NrfG FOG: TPR repeat [ 96.4 1.2 2.5E-05 44.0 25.2 194 507-704 59-265 (291)
208 PRK11906 transcriptional regul 96.4 0.14 2.9E-06 54.7 16.1 158 539-700 252-432 (458)
209 PF08579 RPM2: Mitochondrial r 96.4 0.027 5.8E-07 47.2 8.5 79 208-286 29-116 (120)
210 PF06239 ECSIT: Evolutionarily 96.4 0.03 6.5E-07 53.1 9.9 97 527-624 34-153 (228)
211 KOG2041 WD40 repeat protein [G 96.4 2.3 5E-05 47.2 27.3 77 381-463 828-904 (1189)
212 PF14938 SNAP: Soluble NSF att 96.2 0.14 3E-06 53.0 14.9 107 582-704 103-225 (282)
213 KOG0550 Molecular chaperone (D 96.2 0.65 1.4E-05 48.3 18.8 145 483-635 180-347 (486)
214 PF07079 DUF1347: Protein of u 96.1 2.3 5E-05 45.0 37.2 457 150-647 18-531 (549)
215 PRK10803 tol-pal system protei 96.1 0.048 1E-06 55.1 10.9 92 584-675 154-251 (263)
216 PF05843 Suf: Suppressor of fo 96.1 0.084 1.8E-06 54.4 12.6 124 475-601 4-135 (280)
217 KOG2280 Vacuolar assembly/sort 96.1 3.5 7.7E-05 46.5 25.7 118 568-701 679-796 (829)
218 KOG2796 Uncharacterized conser 95.9 0.2 4.4E-06 48.6 13.3 136 440-577 180-323 (366)
219 COG4235 Cytochrome c biogenesi 95.8 0.19 4.2E-06 50.3 13.3 103 570-675 152-261 (287)
220 PRK11906 transcriptional regul 95.8 0.11 2.4E-06 55.3 12.0 117 588-704 273-401 (458)
221 COG5107 RNA14 Pre-mRNA 3'-end 95.7 3.4 7.3E-05 43.7 29.6 143 508-655 398-549 (660)
222 PF13424 TPR_12: Tetratricopep 95.7 0.014 3E-07 46.7 4.2 61 643-703 7-74 (78)
223 KOG2796 Uncharacterized conser 95.7 1 2.3E-05 43.9 16.9 165 510-675 139-320 (366)
224 PF03704 BTAD: Bacterial trans 95.7 0.14 3.1E-06 46.8 11.3 107 583-703 16-124 (146)
225 PF13424 TPR_12: Tetratricopep 95.6 0.016 3.5E-07 46.4 4.2 60 611-670 7-75 (78)
226 PF04184 ST7: ST7 protein; In 95.6 0.23 4.9E-06 53.1 13.4 149 550-713 180-333 (539)
227 COG5107 RNA14 Pre-mRNA 3'-end 95.5 4 8.8E-05 43.1 26.6 155 521-679 380-540 (660)
228 KOG1130 Predicted G-alpha GTPa 95.3 0.1 2.2E-06 53.7 9.5 127 475-601 198-343 (639)
229 PRK10866 outer membrane biogen 95.3 3.6 7.8E-05 41.3 20.7 62 105-168 34-99 (243)
230 COG0457 NrfG FOG: TPR repeat [ 95.3 3.2 6.9E-05 40.7 24.4 218 451-673 37-268 (291)
231 PF13525 YfiO: Outer membrane 95.1 1.1 2.4E-05 43.6 16.2 49 648-696 148-199 (203)
232 KOG0543 FKBP-type peptidyl-pro 95.1 0.48 1E-05 49.5 13.7 137 546-704 216-355 (397)
233 KOG1941 Acetylcholine receptor 95.1 0.83 1.8E-05 46.6 14.8 161 540-700 85-271 (518)
234 PF13525 YfiO: Outer membrane 95.1 1.2 2.7E-05 43.3 16.3 143 540-704 7-170 (203)
235 PF13512 TPR_18: Tetratricopep 94.9 0.31 6.6E-06 43.4 10.1 73 618-690 19-99 (142)
236 PF09205 DUF1955: Domain of un 94.9 1.6 3.5E-05 37.9 13.7 140 549-707 13-152 (161)
237 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.79 1.7E-05 49.1 14.7 63 537-601 74-140 (453)
238 KOG1258 mRNA processing protei 94.6 9 0.0002 42.4 31.9 183 505-690 295-490 (577)
239 PF00515 TPR_1: Tetratricopept 94.4 0.068 1.5E-06 34.5 3.9 33 642-674 2-34 (34)
240 PF07719 TPR_2: Tetratricopept 94.4 0.099 2.1E-06 33.6 4.5 33 642-674 2-34 (34)
241 PF12921 ATP13: Mitochondrial 94.2 0.27 6E-06 43.3 8.4 78 574-651 3-98 (126)
242 smart00299 CLH Clathrin heavy 94.2 1.7 3.6E-05 39.3 14.0 67 573-652 69-136 (140)
243 KOG1585 Protein required for f 94.2 2.5 5.4E-05 41.0 14.9 87 611-698 152-250 (308)
244 PF12921 ATP13: Mitochondrial 94.2 0.1 2.2E-06 46.0 5.5 53 567-619 46-98 (126)
245 KOG2610 Uncharacterized conser 93.9 1.4 3E-05 44.6 13.3 111 521-635 117-235 (491)
246 KOG3941 Intermediate in Toll s 93.8 0.42 9.1E-06 46.9 9.3 100 525-625 52-174 (406)
247 COG3118 Thioredoxin domain-con 93.8 5.3 0.00011 40.2 17.0 142 546-690 142-287 (304)
248 KOG4234 TPR repeat-containing 93.8 0.34 7.5E-06 45.1 8.2 88 617-704 103-197 (271)
249 COG1729 Uncharacterized protei 93.7 0.4 8.7E-06 47.5 9.1 82 621-704 153-244 (262)
250 PF13512 TPR_18: Tetratricopep 93.6 1.3 2.9E-05 39.5 11.4 114 545-675 17-133 (142)
251 KOG2066 Vacuolar assembly/sort 93.4 18 0.00038 41.4 23.3 48 275-322 393-440 (846)
252 COG3118 Thioredoxin domain-con 93.3 1.9 4.1E-05 43.3 13.1 119 582-704 143-265 (304)
253 smart00299 CLH Clathrin heavy 93.3 4.5 9.7E-05 36.5 15.1 85 243-331 11-95 (140)
254 PF03704 BTAD: Bacterial trans 93.2 0.56 1.2E-05 42.9 9.0 67 542-610 66-137 (146)
255 KOG2114 Vacuolar assembly/sort 92.8 23 0.0005 40.9 28.4 116 178-301 339-458 (933)
256 KOG2114 Vacuolar assembly/sort 92.7 23 0.0005 40.9 22.3 175 106-302 337-518 (933)
257 PRK15331 chaperone protein Sic 92.7 0.59 1.3E-05 42.7 8.0 82 519-601 49-133 (165)
258 COG4785 NlpI Lipoprotein NlpI, 92.4 5.4 0.00012 38.0 13.9 158 538-704 99-266 (297)
259 COG4105 ComL DNA uptake lipopr 92.4 11 0.00024 37.3 16.7 141 538-704 34-196 (254)
260 PF04053 Coatomer_WDAD: Coatom 92.3 1.8 4E-05 47.4 12.8 130 549-705 272-403 (443)
261 KOG2066 Vacuolar assembly/sort 92.1 17 0.00037 41.5 19.6 167 211-406 363-536 (846)
262 COG1729 Uncharacterized protei 92.0 1.3 2.8E-05 44.0 10.0 90 586-675 154-249 (262)
263 KOG2610 Uncharacterized conser 92.0 1.2 2.5E-05 45.1 9.6 159 550-711 115-283 (491)
264 COG4105 ComL DNA uptake lipopr 91.8 14 0.00031 36.5 19.8 178 505-704 33-233 (254)
265 PF10300 DUF3808: Protein of u 91.8 4.9 0.00011 44.8 15.7 116 586-704 246-376 (468)
266 KOG1920 IkappaB kinase complex 91.8 30 0.00064 41.7 21.8 99 187-332 894-992 (1265)
267 PF10300 DUF3808: Protein of u 91.4 7.1 0.00015 43.5 16.4 117 551-669 246-375 (468)
268 PF13181 TPR_8: Tetratricopept 91.3 0.33 7.1E-06 31.2 3.6 31 643-673 3-33 (34)
269 PF04053 Coatomer_WDAD: Coatom 91.1 2.4 5.1E-05 46.6 12.0 158 214-402 271-429 (443)
270 KOG3941 Intermediate in Toll s 91.1 1.7 3.8E-05 42.8 9.6 111 293-403 53-187 (406)
271 PRK09687 putative lyase; Provi 91.1 20 0.00044 36.8 22.5 80 506-588 141-221 (280)
272 PF04184 ST7: ST7 protein; In 90.9 6.2 0.00013 42.7 14.2 99 578-676 264-381 (539)
273 KOG1941 Acetylcholine receptor 90.8 6.4 0.00014 40.5 13.5 127 543-669 127-274 (518)
274 KOG4555 TPR repeat-containing 90.5 3.2 6.9E-05 36.0 9.5 50 517-566 53-105 (175)
275 PF13176 TPR_7: Tetratricopept 89.8 0.56 1.2E-05 30.7 3.7 26 677-702 1-26 (36)
276 PF09613 HrpB1_HrpK: Bacterial 89.5 11 0.00024 34.4 12.8 88 582-672 19-108 (160)
277 PF13428 TPR_14: Tetratricopep 89.1 1.2 2.6E-05 30.7 5.2 33 540-574 3-35 (44)
278 PF13281 DUF4071: Domain of un 89.0 12 0.00026 39.8 14.5 28 574-601 306-333 (374)
279 PF13176 TPR_7: Tetratricopept 88.9 0.66 1.4E-05 30.4 3.5 28 643-670 1-28 (36)
280 KOG0890 Protein kinase of the 88.7 93 0.002 40.9 27.5 307 380-705 1388-1732(2382)
281 PF02259 FAT: FAT domain; Int 88.6 17 0.00036 38.9 16.4 149 536-686 144-303 (352)
282 KOG4648 Uncharacterized conser 88.5 0.81 1.7E-05 46.2 5.3 113 579-698 103-218 (536)
283 PF13170 DUF4003: Protein of u 87.4 13 0.00027 38.5 13.4 62 555-617 160-225 (297)
284 PF00515 TPR_1: Tetratricopept 87.2 1.3 2.8E-05 28.4 4.1 32 539-572 2-33 (34)
285 COG3629 DnrI DNA-binding trans 87.1 3.8 8.3E-05 41.4 9.2 75 507-581 153-235 (280)
286 PF00637 Clathrin: Region in C 86.9 0.4 8.7E-06 43.7 2.1 86 346-434 13-98 (143)
287 PF09613 HrpB1_HrpK: Bacterial 86.6 3.7 8.1E-05 37.4 7.9 54 652-705 21-74 (160)
288 PF09205 DUF1955: Domain of un 86.4 22 0.00048 31.2 12.4 81 519-601 68-148 (161)
289 KOG4648 Uncharacterized conser 86.3 2.2 4.7E-05 43.3 6.8 88 545-643 104-200 (536)
290 KOG1920 IkappaB kinase complex 86.3 88 0.0019 38.0 20.4 110 509-635 941-1052(1265)
291 KOG3364 Membrane protein invol 86.1 7.2 0.00016 34.2 8.9 65 640-704 31-100 (149)
292 PRK10941 hypothetical protein; 86.1 4.6 0.0001 40.9 9.3 62 643-704 183-244 (269)
293 PF14853 Fis1_TPR_C: Fis1 C-te 85.9 2.7 5.8E-05 30.4 5.4 33 646-678 6-38 (53)
294 PF14853 Fis1_TPR_C: Fis1 C-te 85.1 5 0.00011 29.0 6.4 50 678-753 4-53 (53)
295 TIGR02561 HrpB1_HrpK type III 84.8 4.9 0.00011 36.0 7.6 53 653-705 22-74 (153)
296 COG4785 NlpI Lipoprotein NlpI, 84.6 2.5 5.4E-05 40.2 6.0 90 583-675 75-167 (297)
297 KOG1586 Protein required for f 84.3 34 0.00073 33.3 13.3 24 652-675 165-188 (288)
298 PF06552 TOM20_plant: Plant sp 83.8 6.5 0.00014 36.5 8.2 47 657-703 51-101 (186)
299 PRK12798 chemotaxis protein; R 83.7 67 0.0014 34.4 23.7 206 520-752 125-348 (421)
300 PF13431 TPR_17: Tetratricopep 83.4 0.9 2E-05 29.3 1.9 20 609-628 13-32 (34)
301 PF07719 TPR_2: Tetratricopept 83.3 2.5 5.4E-05 26.8 4.1 31 540-572 3-33 (34)
302 KOG0403 Neoplastic transformat 83.0 34 0.00074 36.5 13.8 71 379-449 513-586 (645)
303 KOG0376 Serine-threonine phosp 82.7 2.2 4.8E-05 45.7 5.4 86 618-703 13-100 (476)
304 PF07035 Mic1: Colon cancer-as 82.4 32 0.0007 31.9 12.3 133 124-267 15-148 (167)
305 PF07035 Mic1: Colon cancer-as 82.2 43 0.00093 31.1 14.8 51 379-429 93-143 (167)
306 COG2976 Uncharacterized protei 81.3 50 0.0011 31.3 13.5 114 556-674 70-192 (207)
307 PF02259 FAT: FAT domain; Int 81.2 37 0.0008 36.2 14.7 65 640-704 145-213 (352)
308 PF11207 DUF2989: Protein of u 80.8 7.7 0.00017 36.9 7.7 76 619-695 117-198 (203)
309 PRK11619 lytic murein transgly 80.8 1.2E+02 0.0026 35.4 27.4 335 314-683 42-384 (644)
310 PF13170 DUF4003: Protein of u 80.6 20 0.00043 37.1 11.5 21 157-177 81-101 (297)
311 PF07721 TPR_4: Tetratricopept 79.7 2.8 6.1E-05 25.0 3.0 24 676-699 2-25 (26)
312 PF13374 TPR_10: Tetratricopep 79.6 3.9 8.4E-05 27.4 4.2 27 643-669 4-30 (42)
313 PF10602 RPN7: 26S proteasome 79.6 28 0.00062 32.8 11.4 57 509-565 38-100 (177)
314 smart00028 TPR Tetratricopepti 79.2 3.7 8E-05 24.9 3.9 30 644-673 4-33 (34)
315 COG3629 DnrI DNA-binding trans 78.8 7.9 0.00017 39.2 7.6 61 643-703 155-215 (280)
316 PF10345 Cohesin_load: Cohesin 78.2 1.4E+02 0.0031 34.7 35.2 56 647-702 540-604 (608)
317 PF10602 RPN7: 26S proteasome 78.1 14 0.0003 34.9 8.8 95 539-635 37-139 (177)
318 PF08631 SPO22: Meiosis protei 78.0 87 0.0019 32.1 23.4 59 514-573 128-192 (278)
319 KOG1258 mRNA processing protei 77.4 1.3E+02 0.0028 33.8 29.2 177 405-584 296-486 (577)
320 KOG1550 Extracellular protein 76.7 1.5E+02 0.0032 34.1 19.3 146 553-704 379-538 (552)
321 PF00637 Clathrin: Region in C 76.6 1.8 4E-05 39.2 2.4 85 245-332 13-97 (143)
322 PRK09687 putative lyase; Provi 76.6 96 0.0021 31.9 23.5 75 505-584 204-278 (280)
323 PRK15180 Vi polysaccharide bio 76.4 22 0.00049 38.0 10.2 120 550-674 301-424 (831)
324 PF04097 Nic96: Nup93/Nic96; 76.4 1.6E+02 0.0034 34.3 21.7 21 619-639 515-535 (613)
325 PF13174 TPR_6: Tetratricopept 76.4 4.6 9.9E-05 25.3 3.6 26 648-673 7-32 (33)
326 PF13181 TPR_8: Tetratricopept 76.2 4 8.7E-05 25.9 3.3 27 540-566 3-29 (34)
327 KOG1550 Extracellular protein 76.2 1E+02 0.0022 35.4 16.7 149 550-707 261-429 (552)
328 KOG0276 Vesicle coat complex C 76.0 31 0.00067 38.3 11.4 147 520-700 599-746 (794)
329 COG4649 Uncharacterized protei 75.7 46 0.00099 30.8 10.6 25 379-403 171-195 (221)
330 KOG1585 Protein required for f 75.7 62 0.0013 31.8 12.1 23 677-699 192-214 (308)
331 TIGR02561 HrpB1_HrpK type III 75.4 54 0.0012 29.6 10.9 63 586-651 23-87 (153)
332 KOG4570 Uncharacterized conser 75.3 22 0.00047 36.1 9.3 96 502-601 59-163 (418)
333 PHA02875 ankyrin repeat protei 75.0 1.3E+02 0.0029 32.8 17.6 148 180-340 72-230 (413)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 74.6 27 0.00059 28.7 8.0 49 633-681 34-82 (103)
335 KOG0545 Aryl-hydrocarbon recep 74.5 44 0.00095 32.8 10.8 89 616-704 185-293 (329)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 73.7 17 0.00036 29.9 6.6 60 120-181 24-84 (103)
337 PRK15180 Vi polysaccharide bio 73.6 18 0.00039 38.7 8.7 133 518-656 300-442 (831)
338 KOG4570 Uncharacterized conser 73.5 13 0.00027 37.7 7.2 106 58-168 58-165 (418)
339 KOG0276 Vesicle coat complex C 73.2 25 0.00055 38.9 9.9 100 285-401 648-747 (794)
340 PF13374 TPR_10: Tetratricopep 73.0 7.9 0.00017 25.8 4.3 28 539-566 3-30 (42)
341 PF13174 TPR_6: Tetratricopept 72.6 4.3 9.3E-05 25.4 2.7 28 677-704 2-29 (33)
342 COG4649 Uncharacterized protei 72.0 85 0.0018 29.2 15.7 121 548-669 68-195 (221)
343 PF02284 COX5A: Cytochrome c o 71.4 32 0.0007 28.6 7.9 49 633-681 37-85 (108)
344 KOG1464 COP9 signalosome, subu 69.9 1.2E+02 0.0027 30.2 14.4 218 443-670 71-328 (440)
345 COG3947 Response regulator con 69.9 14 0.00031 36.9 6.7 60 644-703 282-341 (361)
346 COG1747 Uncharacterized N-term 69.9 1.8E+02 0.0039 32.0 19.6 15 774-788 429-443 (711)
347 KOG4234 TPR repeat-containing 69.8 28 0.0006 33.0 8.1 59 616-674 141-201 (271)
348 PF06552 TOM20_plant: Plant sp 69.6 10 0.00023 35.2 5.3 32 554-587 51-83 (186)
349 PF09986 DUF2225: Uncharacteri 69.5 25 0.00054 34.4 8.4 63 643-705 120-195 (214)
350 PF10345 Cohesin_load: Cohesin 69.3 2.3E+02 0.005 33.0 33.3 193 62-265 28-251 (608)
351 TIGR02508 type_III_yscG type I 68.9 35 0.00075 28.3 7.4 84 256-343 22-105 (115)
352 PHA02875 ankyrin repeat protei 68.0 1.9E+02 0.0041 31.6 17.7 197 51-274 17-230 (413)
353 COG2909 MalT ATP-dependent tra 67.7 2.6E+02 0.0057 33.1 17.9 182 519-704 427-647 (894)
354 TIGR02508 type_III_yscG type I 67.0 42 0.00091 27.9 7.6 79 153-234 20-98 (115)
355 PF08631 SPO22: Meiosis protei 66.8 1.6E+02 0.0034 30.2 22.5 16 415-430 255-270 (278)
356 COG4455 ImpE Protein of avirul 66.6 1.3E+02 0.0028 29.2 12.0 123 541-675 4-139 (273)
357 KOG1586 Protein required for f 65.6 1.4E+02 0.0031 29.3 14.5 89 587-675 128-229 (288)
358 KOG1308 Hsp70-interacting prot 65.4 4.7 0.0001 41.2 2.5 57 650-706 157-213 (377)
359 KOG0551 Hsp90 co-chaperone CNS 65.2 21 0.00046 36.6 6.9 91 611-701 83-179 (390)
360 PF10579 Rapsyn_N: Rapsyn N-te 65.0 13 0.00028 29.3 4.2 47 585-631 18-65 (80)
361 PF04910 Tcf25: Transcriptiona 64.5 2E+02 0.0044 30.7 18.0 88 580-672 110-224 (360)
362 PF04910 Tcf25: Transcriptiona 64.1 1.1E+02 0.0024 32.8 12.7 118 570-703 36-167 (360)
363 COG4455 ImpE Protein of avirul 63.0 29 0.00062 33.4 6.9 64 613-676 5-70 (273)
364 KOG4279 Serine/threonine prote 63.0 1.4E+02 0.003 34.4 13.0 180 441-674 205-399 (1226)
365 COG4976 Predicted methyltransf 62.8 11 0.00023 36.5 4.1 58 618-675 4-63 (287)
366 PF02284 COX5A: Cytochrome c o 62.8 47 0.001 27.8 7.2 60 556-617 28-87 (108)
367 PF07721 TPR_4: Tetratricopept 62.7 14 0.00029 22.0 3.3 22 277-298 4-25 (26)
368 KOG1464 COP9 signalosome, subu 61.5 55 0.0012 32.5 8.7 89 615-703 71-173 (440)
369 KOG4507 Uncharacterized conser 61.4 34 0.00074 37.8 8.0 98 584-684 618-719 (886)
370 KOG4642 Chaperone-dependent E3 61.2 23 0.00049 34.6 6.0 51 652-702 55-105 (284)
371 PF14561 TPR_20: Tetratricopep 60.5 17 0.00037 29.8 4.6 44 661-704 8-51 (90)
372 KOG0890 Protein kinase of the 59.7 5.7E+02 0.012 34.3 33.3 58 574-635 1671-1728(2382)
373 PRK13800 putative oxidoreducta 59.3 4.2E+02 0.0091 32.6 22.1 28 396-423 625-652 (897)
374 PF09477 Type_III_YscG: Bacter 59.2 83 0.0018 26.6 8.1 79 254-335 21-99 (116)
375 PRK13342 recombination factor 58.7 2.7E+02 0.0059 30.5 15.1 116 454-587 154-279 (413)
376 PF07720 TPR_3: Tetratricopept 58.2 24 0.00053 23.1 4.1 32 643-674 3-36 (36)
377 KOG3824 Huntingtin interacting 58.0 28 0.00061 35.1 6.3 60 620-679 127-188 (472)
378 PF09670 Cas_Cas02710: CRISPR- 57.4 1.4E+02 0.003 32.3 12.1 120 549-669 142-269 (379)
379 smart00028 TPR Tetratricopepti 57.3 19 0.0004 21.4 3.6 27 540-566 3-29 (34)
380 KOG4642 Chaperone-dependent E3 56.2 1E+02 0.0022 30.3 9.4 82 517-600 20-105 (284)
381 PF13929 mRNA_stabil: mRNA sta 56.1 1.1E+02 0.0024 31.1 10.1 71 593-663 186-260 (292)
382 PF04190 DUF410: Protein of un 56.0 2.3E+02 0.0051 28.7 13.3 158 285-465 1-169 (260)
383 PF11768 DUF3312: Protein of u 55.9 1.2E+02 0.0026 33.8 11.1 24 511-534 412-435 (545)
384 PF11207 DUF2989: Protein of u 55.6 74 0.0016 30.5 8.4 43 586-628 153-197 (203)
385 KOG3824 Huntingtin interacting 55.0 33 0.00072 34.6 6.2 61 651-715 126-186 (472)
386 PF13762 MNE1: Mitochondrial s 55.0 99 0.0021 27.9 8.7 51 202-252 77-128 (145)
387 smart00386 HAT HAT (Half-A-TPR 53.9 20 0.00044 22.0 3.3 29 655-683 1-29 (33)
388 PRK10941 hypothetical protein; 52.3 75 0.0016 32.3 8.5 66 614-679 186-253 (269)
389 PF12862 Apc5: Anaphase-promot 51.9 43 0.00092 27.7 5.7 54 651-704 8-70 (94)
390 KOG0686 COP9 signalosome, subu 50.8 3.5E+02 0.0075 29.1 16.0 161 509-704 152-333 (466)
391 TIGR03504 FimV_Cterm FimV C-te 50.3 31 0.00067 23.8 3.7 25 544-568 5-29 (44)
392 TIGR03504 FimV_Cterm FimV C-te 50.3 30 0.00064 23.9 3.6 27 679-705 3-29 (44)
393 PF06957 COPI_C: Coatomer (COP 50.2 45 0.00097 36.1 6.8 45 630-674 287-333 (422)
394 PRK13342 recombination factor 48.8 3.5E+02 0.0076 29.6 13.9 44 206-249 229-275 (413)
395 COG2976 Uncharacterized protei 48.8 1.5E+02 0.0032 28.4 9.0 87 249-335 99-189 (207)
396 KOG2063 Vacuolar assembly/sort 48.1 5.8E+02 0.012 30.9 19.8 405 281-703 314-808 (877)
397 PF10579 Rapsyn_N: Rapsyn N-te 47.7 46 0.001 26.3 4.7 48 550-597 18-67 (80)
398 PF14863 Alkyl_sulf_dimr: Alky 47.7 62 0.0013 29.2 6.3 66 625-693 57-122 (141)
399 PF09477 Type_III_YscG: Bacter 47.3 1.5E+02 0.0033 25.0 7.9 81 151-234 19-99 (116)
400 PF13762 MNE1: Mitochondrial s 47.0 2.2E+02 0.0048 25.8 10.0 50 537-586 78-128 (145)
401 KOG2581 26S proteasome regulat 44.7 4.3E+02 0.0093 28.4 12.6 93 582-674 178-280 (493)
402 KOG3364 Membrane protein invol 44.7 2E+02 0.0044 25.6 8.6 32 646-677 76-107 (149)
403 PF15469 Sec5: Exocyst complex 44.5 2.8E+02 0.0061 26.2 11.4 88 578-681 91-179 (182)
404 PF11846 DUF3366: Domain of un 44.4 56 0.0012 31.3 6.1 37 636-672 139-175 (193)
405 PF12968 DUF3856: Domain of Un 44.3 2.1E+02 0.0046 24.8 10.0 60 643-702 57-127 (144)
406 KOG1811 Predicted Zn2+-binding 44.2 5.1E+02 0.011 29.2 13.4 98 610-710 557-655 (1141)
407 PF14561 TPR_20: Tetratricopep 43.7 1.8E+02 0.0039 23.8 8.0 62 640-701 21-85 (90)
408 KOG2758 Translation initiation 43.4 3.9E+02 0.0085 27.6 12.3 163 493-669 21-195 (432)
409 PRK11619 lytic murein transgly 43.0 6.1E+02 0.013 29.7 35.6 398 174-611 100-513 (644)
410 PF13934 ELYS: Nuclear pore co 42.8 3.3E+02 0.0072 26.9 11.3 71 579-653 114-184 (226)
411 cd08819 CARD_MDA5_2 Caspase ac 42.4 1.3E+02 0.0029 24.3 6.6 66 492-559 22-87 (88)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 42.3 1.4E+02 0.003 26.3 7.7 42 659-700 81-124 (126)
413 PF10366 Vps39_1: Vacuolar sor 42.0 1.5E+02 0.0031 25.4 7.5 27 206-232 41-67 (108)
414 KOG0292 Vesicle coat complex C 41.7 4.3E+02 0.0093 31.5 12.8 154 492-669 624-781 (1202)
415 PF07163 Pex26: Pex26 protein; 41.6 2.6E+02 0.0056 28.4 9.9 88 545-635 90-184 (309)
416 KOG0403 Neoplastic transformat 41.2 5E+02 0.011 28.2 20.6 58 511-568 513-573 (645)
417 PRK14015 pepN aminopeptidase N 40.8 4.6E+02 0.01 32.0 14.1 122 576-698 717-847 (875)
418 KOG0292 Vesicle coat complex C 40.7 33 0.00072 39.8 4.2 49 618-669 652-700 (1202)
419 PF10366 Vps39_1: Vacuolar sor 39.3 2.1E+02 0.0046 24.4 8.0 27 540-566 41-67 (108)
420 KOG3807 Predicted membrane pro 38.8 3E+02 0.0064 28.5 10.0 21 659-679 380-400 (556)
421 PF13934 ELYS: Nuclear pore co 38.7 2.8E+02 0.0061 27.4 10.1 113 520-642 91-205 (226)
422 TIGR02414 pepN_proteo aminopep 38.5 5.9E+02 0.013 31.1 14.4 122 576-698 707-837 (863)
423 PF11663 Toxin_YhaV: Toxin wit 38.4 41 0.00089 29.7 3.5 33 114-148 106-138 (140)
424 KOG0376 Serine-threonine phosp 38.2 65 0.0014 35.0 5.7 48 552-601 18-66 (476)
425 COG5159 RPN6 26S proteasome re 38.1 4.5E+02 0.0097 26.7 13.7 157 548-704 13-194 (421)
426 PF04090 RNA_pol_I_TF: RNA pol 37.3 3.9E+02 0.0084 25.8 10.6 28 540-567 43-70 (199)
427 PF14669 Asp_Glu_race_2: Putat 37.2 3.8E+02 0.0081 25.6 11.6 56 478-533 138-207 (233)
428 PF14689 SPOB_a: Sensor_kinase 37.1 53 0.0012 24.6 3.6 23 543-565 28-50 (62)
429 KOG4507 Uncharacterized conser 37.0 1.7E+02 0.0036 32.8 8.5 133 569-704 567-705 (886)
430 PHA03100 ankyrin repeat protei 37.0 6.3E+02 0.014 28.1 14.6 231 123-365 48-305 (480)
431 PF11846 DUF3366: Domain of un 35.8 96 0.0021 29.7 6.3 31 605-635 140-170 (193)
432 KOG0991 Replication factor C, 35.6 4.5E+02 0.0097 26.0 10.5 46 528-574 229-274 (333)
433 cd00280 TRFH Telomeric Repeat 35.5 2.2E+02 0.0047 26.9 7.8 30 647-677 117-146 (200)
434 COG2178 Predicted RNA-binding 34.7 4E+02 0.0086 25.5 9.4 50 517-566 39-97 (204)
435 KOG2396 HAT (Half-A-TPR) repea 34.6 6.8E+02 0.015 27.8 29.7 440 83-566 94-558 (568)
436 PHA02537 M terminase endonucle 34.6 3.7E+02 0.008 26.6 9.9 25 549-573 94-119 (230)
437 KOG4279 Serine/threonine prote 34.4 2.3E+02 0.0049 32.8 9.2 67 540-609 203-280 (1226)
438 PF08225 Antimicrobial19: Pseu 34.4 20 0.00043 19.8 0.6 12 805-816 10-21 (23)
439 PF07163 Pex26: Pex26 protein; 33.9 2.1E+02 0.0046 29.0 8.0 89 108-196 88-181 (309)
440 PF15161 Neuropep_like: Neurop 33.8 17 0.00037 25.9 0.5 17 799-816 11-27 (65)
441 KOG2300 Uncharacterized conser 33.6 6.9E+02 0.015 27.6 16.9 154 548-702 333-512 (629)
442 PF12862 Apc5: Anaphase-promot 32.8 1.3E+02 0.0029 24.7 5.8 26 646-671 46-71 (94)
443 COG2912 Uncharacterized conser 32.8 2.5E+02 0.0054 28.4 8.5 58 647-704 187-244 (269)
444 PF11663 Toxin_YhaV: Toxin wit 32.7 47 0.001 29.3 3.0 32 317-350 107-138 (140)
445 cd08819 CARD_MDA5_2 Caspase ac 32.4 2.7E+02 0.0058 22.7 6.9 65 258-324 21-85 (88)
446 PRK10564 maltose regulon perip 31.9 78 0.0017 32.4 4.9 41 540-580 259-299 (303)
447 smart00777 Mad3_BUB1_I Mad3/BU 31.8 1.3E+02 0.0029 26.4 5.7 68 626-699 50-123 (125)
448 PF14689 SPOB_a: Sensor_kinase 31.5 73 0.0016 23.9 3.6 28 574-601 24-51 (62)
449 KOG0686 COP9 signalosome, subu 30.5 5.4E+02 0.012 27.7 10.6 56 377-432 152-213 (466)
450 cd02679 MIT_spastin MIT: domai 30.2 28 0.0006 27.7 1.2 47 654-703 21-67 (79)
451 PF14669 Asp_Glu_race_2: Putat 30.0 5E+02 0.011 24.8 14.3 55 345-399 137-205 (233)
452 COG3947 Response regulator con 29.9 1.2E+02 0.0025 30.9 5.5 55 177-231 283-340 (361)
453 COG4976 Predicted methyltransf 29.9 81 0.0018 30.8 4.3 54 652-705 6-59 (287)
454 COG1747 Uncharacterized N-term 29.9 8.2E+02 0.018 27.3 19.3 159 436-601 65-233 (711)
455 KOG1498 26S proteasome regulat 29.7 7.3E+02 0.016 26.6 16.9 189 504-724 49-261 (439)
456 PF11848 DUF3368: Domain of un 29.6 1.3E+02 0.0029 21.1 4.4 31 216-246 14-44 (48)
457 KOG2034 Vacuolar sorting prote 29.4 1.1E+03 0.023 28.4 19.8 231 383-624 366-643 (911)
458 PF07575 Nucleopor_Nup85: Nup8 29.3 9.3E+02 0.02 27.7 19.4 210 250-480 308-538 (566)
459 COG0790 FOG: TPR repeat, SEL1 28.5 6.5E+02 0.014 25.7 18.2 48 655-705 205-267 (292)
460 PF08424 NRDE-2: NRDE-2, neces 28.4 7.1E+02 0.015 26.1 14.5 113 554-671 47-184 (321)
461 PF13929 mRNA_stabil: mRNA sta 28.0 6.7E+02 0.015 25.7 14.0 61 371-431 198-263 (292)
462 PF00244 14-3-3: 14-3-3 protei 27.7 6.2E+02 0.013 25.2 11.8 162 544-706 7-200 (236)
463 PRK14700 recombination factor 27.6 5.8E+02 0.013 26.4 10.2 53 537-589 122-177 (300)
464 KOG2168 Cullins [Cell cycle co 27.4 1.1E+03 0.024 28.1 15.7 24 279-302 330-353 (835)
465 COG5191 Uncharacterized conser 27.3 76 0.0016 32.4 3.8 58 622-679 120-180 (435)
466 KOG4077 Cytochrome c oxidase, 26.5 3.2E+02 0.0068 24.1 6.8 59 556-616 67-125 (149)
467 PRK10564 maltose regulon perip 26.5 1E+02 0.0022 31.5 4.7 38 308-345 260-297 (303)
468 PF11848 DUF3368: Domain of un 26.1 2.2E+02 0.0048 20.0 5.1 33 549-581 13-45 (48)
469 TIGR02270 conserved hypothetic 25.5 9.1E+02 0.02 26.4 24.8 169 110-296 45-213 (410)
470 PF04034 DUF367: Domain of unk 25.1 4.7E+02 0.01 23.0 7.7 58 609-666 66-124 (127)
471 COG4941 Predicted RNA polymera 24.8 8.3E+02 0.018 25.7 10.6 118 554-676 272-400 (415)
472 KOG1308 Hsp70-interacting prot 24.7 66 0.0014 33.3 3.0 49 551-601 127-176 (377)
473 TIGR02710 CRISPR-associated pr 24.3 9.2E+02 0.02 26.0 11.9 29 547-575 139-167 (380)
474 KOG4077 Cytochrome c oxidase, 23.5 3.3E+02 0.0072 23.9 6.4 46 633-678 76-121 (149)
475 KOG4334 Uncharacterized conser 23.3 49 0.0011 35.5 1.8 142 132-286 409-572 (650)
476 TIGR01503 MthylAspMut_E methyl 22.8 6.5E+02 0.014 27.7 9.9 123 486-615 68-217 (480)
477 KOG0889 Histone acetyltransfer 22.8 2.4E+03 0.053 30.4 27.7 116 547-665 2745-2875(3550)
478 PF08967 DUF1884: Domain of un 22.1 99 0.0021 24.5 2.8 28 733-760 6-33 (85)
479 PF04123 DUF373: Domain of unk 21.5 5.8E+02 0.013 27.1 9.2 83 659-769 29-113 (344)
480 PF11768 DUF3312: Protein of u 21.4 4.3E+02 0.0093 29.7 8.4 57 177-233 412-473 (545)
481 PF11838 ERAP1_C: ERAP1-like C 20.7 9.5E+02 0.021 24.9 17.8 148 523-670 56-230 (324)
482 PRK13800 putative oxidoreducta 20.6 1.6E+03 0.036 27.6 23.9 184 373-566 696-880 (897)
483 KOG3507 DNA-directed RNA polym 20.4 34 0.00074 24.9 0.0 15 801-815 20-34 (62)
484 smart00544 MA3 Domain in DAP-5 20.4 5.1E+02 0.011 21.9 7.5 22 280-301 8-29 (113)
485 KOG2422 Uncharacterized conser 20.3 9.4E+02 0.02 27.3 10.6 104 583-686 248-388 (665)
486 COG4941 Predicted RNA polymera 20.2 1E+03 0.022 25.0 12.8 119 521-642 270-399 (415)
487 KOG2034 Vacuolar sorting prote 20.1 1.6E+03 0.034 27.1 20.0 229 278-522 393-643 (911)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-148 Score=1324.04 Aligned_cols=772 Identities=37% Similarity=0.656 Sum_probs=754.4
Q ss_pred CCCCcchHHHHhcccC---hhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCccc
Q 003148 29 TPKDSPSIGSLKNCKT---LNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFM 105 (844)
Q Consensus 29 ~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~ 105 (844)
.|+..++..+++.|.. +..+.++|..+++.|+.+++.++|+||++|+++|+ ++.|+++|+ +|+.||+++
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~---~~~A~~~f~-----~m~~~d~~~ 154 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE---LVHAWYVFG-----KMPERDLFS 154 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC---hHHHHHHHh-----cCCCCCeeE
Confidence 4566677777877753 67789999999999999999999999999999999 999999999 999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 003148 106 YNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGE 185 (844)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 185 (844)
||+||++|++.|++++|+++|++|...|+.||.+||++++++|++.+++..+.++|..+++.|+.+|+.++|+||++|++
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 003148 186 CGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYI 265 (844)
Q Consensus 186 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 265 (844)
+|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|+++|..|
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 003148 266 DELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLS 345 (844)
Q Consensus 266 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 345 (844)
.+.|+.||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 003148 346 AVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESA 425 (844)
Q Consensus 346 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 425 (844)
++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------------------- 452 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---------------------- 452 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC
Q 003148 426 REVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC 505 (844)
Q Consensus 426 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 505 (844)
+|+++||+||.+|+++|+.++|+.+|++|.. +++||.+||+++|.+|++.|.++.++++|..+.+.|+.+
T Consensus 453 ---------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 453 ---------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred ---------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 7888888888888889999999999999986 599999999999999999999999999999999999999
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH 585 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (844)
|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
.|++++|.++|+.|.+.+|+.|+..||++|+++|+|+|++++|.+++++|+++||..+|++|+++|+.+|+.+.|+.+++
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999977999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Q 003148 666 RITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMN 745 (844)
Q Consensus 666 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 745 (844)
++++++|++++.|+.|+|+|+..|+|++|.++++.|+++|++|.||+|||++++++|.|++||++||+.++||.+|++|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCCcccccchHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccCCchhhhhHhhhcccceeEEee
Q 003148 746 CRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVR 825 (844)
Q Consensus 746 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~ 825 (844)
.+|++.||+||+..++ +++|++|+..|++||||||+|||||+||+|+||||+||||||+|||+++||||++++||||||
T Consensus 762 ~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 840 (857)
T PLN03077 762 EKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840 (857)
T ss_pred HHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEe
Confidence 9999999999999888 558889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCccccCCC
Q 003148 826 DNNRFHFFRQGSCSCSD 842 (844)
Q Consensus 826 d~~~~h~~~~g~csc~~ 842 (844)
|.+|||||++|+|||||
T Consensus 841 d~~rfh~f~~g~csc~d 857 (857)
T PLN03077 841 DTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCcceeCCCCcccCCC
Confidence 99999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.6e-125 Score=1098.44 Aligned_cols=613 Identities=36% Similarity=0.620 Sum_probs=602.8
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHH
Q 003148 201 ERNVVSWTSLICACARRDLPKEAVYLFFEMVEEG-IKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNA 279 (844)
Q Consensus 201 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 279 (844)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhH
Q 003148 280 LVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG 359 (844)
Q Consensus 280 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 359 (844)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..|+++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 003148 360 RMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS 439 (844)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 439 (844)
+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.+ +|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------------------------------KTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------CChhH
Confidence 99999999999999999999999999999999999999999988 77888
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 519 (844)
||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|+++|..+.+.|+.||..++|+||++|+|
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 520 CGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.+++|+.|+..+|++||++|+++|++++|.++|++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCccCCCCC
Q 003148 680 LLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTN 759 (844)
Q Consensus 680 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~ 759 (844)
.|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||.+||+.++||.+|.++..+|++.||+||+.+
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHhhhhhhhhHHHHHHHHhcCCCCCCcEEEEeccccCCchhhhhHhhhcccceeEEeecCCccccccCcccc
Q 003148 760 VLLDVDEQEKKYLLSHHSEKLAMAFGLISTSKTMPIRVVKNLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCS 839 (844)
Q Consensus 760 ~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~cs 839 (844)
++||+++++|+..|++||||||+|||||++|+|+||||+||||||+|||+|+||||++++|+|||||.+|||||++|+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 003148 840 CSDFW 844 (844)
Q Consensus 840 c~~~w 844 (844)
|||||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-85 Score=782.33 Aligned_cols=686 Identities=25% Similarity=0.397 Sum_probs=615.6
Q ss_pred CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 003148 99 TSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENC 178 (844)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 178 (844)
+.++..++|.+|.+|++.|++++|+.+|+.|.+.|++|+..+|..++++|.+.+.++.|.++|..+.+.|..+++.++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHH
Q 003148 179 LINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELG 258 (844)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 258 (844)
||++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003148 259 DRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRP 338 (844)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 338 (844)
.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 003148 339 DRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418 (844)
Q Consensus 339 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 418 (844)
|..||++++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------- 351 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--------------- 351 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHH
Q 003148 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYI 498 (844)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 498 (844)
+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+
T Consensus 352 ----------------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 352 ----------------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred ----------------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH
Q 003148 499 EKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG 578 (844)
Q Consensus 499 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 578 (844)
.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|.++|+.++|+++|++|.+ +++||.+||.+
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 69999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 658 (844)
++.+|++.|.+++|.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999998 899999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEecCCCCCcchH
Q 003148 659 IAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK-EQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMN 735 (844)
Q Consensus 659 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~ 735 (844)
+|.++++++.+ ..|+. .+|..+..+|.+.|++++|.++++.|+ +.|+.+....- ...-
T Consensus 572 ~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y------------------~~lv 632 (857)
T PLN03077 572 MAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY------------------ACVV 632 (857)
T ss_pred HHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH------------------HHHH
Confidence 99999999987 45654 688899999999999999999999999 56764432100 0011
Q ss_pred HHH---HHHHHHHHHHHHcCccCCCCCcccccchHHHhhhhhhhhHHHH-HHHHhcCCCCCCcEEEEeccccCCchhhhh
Q 003148 736 NIS---SMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLA-MAFGLISTSKTMPIRVVKNLRLCCDCHSFA 811 (844)
Q Consensus 736 ~i~---~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~ 811 (844)
.++ ..+++..+.+++++..||...|..-+..+...+.+- -.|+.| ..+.+.|...+.-+-+..-....|+-.++.
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 111 134555666667789999877655555443322111 112222 335566655555544444456788899999
Q ss_pred HhhhcccceeEEe-------ecCCccccccCcccc
Q 003148 812 KLVSKVYDREIIV-------RDNNRFHFFRQGSCS 839 (844)
Q Consensus 812 ~~~s~~~~~~~~~-------~d~~~~h~~~~g~cs 839 (844)
+.-..|..+.+-. --.+..|-|..|--|
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 9888777662221 113567888666544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-71 Score=646.18 Aligned_cols=475 Identities=25% Similarity=0.387 Sum_probs=458.2
Q ss_pred CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 003148 99 TSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFG-ILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN 177 (844)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 177 (844)
..++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34677899999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchH
Q 003148 178 CLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLEL 257 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 257 (844)
+|+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003148 258 GDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPR 337 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 337 (844)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 003148 338 PDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLI 417 (844)
Q Consensus 338 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 417 (844)
||..||++++.+|++.|+++.|+++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------------- 388 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------------- 388 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHH
Q 003148 418 KNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAY 497 (844)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 497 (844)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++|.++|..
T Consensus 389 -----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 389 -----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred -----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-h
Q 003148 498 IEK-NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-I 574 (844)
Q Consensus 498 ~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ 574 (844)
|.+ .|+.|+..+|++++++|+++|++++|.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+. .
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~ 529 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN 529 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc
Confidence 975 6999999999999999999999999999999998 78999999999999999999999999999976 77864 6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
+|..+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 899999999999999999999999988 67653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-70 Score=636.49 Aligned_cols=534 Identities=17% Similarity=0.207 Sum_probs=482.9
Q ss_pred CCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 003148 60 LGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKF 139 (844)
Q Consensus 60 ~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 139 (844)
-.++...+..++..+.++|+ +++|+++|++|.+.....++...++.++.+|.+.|..++|+.+|+.|.. ||..
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~---l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR---IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 34578889999999999999 9999999996665444556666777888899999999999999999975 9999
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcccHHHHHHHHH
Q 003148 140 TFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS----ERNVVSWTSLICACA 215 (844)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~ 215 (844)
+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++||+||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 589999999999999
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhcCCHHHH
Q 003148 216 RRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDE--LGMKANALMVNALVDMYMKCGAVDTA 293 (844)
Q Consensus 216 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A 293 (844)
+.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999987 67899999999999999999999999
Q ss_pred HHHHHhcCCC----CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHh
Q 003148 294 KQLFGECKDR----NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRN 369 (844)
Q Consensus 294 ~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 369 (844)
.++|++|.+. +.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|..|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999864 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc
Q 003148 370 GLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ 449 (844)
Q Consensus 370 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 449 (844)
|+.||..+|++||++|+++|++++|.++|++|...+.. ||.++||+||.+|++
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~---------------------------PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR---------------------------PTVSTMNALITALCE 731 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------------------------CCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999642211 788888888899999
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhH----HhcCCHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF----ARCGDPQR 525 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~k~g~~~~ 525 (844)
.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .++++..+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 44555544
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC
Q 003148 526 AMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGV 605 (844)
Q Consensus 526 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 605 (844)
+...|+.+...+...|+ ++|+.+|++|++.|+.||.+||..++.++...+..+.+..+++.|.. .+.
T Consensus 812 ~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~ 878 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SAD 878 (1060)
T ss_pred hhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCC
Confidence 54555444444444454 56999999999999999999999999777788888888888877765 567
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCCCChH
Q 003148 606 SPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVEPNDV 642 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~~~ 642 (844)
.|+..+|++||+++++. .++|..++++| ++.|+..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77888999999998532 46899999999 7888765
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-65 Score=601.37 Aligned_cols=552 Identities=19% Similarity=0.264 Sum_probs=471.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccH-----HHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 003148 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSW-----TSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVC 244 (844)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 244 (844)
.++...|..+++.++++|++++|+++|++|++++.+.| +.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 46677888889999999999999999999988766544 5566779999999999999999864 89999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCceehHHHHHHHHHcCC
Q 003148 245 VISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK----DRNLVLCNTIMSNYVRLGL 320 (844)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 320 (844)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4789999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH--hCCCchhhHHHHHHHHHHHcCCHHHHHHHH
Q 003148 321 AREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLR--NGLEGWDSICNTMIDMYMKCGKQEMACRIF 398 (844)
Q Consensus 321 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (844)
+++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhH
Q 003148 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478 (844)
Q Consensus 399 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 478 (844)
+.|.+.++. ++..+||++|.+|++.|++++|+++|++|.+.|+.||.+||+.+
T Consensus 603 ~~M~e~gi~---------------------------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 603 QMIHEYNIK---------------------------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred HHHHHcCCC---------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999874432 57788888888888899999999999999999999999999999
Q ss_pred HHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCCh
Q 003148 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME----KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 479 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 554 (844)
+.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|+.
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999995 68999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcC-------
Q 003148 555 EQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLG----RAG------- 623 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g------- 623 (844)
++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++++++. +++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~ 814 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVV 814 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999988 899999999999987743 222
Q ss_pred ------------ChHHHHHHHHhC---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHH
Q 003148 624 ------------LLGEALDLIKSM---PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE-LDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 624 ------------~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~ 687 (844)
..++|..+|++| ++.||..+|+.+++++.+.+..+.+..+++.+.. -.+.+..+|..|.+.+
T Consensus 815 ~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~-- 892 (1060)
T PLN03218 815 SFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF-- 892 (1060)
T ss_pred hhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--
Confidence 236799999999 8999999999999777788888888888876542 3445567888888876
Q ss_pred cCCc-hHHHHHHHHHHhCCCccCCcc-cEEEECCEEEEEecCCCCCcchHH--HHHHHHHHHHHHHHcCccCCCCCcccc
Q 003148 688 AGKW-TNVARVRLQMKEQGIRKLPGS-SSIEVNGKVHEFTSGDESHPEMNN--ISSMLREMNCRLRDAGYVPDLTNVLLD 763 (844)
Q Consensus 688 ~g~~-~~a~~~~~~m~~~~~~~~~~~-s~~~~~~~~~~f~~~~~~~~~~~~--i~~~l~~l~~~~~~~g~~~~~~~~~~~ 763 (844)
|++ ++|..+++.|.+.|+.+.... .+ .+.-.++.|-. -+.+ +...|..+.+.+...-..|.....++.
T Consensus 893 -~~~~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~~------~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 893 -GEYDPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELPV------FAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred -ccChHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCcc------hhHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 444 589999999999998655431 11 22222333322 2222 334555666555443355665554555
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-34 Score=351.52 Aligned_cols=645 Identities=12% Similarity=0.051 Sum_probs=478.1
Q ss_pred cChhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHH
Q 003148 43 KTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEA 122 (844)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 122 (844)
+....+..+...+++.. +++...+..+...+...|+ .+.|...|+.++ ...+.+...|..++..+...|++++|
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~--~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 173 NRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGN---IELALAAYRKAI--ALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555555554444332 2234444445555555555 555555555444 22233444455555555555555555
Q ss_pred HHHHHHHHhCCC--------------------------------CCCc-ccHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 003148 123 ISLYVELAGFGI--------------------------------LPDK-FTFPFVLNACTKSSAFGEGVQVHGAIVKMGF 169 (844)
Q Consensus 123 ~~~~~~m~~~g~--------------------------------~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 169 (844)
...++.+.+... .|+. ..+..+...+...|+++.|...+..+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 325 (899)
T TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA- 325 (899)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 555555443221 1221 112223334455666777777777666654
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 003148 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVI 246 (844)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 246 (844)
+.+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34556666777777788888888888877653 345567777888888888888888888877643 12344556666
Q ss_pred HHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHH
Q 003148 247 SACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLARE 323 (844)
Q Consensus 247 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 323 (844)
..+...|+.+.|.+.+..+.+... .+......++..|.+.|++++|.++++++.. .+..+|+.+...|...|++++
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 677778888888888888777652 2344556677888888888888888888764 355678888888999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 324 ALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 324 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
|.+.|.++.+... .+...+..+...+...|+.+.|.+.+..+++.. +.+..++..+...|.+.|+.++|...|+++..
T Consensus 484 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988876532 234456667777788889999999988887764 33567788888899999999999999988754
Q ss_pred ---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHh
Q 003148 404 ---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVG 477 (844)
Q Consensus 404 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 477 (844)
.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..
T Consensus 562 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3556778888999999999999999988764 356688889999999999999999999987643 224556777
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 554 (844)
+..++...|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+. ..+...|..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 7778888999999999998887754 4457788889999999999999999999887 34567788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 555 EQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
++|++.|+++.+ ..|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|+.++|.+.|++
T Consensus 720 ~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999998 5677777888889999999999999999998872 234477888899999999999999999998
Q ss_pred C-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+ ...| +..+++.+...+...|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8 3344 67789999999999999 889999999999999999999999999999999999999999998764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-34 Score=352.03 Aligned_cols=606 Identities=13% Similarity=0.105 Sum_probs=507.7
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHG 162 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (844)
++.|...|+.+++. .+.+...+..+...+...|++++|...|+++.... +.+...+..+...+...|+++.|...+.
T Consensus 277 ~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 277 YEDARETLQDALKS--APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555544321 11122233444456677888888888888877643 3345567777888889999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 003148 163 AIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNS 239 (844)
Q Consensus 163 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 239 (844)
.+.+.. +.+..+++.+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|+++.+.... +.
T Consensus 354 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 431 (899)
T TIGR02917 354 PALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LG 431 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-ch
Confidence 998776 56778899999999999999999999998764 34567888889999999999999999999876533 23
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHH
Q 003148 240 VTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYV 316 (844)
Q Consensus 240 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 316 (844)
.....++..+.+.|+++.|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...+..+...+.
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 445567778889999999999999998753 55778999999999999999999999998754 35567888899999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHH
Q 003148 317 RLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACR 396 (844)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 396 (844)
..|++++|.+.|+++..... .+..++..+...+...|+.+.+...+..+.+.. +.+...+..++..|.+.|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999988643 356678888888899999999999999988765 3456677889999999999999999
Q ss_pred HHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHHHHHHHHhCCccc
Q 003148 397 IFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKV 470 (844)
Q Consensus 397 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 470 (844)
+++.+.+ .+...|..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 9999874 4677899999999999999999999998754 356678889999999999999999999998742 33
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAM 548 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 548 (844)
+..++..+...+...|+++.|..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL 746 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 46778888888999999999999999998876 4567788889999999999999999999886 45557788899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 627 (844)
.+.|+.++|.+.++++++ ..|+ ...+..+...|...|+.++|.++|+++.+. .+++...+..+..++.+.|+ .+
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HH
Confidence 999999999999999998 4455 467888888999999999999999999882 23457789999999999999 88
Q ss_pred HHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 628 ALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 628 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|+++++++ ...| +..+|..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999988 5555 4568888888999999999999999999999999999999999999999999999999998863
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=3.7e-34 Score=245.38 Aligned_cols=106 Identities=63% Similarity=1.003 Sum_probs=98.3
Q ss_pred cccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCccCCCCCcccccchHHH--------hhhhhhhhHHHHH
Q 003148 711 GSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEK--------KYLLSHHSEKLAM 782 (844)
Q Consensus 711 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~h~e~la~ 782 (844)
|+||+++ |.|++||.+||+. ++..++...||.|++..++|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899977 9999999999998 456677888999999999999888766 5688999999999
Q ss_pred HHHhcCCCCCCcEEEEecc-ccCCchhhhhHhhhcccceeEEeecCCcccccc
Q 003148 783 AFGLISTSKTMPIRVVKNL-RLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFR 834 (844)
Q Consensus 783 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 834 (844)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-24 Score=267.04 Aligned_cols=610 Identities=10% Similarity=-0.007 Sum_probs=410.2
Q ss_pred HHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH----------
Q 003148 72 CTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTF---------- 141 (844)
Q Consensus 72 ~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---------- 141 (844)
..+...++ .+.|++.++++. .+.+.|...+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 36 ~~~~~~~~---~d~a~~~l~kl~--~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 36 RLGEATHR---EDLVRQSLYRLE--LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHhhCC---hHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 34445555 666666666554 3444455556666666666666666666666666533 333221
Q ss_pred -------HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHH
Q 003148 142 -------PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN-CLINFYGECGDIVDGRRVFDEMSE--R-NVVSWTSL 210 (844)
Q Consensus 142 -------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l 210 (844)
....+.+...|++++|.+.++.+.+.. +++..... -+.......|+.++|++.|+++.. | +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 112234555666666666666666543 22221111 111112234666666666666553 2 23345556
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCC----------------CCCcch---HHHHHHHHHhcCCchHHHHHHHHHHHhCCC
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGI----------------KPNSVT---MVCVISACAKLQNLELGDRVCAYIDELGMK 271 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~----------------~pd~~t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 271 (844)
...+...|++++|+..|+++..... .++... +...+..+-.....+.+...+....+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 6666666666666666666644211 000000 111111111112233444455444433323
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh-hhHH---
Q 003148 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKD--R-NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR-VTML--- 344 (844)
Q Consensus 272 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~--- 344 (844)
|+.. ...+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|++.|++..+....... ..+.
