Query 003148
Match_columns 844
No_of_seqs 905 out of 5240
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.7E-42 1.6E-46 399.1 31.5 527 42-686 33-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-40 5E-45 386.5 36.3 479 183-704 63-579 (597)
3 4g26_A Pentatricopeptide repea 99.9 3.3E-27 1.1E-31 262.7 18.5 202 86-287 9-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 3.1E-27 1E-31 263.0 15.9 213 120-354 7-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4E-24 1.4E-28 233.5 35.4 367 314-690 8-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-23 5.5E-28 228.7 34.5 348 348-704 7-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 2E-21 6.8E-26 220.5 27.7 444 206-681 8-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.9E-21 1.4E-25 218.1 30.0 422 274-704 6-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 215.8 26.8 320 373-700 24-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.7E-20 1.3E-24 211.4 34.1 431 205-704 26-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.6E-19 5.4E-24 201.2 32.6 360 272-693 24-443 (450)
12 3fp2_A TPR repeat-containing p 99.8 7.5E-19 2.5E-23 200.6 28.2 444 103-679 25-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 1.5E-15 5E-20 178.0 51.8 483 169-699 721-1340(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 1.6E-15 5.5E-20 177.6 50.1 575 59-697 720-1377(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.7E-17 5.9E-22 178.1 27.5 302 374-704 2-335 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 2E-17 7E-22 177.5 25.0 318 340-687 3-352 (359)
17 1b89_A Protein (clathrin heavy 99.7 9.2E-17 3.1E-21 169.9 22.1 320 286-672 15-343 (449)
18 1b89_A Protein (clathrin heavy 99.7 1.7E-16 5.9E-21 167.8 23.0 230 65-334 7-236 (449)
19 3hym_B Cell division cycle pro 99.7 2.1E-16 7.2E-21 167.5 23.8 285 374-691 21-321 (330)
20 3hym_B Cell division cycle pro 99.7 4E-16 1.4E-20 165.4 24.4 262 435-703 20-298 (330)
21 1fch_A Peroxisomal targeting s 99.7 1.2E-16 4E-21 172.6 20.1 276 418-700 37-355 (368)
22 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 7.8E-19 162.9 38.1 405 273-704 12-492 (530)
23 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8E-20 156.0 24.7 270 385-698 9-288 (291)
24 2xm6_A Protein corresponding t 99.7 2.7E-14 9.1E-19 160.6 33.6 366 273-687 38-452 (490)
25 4eqf_A PEX5-related protein; a 99.7 1.8E-16 6.1E-21 171.1 15.1 258 436-700 64-352 (365)
26 1fch_A Peroxisomal targeting s 99.7 1.7E-15 5.8E-20 163.4 20.7 255 447-704 35-314 (368)
27 4eqf_A PEX5-related protein; a 99.7 1E-15 3.6E-20 165.0 18.5 231 471-704 64-310 (365)
28 4g1t_A Interferon-induced prot 99.7 7.3E-15 2.5E-19 164.5 25.4 240 450-706 188-461 (472)
29 3mkr_A Coatomer subunit epsilo 99.7 6.5E-15 2.2E-19 152.7 21.7 242 449-705 11-265 (291)
30 2ooe_A Cleavage stimulation fa 99.6 1.5E-13 5.3E-18 156.1 33.9 414 203-673 12-495 (530)
31 3spa_A Mtrpol, DNA-directed RN 99.6 1.1E-16 3.7E-21 182.0 7.2 132 170-301 124-263 (1134)
32 2xm6_A Protein corresponding t 99.6 1.8E-13 6E-18 153.9 33.1 352 303-705 37-433 (490)
33 3cv0_A Peroxisome targeting si 99.6 3.9E-15 1.3E-19 157.5 17.8 257 438-701 22-312 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.6 3.6E-16 1.2E-20 177.8 7.7 165 502-669 122-309 (1134)
35 2pl2_A Hypothetical conserved 99.6 1.4E-14 4.9E-19 143.2 17.3 194 504-702 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.6 1.6E-13 5.6E-18 139.3 20.8 216 475-704 8-236 (258)
37 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-13 6.5E-18 140.4 20.6 250 440-698 8-269 (275)
38 3cv0_A Peroxisome targeting si 99.5 2.9E-13 1E-17 142.9 21.9 226 473-704 22-269 (327)
39 4g1t_A Interferon-induced prot 99.5 3.5E-12 1.2E-16 142.6 30.0 388 204-682