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3322 22445667788999999999988754 3 5667888889999999999999999998875432211 1111
Q ss_pred ---------HHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CcchHHHH
Q 003148 345 ---------SAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-TVVSWNSL 412 (844)
Q Consensus 345 ---------~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l 412 (844)
..-..+...|++++|...+..+++... .+...+..|...|.+.|++++|++.|++..+ | +...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 112345678899999999999887643 3556677889999999999999999998875 3 44566667
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC------------ccccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHH
Q 003148 413 IAGLIKNGDVESAREVFSEMPGRD------------HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVA 479 (844)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 479 (844)
...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+.
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA 502 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLA 502 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 77774 467899999888776421 123444566778899999999999999874 464 34556677
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC----Hh---------HHHHHHH
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD----VS---------AWTAAIG 546 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~----~~---------~~~~li~ 546 (844)
..+...|+.++|...++.+.+... .+...+..+...+.+.|+.++|...++.++... .. .+..+..
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 788999999999999999887542 344445555556778999999999999886321 11 1234566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh
Q 003148 547 AMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 547 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 625 (844)
.+...|+.++|+.+++. ..++...+..+...+...|+.++|+..|+.+.+ ..|+ ...+..++.+|...|++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCH
Confidence 78899999999999871 233445677788899999999999999999988 4565 77888999999999999
Q ss_pred HHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCchHHHHH
Q 003148 626 GEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG------VHVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~ 697 (844)
++|++.+++. ...|+ ...+..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|.+.
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999987 45554 556777888889999999999999999998776543 556679999999999999999
Q ss_pred HHHHHh
Q 003148 698 RLQMKE 703 (844)
Q Consensus 698 ~~~m~~ 703 (844)
++....
T Consensus 734 y~~Al~ 739 (1157)
T PRK11447 734 YKDAMV 739 (1157)
T ss_pred HHHHHh
Confidence 988854
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.9e-22 Score=248.05 Aligned_cols=613 Identities=11% Similarity=0.032 Sum_probs=442.6
Q ss_pred cChhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccH----------------
Q 003148 43 KTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMY---------------- 106 (844)
Q Consensus 43 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~---------------- 106 (844)
.+...+++....++..- +.|+.++..+...+.+.|+ .+.|.+.++++.+.. +.+...+
T Consensus 42 ~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~---~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 42 HREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGD---SDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred CChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhH
Confidence 34566666666665432 2367778888899999999 999999999877433 2332222
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 003148 107 NSLIRGYSCIGLGVEAISLYVELAGFGILPDKF-TFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGE 185 (844)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 185 (844)
-.+...+.+.|++++|+..|+.+.... +|+.. ............++.++|...++.+++.. +.+...+..|...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 223446888999999999999998753 33322 11111222234689999999999999886 5677888999999999
Q ss_pred cCChHHHHHHHhhcCCCCc------ccHH-----------------HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 003148 186 CGDIVDGRRVFDEMSERNV------VSWT-----------------SLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM 242 (844)
Q Consensus 186 ~g~~~~A~~~f~~m~~~~~------~~~~-----------------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 242 (844)
.|+.++|...|+++..... ..|- ..+..+-......+|...+.++......|+...
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~- 272 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA- 272 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-
Confidence 9999999999998754211 1121 111111112223445555555544322333221
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc---eehHHH------
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNL---VLCNTI------ 311 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~---~~~~~l------ 311 (844)
...-.++...|++++|...++..++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 122345667899999999999999875 34678899999999999999999999998765 221 123322
Q ss_pred ------HHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 003148 312 ------MSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMY 385 (844)
Q Consensus 312 ------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 385 (844)
...+.+.|++++|++.|++..+... .+...+..+-..+...|+.+.|.+.+..+++... .+...+..+...|
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3456789999999999999998632 2344566677888899999999999999987643 2345566677777
Q ss_pred HHcCCHHHHHHHHhhcCCCC------------cchHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ccccccccccccccc
Q 003148 386 MKCGKQEMACRIFDHMSNKT------------VVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQE 450 (844)
Q Consensus 386 ~~~g~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~ 450 (844)
. .++.++|...++.+.... ...+..+...+...|++++|.+.|++..+. +...+..+...|.+.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5 467899999998876421 123555678889999999999999988653 445677788899999
Q ss_pred CChHHHHHHHHHHHhCCcccCh-hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCch---------hHHhHHhhhHHhc
Q 003148 451 NMFEEAMELFRVMLSERIKVDR-VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDM---------QLATALVDMFARC 520 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---------~~~~~li~~y~k~ 520 (844)
|++++|...|+++.+. .|+. ..+..+...+...++.++|...+..+......++. .....+.+.+...
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999998864 3433 22323333456678889998888765433222221 1223456778899
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 521 GDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
|+.++|.++++.- ..+...+..+...+.+.|+.++|++.|++.++ ..|+. ..+..+...+...|+.++|.+.++..
T Consensus 587 G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 587 GKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999843 34566778889999999999999999999999 67775 67889999999999999999999988
Q ss_pred HhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 003148 600 TDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-------NDVIWGSLLAACQKHQNVDIAAYAAERITE- 669 (844)
Q Consensus 600 ~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 669 (844)
.+ ..|+ ...+..+..++.+.|++++|.++++++ ...| +..++..+...+...|+.++|+..+++++.
T Consensus 664 l~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 664 PA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred hc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 76 4555 556777888999999999999999987 3222 224666677888999999999999999985
Q ss_pred --cCCCCCc
Q 003148 670 --LDPEKSG 676 (844)
Q Consensus 670 --~~p~~~~ 676 (844)
+.|..+.
T Consensus 741 ~~~~~~~p~ 749 (1157)
T PRK11447 741 SGITPTRPQ 749 (1157)
T ss_pred cCCCCCCCC
Confidence 4454444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.3e-21 Score=229.13 Aligned_cols=592 Identities=11% Similarity=0.015 Sum_probs=408.5
Q ss_pred hcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChH
Q 003148 76 QMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFG 155 (844)
Q Consensus 76 ~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 155 (844)
..|+ .+.|...|+.++ +..+.+...+..|...|.+.|++++|+..+++..+. .|+...|..++... ++..
T Consensus 56 ~~Gd---~~~A~~~l~~Al--~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 56 KNND---EATAIREFEYIH--QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEV 125 (987)
T ss_pred hCCC---HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccCh
Confidence 3488 999999999887 556667888999999999999999999999999875 45555555555333 8889
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHH--------HHhcCChHHHHHHHhhcCCCC--cccHHH-HHHHHHhCCCchHHH
Q 003148 156 EGVQVHGAIVKMGFDRDVFVENCLINF--------YGECGDIVDGRRVFDEMSERN--VVSWTS-LICACARRDLPKEAV 224 (844)
Q Consensus 156 ~a~~~~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~ 224 (844)
.|..+++++++.. +.+..++..+... |.+.+...++++ .....|+ ...... +...|.+.|++++|+
T Consensus 126 kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 126 KSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999986 5566677767666 888777677776 3333343 433344 488999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHh-cCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003148 225 YLFFEMVEEGIKPNSVTMVCVISACAK-LQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR 303 (844)
Q Consensus 225 ~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 303 (844)
+++.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..|..+..++++.|.+.|+.++|.+++++++.-
T Consensus 203 ~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999986433 3335555556666 356 666666442 34468889999999999999999999999998641
Q ss_pred -----CceehH------------------------------HHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003148 304 -----NLVLCN------------------------------TIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVS 348 (844)
Q Consensus 304 -----~~~~~~------------------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 348 (844)
+..+|- .++..+.+.++++-+.++. .+.|..... .+.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r 348 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EER 348 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHH
Confidence 111111 1234455556665444331 134444432 222
Q ss_pred HHh--hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C----CcchHHHHHHHHHhcC
Q 003148 349 ASA--QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K----TVVSWNSLIAGLIKNG 420 (844)
Q Consensus 349 ~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~~g 420 (844)
... ..+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 222 2345556666666655541 11333333444456778999999999988765 1 2234456777777776
Q ss_pred C---HHHHHHHHh-------------------------hCCC---C--CccccccccccccccCChHHHHHHHHHHHhCC
Q 003148 421 D---VESAREVFS-------------------------EMPG---R--DHISWNTMLGGLTQENMFEEAMELFRVMLSER 467 (844)
Q Consensus 421 ~---~~~A~~~~~-------------------------~m~~---~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 467 (844)
. ..++..+-. .... . +...|..+..++.. ++.++|+..|.+....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~- 505 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR- 505 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence 6 333333211 1111 1 34456666666665 7888888877777654
Q ss_pred cccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH---
Q 003148 468 IKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA--- 544 (844)
Q Consensus 468 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l--- 544 (844)
.|+......+..++...|++++|...+..+... +|+...+..+...+.+.|++++|...|+...+.+...++..
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~L 582 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWL 582 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 366544334444456788888888888876544 23333445666777888888888888887764433333322
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG 623 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 623 (844)
.......|++++|+..|++.++ ..|+...+..+..++.+.|+.++|...+++..+ ..|+ ...+..+...+...|
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 2233345888888888888888 677777788888888888888888888888877 5566 567777888888888
Q ss_pred ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 624 LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 624 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..+....+++.....+++.+.+-+++.
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 5556 45678888888888888888888888888888888888888888888888888888877666
Q ss_pred HhCC
Q 003148 702 KEQG 705 (844)
Q Consensus 702 ~~~~ 705 (844)
-...
T Consensus 738 ~~~~ 741 (987)
T PRK09782 738 WTFS 741 (987)
T ss_pred hhcC
Confidence 5443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.9e-21 Score=223.15 Aligned_cols=574 Identities=11% Similarity=0.013 Sum_probs=399.0
Q ss_pred cHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 105 MYNSLIRGY--SCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 105 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
++..+..++ ...|++++|+..|++..+.... +..++..+.+.+...|+.++|+...++.++.. +.|...+..| ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH
Confidence 444455543 3459999999999999885422 35678888999999999999999999999875 3455555554 22
Q ss_pred HHhcCChHHHHHHHhhcCC--CC-cccHHHHHHH--------HHhCCCchHHHHHHHHHHHcCCCCCcchHHHH-HHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSE--RN-VVSWTSLICA--------CARRDLPKEAVYLFFEMVEEGIKPNSVTMVCV-ISACA 250 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~ 250 (844)
+ ++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+....... ...+.
T Consensus 121 i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred h---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 2 899999999999874 43 3334333333 6665 55555555 3333344455555555 88999
Q ss_pred hcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHH
Q 003148 251 KLQNLELGDRVCAYIDELGMKANALMVNALVDMYMK-CGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILD 329 (844)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 329 (844)
..++++.+..++..+.+.+.. +......|...|.. .++ +.|..+++...+.+...+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999743 45556677778888 477 999999876555688899999999999999999999999
Q ss_pred HHHhcCCC-CChhhHHHHHHHHhhcCChhh-HHHHHHHHHHhCCCch-hhHHHHHHHHHHHcCCHHHHHHHHhhcCC---
Q 003148 330 EMLLHGPR-PDRVTMLSAVSASAQLGDLLC-GRMCHGYVLRNGLEGW-DSICNTMIDMYMKCGKQEMACRIFDHMSN--- 403 (844)
Q Consensus 330 ~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--- 403 (844)
++...-.. |+..++.-++. +.+.... +..-+ .+ .+.++ ....-.+++.+.+.+.++.+.++...-+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLS---KYSANPVQALANY---TV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred hCcccccCCCccHHHHHHHH---hccCchhhhccch---hh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 98765433 66666554443 3332210 00000 00 00011 11223346666666666666655332111
Q ss_pred --------------------------C---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCC--Cc----ccccccccccc
Q 003148 404 --------------------------K---TVVSWNSLIAGLIKNGDVESAREVFSEMPGR--DH----ISWNTMLGGLT 448 (844)
Q Consensus 404 --------------------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~~~~~li~~~~ 448 (844)
. +....--+.-...+.|+.++|..+|+..... +. ..-+-++..|.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 0 1111222223356788999999999877652 21 12224455555
Q ss_pred ccCC---hHHHHHH----------------------HHHHHh-CCcccC---hhhHHhHHHHccccCchHHHHHHHHHHH
Q 003148 449 QENM---FEEAMEL----------------------FRVMLS-ERIKVD---RVTMVGVASACGYLGALDLAKWIYAYIE 499 (844)
Q Consensus 449 ~~g~---~~~A~~l----------------------~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 499 (844)
..+. ..+++.+ +..... .+..|+ ...+..+..++. .+..++|...+....
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHH
Confidence 5554 3333333 111111 122233 333333333333 378888888777766
Q ss_pred HhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HH
Q 003148 500 KNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VF 576 (844)
Q Consensus 500 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 576 (844)
... |+......+...+...|++++|...|+++. .++...|..+...+.+.|+.++|...|++.++ ..|+.. .+
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~--l~P~~~~l~ 579 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ--RGLGDNALY 579 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCccHHHH
Confidence 554 443333344555568999999999999776 34556677888889999999999999999998 456653 33
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhc
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKH 654 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 654 (844)
..+.......|++++|...+++..+ +.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444556677999999999999988 6788888999999999999999999999998 67775 55778888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999987653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.8e-21 Score=195.65 Aligned_cols=449 Identities=14% Similarity=0.120 Sum_probs=301.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 003148 207 WTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMK 286 (844)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 286 (844)
-..|..-..+.|++++|++.-...-+++. .+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 34455566778888888886554433321 111122222223334444444333222222221 2345678888888989
Q ss_pred cCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HhhcCChhhHHHH
Q 003148 287 CGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSA-SAQLGDLLCGRMC 362 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~i 362 (844)
.|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+.- ....|.+.+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999887652 5678888889999999999999998888763 5555443222221 1223444555444
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccc
Q 003148 363 HGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRD---HIS 439 (844)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~ 439 (844)
+...++... .-. +.|+.|...+..+|+...|..-|++...-| ...
T Consensus 207 YlkAi~~qp-~fA-------------------------------iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 207 YLKAIETQP-CFA-------------------------------IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred HHHHHhhCC-cee-------------------------------eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 444433211 112 344444444444444444444444443322 224
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccCh-hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDR-VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA 518 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (844)
|-.|...|...+.+++|+..|.+... .+|+. +.+..+...|-..|.++.|...+++.+.... .-+..|+.|..++-
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALK 331 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHH
Confidence 44455555555555555555555443 23432 3444444445555555555555555554331 12456777777777
Q ss_pred hcCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME--K-RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 594 (844)
..|++.+|...+.... . .-..+.+.|...|...|..++|..+|....+ +.|.- ..++.|...|-+.|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 7888888888887766 2 3456788899999999999999999999998 88987 679999999999999999999
Q ss_pred HHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 595 LFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 595 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.+++..+ ++|. ...|+.|...|-..|+.+.|...+.++ .+.|. ....+.|...+.-.|++.+|+..++.+++++
T Consensus 410 ~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 410 CYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999987 8998 789999999999999999999999988 77775 4578899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHH
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
|+.+.+|..|+..+.-.-+|.+-.+.++
T Consensus 487 PDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred CCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9999999999888777777877433333
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-18 Score=180.53 Aligned_cols=415 Identities=14% Similarity=0.154 Sum_probs=301.1
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHH
Q 003148 248 ACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREA 324 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A 324 (844)
-..+.|++.+|++--..+-..+ +.+....-.+-..|.+..+++....--....+. ...+|..+...+-..|++++|
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHH
Confidence 3445566666665433332221 222222223334455555555443332222222 234677777777777777777
Q ss_pred HHHHHHHHhcCCCCC-hhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 325 LAILDEMLLHGPRPD-RVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 325 ~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
+.+++.|++. +|+ ...|..+..++...|+.+.|.+.+...++.. |+..-
T Consensus 136 l~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~c-------------------------- 185 (966)
T KOG4626|consen 136 LALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYC-------------------------- 185 (966)
T ss_pred HHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhh--------------------------
Confidence 7777777764 333 2345555555555555555555555444331 11111
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccccccccccccccCChHHHHHHHHHHHhCCcccCh-hhHHhHH
Q 003148 404 KTVVSWNSLIAGLIKNGDVESAREVFSEMPG--R-DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR-VTMVGVA 479 (844)
Q Consensus 404 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 479 (844)
..+.+.......|++++|...+.+..+ + -.+.|+.|...+..+|+...|++.|++... +.|+. -.|..+-
T Consensus 186 ----a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLG 259 (966)
T KOG4626|consen 186 ----ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLG 259 (966)
T ss_pred ----hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHH
Confidence 111122333334555555555444333 2 367899999999999999999999999876 45653 3566666
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHH
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK--RD-VSAWTAAIGAMAMEGNGEQ 556 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 556 (844)
..+...+.++.|...+..+.... +....++..|.-.|-..|.+|-|+..+++..+ |+ ...|+.|..++...|+..+
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 77777777777777776665543 23456677788889999999999999998873 33 5799999999999999999
Q ss_pred HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 557 AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 557 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
|...|.+.+. +.|+. ...+.|..++...|.+++|..+|....+ +.|+ ....+.|...|-..|++++|+.-+++
T Consensus 339 a~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 339 AVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 9999999999 88988 6899999999999999999999999887 7788 67889999999999999999999998
Q ss_pred C-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
. .++|+. ..++.+.+.|...|++..|.+.+.+++.++|.-+.++..|+.+|-..|+..+|..-++...+..
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8 888974 4899999999999999999999999999999999999999999999999999999998887643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=5.3e-17 Score=187.77 Aligned_cols=417 Identities=14% Similarity=0.062 Sum_probs=274.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHc
Q 003148 242 MVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRL 318 (844)
Q Consensus 242 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~ 318 (844)
+...-..+.+.|+++.|...+...++. .|+...|..+..+|.+.|++++|++.++...+. +...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 444555566677777777777776654 355666667777777777777777777665442 334566666677777
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHH
Q 003148 319 GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIF 398 (844)
Q Consensus 319 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (844)
|++++|+.-|......+.. +..... .++.-+.+......+...+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~-----------------------------------~~~~~~l~~~a~~~~~~~l 251 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSA-----------------------------------QAVERLLKKFAESKAKEIL 251 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHH-----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 7777777666554432111 100000 0011011101112223333
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccc------cccCChHHHHHHHHHHHhCC-cccC
Q 003148 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGL------TQENMFEEAMELFRVMLSER-IKVD 471 (844)
Q Consensus 399 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~------~~~g~~~~A~~l~~~m~~~g-~~p~ 471 (844)
+.-+ ++..++..+.. |......+.+..-+....+.+...-...+..+ ...+++++|++.|++....+ ..|+
T Consensus 252 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~ 329 (615)
T TIGR00990 252 ETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK 329 (615)
T ss_pred hcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh
Confidence 2211 22223332222 21111111111111111111111111111100 12367899999999988764 3443
Q ss_pred -hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 472 -RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 472 -~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
...+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|+... ..+...|..+...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555566677899999999999888764 2345577788888999999999999999776 3467889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 625 (844)
+...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|++..+ ..|+ ...|..+..+|...|++
T Consensus 409 ~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999999 67876 5677788889999999999999999987 3455 67888999999999999
Q ss_pred HHHHHHHHhC-CCCCCh-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 003148 626 GEALDLIKSM-PVEPND-VI-------WGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~-~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
++|++.|++. .+.|+. .+ ++..+..+...|++++|+..++++++++|++...+..++.+|.+.|++++|.+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999986 444431 11 12222233446999999999999999999998899999999999999999999
Q ss_pred HHHHHHhC
Q 003148 697 VRLQMKEQ 704 (844)
Q Consensus 697 ~~~~m~~~ 704 (844)
.+++..+.
T Consensus 564 ~~e~A~~l 571 (615)
T TIGR00990 564 LFERAAEL 571 (615)
T ss_pred HHHHHHHH
Confidence 99988764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=1e-17 Score=183.92 Aligned_cols=298 Identities=13% Similarity=0.111 Sum_probs=171.2
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCc---chhHHHHHHHHHHhcCCHH
Q 003148 215 ARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKA---NALMVNALVDMYMKCGAVD 291 (844)
Q Consensus 215 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~ 291 (844)
...|++++|+..|.++.+.+. .+..++..+...+...|+++.|..+++.+++.+..+ ...++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344555555555555554321 122234444444455555555555555554432111 1245677888888888888
Q ss_pred HHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 003148 292 TAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLR 368 (844)
Q Consensus 292 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 368 (844)
+|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+....
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------------- 178 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------------
Confidence 88888888865 3556788888888888999999988888877543322110
Q ss_pred hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccccccccccc
Q 003148 369 NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLT 448 (844)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 448 (844)
....+..+...|.+.|++++|...|+++.+.+. .+...+..+...|.
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------------------------~~~~~~~~la~~~~ 225 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAADP----------------------------QCVRASILLGDLAL 225 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc----------------------------CCHHHHHHHHHHHH
Confidence 011234566677778888888888877654110 12233444555555
Q ss_pred ccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQ 528 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 528 (844)
+.|++++|+++|+++...+......++..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHH
Confidence 666666666666666543211112234444445555555555555555544432 333344556666666666666666
Q ss_pred HHHhcC--CCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChh
Q 003148 529 VFRRME--KRDVSAWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 529 ~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
+|+++. .|+...++.++..+.. +|+.++++.++++|.+.+++|+..
T Consensus 304 ~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666554 3555666666655543 446666666666666666555554
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=6.3e-18 Score=185.54 Aligned_cols=291 Identities=14% Similarity=0.154 Sum_probs=199.9
Q ss_pred HHHHHcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHH
Q 003148 383 DMYMKCGKQEMACRIFDHMSNK---TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 383 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 459 (844)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------------------------- 95 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL--------------------------- 95 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------------------
Confidence 3455667777777777777642 2234455555555555555555555444
Q ss_pred HHHHHhCCcccC---hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC
Q 003148 460 FRVMLSERIKVD---RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR 536 (844)
Q Consensus 460 ~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 536 (844)
...+..++ ...+..+...+...|+++.|..++..+.+.. +.+...++.++.+|.+.|++++|.+.|+.+.+.
T Consensus 96 ----l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 96 ----LSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred ----hcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 33211111 1223334444444555555555555544432 234556667777777777777777777776532
Q ss_pred C--------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 537 D--------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 537 ~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
+ ...|..+...+.+.|+.++|+..|+++.+ ..|+. ..+..+...+.+.|++++|.++++++.+ ..|
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p 245 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDP 245 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCh
Confidence 1 12355677778888999999999999887 45654 5677777888889999999999999886 234
Q ss_pred C--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 608 Q--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 608 ~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+.++|...++++++..|++.. +..+...
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~ 324 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDY 324 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHH
Confidence 4 456778889999999999999999987 56677777788888899999999999999999999998764 4444444
Q ss_pred HHH---cCCchHHHHHHHHHHhCCCccCCc
Q 003148 685 YAS---AGKWTNVARVRLQMKEQGIRKLPG 711 (844)
Q Consensus 685 ~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 711 (844)
+.. .|+.+++..+++.|.+++++++|.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 432 568999999999999988888887
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.2e-15 Score=165.09 Aligned_cols=584 Identities=14% Similarity=0.085 Sum_probs=321.8
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCC--chHHHHHHHHHHhCCCCCCcccHHHHHHHHh--cCCChHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGL--GVEAISLYVELAGFGILPDKFTFPFVLNACT--KSSAFGEGV 158 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~ 158 (844)
...|..+|+.+-+-.|-.+........ .|...|. .+.|...|....+.. |+ .....+.+||. ..+++..+.
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~s--p~-Nil~LlGkA~i~ynkkdY~~al 184 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQS--PD-NILALLGKARIAYNKKDYRGAL 184 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhC--Cc-chHHHHHHHHHHhccccHHHHH
Confidence 456777787443223322222222221 2333343 488999998887753 22 23455677776 456899999
Q ss_pred HHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHH------hCCCchHHHHHHHHH
Q 003148 159 QVHGAIVKMG--FDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACA------RRDLPKEAVYLFFEM 230 (844)
Q Consensus 159 ~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m 230 (844)
.+|..++... ..+|+.+.. -..+.++|+.+.|+..|....+-|+..-++++.-.. ....+..++.++...
T Consensus 185 ~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 185 KYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 9999977653 556766543 356779999999999999988766655555543221 122344555555554
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-
Q 003148 231 VEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKA--NALMVNALVDMYMKCGAVDTAKQLFGECKDR---N- 304 (844)
Q Consensus 231 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~- 304 (844)
-... .-|++..+.|.+.+...|++..+..+...+....... -...|--+..+|-..|+++.|...|.+..+. +
T Consensus 263 y~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~ 341 (1018)
T KOG2002|consen 263 YKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF 341 (1018)
T ss_pred Hhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence 4332 2366677778888888889998888888887764221 1234666788888888999998888776542 2
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHhhcC----ChhhHHHHHHHHHHhCCCchhhHHH
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR-VTMLSAVSASAQLG----DLLCGRMCHGYVLRNGLEGWDSICN 379 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~ 379 (844)
+..+--+...|...|+.+++...|...... .||. .|...+-..|+..+ ..+.|..+.+...+.- ..|...|-
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 344556777888888888888888888775 3444 44444444444443 2344444444444432 33555566
Q ss_pred HHHHHHHHcCCH------HHHHHHHhhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC-------Ccc------c
Q 003148 380 TMIDMYMKCGKQ------EMACRIFDHMS-NKTVVSWNSLIAGLIKNGDVESAREVFSEMPGR-------DHI------S 439 (844)
Q Consensus 380 ~Li~~y~~~g~~------~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~------~ 439 (844)
.+..+|....-. ..|..++..-. ...+...|.+...+...|++++|...|.+.... |.. +
T Consensus 419 ~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 666666554332 22332222221 234456666666677777777777666655432 110 0
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHc-cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASAC-GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA 518 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (844)
-..+...+-..++++.|.+.|...... .|..++-..=+.+. -..+.+.++...+..+.... ..++.+++-+.+.|.
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHH
Confidence 111223334445555666666555543 34333211111111 12234444544444444322 234444444555555
Q ss_pred hcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME-----KRDVSAWTAAIGAMAM------------EGNGEQAVELFNEMLRQGIKPDS-IVFVGVL 580 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 580 (844)
+...+.-|.+-|..+. .+|..+.-+|...|.+ .+..++|+++|.+.++ ..|-. ..-+.+.
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIG 653 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchh
Confidence 5555555555444333 1233343344443322 1234555555555555 34432 4445555
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----CCCCChHHHHHHHHHHHhcCC
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPNDVIWGSLLAACQKHQN 656 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~ 656 (844)
-.++..|++.+|+.+|.+..+.. .....+|-.+.+.|..+|++-.|++.|+.. .-+.+..+.+-|..++...|.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 55556666666666666665521 122344555566666666666666666544 112244455555556666666
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
+.+|.+.+..++.+.|.++..-..++-+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 6666666666666666665544444433
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4e-15 Score=163.13 Aligned_cols=592 Identities=14% Similarity=0.086 Sum_probs=404.6
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHH--HcCCCchHHHHHHHHHHhC--CCCCCcccHHHHHHHHhcCCChHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGY--SCIGLGVEAISLYVELAGF--GILPDKFTFPFVLNACTKSSAFGEGV 158 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~ 158 (844)
+++|.+.|...++. .++|+.. .+..++ ...+++..|+.+|...... ..+||... .+-.++.+.++.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 57888888877632 3345432 233343 4568999999999996653 34555543 2335567889999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhcC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003148 159 QVHGAIVKMGFDRDVFVENCLINFYGECG---DIVDGRRVFDEMS---ERNVVSWTSLICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (844)
..|.++.+.. +.++.++-.|--+-.... .+..+..++...- ..|++..+.|-.-|.-.|+++.++.+...+..
T Consensus 220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999998765 223333333322222222 3344555554332 35888999999999999999999999999877
Q ss_pred cCCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ccee
Q 003148 233 EGIK--PNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVL 307 (844)
Q Consensus 233 ~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~ 307 (844)
.... .-...|-.+-+++-..|+++.|.+.+-...+..-..-+..+-.|..+|.+.|+++.|...|+.+... +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 5311 1233477788888899999999999988877643322455667899999999999999999998653 4456
Q ss_pred hHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHH----HHHhCCCchhhHHH
Q 003148 308 CNTIMSNYVRLG----LAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGY----VLRNGLEGWDSICN 379 (844)
Q Consensus 308 ~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~ 379 (844)
...+...|...+ ..+.|..++.+..+.- ..|...|..+-..+ ..++.......+.. +...+-.+.+.+.|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666666676665 4566666666665542 22444554444443 33444444544443 34556668888999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC-------CCc------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccccccccc
Q 003148 380 TMIDMYMKCGKQEMACRIFDHMSN-------KTV------VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGG 446 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 446 (844)
.+...+...|+++.|...|+.... +|. .+--.+...+-..++.+.|.+.+..+....+ ..|.+
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp----~YId~ 532 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP----GYIDA 532 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc----hhHHH
Confidence 999999999999999999987653 222 1222344555666789999999988876432 23444
Q ss_pred cccc-------CChHHHHHHHHHHHhC-CcccChhhHHhHHHHccccCchHHHHHHHHHHHHhC-CCCchhHHhHHhhhH
Q 003148 447 LTQE-------NMFEEAMELFRVMLSE-RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNG-IHCDMQLATALVDMF 517 (844)
Q Consensus 447 ~~~~-------g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y 517 (844)
|.+. +...+|..++.+.... .-.|+..+| +-..+.....+..|..-+..+.+.- ..+|++..-+|.+.|
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 4444 5677888888887663 345555444 2223444455666666555554432 235777777777765
Q ss_pred Hh------------cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003148 518 AR------------CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA 582 (844)
Q Consensus 518 ~k------------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 582 (844)
.. .+..+.|.++|..+. .+|...-|-+...++..|++.+|..+|.+..+... -+..+|..+...
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC 689 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH
Confidence 42 345788999999877 34666777788899999999999999999999643 345678899999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHH--HHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVI--WGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~--~~~ll~~~~~~g~~~~ 659 (844)
|...|++-.|+++|+...+++.-.-+.....+|..++.++|++.+|.+..... ...|...+ +|.. ..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a----------~v 759 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA----------LV 759 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH----------HH
Confidence 99999999999999999887876777889999999999999999999988776 45553332 2211 12
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
..+..+.+++..+. .+=.+....+..++|.++|..|.+.+-
T Consensus 760 ~kkla~s~lr~~k~------t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 760 LKKLAESILRLEKR------TLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23344455555551 223345566788999999999987653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.7e-15 Score=178.53 Aligned_cols=185 Identities=9% Similarity=0.052 Sum_probs=134.7
Q ss_pred HhcCCHHHHHHHHHhcCCCC--Hh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCc
Q 003148 518 ARCGDPQRAMQVFRRMEKRD--VS--AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-----IVFVGVLTACSHGGL 588 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~ 588 (844)
...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|+++.+. .|.. .....+..++...|+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhccc
Confidence 34577777777777766331 11 1111455677778888888888877663 3322 334555556777888
Q ss_pred HHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 589 VNQGWHLFRSMTDIHG----------VSPQ---IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
+++|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++ ...| +...|..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 8888888887766211 0122 123456778888999999999999987 4455 46688888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|+.++|+..++++++++|+++..+..++.++...|+|++|.++++.+.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888764
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=5.4e-16 Score=178.66 Aligned_cols=353 Identities=13% Similarity=0.020 Sum_probs=223.5
Q ss_pred hcCCHHHHHHHHHhcCCC------CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhH
Q 003148 286 KCGAVDTAKQLFGECKDR------NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG 359 (844)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 359 (844)
|..+++.-.-+|..-+++ +..-...++..+.+.|++++|+.++...+.....+... +..++.+....|+.+.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCHHHH
Confidence 344444444445444431 22234445666777788888888877777654333222 22222333345555555
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 003148 360 RMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS 439 (844)
Q Consensus 360 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 439 (844)
...+..+++... .+...+..+...|.+.|++++|...|++...-+ ..+...
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNSQI 146 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHH
Confidence 555555544321 123344455555556666666666555554310 013334
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 519 (844)
|..+...+...|++++|...++++... .|+.......+..+...|++++|...+..+.+....++......+...+.+
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555556666666666666655443 222222111122345556666666666665554333333344445667778
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQ----AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 591 (844)
.|++++|...|+... ..+...+..+...|.+.|++++ |+..|++.++ ..|+. ..+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888888766 3356778888888888898885 7899999988 67776 577888888999999999
Q ss_pred HHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGS-LLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
|..++++..+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|...+++++
T Consensus 303 A~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999887 4565 456677888999999999999999887 45676544443 4567888999999999999999
Q ss_pred hcCCCCC
Q 003148 669 ELDPEKS 675 (844)
Q Consensus 669 ~~~p~~~ 675 (844)
+.+|++.
T Consensus 380 ~~~P~~~ 386 (656)
T PRK15174 380 QARASHL 386 (656)
T ss_pred HhChhhc
Confidence 9999864
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=2.7e-15 Score=173.64 Aligned_cols=250 Identities=14% Similarity=0.061 Sum_probs=181.1
Q ss_pred cccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhh
Q 003148 438 ISWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM 516 (844)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (844)
..|+.+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34555555566666666666666666543 343 2345555555666677777777777666553 3356777888889
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 592 (844)
|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHH
Confidence 999999999999998876 33567788888999999999999999999988 56765 6788888899999999999
Q ss_pred HHHHHHhHhhcCCCCCc-ch-------HHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQI-VH-------YGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~-~~-------~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~ 662 (844)
+..|++..+ +.|+. .. ++.....+...|++++|.+++++. ...|+. ..|..+...+...|++++|..
T Consensus 487 ~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 487 IEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999887 44431 11 112223344579999999999986 666754 478889999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 663 AAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 663 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+++++++.+..... .....|.+|.++....++
T Consensus 564 ~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 564 LFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 999999988764331 123345566666555444
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.4e-15 Score=175.27 Aligned_cols=312 Identities=9% Similarity=0.011 Sum_probs=238.4
Q ss_pred HHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAME 458 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 458 (844)
..+.|+.++|..+++.... .+...+..++.+....|++++|...|+++.. .+...|..+...+.+.|++++|+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555544432 1233344444444555555555555555543 245567777888889999999999
Q ss_pred HHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC-
Q 003148 459 LFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR- 536 (844)
Q Consensus 459 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~- 536 (844)
.|+++... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+. .+.+.|++++|...++.+.+.
T Consensus 132 ~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 132 LAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence 99998764 554 456667778889999999999999988776544333 333333 478899999999999987643
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHH----HHHHHHHhHhhcCCCCC
Q 003148 537 ---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQ----GWHLFRSMTDIHGVSPQ 608 (844)
Q Consensus 537 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~ 608 (844)
+...+..+...+...|++++|+..|+++.+ ..|+. ..+..+..++...|++++ |...|+++.+ +.|+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~ 282 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSD 282 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCC
Confidence 233445566788899999999999999998 56765 567788889999999986 8999999987 5566
Q ss_pred -cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 609 -IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 609 -~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
...+..+..+|.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++.+|+++..+..++.++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 678889999999999999999999988 55665 557788888999999999999999999999999887777789999
Q ss_pred HHcCCchHHHHHHHHHHhCC
Q 003148 686 ASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 686 ~~~g~~~~a~~~~~~m~~~~ 705 (844)
...|++++|.+.++...+..
T Consensus 363 ~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=4.8e-13 Score=154.44 Aligned_cols=431 Identities=11% Similarity=0.079 Sum_probs=203.5
Q ss_pred HhcCChHHHHHHHhhcCCCCcc---cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHH---HHHHHhcCCchH
Q 003148 184 GECGDIVDGRRVFDEMSERNVV---SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCV---ISACAKLQNLEL 257 (844)
Q Consensus 184 ~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~a~~~~~~~~~ 257 (844)
.+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555544432111 12244444444455555555555444 2222211111 223334455555
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHH--cCChHHHHHHHHHHHhcC
Q 003148 258 GDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVR--LGLAREALAILDEMLLHG 335 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g 335 (844)
|.++++.+.+.. +.+..++..|+..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~- 198 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL- 198 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence 555555555443 22355556777788888888888888888876544333334444444 45555588888888876
Q ss_pred CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC-CCcchHHHHHH
Q 003148 336 PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN-KTVVSWNSLIA 414 (844)
Q Consensus 336 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~ 414 (844)
.|+...+ +..++....+.|-...|.++...-++ -+...+.-+
T Consensus 199 -~P~n~e~----------------------------------~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-- 241 (822)
T PRK14574 199 -APTSEEV----------------------------------LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-- 241 (822)
T ss_pred -CCCCHHH----------------------------------HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--
Confidence 3443222 23333444444444444444444332 000000000
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCccccccccccccccCCh---HHHHHHHHHHHhC-CcccCh-hhH----HhHHHHcccc
Q 003148 415 GLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF---EEAMELFRVMLSE-RIKVDR-VTM----VGVASACGYL 485 (844)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~p~~-~t~----~~ll~a~~~~ 485 (844)
+.+.|.+..+....+ .-...+++ +.|+.-++.+... +-.|.. .-+ .--+-++...
T Consensus 242 ------~~~~~a~~vr~a~~~----------~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 242 ------ERDAAAEQVRMAVLP----------TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred ------HHHHHHHHHhhcccc----------cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 000111111000000 00011222 4444444444431 111221 111 1122233334
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEML 565 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 565 (844)
++..++...++.+...+.+....+--+ ..++|...+++++|+.+|+++.
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a-------------------------------~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRW-------------------------------AASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHh
Confidence 444444444444444443323333344 4455555555555555555554
Q ss_pred HCCC----CCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcC------------CCCC-cchHHHHHHHHHhcCChHH
Q 003148 566 RQGI----KPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHG------------VSPQ-IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 566 ~~g~----~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g~~~e 627 (844)
.... .|+. .....|.-++..++++++|..+++.+.+... -.|| ...+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 3210 1111 2234455555555555555555555544100 0111 2233345555666677777
Q ss_pred HHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 628 ALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 628 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++.++++ ...| |...+..+...+...|+..+|+..++.+..++|++......++.++...|+|++|.++.+...+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77776666 3334 45566666666666777777777776666667776666666666666777777776666655543
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=1.4e-13 Score=162.41 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=62.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHh
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQK 653 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~ 653 (844)
..+...+...|+.++|++.++++.. ..|+ ...+..+..++...|+.++|++.+++. ...|| ...+..+......
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 3444556666666777766666655 2333 455666666777777777777777766 45564 3455555556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCch
Q 003148 654 HQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
.|++++|+..++++++..|+++.+
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777777777777777777543
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.2e-13 Score=138.01 Aligned_cols=339 Identities=14% Similarity=0.125 Sum_probs=222.4
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh--cCCChH-HHHHHHHHHHHhCCCCChhHHHH
Q 003148 102 TLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACT--KSSAFG-EGVQVHGAIVKMGFDRDVFVENC 178 (844)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~ 178 (844)
.+++=|.|+.. ..+|...++.-+|++|...|+..+...-..+++..+ ...++. .-.+.|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34566666654 456889999999999999998877766555554333 222222 2234444555555 3333343
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHH
Q 003148 179 LINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELG 258 (844)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 258 (844)
|.|++.+ -+|+..| +...++.+||.|+++-...+.|.+++++-.....+.+..+||.+|.+-+-. .+
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 4565554 4455444 566789999999999999999999999999998999999999999886533 34
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003148 259 DRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRP 338 (844)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 338 (844)
+++..+|+...+.||..|+|+++.+.++.|+++.|++. |++++.+|.+-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 89999999999999999999999999999999988765 455666666666666
Q ss_pred ChhhHHHHHHHHhhcCChhh-HHHHHHHHHHh----CCC----chhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchH
Q 003148 339 DRVTMLSAVSASAQLGDLLC-GRMCHGYVLRN----GLE----GWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSW 409 (844)
Q Consensus 339 ~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~----g~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~ 409 (844)
.-.+|..+|..+.+.++... +..+...+... .+. .|...+..-++.+.+..+.+-|.++-.-....+
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---- 386 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---- 386 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC----
Confidence 66666666666665555432 22222222211 111 122333333444444444444444433322100
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 410 NSLIAGLIKNGDVESAREVFSEMPG--RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
++ ..|.. ....-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.
T Consensus 387 -----------N~-------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~ 448 (625)
T KOG4422|consen 387 -----------NW-------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR 448 (625)
T ss_pred -----------ch-------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc
Confidence 00 00000 01122333444556666677778888888877788888999999999988899
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 003148 488 LDLAKWIYAYIEKNGIHCD 506 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~ 506 (844)
++...+++..++..|....
T Consensus 449 ~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred chhHHHHHHHHHHhhhhhh
Confidence 9998888888888774433
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=5.2e-11 Score=125.41 Aligned_cols=606 Identities=14% Similarity=0.101 Sum_probs=436.7
Q ss_pred CCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHH
Q 003148 79 TFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGV 158 (844)
Q Consensus 79 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 158 (844)
+..++..|+.++..+. +..+.+...|-+-.+.--..|.+..|..+..+=-+. .+-+.-.| |.++ +....+.|+
T Consensus 263 dl~DikKaR~llKSvr--etnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Leai-RLhp~d~aK 335 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVR--ETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEAI-RLHPPDVAK 335 (913)
T ss_pred cHHHHHHHHHHHHHHH--hcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHHH-hcCChHHHH
Confidence 3445788999988776 444556666766555555666666666554332221 11122222 3332 344456677
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 003148 159 QVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE--R-NVVSWTSLICACARRDLPKEAVYLFFEMVEEGI 235 (844)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (844)
.+....++.- +.++..|-.-.+. ..+...-.+++.+..+ | ++..|-.. +.-...+.|.-++.+..+.
T Consensus 336 ~vvA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAvec-- 405 (913)
T KOG0495|consen 336 TVVANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVEC-- 405 (913)
T ss_pred HHHHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHh--
Confidence 7777776653 3344444322221 1223333445544432 3 34445443 3445566677777777653
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----Ccee
Q 003148 236 KPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD----R----NLVL 307 (844)
Q Consensus 236 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~----~~~~ 307 (844)
-|. -.-|.-|+++...++.|+.++....+. ++.+..+|.+-...--..|+.+...++.++-.. . |...
T Consensus 406 cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 406 CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 222 234556777778888888888877664 456777777666666777888887777765321 1 2233
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 003148 308 CNTIMSNYVRLGLAREALAILDEMLLHGPRPD--RVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMY 385 (844)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 385 (844)
|-.=...+-..|..--+..+....+.-|+.-. ..|+...-..|.+.+.++.++.++...++. ++.+..+|...+..-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Confidence 55555566666666666667777766666433 358888889999999999999999998876 455677888888888
Q ss_pred HHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHHHHHH
Q 003148 386 MKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 386 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 459 (844)
-..|..++-..+|++... +..+.|-.....+...|++..|..++....+. +...|-+-+..-..+.++++|..+
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 889999999999998875 35567888888899999999999998877653 456788888888999999999999
Q ss_pred HHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-
Q 003148 460 FRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK--R- 536 (844)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~- 536 (844)
|.+.... .|+...|.--...--.++..++|.++++..++. ++.-...|-.+.+.|-+.++++.|.+.|..-.+ |
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 9998764 566555554444445578899999999888876 344567888889999999999999999987663 3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
.+..|-.|...--+.|..-+|..++++..- -.|+. ..|...+..=.+.|+.++|.....++.+ ..+.+...|.--
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 466898888888889999999999999987 35654 7788999999999999999999998887 355557789999
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
|.+..+.++-..+.+.+++.. .|+.+.-+....+....+++.|...|++++..+|++..+|..+-..+...|.-++-.
T Consensus 794 I~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred HHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 999999999888888888874 355666677777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCcccEEEE
Q 003148 696 RVRLQMKEQGIRKLPGSSSIEV 717 (844)
Q Consensus 696 ~~~~~m~~~~~~~~~~~s~~~~ 717 (844)
+++++..... +.-|..|+-+
T Consensus 872 ev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 872 EVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHhccC--CCCCcHHHHH
Confidence 9998877643 3345566543
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=2.8e-11 Score=132.69 Aligned_cols=614 Identities=12% Similarity=0.065 Sum_probs=353.1
Q ss_pred HHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 003148 73 TCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSS 152 (844)
Q Consensus 73 ~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 152 (844)
.+++ |+ ++.|.+++..++ ...+.+...|..|-..|-+.|+.++++..+-..-.. .+-|..-|..+-.-..+.|
T Consensus 149 lfar-g~---~eeA~~i~~EvI--kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 149 LFAR-GD---LEEAEEILMEVI--KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHh-CC---HHHHHHHHHHHH--HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcc
Confidence 3444 88 899999998777 445677888999999999999988888765444332 2334456777777778888
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCc-ccH-------HHHHHHHHhCCCchHHH
Q 003148 153 AFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNV-VSW-------TSLICACARRDLPKEAV 224 (844)
Q Consensus 153 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-~~~-------~~li~~~~~~g~~~~A~ 224 (844)
++++|.-.+.++++.. +++....---..+|-+.|+...|..-|.++-+.+. +.| -.++..|...+..+.|+
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8999999999998886 55555555566788888999888888877654222 111 22345566666667788
Q ss_pred HHHHHHHHc-CCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHh---------------------------CCCcchhH
Q 003148 225 YLFFEMVEE-GIKPNSVTMVCVISACAKLQNLELGDRVCAYIDEL---------------------------GMKANALM 276 (844)
Q Consensus 225 ~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~ 276 (844)
+.+...... +-..+..+++.++..+.+...++.+....-.+... ++.++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 877776652 22334445666666666666666665554444431 12222223
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhcCC----CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 003148 277 -VNALVDMYMKCGAVDTAKQLFGECKD----RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 277 -~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
...+--...+.+...+++.-|-.... -++..|.-+..+|.+.|++.+|+.+|..+.....--+.+.|..+-.++-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 11111122233344444433322221 1334567777888888888888888888877655555667777777777
Q ss_pred hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcc------------hHHHHHHHHHhc
Q 003148 352 QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVV------------SWNSLIAGLIKN 419 (844)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~------------~~~~li~~~~~~ 419 (844)
..+..+.|.+.+..++... +.+..+.-.|...|-+.|+.++|.+++..+..||.. ..-...+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 8888888888888877653 223444557777888888888888888887766521 112224556666
Q ss_pred CCHHHHHHHHhhCCCC--------------------------CccccccccccccccCChHHHHH------HHHHHHhCC
Q 003148 420 GDVESAREVFSEMPGR--------------------------DHISWNTMLGGLTQENMFEEAME------LFRVMLSER 467 (844)
Q Consensus 420 g~~~~A~~~~~~m~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~------l~~~m~~~g 467 (844)
|+.++=..+-..|..+ ....-...+.+-.+.++.....+ .+..-...|
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 6666533333222210 00000111111111111110000 000011112
Q ss_pred cccCh--hhHHhHHHHccccCchHHHHHHHHHHHHhCC--CCch---hHHhHHhhhHHhcCCHHHHHHHHHhcCCC----
Q 003148 468 IKVDR--VTMVGVASACGYLGALDLAKWIYAYIEKNGI--HCDM---QLATALVDMFARCGDPQRAMQVFRRMEKR---- 536 (844)
Q Consensus 468 ~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~---~~~~~li~~y~k~g~~~~A~~~~~~~~~~---- 536 (844)
+.-+. .-+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.|...
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22211 1233344555666777777776655544321 1111 22334445555667777777777766533
Q ss_pred -C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH--HHHhccCcHHHHHHHHHHhHhhcCCCCCcc
Q 003148 537 -D---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL--TACSHGGLVNQGWHLFRSMTDIHGVSPQIV 610 (844)
Q Consensus 537 -~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 610 (844)
+ ...||...+.+.++|+-.--..++..... ..|+......++ .-....+.+..|.+++-.... ..|+..
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~P 774 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSP 774 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCc
Confidence 2 24566666666665554444444444333 233331111111 123345677777777666655 557644
Q ss_pred hHH-HHHHHHH----------hcCChHHHHHHHHhC-CC-CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 611 HYG-CMVDLLG----------RAGLLGEALDLIKSM-PV-EP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 611 ~~~-~li~~~~----------~~g~~~eA~~~~~~m-~~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.++ ||.-++. |.-..-.+..++++- .. .+ -..++..+..+|..-|=+..|...++++++..|.+.
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 443 3332221 111233445555443 11 12 344666788899999999999999999999866432
Q ss_pred ------------chHHHHHHHHHHcCCchHHHHHHHH
Q 003148 676 ------------GVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 676 ------------~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
.+-..|.-+|-+.|+..-|.++.++
T Consensus 855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 1334677789999999998888754
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=4.6e-12 Score=146.39 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=152.9
Q ss_pred cccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCC-----CCchhHHhHHhhh
Q 003148 442 TMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI-----HCDMQLATALVDM 516 (844)
Q Consensus 442 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~~~~li~~ 516 (844)
-.+.++...|++.++++.|+.|...|.+....+-..+..++...+.+++|..++..+..... .++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 35567888999999999999999988765556788889999999999999999988866431 2233334556666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHH
Q 003148 517 FARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 595 (844)
|...+++++|..+++.+.+..+ |. +.-+ |... ....||-.. +..+...+...|++.+|.+.
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p--~~--~~~~---~~~~-----------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTP--YQ--VGVY---GLPG-----------KEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCC--cE--Eecc---CCCC-----------CCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666543111 10 0000 0000 012333333 34455567888999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
++.+.. ..|. ......+.+++...|+..+|++.++.+ ...|+. .+...+..+....|++.+|....+.+++..|
T Consensus 439 le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999977 4454 778888999999999999999999776 566754 4666677777888999999999999999999
Q ss_pred CCCch
Q 003148 673 EKSGV 677 (844)
Q Consensus 673 ~~~~~ 677 (844)
+++..
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 98743
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=9.6e-13 Score=131.54 Aligned_cols=248 Identities=16% Similarity=0.170 Sum_probs=184.3
Q ss_pred CCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 003148 98 ETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN 177 (844)
Q Consensus 98 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 177 (844)
..+++..+|.+||.++++-...+.|.++|++-.....+.+..+||.+|.+-+ +..++.+..+|+...+.||.+++|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHH
Confidence 3446778999999999999999999999999999888999999999998764 455689999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHh----hcC----CCCcccHHHHHHHHHhCCCchH-HHHHHHHHHHc----CCCC----Ccc
Q 003148 178 CLINFYGECGDIVDGRRVFD----EMS----ERNVVSWTSLICACARRDLPKE-AVYLFFEMVEE----GIKP----NSV 240 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~p----d~~ 240 (844)
++++..++.|+++.|++.+- +|. +|...+|..+|.-+.+.++..+ |..++.+.... .++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999999988876553 443 4788888888888888877754 44444444432 2333 445
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHH
Q 003148 241 TMVCVISACAKLQNLELGDRVCAYIDELG----MKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYV 316 (844)
Q Consensus 241 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 316 (844)
.|.+.+..|.+..+.+.|.++++.+.... +.|+. + ...-|..+....+
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-----------------------~-----~~fYyr~~~~lic 409 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-----------------------H-----RNFYYRKFFDLIC 409 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------------H-----HHHHHHHHHHHHH
Confidence 57778888888888888888887665421 11110 0 0112334555566
Q ss_pred HcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhH
Q 003148 317 RLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSI 377 (844)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 377 (844)
+....+.-+.+|..|.-.-+-|+..+...++++....+.++...+++..++..|......+
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6667777788888887777778888888888888888888888888887777765443333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=6.8e-11 Score=129.74 Aligned_cols=534 Identities=12% Similarity=0.100 Sum_probs=327.5
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCCchHHHHHHH
Q 003148 152 SAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEM---SERNVVSWTSLICACARRDLPKEAVYLFF 228 (844)
Q Consensus 152 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 228 (844)
|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 67777777777777665 455566667777777777777766654322 22345566666666667777777777777
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHH----HHHHHHhcCCHHHHHHHHHhcCC--
Q 003148 229 EMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNA----LVDMYMKCGAVDTAKQLFGECKD-- 302 (844)
Q Consensus 229 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~m~~-- 302 (844)
+.++.. +++...+--=...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 766542 12222222333445566777777766666666543223222222 33445555666777777766554
Q ss_pred C---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhh----------------------H----HHHHHHHhhc
Q 003148 303 R---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT----------------------M----LSAVSASAQL 353 (844)
Q Consensus 303 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------------~----~~ll~~~~~~ 353 (844)
. +...+|.++..|.+...++.|......+.....++|..- | .-+.-+..+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 334577888888888888888887777766222222211 1 1222233455
Q ss_pred CChhhHHHHHHHHHHhC--CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHH
Q 003148 354 GDLLCGRMCHGYVLRNG--LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN----KTVVSWNSLIAGLIKNGDVESARE 427 (844)
Q Consensus 354 ~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~ 427 (844)
...+....+.....+.. ...++..+.-+.++|...|.+.+|.++|..+.. .+...|-.+...|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 66666666666676666 455677889999999999999999999999876 366789999999999999999999
Q ss_pred HHhhCCCCCcccc---ccccccccccCChHHHHHHHHHHHh--------CCcccChhhHHhHHHHccccCchHHHHHHHH
Q 003148 428 VFSEMPGRDHISW---NTMLGGLTQENMFEEAMELFRVMLS--------ERIKVDRVTMVGVASACGYLGALDLAKWIYA 496 (844)
Q Consensus 428 ~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 496 (844)
.|+....-++... .+|-..|.+.|+.++|++.+..+.. .+..|+..........+...|+.++=..+-.
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9998876444433 3455678899999999999988642 2233444333344444555566555333322
Q ss_pred HHHHhC----------------------CCCchhHHhHHhhhHHhcCCHHHHHHHHH--------hcCCCCHhHH----H
Q 003148 497 YIEKNG----------------------IHCDMQLATALVDMFARCGDPQRAMQVFR--------RMEKRDVSAW----T 542 (844)
Q Consensus 497 ~~~~~g----------------------~~~~~~~~~~li~~y~k~g~~~~A~~~~~--------~~~~~~~~~~----~ 542 (844)
.++... ..........++.+-.+.++.....+-.. ....-...-| .
T Consensus 551 ~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~ 630 (895)
T KOG2076|consen 551 TLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFR 630 (895)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHH
Confidence 222110 01111122223333333333222211111 1111123334 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCh-h-HH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGI--KPDS-I-VF-VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGC 614 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ 614 (844)
-++..+++.++.++|+.+...+.+.-. .++. . .+ ...+.++...+++.+|..+++.|...++...+ ...|++
T Consensus 631 e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 631 ELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 457788899999999999998887542 2222 1 23 34455677899999999999999886444433 456776
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAA--CQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
....+.+.|+-.--..++... ..+|+......++.+ ....+.+.-|...+-++....|++|.+..+|+-++.+
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 667777777655555555554 333333222222222 3456677789999999999999999888888777644
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=4e-13 Score=134.77 Aligned_cols=451 Identities=16% Similarity=0.197 Sum_probs=283.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHh
Q 003148 212 CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVC-VISACAKLQNLELGDRVCAYIDELGMKAN----ALMVNALVDMYMK 286 (844)
Q Consensus 212 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~~ 286 (844)
.-|.-+....+|+..|+-.++...-||.-.... +-..+.+.+.+..|.+.+...+..-...+ ..+.+.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 445556666777777777766666665543321 11223444555666666665554422111 2233444445667
Q ss_pred cCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 003148 287 CGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHG 364 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 364 (844)
.|.+++|+.-|+...+ ||..+--.|+-++.--|+.++..+.|.+|..-...||..-|.
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------------------- 348 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------------------- 348 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc--------------------
Confidence 7778888877776543 555543334444445677777777777777655555544331
Q ss_pred HHHHhCCCchhhHHHH-----HHHHHHHcCC--HHHHH----HHHhhcCCCCcc---hHH----------H--------H
Q 003148 365 YVLRNGLEGWDSICNT-----MIDMYMKCGK--QEMAC----RIFDHMSNKTVV---SWN----------S--------L 412 (844)
Q Consensus 365 ~~~~~g~~~~~~~~~~-----Li~~y~~~g~--~~~A~----~~f~~m~~~~~~---~~~----------~--------l 412 (844)
+..-.|+....|. .+.-..+... .++++ +++.-...|+.. -|. . -
T Consensus 349 ---~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 349 ---KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred ---CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 0111122222111 1111111111 11111 122222222221 011 0 1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccccccc-----ccccc-CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccC
Q 003148 413 IAGLIKNGDVESAREVFSEMPGRDHISWNTMLG-----GLTQE-NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLG 486 (844)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~-----~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 486 (844)
..-|.++|+++.|.+++.-...+|..+-.+-.. -|.+- .++.+|.+.-+...... +-|......--......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 235789999999999988777665443222111 12222 34556655555443221 111111111112233468
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNE 563 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 563 (844)
+++.|.+.+.+.....-......||. .-.|-+.|++++|+..|-.+. ..++...-.+.+.|....+..+|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999887665444555553 334778999999999998765 55677777788889999999999999988
Q ss_pred HHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh
Q 003148 564 MLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND 641 (844)
Q Consensus 564 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~ 641 (844)
... +.|+. ..+.-|...|-+.|+-.+|.+++-.--+ -++-+.++...|..-|....-+++|+.+|++. -++|+.
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 777 77766 6677788899999999999998765433 13445788888888888899999999999998 678999
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc
Q 003148 642 VIWGSLLAAC-QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691 (844)
Q Consensus 642 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 691 (844)
.-|..++..| ++.|++..|...++..-..-|++....-.|..++...|.-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999887 6689999999999999999999998888888888888754
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=1.9e-11 Score=133.04 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=143.9
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHH--hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-HhHHHHH
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEK--NGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD-VSAWTAA 544 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-~~~~~~l 544 (844)
..|..++.-|.....++.|..+.+++.. ..+..|...+..+.+...+.+...++..++.++.+ ++ ..+.--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 3467778888888888888888877643 34556777788888999999999999998888873 21 2334445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC------------------------------CChhHHHHHHHH------------
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIK------------------------------PDSIVFVGVLTA------------ 582 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~------------------------------p~~~t~~~ll~a------------ 582 (844)
+.+-+..|+.+...++++-+...|+. |.......+.+.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~ 651 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKT 651 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHH
Confidence 66667777777777766665544432 111111111111
Q ss_pred ---------HhccCcHHHHHHHHHHhHhhcCCC---------------C---------CcchHHHHHHHHHhcCChHHHH
Q 003148 583 ---------CSHGGLVNQGWHLFRSMTDIHGVS---------------P---------QIVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 583 ---------~~~~g~~~~a~~~~~~m~~~~~~~---------------p---------~~~~~~~li~~~~~~g~~~eA~ 629 (844)
|.+.|++.++..+.+ ..|+. | +..+..-|+..|.+.|+++.|.
T Consensus 652 mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~ 727 (1088)
T KOG4318|consen 652 MDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERAS 727 (1088)
T ss_pred HhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHH
Confidence 222333333322221 11111 0 1112233667899999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 630 DLIKSMPVEPNDVIWGSLLAACQKHQ---NVDIAAYAAERITELDPEKSG---VHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 630 ~~~~~m~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.++.++++-|+..+...|...++++. ++-++....+++.++.|..+. .|.-.+-+..+...-+-|.+.+.+..+
T Consensus 728 glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~ee 807 (1088)
T KOG4318|consen 728 GLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEE 807 (1088)
T ss_pred hHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999998899988888888887754 556677777777777665433 333333434444445578888988887
Q ss_pred CC
Q 003148 704 QG 705 (844)
Q Consensus 704 ~~ 705 (844)
+.
T Consensus 808 q~ 809 (1088)
T KOG4318|consen 808 QL 809 (1088)
T ss_pred cc
Confidence 74
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1e-09 Score=115.94 Aligned_cols=485 Identities=13% Similarity=0.121 Sum_probs=320.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchH
Q 003148 146 NACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKE 222 (844)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 222 (844)
++.....+.+.|+-++.+.++.- +.+...| -+|++...++.|.+++++..+ .+...|.+-..---.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 33344455555666666666542 3333333 345556666777777766553 355667666555566777776
Q ss_pred HHHHHHH----HHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhcCCHHHHHHH
Q 003148 223 AVYLFFE----MVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKAN--ALMVNALVDMYMKCGAVDTAKQL 296 (844)
Q Consensus 223 A~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~ 296 (844)
...++.+ +...|+..+..-|..=..+|-..|..-....+...++..|++.. -.+++.-.+.+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 6666554 33457777777777777777777777777777777777666442 34666666777777777777777
Q ss_pred HHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCc
Q 003148 297 FGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEG 373 (844)
Q Consensus 297 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 373 (844)
|....+ .+...|...+..--..|..++-..+|++....-.+
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk------------------------------------ 582 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK------------------------------------ 582 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc------------------------------------
Confidence 766554 24455666666666667777777777776654221
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccccccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-TVVSWNSLIAGLIKNGDVESAREVFSEMPG--RDHISWNTMLGGLT 448 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~ 448 (844)
....+-....-+-..|++..|+.++...-+ | +...|-.-+.....+.++++|..+|.+... +....|.--+..--
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 122223333334444555555555544432 1 233455555555555555555555554443 34445554444445
Q ss_pred ccCChHHHHHHHHHHHhCCcccChhh-HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRVT-MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 527 (844)
-.+..++|++++++.++. -|+..- |..+-..+-+.++++.|+..|..-.+. .+..+..|-.|.+.=-+.|.+-.|.
T Consensus 663 ~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 567778888888777653 455443 334444556667777777776544443 2446678888888889999999999
Q ss_pred HHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 003148 528 QVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH 603 (844)
Q Consensus 528 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 603 (844)
.+|++.. .+|...|-..|..-.+.|+.+.|..+..+.++. -|+. ..|..-|....+.++-......+ .+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DAL---kk-- 812 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK-- 812 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHH---Hh--
Confidence 9999876 447789999999999999999999999988873 4544 67777777666666644333333 22
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 604 GVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 604 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
.+-|....-.+..++....+++.|.+.|.+. ...||. .+|.-+...+.+||.-+.-.+++.+...-+|.....|...
T Consensus 813 -ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 813 -CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred -ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 4556667777888899999999999999998 667764 4899899999999999999999999999999987777655
Q ss_pred H
Q 003148 682 S 682 (844)
Q Consensus 682 ~ 682 (844)
+
T Consensus 892 S 892 (913)
T KOG0495|consen 892 S 892 (913)
T ss_pred h
Confidence 4
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2.2e-14 Score=148.92 Aligned_cols=256 Identities=18% Similarity=0.191 Sum_probs=113.6
Q ss_pred ccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHH-HccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVAS-ACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG 521 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 521 (844)
+...+.+.|++++|++++++.......|+...|-.++. .+-..++.+.|.+.+..+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35566777888888888765544432455555544433 344567788888888877766533 55667777777 6889
Q ss_pred CHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccCcHHHHHHHHHH
Q 003148 522 DPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI-KPDSIVFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 522 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
++++|.+++...- .++...|..++..+.+.|+++++.++++++....- .++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887764 45667788888999999999999999999876432 34456677788888999999999999999
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..+ ..|+ ......++.++...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++++.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 988 6676 677888999999999999988888776 2234667899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.....+++++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999977654
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=4.6e-11 Score=130.09 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=92.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChHHHHHHHHHH
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP-----VEPNDVIWGSLLAAC 651 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~~~ 651 (844)
+.++..|.+.-+..++...-+.... +-+ | ..|..||+.+.+..++++|..+.++.. ..-|..-+..+.+..
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 4455566666566666654444333 111 2 679999999999999999999998873 223555677788888
Q ss_pred HhcCCHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 003148 652 QKHQNVDIAAYAAERITE---LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRK 708 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 708 (844)
.+++....+..+++...+ ..|.-......+.|..+..|+.+.-.+..+-+...|+.-
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888888877765 334334556677788889999999999999998888754
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.5e-12 Score=135.53 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=78.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH-
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC- 614 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~- 614 (844)
.+.+|-++...|.-+++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|...|+.... .+..||++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHH
Confidence 344555555555555555555555555555 4442 24444444444444455555555554433 33333332
Q ss_pred --HHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 615 --MVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 615 --li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
|.-.|.|.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|++.+++++-++|.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 334455555555555555554 44442 22333333344445555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHh
Q 003148 691 WTNVARVRLQMKE 703 (844)
Q Consensus 691 ~~~a~~~~~~m~~ 703 (844)
+++|.+.++.+++
T Consensus 573 ~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 573 YVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555544
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.2e-11 Score=122.44 Aligned_cols=130 Identities=8% Similarity=-0.010 Sum_probs=74.1
Q ss_pred hhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc----cH
Q 003148 66 YISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKF----TF 141 (844)
Q Consensus 66 ~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~ 141 (844)
+...|.+.|..... ..+|+..++-+.+..|.+..-..--.+-..+.+...+..|+.+|+.....-...+.. .+
T Consensus 203 vl~nlaqqy~~ndm---~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEANDM---TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhhhHH---HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34445556665555 667777777666555543222222223345667777777777776555432112222 23
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 003148 142 PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
+.+-..+.+.|.++.|..-|++..+.. |+..+.-.|+-.+.--|+-+..++.|.+|.
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 333344556777777777777776653 665555555555666677777777777664
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=2.3e-09 Score=109.18 Aligned_cols=500 Identities=12% Similarity=0.083 Sum_probs=307.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003148 172 DVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248 (844)
Q Consensus 172 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 248 (844)
+..+|-....-=...+++..|+.+|+.... ++...|---+..=.++.....|..++++.+..=.+.|..=| .-+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHH
Confidence 334444333333455677888888887654 56667777777778888888888888887654222232222 22222
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCceehHHHHHHHHHcCChHHHHH
Q 003148 249 CAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGEC--KDRNLVLCNTIMSNYVRLGLAREALA 326 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~ 326 (844)
=-..|++..|+++|..-.+ ..|+...+++.|++=.+...++.|+.++++. ..|++..|--...---++|+...|..
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 2345777777777776654 3677777777777777777777777777764 35677777666666667777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHh----hcCChhhHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHcCCHHHHHHHHhhc
Q 003148 327 ILDEMLLHGPRPDRVTMLSAVSASA----QLGDLLCGRMCHGYVLRNGLEG-WDSICNTMIDMYMKCGKQEMACRIFDHM 401 (844)
Q Consensus 327 l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m 401 (844)
+|....+. -.|...-..++.+++ +....+.++-++...+..-... ...+|..+...--+.|+........-.-
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 77666543 111221122222222 2334444444554444432111 1223333333333333322221111000
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHHHHHHHHHHHhCCcccCh------
Q 003148 402 SNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR------ 472 (844)
Q Consensus 402 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------ 472 (844)
.. --++.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.
T Consensus 307 Rk-----------------------~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~ 362 (677)
T KOG1915|consen 307 RK-----------------------FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWR 362 (677)
T ss_pred hh-----------------------hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHH
Confidence 00 001111112 3345555555555667777777777777654 44421
Q ss_pred -hhHHhHHHHc---cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH----hcCCHHHHHHHHHhcC--CCCHhHHH
Q 003148 473 -VTMVGVASAC---GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA----RCGDPQRAMQVFRRME--KRDVSAWT 542 (844)
Q Consensus 473 -~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~ 542 (844)
..|.-+=-+| ....+++.+++++...++ -++...+++.-+--||+ ++.++..|.+++.... .|....+.
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 1111111122 345688888899988887 35556667766666665 6789999999998776 56677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR 621 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 621 (844)
..|..-.+.++++....++++.++ ..|.. .+|......=...|+.|.|..+|+-+++...+.-....|.+.||-=..
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 888888889999999999999999 67755 788888777788999999999999988743333335577788888889
Q ss_pred cCChHHHHHHHHhC-CCCCChHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh----cCCCCCc--hH
Q 003148 622 AGLLGEALDLIKSM-PVEPNDVIWGSLLAACQ-----KHQ-----------NVDIAAYAAERITE----LDPEKSG--VH 678 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~----~~p~~~~--~~ 678 (844)
.|.++.|..++++. ...+...+|-++..--. +.+ ++..|..+|+++.. .+|.... ..
T Consensus 520 ~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LL 599 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLL 599 (677)
T ss_pred cchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999988 44555668888765433 334 66788888888875 3332211 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-..-+.-..-|.-.+...+-.+|.+
T Consensus 600 Eaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 600 EAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHHHHhcCchhhHHHHHHhccH
Confidence 2333444566777777777776654
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.5e-10 Score=114.19 Aligned_cols=360 Identities=13% Similarity=0.096 Sum_probs=233.3
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHH--HH
Q 003148 269 GMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTML--SA 346 (844)
Q Consensus 269 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~l 346 (844)
+...|.+.+-...-.+-+.|....|+..|.....+-...|.+.+....-..+.+.+. .... |...|..-+. -+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHHH
Confidence 345555555555556667788888998888877655555555443222222222211 1111 1111111111 12
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHH
Q 003148 347 VSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAR 426 (844)
Q Consensus 347 l~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 426 (844)
..++-.....+++.+-.......|+..+..+-+-...++-...+++.|+.+|+++.+.|
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD--------------------- 292 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND--------------------- 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC---------------------
Confidence 23333444555555555555555655555554444444455555555555555554411
Q ss_pred HHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCc
Q 003148 427 EVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCD 506 (844)
Q Consensus 427 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 506 (844)
+.- --|..||+.+|-+-.....+.---+....+- +--
T Consensus 293 ----------PYR-----------------------------l~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR 329 (559)
T KOG1155|consen 293 ----------PYR-----------------------------LDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYR 329 (559)
T ss_pred ----------CCc-----------------------------chhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCC
Confidence 110 0123344444433221111111111111111 123
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTA 582 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 582 (844)
+.++..+.+-|+-.++.++|...|++..+ +-...|+-|..-|....+...|++-++..++ +.|- ...|.+|..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 45666777888888999999999998874 3457899999999999999999999999999 7774 4899999999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
|.-.+...-|+-+|++..+ ++|+ ...|.+|.+.|.+.++++||++-|++. .-+.+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999987 6675 889999999999999999999999998 222345788889999999999999
Q ss_pred HHHHHHHHHh-------cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 660 AAYAAERITE-------LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 660 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
|...+++-++ .+|+-..+..-|+.-+.+.++|++|..+.....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999887 344444455678888999999999988765543
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8e-11 Score=120.23 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=173.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 003148 485 LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELF 561 (844)
Q Consensus 485 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 561 (844)
.|+.-.+.+-+..+++....++ ..|--+..+|....+.++-.+.|+... ..|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4677777888888877654433 235566677999999999999998876 346677877777777788999999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 003148 562 NEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP 639 (844)
Q Consensus 562 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p 639 (844)
++.+. +.|+. ..|.-+..+..+.+.++++...|+..+++ ++--++.|+.....+...++++.|.+.++.. .+.|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999 88877 67888888888999999999999999984 4444789999999999999999999999987 5555
Q ss_pred C---------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 640 N---------DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 640 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+ +.+-.+++-.-. .+++.+|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 222233332223 38999999999999999999999999999999999999999999987654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.2e-11 Score=119.45 Aligned_cols=327 Identities=16% Similarity=0.134 Sum_probs=247.0
Q ss_pred hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccc-ccccccc
Q 003148 369 NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISW-NTMLGGL 447 (844)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~li~~~ 447 (844)
.+...|...+-...-.+-+.|..+.|+..|......-+..|.+-+....-..+.+.+..+....+..+...- --+..+|
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344555555555556677888999999999888776666677766666666666666666555543321111 1233455
Q ss_pred cccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCC--CCchhHHhHHhhhHHhcC--CH
Q 003148 448 TQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI--HCDMQLATALVDMFARCG--DP 523 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~k~g--~~ 523 (844)
....+.+++++-.......|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++ |.+.. ++
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHH
Confidence 55567888888888888877665555444444555677899999999999998743 13667777665 44433 22
Q ss_pred H-HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 524 Q-RAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 524 ~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
. -|..+++ +.+=-+.|.-.+.+-|...++.++|...|++.++ +.|.. ..|+.+..-|....+...|++-++.+++
T Consensus 316 s~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 2 2333332 2222344555566778888999999999999999 88887 5677777789999999999999999988
Q ss_pred hcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 602 IHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 602 ~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
+.|. -..|-.|+.+|.-.+...-|+-+|+++ .++| |...|.+|...|.+.++.++|++.+.+++.....+..++
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5564 678999999999999999999999999 7778 678999999999999999999999999999888888899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+.|+++|-+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=4.1e-12 Score=135.01 Aligned_cols=252 Identities=15% Similarity=0.088 Sum_probs=193.8
Q ss_pred ccccccccCChHHHHHHHHHHHhCC-cc-cChhhHHhHHHHccccCchHHHHHHHH-HHHHhCCCCchhHHhHHhhhHHh
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSER-IK-VDRVTMVGVASACGYLGALDLAKWIYA-YIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~li~~y~k 519 (844)
+..+|...+++++|.++|+...+.. .. -+...|+++|--.-+ +.+...+. .+++. -+..+.+|.++.+.|.-
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhh
Confidence 3445555566666666666655421 11 133445554432211 11122222 12222 24568899999999999
Q ss_pred cCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 003148 520 CGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
+++.+.|++.|++..+- ...+|+-+..-+.....+|.|...|+..+. +.|.. -.|..+...|.+.++++.|.-.
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHH
Confidence 99999999999998854 456778777788889999999999999987 88877 6899999999999999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
|+++.+ +.|. .....++...+-+.|+.|+|+.+++++ .++| |+..--.-+..+...+++++|+..+|++.++-|
T Consensus 512 fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 512 FQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 999987 7787 566777888999999999999999998 5555 444444455667778899999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 673 EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 673 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++..|.+++.+|-+.|+.+.|..-+..|.+.
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 99999999999999999999999988887764
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=2e-08 Score=106.20 Aligned_cols=410 Identities=13% Similarity=0.096 Sum_probs=221.5
Q ss_pred chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCC-CCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH
Q 003148 65 SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNET-SATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPF 143 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 143 (844)
.+|-.-+....+.|. +..-++.|++++. .+| ......|...|.-....+-++-++.+|++-.+. .| ..-.-
T Consensus 103 RIwl~Ylq~l~~Q~~---iT~tR~tfdrALr-aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~ee 174 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL---ITRTRRTFDRALR-ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREE 174 (835)
T ss_pred HHHHHHHHHHHhcch---HHHHHHHHHHHHH-hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHH
Confidence 344444555556666 7777777877654 233 233456777777777777777888888777653 22 22445
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHhhcCC--CCc--ccHHHH
Q 003148 144 VLNACTKSSAFGEGVQVHGAIVKMG------FDRDVFVENCLINFYGECGDI---VDGRRVFDEMSE--RNV--VSWTSL 210 (844)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~--~~~--~~~~~l 210 (844)
-|.-+++.+++++|.+.+..++... .+.+-..|+-+.+..++.-+. -....++..+.. +|. ..|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 5666667777777777777665321 134455666665555554322 223334444443 232 368888
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAV 290 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 290 (844)
.+.|.+.|.++.|.++|++-.+.- ....-|+.+.++|+.-.....+..+- ...+.+..+. ..-++
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl 319 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDL 319 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhH
Confidence 888888888888888888766542 23444666666665432221111111 0001111110 00122
Q ss_pred HHHHHHHHhcCC---------------CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh------hhHHHHHHH
Q 003148 291 DTAKQLFGECKD---------------RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR------VTMLSAVSA 349 (844)
Q Consensus 291 ~~A~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~ 349 (844)
+-...-|+.+.+ .++..|..-+. +..|+..+-+..|.+.... +.|-. ..|..+-..
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 333333443332 13444554443 3456777888888887664 33322 135556666
Q ss_pred HhhcCChhhHHHHHHHHHHhCCCch---hhHHHHHHHHHHHcCCHHHHHHHHhhcCC-C--------------------C
Q 003148 350 SAQLGDLLCGRMCHGYVLRNGLEGW---DSICNTMIDMYMKCGKQEMACRIFDHMSN-K--------------------T 405 (844)
Q Consensus 350 ~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~--------------------~ 405 (844)
|-..|+++.|+.+|....+..++.- ..+|..-.++-.+..+++.|.++.+.... | +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 7778888888888888877655432 55677777777778888888887776543 1 1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccc---cccccCChHHHHHHHHHHHhCCcccChh-hHHhHHHH
Q 003148 406 VVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLG---GLTQENMFEEAMELFRVMLSERIKVDRV-TMVGVASA 481 (844)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 481 (844)
...|...++.--..|-++....+++.+.+--+.|=-.+++ -+-.+..++++.+.+++-+..--.|+.. .|++.|.-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 2234444555555566666666666655422221111111 1223344566666665543332233332 22222222
Q ss_pred c---cccCchHHHHHHHHHHHH
Q 003148 482 C---GYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 482 ~---~~~~~~~~a~~i~~~~~~ 500 (844)
+ .....++.++.+|+++.+
T Consensus 557 fi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh
Confidence 1 112256666666666666
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.2e-09 Score=112.11 Aligned_cols=195 Identities=15% Similarity=0.104 Sum_probs=152.4
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGV 579 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 579 (844)
+....+|-++.--|.-.|+..+|++.|.+...-| ...|-....+|+-.|..++|+..+...-+ +-|.. ..+..+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHH
Confidence 3345556666666777788888888887766333 45788899999999999999988887776 44543 445556
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--C------CCC-ChHHHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--P------VEP-NDVIWGSLLA 649 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~------~~p-~~~~~~~ll~ 649 (844)
.--|...++.+-|.++|.++.. +-|. +..++-+.-+....+.+.+|..+|+.. + -.+ -..+|+.|..
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 6678888999999999988865 6565 556666666677788888888888776 1 112 2346888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+.+.|...+.+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987654
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=2.7e-10 Score=123.88 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
..+.+...++++.++ +.++.....+..++...|+.++|.+++++..+ ..||... .++.+....++.+++.+..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHH
Confidence 344556666666665 34677778888888888888888888888887 3454421 1233334558888888888
Q ss_pred HHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 597 RSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 597 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
+...+ -.|+ ...+.++..++.+.|++++|.+.|+++ ...|+...+..|...+.+.|+.++|...+++.+.+.
T Consensus 318 e~~lk---~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 318 RQQIK---QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88877 3344 556778888889999999999999887 777888888888888889999999999999888753
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=1.4e-09 Score=118.35 Aligned_cols=246 Identities=10% Similarity=0.015 Sum_probs=168.4
Q ss_pred cccCChHHHHHHHHHHHhCCcccChhhHH--hHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHH
Q 003148 448 TQENMFEEAMELFRVMLSERIKVDRVTMV--GVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQR 525 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 525 (844)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555556666666555442 33332222 11234455566666666666665554 3356667777788888888888
Q ss_pred HHHHHHhcCCCCH-----------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 526 AMQVFRRMEKRDV-----------SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 526 A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
|.+++..+.+... ..|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888877763221 13333444444445556666666665442 23355678888899999999999999
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
.+++..+ ..|+... .++......|+.+++.+.+++. ...|+ ...+..+...|...|++++|+..++++++.+|
T Consensus 285 ~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9998877 3444421 1223333558999999999887 55665 44677888889999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 673 EKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 673 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++ ..+..|+.++.+.|+.++|.+.+++-..
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87 4678999999999999999999987654
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=3.3e-10 Score=114.36 Aligned_cols=197 Identities=16% Similarity=0.065 Sum_probs=166.0
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 580 (844)
.....+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.+++..+ ..|+. ..+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 345667778899999999999999999776 33567888899999999999999999999998 44544 6677788
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 658 (844)
..+...|++++|.++++++.+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999999873222223556778889999999999999999987 44454 567888888999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+|...++++++..|.++..+..++.++...|++++|..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888888999999999999999999887765
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=1.2e-11 Score=128.38 Aligned_cols=255 Identities=13% Similarity=0.164 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhc-CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHH
Q 003148 380 TMIDMYMKCGKQEMACRIFDHM-SNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAME 458 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 458 (844)
.+..++.+.|++++|.++++.. .... +..|...|..+.......+++++|++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---------------------------~~~~~~~~~~~a~La~~~~~~~~A~~ 65 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---------------------------PPDDPEYWRLLADLAWSLGDYDEAIE 65 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---------------------------cccccccccccccccccccccccccc
Confidence 4566677777777777777432 2210 00234445555555555666666666
Q ss_pred HHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC----
Q 003148 459 LFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---- 534 (844)
Q Consensus 459 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---- 534 (844)
.++++...+.. +...+..++.. ...++++.|.++.....+.. ++...+..++..|.+.|+++++.++++.+.
T Consensus 66 ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 66 AYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 66666554322 22233333333 45566666666655443332 345556677788888899999988888754
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchH
Q 003148 535 -KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHY 612 (844)
Q Consensus 535 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 612 (844)
+.+...|..+...+.+.|+.++|++.+++.++ ..|+. .....++..+...|+.+++.++++...+.. +.+...+
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~ 217 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLW 217 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHH
Confidence 34677888889999999999999999999999 78875 567788889999999999999998887732 4556778
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
..+..+|...|+.++|+..+++. ...| |+.+...+..++...|+.++|..+.+++++
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88999999999999999999998 4455 667778888899999999999999888765
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=4.6e-10 Score=122.85 Aligned_cols=250 Identities=12% Similarity=0.034 Sum_probs=162.4
Q ss_pred ccCChHHHHHHHHHHHhCCcccChh-hHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRV-TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 527 (844)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777666553 34332 223334455666888888888877765543333334444577777888888888
Q ss_pred HHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH---hccCcHHHHHHHHHHhHh
Q 003148 528 QVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTAC---SHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 528 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~ 601 (844)
..++.+. ..+...+..+...|.+.|++++|.+++.++.+.++.+.......-..++ ...+..+++.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888776 3356677788888888888888888888888876433222111111111 222333344445555544
Q ss_pred hcC--CCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 602 IHG--VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVI---WGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 602 ~~~--~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
... .+.+...+..++..+...|+.++|.+.+++. ...||... +..........++.+.+++.+++.++..|+++
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 110 1125677888888888888888888888887 44555442 11111122334677888888888888888888
Q ss_pred --chHHHHHHHHHHcCCchHHHHHHHH
Q 003148 676 --GVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 676 --~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
.....++++|.+.|+|++|.+.+++
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7778888888888888888888884
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=1.5e-09 Score=118.84 Aligned_cols=279 Identities=13% Similarity=0.044 Sum_probs=144.2
Q ss_pred HcCCHHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc--cccccccccccccCChHHHHHH
Q 003148 387 KCGKQEMACRIFDHMSN--KTV-VSWNSLIAGLIKNGDVESAREVFSEMPG--RDH--ISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 387 ~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~l 459 (844)
..|+++.|.+.+....+ |+. ..+-.....+.+.|+.+.|.+.+.+..+ ++. ...-.....+.+.|++++|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655443 221 2223334445555666666666655422 121 1112234455566777777777
Q ss_pred HHHHHhCCccc-ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHh-------HHhhhHHhcCCHHHHHHHHH
Q 003148 460 FRVMLSERIKV-DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT-------ALVDMFARCGDPQRAMQVFR 531 (844)
Q Consensus 460 ~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-------~li~~y~k~g~~~~A~~~~~ 531 (844)
++++.+.. | +...+..+...+...|+++.+.+.+....+.+..+...... .+++.-......+...+.++
T Consensus 176 l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77776643 4 33345555666666777777777777666665433222211 11111112222344444555
Q ss_pred hcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH---HHHHHHHhccCcHHHHHHHHHHhHhhcCC
Q 003148 532 RMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF---VGVLTACSHGGLVNQGWHLFRSMTDIHGV 605 (844)
Q Consensus 532 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 605 (844)
..++ .+...+..+...+...|+.++|.+++++.++ ..||.... ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 5542 3667777777778888888888888887777 45555321 11111222335555666666555552211
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHh--C-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 606 SPQIVHYGCMVDLLGRAGLLGEALDLIKS--M-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
.|+.....++..++.+.|++++|.+.|++ . ...||...+..+...+.+.|+.++|.+++++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12113334555555555555555555552 2 3445555555555555555555555555555443
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=8.8e-09 Score=105.01 Aligned_cols=384 Identities=16% Similarity=0.174 Sum_probs=229.2
Q ss_pred cCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 003148 287 CGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCH 363 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 363 (844)
.+++..|+.+|++... +++..|--.+..-.++.+...|..++++.+..=+..|..-| --+..=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 4567788888887764 57778888888888888888888888887764333333222 2222233456666677666
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccc
Q 003148 364 GYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS--NKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWN 441 (844)
Q Consensus 364 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 441 (844)
..-.+ .+|+...+++.|++-.+...++.|+.++++.. .|++.+|-....--.++|++..|..+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~------ 236 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF------ 236 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH------
Confidence 65544 35666777777777777777777777777643 466666666666666666666666665543321
Q ss_pred cccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC-chhHHhHHhhhHHhc
Q 003148 442 TMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFARC 520 (844)
Q Consensus 442 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~ 520 (844)
.|+-.++..+ |.+...--.....++.++-++..+++.-... ...+|..+...=-+-
T Consensus 237 --------~~~d~~~e~l---------------fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 237 --------LGDDEEAEIL---------------FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred --------hhhHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 0001111111 1111111122345566666666666543222 133444444333334
Q ss_pred CCHHHHHHHH---Hh-----cC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHH---HH-HH-H
Q 003148 521 GDPQRAMQVF---RR-----ME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFV---GV-LT-A 582 (844)
Q Consensus 521 g~~~~A~~~~---~~-----~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~---~l-l~-a 582 (844)
|+....+.+. ++ +. .-|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|. .| ++ +
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHH
Confidence 4433333222 11 11 225567777777777777888888888877763 44522 1111 11 11 2
Q ss_pred H---hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH----HhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHh
Q 003148 583 C---SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL----GRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQK 653 (844)
Q Consensus 583 ~---~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~----~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~ 653 (844)
| ....+++.+.++++...+ +.|. ..+++-+--+| .|+.++..|.+++-.+ |.-|-..++...+..-.+
T Consensus 373 lyeEle~ed~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 2 235677777777777776 4444 44554443333 3667777787777766 667777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.++++....++++.++..|.+..++...+..-...|++|.|+.+|+...++..
T Consensus 450 L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 77788888888888888887777777777777777888888888777776543
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.3e-11 Score=89.71 Aligned_cols=50 Identities=36% Similarity=0.508 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003148 202 RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAK 251 (844)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 251 (844)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=3.5e-07 Score=99.52 Aligned_cols=443 Identities=16% Similarity=0.110 Sum_probs=245.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 003148 168 GFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVC 244 (844)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 244 (844)
.+.-|..+|-.|.-+...+|+++.+-+.|++... .....|+.+-..|.-.|....|+.+.+.-......|+..+---
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4566888999999999999999999999987653 3445799999999999999999999988765443454444333
Q ss_pred H-HHHHH-hcCCchHHHHHHHHHHHhC--C--CcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHc
Q 003148 245 V-ISACA-KLQNLELGDRVCAYIDELG--M--KANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRL 318 (844)
Q Consensus 245 l-l~a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 318 (844)
+ -+.|. +.+..++|...-..+++.. . ......|-.+.-+|...- +...+|.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HH
Confidence 3 33444 3456666665555554421 1 111222222222222110 00000100 11
Q ss_pred CChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHH
Q 003148 319 GLAREALAILDEMLLHG-PRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRI 397 (844)
Q Consensus 319 g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (844)
....++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+.....++.+-..+...+.-|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 12356677777766543 234433333322 334455555555555555554444555555555555555555555555
Q ss_pred HhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhC--CcccChhhH
Q 003148 398 FDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSE--RIKVDRVTM 475 (844)
Q Consensus 398 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~ 475 (844)
.+...+. .. .|-+....-+..-..-++.++|+.....+... ...|-..+.
T Consensus 536 vd~al~E---------------------------~~-~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 536 VDAALEE---------------------------FG-DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred HHHHHHH---------------------------hh-hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 4443220 00 11111111122223356667777666665431 000100000
Q ss_pred HhHHHHccccCchHHHHHHHHHHHHhCCC-------CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 003148 476 VGVASACGYLGALDLAKWIYAYIEKNGIH-------CDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAM 548 (844)
Q Consensus 476 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-------~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 548 (844)
. .|.. .+ .+.|.. ..+.++..+.. ++..-
T Consensus 588 ----~----~g~~---~~-----lk~~l~la~~q~~~a~s~sr~ls~----------------------------l~a~~ 623 (799)
T KOG4162|consen 588 ----D----EGKL---LR-----LKAGLHLALSQPTDAISTSRYLSS----------------------------LVASQ 623 (799)
T ss_pred ----h----hhhh---hh-----hhcccccCcccccccchhhHHHHH----------------------------HHHhh
Confidence 0 0000 00 000100 00111111110 11000
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh--------hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDS--------IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL 619 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 619 (844)
.+.-..+.. |...-+.|+. ..|......+...+..++|...+.+..+ +.|- ...|.-....+
T Consensus 624 ~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 624 LKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLL 694 (799)
T ss_pred hhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHH
Confidence 000000000 1111112221 1233445567778888888888777765 4444 55666677888
Q ss_pred HhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 620 GRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAY--AAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
...|+++||.+.|... .+.||.+ +..++...+.+.|+-..|.. ++..+++++|.++.+|..|+.++-+.|+.++|.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 8999999999999887 7788654 77888888899998888887 999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCcccE
Q 003148 696 RVRLQMKEQGIRKLPGSSS 714 (844)
Q Consensus 696 ~~~~~m~~~~~~~~~~~s~ 714 (844)
+.|....+..- ..|-.+|
T Consensus 775 ecf~aa~qLe~-S~PV~pF 792 (799)
T KOG4162|consen 775 ECFQAALQLEE-SNPVLPF 792 (799)
T ss_pred HHHHHHHhhcc-CCCcccc
Confidence 99998876532 3444444
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.5e-06 Score=93.67 Aligned_cols=492 Identities=13% Similarity=0.138 Sum_probs=289.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC--CCcccHHHH-----HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003148 176 ENCLINFYGECGDIVDGRRVFDEMSE--RNVVSWTSL-----ICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 248 (844)
+..+.+.|.+.|-...|.+.+..+.. |.++ .+.+ +-+|.-.-.++++++.++.|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556777888888888888877653 2222 1111 22344455678899999999998888887777666666
Q ss_pred HHhcCCchHHHHHHHHHHHh-----------CCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------------
Q 003148 249 CAKLQNLELGDRVCAYIDEL-----------GMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--------------- 302 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------- 302 (844)
|...-..+.-.++|+..... ++..|+.+.--.|.+.++.|++.+..++-++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55544444444555443321 3456677777889999999999998888765321
Q ss_pred ----C------------Ccee--h----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhh-------------HHHHH
Q 003148 303 ----R------------NLVL--C----NTIMSNYVRLGLAREALAILDEMLLHGPRPDRVT-------------MLSAV 347 (844)
Q Consensus 303 ----~------------~~~~--~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------------~~~ll 347 (844)
| |.+. | -..|..|++.=++.+.-.+.-.+++..+ +... ..-+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHH
Confidence 1 1111 1 1123344443222222222222221111 1111 11222
Q ss_pred HHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHH-HH-----------HHhhcCCCCc---------
Q 003148 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMA-CR-----------IFDHMSNKTV--------- 406 (844)
Q Consensus 348 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~-----------~f~~m~~~~~--------- 406 (844)
.-+-+.+++..-...++..+..|.. |+.++|+|...|...++-.+- ++ -+.+-.+|..
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3344445555555566666667755 778889998888765432211 10 0111111100
Q ss_pred ------------chHHHHHHHHHhcCCHHHHHHHHhhC----------------CC-CCccccccccccccccCChHHHH
Q 003148 407 ------------VSWNSLIAGLIKNGDVESAREVFSEM----------------PG-RDHISWNTMLGGLTQENMFEEAM 457 (844)
Q Consensus 407 ------------~~~~~li~~~~~~g~~~~A~~~~~~m----------------~~-~~~~~~~~li~~~~~~g~~~~A~ 457 (844)
..|.....-+.+..+.+-=.+++.+- ++ .|+..-..-+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 11222233344444444333333211 11 35555556678888888889999
Q ss_pred HHHHHHHhCCccc-ChhhHHhHHH--H--------------------------ccccCchHHHHHHHHHHHHhCCCCchh
Q 003148 458 ELFRVMLSERIKV-DRVTMVGVAS--A--------------------------CGYLGALDLAKWIYAYIEKNGIHCDMQ 508 (844)
Q Consensus 458 ~l~~~m~~~g~~p-~~~t~~~ll~--a--------------------------~~~~~~~~~a~~i~~~~~~~g~~~~~~ 508 (844)
+++++..-..-.- ....+..+|- | +...+..++|..||.. +..+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hcccHH
Confidence 9988876432111 1111111111 1 1111122222222221 112222
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL 588 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 588 (844)
..+.||+ .-++++.|.++-++..+ ...|..+..+-.+.|...+|++-|-+ .-|...|..++.++++.|.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCc
Confidence 2223332 23556666666555544 35799999999999999999987742 2345789999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
+++-..++....+ ..-+|.++ +.||-+|++.+++.|-++++. .||..-......-|...|.++.|.-++..
T Consensus 1149 ~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 9999999987776 45556654 579999999999999988874 47888888889999999999988877763
Q ss_pred hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 669 ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.+.|..|+..+...|.+..|..--++..
T Consensus 1220 ------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1220 ------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4578888888888998888876665543
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=2.7e-06 Score=90.62 Aligned_cols=545 Identities=11% Similarity=0.085 Sum_probs=293.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 104 FMYNSLIRGYSCIGLGVEAISLYVELAGF-GILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
..|-.-+....++|+...-...|++.... .+......|...++-..+.+-++.+..++.+.++.. +..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 47888888888999999999999886653 344455679999999889999999999999998653 3446777888
Q ss_pred HHhcCChHHHHHHHhhcCCCC----------cccHHHHHHHHHhCCCchH---HHHHHHHHHHcCCCCCcc--hHHHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSERN----------VVSWTSLICACARRDLPKE---AVYLFFEMVEEGIKPNSV--TMVCVIS 247 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~~~----------~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~pd~~--t~~~ll~ 247 (844)
+++.+++++|.+.+......| -..|+-+-.-.+++.+.-. ...+++.+.. .-||.. .|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHH
Confidence 899999999999998876432 2346666555555443322 2223333322 223332 3556666
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCceehHHHHHHHHHcCCh
Q 003148 248 ACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK------DRNLVLCNTIMSNYVRLGLA 321 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~ 321 (844)
-|.+.|.++.|+.+++..+..- ..+.-++.+-+.|+....-.-+.++= +. +.+.+.+
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl------------- 319 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL------------- 319 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH-------------
Confidence 6666666666666666555432 23333444444444432211111110 00 0111111
Q ss_pred HHHHHHHHHHHhcCC-----------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhC-----CCchhhHHHHHHHHH
Q 003148 322 REALAILDEMLLHGP-----------RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNG-----LEGWDSICNTMIDMY 385 (844)
Q Consensus 322 ~~A~~l~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~~y 385 (844)
+-.+.-|+.+...+. .-+..+|..-... ..|+..+-...+..+++.- ...-...+..+.+.|
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 122223333332211 1111222211111 1233333344444444421 112234577788888
Q ss_pred HHcCCHHHHHHHHhhcCCCCc-------chHHHHHHHHHhcCCHHHHHHHHhhCCC-CCccccccccccccccCChHHHH
Q 003148 386 MKCGKQEMACRIFDHMSNKTV-------VSWNSLIAGLIKNGDVESAREVFSEMPG-RDHISWNTMLGGLTQENMFEEAM 457 (844)
Q Consensus 386 ~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~ 457 (844)
-..|+++.|+.+|++..+-+- .+|..-..+-.+..+++.|.++.+.... |.... ..|...+.+.++.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQAR 472 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHH
Confidence 888888888888888766222 2344444555566666677766665432 11000 1222222222211
Q ss_pred HHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---
Q 003148 458 ELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--- 534 (844)
Q Consensus 458 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--- 534 (844)
+++ +...|+..+.---..|-++..+.+++.+++..+.....+-| ..-.+-...-++++.+++++-.
T Consensus 473 -lhr---------SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 473 -LHR---------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred -HHH---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccC
Confidence 111 11223333333334467778888888888777643333322 2222345566788888888755
Q ss_pred -CCCH-hHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhHHHHHHHH--HhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 535 -KRDV-SAWTAAIGAMAME---GNGEQAVELFNEMLRQGIKPDSIVFVGVLTA--CSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 535 -~~~~-~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
-|++ ..|++.+.-+.+. -..+.|..+|++.++ |..|...-+..|+-| =-.-|....|..+++++.. ++++
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~ 618 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKE 618 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCH
Confidence 2343 4688877666542 367888888888888 677766433333322 2245788888888888765 3444
Q ss_pred C--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHH---HHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHH
Q 003148 608 Q--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGS---LLAACQKHQNVDIAAYAAERITEL-DPE-KSGVHV 679 (844)
Q Consensus 608 ~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~ 679 (844)
. ...|+..|.--...=-...-.++++++ ..-||..+-.. +...-.+.|.++.|..++...-++ +|. ++..|.
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH
Confidence 3 445555443221111112223333333 22344332221 222235567777777777776664 443 344566
Q ss_pred HHHHHHHHcCCch
Q 003148 680 LLSNIYASAGKWT 692 (844)
Q Consensus 680 ~l~~~~~~~g~~~ 692 (844)
.--+--.+-|+-+
T Consensus 699 twk~FEvrHGned 711 (835)
T KOG2047|consen 699 TWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHhcCCHH
Confidence 6655556667633
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=9.8e-11 Score=85.02 Aligned_cols=50 Identities=32% Similarity=0.535 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 003148 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH 585 (844)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (844)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=6.8e-09 Score=108.04 Aligned_cols=211 Identities=15% Similarity=0.060 Sum_probs=154.7
Q ss_pred CchHHHHHHHHHHHHhC-CCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 003148 486 GALDLAKWIYAYIEKNG-IHC--DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666665432 222 24567778888999999999999998876 3467899999999999999999999
Q ss_pred HHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--C
Q 003148 560 LFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--P 636 (844)
Q Consensus 560 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~ 636 (844)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 78876 6788888889999999999999999987 5565432222223345678899999999765 3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 637 VEPNDVIWGSLLAACQKHQNVDIAAYAAERIT-------ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 637 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..|+...|. ......|+...+ ..++.+. ++.|+.+..|..|+.+|.+.|++++|...+++..+..
T Consensus 195 ~~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334433332 222334555443 2333333 4566777899999999999999999999999988654
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.3e-07 Score=97.23 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=162.4
Q ss_pred cccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH
Q 003148 448 TQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM 527 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 527 (844)
.-.|+.-.|...|+..+.....++.. |.-+-.++....+.++..+.|..+.+.+. -++.+|---..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 33566777777777777654333332 55566667777888888888888877653 35666766777788889999999
Q ss_pred HHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 003148 528 QVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH 603 (844)
Q Consensus 528 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 603 (844)
.=|++...- ++..|-.+-.+.-+.+++++++..|++.++ --|+. ..|+.....+...+++++|.+.|+..++
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999987743 456676676676777899999999999998 46766 6788888899999999999999999987
Q ss_pred CCCCCc---------chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 604 GVSPQI---------VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 604 ~~~p~~---------~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
++|+. .+.-.++-+- -.+++.+|+++++++ .+.|. ...+.+|...-.+.|++++|+++|++...+-.
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55551 1111122111 238899999999998 77774 45788888888999999999999999887543
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=6.9e-08 Score=97.36 Aligned_cols=281 Identities=14% Similarity=0.103 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHH
Q 003148 318 LGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRI 397 (844)
Q Consensus 318 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 397 (844)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.+...+-+..-+++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554443 2233344444555566666666666655554455555566666666777777777666
Q ss_pred HhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccCh-----
Q 003148 398 FDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR----- 472 (844)
Q Consensus 398 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----- 472 (844)
.+++.+ |..+++.........|.+.|++.+.+.+..+|.+.|+--|.
T Consensus 176 v~~ll~----------------------------~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 176 VDQLLE----------------------------MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred HHHHHH----------------------------hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 655443 11133444444555555556666666666666555533322
Q ss_pred --hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 473 --VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 473 --~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
.++..++.-+... +..+.-...++..+ +.++..-.+++.-
T Consensus 228 e~~a~~glL~q~~~~-----------------------------------~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 228 EQQAWEGLLQQARDD-----------------------------------NGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHHHHHHHhcc-----------------------------------ccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 1233333322222 22222233344443 2234444455555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 627 (844)
+.+.|+.++|.++.++..+.+..|+- ..+-.+.+-++...-++..+...+.++..| ..+.+|..+|.+.+.+.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHH
Confidence 66666666666666666665555551 222244455555555555555554344333 455566666666666666
Q ss_pred HHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 628 ALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 628 A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
|.+.|+.. +..|+...|+-+..++.+.|+.++|.+..++.+
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666654 555666666666666666666666666665555
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=1.4e-08 Score=115.49 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=176.7
Q ss_pred ChHHHHHHHHHHHhCCcccChhh-HHhHHHHc---------cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC
Q 003148 452 MFEEAMELFRVMLSERIKVDRVT-MVGVASAC---------GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG 521 (844)
Q Consensus 452 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~---------~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 521 (844)
..++|+.+|++..+. .|+... +..+..++ ...++.++|...+..+++.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457788888887763 554432 22222221 13345788888888888765 346677788888899999
Q ss_pred CHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHH
Q 003148 522 DPQRAMQVFRRME--K-RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 522 ~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
++++|...|++.. . .+...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 3 3466888899999999999999999999999 778763 33344555667899999999999
Q ss_pred HhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 598 SMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 598 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
++.+. ..|+ ...+..+...|...|+.++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 2354 445777888999999999999999987 5556544 4555555667667 47777777777643333
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 675 SGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333477788888998888877 6666653
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=1.4e-08 Score=109.85 Aligned_cols=230 Identities=14% Similarity=0.151 Sum_probs=170.4
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHHh-----C-CCCch-hHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C-C
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEKN-----G-IHCDM-QLATALVDMFARCGDPQRAMQVFRRMEK-------R-D 537 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g-~~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~-~ 537 (844)
.|+..+...|...|+++.|...+....+. | ..|.+ ...+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777665543 2 12222 2234467788899999999999988761 1 1
Q ss_pred ---HhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 538 ---VSAWTAAIGAMAMEGNGEQAVELFNEMLR-----QGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 538 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
..+++.|..+|...|++++|...+++..+ .|..+.. .-+..+...|...+.+++|..+++...+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 35678888899999999998888877654 2333332 3467777789999999999999998877554222
Q ss_pred --C----cchHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 003148 608 --Q----IVHYGCMVDLLGRAGLLGEALDLIKSM---------PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITE-- 669 (844)
Q Consensus 608 --~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 669 (844)
+ ..+|+.|..+|...|+++||+++++++ ...+. ...++.|..+|.+.++.++|.+.|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2 457899999999999999999999887 11232 34677888899999999999999888875
Q ss_pred --cCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 670 --LDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 670 --~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..|+++ .+|..|+-+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345554 467899999999999999999988875
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.5e-06 Score=91.67 Aligned_cols=577 Identities=13% Similarity=0.075 Sum_probs=318.3
Q ss_pred hhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHH-----HHHHHcCCCchHHHHHHHHHHhCCCCCCcccH
Q 003148 67 ISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSL-----IRGYSCIGLGVEAISLYVELAGFGILPDKFTF 141 (844)
Q Consensus 67 ~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 141 (844)
+-.+-+.|.+.|- +..|++.+..+- .+ .+. +..+.+ +-.|.-.-.++++++.++.|...+++.|..+.
T Consensus 609 ra~IAqLCEKAGL---~qraLehytDl~--DI-KR~-vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~ 681 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGL---LQRALEHYTDLY--DI-KRV-VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIV 681 (1666)
T ss_pred HHHHHHHHHhcch---HHHHHHhcccHH--HH-HHH-HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4556667777777 777777666221 00 011 111111 12333344677888888888887777776555
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH-----------hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---------
Q 003148 142 PFVLNACTKSSAFGEGVQVHGAIVK-----------MGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE--------- 201 (844)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------- 201 (844)
.-+..-|...-..+.-.++|+.... -++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 682 VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNf 761 (1666)
T KOG0985|consen 682 VQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNF 761 (1666)
T ss_pred HHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHH
Confidence 4444444433333333344443322 13567777888889999999999888887654320
Q ss_pred ----------------------CCcccH------HHHHHHHHhCCCchHHHHHHHHHHHcCCC-----------CCcchH
Q 003148 202 ----------------------RNVVSW------TSLICACARRDLPKEAVYLFFEMVEEGIK-----------PNSVTM 242 (844)
Q Consensus 202 ----------------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------pd~~t~ 242 (844)
+|.+.| --.|..|++.-++...-.+.-.+.+-... -..+..
T Consensus 762 LkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~ 841 (1666)
T KOG0985|consen 762 LKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPV 841 (1666)
T ss_pred HHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCCh
Confidence 111111 12244455443333322222222211110 011122
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH----------HHHHHhcCCCCce------
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTA----------KQLFGECKDRNLV------ 306 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A----------~~~f~~m~~~~~~------ 306 (844)
.-+..-+-+.+++..-...++..+..| ..|+.++|+|...|....+-.+- ..+=+-..+||..
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEee
Confidence 334444556667777777777777777 45888999998888765432211 0000001111110
Q ss_pred -----------------ehHHHHHHHHHcCChH---HHH--------HHHHHHHhcCCC--CChhhHHHHHHHHhhcCCh
Q 003148 307 -----------------LCNTIMSNYVRLGLAR---EAL--------AILDEMLLHGPR--PDRVTMLSAVSASAQLGDL 356 (844)
Q Consensus 307 -----------------~~~~li~~~~~~g~~~---~A~--------~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~ 356 (844)
.|....+-+....+.+ +.+ .+.++..+.++. -|....+....++-..+-.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 0111111222222211 111 223333333221 1222333444555544444
Q ss_pred hhHHHHHHHHHH--hCCCchhhHHHHHHHHHHH---------------------------cCCHHHHHHHHhhcCCCCcc
Q 003148 357 LCGRMCHGYVLR--NGLEGWDSICNTMIDMYMK---------------------------CGKQEMACRIFDHMSNKTVV 407 (844)
Q Consensus 357 ~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~---------------------------~g~~~~A~~~f~~m~~~~~~ 407 (844)
.+-.++++.++- +.+..+....|.|+-.-.| .+-+++|..+|+...- +..
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-n~~ 1079 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-NVS 1079 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc-cHH
Confidence 444444444431 1223333333444333333 3334445555444321 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 408 SWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
..+.||. .-+.+++|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCc
Confidence 1122221 22445555555554433 456888888888899999988877553 366778889999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+++-...+.++.+..-+|.+. +.||-+|+|.+++.+-++++ ..||+.-......-|-..|.++.|.-+|...-
T Consensus 1149 ~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-- 1221 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS-- 1221 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh--
Confidence 999988888888877666543 57888899998888877664 35666666677777778888887777665432
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCC--CChHHHH
Q 003148 568 GIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVE--PNDVIWG 645 (844)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~ 645 (844)
-|..|...+.+.|.++.|...-+++ .+..+|.-.-.++...+.+.-|. -.++. -...-..
T Consensus 1222 -------N~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1222 -------NFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELE 1283 (1666)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHH
Confidence 3666666777777777776655443 23456666666665544433221 11321 1233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
-|+.-|...|-+++-+..++..+.++..+-+.+.-|+-+|++-
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 6777788888899999999988888888888888888877654
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=1.1e-08 Score=116.33 Aligned_cols=211 Identities=9% Similarity=-0.028 Sum_probs=164.2
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH---------hcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFA---------RCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN 553 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 553 (844)
+.+++|...+...++.... +...+..+..+|. ..+++++|...+++.. ..+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3567888888888776422 3445555554443 2345889999999877 3467788889889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChHHHHHH
Q 003148 554 GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLGEALDL 631 (844)
Q Consensus 554 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~ 631 (844)
+++|+..|++.++ ..|+. ..+..+..++...|++++|...++++.+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 77886 5677788899999999999999999988 566632 333445567778999999999
Q ss_pred HHhC--CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 632 IKSM--PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 632 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++. ...|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9887 22454 4456667777889999999999999998888888878888888888888 5888877777654
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.8e-07 Score=88.99 Aligned_cols=266 Identities=12% Similarity=0.085 Sum_probs=182.1
Q ss_pred CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHhhCCCC---Ccccccccc
Q 003148 371 LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSL---IAGLIKNGDVESAREVFSEMPGR---DHISWNTML 444 (844)
Q Consensus 371 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li 444 (844)
+..++....++.+.|...|+.++|...|++..--|+.+...| .-.+.+.|+.+....+...+... ....|-.-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 455677778899999999999999999998765443332222 22344556666555555444332 223344434
Q ss_pred ccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 445 GGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 445 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
...-...+++.|+.+-++.++. .|+ +...+-.-...+...|+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r----------------------------------~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPR----------------------------------NHEALILKGRLLIALERHT 351 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--Ccc----------------------------------cchHHHhccHHHHhccchH
Confidence 4444555666666665555432 121 1111111123345568888
Q ss_pred HHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH-HHHh-ccCcHHHHHHHHHH
Q 003148 525 RAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVL-TACS-HGGLVNQGWHLFRS 598 (844)
Q Consensus 525 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll-~a~~-~~g~~~~a~~~~~~ 598 (844)
+|.-.|+... .-+..+|.-|+..|...|+..+|.-+-+.... .-|+. .+...+. ..|. ....-++|..++++
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 8888887655 34778899999999999999999888877666 34444 4444442 2333 33346789999988
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
..+ +.|+ ....+.+..++.+.|+.+++..++++. ...||...-+.|....+..+.+.+|...|..++.++|++-.
T Consensus 430 ~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 430 SLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 876 7888 666778889999999999999999987 67789999999999999999999999999999999998853
Q ss_pred h
Q 003148 677 V 677 (844)
Q Consensus 677 ~ 677 (844)
+
T Consensus 507 s 507 (564)
T KOG1174|consen 507 T 507 (564)
T ss_pred H
Confidence 3
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=1e-08 Score=95.60 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=141.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 618 (844)
...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44567789999999999999999999 78887 6888888899999999999999999987 6776 6788889999
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 619 LGRAGLLGEALDLIKSMPVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
+|..|++++|...|+++-..|+ ..+|..+.....+.|+.+.|+..+++.++++|+.+.....++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999833332 457888877778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
..+++.....+
T Consensus 193 r~~~~~~~~~~ 203 (250)
T COG3063 193 RLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHhcc
Confidence 99999887765
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.3e-08 Score=97.46 Aligned_cols=296 Identities=13% Similarity=0.169 Sum_probs=180.9
Q ss_pred cCCHHHHHHHHhhcCCCCcchH---HHHHHHHHhcCCHHHHHHHHhhCCCCCccccc-------cccccccccCChHHHH
Q 003148 388 CGKQEMACRIFDHMSNKTVVSW---NSLIAGLIKNGDVESAREVFSEMPGRDHISWN-------TMLGGLTQENMFEEAM 457 (844)
Q Consensus 388 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~li~~~~~~g~~~~A~ 457 (844)
..+.++|.++|-+|.+.|..++ -+|.+.|.+.|.++.|.++.+.+.++...|++ .+..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678899999999887555444 45777888888888888888776654333322 2334455555556666
Q ss_pred HHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC
Q 003148 458 ELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD 537 (844)
Q Consensus 458 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~ 537 (844)
.+|..+.+.+. .-.....-|+..|-+..++++|+++-+++.+-+
T Consensus 128 ~~f~~L~de~e------------------------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEGE------------------------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcchh------------------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 66655544321 011222345556666666666666655444221
Q ss_pred Hh--------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC
Q 003148 538 VS--------AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ 608 (844)
Q Consensus 538 ~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 608 (844)
.. -|--+...+....+.++|..++.+..+ ..|+.+- =..+.......|+++.|.+.++...+ -.|+
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e---Qn~~ 246 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLE---QNPE 246 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHH---hChH
Confidence 11 233344555556677777777777777 5566533 23344566677788888888877766 2343
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 609 --IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 609 --~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
.++...|..+|...|+.++...++.++ ...++...-..+...-..+.-.+.|...+.+-+...|.--+.|..+---.
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 556667777788888888877777766 44444444444444433344456666666666777776544444443323
Q ss_pred --HHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEE
Q 003148 686 --ASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEF 724 (844)
Q Consensus 686 --~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f 724 (844)
+..|++.+..-.++.|....++..|.+.....+-..|.|
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 345778888889999988878777776555544444444
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.5e-06 Score=91.87 Aligned_cols=437 Identities=14% Similarity=0.105 Sum_probs=229.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHH--HHHHH--Hh
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNA--LVDMY--MK 286 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y--~~ 286 (844)
+.-+.++|++++|.....++...+ +-|...+..=+-+..+.+.++.|..+. .+.+.. .+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~~---~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI---KKNGAL---LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcchh---hhcchhhHHHHHHHHH
Confidence 455677888888888888887765 233444555555666777777776333 222210 11111 23333 35
Q ss_pred cCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhcCChhhHHHHHHH
Q 003148 287 CGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRV-TMLSAVSASAQLGDLLCGRMCHGY 365 (844)
Q Consensus 287 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~ 365 (844)
.+..|+|...++....-+..+-..-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-+.. .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----H
Confidence 6777777777774444443344444556667777777777777776654321111 111111111100 000 1
Q ss_pred HHHhCCCc--hhhHHHHHHHHHHHcCCHHHHHHHHhhcC--------CCCc-----chHHHHHHHHHhcCCHHHHHHHHh
Q 003148 366 VLRNGLEG--WDSICNTMIDMYMKCGKQEMACRIFDHMS--------NKTV-----VSWNSLIAGLIKNGDVESAREVFS 430 (844)
Q Consensus 366 ~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--------~~~~-----~~~~~li~~~~~~g~~~~A~~~~~ 430 (844)
+......| +-..+-.....+...|++.+|+++++... +.|. ..--..
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~------------------ 225 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP------------------ 225 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH------------------
Confidence 11111111 11111112333455566666666655541 1100 000000
Q ss_pred hCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhH---HHHccccCchHH--------------HHH
Q 003148 431 EMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV---ASACGYLGALDL--------------AKW 493 (844)
Q Consensus 431 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~--------------a~~ 493 (844)
.---|.-.+...|+.++|.+++...++.. .+|....... |.+...-.++-. +..
T Consensus 226 --------IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 226 --------IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred --------HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 00112223444566666666665555442 2232111111 111111111110 000
Q ss_pred HHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC-HhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCC
Q 003148 494 IYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD-VSAWTAAIGAMAM--EGNGEQAVELFNEMLRQGIK 570 (844)
Q Consensus 494 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~ 570 (844)
....+.. .-.....--++++.+|. +..+.+.++-...+... ...+.+++....+ .....+|.+++...-+ -.
T Consensus 297 ~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~ 371 (652)
T KOG2376|consen 297 LLSKLSK-KQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GH 371 (652)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cC
Confidence 1111100 00112223356677765 45577777777777433 3445555544322 2357778888887776 35
Q ss_pred CCh--hHHHHHHHHHhccCcHHHHHHHHH--------HhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-----
Q 003148 571 PDS--IVFVGVLTACSHGGLVNQGWHLFR--------SMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----- 635 (844)
Q Consensus 571 p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----- 635 (844)
|.. +.....+......|+++.|.+++. ...+ .+..| .+...++.+|.+.++-+-|..++.+.
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 555 344455556778999999999998 5544 33344 45667889999888766666666554
Q ss_pred ---CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 636 ---PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 636 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
...+. ..+|.-+...-.++|+.++|...++++++.+|++....+.+..+|+.. +.+.|..+-
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 22222 224444555556789999999999999999999999999999988865 345555443
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=8.6e-06 Score=87.59 Aligned_cols=378 Identities=14% Similarity=0.127 Sum_probs=216.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh--cCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 003148 278 NALVDMYMKCGAVDTAKQLFGE--CKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGD 355 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~--m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 355 (844)
-+-|..|.|.|..-.|.+.-.. ..-.|......+..++.+...+++|-++|+++.. +-..+..+-+...
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 3456778888877777665422 1112333344444555555555555555555432 1111222222222
Q ss_pred hhhHHHHHHHHHHhCCCchhh-HHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 003148 356 LLCGRMCHGYVLRNGLEGWDS-ICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPG 434 (844)
Q Consensus 356 ~~~a~~i~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (844)
+-.|.++-... ++..++ .-.+-.+-+...|+++.|..-|-+... .-..+.+-.....+.+|..+++.+..
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 22222222111 111111 112233344455666666665544322 12234455566667777777776666
Q ss_pred CCcc--ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhH
Q 003148 435 RDHI--SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATA 512 (844)
Q Consensus 435 ~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (844)
+++. -|..+...|+..|+++.|.++|-+.- .+.-.+..|.+.|.++.|..+-... .|.+.....|-+
T Consensus 761 qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIA 829 (1636)
T ss_pred hccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHH
Confidence 5433 35555666777777777777775531 2334555666777776665554332 233444555555
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 590 (844)
-..-.-+.|++.+|++++-.+..|+. .|..|-++|..++.+++.++ ..|+. .|-..+..-+...|+++
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChh
Confidence 55666778888888888877777764 36678888888887777664 34444 56666777788888888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCC-C---ChHHHHHHH------HHHHhcCCHHHH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVE-P---NDVIWGSLL------AACQKHQNVDIA 660 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p---~~~~~~~ll------~~~~~~g~~~~a 660 (844)
.|.+.|-+..+ |.+-+++|-.++.+++|..+-+.-+-. . -...|.--+ ..+.++|-++.|
T Consensus 900 aae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 900 AAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred HHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 88887765543 566788888889999998887765311 0 122343222 234456666666
Q ss_pred HHH------HHHHHh-----cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 661 AYA------AERITE-----LDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
... |+-+++ ....-+..++.++.-+-..|++++|.+-+-...+.
T Consensus 970 id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 542 222222 22334567888888889999999998877666554
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=3.3e-06 Score=90.69 Aligned_cols=547 Identities=14% Similarity=0.103 Sum_probs=317.4
Q ss_pred chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 003148 65 SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFV 144 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 144 (844)
+-..+++.+..+. +..|..+|- + .|. -..-|..|....+|++|+.+-+. .|.+.-...-.+-
T Consensus 534 ykvra~lail~kk-----fk~ae~ifl-----e---qn~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy 595 (1636)
T KOG3616|consen 534 YKVRAMLAILEKK-----FKEAEMIFL-----E---QNA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSY 595 (1636)
T ss_pred HHHHHHHHHHHhh-----hhHHHHHHH-----h---ccc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHH
Confidence 3344455544442 667777776 2 111 13456777777788888776433 2222111122334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh--hcCCCCcccHHHHHHHHHhCCCchH
Q 003148 145 LNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFD--EMSERNVVSWTSLICACARRDLPKE 222 (844)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~--~m~~~~~~~~~~li~~~~~~g~~~~ 222 (844)
++++...|.-+.|-++ ..+.--.-+-|..|.+.|....|.+.-. +-...|......+..++.+..-+++
T Consensus 596 ~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHh
Confidence 4555555554444332 1111122356889999999888876543 2223455556666677777777888
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 223 AVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANAL-MVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 223 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
|-++|+++.. +...+.++.+...+..|.++-... ++..++ .-...-+-+...|+++.|..-|-+..
T Consensus 667 agdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 667 AGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 8888887653 333444444444455555544332 222222 12233344455677777777664432
Q ss_pred CCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHH
Q 003148 302 DRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTM 381 (844)
Q Consensus 302 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 381 (844)
. .-..|.+-....++.+|+.+++.++..... ..-|..+...|+..|+++.|.++|... ..++--
T Consensus 734 ~-----~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da 797 (1636)
T KOG3616|consen 734 C-----LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA 797 (1636)
T ss_pred h-----HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence 1 122345667778899999999988876433 344677788899999999999887543 234678
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC--CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHH
Q 003148 382 IDMYMKCGKQEMACRIFDHMSNK--TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMEL 459 (844)
Q Consensus 382 i~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 459 (844)
|+||.+.|++++|.++-.+...| .++.|-+-..-.-++|++.+|++++-.+.+|+. -|..|-+.|..++.+++
T Consensus 798 i~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHH
Confidence 99999999999999999887765 455677777788899999999999988877764 46788899999999888
Q ss_pred HHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC--
Q 003148 460 FRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRD-- 537 (844)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-- 537 (844)
..+-.-.-+. .|-..+..-+...|++..|+.-|-... -+.+-++||-..+.+++|.++-+.--..|
T Consensus 873 v~k~h~d~l~---dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~ 940 (1636)
T KOG3616|consen 873 VEKHHGDHLH---DTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAE 940 (1636)
T ss_pred HHHhChhhhh---HHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence 8765322111 233344445556788887776654332 24567889999999999998876543222
Q ss_pred ---HhHHHHH------HHHHHhcCChHHHH-------------HHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 003148 538 ---VSAWTAA------IGAMAMEGNGEQAV-------------ELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 538 ---~~~~~~l------i~~~~~~g~~~~A~-------------~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
...|.-- +..+-++|..++|+ ++-+-..+.. .|. ...-+..-+...|++++|...
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskh 1017 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKH 1017 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHh
Confidence 2234322 22233344444433 3322222211 111 122233345678899999887
Q ss_pred HHHhHhhcCCCCCcchHHH-------------------HHHHHHhcCChHHHHHHHHhCCCCCCh--HHHHHHHHHHHhc
Q 003148 596 FRSMTDIHGVSPQIVHYGC-------------------MVDLLGRAGLLGEALDLIKSMPVEPND--VIWGSLLAACQKH 654 (844)
Q Consensus 596 ~~~m~~~~~~~p~~~~~~~-------------------li~~~~~~g~~~eA~~~~~~m~~~p~~--~~~~~ll~~~~~~ 654 (844)
+-+.++.. .-..+|.. -+.++.+..+++.|..+-+.- -||. .++..-..+....
T Consensus 1018 yveaikln---tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aiee 1092 (1636)
T KOG3616|consen 1018 YVEAIKLN---TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIEE 1092 (1636)
T ss_pred hHHHhhcc---cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhccccc
Confidence 77666511 11111111 123344444444444444332 1221 1233333333445
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
|++-.|+..+-++ ..|+ ...+-|...+.|.+|.++-+.
T Consensus 1093 ~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1093 GDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred cchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 6666665543222 2332 234557889999999887643
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=1.5e-07 Score=94.97 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=198.3
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
.|+|.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.++.++.+..-.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888876665444 3345555566677889999999998888875577778888888888899999999887
Q ss_pred HHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 530 FRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-------IVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 530 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
.+... .++.........+|.+.|++.+...++.+|.+.|+--|. .++..++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 76554 667888899999999999999999999999998876654 46788888888888877777888877
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
..+ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. . ..+-.+.+-++.+.-++..++.+...|++|..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 663 4455566678888999999999999998877 3222333 2 223346677888888899999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..|+..|.+.+.|.+|.+.++...+.+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 999999999999999999998766543
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=2e-07 Score=91.07 Aligned_cols=244 Identities=12% Similarity=0.138 Sum_probs=180.4
Q ss_pred cCChHHHHHHHHHHHhCCcccCh-hhHHhHHHHccccCchHHHHHHHHHHHHhC-CCCc--hhHHhHHhhhHHhcCCHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDR-VTMVGVASACGYLGALDLAKWIYAYIEKNG-IHCD--MQLATALVDMFARCGDPQR 525 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~li~~y~k~g~~~~ 525 (844)
+++.++|.++|-+|.+. .|.. .+-.++-+-+-+.|.++.|..+|+-+.+.. ...+ ....-.|..-|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46788888888888763 2222 233345556677888999999998776642 2222 2234457778999999999
Q ss_pred HHHHHHhcCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCcHHHHHHHHHH
Q 003148 526 AMQVFRRMEKRDV---SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 526 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
|+.+|..+.+.+. .....|+..|.+..++++|++.-+++...|-++..+ .|.-+........+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999886443 456678999999999999999999999977666553 366677777778899999999999
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND--VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..+ ..|+ +..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|.+.|+.++++..+.++.+..+..
T Consensus 206 Alq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 887 4455 444556789999999999999999988 455653 377888899999999999999999999988865
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHH
Q 003148 675 SGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
. .-..++..-....-.++|.....
T Consensus 283 ~-~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 283 D-AELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred c-HHHHHHHHHHHhhChHHHHHHHH
Confidence 4 34444444444444444544443
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=4e-06 Score=93.57 Aligned_cols=582 Identities=14% Similarity=0.035 Sum_probs=277.0
Q ss_pred hhhHHHHHHhhcCCCCc-chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHH
Q 003148 48 LKQPHCHILKQGLGHKP-SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLY 126 (844)
Q Consensus 48 ~~~~~~~~~~~g~~~~~-~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (844)
...+|..+....+.++. ..+..|=..|...-+ .-.|++.|+.+. +....+..+|......|++..+++.|..+.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAF--eLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAF--ELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHh--cCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34455555444444432 456666666665555 778888888776 666778888888889999999999888873
Q ss_pred HHHHhCC-CCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 003148 127 VELAGFG-ILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVV 205 (844)
Q Consensus 127 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 205 (844)
-..-+.. ...-...|..+--.+-..++...+..-|+...+.. +-|...|..|..+|.++|+...|.++|++...-++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 2222111 00011122233333445566666666666666655 456677788888888888888888888776654444
Q ss_pred cHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHH
Q 003148 206 SWTSLI---CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVD 282 (844)
Q Consensus 206 ~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 282 (844)
+|-.-- ..-+..|.+.+|++.+......- .++ ..+....|+.+.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-----s~e--------~~~q~gLaE~~ir~ak---------------- 679 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAF-----SLE--------RTGQNGLAESVIRDAK---------------- 679 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHH--------HHhhhhHHHHHHHHHH----------------
Confidence 333221 22345677777777766654320 000 0111111221111111
Q ss_pred HHHhcCC-------HHHHHHHHHhcCC----CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 003148 283 MYMKCGA-------VDTAKQLFGECKD----RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 283 ~y~~~g~-------~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
.+.-.|- ++++.+.|--... .+...|-.+- .|..+|-...- . .|+......+..-.-
T Consensus 680 d~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 680 DSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMHYLIILSKQLE 747 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHHHHHHHHHHHH
Confidence 1111111 2222222221111 1122222221 22233332220 0 222211111111122
Q ss_pred hcCCh---h---hHHHHHHHHHHhCCCchhhHHHHHHHHHHH----cC----CHHHHHHHHhhcCC---CCcchHHHHHH
Q 003148 352 QLGDL---L---CGRMCHGYVLRNGLEGWDSICNTMIDMYMK----CG----KQEMACRIFDHMSN---KTVVSWNSLIA 414 (844)
Q Consensus 352 ~~~~~---~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g----~~~~A~~~f~~m~~---~~~~~~~~li~ 414 (844)
..+.. + .|-+.+..-++ +..+...+..|..-|.+ +| +...|...+....+ .+...||.|.-
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV 825 (1238)
T ss_pred hcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 22222 1 11111111111 11123333333333332 22 23456666666543 67788888866
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCccccccccccccccCChHHHHHHHHHHHhCCccc-ChhhHHhHHHHccccCchHH
Q 003148 415 GLIKNGDVESAREVFSEMP---GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKV-DRVTMVGVASACGYLGALDL 490 (844)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~ 490 (844)
. ...|++.-|.-.|-+-. +.+..+|..+...+.++.+++.|...|...+.. .| |.+.+..........|+.-+
T Consensus 826 l-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred h-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHH
Confidence 6 66677777777665443 247789999999999999999999999888763 44 44444333322334455555
Q ss_pred HHHHHHHH--H--HhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-------------CCCHhHHHHHHHHHHhcCC
Q 003148 491 AKWIYAYI--E--KNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-------------KRDVSAWTAAIGAMAMEGN 553 (844)
Q Consensus 491 a~~i~~~~--~--~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~~g~ 553 (844)
...++..- . ..|--++..-+-+-.......|+.++-+..-+.+. ..+...|.......-+.+.
T Consensus 903 ~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~e 982 (1238)
T KOG1127|consen 903 RLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEE 982 (1238)
T ss_pred HHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHH
Confidence 55555442 1 12222222222222222334455444333333222 1233455555555555566
Q ss_pred hHHHHHHHHHHHHC-CCCCChhHHHH----HHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH--HhcCChH
Q 003148 554 GEQAVELFNEMLRQ-GIKPDSIVFVG----VLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL--GRAGLLG 626 (844)
Q Consensus 554 ~~~A~~l~~~m~~~-g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~ 626 (844)
+++|.++..+.+.- ..+-|..+|+. ....+...|.++.|..-+ +..|-.+--..+...+ .-.|+++
T Consensus 983 y~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~-------~~~~~evdEdi~gt~l~lFfkndf~ 1055 (1238)
T KOG1127|consen 983 YRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS-------WKEWMEVDEDIRGTDLTLFFKNDFF 1055 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh-------cccchhHHHHHhhhhHHHHHHhHHH
Confidence 66666655554320 01223333332 112233344444333322 2222211111111111 2256667
Q ss_pred HHHHHHHhC-C---CCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 627 EALDLIKSM-P---VEPNDVI-WGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 627 eA~~~~~~m-~---~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
++.+.|+++ . -..|.++ ...++......+.-+.|...+-+...+.|.+......|.-++.-.
T Consensus 1056 ~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1056 SSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHh
Confidence 777777666 1 1223222 233333334555556666666666666665555555555554433
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.99 E-value=7.4e-08 Score=97.04 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=132.2
Q ss_pred HHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 003148 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE 555 (844)
Q Consensus 479 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 555 (844)
...+...|+++.+...+..+.+.. +.+...+..+...|...|++++|.+.|++.. ..+...|..+...+...|+++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHH
Confidence 334444455555555555444432 2234556667777788888888888887665 335567777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
+|++.|++..+....|.. ..+..+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|.+.++
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888874333332 4566677778888899999999888877 3343 5567788888888999999988888
Q ss_pred hC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 634 SM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 634 ~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 194 RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 76 3333 445666666777788899998888877766543
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=5e-07 Score=89.07 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=88.1
Q ss_pred HHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHHhcCCc
Q 003148 180 INFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMV-CVISACAKLQNL 255 (844)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~ 255 (844)
...|.+.|++++|..++.-+.+ ++...|--|...+.--|.+.+|..+-... |+..... .++...-+.++-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 3455566777777776665432 34445555555555566666666554432 2222222 333334456666
Q ss_pred hHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHH-HHHHHcCChHHHHHHHHHHH
Q 003148 256 ELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIM-SNYVRLGLAREALAILDEML 332 (844)
Q Consensus 256 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~ 332 (844)
++....|+.+...- .-.-+|..+..-.-.+.+|++++.++.. |+....|.-+ -+|.+..-++-+.++++--+
T Consensus 138 k~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 66666666654321 2223444444444467888888888764 4445555533 46677777777777777666
Q ss_pred hcCCCCChhhHHHHHHHHh
Q 003148 333 LHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 333 ~~g~~p~~~t~~~ll~~~~ 351 (844)
+. .||+ |+..=|.+|.
T Consensus 213 ~q--~pdS-tiA~NLkacn 228 (557)
T KOG3785|consen 213 RQ--FPDS-TIAKNLKACN 228 (557)
T ss_pred Hh--CCCc-HHHHHHHHHH
Confidence 54 3443 4444455554
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.9e-07 Score=95.03 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccccccccccccccCChHHHHHHHHHHHhC--C-cccChhhHHhHH
Q 003148 406 VVSWNSLIAGLIKNGDVESAREVFSEMPGRD---HISWNTMLGGLTQENMFEEAMELFRVMLSE--R-IKVDRVTMVGVA 479 (844)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g-~~p~~~t~~~ll 479 (844)
..+|-++.--|...|+..+|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. | -.| +.-+-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlg 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLG 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHH
Confidence 4455555555555566666666665443332 347888888888888888888887776542 1 111 11112
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHH
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
--|.+.++++.|.+.+.++.... +.|+.+.+-+.-++.+.+.+. +|..
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~-------------------------------~A~~ 435 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP-------------------------------EALK 435 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH-------------------------------HHHH
Confidence 22344455555555555444332 334444444444444444444 4444
Q ss_pred HHHHHHHC----C-CCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHH
Q 003148 560 LFNEMLRQ----G-IKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLI 632 (844)
Q Consensus 560 l~~~m~~~----g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~ 632 (844)
+|+..++. + -++ -..+++.|..+|.+.+.+++|+..+++... ..| +..+|+++.-.|...|+++.|.+.|
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 44443310 0 011 223455555566666666666666666554 222 3555566666666666666666666
Q ss_pred HhC-CCCCChHHHHHHHH
Q 003148 633 KSM-PVEPNDVIWGSLLA 649 (844)
Q Consensus 633 ~~m-~~~p~~~~~~~ll~ 649 (844)
.+. .++||..+-..+++
T Consensus 513 hKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHhcCCccHHHHHHHH
Confidence 655 55665555444444
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.2e-06 Score=86.50 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=178.3
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhh----HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVT----MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLAT 511 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 511 (844)
|+.....+...+...|+..+|+..|++.+. +.|+.++ |..+| ...|+.+....+...+....-. ....|-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~~-ta~~wf 304 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKVKY-TASHWF 304 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhhhc-chhhhh
Confidence 444455555666666666666666666544 2333322 21222 3345555555544443322100 111111
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccC
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGG 587 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 587 (844)
.-........+++.|..+-++..+- ++..+-.-...+.+.|+.++|.-.|+..+. +.|.. ..|..|+..|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 1111223446777888877776643 344444445667888999999999999988 78765 78999999999999
Q ss_pred cHHHHHHHHHHhHhhcCCCCCcchHHHHH-HHHHh-cCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHH
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQIVHYGCMV-DLLGR-AGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYA 663 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 663 (844)
...||.-.-+...+..+ .+..+.+.+. +.+.- .---++|.+++++. .++|+-. ..+.+...|...|..+.++..
T Consensus 383 ~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99999887776665322 2233333331 22222 22357889998887 7778744 566777788899999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLRE 743 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 743 (844)
+++.+...|++ ..++.|++++.....+.+|...|...... +|+.+....-++.
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHH
Confidence 99999988876 68899999999999999999998776643 5666666666677
Q ss_pred HHHHHH
Q 003148 744 MNCRLR 749 (844)
Q Consensus 744 l~~~~~ 749 (844)
++++++
T Consensus 514 lEK~~~ 519 (564)
T KOG1174|consen 514 LEKSDD 519 (564)
T ss_pred HHhccC
Confidence 666655
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.93 E-value=1.6e-07 Score=101.73 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhc----C-CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIH----G-VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--------PVEPN 640 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~ 640 (844)
++..+...|.+.|++++|.++|+++++.. | ..+. ..+++.|...|.+.++.++|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 45556666666666666666666554421 1 1111 334556666677777777666666654 33455
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 641 D-VIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 641 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
. .+|..|...|...|++|.|+++.++++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 4889999999999999999999888874
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.92 E-value=1e-05 Score=86.62 Aligned_cols=462 Identities=14% Similarity=0.117 Sum_probs=256.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCC
Q 003148 142 PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRD 218 (844)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 218 (844)
..+++.| ..+.+..+....+.+++ +++....+.....-.+...|+-++|......-.. ++.++|..+.-.+-...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3334433 34556666666666666 3333333333222334556778888777665443 56688998888888888
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 219 LPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFG 298 (844)
Q Consensus 219 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 298 (844)
++++|+..|+.....+ ||.. .++.-|.-.-++.|+++.....-.
T Consensus 90 ~Y~eaiKcy~nAl~~~--~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE--KDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hHHHHHHHHHHHHhcC--CCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8999999998877642 3321 122222222222223332222222
Q ss_pred hcC---CCCceehHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCChhhHHHHHH------HHhhcCChhhHHHHHHHHHH
Q 003148 299 ECK---DRNLVLCNTIMSNYVRLGLAREALAILDEMLLHG-PRPDRVTMLSAVS------ASAQLGDLLCGRMCHGYVLR 368 (844)
Q Consensus 299 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~ 368 (844)
... ...-..|.....++.-.|+...|..++++..+.. -.|+...+.-... .....|.++.+.+......+
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 221 1244678888888888888888888888887654 2455544433222 22345555555544433222
Q ss_pred hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCcchHHH-HHHHHHhcCCHHHHH-HHHhhCCCC---Cccccc
Q 003148 369 NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--KTVVSWNS-LIAGLIKNGDVESAR-EVFSEMPGR---DHISWN 441 (844)
Q Consensus 369 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~---~~~~~~ 441 (844)
. +.......-.-.+.+.+.+++++|..++..+.. ||-.-|.- +..++.+-.+.-++. .+|....+. ....-.
T Consensus 214 ~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 214 Q-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred H-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 1 222233344567788889999999999998876 44444444 344443343433443 555555431 100000
Q ss_pred cccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC
Q 003148 442 TMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG 521 (844)
Q Consensus 442 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 521 (844)
.=++......-.+..-+.+..+.+.|+.+-...+.++.. . .+... +.-.++..|...-
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~---p~k~~----------------~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---D---PEKVA----------------FLEKLVTSYQHSL 350 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---c---hhHhH----------------HHHHHHHHHHhhc
Confidence 001111112223334445566677776664333333321 1 11100 1112222222111
Q ss_pred CHHHHHHHHHh--cCCCCHhHHHH--HHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHH
Q 003148 522 DPQRAMQVFRR--MEKRDVSAWTA--AIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 522 ~~~~A~~~~~~--~~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.-..+....+. ...|....|.. ++..|-..|+++.|+.+++..+. ..|..+ -|..-...+.|.|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 10000000000 22456666766 56778889999999999999988 788874 5666678999999999999999
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCC--CC----hHHHHHHH--HHHHhcCCHHHHHHHHH
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVE--PN----DVIWGSLL--AACQKHQNVDIAAYAAE 665 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~--p~----~~~~~~ll--~~~~~~g~~~~a~~~~~ 665 (844)
+...+ =-.||...-+--+.-..|+.+.++|.++.... +.. .| .-.|-.+- .+|.+.|++.+|++-+.
T Consensus 429 ~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 429 DEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 99887 12355444445666778999999999987665 210 01 22565553 35777788877776554
Q ss_pred HHH
Q 003148 666 RIT 668 (844)
Q Consensus 666 ~~~ 668 (844)
.+.
T Consensus 507 ~i~ 509 (700)
T KOG1156|consen 507 EIE 509 (700)
T ss_pred hHH
Confidence 443
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.7e-08 Score=95.93 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=141.3
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhc
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARC 520 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 520 (844)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+- ..|.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLs-----------------------------------kvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLS-----------------------------------KVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHH-----------------------------------HHHHHh
Confidence 34566666666666666666665543 23233444444 445555
Q ss_pred CCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHH
Q 003148 521 GDPQRAMQVFRRMEK--R-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 521 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.....|..+|.+..+ | |+....-+...+...++.++|++++++..+ ..|+. .....+...|.-.++++-|..++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHH
Confidence 555555555554441 2 222223344445555566666666666655 34433 34444555555566666666666
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
+++.+ .|+. +.+.|+.+.-.+.-.++++-++.-|++. .-.|+ ..+|..|.....-.||+..|.+.++-++..+
T Consensus 348 RRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 66655 3332 2344555555555556666666666555 22343 4589888888888999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++...++.|+-+-.+.|+.++|+.++...++.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999999999888764
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=5.2e-07 Score=93.92 Aligned_cols=221 Identities=13% Similarity=-0.009 Sum_probs=159.6
Q ss_pred cccccCChHHHHHHHHHHHhCC-cccCh--hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCC
Q 003148 446 GLTQENMFEEAMELFRVMLSER-IKVDR--VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD 522 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 522 (844)
.....+..+.++.-+.+++... ..|+. ..+...-..+...|+.+.|...+...++.. +.+...++.+...|...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3444567788888888887642 23332 345555566778899999999999888865 3467889999999999999
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 523 PQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 523 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
+++|...|+...+ .+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|.+.|++.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999998863 3567888899999999999999999999998 6787653222233345678899999999776
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHH--HHHHHhC-C----CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEA--LDLIKSM-P----VEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA--~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.. ...|+... ..++.. ..|++.++ .+.+.+. . ..| ....|..+...+...|+.++|+..++++++.+
T Consensus 192 ~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 54 23343222 233333 34555443 3333322 1 122 23579999999999999999999999999999
Q ss_pred CCC
Q 003148 672 PEK 674 (844)
Q Consensus 672 p~~ 674 (844)
|.+
T Consensus 267 ~~~ 269 (296)
T PRK11189 267 VYN 269 (296)
T ss_pred Cch
Confidence 744
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=6.1e-08 Score=102.15 Aligned_cols=219 Identities=18% Similarity=0.171 Sum_probs=164.1
Q ss_pred cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 003148 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
.+.|++..|.-.|+..++.. +.+...|--|.-.-...++-..|+..+++..+ .|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777665 33666777777777777777777777777663 355666777777888888888888
Q ss_pred HHHHHHHCCCCCChhHHHHH--------HHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 003148 560 LFNEMLRQGIKPDSIVFVGV--------LTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDL 631 (844)
Q Consensus 560 l~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 631 (844)
.++.-+.. .|...-...- -....+........++|-.+....+.++|..++.+|.-+|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88777652 2211100000 0122233344555666666665566668888999999999999999999999
Q ss_pred HHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 632 IKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 632 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|+.+ .++| |...||-|...+....+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 7788 56799999999999999999999999999999999999999999999999999999988766543
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=6.4e-05 Score=74.61 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHH-HHHHHhcCChHHHHHHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAA-IGAMAMEGNGEQAVELFN 562 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~l~~ 562 (844)
.++...-.+..+...-...|.+.+| +..+++..|+..+|+++|-.+..+ |-.+|.++ ...|.++++++.|-.++-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4455555555555554555666665 778889999999999999888754 55677665 457888999988866654
Q ss_pred HHHHCCCCCChhHH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHH
Q 003148 563 EMLRQGIKPDSIVF-VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613 (844)
Q Consensus 563 ~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 613 (844)
++ .-..+..+. ..+.+-|.+.+.+--|-+.|+.+.. ..|+++.|.
T Consensus 453 k~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 453 KT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWE 498 (557)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccC
Confidence 43 323344444 3445578899998888888888876 778888774
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=2.2e-05 Score=87.87 Aligned_cols=519 Identities=12% Similarity=0.029 Sum_probs=277.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchH
Q 003148 168 GFDRD-VFVENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKP-NSVTM 242 (844)
Q Consensus 168 g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~ 242 (844)
.+.++ ...|..|...|...-+...|.+.|+..-+ -|..+|.....-|++..+++.|..+.-.--+. .| -...+
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~ 563 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKE 563 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHh
Confidence 33344 35788899999988899999999998765 46678999999999999999999983222221 11 11112
Q ss_pred HH--HHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHH---HHHHHHH
Q 003148 243 VC--VISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNT---IMSNYVR 317 (844)
Q Consensus 243 ~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~---li~~~~~ 317 (844)
+. .--.+...++...+..-++...+.. +.|...+..|..+|.++|++..|.++|.+...-+..+|-. ....-+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 22 2222345566666777777666654 4478899999999999999999999998877654444332 2233456
Q ss_pred cCChHHHHHHHHHHHhcC------CCCChhhHHHHHHHHhhcCCh-------hhHHHHHHHHHHhCCCchhhHHHHHHHH
Q 003148 318 LGLAREALAILDEMLLHG------PRPDRVTMLSAVSASAQLGDL-------LCGRMCHGYVLRNGLEGWDSICNTMIDM 384 (844)
Q Consensus 318 ~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 384 (844)
.|.+.+|++.+......- ..--..++......+...|-. +...+.+.-++......+...+-.+-
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-- 720 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-- 720 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--
Confidence 788999988887765421 111111222222222222222 22222222222222111111111111
Q ss_pred HHHcCCHHHHHHHHhhcC--------------------C---------------------CCcchHHHHHHHHHh----c
Q 003148 385 YMKCGKQEMACRIFDHMS--------------------N---------------------KTVVSWNSLIAGLIK----N 419 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~--------------------~---------------------~~~~~~~~li~~~~~----~ 419 (844)
+|..+|-... . .+..+|..++..|.+ .
T Consensus 721 --------dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 721 --------DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred --------HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 1111222111 0 123444444433332 1
Q ss_pred ----CCHHHHHHHHhhCCC---CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHH
Q 003148 420 ----GDVESAREVFSEMPG---RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAK 492 (844)
Q Consensus 420 ----g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 492 (844)
.+...|...+..... .+...||.|.-. ..-|.+.-|...|-+-... -+.+..+|..+--.|....+++.|.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhh
Confidence 112234444433222 345556555433 3334444444444333221 1223445555555555566666666
Q ss_pred HHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhc-----C---CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003148 493 WIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRM-----E---KRDVSAWTAAIGAMAMEGNGEQAVELFNEM 564 (844)
Q Consensus 493 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 564 (844)
+.+.......+ .+..-|--..-.-...|+.-++..+|..- . -++..-|-.-..-..++|+.++-+...+.+
T Consensus 871 ~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 66665544321 12222211111122345555555555431 1 123444444444455666665544433332
Q ss_pred HHC--------CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH----HHHHHHhcCChHHHHHH
Q 003148 565 LRQ--------GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC----MVDLLGRAGLLGEALDL 631 (844)
Q Consensus 565 ~~~--------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~eA~~~ 631 (844)
-.. +-.|+. ..|...+....+.+.+.+|.+...+.+.-...+-+...|+. ...++...|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 123444 67777777788888888887777766543233444445553 34455667788877777
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH---HHHHHHHHcCCchHHHHHHHHHHh
Q 003148 632 IKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV---LLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 632 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+...+..-|..+-.+-++. .-.|+++++.+.|++++.+-.++....+ .++......+.-+.|....-..+.
T Consensus 1030 ~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 7666554455544444444 4457899999999999987655443223 334445566777777766655544
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.1e-05 Score=79.17 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=82.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--h
Q 003148 110 IRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENC--LINFYG--E 185 (844)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~ 185 (844)
++-+..+|.+++|.....++...+ +-|...+..-+-+..+.+.++.|..+.. +.+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 456677889999999998888765 4455567777788888888888874432 2221 112222 244555 6
Q ss_pred cCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 003148 186 CGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGI 235 (844)
Q Consensus 186 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (844)
.+..++|...++....-+..+-..=...+.+.|++++|+++|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 78899999988855554544555555677888999999999999877654
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1e-07 Score=92.95 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 410 NSLIAGLIKNGDVESAREVFSEMPG--RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
+.|...|.+.|.+.+|.+.|+...+ +-+.+|-.+-..|.+..+++.|+.+|.+-.+. .|-.+|+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---------- 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---------- 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----------
Confidence 5688999999999999999997765 46778888999999999999999999887653 676666632
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEM 564 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 564 (844)
-+...+...++.++|.++++...+ .++.+...+..+|--.+++|-|+..++++
T Consensus 295 ------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 ------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 122223334556666666666553 24444555566677777888888888888
Q ss_pred HHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 003148 565 LRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN- 640 (844)
Q Consensus 565 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~- 640 (844)
++.|+. +...|..+.-.|...+++|-++.-|++... .--.|+ ..+|-.+.......|++.-|..-|+-. .-.|+
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 887743 445666777777777888888887777766 222343 456777777777778888888877765 33343
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
...++.|.-.-.+.|++++|...+..+....|+-...
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 4467777666677888888888888887777764433
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=0.00023 Score=78.15 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=55.7
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 003148 308 CNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMK 387 (844)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 387 (844)
|.-...-+-..|+.+.|+.+|....+ |-++.+..+-.|+.+.|-++-..- .|....--|..+|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhh
Confidence 33333444456888888888877654 445566666778888877765442 244556678899999
Q ss_pred cCCHHHHHHHHhhcC
Q 003148 388 CGKQEMACRIFDHMS 402 (844)
Q Consensus 388 ~g~~~~A~~~f~~m~ 402 (844)
.|++.+|...|-+..
T Consensus 980 ~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988764
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.4e-05 Score=87.33 Aligned_cols=421 Identities=14% Similarity=0.113 Sum_probs=239.7
Q ss_pred CChhHHHHHHH--HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHc-C--------CCCCc
Q 003148 171 RDVFVENCLIN--FYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEE-G--------IKPNS 239 (844)
Q Consensus 171 ~~~~~~~~Li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~pd~ 239 (844)
-|..+..++++ .|..-|++|.|.+-.+-+. +.+.|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666665 4777888888877766554 3456888888888888877776666666432 1 1122
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-ceehHHHHHHHHHc
Q 003148 240 VTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRN-LVLCNTIMSNYVRL 318 (844)
Q Consensus 240 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~ 318 (844)
.+=..+.-.....|.+++|+.++...++.. .|=..|-..|.+++|.++-+.-..-. -.+|..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 232333333456788888888888877643 34456777888888888754322111 12344444445556
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHH
Q 003148 319 GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIF 398 (844)
Q Consensus 319 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 398 (844)
++.+.|++.|++-... -...+ -+|.- +.. ++-.++.+ ..|...|.--..-.-..|+++.|+.+|
T Consensus 872 ~Di~~AleyyEK~~~h----afev~-rmL~e-----~p~---~~e~Yv~~---~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVH----AFEVF-RMLKE-----YPK---QIEQYVRR---KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCCh----HHHHH-HHHHh-----ChH---HHHHHHHh---ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 7788888877754211 00000 01100 000 11111111 123344444444455678899999988
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhH
Q 003148 399 DHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGV 478 (844)
Q Consensus 399 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 478 (844)
....+ |-+++...|-.|+.++|.++-++- .|......+...|-..|++.+|+.+|-+.+ +|...
T Consensus 936 ~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnA 999 (1416)
T KOG3617|consen 936 SSAKD-----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNA 999 (1416)
T ss_pred HHhhh-----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHH
Confidence 88765 777788888889999988888765 345555667888888999999999988764 34445
Q ss_pred HHHccccCchH---------------HHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---------
Q 003148 479 ASACGYLGALD---------------LAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--------- 534 (844)
Q Consensus 479 l~a~~~~~~~~---------------~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------- 534 (844)
|+.|-..+.-+ .+-.+|+ +.|... .--+..|-|.|.+.+|+++--+-.
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 55443332221 1122222 222111 123446777888777776532222
Q ss_pred -----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-
Q 003148 535 -----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ- 608 (844)
Q Consensus 535 -----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 608 (844)
..|+...+--..-+..+.++++|..++-...+ |...+..|...|. .--.++-+.|.-...-.|+
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccH
Confidence 12444555555566677778888877766654 3445555554432 1112222222211111122
Q ss_pred ---cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 003148 609 ---IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 609 ---~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
......+.+.+.++|.+..|-+-|.+++-+ . ..+.++.+.||.++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l----~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--L----SAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--H----HHHHHHHhcCCcce
Confidence 234556677788888888888888777533 1 12334455666543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=6.3e-05 Score=72.97 Aligned_cols=380 Identities=15% Similarity=0.089 Sum_probs=214.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q 003148 278 NALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLG 354 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 354 (844)
++.+.-+.+..++++|++++..-.++ +....+.+..+|....++..|-+.+.++-.. .|...-|..
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl--------- 82 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL--------- 82 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH---------
Confidence 44444455666677777776655543 3344556666677777777777777766543 232222210
Q ss_pred ChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CcchHHHHHHH--HHhcCCHHHHHHHHhh
Q 003148 355 DLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNK-TVVSWNSLIAG--LIKNGDVESAREVFSE 431 (844)
Q Consensus 355 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~ 431 (844)
--...+-+.+.+.+|.++...|.+. +...-..-+.+ .-..+++..+..+.++
T Consensus 83 -------------------------Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 83 -------------------------YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred -------------------------HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh
Confidence 0112234456667777777776652 22111111222 2345677777777777
Q ss_pred CCC-CCccccccccccccccCChHHHHHHHHHHHh-CCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchh-
Q 003148 432 MPG-RDHISWNTMLGGLTQENMFEEAMELFRVMLS-ERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQ- 508 (844)
Q Consensus 432 m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~- 508 (844)
.+. .+..+.+.......+.|+++.|++-|+...+ .|..| ...|+..+.-+ +.++...|....+++++.|+...+.
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 774 4555556666666788888888888888776 44444 45565555433 4567777777777777766532111
Q ss_pred --------------------HHhHHh-------hhHHhcCCHHHHHHHHHhcCCC-----CHhHHHHHHHHHHhcCChHH
Q 003148 509 --------------------LATALV-------DMFARCGDPQRAMQVFRRMEKR-----DVSAWTAAIGAMAMEGNGEQ 556 (844)
Q Consensus 509 --------------------~~~~li-------~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~ 556 (844)
.-++++ ..+.+.|+.+.|.+.+..|+.+ |+++...+.-.- ..+++.+
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~ 294 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTE 294 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccc
Confidence 122333 3456889999999999999944 677766553322 2455656
Q ss_pred HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC-CCcchHHHHHHHHHh-cCChHHHHHHHH
Q 003148 557 AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS-PQIVHYGCMVDLLGR-AGLLGEALDLIK 633 (844)
Q Consensus 557 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~-~g~~~eA~~~~~ 633 (844)
..+-+.-+++ +.|=. .||..++-.|++..-++-|-.++.+-.. .-.+ .+...|+ |++.+.- .-..++|++-++
T Consensus 295 g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 295 GFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred cHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHH
Confidence 6665666666 56644 7999999999999999888887754221 0000 1122222 3344433 335566666555
Q ss_pred hCCCCCChHHHHHHH-HH-HHhcCCHHH----HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 634 SMPVEPNDVIWGSLL-AA-CQKHQNVDI----AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 634 ~m~~~p~~~~~~~ll-~~-~~~~g~~~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+.-.- ..-.+.+. .. -.++.+-++ +.+-+++.+++-- .....-+++|.+..++.-+.++|+.-.+-
T Consensus 371 ~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 371 GLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 441000 00111111 00 112222222 3334455554321 24456778899999999999999776653
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=6.3e-07 Score=91.85 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=105.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc---hHHHHHHHHHhcC
Q 003148 547 AMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV---HYGCMVDLLGRAG 623 (844)
Q Consensus 547 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g 623 (844)
.+...|++++|++++++- .+.......+..+.+.+++|.|.+.++.|.+ +..|.. ...+.+..+.-.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCch
Confidence 345567888887777542 2334555566677788888888888888876 444422 1223333333344
Q ss_pred ChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 003148 624 LLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW-TNVARVRLQ 700 (844)
Q Consensus 624 ~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 700 (844)
.+.+|.-+|+++ ...+++.+.+.+..+....|++++|+..++++++.+|+++.+...++-+....|+. +.+.+.+..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 789999999998 44567788888888889999999999999999999999999999999888999998 667788888
Q ss_pred HHhC
Q 003148 701 MKEQ 704 (844)
Q Consensus 701 m~~~ 704 (844)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7764
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.65 E-value=6.1e-06 Score=77.45 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+-|++.+. +.|+. ...|....-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence 333455556666666555555522 234555555556666666666666666555 45544 344555555555556
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
+++|...|+.....-...-...+|..++-+-.++|+.+.|.+.+++. ...|+ ..+.-.+.......|++-.|...+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 66666666655542111112345555555555666666666666554 33332 33444455555555566666655555
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
...-.+-......+.+.+-...|+-+.+.++=..+.
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555444444444444444555555555555544443
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=5e-07 Score=82.65 Aligned_cols=122 Identities=8% Similarity=-0.009 Sum_probs=95.5
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-
Q 003148 558 VELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM- 635 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m- 635 (844)
..+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..+..++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666666 66765 44556677788888888888888876 5554 667788888888888888888888887
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 636 PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 636 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5555 56678888888888999999999999999999999888888777654
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.63 E-value=3.3e-05 Score=76.39 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHhhCCCCCcccccc---ccccccccCCh
Q 003148 380 TMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSL---IAGLIKNGDVESAREVFSEMPGRDHISWNT---MLGGLTQENMF 453 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~ 453 (844)
.|...+...|++.+|+.-|....+-|+..|.++ ...|...|+...|..-+....+.-+..+.+ -...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 455555666777778777777777666666655 345666666666655555544322111111 12345677888
Q ss_pred HHHHHHHHHHHhCCcccChh----------------hHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhH
Q 003148 454 EEAMELFRVMLSERIKVDRV----------------TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF 517 (844)
Q Consensus 454 ~~A~~l~~~m~~~g~~p~~~----------------t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 517 (844)
++|..-|+..++.. |+.- .....+..+...|+...+......+++.. +.|...+..-.++|
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888887776642 2111 11222333344566666666666666543 44666777777778
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 003148 518 ARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 573 (844)
...|++..|+.-++... ..+....--+-..+.+-|+.+.++...++.++ +.||.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 88888887776665443 44556666666667777888888888887777 77776
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=9.6e-05 Score=81.10 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVD 617 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 617 (844)
.|......+...++.++|...+.+... +.|-. ..|......+...|..++|.+.|..... +.|+ +....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 355555566666666666666666555 44544 3344444556667777777777777665 6666 566777788
Q ss_pred HHHhcCChHHHHH--HHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 618 LLGRAGLLGEALD--LIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 618 ~~~~~g~~~eA~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
++.+.|+..-|.. ++..+ .+.| +...|..|.....+.|+.+.|-+.|.-++++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888886655555 66666 6666 5779999999999999999999999999999988774
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=2.4e-06 Score=86.23 Aligned_cols=178 Identities=13% Similarity=0.055 Sum_probs=111.0
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-CH---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK--R-DV---SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VF 576 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 576 (844)
...+-.+...|.+.|++++|...|+++.. | +. ..|..+..++.+.|++++|+..++++++ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 44455556666677777777777766552 2 11 3456666677777777777777777776 445432 34
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 577 VGVLTACSHG--------GLVNQGWHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 577 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
..+..++... |+.++|.+.|+.+.+ ..|+.. .+..+.. .+....... .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~----~~~~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKR----MDYLRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHH----HHHHHHHHH-----------HHHHHH
Confidence 4444444443 566667777776665 234321 1111111 110110000 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+...|+.++|...++++++..|+++ ..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999877654 68889999999999999999999888764
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=7.3e-05 Score=80.36 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
-.++..|-+.|+++.|+++++.+ +-.|..+ .|..-...+...|++++|...++++.+++-.|-.....-++-..++.+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 35566677777777777777776 4445443 343444556667777777777777777776554333345555567777
Q ss_pred chHHHHHHHHHHhCC
Q 003148 691 WTNVARVRLQMKEQG 705 (844)
Q Consensus 691 ~~~a~~~~~~m~~~~ 705 (844)
.++|.++..+..+.|
T Consensus 455 i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREG 469 (700)
T ss_pred cHHHHHHHHHhhhcc
Confidence 777777777766655
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9.9e-05 Score=77.86 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=124.7
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHh----------HHHHHHHH
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVS----------AWTAAIGA 547 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~----------~~~~li~~ 547 (844)
+.++.-+..+++.+.+-+....... .+..-++.....|...|...+....-....+..-. +..-+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444555666666666555544 45555555666666666666555554443322211 12223446
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCChH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV-HYGCMVDLLGRAGLLG 626 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~ 626 (844)
|.+.++++.|+..|.+.+..-..||..+ +....+++....+...- +.|+.. -.-.-...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHH
Confidence 6667778888888877666444443322 12223333333333222 334321 1112255666777777
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..-+-++....+|++|.+.+....+.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777776 4445 45566666666677777777777777778888877777777777777777788777777666553
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.56 E-value=1.4e-05 Score=88.01 Aligned_cols=242 Identities=13% Similarity=0.118 Sum_probs=109.9
Q ss_pred HHHHHHcCCHHHHHHHHhhcCC--CCcc-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--c-ccccccccc-----cc
Q 003148 382 IDMYMKCGKQEMACRIFDHMSN--KTVV-SWNSLIAGLIKNGDVESAREVFSEMPGRDHI--S-WNTMLGGLT-----QE 450 (844)
Q Consensus 382 i~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~-~~~li~~~~-----~~ 450 (844)
...+...|++++|+..++.-.. .|.. ........+.+.|+.++|..++..+..+|+. . |..+..+.. ..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3456778888888888877554 3333 3344566677777777777777777664433 2 222222221 11
Q ss_pred CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCch-HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGAL-DLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
...+...++|+++...- |.......+.-.+.....+ ..+........+.|++ .+++.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455566666665432 3333332222222221122 2233344444555543 2444455555544333333333
Q ss_pred HHhcC------------------CCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 530 FRRME------------------KRDVSAW--TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 530 ~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+.... .|....| .-+...|...|++++|++++++.++ ..|.. ..|..-...+.+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 33221 0111122 2223334444555555555554444 34443 234444444445555
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
+++|.+.++...+ +.+. ...-+-.+.-+.|+|+.++|.+.+.
T Consensus 244 ~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 244 LKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555554444443 2221 2222333344444444444444443
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.54 E-value=2.9e-05 Score=85.66 Aligned_cols=248 Identities=13% Similarity=0.108 Sum_probs=145.0
Q ss_pred HHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCcchH-HHHHHHHHhc-----
Q 003148 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--KTVVSW-NSLIAGLIKN----- 419 (844)
Q Consensus 348 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~----- 419 (844)
..+...|+.+.|.+.+....+. +.....+.......|.+.|+.++|..++..+.+ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3456678888887777553332 344556667778888888888888888888775 333333 3333333111
Q ss_pred CCHHHHHHHHhhCCCCCccc--cccccccccccCChH-HHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHH
Q 003148 420 GDVESAREVFSEMPGRDHIS--WNTMLGGLTQENMFE-EAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYA 496 (844)
Q Consensus 420 g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 496 (844)
.+.+...++++++....+.+ ..-+.-.+.....+. .+...+..+...|+++ +|+.+-.-|......+...++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 24566677777665533221 111222222222333 3444556666777654 34444444444444444444444
Q ss_pred HHHHh----C----------CCCch--hHHhHHhhhHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHHH
Q 003148 497 YIEKN----G----------IHCDM--QLATALVDMFARCGDPQRAMQVFRRMEK--RD-VSAWTAAIGAMAMEGNGEQA 557 (844)
Q Consensus 497 ~~~~~----g----------~~~~~--~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 557 (844)
..... + -+|+. .++.-+...|-..|+.++|.+++++..+ |. +..|..-...+.+.|+.++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 43322 1 12333 2334556777788888888888887663 32 44666677778888888888
Q ss_pred HHHHHHHHHCCCCCChhHHH-HHHHHHhccCcHHHHHHHHHHhHh
Q 003148 558 VELFNEMLRQGIKPDSIVFV-GVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.+.++...+ +.+...-.| -....+.+.|++++|.+++....+
T Consensus 248 a~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 248 AEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 888888887 555443333 344456688888888888877765
No 101
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=1.9e-05 Score=82.13 Aligned_cols=216 Identities=11% Similarity=0.082 Sum_probs=153.0
Q ss_pred ccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC-CHHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG-DPQRAM 527 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~ 527 (844)
-.+++.+|...|+.....+ +..+.|..+...+++... .+..+++.-..++.+.| ++++++
T Consensus 32 y~~~~~~a~~~~ra~l~~~------------------e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASD------------------ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred eCHHHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHH
Confidence 3456667777766655432 344566666666665432 23344554455555666 578899
Q ss_pred HHHHhcC---CCCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 528 QVFRRME---KRDVSAWTAAIGAMAMEGNG--EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 528 ~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..++++. .++...|+...-.+.+.|+. ++++.+++++++ ..|+. .+|.....++.+.|+++++++.++++++
T Consensus 93 ~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9888776 44566788766666666653 678999999998 67765 7888888888899999999999999988
Q ss_pred hcCCCCC-cchHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc----CCHHHHHHHHHHH
Q 003148 602 IHGVSPQ-IVHYGCMVDLLGRA---GLL----GEALDLIKSM-PVEP-NDVIWGSLLAACQKH----QNVDIAAYAAERI 667 (844)
Q Consensus 602 ~~~~~p~-~~~~~~li~~~~~~---g~~----~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~ 667 (844)
..|+ ...|+....++.+. |.. ++++++.+++ ...| |...|+-+.+.+... ++..+|...+.++
T Consensus 171 ---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 171 ---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred ---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 3343 56677666666554 323 4677777555 5566 567999999888774 3456788999999
Q ss_pred HhcCCCCCchHHHHHHHHHHc
Q 003148 668 TELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 668 ~~~~p~~~~~~~~l~~~~~~~ 688 (844)
++.+|+++-+...|+++|.+.
T Consensus 248 ~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcccCCcHHHHHHHHHHHHhh
Confidence 999999988999999999864
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00017 Score=76.05 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=118.0
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK--RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV 589 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 589 (844)
+...|.+.++.+.|...|.+... ++.. ...+....++++...+...- +.|+. .-...-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 45578888999999999987542 1211 11223445666666665555 55655 2233346678899999
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
.+|...+.++++ ..|+ ...|+...-+|.+.|.+.+|++=.+.. .+.|+.. .|.--..++....+++.|.+.+++
T Consensus 375 ~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 3355 788999999999999999998877766 5566543 555555666677899999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~ 687 (844)
.++.+|++..+...+...+..
T Consensus 452 ale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHH
Confidence 999999988777776665554
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=2.9e-06 Score=77.58 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=93.3
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 594 HLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.++++..+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555555 5565 3556788999999999999999998 5666 57799999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
|+++..+..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987653
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.0024 Score=78.55 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=88.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchH-----HH
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQG--IKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHY-----GC 614 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~ 614 (844)
+...+...|++++|...+++..... ..|.. ..+..+.......|+.++|.+.++.+............+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 3444555577777776666654421 11211 233334445566777777777777665421111111111 01
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-C-CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSMPV-E-PND----VIWGSLLAACQKHQNVDIAAYAAERITELDP------EKSGVHVLLS 682 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~ 682 (844)
....+...|+.+.|.+.+..... . ... ..+..+..++...|+.++|...++++++... .....+..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 12334556777777777766521 1 111 1133455566677888888888887776421 1223566777
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 003148 683 NIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 683 ~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|...|+.++|.+.+.+..+.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888777664
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=5.8e-06 Score=80.01 Aligned_cols=146 Identities=8% Similarity=0.098 Sum_probs=107.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG 623 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 623 (844)
+..|...|+++.+....+.+.. |. ..+...+..+++...++...+ ..|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3456777777665443322211 11 012235666777777777766 3444 778888888899999
Q ss_pred ChHHHHHHHHhC-CCCC-ChHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 624 LLGEALDLIKSM-PVEP-NDVIWGSLLAAC-QKHQN--VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 624 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
++++|.+.+++. ...| +..+|..+..++ ...|+ .++|..+++++++.+|+++.++..|+..+.+.|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887 5666 456777777764 66676 589999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 003148 699 LQMKEQG 705 (844)
Q Consensus 699 ~~m~~~~ 705 (844)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9988753
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.6e-07 Score=61.05 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=28.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 003148 168 GFDRDVFVENCLINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 168 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.8e-07 Score=60.77 Aligned_cols=33 Identities=42% Similarity=0.654 Sum_probs=28.7
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 269 GMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 269 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888999999999999999988884
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.45 E-value=6.9e-05 Score=81.06 Aligned_cols=255 Identities=11% Similarity=0.005 Sum_probs=150.6
Q ss_pred ccccCChHHHHHHHHHHHhCCcccChh-hHHh---HHHHccccCchHHHHHHHHHHHHhCCCC-chhHHhHHhhhHHhcC
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDRV-TMVG---VASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFARCG 521 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g 521 (844)
+...|++++|.+.+++..+. .|+.. .+.. ........+..+.+.+.... .....| .......+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 44566777777777776654 34322 2221 11111223444444444433 111222 2334445566788899
Q ss_pred CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--hHHHHHHHHHhccCcHHHHHHH
Q 003148 522 DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI-KPDS--IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
++++|...+++.. ..+...+..+...|...|++++|+.++++...... .|+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998776 33466778888888999999999999998887321 1222 2355677788889999999999
Q ss_pred HHHhHhhcCCCCCcchH-H--HHHHHHHhcCChHHHHHH---HHhC-CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 596 FRSMTDIHGVSPQIVHY-G--CMVDLLGRAGLLGEALDL---IKSM-PVEPN---DVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 596 ~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
+++........+..... + .+...+...|....+... .... +..|+ .........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99876411111111111 1 233334444533332222 2111 11111 1222345556677889999999888
Q ss_pred HHHhcCC---------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 666 RITELDP---------EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 666 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.+....- .........+.++...|++++|.+.+......+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8765221 123456778888999999999999998887653
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0012 Score=69.86 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHhC-CcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC-chhHHhHHhhhHHhcCCHHHHHHHH
Q 003148 453 FEEAMELFRVMLSE-RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC-DMQLATALVDMFARCGDPQRAMQVF 530 (844)
Q Consensus 453 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~ 530 (844)
.+.....++++... .+.|+ .+|...++..-+...++.|+.+|..+.+.+..+ ++.++++++.-|+ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 34445555555443 23343 456667777777788889999999988887766 8888999998776 57788888998
Q ss_pred HhcCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcC-
Q 003148 531 RRMEK--RD-VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHG- 604 (844)
Q Consensus 531 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 604 (844)
+.-.+ +| ..--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86552 23 333455666777778888888889888888777776 5788888888888888888888777766554
Q ss_pred -CCCCcchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 605 -VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 605 -~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
.++...+-..+++.|.-.+....-..-++.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4444455566677777666554444444433
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=6.4e-06 Score=84.48 Aligned_cols=154 Identities=14% Similarity=0.204 Sum_probs=101.7
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh----ccCcHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACS----HGGLVN 590 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 590 (844)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...|. +...+..++. ..+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 4456677777777776654 4455555567777788888888888888876 44443 3333444333 234678
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNV-DIAAYAAERI 667 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 667 (844)
+|..+|+++.+. ..+++...+.+.-+....|++++|.+++++. ...| |..++..++..+...|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888887763 3456677777888888888888888888775 4445 445666677766777766 6677888888
Q ss_pred HhcCCCCC
Q 003148 668 TELDPEKS 675 (844)
Q Consensus 668 ~~~~p~~~ 675 (844)
....|+++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88888764
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.0019 Score=79.53 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=53.6
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh-hHHHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDV-------SAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPDS-IVFVGVLTA 582 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a 582 (844)
..+...|+.+.|...+.....+.. ..+..+..++...|++++|..++++.... |..++. .+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334557778888777766553211 11334556677778888888888776652 222222 345555566
Q ss_pred HhccCcHHHHHHHHHHhHh
Q 003148 583 CSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~ 601 (844)
+...|+.++|...+.+..+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777766
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=1.5e-05 Score=92.23 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=167.8
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRMEKR--------DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV 575 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 575 (844)
+.+...|-..+......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+ .---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 334566777777888899999999999987622 346899999998889988999999999998 3333467
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLLAAC 651 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~ 651 (844)
|..|+..|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-+.|.++++++ ..-|- .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 89999999999999999999999999777 55678999999999999999999999887 33343 33445555566
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.++|+.+.|..+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999988765
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=1.4e-05 Score=71.77 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
.+..-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..+.++..++|+++..+..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444445677788999999999999987 5566 56689999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 003148 687 SAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLR 749 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 749 (844)
..|+.++|++-|+...... + .+|+..++..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 9999999999998877642 1 26777777776666655543
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=1.9e-05 Score=76.50 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=116.7
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 592 (844)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++.++ ..|+. ..|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456778888777655443322211 012235677888888888888 66766 6788888899999999999
Q ss_pred HHHHHHhHhhcCCCCC-cchHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQ-IVHYGCMVDL-LGRAGL--LGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
...|++..+ +.|+ ...+..+..+ |.+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887 5665 7778888886 467787 59999999998 6666 566888888889999999999999999
Q ss_pred HHhcCCCCCchHHHH
Q 003148 667 ITELDPEKSGVHVLL 681 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l 681 (844)
++++.|.+..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999988776554433
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=9.9e-06 Score=85.87 Aligned_cols=214 Identities=14% Similarity=0.174 Sum_probs=160.9
Q ss_pred HHHHcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHHHH
Q 003148 384 MYMKCGKQEMACRIFDHMSNK---TVVSWNSLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEEAM 457 (844)
Q Consensus 384 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~ 457 (844)
-+.+.|++.+|.-.|+..... +...|.-|.......++-..|...+++..+- |....-+|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788899998888887653 4568888988888888888888888776653 5556666777788899999999
Q ss_pred HHHHHHHhCCcc-----c---ChhhHHhHHHHccccCchHHHHHHH-HHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHH
Q 003148 458 ELFRVMLSERIK-----V---DRVTMVGVASACGYLGALDLAKWIY-AYIEKNGIHCDMQLATALVDMFARCGDPQRAMQ 528 (844)
Q Consensus 458 ~l~~~m~~~g~~-----p---~~~t~~~ll~a~~~~~~~~~a~~i~-~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 528 (844)
..++.-+....+ + +..+-.. ........+....++| +.....+..+|+.+...|.-.|--.|+++.|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653210 0 1000000 1122223344445554 445556666888889999999999999999999
Q ss_pred HHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 529 VFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 529 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.|+... ..|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|..+|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999877 34788999999999999999999999999999 99998 4566777789999999999998877655
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00014 Score=76.21 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT-ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
..|.-....+...|+.++|+..++.++. -.||...|..+.. .+...++.++|.+.++++.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 3344444455677999999999999988 6888877666554 78899999999999999988 6677 55666788
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 617 DLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
++|.+.|+..+|..++++. ..+-|+..|..|..+|...|+..++..+. +..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHH
Confidence 9999999999999999987 33447889999999999999988776653 4567889999999
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
.......+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99999888763
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=3e-05 Score=88.83 Aligned_cols=139 Identities=8% Similarity=-0.009 Sum_probs=117.5
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHH
Q 003148 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYG 613 (844)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 613 (844)
.++..+-.|.....+.|++++|+.+++...+ +.||. .....+..++.+.+.+++|....++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577788888889999999999999999999 89998 5677788899999999999999999887 5676 66777
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.+..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|..+|+++++...+....|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888999999999999999998 34454 678999999999999999999999999987665544443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.29 E-value=2.7e-05 Score=78.57 Aligned_cols=180 Identities=16% Similarity=0.087 Sum_probs=126.0
Q ss_pred hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-CHh---HHHH
Q 003148 472 RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGDPQRAMQVFRRMEK--R-DVS---AWTA 543 (844)
Q Consensus 472 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~---~~~~ 543 (844)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.+ | +.. .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3455666677888999999999999987765321 124567788999999999999999998863 2 222 4555
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH
Q 003148 544 AIGAMAME--------GNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC 614 (844)
Q Consensus 544 li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 614 (844)
+..++.+. |+.++|++.|+++.+ ..|+..- ...+..... .. .... .....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~------~~~~---------~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LR------NRLA---------GKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HH------HHHH---------HHHHH
Confidence 56666654 788999999999998 6777632 221111100 00 0000 11235
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CC---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PV---EP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+.+.|.+.|++++|...+++. .. .| ....|..+..++...|+.++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677889999999999998887 22 33 245888899999999999999998888776555
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=1e-05 Score=87.96 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=91.9
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHh
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACS 584 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 584 (844)
|...|..+.|......-++.|.++++....+--..|+.+ ...+++++++.+.|+.-.+ +.|-. .+|.....+..
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAAL 530 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHH
Confidence 333444444444333444555555544432211112111 1225677777777776666 55544 56666666666
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCC-CChHHHHHHHHHHHhcCCHHHHH
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVE-PNDVIWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 661 (844)
+.++++.|.+.|..-.. ..|+ .+.|+.+-.+|.+.|+..+|...++++ ... -+..+|-...-....-|+.++|.
T Consensus 531 qlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 77777777777776665 5565 566777777777777777777776666 222 23446666666666777777777
Q ss_pred HHHHHHHhcC
Q 003148 662 YAAERITELD 671 (844)
Q Consensus 662 ~~~~~~~~~~ 671 (844)
+++.+++++.
T Consensus 608 ~A~~rll~~~ 617 (777)
T KOG1128|consen 608 KAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhh
Confidence 7777777643
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.25 E-value=0.0019 Score=69.87 Aligned_cols=195 Identities=9% Similarity=-0.092 Sum_probs=96.8
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCCcccH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH---HH
Q 003148 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGI-LPDKFTF-PFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVEN---CL 179 (844)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L 179 (844)
.|..+...+...|+++++...+.+...... .++.... ......+...|+++.+..+++..++.. +.|...++ .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444455555666665554444433211 1111111 111122345566777777777666653 33333333 12
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcc---cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCch
Q 003148 180 INFYGECGDIVDGRRVFDEMSERNVV---SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLE 256 (844)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 256 (844)
.......+..+.+.+.++.....+.. .+..+...+...|++++|...+++..+.. +.+...+..+-..+...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 22222344555555555542221221 22233345666777777777777776643 223334455555566666666
Q ss_pred HHHHHHHHHHHhCC-Ccch--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 257 LGDRVCAYIDELGM-KANA--LMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 257 ~a~~~~~~~~~~g~-~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
+|...+....+... .++. ..+..+...+...|+.++|..+|++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666655432 1222 234456666666777777777776654
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=4.6e-05 Score=73.34 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=100.0
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHH
Q 003148 569 IKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGS 646 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ 646 (844)
..|+......+-.++...|+-++...+...... ....|......++....+.|++.+|...|++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455443225555667777777777777766543 12233444555778888888888888888887 44457778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+..+|-+.|+.++|...+.+++++.|+++.++..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888887776543
No 122
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=9.9e-05 Score=76.80 Aligned_cols=183 Identities=11% Similarity=0.145 Sum_probs=135.7
Q ss_pred hhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc-
Q 003148 515 DMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL- 588 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 588 (844)
..+.+.+..++|..+...+.+ .+...|+.-...+...| +.++++..++++++ ..|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 334556778888888887763 35567877766777777 67999999999998 56665 456655555556665
Q ss_pred -HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc---CC----H
Q 003148 589 -VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---QN----V 657 (844)
Q Consensus 589 -~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~ 657 (844)
.+++..+++++.+ ..|+ ...|+....++.+.|++++|++.++++ ...| |...|+.....+... |. .
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3678888988887 5565 678888888999999999999999998 4444 667888877666554 22 2
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHc----CCchHHHHHHHHHH
Q 003148 658 DIAAYAAERITELDPEKSGVHVLLSNIYASA----GKWTNVARVRLQMK 702 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 702 (844)
+.+.....++++++|+|.++|..+..++... ++..+|.++.....
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 4677788899999999999999999999773 34455666665543
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=9e-06 Score=73.91 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
..|+ ......++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4444 345566777788888888888888876 4445 566788888888888999999999999999999998999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 003148 682 SNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999877764
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00011 Score=70.79 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=87.7
Q ss_pred HhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++... ..|+. .+++.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 4444455555555555555433 23444555566666667777777777776666 44433 566666666667777
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCC-C-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVE-P-NDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
.++|..-|.+..+ +.|+ ...++.|.-.|.-.|+++.|..++...-.. + |..+-..|.-+....|++++|+.+..
T Consensus 150 ~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777766666666 3333 445556666666666666666666665221 1 45555666666666666666666654
Q ss_pred H
Q 003148 666 R 666 (844)
Q Consensus 666 ~ 666 (844)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00017 Score=82.81 Aligned_cols=143 Identities=12% Similarity=0.070 Sum_probs=118.2
Q ss_pred CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HH
Q 003148 502 GIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KR-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FV 577 (844)
Q Consensus 502 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 577 (844)
.+..+...+-.|.+.....|..++|+.+++... .| +...+..+...+.+.+++++|+..+++.+. ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 345567788888899999999999999999887 34 466788899999999999999999999999 7898854 55
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHH
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLA 649 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~ 649 (844)
.+..++.+.|.+++|..+|+++.. -.|+ ...+..+..++-+.|+.++|...|++. ...|....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 666678899999999999999987 3344 778889999999999999999999998 34455555555443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.00012 Score=84.96 Aligned_cols=215 Identities=16% Similarity=0.176 Sum_probs=152.8
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-ccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN--------KTVVSWNSLIAGLIKNGDVESAREVFSEMPGR-D-HISWNTM 443 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~l 443 (844)
+...|-..|......++++.|++++++... .-...|.++++.-...|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344556666666677777777777776543 12246777777777777777777777766552 2 3456677
Q ss_pred cccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCC-CchhHHhHHhhhHHhcCC
Q 003148 444 LGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIH-CDMQLATALVDMFARCGD 522 (844)
Q Consensus 444 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~ 522 (844)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+...-+.|+.++.++.+.-.. -.+.+..-.+++-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77888888888888888888764 2344556667777777777777888888777665322 245566667788889999
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLV 589 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 589 (844)
.+.++.+|+... .+-...|+..|..-.++|+.+.+..+|++.+..++.|-. ..|.-.|.-=...|+-
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 999999999877 446789999999999999999999999999998888865 3444444433333443
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=7.6e-05 Score=81.40 Aligned_cols=194 Identities=14% Similarity=0.203 Sum_probs=106.4
Q ss_pred CCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003148 503 IHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA 582 (844)
Q Consensus 503 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 582 (844)
++|-...-..+.+.+.++|-...|..+|++. ..|-..|-.|...|+..+|.++..+-++ -+||..-|..++..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444445555666677777777777777654 3466666677777777777777666666 45666666666666
Q ss_pred HhccCcHHHHHHHHHHhHhhc-------------------------CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-
Q 003148 583 CSHGGLVNQGWHLFRSMTDIH-------------------------GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM- 635 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~-------------------------~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m- 635 (844)
.-..-.+++|+++++...... .+.|- ..+|-.+.-+..+.+++..|.+.|...
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 655555666666655443310 01121 233334444444455555555555544
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 636 PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 636 ~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...||. ..||++-.+|.+.|+-.+|...+.++++-+-++...+.+..-+..+.|.|++|.+.+.++.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 444432 35555555555555555555555555555544444444444444555555555555555544
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5.3e-06 Score=54.85 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 003148 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNS 239 (844)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 239 (844)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00011 Score=77.98 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=103.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
..+++..+...+++++|.++|+++.+ ..|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~---~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE---RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh---cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 45667777788999999999999987 2354 5556888888889999999999887 3344 56667766777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.++.+.|+.+++++.++.|++...|..|+.+|.+.|+|++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.07 E-value=0.0012 Score=65.73 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=144.9
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccC
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA---IGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGG 587 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g 587 (844)
-+...+...|.+.+|+.-|....+-|+..|.++ ...|...|+...|+.-+.+.++ ++||-.. -..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 355556667889999999998888888877776 4568888999999999999999 8998743 333444678899
Q ss_pred cHHHHHHHHHHhHhhcCCCCC----cchHHH------------HHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHH
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQ----IVHYGC------------MVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLA 649 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~----~~~~~~------------li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~ 649 (844)
.+++|..-|+.+.+ -.|+ .+++.- .+.-+.-.|+...|++++..+ .+.|-.. .+..-..
T Consensus 121 ele~A~~DF~~vl~---~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQ---HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHh---cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 99999999999887 2332 222221 223355678999999999987 7777444 4444445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...|+...|+.-++.+-++..++...+.-++.++...|+.++++...+...+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 6677899999999999999999999999999999999999999998877666553
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.00034 Score=73.35 Aligned_cols=124 Identities=21% Similarity=0.197 Sum_probs=108.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHh
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQK 653 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~ 653 (844)
....-.+...|..++|+..++.+.+ -.|+ +..+...++.+.+.++.++|.+.++++ ...|+ ...|-.+..++.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3344456678999999999999887 4565 556677889999999999999999998 67787 6788899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.|+..+|+..++..+.-+|+++..|..|+.+|...|+-.++..-+..+-.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877654
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.04 E-value=0.034 Score=62.92 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=112.8
Q ss_pred cHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 105 MYNSLIRGY--SCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 105 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
.|...+.++ .+.|+.++|..+++.....+.. |..|+..+-..|...+..+++..++++..+.. |+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHH
Confidence 455566654 4678888888887776655444 67778888888888888888888888887653 556677777778
Q ss_pred HHhcCChH----HHHHHHhhcCCCCcccHHHHHHHHHhC-CCch---------HHHHHHHHHHHcCCCC-CcchHHHHHH
Q 003148 183 YGECGDIV----DGRRVFDEMSERNVVSWTSLICACARR-DLPK---------EAVYLFFEMVEEGIKP-NSVTMVCVIS 247 (844)
Q Consensus 183 y~~~g~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~---------~A~~l~~~m~~~g~~p-d~~t~~~ll~ 247 (844)
|++-+++. .|.+++...+++--.-|+.+ +.+.+. ...+ -|...++.+.+.+-+. +..-..--+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 88776654 46667776666555556543 333322 1122 2333444444432111 1111111122
Q ss_pred HHHhcCCchHHHHHHH-HHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003148 248 ACAKLQNLELGDRVCA-YIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD 302 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 302 (844)
.+...|.+++|..++. ...+.-...+...-+--++++.+.+++.+-.++-.++..
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 2334566777777763 233332334555556667777777777666655555443
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=9e-06 Score=53.69 Aligned_cols=35 Identities=40% Similarity=0.719 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 573 (844)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00011 Score=66.63 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 003148 560 LFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-P 636 (844)
Q Consensus 560 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 636 (844)
+|++.++ ..|+. .....+...+...|++++|.+.|+.+.+ ..| +...+..+...|.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 66665 4456666778888999999999988877 334 4677788888999999999999988877 4
Q ss_pred CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 637 VEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 637 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 455 46678888888899999999999999999999988653
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00014 Score=71.45 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=71.6
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 659 (844)
..+.+++++|+..|..+++ +.|. ..-|..-..+|.+.|.+++|.+-.+.. .+.|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4456677777777777776 5655 444555667777777777777777666 56665 3478888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
|++.|+++++++|++..+...|..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887655555443
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=1.8e-05 Score=51.78 Aligned_cols=34 Identities=44% Similarity=0.753 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 003148 204 VVSWTSLICACARRDLPKEAVYLFFEMVEEGIKP 237 (844)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 237 (844)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999888887
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00025 Score=75.23 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=104.4
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG 586 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 586 (844)
....+|+..+...++++.|..+|+++.+.+...+..|+..+...++-.+|++++++.++ ..|+. ..+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 33445666777788999999999999977777777788888888999999999999987 45654 4455555668889
Q ss_pred CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003148 587 GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEP 639 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 639 (844)
++++.|..+.+++.+ ..|+ ..+|..|+..|...|++++|+..++.+|+.|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999988 6777 6699999999999999999999999997655
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.83 E-value=0.0014 Score=76.07 Aligned_cols=218 Identities=11% Similarity=0.120 Sum_probs=143.7
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHH-ccccCchHHHHHHHHHHHHhCCCCchhHHhHHh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASA-CGYLGALDLAKWIYAYIEKNGIHCDMQLATALV 514 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 514 (844)
+...|..|+..|...+++++|.++.++..+ ..|+...+..++.. +.+.+....+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 445677888888889999999999886655 36666554433322 2222222222222 344
Q ss_pred hhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHH
Q 003148 515 DMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 591 (844)
+...+..++.....+...|. ..+......+..+|.+.|+.++|...++++++ +.|+. ...+.+...++.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHH
Confidence 44444444433333333333 12334667788889999999999999999999 56766 6788888888888 9999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC---------------------ChHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP---------------------NDVIWGSLLA 649 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p---------------------~~~~~~~ll~ 649 (844)
|.+++.++... |....++.++.+++.++ ...| -..+|--+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99999888762 33333444555544444 2222 2334444556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
-|...++++++..+++.+++.+|.|..+..-++..|. +++.+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 6778889999999999999999999888888887775 44444
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.0002 Score=76.46 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=49.8
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
.+...|++++|+++++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344555556666555555 3334 23455555555556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHh
Q 003148 696 RVRLQMKE 703 (844)
Q Consensus 696 ~~~~~m~~ 703 (844)
+.++...+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66655554
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.5e-05 Score=50.43 Aligned_cols=33 Identities=39% Similarity=0.694 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP 571 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 571 (844)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00028 Score=58.89 Aligned_cols=92 Identities=23% Similarity=0.229 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|+.++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999988876 44443 4677777778888899999999999999999988888899999999999
Q ss_pred CchHHHHHHHHHHh
Q 003148 690 KWTNVARVRLQMKE 703 (844)
Q Consensus 690 ~~~~a~~~~~~m~~ 703 (844)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998877654
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0011 Score=74.01 Aligned_cols=140 Identities=16% Similarity=0.060 Sum_probs=70.1
Q ss_pred CCCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcc--------CcHHHHHHHHHHh
Q 003148 534 EKRDVSAWTAAIGAMAM--EG---NGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHG--------GLVNQGWHLFRSM 599 (844)
Q Consensus 534 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m 599 (844)
...|...|...+.|... .+ ..++|+.+|++.++ ..||.. .+..+..++... +.+.++.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567777777776443 22 36689999999999 788873 444333322111 1122222222222
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 600 TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 600 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
........+...|..+.-.....|++++|...++++ .+.|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 220011112234444444444445555555555554 4445544555555555555555555555555555555554
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0056 Score=58.80 Aligned_cols=163 Identities=14% Similarity=0.183 Sum_probs=112.8
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA---IGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
++-+..-+|+.+.|...++.+..+-+-|.... ..-+-..|++++|+++++.+++.. |+. +++.--+.+.-..|.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCC
Confidence 33344456777777777776552212121111 112455788999999999998854 544 777766666677777
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC---CHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ---NVDIAAYA 663 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~ 663 (844)
.-+|++-+....+ .+..|.+.|.-+.++|...|+++.|.-.++++ -..| ++..+..+...+.-.| |++.+.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788888877776 35677889999999999999999999888888 4455 4555566666544433 77888999
Q ss_pred HHHHHhcCCCCCchHH
Q 003148 664 AERITELDPEKSGVHV 679 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~ 679 (844)
+++++++.|.+...+.
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999996654444
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.70 E-value=8.6e-05 Score=58.14 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG-KWTNVARVRLQMKE 703 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 703 (844)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988765
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.00078 Score=61.83 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=60.2
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 659 (844)
.++.+.+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+.. ...||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555553222110 122223445555666666666666655 112332 233344555566667777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22223344566777777777777777777754
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=3.8e-05 Score=62.91 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHhC-CCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 003148 622 AGLLGEALDLIKSM-PVEP---NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARV 697 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 697 (844)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777766 2223 445666677778888888888888887 777777766777778888888888888888
Q ss_pred HHH
Q 003148 698 RLQ 700 (844)
Q Consensus 698 ~~~ 700 (844)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.69 E-value=0.027 Score=57.43 Aligned_cols=249 Identities=20% Similarity=0.196 Sum_probs=164.0
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
.|++++|.+-|+.|... ...-..-+..+.-..-+.|..+.++++-+..-..-. .-.....+.++..+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHH
Confidence 46677777777777542 000112233333344567787888777766654432 1245667888889999999999999
Q ss_pred HHhcC-----CCCHh--HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHH
Q 003148 530 FRRME-----KRDVS--AWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 530 ~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
.+.-. ++|+. .-..|+.+-+. .-+...|...-.+..+ +.||-+ .-..-..++.+.|++.+|-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98654 44443 23334443322 3456677777777666 889874 445556689999999999999999
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 599 MTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 599 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+-+ .+|.+..+. ...+.|.|+. +..-+++. .++|| .....+...+-...|++..|....+.+..+.|.
T Consensus 289 aWK---~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 289 AWK---AEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHh---cCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 987 566665543 2334566642 22222222 45665 445666677778889999999999999999997
Q ss_pred CCchHHHHHHHHHHc-CCchHHHHHHHHHHhCCCccCCcc
Q 003148 674 KSGVHVLLSNIYASA-GKWTNVARVRLQMKEQGIRKLPGS 712 (844)
Q Consensus 674 ~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~ 712 (844)
. ++|.+|+++-... |+-.+++.++.+..+. ..+|.+
T Consensus 362 e-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 362 E-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred h-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 6 6899999997554 9999888887766553 244543
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0034 Score=60.68 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred HhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH-H
Q 003148 620 GRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA-R 696 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~ 696 (844)
...++..+|.-+|++| ...|+..+.+....+|...|++++|+.+++.++..+|+++.+...+.-.--..|+-.++. +
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 3345677788888888 367888888888888889999999999999999999999988888877777888876654 3
Q ss_pred HHHHHH
Q 003148 697 VRLQMK 702 (844)
Q Consensus 697 ~~~~m~ 702 (844)
.....+
T Consensus 264 ~l~QLk 269 (299)
T KOG3081|consen 264 NLSQLK 269 (299)
T ss_pred HHHHHH
Confidence 344443
No 149
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.001 Score=64.87 Aligned_cols=196 Identities=14% Similarity=0.071 Sum_probs=143.4
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH-HHHHHhcc
Q 003148 511 TALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG-VLTACSHG 586 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~ 586 (844)
++.+.-+.+..++++|++++..-.+ ++......|...|-...++..|-..++++-. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 3444445566778888887765543 3455667777788888888888888988887 6777655433 23456677
Q ss_pred CcHHHHHHHHHHhHhhcCCCCCcch--HHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 003148 587 GLVNQGWHLFRSMTDIHGVSPQIVH--YGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAA 664 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 664 (844)
+.+.+|+++...|.. .|.... ...-.......|++..+..++++.+-+.+..+.+...-...+.|++|.|.+-|
T Consensus 92 ~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 888888888877754 122111 11112234567888889999999875556666666655567899999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcc
Q 003148 665 ERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGS 712 (844)
Q Consensus 665 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 712 (844)
+.+++..--+|..-..++-++.+.|+++.|.+....+.++|++..|..
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 999998877777778888899999999999999999999999887743
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.1e-05 Score=48.39 Aligned_cols=31 Identities=39% Similarity=0.507 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 003148 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGI 235 (844)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 235 (844)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00026 Score=69.64 Aligned_cols=89 Identities=22% Similarity=0.194 Sum_probs=78.9
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 616 VDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
.+-+.+.+++++|+..+.++ .+.| |.+.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35567889999999999998 7777 556666677789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003148 694 VARVRLQMKEQ 704 (844)
Q Consensus 694 a~~~~~~m~~~ 704 (844)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999877653
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=97.64 E-value=0.00089 Score=60.54 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=78.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 691 (844)
....-+...|++++|..+|+-+ -..| |..-|..|...|...+++++|...+..+..++++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444566799999999999877 3333 5667888988899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 003148 692 TNVARVRLQMKE 703 (844)
Q Consensus 692 ~~a~~~~~~m~~ 703 (844)
++|+..|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988776
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0019 Score=59.32 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCM 615 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 615 (844)
..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.+ ....|. ....-.|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 3344444 367777777777777773 3433 2233344566777888888888887776 222222 1233446
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
..++...|++++|+..++..+-.+ ....+......+...|+.++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677777888888888887653222 34455666667788888888888877653
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.00054 Score=60.41 Aligned_cols=93 Identities=16% Similarity=0.056 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK---SGVHVLLSN 683 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 683 (844)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|++++|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555666666666666555 22232 2244445555666666666666666666666654 334556666
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 003148 684 IYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 684 ~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0054 Score=58.88 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=124.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL-TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL 619 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 619 (844)
+..++-+....|+.+.|...++++... .|.+.-...+- .-+-..|++++|.++++...++. +.|..+|---+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 334455666789999999999998884 37663322222 23456789999999999998832 34466777777777
Q ss_pred HhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC---chHH
Q 003148 620 GRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK---WTNV 694 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a 694 (844)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+|+++-+.|.++-.+..+++++...|- .+-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788877888777665 4556899999999999999999999999999999999999999999999877764 4456
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
++++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 67777766543
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.22 Score=56.70 Aligned_cols=159 Identities=12% Similarity=0.062 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 540 AWTAAIGAMAMEGNGE---QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
+-|.|+..+.+.++.. +|+-+++.-+. ..|.. .+-..++..|+-.|-+..|.+.|..+-- ..+.-|..-|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-H
Confidence 3466778888877755 45555555554 34433 4556677788888888888888887754 34555532221 2
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHHcC
Q 003148 616 VDLLGRAGLLGEALDLIKSM-PV-EPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK----SGVHVLLSNIYASAG 689 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 689 (844)
...+...|++..|...++.. .+ .-+..----++.--.++|.+..-.++..---.+.-.. ..+-....+.....+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666666665544 10 0000001112233345666665544322111121111 112224556667778
Q ss_pred CchHHHHHHHHHH
Q 003148 690 KWTNVARVRLQMK 702 (844)
Q Consensus 690 ~~~~a~~~~~~m~ 702 (844)
+.++-.+.+..|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8887777777776
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.61 E-value=0.011 Score=68.99 Aligned_cols=172 Identities=10% Similarity=0.104 Sum_probs=121.5
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccccccccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN--KTV-VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQE 450 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 450 (844)
+...+..|+..|...+++++|..+.+...+ |+. ..|-.+...+.+.++.+++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 345567788888888888888888876554 333 3444444466666665554333 344444555
Q ss_pred CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVF 530 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 530 (844)
.++.-...+...|... .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5564444444555542 2344567778888889999999999999999888 66888899999999998 999999988
Q ss_pred HhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH
Q 003148 531 RRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV 575 (844)
Q Consensus 531 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 575 (844)
.+.. ..|...+++.++.+++.++.+ ..|+.+.
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~~d~d 204 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNSDDFD 204 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHh--cCcccch
Confidence 7653 347777788889999998888 6666543
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=8.4e-05 Score=47.35 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGI 569 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 569 (844)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.001 Score=58.60 Aligned_cols=102 Identities=11% Similarity=0.010 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLA 649 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 649 (844)
+..+...+...|++++|.+.|+.+.+.+.-.+. ...+..+..++.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455556666666666665542211111 234445666677777777777777665 22333 345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
++...|+.++|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7788888888888888888888877543
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00097 Score=68.19 Aligned_cols=162 Identities=9% Similarity=0.050 Sum_probs=119.2
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcch-----
Q 003148 539 SAWTAAI-GAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVH----- 611 (844)
Q Consensus 539 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----- 611 (844)
.+|.-+- ..+...|++++|...--..++ +.+... ....-..++...++.+.|...|++..+ +.|+-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHh
Confidence 4444442 345667899999888777776 444442 222222245567888999999988776 5555221
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 612 --------YGCMVDLLGRAGLLGEALDLIKSM-PVEPN-----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 612 --------~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+.--.+...+.|++.+|.+.+.+. .+.|+ ...|.....+..+.|+.++|+.-.+++++++|.-...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 222235567899999999999987 55554 4455555666778999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 678 HVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 678 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
|..-++.|...++|++|.+-+++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998887653
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.00082 Score=71.78 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=61.4
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 659 (844)
+...|++++|++.|+++.+ ..|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3344555555555555554 3333 344555556666666666666666665 4444 34466666667777777777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
|+..++++++++|+++.....+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777777777777776666655543
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.52 E-value=0.00022 Score=54.96 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888888888888877653
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0018 Score=61.53 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=84.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD--SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYG 613 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 613 (844)
....+..+...+...|++++|+..|++.++....|. ...+..+...+.+.|++++|..++++..+ ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566777777778888888888888876433322 24566677777778888888888877776 3443 44555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 614 CMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666666655544333221 012577888999999999887 5555555555554
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0007 Score=64.01 Aligned_cols=94 Identities=14% Similarity=-0.084 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777888888888888877 33333 3478888889999999999999999999999999888888898
Q ss_pred HHH-------HcCCchHHHHHHHHHH
Q 003148 684 IYA-------SAGKWTNVARVRLQMK 702 (844)
Q Consensus 684 ~~~-------~~g~~~~a~~~~~~m~ 702 (844)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887766665543
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.00098 Score=63.28 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
.+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666666677766666655 22222 346777778888889999999999999999998888888888888
Q ss_pred HHcCC
Q 003148 686 ASAGK 690 (844)
Q Consensus 686 ~~~g~ 690 (844)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.012 Score=57.06 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCC
Q 003148 558 VELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPV 637 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 637 (844)
-++.+.+.......|.+....-...|.+.|++++|....... -+.+....=+..+.|..+++-|.+.+++|.-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345556665545555455555556799999999999988652 2344555556778899999999999999943
Q ss_pred CCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 638 EPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 638 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
--+..+.+.|..++.+ .+.+..|.-+|+++-+.-|..+......+.++...|+|++|..+.+...++.
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3466677777777654 3467889999999999777777788889999999999999999999887753
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.35 E-value=0.0006 Score=52.54 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999988 56674 56888899999999999999999999999999874
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00045 Score=53.80 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=44.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788889999999999999998888889999999999999999888776653
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.27 E-value=0.39 Score=51.62 Aligned_cols=210 Identities=12% Similarity=0.095 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC---CHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 003148 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFARCG---DPQRAMQVFRRME----KRDVSAWTAAIGAMAMEGNGEQAVELF 561 (844)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 561 (844)
+++..+++..+..-...+..+|.++.+.=-..- ..+.....+++.. ..-..+|-.++..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554443444555554443211111 1333333444333 222346777888777888889999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 003148 562 NEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PV 637 (844)
Q Consensus 562 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~ 637 (844)
.+..+.+..+-. ....+++. |.-.++..-|.++|+.-.+.+|-.| .--.+.++-+.+.++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999999988844 44555554 4456789999999998877565444 33456788899999999999999998 24
Q ss_pred CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 638 EPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS----GVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 638 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
.|| ..+|..++.--..-|+++...++-++....-|.+- ..-..+.+.|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 35999999999999999999998888776555211 12345556677777776555555444
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.26 E-value=0.011 Score=55.83 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD--SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGC 614 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 614 (844)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|+.++|+..+++..+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44567777777888888888888888877322222 13677777788888888888888887776 3444 344455
Q ss_pred HHHHHH
Q 003148 615 MVDLLG 620 (844)
Q Consensus 615 li~~~~ 620 (844)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0058 Score=62.93 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA-CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998532 2233445544444 4446777779999999998544 45667888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+.+.|+.+.|..+|++. ..-|.. .+|..++.--.++|+++....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4999999999999999999999999999988754
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.24 E-value=0.0025 Score=52.87 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
|..+...+...|++++|+..+++..+ ..|+. ..+..+...+...|++++|.++++...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555556666666666666555 33333 3344444444444555555555544443
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.002 Score=64.10 Aligned_cols=102 Identities=15% Similarity=0.028 Sum_probs=86.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh-cC--CHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 606 SPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK-HQ--NVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
+-|.+-|-.|...|.+.|+.++|..-|.+. .+.| +...+..+..++.. .| ...++..++++++.++|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 344889999999999999999999999988 4555 56677777776543 22 5678999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
|+-.+...|++.+|...++.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987543
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.00025 Score=46.00 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.16 E-value=0.092 Score=57.04 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCC
Q 003148 141 FPFVLNACTKSSAFGEGVQV--HGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRD 218 (844)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 218 (844)
|+..-++|.+..++.--+-+ ++.+.+.|-.|+... +...++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433322 455666776677654 33456677889999988864 67
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 219 LPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFG 298 (844)
Q Consensus 219 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 298 (844)
....|+++|..|+-- -...-+...|..++-+.+...-.+- ..|+---.+-..++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 777888888777531 1112233333333333222211110 011111123345555666666666553
Q ss_pred hcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHH
Q 003148 299 ECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSIC 378 (844)
Q Consensus 299 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 378 (844)
..+|-.+-++++-+++-. .+..++..+-.-+.+...+..|.++|..+-..
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 233434444444443322 13334444444444555666666666655332
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHH
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAME 458 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 458 (844)
.+++++....+++++|..+-++.++--...|-.-.+-++...++++|.+.| .+.|+..+|.+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf------------------hkAGr~~EA~~ 838 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF------------------HKAGRQREAVQ 838 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH------------------HHhcchHHHHH
Confidence 467778888888888888888887743344455556666777777776654 45577778888
Q ss_pred HHHHHHhC
Q 003148 459 LFRVMLSE 466 (844)
Q Consensus 459 l~~~m~~~ 466 (844)
+++++...
T Consensus 839 vLeQLtnn 846 (1081)
T KOG1538|consen 839 VLEQLTNN 846 (1081)
T ss_pred HHHHhhhh
Confidence 87776543
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0012 Score=52.21 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 649 AACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 649 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..+.+.+++++|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788899999999999999999999999999999999999999999998887653
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.11 E-value=0.0099 Score=66.40 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=98.3
Q ss_pred CCCChhHHHHHHHHHhc--c---CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------CChHHHHHHHHh
Q 003148 569 IKPDSIVFVGVLTACSH--G---GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA--------GLLGEALDLIKS 634 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~~~~~ 634 (844)
...|...|...+.+... . +..++|..+|+++.+ ..|+ ...|..+..+|... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45566788888887543 2 347799999999998 7888 45555554444322 234455555555
Q ss_pred C---C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M---P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
. + ...+..++.++.-.....|+.++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3 2 223556777776667778999999999999999999 46799999999999999999999998887654
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.11 E-value=0.0078 Score=54.34 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=35.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR 621 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 621 (844)
+..-+.+.|++++|..+|+-+.. +.|.. .-|..|...|-..|++++|+..|..... +.|+ +..+-.+...|..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHH
Confidence 33334444444444444444444 44443 2233333333344444444444444443 2232 3333334444444
Q ss_pred cCChHHHHHHHH
Q 003148 622 AGLLGEALDLIK 633 (844)
Q Consensus 622 ~g~~~eA~~~~~ 633 (844)
.|+.+.|.+-|+
T Consensus 116 lG~~~~A~~aF~ 127 (157)
T PRK15363 116 CDNVCYAIKALK 127 (157)
T ss_pred cCCHHHHHHHHH
Confidence 444444444443
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.00048 Score=53.65 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=31.1
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 621 RAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
..|++++|+++|+++ ...| +..++..+..+|.+.|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555554 2233 344555555555555555666555555555555554444333
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.01 E-value=0.0016 Score=53.27 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChH
Q 003148 551 EGNGEQAVELFNEMLRQGIKP---DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLG 626 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 626 (844)
.|+++.|+.+|+++.+ ..| +...+..+..++.+.|++++|..+++. .+ ..|+ ....-.+...|.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHH
Confidence 4566666666666666 233 223344455566666666666666655 22 1222 122223355555566666
Q ss_pred HHHHHHHh
Q 003148 627 EALDLIKS 634 (844)
Q Consensus 627 eA~~~~~~ 634 (844)
+|++.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66655543
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.01 E-value=0.22 Score=51.10 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=51.9
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC----CCCCChH--HHHHHHHHH---Hhc
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPNDV--IWGSLLAAC---QKH 654 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~~~--~~~~ll~~~---~~~ 654 (844)
+.|..+.|+++-+.... ..|. .-.+...++..+..|+++.|+++++.- .+.||.. .--.|+.+- .-.
T Consensus 166 r~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 166 RLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred hcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 44555555554444432 3333 223344444555555555555555433 2233322 111222221 112
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-+...|.....++.++.|+-...-+.-+..|.+.|+..++-.+++.+-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 3444455555555555555544445555555555555555555555443
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.096 Score=56.90 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=28.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP-VEPND 641 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~ 641 (844)
+.+...+.-|-++|.+|-. ...++++....++++||..+-++.| +.||+
T Consensus 757 lk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 3344455566666666543 2346666777777777777777763 44443
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.00 E-value=0.59 Score=48.78 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=85.7
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 592 (844)
.|.-+...|+...|.++-.+..-||-.-|-..+.+++..+++++-..+... +-.++-|-..+.+|...|..++|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455678888888888888888888888889999999988876654331 22347788888888888888888
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 003148 593 WHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQK 653 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~ 653 (844)
..+...+ .+..-+.+|.++|++.+|.+.--+.. |...+..+...|..
T Consensus 257 ~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 257 SKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCC
Confidence 8887652 22456788888888888877755442 55555544444433
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.0049 Score=62.94 Aligned_cols=257 Identities=14% Similarity=0.048 Sum_probs=149.7
Q ss_pred ccccCChHHHHHHHHHHHhCCcc---cChhhHHhHHHHccccCchHHHHHHHHHH--HHh--CCC-CchhHHhHHhhhHH
Q 003148 447 LTQENMFEEAMELFRVMLSERIK---VDRVTMVGVASACGYLGALDLAKWIYAYI--EKN--GIH-CDMQLATALVDMFA 518 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~--~~~--g~~-~~~~~~~~li~~y~ 518 (844)
+++.|+....+.+|+..++.|.. .=...|..+-.|+..++++++|.++|..= ... |-. ........|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45666677777777777665522 11223444555666667777777765431 111 100 01112222334444
Q ss_pred hcCCHHHHHHHHHhcC-------CC--CHhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH----
Q 003148 519 RCGDPQRAMQVFRRME-------KR--DVSAWTAAIGAMAMEGN--------------------GEQAVELFNEML---- 565 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~---- 565 (844)
-.|.+++|.-...+-. ++ ....+..+...|...|+ .+.|.+.|.+=+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666654433221 10 11233345555544332 233444444322
Q ss_pred HCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhH---hhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-----
Q 003148 566 RQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMT---DIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----- 635 (844)
Q Consensus 566 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----- 635 (844)
..|-.- -...|..|.+.|.-.|++++|+..++.=. +.+|-... ...++.+.+.+.-.|+++.|.+.++..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 222111 12456677777777899999998876532 23554433 557788899999999999999988765
Q ss_pred CCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 636 PVE---PNDVIWGSLLAACQKHQNVDIAAYAAERITEL----DP--EKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 636 ~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+. -......+|.+.|....+++.|+..+.+=+.+ +. ....++..|+++|...|.-++|..+.++-++
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 111 13446677888888888899998877665542 22 2345788999999999999999888776654
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.93 E-value=0.0015 Score=50.96 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQ-NVDIAAYAAERITELDP 672 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 672 (844)
...|..+...+.+.|++++|+..|++. .+.|+ ...|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 346777788888888888888888887 55564 558888888899999 79999999999999988
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.013 Score=50.92 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM---PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPE---KSGVHVLLSNIYA 686 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 686 (844)
+..++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++-.|+ +....+.++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566677777777777765 22221 235566777888888888888888888887777 5566677778888
Q ss_pred HcCCchHHHHHHHHH
Q 003148 687 SAGKWTNVARVRLQM 701 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m 701 (844)
..|+++||.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888876443
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.84 E-value=0.11 Score=47.57 Aligned_cols=151 Identities=10% Similarity=0.016 Sum_probs=100.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
.+.=+++....-..+-.+ ..|....-..|..+....|+..||...|++... --+.-|....-.+..+....++..+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHH
Confidence 333444444443333333 566666666777888888888888888888765 22334455666677777778888888
Q ss_pred HHHHHhC-CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 629 LDLIKSM-PVEPN---DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 629 ~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...+++. ...|+ +..--.+...+...|..+.|+..++.++.--|+- ..-...+..++++|+.+++..-+..+.+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8888776 22221 2233445667888899999999999999887753 4455566778889988888765555444
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.83 E-value=0.025 Score=51.71 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=91.4
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCc
Q 003148 602 IHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSG 676 (844)
Q Consensus 602 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~ 676 (844)
+..+.|++.+--.|...+.+.|+..||...|++. .+.-|....-.+..+...-++...|...++.+.+.+|. .|.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3456788888889999999999999999999988 45568888888999999999999999999999998884 667
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
....++.+|...|++++|+.-++...+.-
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 88899999999999999999999887653
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.79 E-value=0.0084 Score=60.54 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLS 682 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 682 (844)
.|..-+..+.+.|++++|...|+.. ...|+. ..+..+..++...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444455555567777777776666 333432 3555566677777888888888888887777653 3455667
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 003148 683 NIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 683 ~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|...|++++|.++++...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888888888777654
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.76 E-value=0.81 Score=47.76 Aligned_cols=109 Identities=23% Similarity=0.279 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCc
Q 003148 408 SWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGA 487 (844)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 487 (844)
+.+..|.-+...|+...|.++-.+..-+|-.-|-..+.+|+..++|++-.++... +-.++.|-.++.+|...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444455556666666666666666666777777777777777777766554321 1234677777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHh
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRR 532 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 532 (844)
..+|..+... + .+..-+.+|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777666554 1 124567889999999999776433
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.0056 Score=64.75 Aligned_cols=65 Identities=14% Similarity=-0.098 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV---HVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|+.+..+|...|++++|+..++++++++|++... |..++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35577777777777777777777777777777777643 777777777777777777777777664
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.71 E-value=0.016 Score=62.03 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCC-C-----CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003148 175 VENCLINFYGECGDIVDGRRVFDEMSE-R-----NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISA 248 (844)
Q Consensus 175 ~~~~Li~~y~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 248 (844)
....+++......+++++..++-+... | -..|..++|+.|.+.|..++++++++.=...|+-||.+||+.+++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 333344444444455555555544432 1 1224457777777777777777777777777888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 003148 249 CAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKC 287 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 287 (844)
+.+.|++..|.++...|...+.-.+..++..-+..+.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888777777776666666665555555555
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.69 E-value=0.016 Score=62.12 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred CCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC----CCccc
Q 003148 133 GILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMG--FDRDVFVENCLINFYGECGDIVDGRRVFDEMSE----RNVVS 206 (844)
Q Consensus 133 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~ 206 (844)
+.+.+......++..+....+++.+..++-+..... ...-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344555666777777777777777777666666542 222234455777777777777777777765432 77777
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003148 207 WTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKL 252 (844)
Q Consensus 207 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 252 (844)
+|.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777776666777776666666544
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.6 Score=49.03 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=67.2
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
.-+...|+..+|.++-.+..-+|-..|---+.+++..+++++-+++-+.+. ..+-|.-...+|.+.|+.+||..
T Consensus 692 ~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 334556777788888777777777777777777777777776555444332 14455566777778888888877
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLI 632 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 632 (844)
|+.+... +.-.+.+|.+.|++.+|.++-
T Consensus 766 Yiprv~~----------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGG----------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCC----------hHHHHHHHHHhccHHHHHHHH
Confidence 7754422 114667777777777776654
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.65 E-value=0.0052 Score=48.53 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
.+|.+.+++++|.+.++++ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999888 5666 45577778888899999999999999999999988655443
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.62 E-value=0.034 Score=48.41 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHH
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLG 620 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 620 (844)
+..++-..|+.++|+.+|++.++.|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998877653 5677888889999999999999998877432111 1122223445677
Q ss_pred hcCChHHHHHHHHh
Q 003148 621 RAGLLGEALDLIKS 634 (844)
Q Consensus 621 ~~g~~~eA~~~~~~ 634 (844)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888877654
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.61 E-value=0.074 Score=55.01 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=72.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-CcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHH
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG-GLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLL 619 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 619 (844)
+..|...|++..|-..+.+ +...|... |++++|.++|++..+.+..... ...+..+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4555555555555544444 44467777 8999999999988774432222 34566778889
Q ss_pred HhcCChHHHHHHHHhCC---CCCC-----hH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 620 GRAGLLGEALDLIKSMP---VEPN-----DV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m~---~~p~-----~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+.|++++|.++|++.. ...+ .. .+-..+-.+...||...|...+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 99999999999998871 1111 11 111122234557899999999999999988543
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.59 E-value=0.0035 Score=43.66 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
.+|..+..++...|+.++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888999999999999999999999999999988887764
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.58 E-value=0.03 Score=53.07 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=83.1
Q ss_pred ccChhhHHhHHHHcc-----ccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHH
Q 003148 469 KVDRVTMVGVASACG-----YLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTA 543 (844)
Q Consensus 469 ~p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~ 543 (844)
..|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 456677777777664 457788888889999999999999999999998875 3322 11222211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc-HHHHHHHHHHhHh
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL-VNQGWHLFRSMTD 601 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 601 (844)
-. -...+.+-|++++++|...|+-||..|+..|++.+.+.+. +.+.++..--|.+
T Consensus 112 -F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 -FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 1124556789999999999999999999999999887665 3344444444444
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.023 Score=58.86 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKV 721 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 721 (844)
.++..|...|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 356667777788999999999999999999999999999999999999999999999999874
Q ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 003148 722 HEFTSGDESHPEMNNISSMLREMNCRLRD 750 (844)
Q Consensus 722 ~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 750 (844)
.|..+.|...|..+.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 45556666666666665554
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.53 E-value=0.26 Score=49.46 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=103.5
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCC--C-HhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhc
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKR--D-VSA---WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSH 585 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~--~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 585 (844)
...+.+.|++++|.+.|+.+... + ... .-.++.+|-+.+++++|+..|++.++ ..|+. +.+...+.+.++
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHhh
Confidence 33455678888888888887632 2 111 23355667788888888888888888 55554 344444443331
Q ss_pred --cC---------------c---HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHH-
Q 003148 586 --GG---------------L---VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIW- 644 (844)
Q Consensus 586 --~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~- 644 (844)
.+ + ..+|...|+.+++.+ |+ +.-..+|...+..+. +...-
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~---~~la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK---DRLAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH---HHHHHH
Confidence 10 1 234445555555422 33 222334444333321 00000
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 645 -GSLLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 645 -~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-....-|.+.|++.-|..-++.+++--|+.+ .+...+..+|...|..++|.++......
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1233447788999999999999999888754 4667888999999999999998876643
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.50 E-value=1.4 Score=46.47 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=58.5
Q ss_pred HHHHHHhCCCCC----ChHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 628 ALDLIKSMPVEP----NDVIWGSLLAA--CQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 628 A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
-+.++++.++.| +...-|.|..| +..+|++.++.-...=+.++.| ++.+|.++|-.+....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345566666665 33456666666 4679999999988888889999 7889999999999999999999999654
Q ss_pred H
Q 003148 702 K 702 (844)
Q Consensus 702 ~ 702 (844)
.
T Consensus 522 P 522 (549)
T PF07079_consen 522 P 522 (549)
T ss_pred C
Confidence 3
No 203
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.47 E-value=0.02 Score=48.92 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHHcCC
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS----GVHVLLSNIYASAGK 690 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 690 (844)
-+++..|++++|++.|.+. .+-| +...||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4577889999999999887 4444 677899999999999999999999999999754433 368889999999999
Q ss_pred chHHHHHHHHHHhCC
Q 003148 691 WTNVARVRLQMKEQG 705 (844)
Q Consensus 691 ~~~a~~~~~~m~~~~ 705 (844)
-|.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999999988776
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=1.8 Score=48.06 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=12.5
Q ss_pred cccccCChHHHHHHHHHHHh
Q 003148 446 GLTQENMFEEAMELFRVMLS 465 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~ 465 (844)
.+.+.|++-+|.+++.+|.+
T Consensus 932 ~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 932 KDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhhhcccchhHHHHHHHHhH
Confidence 34456666667777777744
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=0.38 Score=50.65 Aligned_cols=160 Identities=19% Similarity=0.133 Sum_probs=105.8
Q ss_pred HHhhhHHhcCCHHHHHHHHHhcCCC---CH----hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 512 ALVDMFARCGDPQRAMQVFRRMEKR---DV----SAWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 512 ~li~~y~k~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
.++-.|....+++...++++.+... ++ ..-....-++-+ .|+.++|+.++..++...-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444578888888888888888743 11 111223344555 7899999999999777666777788877766
Q ss_pred HHhc---------cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChH----HHHHHH---Hh-----CCCCC-
Q 003148 582 ACSH---------GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLG----EALDLI---KS-----MPVEP- 639 (844)
Q Consensus 582 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----eA~~~~---~~-----m~~~p- 639 (844)
.|-. ....++|+..|.+.-+ +.|+..+--.++.++..+|... +..++- .. -...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 3357788888876644 6677555445555666666422 222222 11 11223
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 640 -NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 640 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
|--.+.+++.++.-.||.+.|.+++++++.+.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44455788899999999999999999999998754
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.42 E-value=0.029 Score=46.96 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=67.4
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCChhH
Q 003148 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGI-LPDKFTFPFVLNACTKSS--------AFGEGVQVHGAIVKMGFDRDVFV 175 (844)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 175 (844)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777777999999999999999999 899999999999987643 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 003148 176 ENCLINFYGE 185 (844)
Q Consensus 176 ~~~Li~~y~~ 185 (844)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.38 E-value=1.2 Score=44.00 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=143.3
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRME-----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
..........+...+.+..+...+.... ......+..+...+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4566677778888888888888887654 33455677777778888889999999999888433331 22222223
Q ss_pred -HHhccCcHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--hHHHHHHHHHHHh
Q 003148 582 -ACSHGGLVNQGWHLFRSMTDIHGVSP----QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN--DVIWGSLLAACQK 653 (844)
Q Consensus 582 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~ 653 (844)
++...|.++++...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 78889999999999998854 333 2334444445567788999999998887 44444 5677888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.++.+.|...+..+++..|.....+..++..+...|.++++...+....+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999986666777777777778899999888777664
No 208
>PRK11906 transcriptional regulator; Provisional
Probab=96.38 E-value=0.14 Score=54.71 Aligned_cols=158 Identities=9% Similarity=0.112 Sum_probs=104.2
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCChh-HHHHHHHHHh---------ccCcHHHHHHHHHHhH
Q 003148 539 SAW--TAAIGAMAME-----GNGEQAVELFNEMLR-QGIKPDSI-VFVGVLTACS---------HGGLVNQGWHLFRSMT 600 (844)
Q Consensus 539 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 600 (844)
..| ..++.|.... -..+.|+.+|.+.+. +.+.|+.. .|..+...+. ......+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 4455554431 134678889999882 22788764 3333322211 1234566777777776
Q ss_pred hhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 601 DIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 601 ~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+ +.|+ ......+..+++-.|+++.|..+|++. .+.||. .+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 6 4444 556666777778888899999999988 677864 477777777788899999999999999999977655
Q ss_pred HHHHH--HHHHHcCCchHHHHHHHH
Q 003148 678 HVLLS--NIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 678 ~~~l~--~~~~~~g~~~~a~~~~~~ 700 (844)
-+.-. ++|... ..++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 54433 345544 45667766643
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.37 E-value=0.027 Score=47.21 Aligned_cols=79 Identities=20% Similarity=0.135 Sum_probs=64.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhcC--------CchHHHHHHHHHHHhCCCcchhHHH
Q 003148 208 TSLICACARRDLPKEAVYLFFEMVEEGI-KPNSVTMVCVISACAKLQ--------NLELGDRVCAYIDELGMKANALMVN 278 (844)
Q Consensus 208 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 278 (844)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 899999999999887653 2345678888899999999999999
Q ss_pred HHHHHHHh
Q 003148 279 ALVDMYMK 286 (844)
Q Consensus 279 ~Li~~y~~ 286 (844)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887654
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.35 E-value=0.03 Score=53.06 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=70.9
Q ss_pred HHHHHhc--CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-------------
Q 003148 527 MQVFRRM--EKRDVSAWTAAIGAMAME-----GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG------------- 586 (844)
Q Consensus 527 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 586 (844)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 355666677777666543 66676777788888888888888888888766442
Q ss_pred ---CcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 587 ---GLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 587 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
.+.+-|+.++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234568888999987 8999999999999988887764
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=2.3 Score=47.19 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHH
Q 003148 381 MIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELF 460 (844)
Q Consensus 381 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 460 (844)
.++.|.+..++++-+.+-..+++ +....-.|.+++.+.|.-++|.+.|-+-..|. +-+..+...++|.+|.++-
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 33334455556666666666655554433321 1233455566677777666
Q ss_pred HHH
Q 003148 461 RVM 463 (844)
Q Consensus 461 ~~m 463 (844)
+..
T Consensus 902 q~~ 904 (1189)
T KOG2041|consen 902 QRF 904 (1189)
T ss_pred Hhc
Confidence 554
No 212
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.16 E-value=0.14 Score=53.01 Aligned_cols=107 Identities=9% Similarity=0.060 Sum_probs=67.7
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHhC-----C-CCCC--hHHHHHHHHHHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA-GLLGEALDLIKSM-----P-VEPN--DVIWGSLLAACQ 652 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m-----~-~~p~--~~~~~~ll~~~~ 652 (844)
.|...|++..|-..+.. +..+|... |++++|.+.+++. . -.+. ..++..+...+.
T Consensus 103 ~y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 45555555555555444 44566666 7888888887776 1 1111 235666777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 653 KHQNVDIAAYAAERITELDPEKS-------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.|++++|...+++.....-+++ ..+...+-++...|+...|.+.++.....
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999987433222 13345555677889999999999887754
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.65 Score=48.34 Aligned_cols=145 Identities=15% Similarity=0.088 Sum_probs=93.8
Q ss_pred cccCchHHHHHHHHHHHHhCCCCchhHHhHHhh--hHHhcCCHHHHHHHHHhcCCCCHh---------------HHHHHH
Q 003148 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVD--MFARCGDPQRAMQVFRRMEKRDVS---------------AWTAAI 545 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~--~y~k~g~~~~A~~~~~~~~~~~~~---------------~~~~li 545 (844)
...++.+.+.++-..+.+..-. ..+..++. ++--.++.+.|...|++...-|.. .|.-=.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 5567777887776666654321 12222222 233457788888888877633221 233333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDS-----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLL 619 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 619 (844)
.-..++|++.+|.+.|.+.+. +.|+. ..|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCH 331 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHH
Confidence 445678999999999999987 56654 4466666677889999999998888766 5444 33333334455
Q ss_pred HhcCChHHHHHHHHhC
Q 003148 620 GRAGLLGEALDLIKSM 635 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m 635 (844)
.-.++|++|.+-+++.
T Consensus 332 l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567888888888876
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.14 E-value=2.3 Score=45.05 Aligned_cols=457 Identities=12% Similarity=0.061 Sum_probs=225.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHhhcCCC-CcccHHHHHHHH--HhCCCc
Q 003148 150 KSSAFGEGVQVHGAIVKMGFDRD------VFVENCLINFYGECGDIVDGRRVFDEMSER-NVVSWTSLICAC--ARRDLP 220 (844)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~ 220 (844)
+.+++.++..+|.++.+.- ..+ ....+.++++|.-. +++.-.....+..+. ....|-.+..+. .+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 4566667777776666543 111 23455666776543 233333333333221 123455555443 467788
Q ss_pred hHHHHHHHHHHHc--CCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCC----cchhHHHHHHH
Q 003148 221 KEAVYLFFEMVEE--GIKP------------NSVTMVCVISACAKLQNLELGDRVCAYIDELGMK----ANALMVNALVD 282 (844)
Q Consensus 221 ~~A~~l~~~m~~~--g~~p------------d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~Li~ 282 (844)
.+|++.+....+. +-.| |-+.=+..+.++...|.+.+|+.++..++..=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888887776654 3222 1122244566777889999999999888766444 78889999888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc--CChhhHH
Q 003148 283 MYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQL--GDLLCGR 360 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~ 360 (844)
++++.=-++- -+.+...=..-|--||..|.+.=+.-++. .=..+.|...-+..++....-. ..+.--.
T Consensus 176 mlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 176 MLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred HHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 8877522221 11111112234566666665432211110 0001222222222222221111 1111122
Q ss_pred HHHHHHHHhCCCchh-hHHHHHHHHHHHcCCHHHHHHHHhhcC--------CCCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 003148 361 MCHGYVLRNGLEGWD-SICNTMIDMYMKCGKQEMACRIFDHMS--------NKTVVSWNSLIAGLIKNGDVESAREVFSE 431 (844)
Q Consensus 361 ~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (844)
+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++...|...+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223222333333332 223334444433 3334333333322 12334666777777777777777766655
Q ss_pred CCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCch-hHH
Q 003148 432 MPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDM-QLA 510 (844)
Q Consensus 432 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~ 510 (844)
+..-|+..|- .+..--..+.++.|... |...++. +..=..++..+....+..-. ++|
T Consensus 324 L~~ldp~~sv--------s~Kllls~~~lq~Iv~~----DD~~~Tk----------lr~yL~lwe~~qs~DiDrqQLvh~ 381 (549)
T PF07079_consen 324 LKILDPRISV--------SEKLLLSPKVLQDIVCE----DDESYTK----------LRDYLNLWEEIQSYDIDRQQLVHY 381 (549)
T ss_pred HHhcCCcchh--------hhhhhcCHHHHHHHHhc----chHHHHH----------HHHHHHHHHHHHhhcccHHHHHHH
Confidence 4432322220 01111112233333321 2222211 11112222333222222111 000
Q ss_pred -hHHhhhHHhcCC-HHHHHHHHHhcC---CCCHhHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCChhH---
Q 003148 511 -TALVDMFARCGD-PQRAMQVFRRME---KRDVSAWTAAI----GAMAME---GNGEQAVELFNEMLRQGIKPDSIV--- 575 (844)
Q Consensus 511 -~~li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t--- 575 (844)
---..-+-+.|. -++|.++++.+. .-|...-|... .+|.+. ....+-+.+-+-+.+.|+.|-.+.
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 011122344555 677788877665 34554444322 123221 123334444444556787775432
Q ss_pred -HHHHHHH--HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 576 -FVGVLTA--CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 576 -~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
-+.+..| +...|++.++..+-.-+.+ +.|++.+|..++-.+....+++||.+++.+.| |+..+|++-
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 3333333 3467888888887777766 88999999888888888889999999999885 566666653
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.12 E-value=0.048 Score=55.13 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=55.4
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNV 657 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~ 657 (844)
...|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+++ ...|+ ...|..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445555555555555552211110 124445666666666666666666665 22222 33455556667788899
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 003148 658 DIAAYAAERITELDPEKS 675 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~ 675 (844)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999998888764
No 216
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.05 E-value=0.084 Score=54.39 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=60.4
Q ss_pred HHhHHHHccccCchHHHHHHHHHHHHhC-CCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHh
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIEKNG-IHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAM 550 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 550 (844)
|..++..+-+.+.++.++.+|..+.+.+ ...++.+..+++..+ -.++.+.|.++|+... ..+...|...+.-+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4444555555555666666666655332 122333333333221 1344444666666554 3455556666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.|+.+.|..+|++.+.. .|.. ..|...+.-=.+.|+++....+.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666553 2222 2455555544555555555555555554
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=3.5 Score=46.45 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=89.8
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 568 GIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
|..-...|.+-.+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-+++. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3334445666677778889999999988776643 888888888899999999999999888772 24556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
..+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.+.--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 88999999999998886654322 25678899999999998876443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.2 Score=48.55 Aligned_cols=136 Identities=12% Similarity=0.142 Sum_probs=90.0
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCc-----hhHHhHHh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCD-----MQLATALV 514 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-----~~~~~~li 514 (844)
-+.++..+...|.+.-.+.++.+.++....-+......+.+.--+.|+.+.+...++...+..-..| ..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455666666777777777888877765455666667777777778888888888887765433333 33333333
Q ss_pred hhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFV 577 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 577 (844)
-.|.-++++..|...|.+++. .|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 446667788888888887773 3455555544444556888888888888888 566654433
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.19 Score=50.30 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCChH-
Q 003148 570 KPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG---LLGEALDLIKSM-PVEPNDV- 642 (844)
Q Consensus 570 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~p~~~- 642 (844)
.|+. ..|..|..+|...|+.+.|..-|....+ +.|+ ...+..+..++..+. .-.++.++|+++ ..+|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 4544 6777777777777777777777777766 4443 455556666554433 345778888887 6667554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...-|..++...|++.+|...++++++..|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 444455578889999999999999998877654
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=95.76 E-value=0.11 Score=55.32 Aligned_cols=117 Identities=7% Similarity=0.017 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR---------AGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 466888899999844458888 5566655544321 22345677777766 5555 5666666666777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++.|...++++..++|+.+..+...+++..-.|+.++|.+..++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886554
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.73 E-value=3.4 Score=43.67 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=74.2
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH-HHHHH
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRME-----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF-VGVLT 581 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 581 (844)
.++..+++.-.+..-++.|+.+|-+.. .+++..++++|.-++ .|+..-|..+|+--.. .-||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 344444554445555555555555443 234444555554443 3445555555555444 34444332 23333
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcC
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQ 655 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 655 (844)
-+...++-..|+.+|+..+++ +..+ ...|..||+-=..-|++..+..+=++| ..-|...+...+.+-|....
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 444556666666666654431 2222 346666676667778887777776666 34455444444445555443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.72 E-value=0.014 Score=46.75 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITEL----DPEK---SGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+++.+...+...|++++|+..+++++++ .+++ ..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777777888888888888877753 2222 34677888889999999999888877653
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=1 Score=43.87 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=99.6
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCC--CCHhH--------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEK--RDVSA--------WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGV 579 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~--------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 579 (844)
+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.++++.++....-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 34555555544444444444443322 22223 345556666677777888889998885444455667778
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH-----HHHHHhcCChHHHHHHHHhCC-CCC-ChHHHHHHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM-----VDLLGRAGLLGEALDLIKSMP-VEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~~~~ 652 (844)
.+.-.+.|+.+.|..+|++..+..+ +.+....+.+ ...|.-+.++.+|...+.+.+ ..| |...-|.-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999998776432 2332233333 334555667777777777763 233 3333333332333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003148 653 KHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
-.|+...|.+..+.+++..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccc
Confidence 45777888888888888777644
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.67 E-value=0.14 Score=46.83 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=70.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVS--PQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 660 (844)
....|+.+.+...++.+...+.-. |+... ..-.....+.++++ -..+...++..+...|+.++|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 344566777777777766644211 22111 11122222333332 123556677778889999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...+++++..+|-+...|..+..+|...|+..+|.++++.++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998865
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.61 E-value=0.016 Score=46.40 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-------P-VEPN-DVIWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
.|+.+...|.+.|++++|++.+++. + -.|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444445555555555555544443 1 1122 346666777777788888888887777654
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.60 E-value=0.23 Score=53.08 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=94.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh---H
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL---G 626 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~ 626 (844)
+..+.++-+++-++.++ +.||..+-..++ +--.+..+.++.+++++..+... . .|.+.... .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----H-------hhchhhhhhccc
Confidence 45667777888888888 889886654444 33345568899999988876110 0 01111100 0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-.+...|...+...+.+.++..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111211122233444455777778899999999999999987774 4457788999999999999999999887654
Q ss_pred CCccCCccc
Q 003148 705 GIRKLPGSS 713 (844)
Q Consensus 705 ~~~~~~~~s 713 (844)
...|....+
T Consensus 325 ~lpkSAti~ 333 (539)
T PF04184_consen 325 SLPKSATIC 333 (539)
T ss_pred cCCchHHHH
Confidence 444444333
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.51 E-value=4 Score=43.12 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 521 GDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQG-IKPDSIVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 521 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
|+++.-.+++-.-..+=...|...+..-.+..-.+.|..+|-+..+.| +.++...+.+.+.-++ .|+...|..+|+.-
T Consensus 380 ~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelG 458 (660)
T COG5107 380 NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELG 458 (660)
T ss_pred CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHH
Confidence 445444443333233446678888888888888999999999999999 5566677887776554 57888999999877
Q ss_pred HhhcCCCCCcchH-HHHHHHHHhcCChHHHHHHHHhC--CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 600 TDIHGVSPQIVHY-GCMVDLLGRAGLLGEALDLIKSM--PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 600 ~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
... -||...| .-..+-+.+-++-+.|..+|++. .+..+ ..+|..++.--..-|++..+..+-+++.+.-|+.
T Consensus 459 l~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 459 LLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 662 3554443 34567778899999999999966 23323 4589999998899999999999999999999986
Q ss_pred CchHH
Q 003148 675 SGVHV 679 (844)
Q Consensus 675 ~~~~~ 679 (844)
...-+
T Consensus 536 n~~ev 540 (660)
T COG5107 536 NLIEV 540 (660)
T ss_pred hHHHH
Confidence 43333
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.32 E-value=0.1 Score=53.69 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHhHHHHccccCchHHHHHHHHHHH----HhCCC-CchhHHhHHhhhHHhcCCHHHHHHHHHhcC-------CCC--HhH
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIE----KNGIH-CDMQLATALVDMFARCGDPQRAMQVFRRME-------KRD--VSA 540 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~--~~~ 540 (844)
|..+-..+.-+|+++.+...|+.-. +.|-. .....++.|.++|.-.|+++.|.+.++... .+. ..+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555678888887776432 22321 123455667788888889998888877543 332 345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLR----QG-IKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..+|...|.-..++++|+.++.+=+. .+ ..-....+.+|..++...|.-++|..+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66788888888888899888765332 11 112336788999999999999999887766544
No 229
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.32 E-value=3.6 Score=41.29 Aligned_cols=62 Identities=11% Similarity=-0.079 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCccc----HHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 003148 105 MYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFT----FPFVLNACTKSSAFGEGVQVHGAIVKMG 168 (844)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g 168 (844)
.+-.....+.+.|++++|++.|+.+...- |+... .-.+..++-+.++++.|...+++.++.-
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33344555677888888888888887643 33321 1233455667777777777777777664
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.31 E-value=3.2 Score=40.70 Aligned_cols=218 Identities=19% Similarity=0.131 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHhCCccc-ChhhHHhHHHHccccCchHHHHHHHHHHHHh-CCCCchhHHhHHhhhHHhcCCHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKV-DRVTMVGVASACGYLGALDLAKWIYAYIEKN-GIHCDMQLATALVDMFARCGDPQRAMQ 528 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~ 528 (844)
+....+...+.......... ...............+.+..+...+...... ........+..+...+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444555555544432211 2344444555555666666666666555542 334455566667777778888889998
Q ss_pred HHHhcCC--CC-HhHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 529 VFRRMEK--RD-VSAWTAAIG-AMAMEGNGEQAVELFNEMLRQGIKP----DSIVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 529 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
.+..... ++ ...+..... .+...|+.+.|...|.+... ..| ....+......+...+..+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887764 22 223333344 78899999999999999966 444 22445555555778899999999999998
Q ss_pred hhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 601 DIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 601 ~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+ ..++ ...+..+...+...+++++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7 3333 567788888999999999999999887 45555 455666666666777899999999999999887
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.14 E-value=1.1 Score=43.57 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSG---VHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 696 (844)
..-|.+.|.+.-|..-++.+++.-|+.+. +...++.+|.+.|..+.+..
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 44577889999999999999999887653 45678888999998885443
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.48 Score=49.45 Aligned_cols=137 Identities=10% Similarity=0.038 Sum_probs=92.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 625 (844)
+.|.+.|++..|...|++.+. .-+ +...-+.++...... .....+..+.-.|.+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~--~l~-----------~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVS--FLE-----------YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHH--Hhh-----------ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 456677777777777777665 111 111111122222111 2233566677788888899
Q ss_pred HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH-HHHHHHHH
Q 003148 626 GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV-ARVRLQMK 702 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 702 (844)
.+|++.-++. ..+| |.-....=..+|...|+++.|+..++++++++|+|-.+..-|+.+-.+.....+. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888876 5555 4555556677889999999999999999999999988888887776666655544 77888886
Q ss_pred hC
Q 003148 703 EQ 704 (844)
Q Consensus 703 ~~ 704 (844)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 54
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.10 E-value=0.83 Score=46.63 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCh---hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cch
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLR-QGIKPDS---IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVH 611 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 611 (844)
+|-.+..++.+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+...-..| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554443332 2333321 22233444555566788888888877662222222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCc-
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-------PVEPNDVIWG-----SLLAACQKHQNVDIAAYAAERITEL--DPEKSG- 676 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~- 676 (844)
|..|...|++..++++|.-+..++ +++--...|. .+.-+++..|.+-.|.+..+++.++ ...|-.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777888888888877766554443 3331122222 3345677788888888777777653 222322
Q ss_pred ---hHHHHHHHHHHcCCchHHHHHHHH
Q 003148 677 ---VHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 677 ---~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
....++++|...|+.|.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 334678888888887776655543
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.10 E-value=1.2 Score=43.27 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
.+-.....+.+.|++++|++.|+++... -|+. .....++.++.+.|++++|...++...+.+.-.|... +...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHH
Confidence 3444555677788889999999888874 3332 3455667788888888888888888887554444421 1111
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------------hH
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG-----------------VH 678 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~ 678 (844)
..+.+...... ..+ .. ....+...+|...++.+++.-|+++- .-
T Consensus 84 ~~g~~~~~~~~---~~~---~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIP---GIL---RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHH---HHH----T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc---cch---hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111100000 000 00 11122344555566666666665531 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..++..|.+.|.|..|..-++.+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35688899999999999999888764
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.91 E-value=0.31 Score=43.40 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcC
Q 003148 618 LLGRAGLLGEALDLIKSM----PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG---VHVLLSNIYASAG 689 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g 689 (844)
...+.|++++|.+.|+.+ |..| ...+--.|+.++.+.|++++|...+++.++++|.++. ++...+-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345677888888888777 3333 2335556778888999999999999999999988764 3344444444444
Q ss_pred C
Q 003148 690 K 690 (844)
Q Consensus 690 ~ 690 (844)
.
T Consensus 99 ~ 99 (142)
T PF13512_consen 99 E 99 (142)
T ss_pred h
Confidence 3
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.85 E-value=1.6 Score=37.85 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=76.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
.-.|..++..++..+...+. +..-++-++--....-+-+-..+.++..-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34567777777777766521 11222222211111222233344444443322222 24444444
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 629 LDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 629 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
..-+-.++. +.......+.+...+|+-++-.+++..+.+-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444422 33344556677888999999889999888766667789999999999999999999999999999874
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.82 E-value=0.79 Score=49.06 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|.+.|+.++|+..++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777777777777777777766 566643 366667777777777777777776665
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.62 E-value=9 Score=42.39 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=126.2
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
++..+|..-++.-.+.|+.+...-+|++..-+- ...|--.+.-....|+.+-|..++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 356678888888888999999999999887442 23455555555555888888887777666433333333333333
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHH---HHHHhC-CCCCChHHHHHHHH-----HH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEAL---DLIKSM-PVEPNDVIWGSLLA-----AC 651 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~ 651 (844)
.+-..|+.+.|..+++...+++ |+ +..-.--+.+..|.|..+.+. +++... +.+-+..+...+.- -+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4667899999999999998843 66 333344567788999999888 665554 22223333333322 23
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
...++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 456889999999999999999999999999888766653
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.43 E-value=0.068 Score=34.51 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888899999999999999999998863
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.36 E-value=0.099 Score=33.65 Aligned_cols=33 Identities=30% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357777788888899999999999999888875
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.25 E-value=0.27 Score=43.25 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHh--------------HhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSM--------------TDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM---- 635 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m---- 635 (844)
.++.+++-++++.|+++....+.+.. .....+.|+.....+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555555555555554444332 111233344444555555555555555555554433
Q ss_pred CCCCChHHHHHHHHHH
Q 003148 636 PVEPNDVIWGSLLAAC 651 (844)
Q Consensus 636 ~~~p~~~~~~~ll~~~ 651 (844)
+++-+..+|..|+.-+
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3333344555555433
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.22 E-value=1.7 Score=39.34 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHhCCCCCChHHHHHHHHHH
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA-GLLGEALDLIKSMPVEPNDVIWGSLLAAC 651 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 651 (844)
......++..|.+.+.++++..++.++.. |...++.+... ++.+.|.+++++-. +...|..++..|
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 33444455566666666666655554422 22233333333 56666666666531 445666665554
Q ss_pred H
Q 003148 652 Q 652 (844)
Q Consensus 652 ~ 652 (844)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 3
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=2.5 Score=40.98 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhCC-----C--CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCchH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSMP-----V--EPNDV-IWGSLLAACQKHQNVDIAAYAAERITE----LDPEKSGVH 678 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m~-----~--~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 678 (844)
.|.....+|.|..+++||-..|.+-. + -|+.. .+-+.+-.+....|+..|++.++..-+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444556667777777666665541 1 11211 222333333344567777777766554 344555555
Q ss_pred HHHHHHHHHcCCchHHHHHH
Q 003148 679 VLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~ 698 (844)
..|...| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5555544 566666666554
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.16 E-value=0.1 Score=45.96 Aligned_cols=53 Identities=8% Similarity=0.138 Sum_probs=45.4
Q ss_pred CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 003148 567 QGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL 619 (844)
Q Consensus 567 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 619 (844)
....|+..+..+++.+|+..|++..|.++.+...+.|+++.+...|..|+.--
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999888888888777543
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=1.4 Score=44.56 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH----HHhccCcHHHHH
Q 003148 521 GDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT----ACSHGGLVNQGW 593 (844)
Q Consensus 521 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~ 593 (844)
|+..+|...++++. ..|..+|+---.+|.-+|+.+.-...+++.+-. -.||...|..+-. ++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44444444444443 234445555455555555555555555544431 1333322222111 122344555555
Q ss_pred HHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 594 HLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
+.-++..+ +.|. .-.-.++...+-..|+..|+.+++.+-
T Consensus 196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 44444433 2221 112223444444455555555554443
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.83 E-value=0.42 Score=46.93 Aligned_cols=100 Identities=24% Similarity=0.314 Sum_probs=80.4
Q ss_pred HHHHHHHhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----------
Q 003148 525 RAMQVFRRME--KRDVSAWTAAIGAMAME-----GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG---------- 587 (844)
Q Consensus 525 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 587 (844)
..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 77888999998888765 556666777889999999999999999998776532
Q ss_pred ------cHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh
Q 003148 588 ------LVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 588 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 625 (844)
+-+=++.++++|.. +|+.||-++-..|+++++|.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22347889999988 99999999999999999998853
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=5.3 Score=40.21 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
......|+..+|..+|+...+ ..|+. ..-..+..++...|+++.|..++..+..... .........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 345566777777777777776 34433 4455566666777777777777766543110 0111112233455555555
Q ss_pred hHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHcCC
Q 003148 625 LGEALDLIKSMPVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELD--PEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 625 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 690 (844)
..+...+..+..-.| |...-..|...+...|+.+.|...+=.++..+ -++...--.|..++.-.|.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 555555555554445 33344455555666666666665555554432 2344455555555555553
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.80 E-value=0.34 Score=45.06 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=69.6
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 617 DLLGRAGLLGEALDLIKSM-P-VEP-----NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+-+.+.|++++|..-+..+ . ++| ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4466778888888777765 2 222 13344444556678899999999999999999998888899999999999
Q ss_pred CchHHHHHHHHHHhC
Q 003148 690 KWTNVARVRLQMKEQ 704 (844)
Q Consensus 690 ~~~~a~~~~~~m~~~ 704 (844)
++++|.+-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=0.4 Score=47.46 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred hcCChHHHHHHHHhC-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHHcCC
Q 003148 621 RAGLLGEALDLIKSM-------PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK---SGVHVLLSNIYASAGK 690 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 690 (844)
+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 345555555555544 122344333 4556666677777777776666655543 3456666777777777
Q ss_pred chHHHHHHHHHHhC
Q 003148 691 WTNVARVRLQMKEQ 704 (844)
Q Consensus 691 ~~~a~~~~~~m~~~ 704 (844)
-++|..+++...++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666554
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.61 E-value=1.3 Score=39.45 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=59.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKP--DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA 622 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 622 (844)
.....+.|++++|.+.|+.+...=..+ ....-..++.++...|++++|...+++.++.+.-.|+ ..|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 334455677777777777776631111 1134455666677777777777777777663333333 2344333333322
Q ss_pred CChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 623 GLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 623 g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...+ ..|..+ ..+-| .+....|...++++++.-|++.
T Consensus 96 ~~~~---~~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDE---GSLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhh---hHHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2211 111111 11111 1235678888888888888764
No 251
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=18 Score=41.43 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChH
Q 003148 275 LMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAR 322 (844)
Q Consensus 275 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 322 (844)
.++...|+.+.-.|++++|-.+.-.|...+..-|--.+..+...++..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 455566666666666666666666666656555655555555555443
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.9 Score=43.26 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=86.6
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH---HHHHHhcCCH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL---LAACQKHQNV 657 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l---l~~~~~~g~~ 657 (844)
.....|+..++...|+.... ..|+ ...-..|+..|...|+.++|..++..+|.+-...-|..+ +....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 45678899999999998877 3343 556677899999999999999999999765444444442 2222222222
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 658 DIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+. ..+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 2345556789999999999999999999999999877666554
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.31 E-value=4.5 Score=36.54 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChH
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAR 322 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 322 (844)
..++..+...+........++.+.+.+ ..+....+.++..|++.+ .+...+.++. ..+......++..+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344555555555555555666555554 245566677777776653 2333344332 122333333555555555555
Q ss_pred HHHHHHHHH
Q 003148 323 EALAILDEM 331 (844)
Q Consensus 323 ~A~~l~~~m 331 (844)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555444
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.19 E-value=0.56 Score=42.90 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCCcc
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD----IHGVSPQIV 610 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 610 (844)
..++..+...|++++|+.+.++++. ..|-. ..+..++.++...|+..+|.++|+.+.+ +.|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344455556666666666666666 44433 4566666666666666666666655432 245555543
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=23 Score=40.92 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=70.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHH----HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003148 178 CLINFYGECGDIVDGRRVFDEMSERNVVSWTSLI----CACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQ 253 (844)
Q Consensus 178 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 253 (844)
.-|++..+...++.|..+-..-.- |...-..+. +-+.+.|++++|...|-+-+.. +.| ..+|.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 345566666666667666654332 111222222 3345678888888888776532 222 33455555555
Q ss_pred CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
.+..--.+++.+.+.|+. +..--+.|+++|.|.++.+.-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555556667777777764 34445678889999988888888776655
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=23 Score=40.90 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 003148 106 YNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACT----KSSAFGEGVQVHGAIVKMGFDRDVFVENCLIN 181 (844)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 181 (844)
-..-|..+.+...+.-|+.+.+.- + .|..+...+.+.|+ +.|++++|..-+-+.+ |+-... .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH----HHHH
Confidence 445667777778888887765442 2 23334444444443 5778888776654444 221111 2344
Q ss_pred HHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHH
Q 003148 182 FYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELG 258 (844)
Q Consensus 182 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 258 (844)
-|....++..--..++.+.+ .+...-+.|+.+|.+-++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44444444444445554443 233345667788888888777666555433 2221 22355667777777777766
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003148 259 DRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD 302 (844)
Q Consensus 259 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 302 (844)
..+-....+ +..+...+ +-..|++++|.+.+..++-
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 654433221 23333333 3356789999999988874
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=92.68 E-value=0.59 Score=42.66 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=41.7
Q ss_pred hcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
..|++++|..+|+-+. .-|..-|..|...+...+++++|+..|......+ .-|...+......+...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4566666666665443 2234445555555555666666666665554422 11223333444445555555555555
Q ss_pred HHHhHh
Q 003148 596 FRSMTD 601 (844)
Q Consensus 596 ~~~m~~ 601 (844)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555544
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.39 E-value=5.4 Score=37.98 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=91.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMV 616 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 616 (844)
...||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+-|...-+ -.|+.. |.+|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DP-fR~L- 171 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDP-FRSL- 171 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCCh-HHHH-
Confidence 45677777777788888888888888887 56654 3444444455567888888776665544 233321 2211
Q ss_pred HHHH--hcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHH
Q 003148 617 DLLG--RAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK-------SGVHVLLSNIYAS 687 (844)
Q Consensus 617 ~~~~--~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 687 (844)
.+|. +.-+..+|..-+.+--.+.|..-|...+-.+.-- ++. -+..++++.+-..++ ..+|.-|+.-|..
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2232 2334556654443321233555566655444321 111 112333333322232 2578899999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 003148 688 AGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 688 ~g~~~~a~~~~~~m~~~ 704 (844)
.|..++|..+|+.....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999887654
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.39 E-value=11 Score=37.27 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 613 (844)
+..|-.=+..-.+.|++++|.+.|+.+..+ .|. ..+...++-++.+.+++++|+...++..+.++-.|++. |.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HH
Confidence 344444455556778888888888888863 232 24566666677788888888888888887666666643 33
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----------------
Q 003148 614 CMVDLLGRAGLLGEALDLIKSMP-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS----------------- 675 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----------------- 675 (844)
..+.+++ .|...+ ...|.. -...|...++.+++.-|++.
T Consensus 111 ~YlkgLs----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 111 YYLKGLS----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred HHHHHHH----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence 3344443 111110 000111 11233344444444444432
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.=..+++.|.+.|.|.-|..-++.|.+.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 23346788899999999999999999875
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.35 E-value=1.8 Score=47.40 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=81.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPD--SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLG 626 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 626 (844)
...|+++++.++.+.-. +-|. ..-...++.-+.+.|..+.|+++-+.-.. --++..+.|+++
T Consensus 272 v~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 34566776665554111 1111 23355666666677888887776543222 346667889999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 627 EALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 627 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.|.++.++.. +...|..|......+|+++.|+++++++ .-+..|+-+|...|+-+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9988877653 6778999999999999999999888875 346677778888888877766666666554
No 261
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=17 Score=41.53 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=82.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 003148 211 ICACARRDLPKEAVYLFFEMVEEGIKPN---SVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKC 287 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 287 (844)
|.-+.+.+.+++|++..+.-. |..|- .......|..+...|+++.|-...-.|... +..-|---+.-++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 455678889999998776543 33332 223455666676777777766655554322 222222223333333
Q ss_pred CCHHHHHHHHHhcCCC----CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 003148 288 GAVDTAKQLFGECKDR----NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCH 363 (844)
Q Consensus 288 g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 363 (844)
+.... ++.-++.. +...|..++..+.. .+ ..-|.+.+.. ..++...-..++++- .
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~------------~ 495 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISAT------------E 495 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhc------------c
Confidence 32221 11122221 23457777777766 22 2223333221 111211111111110 0
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCc
Q 003148 364 GYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTV 406 (844)
Q Consensus 364 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~ 406 (844)
..+.+. .-+..+.-.|+..|...+++++|..++-...++++
T Consensus 496 ~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 496 PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 111110 11122334489999999999999999988887544
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=1.3 Score=44.02 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=47.4
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-hHHHHHHHHHHHhcCCHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-DVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~ 659 (844)
.|++.+|..-|...++.|.-.+- ...+--|...+...|++++|...|..+ |-.|- +..+--|.......|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555555553311111 223334556666666666666665554 22221 2334444455566677777
Q ss_pred HHHHHHHHHhcCCCCC
Q 003148 660 AAYAAERITELDPEKS 675 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~ 675 (844)
|...++++.+--|+.+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 7777777777777654
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=1.2 Score=45.12 Aligned_cols=159 Identities=8% Similarity=-0.026 Sum_probs=115.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH----HHhcCCh
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL----LGRAGLL 625 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~----~~~~g~~ 625 (844)
-+|+..+|-..++++++. .+-|...+.-.=.+|...|+.+.-...++++.. ...||...|+.+=.+ +..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998883 344557888888899999999999999988875 346777666655444 4589999
Q ss_pred HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHHcCCchHHHHHHH
Q 003148 626 GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK----SGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
++|++.-++. .+.| |.-.-.++.......|+..+|.++.++--..-.+. .-.|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999987 6665 33344566667788899999999877654322211 1234566667888899999999998
Q ss_pred HHHhCCCccCCc
Q 003148 700 QMKEQGIRKLPG 711 (844)
Q Consensus 700 ~m~~~~~~~~~~ 711 (844)
.-.-+.+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555544
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.82 E-value=14 Score=36.48 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=108.2
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCC---H---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEKRD---V---SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVF 576 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~ 576 (844)
|-...|+.-++ -.+.|++++|.+.|+.+..+. . .+--.++-++-+.+++++|+..+++.+. .-|++ +-|
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhH
Confidence 33445555444 346899999999999998432 2 2334456677889999999999999888 44443 344
Q ss_pred HHHHHHHhc---c----CcHHHHHH---HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHH--H
Q 003148 577 VGVLTACSH---G----GLVNQGWH---LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVI--W 644 (844)
Q Consensus 577 ~~ll~a~~~---~----g~~~~a~~---~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~ 644 (844)
..-|.+.+. . .+...+.+ -|+.+++++ |+.. --.+|..-+.... |... =
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~E 170 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHE 170 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHH
Confidence 444444432 1 22333333 333333322 3311 1112222221110 1111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSG---VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+...-|.+.|...-|..-++.+++--|+.+. .+..+..+|...|..++|.+..+-+...
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 13345678889999999999999987666544 4567778899999999999988877654
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.80 E-value=4.9 Score=44.75 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=69.2
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCCcchHHH-HHHHHHhcCChHHHHHHHHhCC-CC-----CChHHHHHHHHHHHhcCCHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQIVHYGC-MVDLLGRAGLLGEALDLIKSMP-VE-----PNDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~eA~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 658 (844)
....+.+.++++.+.+. -|+...|.. -..++...|++++|++.|+++- .+ -....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34556666666666652 355333332 2344555667777777776541 01 12223334555566777888
Q ss_pred HHHHHHHHHHhcCCCCCchH-HHHHHHHHHcCCc-------hHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVH-VLLSNIYASAGKW-------TNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~m~~~ 704 (844)
+|...+.++.+.+.-....| ...+-.|...|+. ++|.+++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88888888888666544444 4556667788888 7777777766543
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.77 E-value=30 Score=41.73 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=54.4
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 003148 187 GDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYID 266 (844)
Q Consensus 187 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 266 (844)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34555555444443 223444444444555666665553 46666666666555431 11
Q ss_pred HhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHH
Q 003148 267 ELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEML 332 (844)
Q Consensus 267 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 332 (844)
+. ..+.--.-+|.++|+.++|.+.+ ...|+|.+|+.+..+|.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLS 992 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhc
Confidence 11 11222344677888888887654 45677888888877764
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.41 E-value=7.1 Score=43.53 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSIVFVGVL-TACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~e 627 (844)
....+.|.++++.+.+ .-|+..-|...- ..+...|++++|++.|+.......--|. ...+--+...+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3456778888888877 677776554433 3566778888888888865431111122 2223345666778888999
Q ss_pred HHHHHHhC-CCCCC-hHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 003148 628 ALDLIKSM-PVEPN-DVIWGSLLAAC-QKHQNV-------DIAAYAAERITE 669 (844)
Q Consensus 628 A~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~~~ 669 (844)
|.+.|.++ ..... ..+|.-+.++| ...|+. ++|...++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98888888 22222 33444444444 446766 666666666554
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.33 E-value=0.33 Score=31.17 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.12 E-value=2.4 Score=46.55 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=87.8
Q ss_pred HHhCCCchHHHHHHH-HHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHH
Q 003148 214 CARRDLPKEAVYLFF-EMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDT 292 (844)
Q Consensus 214 ~~~~g~~~~A~~l~~-~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 292 (844)
..-+++++++.++.+ .-.-..++ ..-...+++.+-+.|..+.|.++-.. + ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 344566666555543 11111111 22355666666666666666655322 1 123455667888998
Q ss_pred HHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCC
Q 003148 293 AKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLE 372 (844)
Q Consensus 293 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 372 (844)
|.++-++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.+...|+.+.-+++.......|-
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 888876665 455899999999999999999988887643 45555566666776666666555554442
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMS 402 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 402 (844)
+|.....+.-.|++++..+++.+-.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2444445555667766666665543
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.10 E-value=1.7 Score=42.84 Aligned_cols=111 Identities=10% Similarity=0.052 Sum_probs=84.0
Q ss_pred HHHHHHhcC--CCCceehHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC-----------
Q 003148 293 AKQLFGECK--DRNLVLCNTIMSNYVRL-----GLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLG----------- 354 (844)
Q Consensus 293 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 354 (844)
.++.|.... ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..+|..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 56777788887777654 556667778889999999999999999998775532
Q ss_pred -----ChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCC-HHHHHHHHhhcCC
Q 003148 355 -----DLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGK-QEMACRIFDHMSN 403 (844)
Q Consensus 355 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~m~~ 403 (844)
.-+.+..+++.|...|+.||-.+-..|++.+++.+. ..+..++.-.|++
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 235677888999999999999999999999988876 3455566666654
No 271
>PRK09687 putative lyase; Provisional
Probab=91.09 E-value=20 Score=36.78 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=32.4
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDSIVFVGVLTACS 584 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 584 (844)
+..+-...+.++++.|+.+....+..-+.++|...-...+.++.+.+ +..++...+..++. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444444555555554332222223333333333333333333322 12344444444442 334444444444444
Q ss_pred ccCc
Q 003148 585 HGGL 588 (844)
Q Consensus 585 ~~g~ 588 (844)
+.|.
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 4444
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.87 E-value=6.2 Score=42.68 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=66.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCh--HHHHHHHHHHHh
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP-V-EPND--VIWGSLLAACQK 653 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~-~p~~--~~~~~ll~~~~~ 653 (844)
.+...+-+.|+.+||++.+.+|.+++...........|+..|...+.+.++..++.+-. + -|.. ..|++.+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 45555668899999999999998744322234456678899999999999999988873 1 2433 355554444343
Q ss_pred cCC---------------HHHHHHHHHHHHhcCCCCCc
Q 003148 654 HQN---------------VDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 654 ~g~---------------~~~a~~~~~~~~~~~p~~~~ 676 (844)
-++ ...|.++..++.+.+|.-+.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 332 12356788999999987663
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.79 E-value=6.4 Score=40.49 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=82.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHhccCcHHHHHHHHHHhHh---hcCCCCCcchHHH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPD-----SIVFVGVLTACSHGGLVNQGWHLFRSMTD---IHGVSPQIVHYGC 614 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ 614 (844)
+|..++.-.+.++++++.|+...+--...+ -..+.+|.+.+....++++|..+..+..+ .+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355556666778889998888765221111 24678888888888899988877666543 2333322233333
Q ss_pred H-----HHHHHhcCChHHHHHHHHhC-------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 615 M-----VDLLGRAGLLGEALDLIKSM-------PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 615 l-----i~~~~~~g~~~eA~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
+ .-+|-..|++-+|.+.-++. +-+| .......+...|+..|+.|.|..-|+++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3 34566677777676666554 3333 233566778889999999999988888875
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.50 E-value=3.2 Score=35.99 Aligned_cols=50 Identities=26% Similarity=0.467 Sum_probs=22.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.+..|+++.|++.|.... ......||.-..++.-.|+.++|++-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444555544444332 23344444444444444444444444444443
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.80 E-value=0.56 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778889999999999999888754
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.49 E-value=11 Score=34.40 Aligned_cols=88 Identities=17% Similarity=0.038 Sum_probs=52.3
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
.-...++.+++..++..+.- +.|. .++-..-+..+.+.|++.+|..+|++. .-.|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33455677777777777765 5566 333334455667788888888888887 333444455666666655433233
Q ss_pred HHHHHHHHHhcCC
Q 003148 660 AAYAAERITELDP 672 (844)
Q Consensus 660 a~~~~~~~~~~~p 672 (844)
=....+++++..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3344555666555
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.15 E-value=1.2 Score=30.70 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
.|..+...|.+.|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466777778888888888888888887 667664
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.03 E-value=12 Score=39.76 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
-.+.+++.++.-.|+.++|.+..++|.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3455666677777777777777777766
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.93 E-value=0.66 Score=30.39 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.72 E-value=93 Score=40.90 Aligned_cols=307 Identities=12% Similarity=0.109 Sum_probs=164.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhc----CCCCc--chHHHHHHHHHhcCCHHHHHHHHhh-CCCCCccccccccccccccCC
Q 003148 380 TMIDMYMKCGKQEMACRIFDHM----SNKTV--VSWNSLIAGLIKNGDVESAREVFSE-MPGRDHISWNTMLGGLTQENM 452 (844)
Q Consensus 380 ~Li~~y~~~g~~~~A~~~f~~m----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 452 (844)
.|..+-.+|+.+..|...+++- .+.+. .-+-.+...|..-+++|....+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 3444556777777777777772 22111 2233334477777777766555542 22222 1223444566788
Q ss_pred hHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchh-HHhHHhhhHHhcCCHHHHHHHH
Q 003148 453 FEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQ-LATALVDMFARCGDPQRAMQVF 530 (844)
Q Consensus 453 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~k~g~~~~A~~~~ 530 (844)
+..|...|+.+.+. .|+ ..+++.++......+.++...-..+..... ..+... .++.-+.+--+.++++.-.+..
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 89999999988765 344 556776666555555555554433322222 122222 2233344446667777666665
Q ss_pred HhcCCCCHhHHHHH-HH-HHHhc--CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH--------
Q 003148 531 RRMEKRDVSAWTAA-IG-AMAME--GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRS-------- 598 (844)
Q Consensus 531 ~~~~~~~~~~~~~l-i~-~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~-------- 598 (844)
. .++..+|.+. +. ...+. .+.-.-.++.+.+.+.-+. =+.+|+..|.+..+.++.-+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 5666677665 22 22221 1211222334433332111 12344444333333322211
Q ss_pred --hHhhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----hHHHHHHHHHHHhcCCHHHHH
Q 003148 599 --MTDIHGVSPQIV------HYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-----DVIWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 599 --m~~~~~~~p~~~------~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~ 661 (844)
.....+..++.. .|..-...=....+..|-+--+++. ...|+ ..+|-.....++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111123334321 2222221111111222222222221 12322 348999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.+.-++.+..+ +..+.-.+....+.|+-..|..+.+...+..
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99888888774 5689999999999999999999999887653
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.60 E-value=17 Score=38.86 Aligned_cols=149 Identities=12% Similarity=0.019 Sum_probs=79.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCcHHHHHHHHHHhHh-hcCCCCCcch
Q 003148 536 RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP---DSIVFVGVLTACSHGGLVNQGWHLFRSMTD-IHGVSPQIVH 611 (844)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~ 611 (844)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+ ...-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888888899988888888887743222 223333344455566788888888877766 1111111111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCChHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 612 YGCMVDLLGRAGLLGEALDL-IKSMPVEPNDVIWGSLLAACQKH------QNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
...+...+.. ..+..... ........-..++..+...+... ++.+++...++++.++.|+....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000012333333333333 788899999999999999888888877766
Q ss_pred HH
Q 003148 685 YA 686 (844)
Q Consensus 685 ~~ 686 (844)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.53 E-value=0.81 Score=46.25 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=79.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
-.+-|.+.|.+++|+..|..... ..| +...|..-..+|.+..++..|+.-.+.+ .+.. -.-.|..-..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999998876 566 6788888888999999988887766554 2210 1123444444445568
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
+.++|.+-++.+++++|++. -|-..|+......|+.-+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 99999999999999999864 3444555555555554443
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.38 E-value=13 Score=38.54 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCc--HHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKPDSI--VFVGVLTACSHGGL--VNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
+.+...|+.+.+.|+..+.. ....+|..+..... +.++.++++.+.+ .|+++...+|..++-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 55677888888888877652 34444444433322 4578888888887 789988888876543
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.21 E-value=1.3 Score=28.35 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD 572 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 572 (844)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566777777777777777777777777 5554
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.14 E-value=3.8 Score=41.40 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=58.5
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChhHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLR-----QGIKPDSIVFVG 578 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 578 (844)
..++..++..+..+|+.+.+.+.+++... -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788889999999999998888773 3677899999999999999999999988765 466666655444
Q ss_pred HHH
Q 003148 579 VLT 581 (844)
Q Consensus 579 ll~ 581 (844)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.94 E-value=0.4 Score=43.66 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=61.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 003148 346 AVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESA 425 (844)
Q Consensus 346 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 425 (844)
++..+.+.+.......++..+.+.+...+..+.+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556667777777777777766667788899999999999888888888874433 3345677777888888888
Q ss_pred HHHHhhCCC
Q 003148 426 REVFSEMPG 434 (844)
Q Consensus 426 ~~~~~~m~~ 434 (844)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 888777654
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.59 E-value=3.7 Score=37.43 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..+++.+.++.++.-+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345667777777777777777777777777777777777777777777765543
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.43 E-value=22 Score=31.20 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=44.6
Q ss_pred hcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
.||++......+-.+.. +..-....+....+.|+-++-.+++.++.+. -+|+......+.+||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45555544444433322 2223344566667777777777777776642 366777777777788888888888887777
Q ss_pred hHh
Q 003148 599 MTD 601 (844)
Q Consensus 599 m~~ 601 (844)
+-+
T Consensus 146 ACe 148 (161)
T PF09205_consen 146 ACE 148 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.33 E-value=2.2 Score=43.32 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA- 622 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 622 (844)
..-|.+.|.+++|+..|...+. +.| |.+++..-..||.+...+..|..-...+.. .| ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999999888 788 889999999999999988888777766654 11 2234555554
Q ss_pred ------CChHHHHHHHHhC-CCCCChHH
Q 003148 623 ------GLLGEALDLIKSM-PVEPNDVI 643 (844)
Q Consensus 623 ------g~~~eA~~~~~~m-~~~p~~~~ 643 (844)
|...||.+-.+.. .++|+..-
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 4556666555554 56777543
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.26 E-value=88 Score=38.04 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhcc
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI--VFVGVLTACSHG 586 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~ 586 (844)
+|.+..+.+...+.+++|.-.|+..-+- .--+.+|...|++.+|+.+..+|.. .-|.. +-..|.+-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 3333444444556666666666544321 1234556666666666666655432 11221 123455555666
Q ss_pred CcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 587 GLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
++.-+|-++...... . +.--+..|+++..+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 666666555544332 1 223455666666677766665554
No 291
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.13 E-value=7.2 Score=34.20 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-cCCCCCc-hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKH---QNVDIAAYAAERITE-LDPEKSG-VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+--.+..++... .++.+++.+++.+++ -.|+... ....|+-.+++.|+|++++++.+...+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333444455555443 356677778888876 4444332 3345566678888888888888777653
No 292
>PRK10941 hypothetical protein; Provisional
Probab=86.11 E-value=4.6 Score=40.91 Aligned_cols=62 Identities=23% Similarity=0.150 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+--.+-+|.+.|.+..|..-++.-.++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35566678899999999999999999999999988888999999999999999988877665
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.86 E-value=2.7 Score=30.40 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
.+.-++.+.|+++.|.+..+.+++++|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355578899999999999999999999986443
No 294
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.05 E-value=5 Score=29.02 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 003148 678 HVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGY 753 (844)
Q Consensus 678 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 753 (844)
...++-.+.+.|++++|.+..+.+.+. +|...+.......+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999998874 45555555555566777877773
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.78 E-value=4.9 Score=36.02 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=45.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..++.++++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37788888888888888899988888888888999999999999998887765
No 296
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.62 E-value=2.5 Score=40.17 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=56.2
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 659 (844)
|-..|.++-|+--|.+... +.|+ +..||.|.--|...|+++.|.+.|+.. .+.|.-. +...=.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 4445666666666666655 6676 566777776777778888888887776 5555321 11111112333577788
Q ss_pred HHHHHHHHHhcCCCCC
Q 003148 660 AAYAAERITELDPEKS 675 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~ 675 (844)
|.+-+-+-.+-+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 8877777777777775
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=34 Score=33.34 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=16.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...+++.+|+.+++++....-+|+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345778888888888876554443
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.76 E-value=6.5 Score=36.53 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC----chHHHHHHHHHHh
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNIYASAGK----WTNVARVRLQMKE 703 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~~ 703 (844)
+++|+.-+++++.++|+...++..++++|...|. -.+|.+.|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 5677788888899999999999999999987664 3355555555543
No 299
>PRK12798 chemotaxis protein; Reviewed
Probab=83.70 E-value=67 Score=34.43 Aligned_cols=206 Identities=15% Similarity=0.187 Sum_probs=132.7
Q ss_pred cCCHHHHHHHHHhcCC----CCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHH
Q 003148 520 CGDPQRAMQVFRRMEK----RDVSAWTAAIGAMA-MEGNGEQAVELFNEMLRQGIKPDS----IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 590 (844)
.|+.++|.+.+..+.. +....+-+|+.+-. ...++.+|+++|++..- .-|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999988873 34566777777644 45689999999999876 56654 33444555678899999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYG-CMVDLLGRAG---LLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
++..+-......|...|=...|. -++..+.+.+ ..+.-.+++..|.-.-...+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777666666544333 2334444433 3445555566653222345788888888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHc-----CCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYASA-----GKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSML 741 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l 741 (844)
++.+...+ ..-...+.+|... .+.+++.+.+..+... +.+|.-..+....
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 99987443 3334444455332 3455555555443322 2355555565555
Q ss_pred HHHHHHHHHcC
Q 003148 742 REMNCRLRDAG 752 (844)
Q Consensus 742 ~~l~~~~~~~g 752 (844)
..+-..+.+..
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 55666665543
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.45 E-value=0.9 Score=29.30 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=8.2
Q ss_pred cchHHHHHHHHHhcCChHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA 628 (844)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444443
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.25 E-value=2.5 Score=26.84 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD 572 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 572 (844)
.|..+...|.+.|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 455666677777777777777777776 5554
No 302
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=83.00 E-value=34 Score=36.48 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSNK---TVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ 449 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 449 (844)
..|+.-|.-.|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-..-+.++++.-....+|-|.|-.||.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 46788889999999999999987764 456788888888888887777777777666677777777777654
No 303
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.68 E-value=2.2 Score=45.68 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEPNDVIWGSLL-AACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
-+...+.++.|..++.++ .++||...|-+.- .++.+.+++..|..=+.++++++|.....|+.-+.++...+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344556666777776666 6677766555544 56777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 003148 696 RVRLQMKE 703 (844)
Q Consensus 696 ~~~~~m~~ 703 (844)
..++..+.
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88876654
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.45 E-value=32 Score=31.90 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 003148 124 SLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDV-FVENCLINFYGECGDIVDGRRVFDEMSER 202 (844)
Q Consensus 124 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 202 (844)
+..+.+.+.+++|+...+..+++.+.+.|.+..- .+++..++-+|. .+...|++.-. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHH
Confidence 4445555667777777777777777777665433 233344433333 33333333221 112222222222222
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 003148 203 NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDE 267 (844)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 267 (844)
=...+..++..+...|++-+|+++.+..... +...-..++.+..+.++...--.++....+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224566677777788888888777664221 223334555555555555444444444433
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.16 E-value=43 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVF 429 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 429 (844)
..+++.+...|++-+|.+..+....-+...-..++.+-.+.+|...-..+|
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 456667777888888888877765544444455555555555544433333
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.32 E-value=50 Score=31.32 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHCCCCCChhHHH--HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHH-----HHHHHHhcCChHHH
Q 003148 556 QAVELFNEMLRQGIKPDSIVFV--GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGC-----MVDLLGRAGLLGEA 628 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 628 (844)
+.....+++....-.....++. .+...+...|++++|..-++.... .|.-+.+.. |..+....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555555522111112222 233456778888888888876654 133333333 44567788899999
Q ss_pred HHHHHhCCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 629 LDLIKSMPVEPNDV--IWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 629 ~~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
+..++...- ++-. .-..-..++...|+-++|+..|+++++.++++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 998887531 1111 11222346778889999999999998887544
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.16 E-value=37 Score=36.17 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDP----EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+|..+...++++|+++.|...+.++.+..+ ..+.....-+......|+-++|.+.++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999998653 24567777889999999999999998888773
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.83 E-value=7.7 Score=36.88 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=54.7
Q ss_pred HHhcCChHHHHHHHHhCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCch
Q 003148 619 LGRAGLLGEALDLIKSMPVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE----KSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 692 (844)
..|.|+ ++|.+.|-.+.-.| +....-..+..+....|.++++..+-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344444 56777777773333 3444445556666678999999999999986443 5678999999999999999
Q ss_pred HHH
Q 003148 693 NVA 695 (844)
Q Consensus 693 ~a~ 695 (844)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.75 E-value=1.2e+02 Score=35.38 Aligned_cols=335 Identities=10% Similarity=-0.011 Sum_probs=162.6
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhC-CCchhhHHHHHHHHHHHcCCHH
Q 003148 314 NYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNG-LEGWDSICNTMIDMYMKCGKQE 392 (844)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~ 392 (844)
...+.|++.++.++..++....+ .....|..+.... +.. ...++-..+.+.. .+.....-..-+..+.+.+++.
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l---~~~-~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL---MNQ-PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc---ccC-CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 35677888888777776643222 2222333332221 111 2235555555543 3334445555566666777777
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccCh
Q 003148 393 MACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDR 472 (844)
Q Consensus 393 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 472 (844)
.....+..- ..+...-.....+....|+.++|......+--. ..-..+..-.+|....+.|...+.
T Consensus 117 ~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-------------g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 117 GLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-------------GKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------------CCCCChHHHHHHHHHHHcCCCCHH
Confidence 777733222 234444455666677777766554444332110 001123444455555544433333
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHH--h
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMA--M 550 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~ 550 (844)
..+.-+..+ ...|+...+..+...+- .........++..+.+.. .+..++.... ++...-...+-++. .
T Consensus 183 d~w~R~~~a-l~~~~~~lA~~l~~~l~----~~~~~~a~a~~al~~~p~---~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 183 AYLERIRLA-MKAGNTGLVTYLAKQLP----ADYQTIASALIKLQNDPN---TVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhcC----hhHHHHHHHHHHHHHCHH---HHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 333332222 23455555555554431 111223344444443333 3333333221 12111111112222 2
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHH
Q 003148 551 EGNGEQAVELFNEMLRQG-IKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 627 (844)
..+.+.|..++.+..... ..+.. .....+.......+..+++...++.... ...+.....-.+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 456688888888775433 33333 2233333333333235667777765543 11233334444555558889998
Q ss_pred HHHHHHhCCCC-CChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 628 ALDLIKSMPVE-PNDVIWGS-LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 628 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
+...|..|+.. -+...|.- +..+....|+.++|...++++.. +. .+|-.|+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa 384 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAA 384 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHH
Confidence 88888888321 12233433 34455668999999999888744 22 35655543
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.61 E-value=20 Score=37.08 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhCCCCChhHHH
Q 003148 157 GVQVHGAIVKMGFDRDVFVEN 177 (844)
Q Consensus 157 a~~~~~~~~~~g~~~~~~~~~ 177 (844)
...+++.+.+.|+..+.+++-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 334455555555554444433
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.66 E-value=2.8 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCCchHHHHHHH
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
.....|+.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778889999999999988764
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.64 E-value=3.9 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
+++.|...|...|++++|+..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555543
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.60 E-value=28 Score=32.84 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEKRD------VSAWTAAIGAMAMEGNGEQAVELFNEML 565 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 565 (844)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455556666666666666665554321 2234444555555555555555544443
No 314
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.20 E-value=3.7 Score=24.90 Aligned_cols=30 Identities=33% Similarity=0.205 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 644 WGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 644 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
|..+...+...|+++.|...+++++++.|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444445555556666666666666555553
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.79 E-value=7.9 Score=39.18 Aligned_cols=61 Identities=25% Similarity=0.251 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+...++.++...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|.+.++.+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555666667777777777777777777777777777777777777777777777765
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.21 E-value=1.4e+02 Score=34.72 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---CCCC-chHH-----HHHHHHHHcCCchHHHHHHHHHH
Q 003148 647 LLAACQKHQNVDIAAYAAERITELD---PEKS-GVHV-----LLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
+++.-.-.|++.+.......+..+- |+.. ..|. .+.+.|...|+.++|.+.+....
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3333333677777665555555432 2222 2332 45566788899999988887654
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.06 E-value=14 Score=34.90 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC------cc
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ------IV 610 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~ 610 (844)
..|..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...|++..+..+..++........| ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35677888899999999999999999997777776 45778888999999999999998887662211111 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
.|..+. +...|++.+|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333332 34578999998888776
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.95 E-value=87 Score=32.13 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=29.1
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCh
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKR---DVSAWTAAIGAM---AMEGNGEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 573 (844)
++...+.++.+++.+++.+|... ....|...+..+ ..+ ....|...++.++...+.|..
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44444466666666666666521 223444444443 222 234555666665554444443
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.38 E-value=1.3e+02 Score=33.79 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=85.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHH
Q 003148 405 TVVSWNSLIAGLIKNGDVESAREVFSEMPGRD---HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASA 481 (844)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 481 (844)
+..+|..-+.--.+.|+.+...-+|+....+- ...|--.+.-....|+.+-|-.++....+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34567777777777777777777777665431 112333332223336666665555544332222111111111111
Q ss_pred ccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHH---HHHHhcC--CCCHhHHHHHHHH-----HHhc
Q 003148 482 CGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAM---QVFRRME--KRDVSAWTAAIGA-----MAME 551 (844)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~---~~~~~~~--~~~~~~~~~li~~-----~~~~ 551 (844)
+-..|+...|+.+++.+...- +.-+.+-.--+.+-.+.|+.+.+. .++.... +.+....+.+..- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 234567777777777766543 222222233345555666666666 3333222 1122222222221 2224
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHh
Q 003148 552 GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACS 584 (844)
Q Consensus 552 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 584 (844)
++.+.|..++.+|.+ +.|+. .-|..++..+.
T Consensus 455 ~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 455 EDADLARIILLEAND--ILPDCKVLYLELIRFEL 486 (577)
T ss_pred cCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHH
Confidence 566667777777666 44444 44555554443
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.65 E-value=1.5e+02 Score=34.07 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH-----Hh--cCCh
Q 003148 553 NGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLL-----GR--AGLL 625 (844)
Q Consensus 553 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~ 625 (844)
+.+.|..++++..+.| .|-..--...+..+.. +.++.+.-.+..+.+ .|.+-....-..+.+.. .+ ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccch
Confidence 5666777777776666 3333222333333444 555555555554444 23222111111111111 11 1245
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-C--CchHHHHHH
Q 003148 626 GEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA-G--KWTNVARVR 698 (844)
Q Consensus 626 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~ 698 (844)
+.+..++.+...+-+......|...+.. ..+.+.|...+.++.+.. +.....|+.++-+. | .+..|.+++
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 5566666655333344444444433322 235677777777666655 55666777766432 1 157777777
Q ss_pred HHHHhC
Q 003148 699 LQMKEQ 704 (844)
Q Consensus 699 ~~m~~~ 704 (844)
+...+.
T Consensus 533 ~~~~~~ 538 (552)
T KOG1550|consen 533 DQASEE 538 (552)
T ss_pred HHHHhc
Confidence 776654
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.63 E-value=1.8 Score=39.24 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHH
Q 003148 245 VISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREA 324 (844)
Q Consensus 245 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 324 (844)
+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777788887776667788899999999999888888888773332 5556677777778888888
Q ss_pred HHHHHHHH
Q 003148 325 LAILDEML 332 (844)
Q Consensus 325 ~~l~~~m~ 332 (844)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 87777654
No 322
>PRK09687 putative lyase; Provisional
Probab=76.60 E-value=96 Score=31.88 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=42.2
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACS 584 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 584 (844)
++..+-..-+.++++.|+.+....+.+.+..++ .....+.++...|.. +|+..+.++.+ -.||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 345555556666666666433333333333333 233566777777775 67778887776 3456655555555543
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.40 E-value=22 Score=38.05 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=75.5
Q ss_pred hcCChHHHH-HHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 550 MEGNGEQAV-ELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 550 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
..|+...|- +++.-+....-.|+.+.+.+.+ ..+.|.++.+.+.+....+ -+.....+..|++.-+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 456666554 4555555555566666555444 5677888888887776654 2334455667777777778888888
Q ss_pred HHHHHhC---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 629 LDLIKSM---PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 629 ~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..+-..| .++ +..+...........|-++++.-.+++++.++|..
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8877766 222 33333333344556677777777777777776643
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.40 E-value=1.6e+02 Score=34.31 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=16.4
Q ss_pred HHhcCChHHHHHHHHhCCCCC
Q 003148 619 LGRAGLLGEALDLIKSMPVEP 639 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p 639 (844)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 568999999999999998888
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.37 E-value=4.6 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=13.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
..++.+.|+.++|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444455555555555555555554
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.20 E-value=4 Score=25.90 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
+|..+...|.+.|+.++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777777766
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.16 E-value=1e+02 Score=35.39 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=78.7
Q ss_pred hcCChHHHHHHHHHHHH-------CCCCCChhHHHHHHHHHhccC-----cHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 550 MEGNGEQAVELFNEMLR-------QGIKPDSIVFVGVLTACSHGG-----LVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
...+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++....+ .| .|+.... +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHH--HHH
Confidence 34455555555555544 44 2234444555555432 45557777766655 22 2222222 222
Q ss_pred HHH--h-cCChHHHHHHHHhCC--CCCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-C
Q 003148 618 LLG--R-AGLLGEALDLIKSMP--VEPNDVIWGSLLAACQ--KHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA-G 689 (844)
Q Consensus 618 ~~~--~-~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 689 (844)
+|. . -.+...|.++|..+. -.++...|.++...+. ...+.+.|...+.++-+.+ ++.+...++..+... +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 222 2 124567777777762 2233333333322222 2347788888888888877 334455555554333 8
Q ss_pred CchHHHHHHHHHHhCCCc
Q 003148 690 KWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 690 ~~~~a~~~~~~m~~~~~~ 707 (844)
+++.+.-.+..+++.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 888888877777776643
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.03 E-value=31 Score=38.31 Aligned_cols=147 Identities=20% Similarity=0.141 Sum_probs=95.6
Q ss_pred cCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
.|+++.|..++..++++ .-+.++.-+...|..++|++ +.||.. -|- ...+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFe----lal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFE----LALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhh----hhhhcCcHHHHHHHHHh
Confidence 46777777777666632 23344555566677766665 334432 222 22367888888887655
Q ss_pred hHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 599 MTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 599 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
.. +..-|..|.++...+|++..|.+.|.+.. -|..|+-.+...|+-+.-..+...+.+-...|...
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF- 728 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF- 728 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH-
Confidence 43 34568889999999999999999988763 25667777777787775555555555544444322
Q ss_pred HHHHHHHHHcCCchHHHHHHHH
Q 003148 679 VLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
..|...|+++++.+++..
T Consensus 729 ----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHcCCHHHHHHHHHh
Confidence 346678999999888754
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.69 E-value=46 Score=30.84 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 379 NTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 379 ~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
.+|.-+-.|.|++..|.+.|..+.+
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444556666666666665544
No 330
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.67 E-value=62 Score=31.84 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 003148 677 VHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
.|+...-+|....++..|.+.++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhc
Confidence 45666666666667777766664
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.43 E-value=54 Score=29.62 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=34.5
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAAC 651 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~ 651 (844)
.++.+++..+++.|.- +.|+ .+.-..-+..+.+.|+++||..+|++..-.+ ....-.+|+..|
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 5666666666666654 4555 2222333445667777777777777773222 323333444444
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.31 E-value=22 Score=36.13 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003148 502 GIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KR--------DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD 572 (844)
Q Consensus 502 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 572 (844)
|......+...+++.-....++++++..+-.+. .+ ...+|--++. .=++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 444444555566666666778888888776665 22 2334433333 3367799999998899999999
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..++..++..+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999998888777665
No 333
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.04 E-value=1.3e+02 Score=32.83 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=60.8
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC----CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcC
Q 003148 180 INFYGECGDIVDGRRVFDEMSER----NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM--VCVISACAKLQ 253 (844)
Q Consensus 180 i~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~ 253 (844)
+...++.|+.+.+..+++.-... +..-++.|. ..+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHH-HHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 33445556666655555543221 111122222 22334443 444555555655543221 12333334455
Q ss_pred CchHHHHHHHHHHHhCCCcchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCCcee---hHHHHHHHHHcCChHHHHHHH
Q 003148 254 NLELGDRVCAYIDELGMKANAL--MVNALVDMYMKCGAVDTAKQLFGECKDRNLVL---CNTIMSNYVRLGLAREALAIL 328 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~l~ 328 (844)
+.+.++ .+.+.|..++.. ...+-+...+..|+.+-+..+++.-..++... ..+.+...+..|+. ++.
T Consensus 147 ~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv 218 (413)
T PHA02875 147 DIKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIV 218 (413)
T ss_pred CHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHH
Confidence 544333 333344332211 11222333445566665555555433333221 22333333444443 233
Q ss_pred HHHHhcCCCCCh
Q 003148 329 DEMLLHGPRPDR 340 (844)
Q Consensus 329 ~~m~~~g~~p~~ 340 (844)
+-+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 444455655553
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.59 E-value=27 Score=28.73 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=37.6
Q ss_pred HhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 633 KSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 633 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
-.+.+-|++.+..+-+.||++-+|+..|.++++-+...-.++...|-.+
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 3446789999999999999999999999999998775444343445443
No 335
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=44 Score=32.78 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=63.1
Q ss_pred HHHHHhcCChHHHHHHHHhC---------CCCCChHHHHHH--------H---HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 616 VDLLGRAGLLGEALDLIKSM---------PVEPNDVIWGSL--------L---AACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m---------~~~p~~~~~~~l--------l---~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+-+.+.|+++||..-+.++ .-+|...-|--| + ..+...|++-++++....++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34456677777766655443 335554444332 2 223456899999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|..-+.+.+..=+.++|..-+.+..+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999998888777777888877777653
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.71 E-value=17 Score=29.93 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHH-HhCCCCChhHHHHHHH
Q 003148 120 VEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIV-KMGFDRDVFVENCLIN 181 (844)
Q Consensus 120 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~ 181 (844)
-++.+-+..+....+.|++....+.|++|.+.+++..|.++++-+. +.|. +...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3566667777778889999999999999999999999999998776 4442 4446665553
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.61 E-value=18 Score=38.71 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=82.4
Q ss_pred HhcCCHHHHHH-HHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 003148 518 ARCGDPQRAMQ-VFRRME----KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQG 592 (844)
Q Consensus 518 ~k~g~~~~A~~-~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 592 (844)
...|++..|-+ +|..+. .|+.+...+.| +...|+++.+...+...... +.....+...++...-..|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34677776644 444443 34444444333 56779999999888765442 344557888889999999999999
Q ss_pred HHHHHHhHhhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChHHHHHHHHH--HHhcCC
Q 003148 593 WHLFRSMTDIHGVS-PQIVHYGCMVDLLGRAGLLGEALDLIKSM-PV-EPNDVIWGSLLAA--CQKHQN 656 (844)
Q Consensus 593 ~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~--~~~~g~ 656 (844)
...-+-|.. ..++ |.+.+.. ...--..|-+++|.-.+++. -+ .|...-|-.+++. |...|+
T Consensus 377 ~s~a~~~l~-~eie~~ei~~ia--a~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLS-NEIEDEEVLTVA--AGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhc-cccCChhheeee--cccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 999888876 3333 3322211 11122346788888888887 33 3455567666654 344443
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.52 E-value=13 Score=37.74 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=64.8
Q ss_pred hcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCC--CCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCC
Q 003148 58 QGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNET--SATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGIL 135 (844)
Q Consensus 58 ~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 135 (844)
.|..........++..-....+ ++++...+-.+..+.-. .++... .+.++-+. .-++++++.++..-...|+.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~---idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREE---IDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccc---hhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccc
Confidence 3444455555555555544444 77776666544321100 122111 12233333 34567888888888888888
Q ss_pred CCcccHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 003148 136 PDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMG 168 (844)
Q Consensus 136 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 168 (844)
||.+++..++..+.+.+++..|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777777654
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=25 Score=38.95 Aligned_cols=100 Identities=16% Similarity=0.057 Sum_probs=63.3
Q ss_pred HhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 003148 285 MKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHG 364 (844)
Q Consensus 285 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 364 (844)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |.+|+-.+...|+-+.-..+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 4567777777765443 3556688888888888888888888877654 4555556666666554444444
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhc
Q 003148 365 YVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHM 401 (844)
Q Consensus 365 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 401 (844)
...+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 44444432 33344566677777777776654
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.02 E-value=7.9 Score=25.80 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666777777776666554
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.62 E-value=4.3 Score=25.42 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.04 E-value=85 Score=29.18 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=75.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc-hHHHH--HHHHHhcC
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV-HYGCM--VDLLGRAG 623 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 623 (844)
+++.+..++|+.-|..+.+.|...-.+ ...-........|+...|...|+++-.+. -.|.+. -..-| ..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 356677888888888887766543322 22233345667788888888888876622 222221 11111 23456678
Q ss_pred ChHHHHHHHHhCC--CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 624 LLGEALDLIKSMP--VEP-NDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 624 ~~~eA~~~~~~m~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
-+++.....+-+. -.| ....-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888777777662 222 233445666677788999999988888876
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.44 E-value=32 Score=28.64 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=34.9
Q ss_pred HhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 633 KSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 633 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
-.+.+-|++.+..+.+.||++-+++..|.++++-+...-.+....|-.+
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 3446779999999999999999999999999998887555444355544
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.94 E-value=1.2e+02 Score=30.17 Aligned_cols=218 Identities=17% Similarity=0.259 Sum_probs=116.5
Q ss_pred ccccccccCChHHHHHHHHHHHh---CCcc--cChhhHHhHHHHccccCchHHHHHHHHHHHHh-----CCCCchhHHhH
Q 003148 443 MLGGLTQENMFEEAMELFRVMLS---ERIK--VDRVTMVGVASACGYLGALDLAKWIYAYIEKN-----GIHCDMQLATA 512 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~ 512 (844)
||..+.+.|++++.++.+.+|.. ..+. -...+.++++.-.+...+.+.-..+++-..+. +-..-..+-+.
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 45555555666666655555532 1111 12344555555555444544444444332211 11111223345
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC--------CC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK--------RD-------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFV 577 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 577 (844)
|...|...|++..-.+++.++.+ .| ...|..=|..|....+-.+-..++++.+.-.-..-.....
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 66667777777777777766541 11 2356666777888888888888888877632222233455
Q ss_pred HHHHHHh-----ccCcHHHHHHHHHHhHhhcCCC--CC---cchHHHHHHHHHhcCChHHHHHHHHh--C-CCC--CChH
Q 003148 578 GVLTACS-----HGGLVNQGWHLFRSMTDIHGVS--PQ---IVHYGCMVDLLGRAGLLGEALDLIKS--M-PVE--PNDV 642 (844)
Q Consensus 578 ~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~---~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~--p~~~ 642 (844)
.++.-|. +.|.+++|..-|-++-+.|.-. |. ..-|-.|.+++.++|-- -|+. + |.+ |...
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIl 305 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEIL 305 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHH
Confidence 6677665 5688888876555554434322 32 22355667777777621 1111 1 333 4455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITEL 670 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 670 (844)
....|+.+|..+ ++. .|++++..
T Consensus 306 AMTnlv~aYQ~N-dI~----eFE~Il~~ 328 (440)
T KOG1464|consen 306 AMTNLVAAYQNN-DII----EFERILKS 328 (440)
T ss_pred HHHHHHHHHhcc-cHH----HHHHHHHh
Confidence 778888888654 333 34555543
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.93 E-value=14 Score=36.95 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 644 WGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 644 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+-....|...|++.+|.++.++++.++|-+...+-.|.++|+..|+--++.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 334456788999999999999999999999999999999999999999888888888865
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.87 E-value=1.8e+02 Score=32.05 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHhcC
Q 003148 774 SHHSEKLAMAFGLIS 788 (844)
Q Consensus 774 ~~h~e~la~~~~~~~ 788 (844)
+.|-|+|+.-|+.-.
T Consensus 429 ~sl~ekl~~kfk~sk 443 (711)
T COG1747 429 VSLEEKLAVKFKASK 443 (711)
T ss_pred cChHHHHHHHhhcch
Confidence 567788888887643
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.79 E-value=28 Score=32.98 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=34.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 616 VDLLGRAGLLGEALDLIKSM-PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..++.+.+.++.|++-..+. .+.|... ..-.-..+|.+...++.|+.-++++++++|..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 34445555555555555444 3333211 11111235666678888999999999998865
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.59 E-value=10 Score=35.23 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccC
Q 003148 554 GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGG 587 (844)
Q Consensus 554 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 587 (844)
+++|+.-|++.+. +.|+. .++..+..++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 4566677777777 88887 67878877776543
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.45 E-value=25 Score=34.38 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 643 IWGSLLAACQKHQNVDI-------AAYAAERITELDPE------KSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.+.-+.+.|+..|+-+. |...++++++.+.. ......++|.++.+.|+.++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 55556666777777544 44555555543322 23466789999999999999999999987653
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.26 E-value=2.3e+02 Score=33.03 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=84.2
Q ss_pred CCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHH-cCCCchHHHHHHHHHHhCCCCCCcc-
Q 003148 62 HKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYS-CIGLGVEAISLYVELAGFGILPDKF- 139 (844)
Q Consensus 62 ~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~- 139 (844)
.++.-|-.||.+-.+| ++.+.+-|. -.|.....++-.+...+. ...++++|...+.+.....-+++..
T Consensus 28 ~~l~~Y~kLI~~ai~C-----L~~~~~~~~-----l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKC-----LEAVLKQFK-----LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHhccCC-----CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3445555565555544 333333222 112223444444555544 4566777777766654332221111
Q ss_pred ----cHHHHHHHHhcCCChHHHHHHHHHHHHhC--CC--CChhHHHHH-HHHHHhcCChHHHHHHHhhcCC-------CC
Q 003148 140 ----TFPFVLNACTKSSAFGEGVQVHGAIVKMG--FD--RDVFVENCL-INFYGECGDIVDGRRVFDEMSE-------RN 203 (844)
Q Consensus 140 ----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~L-i~~y~~~g~~~~A~~~f~~m~~-------~~ 203 (844)
.-..+++.+.+.+... |....+..++.- .. +-...+.-+ +..+...++...|.+.++.+.. +-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 1112334444443333 666666655431 11 111222222 2222233667767776665532 11
Q ss_pred cccHHHHHHHH--HhCCCchHHHHHHHHHHHcCC---------CCCcchHHHHHHHHH--hcCCchHHHHHHHHH
Q 003148 204 VVSWTSLICAC--ARRDLPKEAVYLFFEMVEEGI---------KPNSVTMVCVISACA--KLQNLELGDRVCAYI 265 (844)
Q Consensus 204 ~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~---------~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~ 265 (844)
+...-.++.+. .+.+..+++++.++++..... .|-..+|..+++.++ ..|+++.+.+.+..+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22233333332 244556666666666633221 223334555555554 335544555444433
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.89 E-value=35 Score=28.32 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003148 256 ELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHG 335 (844)
Q Consensus 256 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 335 (844)
++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||++.|-++-.. +.|..+++..-+.+|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4455555544443321 233333344556778999999999999999999999888654 6677777777777777765
Q ss_pred CCCChhhH
Q 003148 336 PRPDRVTM 343 (844)
Q Consensus 336 ~~p~~~t~ 343 (844)
.|...+|
T Consensus 99 -~p~lq~F 105 (115)
T TIGR02508 99 -DPRLQTF 105 (115)
T ss_pred -CHHHHHH
Confidence 3333333
No 352
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.03 E-value=1.9e+02 Score=31.63 Aligned_cols=197 Identities=12% Similarity=0.093 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCCcch--hhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcc---cHHHHHHHHHcCCCchHHHHH
Q 003148 51 PHCHILKQGLGHKPSY--ISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLF---MYNSLIRGYSCIGLGVEAISL 125 (844)
Q Consensus 51 ~~~~~~~~g~~~~~~~--~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~ 125 (844)
+-..+++.|..++... ..+.+...++.|+ .+-+..+++ ....++.. .++ .+...++.|+.+.+..+
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~---~~~v~~Ll~-----~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~L 87 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRD---SEAIKLLMK-----HGAIPDVKYPDIES-ELHDAVEEGDVKAVEEL 87 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHh-----CCCCccccCCCccc-HHHHHHHCCCHHHHHHH
Confidence 3445566777665432 4566777777787 776666665 33323221 223 34444566776654444
Q ss_pred HHHHHhCCCCCC----cccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhc
Q 003148 126 YVELAGFGILPD----KFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVF--VENCLINFYGECGDIVDGRRVFDEM 199 (844)
Q Consensus 126 ~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m 199 (844)
+ ..|...+ ..-.+ .+...+..|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 88 l----~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 88 L----DLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred H----HcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 4 3332221 11122 233334455543 455556667655432 1233455566778887777777654
Q ss_pred CC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH---HHHHHHHHhcCCchHHHHHHHHHHHhCCCcc
Q 003148 200 SE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM---VCVISACAKLQNLELGDRVCAYIDELGMKAN 273 (844)
Q Consensus 200 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 273 (844)
.. +|..-++.|..+ +..|+ .++.+.+.+.|..|+...- .+++...+..|+.+ +.+.+++.|..++
T Consensus 159 ~~~~~~d~~g~TpL~~A-~~~g~----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 159 ACLDIEDCCGCTPLIIA-MAKGD----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 43 333344444433 33454 3455556677777664432 23444344455543 4455556676665
Q ss_pred h
Q 003148 274 A 274 (844)
Q Consensus 274 ~ 274 (844)
.
T Consensus 230 ~ 230 (413)
T PHA02875 230 I 230 (413)
T ss_pred h
Confidence 3
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.68 E-value=2.6e+02 Score=33.14 Aligned_cols=182 Identities=16% Similarity=0.156 Sum_probs=90.4
Q ss_pred hcCCHHHHHHHHHhcC----CCC-------HhHHHHHHHHH-HhcCChHHHHHHHHHHHHCC----CCCChhHHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRME----KRD-------VSAWTAAIGAM-AMEGNGEQAVELFNEMLRQG----IKPDSIVFVGVLTA 582 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~----~~~-------~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a 582 (844)
...++++|..++.+.. .++ ...|+++-... ...|++++|+++.+...+.= ..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4566777776665543 221 12466554332 34577788888777766521 11222344455556
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHH-----HHHHhcCChH--HHHHHHHhC-----CCCCC----hHHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMV-----DLLGRAGLLG--EALDLIKSM-----PVEPN----DVIWGS 646 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~--eA~~~~~~m-----~~~p~----~~~~~~ 646 (844)
..-.|++++|..+..+..+ ..-.-+..++...+ ..+-..|+.. +.+..|... +-+|- ..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 6667888888877776655 22223333333222 2244556322 222222222 11221 123333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 647 LLAACQKHQNVDIAAYAAERITE----LDPEKSG---VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.++.+ ++.+...+...++ ..|..-. .+..|+.++...|+.++|......+...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444333 4444444444333 2222211 1236777788888888888777777654
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.03 E-value=42 Score=27.85 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003148 153 AFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 153 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (844)
..++|..|-+.+...+- ....+--.-++.+...|++++|..+.+.+..||...|-+|-.+ +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 35566666666655442 1333333445567789999999999999999999999887654 56666667777777766
Q ss_pred cC
Q 003148 233 EG 234 (844)
Q Consensus 233 ~g 234 (844)
+|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 65
No 355
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.77 E-value=1.6e+02 Score=30.24 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHh
Q 003148 415 GLIKNGDVESAREVFS 430 (844)
Q Consensus 415 ~~~~~g~~~~A~~~~~ 430 (844)
...+.++++.|.+.|+
T Consensus 255 ~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHhhcCHHHHHHHHH
Confidence 3445566666666654
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.57 E-value=1.3e+02 Score=29.19 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCM 615 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 615 (844)
.+.-++.+.+.+...+|+.+.++-++ -+|.. -+-..++..++-.|++++|..-++-.-+ +.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34456677788888888888887777 46655 4566677788889999999887776655 4444 4445554
Q ss_pred HHHHHhcCChHHHH-HHHHhC--CCCC--ChHHHHHHH-HHH--HhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 616 VDLLGRAGLLGEAL-DLIKSM--PVEP--NDVIWGSLL-AAC--QKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 616 i~~~~~~g~~~eA~-~~~~~m--~~~p--~~~~~~~ll-~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
|.. +.+. ++|..- |.-+ ....|-..+ .+. ...|.-+.....-+++++-.|..+
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 432 2222 233321 2111 233565544 333 333455556667778888777654
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.62 E-value=1.4e+02 Score=29.29 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=54.3
Q ss_pred CcHHHHHHHHHHhHhhcCC-CCCcchHHHHHHH---HHhcCChHHHHHHHHhC---CCCCChHHHHH---HH--HHHHhc
Q 003148 587 GLVNQGWHLFRSMTDIHGV-SPQIVHYGCMVDL---LGRAGLLGEALDLIKSM---PVEPNDVIWGS---LL--AACQKH 654 (844)
Q Consensus 587 g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~---~~~~g~~~eA~~~~~~m---~~~p~~~~~~~---ll--~~~~~~ 654 (844)
.++++|+..++..-+-+.. +.+...--|++.+ -+..|++.+|+++|++. .+..+..-|.. ++ +.|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5667777777776653322 2223333344433 35677888999998877 34434444443 22 224433
Q ss_pred -CCHHHHHHHHHHHHhcCCCCC
Q 003148 655 -QNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 655 -g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.|.--+..++++-.+++|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 677778889999999999644
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.37 E-value=4.7 Score=41.25 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
++.+.++...|++-+..+++++|+...-|-.-+.+....|+|++|.+.+....+.+.
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 344444445555555555566665555555555555555666666666555555443
No 359
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.16 E-value=21 Score=36.55 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM----PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
+|--=++-|.+..++..|.+.|.+. --.|| .+.|+.=..+-...||+..++.-..+++.++|.+...|..=+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456788899999999999876 12333 44565555555667999999999999999999999999988888
Q ss_pred HHHcCCchHHHHHHHHH
Q 003148 685 YASAGKWTNVARVRLQM 701 (844)
Q Consensus 685 ~~~~g~~~~a~~~~~~m 701 (844)
+....++++|..+.+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877777666543
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.99 E-value=13 Score=29.28 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=24.9
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHH
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDL 631 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 631 (844)
+....++|+..|....++..-.|+ ..+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665553322222 33455566666666666655554
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.52 E-value=2e+02 Score=30.74 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHH-hcCChHHHHHHHHhCCC---------CCChHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLG-RAGLLGEALDLIKSMPV---------EPNDVIWGSL 647 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~eA~~~~~~m~~---------~p~~~~~~~l 647 (844)
+..+.+.|-+..|.++.+-+.. +.|+ +..--.+||.|+ |+++++--+++.+.... -|+ ..+..-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 3467788888888888888776 5555 444445677774 67777777777766422 122 223332
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHHHhcCC
Q 003148 648 LAACQKHQNV---------------DIAAYAAERITELDP 672 (844)
Q Consensus 648 l~~~~~~g~~---------------~~a~~~~~~~~~~~p 672 (844)
+. +...++. +.|...+.+++..-|
T Consensus 186 LA-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 186 LA-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HH-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33 3333444 788888888888777
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.11 E-value=1.1e+02 Score=32.80 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=73.8
Q ss_pred CCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH------hcCChHHHHHHHHhCCC-CC-C
Q 003148 570 KPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLG------RAGLLGEALDLIKSMPV-EP-N 640 (844)
Q Consensus 570 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~------~~g~~~eA~~~~~~m~~-~p-~ 640 (844)
.|-. .|+..+-..|.+.|+.+.|.+++++..-.++- ++-..+. ..|. .+++. .| |
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~--------~~~~~F~~~~~~~~~g~--------~rL~~~~~eN 99 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER--------AFHPSFSPFRSNLTSGN--------CRLDYRRPEN 99 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------HHHHHhhhhhcccccCc--------cccCCccccc
Confidence 4444 46666777788888888888777776531110 0000010 0010 01111 12 4
Q ss_pred hHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-HcCCchHHHHHHHHHHh
Q 003148 641 DVIWGSL---LAACQKHQNVDIAAYAAERITELDPE-KSGVHVLLSNIYA-SAGKWTNVARVRLQMKE 703 (844)
Q Consensus 641 ~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 703 (844)
...|.++ +..+.+.|-+.-|.+..+-++.++|. ||-......+.|+ ++++++--.++.+....
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5555555 45677899999999999999999998 8777777777775 77888877777776554
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.03 E-value=29 Score=33.43 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
+.-+..+.+.+.+.+|+...+.- .-+| |...-..|+..++..|+.++|..-++-+-++.|++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456677888888888877654 4556 5556667777888888888888888888888887643
No 364
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.00 E-value=1.4e+02 Score=34.45 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=102.3
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccCh----------hhHHhHHHHccccCchHHHHHHHHHHHH-hC-CCCchh
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDR----------VTMVGVASACGYLGALDLAKWIYAYIEK-NG-IHCDMQ 508 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g-~~~~~~ 508 (844)
..++-.|....+++..+++.+.+... ||. +.|.-.|+--.+-|+-++|..+.--+++ .| +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap--- 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP--- 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC---
Confidence 34555677777777777777777552 221 2233334433445666666665433333 33 122
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---HHHHHHHHHhc
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI---VFVGVLTACSH 585 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~ 585 (844)
++|+-||++- +.|- +-+.|...+..+.|.+.|++..+ +.|+.. -+..|+.+-.+
T Consensus 279 ------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 ------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred ------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 3566666432 2221 12334555666788889998888 788763 35555544322
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
. ++.-.++- . .--.|-.+++|.|.++.-.++++-. ..+.+-.-.+|+.+|.++.+
T Consensus 336 ~--Fens~Elq----~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 H--FENSLELQ----Q---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred h--ccchHHHH----H---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHH
Confidence 1 11111111 1 1123456788999888877776432 23445556678999999999
Q ss_pred HHHhcCCCC
Q 003148 666 RITELDPEK 674 (844)
Q Consensus 666 ~~~~~~p~~ 674 (844)
+++++.|-.
T Consensus 391 ~mfKLk~P~ 399 (1226)
T KOG4279|consen 391 MMFKLKPPV 399 (1226)
T ss_pred HHhccCCce
Confidence 999998853
No 365
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.81 E-value=11 Score=36.49 Aligned_cols=58 Identities=31% Similarity=0.367 Sum_probs=47.9
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
+....|+.+.|.+++.+. ...| +...|-.+...-.+.|+++.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456778888888888887 5556 466898888888889999999999999999999763
No 366
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=62.80 E-value=47 Score=27.75 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
+..+-+..+....+.|+.....+.|.||.+.+++.-|.++|+..+.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666677889999999999999999999999999998887544 33337776654
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.66 E-value=14 Score=21.97 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003148 277 VNALVDMYMKCGAVDTAKQLFG 298 (844)
Q Consensus 277 ~~~Li~~y~~~g~~~~A~~~f~ 298 (844)
...|...+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666677777666654
No 368
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.51 E-value=55 Score=32.48 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC--------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCc----hHHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM--------PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE--LDPEKSG----VHVL 680 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m--------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~----~~~~ 680 (844)
+|..+.+.|++++..+.++++ .-.-...+.|+++.--....+.+.-...++-.++ .+..|.. +..-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 444555555555555555444 1111334566666655566666666666665554 1222332 2346
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 003148 681 LSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|+++|...|.+.+-.++.+.+..
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHH
Confidence 78888888888887777777754
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.37 E-value=34 Score=37.83 Aligned_cols=98 Identities=18% Similarity=0.103 Sum_probs=71.3
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PV-EPNDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~ 659 (844)
...|+...|...+..+.. ..|. ......|..++.+.|...+|-.++.+. .+ .-.+.+...+.+++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 356788888888777654 4443 334456777788888888888887665 22 2245677778888888889999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
|++.++++++++|+++..-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999998776666544
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=23 Score=34.61 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=31.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.+..+++.+..-..+++++.|+....+..|+........+++|..++.+..
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666666665553
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.49 E-value=17 Score=29.79 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566667777777777777777788888888877777666554
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.73 E-value=5.7e+02 Score=34.31 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
.+|......+..+|.++.|...+-...+ .+ .| ..+--....+...|+-..|+.++++-
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e-~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKE-SR-LP--EIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-cc--hHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4566666667777777777776665555 22 22 33444556667777777777766544
No 373
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.31 E-value=4.2e+02 Score=32.62 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=14.7
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhcCCHH
Q 003148 396 RIFDHMSNKTVVSWNSLIAGLIKNGDVE 423 (844)
Q Consensus 396 ~~f~~m~~~~~~~~~~li~~~~~~g~~~ 423 (844)
.+...+.++|+..-...+..+.+.+..+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~ 652 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG 652 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh
Confidence 3444444555555555555555555443
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.19 E-value=83 Score=26.58 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHh
Q 003148 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 333 (844)
..++|..+.+.+...+- ....+.-.-+..+.+.|++++|...=.....||++.|-++-.+ +.|..+++...|.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45667777777766653 3344444555667788999999655555666888888877554 77888888888887766
Q ss_pred cC
Q 003148 334 HG 335 (844)
Q Consensus 334 ~g 335 (844)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 375
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.73 E-value=2.7e+02 Score=30.50 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhC---Cc-ccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 454 EEAMELFRVMLSE---RI-KVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 454 ~~A~~l~~~m~~~---g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 5555566554332 33 34444444444433 5777777777666544311111 1222222
Q ss_pred HHhc---CCCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 003148 530 FRRM---EKRDVSAWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG 587 (844)
Q Consensus 530 ~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 587 (844)
+... ..++...+..+++++.+ .++.+.|+..+.+|++.|..|..+.-..+..++...|
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2221 12233344555666655 4788999999999999998887766555555544444
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.22 E-value=24 Score=23.06 Aligned_cols=32 Identities=16% Similarity=-0.041 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCCC
Q 003148 643 IWGSLLAACQKHQNVDIAAYA--AERITELDPEK 674 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 674 (844)
-|-++...+..+|++++|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666677788888888888 44666666653
No 377
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.01 E-value=28 Score=35.12 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=39.0
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 620 GRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.+.|+.++|..+|+.+ .+.|+ +.+..-+......++++-+|-+.+-+++.+.|.|+.+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4567777777777765 55554 334444444445567777788888888888887765544
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.42 E-value=1.4e+02 Score=32.32 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=61.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHh--ccCcHHHHHHHHHHhHhhcCC-CCCcchHHHHHHHHHhcC
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSI--VFVGVLTACS--HGGLVNQGWHLFRSMTDIHGV-SPQIVHYGCMVDLLGRAG 623 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g 623 (844)
-.++++..|.++|+++.+. +.++.. .+..+..+|. ..-+.++|.+.++........ .-....+..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3678899999999998886 555554 3444445554 356778899888887662111 001122223332222221
Q ss_pred ChHHHHHHHHhCCCCCC-hHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 003148 624 LLGEALDLIKSMPVEPN-DVIWGSLLAACQ--KHQNVDIAAYAAERITE 669 (844)
Q Consensus 624 ~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 669 (844)
.+.........-+.+|. ..+..-+.+|-+ ..|+++.|..-+-+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22111111111111111 123344445554 36889888876666655
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.26 E-value=19 Score=21.42 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666666666677666666655
No 380
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.24 E-value=1e+02 Score=30.29 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=49.0
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHH
Q 003148 517 FARCGDPQRAMQVFRRME--KRDV-SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQG 592 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 592 (844)
|....+++.|..-+.+.. .|.+ .-|+.=+-.+.+..+++.+.+--.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334456666776665544 4444 3355556666667777777776666666 6777643 33334445556666777
Q ss_pred HHHHHHhH
Q 003148 593 WHLFRSMT 600 (844)
Q Consensus 593 ~~~~~~m~ 600 (844)
+..+++..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 77666653
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.12 E-value=1.1e+02 Score=31.12 Aligned_cols=71 Identities=4% Similarity=0.083 Sum_probs=49.1
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--C--CCCChHHHHHHHHHHHhcCCHHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--P--VEPNDVIWGSLLAACQKHQNVDIAAYA 663 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 663 (844)
-++.+-+...++-.++..+..+.+..+++.+++.+-.++.+.. . ..-|...|..++..-...||.+....+
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3444444455666777777788888888888888888888766 2 223677888888888888876544433
No 382
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.95 E-value=2.3e+02 Score=28.66 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCChhhHHHHHHHHhhcCChh-hH
Q 003148 285 MKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLH----GPRPDRVTMLSAVSASAQLGDLL-CG 359 (844)
Q Consensus 285 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~-~a 359 (844)
.+.+++++|.+++.. =...+.++|+...|.++-.-|++. +.++|......++........-+ .-
T Consensus 1 v~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HHTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Q ss_pred HHHHHHHHHhCCC------chhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 003148 360 RMCHGYVLRNGLE------GWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMP 433 (844)
Q Consensus 360 ~~i~~~~~~~g~~------~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (844)
..+...+++.- . .|+.....+...|.+.|++.+|+.-|-.-.+++...+..++.-....|...++--...+.
T Consensus 70 ~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra- 147 (260)
T PF04190_consen 70 KKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA- 147 (260)
T ss_dssp HHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH-
T ss_pred HHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH-
Q ss_pred CCCccccccccccccccCChHHHHHHHHHHHh
Q 003148 434 GRDHISWNTMLGGLTQENMFEEAMELFRVMLS 465 (844)
Q Consensus 434 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 465 (844)
+-.|...++...|...+....+
T Consensus 148 ----------VL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 148 ----------VLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhcCHHHHHHHHHHHHH
No 383
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.86 E-value=1.2e+02 Score=33.82 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=20.4
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcC
Q 003148 511 TALVDMFARCGDPQRAMQVFRRME 534 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~ 534 (844)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356778999999999999999886
No 384
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.59 E-value=74 Score=30.45 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=18.9
Q ss_pred cCcHHHHHHHHHHhHhhc--CCCCCcchHHHHHHHHHhcCChHHH
Q 003148 586 GGLVNQGWHLFRSMTDIH--GVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
..+.++++.++..+.+.+ +-.++++.+.+|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344555555544444321 1123344444444444444444444
No 385
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.02 E-value=33 Score=34.62 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=47.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEE
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSI 715 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 715 (844)
.++.|+.|+|..+++.++.+.|+++.+..-++...-...+.-+|.+.+-+. +.-.|+.|-.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A----LtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA----LTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee----eeeCCCchHH
Confidence 467899999999999999999999998888888777777777777777443 3345665543
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.97 E-value=99 Score=27.94 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCcccHHHHHHHHHhCCC-chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003148 202 RNVVSWTSLICACARRDL-PKEAVYLFFEMVEEGIKPNSVTMVCVISACAKL 252 (844)
Q Consensus 202 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 252 (844)
.+..+|++++.+.++... ---+..+|.-|.+.+.+++..-|..+|++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 455678888888866655 345677888888878888888888888888665
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.88 E-value=20 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888899988888877777766543
No 388
>PRK10941 hypothetical protein; Provisional
Probab=52.26 E-value=75 Score=32.31 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=47.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.+-..|.+.++++.|+...+.+ .+.|+ +.-|.--.-.|.+.|....|..-++..++..|+++.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4555677777777777777776 55554 445666666678888888888888888888888775443
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.86 E-value=43 Score=27.66 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=38.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKS---------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+.||+..|.+.+.+.++...... .....++.++...|++++|.+.++...+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467788888888777776433211 23456788899999999999999887653
No 390
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.82 E-value=3.5e+02 Score=29.07 Aligned_cols=161 Identities=18% Similarity=0.299 Sum_probs=92.1
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEK------RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTA 582 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 582 (844)
...-+.+-|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++........+..+ .|+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s---t~~~--------- 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES---TPDA--------- 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh---Cchh---------
Confidence 445678889999999999999988542 1234566666665666777766666666554 2211
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-ChHHHHHHHHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP---------VEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~---------~~p-~~~~~~~ll~~~~ 652 (844)
+..... .+.+....+..|..+..+ +++.|.+.|-..+ +.| |..+|.. +.+..
T Consensus 220 -------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALA 281 (466)
T KOG0686|consen 220 -------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALA 281 (466)
T ss_pred -------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhc
Confidence 111111 234455566666665554 6666666554441 234 3444443 33333
Q ss_pred hcCCHHH-----HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 653 KHQNVDI-----AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 653 ~~g~~~~-----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
-.++-+. .-..|+..++++|+ ....|..-| .+++....++++.++.+
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 3332222 22457777888884 444555444 46777777777776653
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.34 E-value=31 Score=23.83 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=17.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQG 568 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g 568 (844)
+..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777777543
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.32 E-value=30 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 679 VLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 679 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
..|+.+|...|+.+.|+++++...+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999998887543
No 393
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.17 E-value=45 Score=36.12 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=31.9
Q ss_pred HHHHhCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 630 DLIKSMPVEPND--VIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 630 ~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.+|....++|.. .++++-++.+.+++|+.-|-.++++++++.|..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 345555677653 367777888899999999999999999999864
No 394
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.82 E-value=3.5e+02 Score=29.63 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=28.0
Q ss_pred cHHHHHHHHHh---CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 003148 206 SWTSLICACAR---RDLPKEAVYLFFEMVEEGIKPNSVTMVCVISAC 249 (844)
Q Consensus 206 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 249 (844)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455555554 477888888888888888777644444444443
No 395
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.79 E-value=1.5e+02 Score=28.35 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=51.9
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcee--hHHHHHHHHHcCChHHH
Q 003148 249 CAKLQNLELGDRVCAYIDELGMKAN--ALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVL--CNTIMSNYVRLGLAREA 324 (844)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A 324 (844)
....++++.|..-+...+...-+.+ ..+---|.......|.+|+|...++...+++..+ -..-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 3445555555555554443211111 1222234556667788888888888777665443 22223567888888888
Q ss_pred HHHHHHHHhcC
Q 003148 325 LAILDEMLLHG 335 (844)
Q Consensus 325 ~~l~~~m~~~g 335 (844)
..-|.+.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888887765
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.12 E-value=5.8e+02 Score=30.87 Aligned_cols=405 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCc-----eehHHHHHH---HHHcCChHHHHHHHHHHHhc---------CCCCChh--
Q 003148 281 VDMYMKCGAVDTAKQLFGECKDRNL-----VLCNTIMSN---YVRLGLAREALAILDEMLLH---------GPRPDRV-- 341 (844)
Q Consensus 281 i~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~~li~~---~~~~g~~~~A~~l~~~m~~~---------g~~p~~~-- 341 (844)
+..+.....+++|..+-+....++. .....+... +..+|++++|++.|.++... .+-|+..
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~~~~ 393 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSENSS 393 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCcccc
Q ss_pred -hHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCH------------------HHHHHHHhhcC
Q 003148 342 -TMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQ------------------EMACRIFDHMS 402 (844)
Q Consensus 342 -t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~------------------~~A~~~f~~m~ 402 (844)
.++.+.. .....+..+..+-..+ ..+..-.....-......+.+.. +.-.++.+...
T Consensus 394 ~~~~~~vp--~~~~~~~~~~~v~a~l--~~~~ylt~~r~~~~~~l~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~IDttL 469 (877)
T KOG2063|consen 394 IEFTGVVP--IRAPELRGGDLVPAVL--ALIVYLTQSRREENKKLNKYKMLYMNYFKNTLISELLKSDLNDILELIDTTL 469 (877)
T ss_pred cceeeecc--CchhhhccCcccchhh--hhhhHhHHHHHHHHHHHHHhhhhHHhhhhccCcchhhccchHHHHHHHHHHH
Q ss_pred C-----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHh---CCcccChhh
Q 003148 403 N-----KTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLS---ERIKVDRVT 474 (844)
Q Consensus 403 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t 474 (844)
- .|...-..++..-...-.+++...++.+-.. |..|+..|...|+.++|++++.+... ..-.--...
T Consensus 470 lk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~ 544 (877)
T KOG2063|consen 470 LKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG 544 (877)
T ss_pred HHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh
Q ss_pred HHhHHHHccccCch--HHHHHHHHHHHHhCCCCchhHHhH------------HhhhHHhcCCHHHHHHHHHhcC----CC
Q 003148 475 MVGVASACGYLGAL--DLAKWIYAYIEKNGIHCDMQLATA------------LVDMFARCGDPQRAMQVFRRME----KR 536 (844)
Q Consensus 475 ~~~ll~a~~~~~~~--~~a~~i~~~~~~~g~~~~~~~~~~------------li~~y~k~g~~~~A~~~~~~~~----~~ 536 (844)
+-.++.-..+.+.. +...+.-....+........++.. -+--|.+....+-+...++.+. ..
T Consensus 545 ~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~ 624 (877)
T KOG2063|consen 545 LEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT 624 (877)
T ss_pred HHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc
Q ss_pred CHhHHHHHHHHHHhcCC--------hHHHHHH--HHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC
Q 003148 537 DVSAWTAAIGAMAMEGN--------GEQAVEL--FNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS 606 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~--------~~~A~~l--~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 606 (844)
+..-.+.++..|+..=+ .+++.+. -++....-..-|...-..++.-....+.+++-.-++.++.+
T Consensus 625 ~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~k----- 699 (877)
T KOG2063|consen 625 STLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGK----- 699 (877)
T ss_pred chHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhh-----
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHHHHHHHHHHHhc-CCHHHHHHHHHH-------------HHhc
Q 003148 607 PQIVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVIWGSLLAACQKH-QNVDIAAYAAER-------------ITEL 670 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~-------------~~~~ 670 (844)
|=.++--..-..++++.|..+.... ..+++...|..++..+... .++..+....-. ++++
T Consensus 700 ----he~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~ 775 (877)
T KOG2063|consen 700 ----HEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKL 775 (877)
T ss_pred ----HHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHh
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 671 DPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 671 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
-|++.........+-....+--++.+-.+.++.
T Consensus 776 Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~ 808 (877)
T KOG2063|consen 776 LPDDISLKDLCSFLSKLLRKRFEALRTTQVQKS 808 (877)
T ss_pred CCccCcHhHHHHHHHHHHHHHHHhcchhHHHHH
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.69 E-value=46 Score=26.31 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=34.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
...+.++|+..++..++.-..|.. .++..++.+++..|++.+.+.+--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888775433333 567778888888888888776643
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.69 E-value=62 Score=29.15 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=46.3
Q ss_pred hHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 625 LGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 625 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
-+.|.++++-|+ ...............|++..|..+.+.++..+|+|...-...+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456778888775 223333444556778999999999999999999999888888888876665443
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.35 E-value=1.5e+02 Score=25.05 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 003148 151 SSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEM 230 (844)
Q Consensus 151 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 230 (844)
....++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 4457888888888887763 344444455566788999999955555666789999987755 3678878888877777
Q ss_pred HHcC
Q 003148 231 VEEG 234 (844)
Q Consensus 231 ~~~g 234 (844)
-.+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.03 E-value=2.2e+02 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=28.3
Q ss_pred CHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 003148 537 DVSAWTAAIGAMAMEGN-GEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG 586 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 586 (844)
+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44456666666644443 223455666666655666666666666666543
No 401
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=4.3e+02 Score=28.40 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=51.7
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhCCCCC--ChHHHHHHH----HHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSMPVEP--NDVIWGSLL----AAC 651 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll----~~~ 651 (844)
++-..|+...-...+........+.-| ....|+|++.|...+.++.|.+++.+...+. ...-|.-.+ ..-
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk 257 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK 257 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH
Confidence 444555555555555544443333333 3345666677777777888888877774321 111222221 123
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
..+++++.|.+.+-+++...|++
T Consensus 258 aiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 258 AIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhcchhHHHHHHHHHHHhCcch
Confidence 45677777777777777777754
No 402
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.68 E-value=2e+02 Score=25.59 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
-|.-+|.+.|+++++++..+.+++.+|+|..+
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35557889999999999999999999988633
No 403
>PF15469 Sec5: Exocyst complex component Sec5
Probab=44.52 E-value=2.8e+02 Score=26.20 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQN 656 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 656 (844)
.-|.-|.+.|+++.+...|.++...++-.. ....+.. -+.+..+.++... ...|..|... ...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 445567777888888887777766322211 1111111 1233333333321 1233333221 145
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
.++.....+.+++++|++..++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 6777777888888887544444433
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.37 E-value=56 Score=31.35 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=28.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 636 PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 636 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
...|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777778888888888888887777777
No 405
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.32 E-value=2.1e+02 Score=24.80 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchH----HHHHHHHHHcCCchHHHHHHHHHH
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERIT-------ELDPEKSGVH----VLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.+..|..++...|++++++...++++ +++.+....| ..-+.++...|+.++|.+.|+..-
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 33444444555555555554444444 3444433333 244556677888888888776543
No 406
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=44.18 E-value=5.1e+02 Score=29.16 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=65.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHc
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG-VHVLLSNIYASA 688 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~ 688 (844)
..-.+|-+-+....++.-|.++-++.++. ...+|.+..-+|.+.+++..|..-|++++++.-++.. ...-+.+ ..+.
T Consensus 557 ~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin-~ieG 634 (1141)
T KOG1811|consen 557 AASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIIN-LIEG 634 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHH-hhcC
Confidence 34456777777777888888888877664 4458999999999999999999999999998765543 3333333 3445
Q ss_pred CCchHHHHHHHHHHhCCCccCC
Q 003148 689 GKWTNVARVRLQMKEQGIRKLP 710 (844)
Q Consensus 689 g~~~~a~~~~~~m~~~~~~~~~ 710 (844)
|-..++..++ .|.+.-.++.|
T Consensus 635 gpp~dVq~Vr-em~dhlak~ap 655 (1141)
T KOG1811|consen 635 GPPRDVQDVR-EMLDHLAKPAP 655 (1141)
T ss_pred CCcchHHHHH-HHHHHhccCCc
Confidence 5333443333 33333334444
No 407
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.75 E-value=1.8e+02 Score=23.79 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCch-HHHHHHHHH
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSGVHVLLSNIYASAGKWT-NVARVRLQM 701 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 701 (844)
|......+...+...|+++.|.+.+-.+++.+|+ +...-..|..++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4567777788888999999999998888887765 3556677777777777744 555566555
No 408
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=43.39 E-value=3.9e+02 Score=27.61 Aligned_cols=163 Identities=16% Similarity=0.243 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003148 493 WIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP 571 (844)
Q Consensus 493 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 571 (844)
-+++.+...++-++.....+-++...+.+.+|-+..++.... ..|. -+++. . +-.+.+.-++++.+. +.|
T Consensus 21 PLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~--p~a~~----e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 21 PLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM--PNALV----E--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc--hHHHH----H--HHHHHHHHHHHHHHH-HHH
Confidence 345555666777777777778888888888999988888773 1111 11111 1 111222222333221 111
Q ss_pred ChhHHHHHH---HHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHH---HhCCCCCCh---
Q 003148 572 DSIVFVGVL---TACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLI---KSMPVEPND--- 641 (844)
Q Consensus 572 ~~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~---~~m~~~p~~--- 641 (844)
...++ ..-.....-.+....++.+.+.+++.|+ +++.--...-...+|++..|-.++ ....-.||.
T Consensus 92 ----iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~l 167 (432)
T KOG2758|consen 92 ----IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYL 167 (432)
T ss_pred ----HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhH
Confidence 11111 1111222334457788888888999998 555555666667899999887764 333334444
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 642 -VIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 642 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
..|+-|.+--. ..+.+.|.+-+.++.+
T Consensus 168 salwGKlASEIL-~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 168 SALWGKLASEIL-TQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 35665544322 2467778777766665
No 409
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.05 E-value=6.1e+02 Score=29.72 Aligned_cols=398 Identities=12% Similarity=0.013 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 003148 174 FVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQ 253 (844)
Q Consensus 174 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 253 (844)
..-..-+..+.+.+++..... |..-+..+...-.....+....|+.++|....+.+-..|-. .......+++.+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcC
Confidence 334444555566777777776 33222234444556667777788877777777776655432 3445555555555444
Q ss_pred CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHh
Q 003148 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 333 (844)
.+.... .+. -+......|+...|..+...+..........++..+. +...+..++..
T Consensus 178 ~lt~~d----------------~w~-R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~--- 234 (644)
T PRK11619 178 KQDPLA----------------YLE-RIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART--- 234 (644)
T ss_pred CCCHHH----------------HHH-HHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc---
Confidence 333211 111 1233334455555555555442211111111221111 11111111111
Q ss_pred cCCCCChhhHHHHHHHHh--hcCChhhHHHHHHHHHHh-CCCchh--hHHHHHHHHHHHcCCHHHHHHHHhhcCCC--Cc
Q 003148 334 HGPRPDRVTMLSAVSASA--QLGDLLCGRMCHGYVLRN-GLEGWD--SICNTMIDMYMKCGKQEMACRIFDHMSNK--TV 406 (844)
Q Consensus 334 ~g~~p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~-g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~ 406 (844)
+.|+...-..++.++. ...+.+.|...+....+. ++.+.. .+...+..-....+...+|...++..... +.
T Consensus 235 --~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~ 312 (644)
T PRK11619 235 --TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST 312 (644)
T ss_pred --cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc
Confidence 1111111111111111 122334444444443222 222221 12223322222222244555555544321 33
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCC--Cc-cccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHcc
Q 003148 407 VSWNSLIAGLIKNGDVESAREVFSEMPGR--DH-ISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACG 483 (844)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 483 (844)
..+.--+..-.+.++++.+...+..|+.. +. .-..=+..++...|+.++|...|+++... .+|-.++.+-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~- 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQ- 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHH-
Confidence 33333344444677777777777777542 11 11122344445567778887777776321 1333333221
Q ss_pred ccCch-HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 003148 484 YLGAL-DLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELF 561 (844)
Q Consensus 484 ~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 561 (844)
++|.. ......... ....+..+.. -.-+..+...|+...|...+..+. ..+......+...-.+.|..+.++...
T Consensus 386 ~Lg~~~~~~~~~~~~-~~~~~~~~~~--~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 386 RLGEEYPLKIDKAPK-PDSALTQGPE--MARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HcCCCCCCCCCCCCc-hhhhhccChH--HHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11100 000000000 0000000111 112334556678888877776554 333344444444445667777776665
Q ss_pred HHHHHCC----CCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcch
Q 003148 562 NEMLRQG----IKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVH 611 (844)
Q Consensus 562 ~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 611 (844)
......+ --| ..|...+..++..-.++.++- +.-+..+.++.|+...
T Consensus 463 ~~~~~~~~~~~rfp--~~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a~S 513 (644)
T PRK11619 463 IAGKLWDHLEERFP--LAWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKARS 513 (644)
T ss_pred hhchhHHHHHHhCC--cchHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCCcc
Confidence 4332210 011 135556666665555555443 3334444677777543
No 410
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.82 E-value=3.3e+02 Score=26.88 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQK 653 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~ 653 (844)
++.++...|+.+.|..+++.+.- .-.+......+... ...|.+.||..+.+...-+-....|..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44455556666666666654321 11111122222333 4456777777766665321112355555555543
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.36 E-value=1.3e+02 Score=24.34 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHH
Q 003148 492 KWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVE 559 (844)
Q Consensus 492 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 559 (844)
.+++......|+-. ......+-..-.+.|+.+.|.+++..++ +..-.|...++++...|..+-|.+
T Consensus 22 ~~v~d~ll~~~ilT-~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 22 RDVCDKCLEQGLLT-EEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 34455555555322 1222222222235688889999999888 888888888999888887766643
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.28 E-value=1.4e+02 Score=26.34 Aligned_cols=42 Identities=2% Similarity=-0.051 Sum_probs=32.9
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 659 IAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 659 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
.+..+++.+.. +.-+.+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67778887775 5556667888889999999999999998864
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.04 E-value=1.5e+02 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003148 206 SWTSLICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (844)
-|..|+.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999877
No 414
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.72 E-value=4.3e+02 Score=31.46 Aligned_cols=154 Identities=15% Similarity=0.171 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCCchhH----HhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 492 KWIYAYIEKNGIHCDMQL----ATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 492 ~~i~~~~~~~g~~~~~~~----~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
..+..++.+.|.+-=.-. -..-.+....||+++.|.+.-..+. |...|..|+..-...|+.+-|+..|++...
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn- 700 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN- 700 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh-
Confidence 345556666664311000 0122345668999999998877665 456899999999999999999999988765
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH
Q 003148 568 GIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL 647 (844)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l 647 (844)
|..|--.|.-.|+.++-.++.+.+.. .-|... ..+..+| .|+.++=.++++..+..|- .|.
T Consensus 701 --------fekLsfLYliTgn~eKL~Km~~iae~----r~D~~~-~~qnalY--l~dv~ervkIl~n~g~~~l--ayl-- 761 (1202)
T KOG0292|consen 701 --------FEKLSFLYLITGNLEKLSKMMKIAEI----RNDATG-QFQNALY--LGDVKERVKILENGGQLPL--AYL-- 761 (1202)
T ss_pred --------hhheeEEEEEeCCHHHHHHHHHHHHh----hhhhHH-HHHHHHH--hccHHHHHHHHHhcCcccH--HHH--
Confidence 33333356667888877666555433 223111 1112222 5889999999988875542 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 003148 648 LAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~ 669 (844)
.-..||.-++|+++.++.-.
T Consensus 762 --ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 762 --TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred --HHhhcCcHHHHHHHHHhhcc
Confidence 12468888899988887765
No 415
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=41.64 E-value=2.6e+02 Score=28.40 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH--
Q 003148 545 IGAMAMEGNGEQAVELFNEMLR--QGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLG-- 620 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 620 (844)
|.+++..|++.+++...-+--+ +.+.|...-.. |-.|++.|......++-..-...- -.-+..-|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHH
Confidence 6677777888877765444332 11333333333 334788888888777777666521 1122334777766654
Q ss_pred ---hcCChHHHHHHHHhC
Q 003148 621 ---RAGLLGEALDLIKSM 635 (844)
Q Consensus 621 ---~~g~~~eA~~~~~~m 635 (844)
=.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 579999999998554
No 416
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.24 E-value=5e+02 Score=28.22 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=45.7
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003148 511 TALVDMFARCGDPQRAMQVFRRMEKR---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQG 568 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 568 (844)
..|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-+.-+.++++.-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34677788899999999999987754 46788888888888888777777777766655
No 417
>PRK14015 pepN aminopeptidase N; Provisional
Probab=40.80 E-value=4.6e+02 Score=32.02 Aligned_cols=122 Identities=14% Similarity=0.061 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~ 653 (844)
-.+-|.++.+.+.. +..+.++...+++.-.|- ..-|-.+...-.+.+-++...++.+.-.+.+ |+.-.++|++++..
T Consensus 717 ~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~ 795 (875)
T PRK14015 717 RLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAA 795 (875)
T ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhh
Confidence 33445555544332 233334333333333343 2233333322222233444444443333332 44566888888854
Q ss_pred cCC------HHHHHH-HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 654 HQN------VDIAAY-AAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 654 ~g~------~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
.+. -..+.+ +.+.++++++-||.+-..|+..+.+-.++++.++..
T Consensus 796 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~ 847 (875)
T PRK14015 796 ANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQAL 847 (875)
T ss_pred cCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHH
Confidence 332 234444 567788999999999999999999999999877643
No 418
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.72 E-value=33 Score=39.84 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=37.5
Q ss_pred HHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 618 LLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
+...+|+++.|++.-++.. |..+|..|...-..+||...|+..+++...
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3456788888888877763 667888888888888888888888877654
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.26 E-value=2.1e+02 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
-|..|+.-|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888776
No 420
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.84 E-value=3e+02 Score=28.47 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCCCCchHH
Q 003148 659 IAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~ 679 (844)
-|.++..++.+.+|.-|.+..
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 366778888899998765443
No 421
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.70 E-value=2.8e+02 Score=27.40 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHhcCCCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRMEKRDVSAW--TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
.+++++|.+.+-. |.+..| .-++.++...|+.+.|+.+++.+.-..-.+ .....++.+ ...+.+.||..+-+
T Consensus 91 ~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 3667777776633 333222 136777777888888888887643311111 222233333 44578888888776
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChH
Q 003148 598 SMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDV 642 (844)
Q Consensus 598 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~ 642 (844)
...+. -....+..++..+.....-....+.+-.+|+.+...
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 65441 113455666666554332233333444556655433
No 422
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=38.55 E-value=5.9e+02 Score=31.07 Aligned_cols=122 Identities=13% Similarity=0.028 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~ 653 (844)
-.+-+.++.+.+. .+....++...+++.-.|- ..-|-.+...-...+-++...++.+.-.+.+ |+.-.++|++++..
T Consensus 707 ~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~ 785 (863)
T TIGR02414 707 RLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFAN 785 (863)
T ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHh
Confidence 3344445554333 2333344444443333343 2233333222222233344444433333332 44566888888853
Q ss_pred cC------CHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 654 HQ------NVDIAAY-AAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 654 ~g------~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
.+ .-..+.+ +.+.++++++-||.+-..|+..+.+=.++++.++-.
T Consensus 786 ~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~~~ 837 (863)
T TIGR02414 786 NNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQEL 837 (863)
T ss_pred cCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 32 2233444 567788999999999999999999999999877643
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.45 E-value=41 Score=29.65 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=25.6
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003148 114 SCIGLGVEAISLYVELAGFGILPDKFTFPFVLNAC 148 (844)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 148 (844)
-..|.-.+|..+|+.|...|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677889999999999988874 77777665
No 424
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.20 E-value=65 Score=34.99 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHHHH-HHHHhccCcHHHHHHHHHHhHh
Q 003148 552 GNGEQAVELFNEMLRQGIKPDSIVFVGV-LTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 552 g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~ 601 (844)
+.++.|+.++.+.++ +.||.+.|.+. ..++.+.+++..|+.=+..+++
T Consensus 18 ~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred chHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 444555555555555 44544332222 2344445555555444444444
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=4.5e+02 Score=26.74 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=81.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhH-------HHHHHHHHhccCcHHHHHHHHHHhHh---hcCCCCCcchHHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSIV-------FVGVLTACSHGGLVNQGWHLFRSMTD---IHGVSPQIVHYGCMVD 617 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~li~ 617 (844)
..+.+++++|+..+.+.+..|+..|..+ ...+...|...|+...-.+......+ .+.-........+|++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 4556788888888888888887766543 44556667777766554444333222 0111111334444555
Q ss_pred HHHh-cCChHHHHHHHHhC---CCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHH----hc--CCCCCchHHHHH
Q 003148 618 LLGR-AGLLGEALDLIKSM---PVEPND-----VIWGSLLAACQKHQNVDIAAYAAERIT----EL--DPEKSGVHVLLS 682 (844)
Q Consensus 618 ~~~~-~g~~~eA~~~~~~m---~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~--~p~~~~~~~~l~ 682 (844)
.+.. ...+++-+++.+.. ..+... ..-.-++..+.+.|.+.+|+....-++ ++ .|.-...|..-+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 4432 22344444433322 000010 111234556677777777776544433 22 233445666667
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 003148 683 NIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 683 ~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+|....+..++..-+...+-.
T Consensus 173 Kvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHhhhhhhhHHHHHHHH
Confidence 7777666666666666555544
No 426
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.34 E-value=3.9e+02 Score=25.76 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
..+.++..+...|+++.|-+.|.-++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455666677777777777777777663
No 427
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.18 E-value=3.8e+02 Score=25.57 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=33.0
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCC--------------CCchhHHhHHhhhHHhcCCHHHHHHHHHhc
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGI--------------HCDMQLATALVDMFARCGDPQRAMQVFRRM 533 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~--------------~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 533 (844)
++-.|.+..++.+|+.+++.+.+..+ .+--.+.|.-..++.++|.+|.|..++++-
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 33444555556666666555543322 223345566677788888888888887743
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.15 E-value=53 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=11.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEML 565 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~ 565 (844)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555544
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.03 E-value=1.7e+02 Score=32.83 Aligned_cols=133 Identities=15% Similarity=0.052 Sum_probs=91.4
Q ss_pred CCCChhHHHHHHHHHhcc--CcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHhC-CCCC--ChH
Q 003148 569 IKPDSIVFVGVLTACSHG--GLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR-AGLLGEALDLIKSM-PVEP--NDV 642 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m-~~~p--~~~ 642 (844)
--|+..|...++.-...- ..-+-|-.++-.|.+ .+.|.-...| +..+|.| .|+...|.+.+..+ ..+| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346666666655544332 223445566666654 3444433222 3445554 68889999888876 3444 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..-.|.....+.|-...|-..+.+.+.+....|-++..++++|.-..+.+.|.+.++...+.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 45567777777787788999999999988888889999999999999999999999877654
No 430
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.02 E-value=6.3e+02 Score=28.14 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCccc--HHHHHHH-----HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChHHHHH
Q 003148 123 ISLYVELAGFGILPDKFT--FPFVLNA-----CTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYG-ECGDIVDGRR 194 (844)
Q Consensus 123 ~~~~~~m~~~g~~p~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-~~g~~~~A~~ 194 (844)
.++++.+...|..|+... ..+.+.. +...++.+.+..+.+.-... -..|..-.+.|..+.. ..|+.+-...
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHH
Q ss_pred HHhhcCCCCcccHH--HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 003148 195 VFDEMSERNVVSWT--SLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM--VCVISACAKLQNLELGDRVCAYIDELGM 270 (844)
Q Consensus 195 ~f~~m~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 270 (844)
+++.-...+..... +.+...++.|. .-.++++.+.+.|..++...- .+.+...+..| -.++.+.+++.|.
T Consensus 127 Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga 200 (480)
T PHA03100 127 LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGA 200 (480)
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCC
Q ss_pred CcchhHH--------HHHHHHHHhcCC--HHHHHHHHHh---cCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003148 271 KANALMV--------NALVDMYMKCGA--VDTAKQLFGE---CKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPR 337 (844)
Q Consensus 271 ~~~~~~~--------~~Li~~y~~~g~--~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 337 (844)
.++.... ...+...+..|. .+-...+++. ...+|..-++.+..+..... .++++.+.+.|..
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~gad 275 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGAN 275 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCC
Q ss_pred CChhhHH--HHHHHHhhcCChhhHHHHHHH
Q 003148 338 PDRVTML--SAVSASAQLGDLLCGRMCHGY 365 (844)
Q Consensus 338 p~~~t~~--~ll~~~~~~~~~~~a~~i~~~ 365 (844)
|+...-. +.+..+...++.+..+.+...
T Consensus 276 ~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 276 PNLVNKYGDTPLHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred CCccCCCCCcHHHHHHHhCCHHHHHHHHhc
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.82 E-value=96 Score=29.70 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=17.4
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 605 VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 605 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
..|+...|..++..+...|+.++|....+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555555554
No 432
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.55 E-value=4.5e+02 Score=25.99 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=31.3
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 003148 528 QVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 528 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
.+|+-..+|.+.....|+..|. .++.++|.+.++++-+.|..|...
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 3444444566666666666654 467888888888888888887653
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.47 E-value=2.2e+02 Score=26.89 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34568888888889888888888 7766433
No 434
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.69 E-value=4e+02 Score=25.47 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHhcCCHHHHHHHHHhcC------CCCHhHHHHHHH-HHHhcCCh--HHHHHHHHHHHH
Q 003148 517 FARCGDPQRAMQVFRRME------KRDVSAWTAAIG-AMAMEGNG--EQAVELFNEMLR 566 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~g~~--~~A~~l~~~m~~ 566 (844)
....|++++|..-++++. ++-...|..+.. +++.++.- -+|.-++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 345677888877777665 223456666665 67777654 355555555544
No 435
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.57 E-value=6.8e+02 Score=27.81 Aligned_cols=440 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred hhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHH
Q 003148 83 LTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHG 162 (844)
Q Consensus 83 ~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (844)
...|..-|. .|+..|..-|.-+-+.+.+.+.-.+|.+|......-...--.+...-+-...+++.++.++-
T Consensus 94 yr~at~rf~---------~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 94 YRRATNRFN---------GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHhcC---------CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 003148 163 AIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM 242 (844)
Q Consensus 163 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 242 (844)
..++.. +.++..|-....+=...-.--.+++..-....-+. .-=...|..+.....-..=...|..+...
T Consensus 165 rgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~eie~ge~~~~~~~~s~~~~~~~~k~~e-- 234 (568)
T KOG2396|consen 165 RGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEEIERGELAWINYANSVDIIKGAVKSVE-- 234 (568)
T ss_pred HHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHHHHHHHHHHHhhccchhhhhcchhhcc--
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChH
Q 003148 243 VCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAR 322 (844)
Q Consensus 243 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 322 (844)
.+..-......+-.+-.-.....+.+.|+.++ .+.|.+.++-..+-+......+-.++--....+
T Consensus 235 ---~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~------------~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s 299 (568)
T KOG2396|consen 235 ---LSVAEKFDFLKELQKNIIDDLQSKAPDNPLLW------------DDLAQRELEILSQTDLQHTDNQAKAVEVGSKES 299 (568)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhccCCCCCccH------------HHHHHHHHHHHHHhhccchhhhhhchhcchhHH
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH--------HhCCCchhhHHHHHHHHHHHcCCHHHH
Q 003148 323 EALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVL--------RNGLEGWDSICNTMIDMYMKCGKQEMA 394 (844)
Q Consensus 323 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~~~g~~~~A 394 (844)
....+|++..+. -|+...+...|..|-..-....+..+...+. ..--+.....|..+.-++.+.....++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Q ss_pred HHHHh-hcCCCCcchHHHHHHHHHhcCCHHHHHHHHhh--------CCCCCcccccccc-ccccccCChHHHHHHHHHHH
Q 003148 395 CRIFD-HMSNKTVVSWNSLIAGLIKNGDVESAREVFSE--------MPGRDHISWNTML-GGLTQENMFEEAMELFRVML 464 (844)
Q Consensus 395 ~~~f~-~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~ 464 (844)
-..+. +....+...|-.-+........ .+.-+|.+ +...-..+|++.+ ..+.+....+..+..+..+
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~- 454 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV- 454 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-
Q ss_pred hCCcccChhhHHh-HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhh---HHhcCCHHHHHHHHHhcC---CCC
Q 003148 465 SERIKVDRVTMVG-VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM---FARCGDPQRAMQVFRRME---KRD 537 (844)
Q Consensus 465 ~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~---y~k~g~~~~A~~~~~~~~---~~~ 537 (844)
..|+.+|+.+ ++.-+-..+..+.|+.++..+.... +++...+..+|+. ...|| +..+...++.+. ..|
T Consensus 455 ---~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 455 ---IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGAD 529 (568)
T ss_pred ---cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCC
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 538 VSAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
+..|-..+.--..+|..+.+-.++.+..+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
No 436
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.56 E-value=3.7e+02 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=18.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCC-CCh
Q 003148 549 AMEGNGEQAVELFNEMLRQGIK-PDS 573 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~-p~~ 573 (844)
...|+++.|+++.+.+++.|.. |+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 4568888999999888888743 543
No 437
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.43 E-value=2.3e+02 Score=32.80 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----------HHHHHHHHHhccCcHHHHHHHHHHhHhhc-CCCCC
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----------VFVGVLTACSHGGLVNQGWHLFRSMTDIH-GVSPQ 608 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~ 608 (844)
+-..|+-.|....+++..+++.+.+.. -||.. .|.-.++-=.+-|+-++|+...-.+.++. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 344566667777777777777777766 33321 12222333334566677776666655533 33454
Q ss_pred c
Q 003148 609 I 609 (844)
Q Consensus 609 ~ 609 (844)
.
T Consensus 280 m 280 (1226)
T KOG4279|consen 280 M 280 (1226)
T ss_pred e
Confidence 3
No 438
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=34.43 E-value=20 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=9.4
Q ss_pred CchhhhhHhhhc
Q 003148 805 CDCHSFAKLVSK 816 (844)
Q Consensus 805 ~~~h~~~~~~s~ 816 (844)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 467899998874
No 439
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=33.88 E-value=2.1e+02 Score=28.99 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 003148 108 SLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGE-- 185 (844)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-- 185 (844)
.=|.+++..++|.+++...-+--+.--+......-..|-.|++.+......++-...++..-..+..-|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346788888888888876544333211122223444445566777777777666666654322333346666555544
Q ss_pred ---cCChHHHHHHH
Q 003148 186 ---CGDIVDGRRVF 196 (844)
Q Consensus 186 ---~g~~~~A~~~f 196 (844)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666554
No 440
>PF15161 Neuropep_like: Neuropeptide-like
Probab=33.75 E-value=17 Score=25.87 Aligned_cols=17 Identities=35% Similarity=0.962 Sum_probs=12.1
Q ss_pred eccccCCchhhhhHhhhc
Q 003148 799 KNLRLCCDCHSFAKLVSK 816 (844)
Q Consensus 799 ~nl~~c~~~h~~~~~~s~ 816 (844)
---|-|.|||.+- |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 4568899999765 5543
No 441
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=6.9e+02 Score=27.62 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=98.0
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCh-------hHHHHHHHHHh-ccCcHHHHHHHHHHhHhhc-CCCCCcchHHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQ-GIKPDS-------IVFVGVLTACS-HGGLVNQGWHLFRSMTDIH-GVSPQIVHYGCMVD 617 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~ 617 (844)
-.-.|++.+|++-...|.+- .-.|.. .-...++..|+ ..|.++.|...|....+.. ........-..+.-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 34579999999998888762 123331 12334455444 5688999999888876621 11111223335667
Q ss_pred HHHhcCChHHHHHHHHhCCCCCChHHHH------H--HHHH--HHhcCCHHHHHHHHHHHHhcCCC-C-----CchHHHH
Q 003148 618 LLGRAGLLGEALDLIKSMPVEPNDVIWG------S--LLAA--CQKHQNVDIAAYAAERITELDPE-K-----SGVHVLL 681 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~------~--ll~~--~~~~g~~~~a~~~~~~~~~~~p~-~-----~~~~~~l 681 (844)
.|.+.|+-++-.++.+..+- |+..++. + ++.+ ..+++++.+|.....+.+++... | .-..+.|
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p-~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGP-LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHhccHHHHHHHHHhcCC-CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 78999998888888888731 2222111 1 1122 24678999999999999986521 1 2345788
Q ss_pred HHHHHHcCCchHHHHHHHHHH
Q 003148 682 SNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~ 702 (844)
+++....|+-.|+.+...-..
T Consensus 492 s~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHhcchHHHHhccchHH
Confidence 999999999998877654443
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.83 E-value=1.3e+02 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445677889999999988888753
No 443
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=32.82 E-value=2.5e+02 Score=28.39 Aligned_cols=58 Identities=26% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+=+++...++.+.|....++.+.++|+++.-..--+-+|++.|...-|.+-+....+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3346778889999999999999999999877777888999999999998888775543
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.67 E-value=47 Score=29.33 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.3
Q ss_pred HcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003148 317 RLGLAREALAILDEMLLHGPRPDRVTMLSAVSAS 350 (844)
Q Consensus 317 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 350 (844)
..|.-.+|..+|.+|++.|-.||. |..||..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999986 55555543
No 445
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.36 E-value=2.7e+02 Score=22.66 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHH
Q 003148 258 GDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREA 324 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 324 (844)
+.++++.+.+.|+-.+ .....+-..-...|+.+.|+++++.++ +..-.+...+.++-..|+-+-|
T Consensus 21 ~~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555553221 111222222224577888888888888 7777788888888777765544
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.86 E-value=78 Score=32.38 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL 580 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 580 (844)
-||..|..-.+.||.++|+.+++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46789999999999999999999999998765556655443
No 447
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.76 E-value=1.3e+02 Score=26.42 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHHHhC-CCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 003148 626 GEALDLIKSM-PVEPNDV---IWGSLLAACQKHQNVDIAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
+++.+.|... ..+.|+. +|-.++..| +....++..+.. +.-..+..|...+..+-..|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555444 3344433 555555443 235566666664 444556678888888999999999998885
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.55 E-value=73 Score=23.90 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.--..++.++...|++++|.++.+.+.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344566666677777777776666654
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.47 E-value=5.4e+02 Score=27.71 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCC------CCcchHHHHHHHHHhcCCHHHHHHHHhhC
Q 003148 377 ICNTMIDMYMKCGKQEMACRIFDHMSN------KTVVSWNSLIAGLIKNGDVESAREVFSEM 432 (844)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (844)
.+.-+.+.|..||+++.|.+.+-+..+ ..+..|-.+|..-.-.|++........+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 356788899999999999999999665 12234555555555666665554444433
No 450
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.23 E-value=28 Score=27.66 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.|+.++|...|++.++.--+-..+-+. .....-.|++|.++..+|++
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 466677777777666411000000000 23455679999999999976
No 451
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.04 E-value=5e+02 Score=24.81 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhCC--------------CchhhHHHHHHHHHHHcCCHHHHHHHHh
Q 003148 345 SAVSASAQLGDLLCGRMCHGYVLRNGL--------------EGWDSICNTMIDMYMKCGKQEMACRIFD 399 (844)
Q Consensus 345 ~ll~~~~~~~~~~~a~~i~~~~~~~g~--------------~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (844)
+++..|.+..++..|+.++..+-+..+ .+--.+.|.-...+.++|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 444455555555555555555443211 1112234444555555555555555554
No 452
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=29.90 E-value=1.2e+02 Score=30.89 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 003148 177 NCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMV 231 (844)
Q Consensus 177 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 231 (844)
+.....|..+|.+.+|.++-+.... -+...|-.++..++..|+--.|..-+++|.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344566677777777776665543 244556677777777777666666666664
No 453
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.88 E-value=81 Score=30.75 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=49.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.+.++.+-+.+++.+++++-|+....|..++..--++|+.+.|.+-++...+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999999999998887643
No 454
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=29.88 E-value=8.2e+02 Score=27.30 Aligned_cols=159 Identities=11% Similarity=0.167 Sum_probs=101.0
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVD 515 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (844)
|-...-+++..+.++-.+.-...+..+|...| -+...+..++..+... ..+.--.+++.+.+..+. |+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55556677888888888888888888888754 4566777778777766 455666777777777654 5556667777
Q ss_pred hHHhcCCHHHHHHHHHhcCCC------CH---hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhc
Q 003148 516 MFARCGDPQRAMQVFRRMEKR------DV---SAWTAAIGAMAMEGNGEQAVELFNEMLRQ-GIKPDSIVFVGVLTACSH 585 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~ 585 (844)
.|-+ ++.+.+..+|..+..+ +. ..|.-++.-- ..+.+..+.+...+... |..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 7788888888766521 11 2455554311 23455555555555432 333333455555566666
Q ss_pred cCcHHHHHHHHHHhHh
Q 003148 586 GGLVNQGWHLFRSMTD 601 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~ 601 (844)
..++++|++++....+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777766655
No 455
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=7.3e+02 Score=26.64 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=112.7
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHH-HH-HHHCCCCCChhHHHHHHH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELF-NE-MLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~-~~-m~~~g~~p~~~t~~~ll~ 581 (844)
..+..+...+++++...++++.--+... ....++|+...|+... ++ |.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 3455566667777777777665433322 2234567777665432 22 222223556555555554
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHH-----------
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSL----------- 647 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l----------- 647 (844)
.+. ...+ ..+-.. ...-..|...+-..|+.++|.+++.+.+++ ||+++
T Consensus 115 tLr-------------~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 115 TLR-------------TVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILE 176 (439)
T ss_pred HHH-------------Hhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHH
Confidence 332 1111 111111 122234677888999999999999888543 33322
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhc---CCCC----CchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECC
Q 003148 648 -LAACQKHQNVDIAAYAAERITEL---DPEK----SGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNG 719 (844)
Q Consensus 648 -l~~~~~~g~~~~a~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 719 (844)
+..|...+|+-.|.-..+++... +|+- ..+|..+..+..+.+.+-++.+.++.+-+-|-.+....-|+.+-.
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 45677788998888887777642 2221 246788888888999999999999999887655554445666544
Q ss_pred EEEEE
Q 003148 720 KVHEF 724 (844)
Q Consensus 720 ~~~~f 724 (844)
.+-.|
T Consensus 257 ~iv~f 261 (439)
T KOG1498|consen 257 SIVSF 261 (439)
T ss_pred hheeE
Confidence 44444
No 456
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.57 E-value=1.3e+02 Score=21.13 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=15.0
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 003148 216 RRDLPKEAVYLFFEMVEEGIKPNSVTMVCVI 246 (844)
Q Consensus 216 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 246 (844)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444333
No 457
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.38 E-value=1.1e+03 Score=28.43 Aligned_cols=231 Identities=14% Similarity=0.083 Sum_probs=104.7
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHH
Q 003148 383 DMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRV 462 (844)
Q Consensus 383 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 462 (844)
..|...|+++.|..+-..-++-=...+-.-.+.|...+++..|.+++-++.+ ++..+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHhcCCHH-HHHHHHH
Confidence 3455667777776654443110001222224456666777777777766633 2222222233333333 5554433
Q ss_pred HHhCCcccChhhHHhHHHH-----c-cccCchH----HHHHHH----HH----H-HHhCCCCchhHHhHHhhhHHhcCCH
Q 003148 463 MLSERIKVDRVTMVGVASA-----C-GYLGALD----LAKWIY----AY----I-EKNGIHCDMQLATALVDMFARCGDP 523 (844)
Q Consensus 463 m~~~g~~p~~~t~~~ll~a-----~-~~~~~~~----~a~~i~----~~----~-~~~g~~~~~~~~~~li~~y~k~g~~ 523 (844)
=+-..+.|...+-..+|.. + .+.++++ .+..-+ +. + .......+.....+...+....|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Confidence 2223344544433332221 1 1122211 121111 11 1 1111122333334445555666676
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH-------------H------------CCCCCChhHHHH
Q 003148 524 QRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEML-------------R------------QGIKPDSIVFVG 578 (844)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------------~------------~g~~p~~~t~~~ 578 (844)
+.+..+-.-|. -|..++.-+.++|.+++|++++..-. . .+-.-...-...
T Consensus 521 e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~ 595 (911)
T KOG2034|consen 521 EELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPP 595 (911)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHH
Confidence 66665544443 24445666677777777776653211 1 010111122234
Q ss_pred HHHHHhcc---CcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 579 VLTACSHG---GLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 579 ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
+++-+.+. .....+..+++-..... -.-+...++.++.+|++.-+
T Consensus 596 ~L~~~~~~~~~~~~~~~i~yl~f~~~~l-~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 596 ILSYFSNWHSEYEENQAIRYLEFCIEVL-GMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHhcCCccccHHHHHHHHHHHHHhc-cCcCHHHHHHHHHHhhcCCc
Confidence 55555554 23455666665554422 22346677888888876554
No 458
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.32 E-value=9.3e+02 Score=27.74 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=55.5
Q ss_pred HhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHH-HHHHH--hcC-----------CCCceehHHHHHHH
Q 003148 250 AKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTA-KQLFG--ECK-----------DRNLVLCNTIMSNY 315 (844)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~--~m~-----------~~~~~~~~~li~~~ 315 (844)
.-.|++..+.+....+ -.|..+...+.+.+.++|-++.. ..-+. .|. -.+...|..-+.-+
T Consensus 308 i~~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL 382 (566)
T PF07575_consen 308 IFEGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGYL 382 (566)
T ss_dssp HHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 3356666666555433 23556667777777777766610 00000 000 00222344444444
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHH
Q 003148 316 VRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMAC 395 (844)
Q Consensus 316 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 395 (844)
...++.. ....+.++..-.-.+.....-++..|...|-.+.++.+...+-..-+. ..-|..-+..+.++|+.....
T Consensus 383 ~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~ 458 (566)
T PF07575_consen 383 SSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVT 458 (566)
T ss_dssp HS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------
T ss_pred HHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHH
Confidence 4333221 444455554444445556667777777777777777776554332111 112233333444444443333
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC----cccccccccc---ccccCChHHHHHHHHHHHhCCc
Q 003148 396 RIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRD----HISWNTMLGG---LTQENMFEEAMELFRVMLSERI 468 (844)
Q Consensus 396 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~ 468 (844)
.+-+. ++..|+..|... ...+.+.+..+. ..++-+-..- ..+.|++.+|.+.+-.+....+
T Consensus 459 ~i~~~-----------ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~ 526 (566)
T PF07575_consen 459 RIADR-----------LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPI 526 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-----------HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCC
Confidence 33222 334444444322 222222222211 1111111111 1334677777777777777667
Q ss_pred ccChhhHHhHHH
Q 003148 469 KVDRVTMVGVAS 480 (844)
Q Consensus 469 ~p~~~t~~~ll~ 480 (844)
.|..+-...+..
T Consensus 527 ~Pk~f~~~LL~d 538 (566)
T PF07575_consen 527 APKSFWPLLLCD 538 (566)
T ss_dssp ------------
T ss_pred CcHHHHHHHHHH
Confidence 776655544443
No 459
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.54 E-value=6.5e+02 Score=25.70 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---------------CchHHHHHHHHHHhCC
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG---------------KWTNVARVRLQMKEQG 705 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~ 705 (844)
.|.++|...++++-+... ......++ ++...| ++..|...+...-..+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 377888888888887766 44555666 555555 5556666666665544
No 460
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.38 E-value=7.1e+02 Score=26.11 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHh---cCChHHH
Q 003148 554 GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGR---AGLLGEA 628 (844)
Q Consensus 554 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~---~g~~~eA 628 (844)
.+.-+.++++.++. .|+. ......+..+.+....++..+-++++... .| +...|...++-... .-.+++.
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 35566777887774 5655 45666777777777777777778887772 23 35556555554432 1234444
Q ss_pred HHHHHhC---------CC------CCC--hH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 629 LDLIKSM---------PV------EPN--DV---IWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 629 ~~~~~~m---------~~------~p~--~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.++|.+. +. .|+ .. ++..+...++..|..|.|..+++-+++++
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4444332 11 111 11 22223334567899999999999999864
No 461
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.04 E-value=6.7e+02 Score=25.72 Aligned_cols=61 Identities=10% Similarity=0.269 Sum_probs=41.7
Q ss_pred CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 003148 371 LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN-----KTVVSWNSLIAGLIKNGDVESAREVFSE 431 (844)
Q Consensus 371 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (844)
-.++..+...++..+++.+++..-.++++.... .|...|..+|......|+..-..++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 344555566777777777777777777766432 4667788888888888887777666653
No 462
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.74 E-value=6.2e+02 Score=25.18 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=81.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH-GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRA 622 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 622 (844)
++..+-+.|+++++...++++.+.+...+..--+.+..+|-+ .|....+++++........-..+ .....++.-|-+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667778888888888888886555554444444444432 34455566666655542211111 2222233222211
Q ss_pred ------CChHHHHHHHHhC--CC--CCChHH-HHHHHH-HHH---h--cC-----CHHHHHHHHHHHHh-----cCCCCC
Q 003148 623 ------GLLGEALDLIKSM--PV--EPNDVI-WGSLLA-ACQ---K--HQ-----NVDIAAYAAERITE-----LDPEKS 675 (844)
Q Consensus 623 ------g~~~eA~~~~~~m--~~--~p~~~~-~~~ll~-~~~---~--~g-----~~~~a~~~~~~~~~-----~~p~~~ 675 (844)
.--.+.+.+++.- |. .+...+ |.-+-+ -|+ . .| -.+.|...|+++++ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123455555553 11 111222 222211 111 1 12 24677778888775 677776
Q ss_pred chHH---HHHHH-HHHcCCchHHHHHHHHHHhCCC
Q 003148 676 GVHV---LLSNI-YASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 676 ~~~~---~l~~~-~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
...- ..+.. |-..|+.++|.++-+..-+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4332 22222 4568999999999888876544
No 463
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.58 E-value=5.8e+02 Score=26.37 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=40.1
Q ss_pred CHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcH
Q 003148 537 DVSAWTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLV 589 (844)
Q Consensus 537 ~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 589 (844)
+-...--+|+++.+ ..+++.|+-.+-+|++.|..|..+.-..++.|.-.-|.-
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlA 177 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNA 177 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCC
Confidence 33344456777755 468899999999999999999888877777777776643
No 464
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=27.38 E-value=1.1e+03 Score=28.10 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC
Q 003148 279 ALVDMYMKCGAVDTAKQLFGECKD 302 (844)
Q Consensus 279 ~Li~~y~~~g~~~~A~~~f~~m~~ 302 (844)
.++.-+.+||+++.|.++..+-..
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456666788888888888877654
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=27.34 E-value=76 Score=32.35 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHhC-CCCC-ChHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 622 AGLLGEALDLIKSM-PVEP-NDVIWGSL-LAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
.|.+.+.-.++.+. ...| |+..|-.- -.-+..++|++-+..++.+.+.++|++|..|.
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 33444444444444 3344 45566431 22345688899999999999999999887664
No 466
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.53 E-value=3.2e+02 Score=24.06 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMV 616 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 616 (844)
+..+-+..+..-.+.|+....-.-|.||.+.+++..|.++|+-.+.+.| +....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 3445556666677899999999999999999999999999998876443 3333565554
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.49 E-value=1e+02 Score=31.53 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=28.5
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 003148 308 CNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLS 345 (844)
Q Consensus 308 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 345 (844)
||..|..-++.|++++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 66778888888888888888888888887655555543
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.09 E-value=2.2e+02 Score=19.97 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=21.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT 581 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 581 (844)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777666666555543
No 469
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.54 E-value=9.1e+02 Score=26.41 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=74.5
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 003148 110 IRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDI 189 (844)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 189 (844)
|.++...| ..++..+....... ++...+.....++....+......+.+.+ -.++..+......++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 56666666 45666555554322 22333333344443222222122222222 245555666677777766666
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 003148 190 VDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELG 269 (844)
Q Consensus 190 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 269 (844)
+....+..-...++...-.+.+.++...+. ++...+....+ .+|...-...+.++...+..+....+- .+.
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~-~al--- 187 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLR-LYL--- 187 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHH-HHH---
Confidence 555555555544454444444455544331 22233333322 234444445555555444432222211 111
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHH
Q 003148 270 MKANALMVNALVDMYMKCGAVDTAKQL 296 (844)
Q Consensus 270 ~~~~~~~~~~Li~~y~~~g~~~~A~~~ 296 (844)
-..|..+-..-+.+....|. +.|...
T Consensus 188 ~d~~~~VR~aA~~al~~lG~-~~A~~~ 213 (410)
T TIGR02270 188 RDSDPEVRFAALEAGLLAGS-RLAWGV 213 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCC-HhHHHH
Confidence 13444444444555555555 334333
No 470
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=25.14 E-value=4.7e+02 Score=23.04 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWG-SLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 666 (844)
..+--++..++.-.|..++|.++++..+-.+.-...| .++..|+...+-++-.++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444556666666777777777777664444433333 355666666555554444333
No 471
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.82 E-value=8.3e+02 Score=25.66 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc------cCcHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCChH
Q 003148 554 GEQAVELFNEMLRQGIKPDSIVFVGVLTACSH------GGLVNQGWHLFRSMTDIHGVSPQI-VHYGCMVDLLGRAGLLG 626 (844)
Q Consensus 554 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~ 626 (844)
.++++.++++....+. |........+.+|-. .-+|..-..+|+.+.. +.|++ ++.|--+ ++++.--.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhhHH
Confidence 3466666666666553 666655555554421 2245555566666555 45553 2333222 233333344
Q ss_pred HHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 627 EALDLIKSMPVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 627 eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
.++..++...-.|. ...|..=...+.+.|..++|...|++++++.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 55555555532221 112333344567778888888888888877776543
No 472
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.73 E-value=66 Score=33.34 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=23.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.|.++.|+++|...++ +.|.. ..|..-.+++.+.+....|++=+....+
T Consensus 127 ~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred Ccchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 4555555555555555 33333 3344444444455555555544444443
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.32 E-value=9.2e+02 Score=26.00 Aligned_cols=29 Identities=10% Similarity=-0.090 Sum_probs=20.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhH
Q 003148 547 AMAMEGNGEQAVELFNEMLRQGIKPDSIV 575 (844)
Q Consensus 547 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 575 (844)
.+...+++..|.++|+++.+..+.|+...
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 34456788888888888888755554433
No 474
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=23.50 E-value=3.3e+02 Score=23.91 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=36.2
Q ss_pred HhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 633 KSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 633 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
-.+.+-|++.+..+-+.||++-+|+..|.+++|-+...-+.....|
T Consensus 76 ~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y 121 (149)
T KOG4077|consen 76 FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVY 121 (149)
T ss_pred hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHH
Confidence 3446789999999999999999999999999998876544433333
No 475
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=23.28 E-value=49 Score=35.53 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHhhcC--CCCcc
Q 003148 132 FGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECG----DIVDGRRVFDEMS--ERNVV 205 (844)
Q Consensus 132 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~~~f~~m~--~~~~~ 205 (844)
.|+.||.++|.+-..+--+......|+..+..++ ||...-.. +.+-..- .-..-+++|+.+. .|+++
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~--n~~d~k~~~~~k~q~~le~F~~I~Iedprv~ 481 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSED--NVCDGKVEEDGKQQGFLELFKKIKIEDPRVV 481 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhccc--ccccccccccccchhHHHHhhcccccCchHH
Q ss_pred ----------cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc------CCchHHHHHHHHHHHhC
Q 003148 206 ----------SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKL------QNLELGDRVCAYIDELG 269 (844)
Q Consensus 206 ----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------~~~~~a~~~~~~~~~~g 269 (844)
.|+.|..++.++-.+. +.-+...+.++..--+-++-+|.+. .+...|.|+-.+.+=.-
T Consensus 482 e~ctk~~~psPy~iL~~cl~Rn~g~~------d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~ 555 (650)
T KOG4334|consen 482 EMCTKCAIPSPYNILRDCLSRNLGWN------DLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQK 555 (650)
T ss_pred HHhhhcCCCCHHHHHHHHHHhhcCCc------ceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHH
Q ss_pred CCcchhHHHHHHHHHHh
Q 003148 270 MKANALMVNALVDMYMK 286 (844)
Q Consensus 270 ~~~~~~~~~~Li~~y~~ 286 (844)
+.|...+|.+|+.+|.+
T Consensus 556 lHPh~~twGSlLriYGr 572 (650)
T KOG4334|consen 556 LHPHLLTWGSLLRIYGR 572 (650)
T ss_pred hCHHhhhHHHHHHHhhh
No 476
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.82 E-value=6.5e+02 Score=27.70 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=76.4
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC-------------CHhHHHHHHHHH----
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR-------------DVSAWTAAIGAM---- 548 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~---- 548 (844)
+.+++-.+++..+.+.| ...+...-||.|.+.+++++|...+++-.+. .+..-..++.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 46677777888777765 1224556789999999999999988865431 222333344432
Q ss_pred -HhcCChHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhccCcHHHHHHHHHHhHh------hcCCCCCcchHHHH
Q 003148 549 -AMEGNGEQAVELFNEMLRQGIKPDS---IVFVGVLTACSHGGLVNQGWHLFRSMTD------IHGVSPQIVHYGCM 615 (844)
Q Consensus 549 -~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~------~~~~~p~~~~~~~l 615 (844)
.+||.. +|..+++-+...|+.... ++|+. -|++.=-+++++..|+.+-+ +.|+..+.+.+.+|
T Consensus 145 QvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 145 QIRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred eccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 345544 577888888888877654 44432 45555567777776664432 13555555555443
No 477
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.76 E-value=2.4e+03 Score=30.41 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCh---hHHHHH---HHHHh-ccCcHHHHHHHHHHhHhh-cCCCCCcchHHHHHHH
Q 003148 547 AMAMEGNGEQAVELFNEMLRQGIKPDS---IVFVGV---LTACS-HGGLVNQGWHLFRSMTDI-HGVSPQIVHYGCMVDL 618 (844)
Q Consensus 547 ~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~l---l~a~~-~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~ 618 (844)
...+||-++.++..+.++-. -|+. ..|..+ +..+. ..+....|.++.+..--. +..+-..+.++--+..
T Consensus 2745 vArkh~l~~vcl~~L~~iyt---lp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f 2821 (3550)
T KOG0889|consen 2745 VARKHGLPDVCLNQLAKIYT---LPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMF 2821 (3550)
T ss_pred HHHhcCChHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHH
Confidence 34467777777777776665 2332 222222 22222 223556666666544221 1122224556666677
Q ss_pred HHhcCChHHHHHHHHhC-----CCCCChHHHHHHHH-HHHhcC-CHHHHHHHHH
Q 003148 619 LGRAGLLGEALDLIKSM-----PVEPNDVIWGSLLA-ACQKHQ-NVDIAAYAAE 665 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-----~~~p~~~~~~~ll~-~~~~~g-~~~~a~~~~~ 665 (844)
..+.|+.++|.+.|..+ +..-....|...+. .+.+.+ +...|..+.-
T Consensus 2822 ~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avs 2875 (3550)
T KOG0889|consen 2822 LEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVS 2875 (3550)
T ss_pred HHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 88999999999998876 22223445554433 233333 3555555544
No 478
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.13 E-value=99 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHcCccCCCCCc
Q 003148 733 EMNNISSMLREMNCRLRDAGYVPDLTNV 760 (844)
Q Consensus 733 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~ 760 (844)
...++...+++...+++..|+.||-..+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3456777888889999999999997554
No 479
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.45 E-value=5.8e+02 Score=27.05 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcc--hHH
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPE--MNN 736 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~--~~~ 736 (844)
.-+++.-++--.+|+|+.....+ +|.+++++++++|- + +| -..++|+....- ..+
T Consensus 29 ~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Ge--d-----ve-----VA~VsG~~~~~v~ad~~ 85 (344)
T PF04123_consen 29 AVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGE--D-----VE-----VAVVSGSPDVGVEADRK 85 (344)
T ss_pred HHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCC--C-----eE-----EEEEECCCCCchhhHHH
Confidence 34455556666899998877766 57899999998873 1 11 246778654422 233
Q ss_pred HHHHHHHHHHHHHHcCccCCCCCcccccchHHH
Q 003148 737 ISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEK 769 (844)
Q Consensus 737 i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 769 (844)
|.++++++.+ .+.||...+..|-.|++.
T Consensus 86 I~~qld~vl~-----~~~~~~~i~VsDGaeDE~ 113 (344)
T PF04123_consen 86 IAEQLDEVLS-----KFDPDSAIVVSDGAEDER 113 (344)
T ss_pred HHHHHHHHHH-----hCCCCEEEEEecChhhhh
Confidence 4455555443 467777666666655544
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.36 E-value=4.3e+02 Score=29.71 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC--Ccc---cHHHHHHHHHhCCCchHHHHHHHHHHHc
Q 003148 177 NCLINFYGECGDIVDGRRVFDEMSER--NVV---SWTSLICACARRDLPKEAVYLFFEMVEE 233 (844)
Q Consensus 177 ~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~ 233 (844)
..|+.-|.+++++++|..++..|.-- ... +.+.+...+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45788999999999999999998632 112 3344455556655555555566665544
No 481
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.69 E-value=9.5e+02 Score=24.86 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=79.2
Q ss_pred HHHHHHHHHhc-C-CCCHhHHHHHHHHHHhc----C-ChHHHH--------HHHHHH-HHCCCCCC--h----hHHHHH-
Q 003148 523 PQRAMQVFRRM-E-KRDVSAWTAAIGAMAME----G-NGEQAV--------ELFNEM-LRQGIKPD--S----IVFVGV- 579 (844)
Q Consensus 523 ~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~----g-~~~~A~--------~l~~~m-~~~g~~p~--~----~t~~~l- 579 (844)
++.+.+++..+ . +.+...|..++..+..- . ..+... .++..+ .+.|..+. . ..+...
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~ 135 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALL 135 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHH
Confidence 45666666666 3 56677777766543321 1 111111 122222 22355554 2 222222
Q ss_pred HH-HHhccCcHHHHHHHHHHhHhhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 003148 580 LT-ACSHGGLVNQGWHLFRSMTDIHGV---SPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQ 655 (844)
Q Consensus 580 l~-a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 655 (844)
+. +|...+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccC
Confidence 33 342334477888999988772111 33444555566666777876665555555544557777888888888888
Q ss_pred CHHHHHHHHHHHHhc
Q 003148 656 NVDIAAYAAERITEL 670 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~ 670 (844)
+.+.-.++++.++.-
T Consensus 216 d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 216 DPELLKRLLDLLLSN 230 (324)
T ss_dssp -HHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHcCC
Confidence 888888888888873
No 482
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=20.56 E-value=1.6e+03 Score=27.56 Aligned_cols=184 Identities=12% Similarity=0.032 Sum_probs=79.6
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCC
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENM 452 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 452 (844)
+|..+..+.++.+...+.- ....+...+.++|...-...+.++.+.+..+.. ......++...=...+.++...+.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l---~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV---AGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH---HHHhcCCCHHHHHHHHHHHHHhcc
Confidence 3444545555555443311 122334444555555555555555555443322 222222333322333334444443
Q ss_pred hH-HHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHH
Q 003148 453 FE-EAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFR 531 (844)
Q Consensus 453 ~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 531 (844)
.+ .+...+..+.. .+|...-...+.++...+..+.....+..+.+ .++..+-...+.++.+.+..+....+..
T Consensus 772 ~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~a~~~L~~ 845 (897)
T PRK13800 772 GGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADVAVPALVE 845 (897)
T ss_pred ccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccchHHHHHH
Confidence 22 23344444443 23444445555555555544333222222222 2344444555555555554333333333
Q ss_pred hcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 532 RMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 532 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.+.+++...-...+.++.+.+....+...+...++
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 34455555555555555554323345555554444
No 483
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=20.38 E-value=34 Score=24.86 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=10.4
Q ss_pred cccCCchhhhhHhhh
Q 003148 801 LRLCCDCHSFAKLVS 815 (844)
Q Consensus 801 l~~c~~~h~~~~~~s 815 (844)
.-+|||||.--.+=+
T Consensus 20 iYiCgdC~~en~lk~ 34 (62)
T KOG3507|consen 20 IYICGDCGQENTLKR 34 (62)
T ss_pred EEEeccccccccccC
Confidence 468999997654443
No 484
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.36 E-value=5.1e+02 Score=21.87 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 003148 280 LVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 280 Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
++.-|...|++++|.+-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 3344444445555544444444
No 485
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=9.4e+02 Score=27.29 Aligned_cols=104 Identities=21% Similarity=0.187 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCC---------CC-cchHHHHHHHHHhcCChHHHHHHHHhC---------C-------
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVS---------PQ-IVHYGCMVDLLGRAGLLGEALDLIKSM---------P------- 636 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~---------p~-~~~~~~li~~~~~~g~~~eA~~~~~~m---------~------- 636 (844)
+.+...++++.+.|...+..+... |= +...-.|.+++-..|+.+-|.+++++. +
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred -------CCCChHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH
Q 003148 637 -------VEPNDVIWGSL---LAACQKHQNVDIAAYAAERITELDPE-KSGVHVLLSNIYA 686 (844)
Q Consensus 637 -------~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 686 (844)
..-|...|-+| +....+.|-..-|.+..+.++.++|. ||-....+.++|+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 486
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.18 E-value=1e+03 Score=25.02 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHh------cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH
Q 003148 521 GDPQRAMQVFRRME---KRDVSAWTAAIGAMAM------EGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 521 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 590 (844)
+-++++..++++.. .+......+.|.++-. .-++.....+|+-+.. +.|+. ++.|-- -+.+...-.+
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRA-VAla~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRA-VALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHH-HHHHHhhhHH
Confidence 34677777777654 4566677777766532 2367777888888888 77887 455443 3455555677
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChH
Q 003148 591 QGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV 642 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~ 642 (844)
.|+...+-+..+-++.--...+..-.+++.+.|+.+||.+-|++. .+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 788887777663223222334456688999999999999999987 5555443
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.12 E-value=1.6e+03 Score=27.13 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=107.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-----H-h
Q 003148 278 NALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSA-----S-A 351 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-----~-~ 351 (844)
..-.+.|...+++..|-+++-++ ..++..+.--|....+.+ ++..|-.=+-..++|...+=..+|.. + .
T Consensus 393 ~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~ 467 (911)
T KOG2034|consen 393 LKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLE 467 (911)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Confidence 33345556666677777666665 233444444455555544 44444333333344544443332222 1 2
Q ss_pred hcCChh----hHHHHHHH----H----HH-hCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 003148 352 QLGDLL----CGRMCHGY----V----LR-NGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIK 418 (844)
Q Consensus 352 ~~~~~~----~a~~i~~~----~----~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 418 (844)
+.++++ .+..-+.. . .+ .....+.....+........|+.+....+-.-|.+ |..++.-+++
T Consensus 468 ~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q 542 (911)
T KOG2034|consen 468 QLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYWIQ 542 (911)
T ss_pred HHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 233322 12111111 1 11 11122333344555566667777766655555443 6667778888
Q ss_pred cCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccC---chHHHHHHH
Q 003148 419 NGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLG---ALDLAKWIY 495 (844)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~i~ 495 (844)
.+.+++|++++..-..+...- -+--. .....+.+....+..+.+ ..+..-...++.-+.+.+ ....+....
T Consensus 543 ~e~yeeaLevL~~~~~~el~y--k~ap~-Li~~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl 616 (911)
T KOG2034|consen 543 QENYEEALEVLLNQRNPELFY--KYAPE-LITHSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYL 616 (911)
T ss_pred HHHHHHHHHHHHhccchhhHH--HhhhH-HHhcCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHH
Confidence 888888888887664432210 00000 011122333333332221 112223334444444442 233334444
Q ss_pred HHHHHhCCCCchhHHhHHhhhHHhcCC
Q 003148 496 AYIEKNGIHCDMQLATALVDMFARCGD 522 (844)
Q Consensus 496 ~~~~~~g~~~~~~~~~~li~~y~k~g~ 522 (844)
......--..++.++|.++.+|++..+
T Consensus 617 ~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 617 EFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 444444445578888888888886544
Done!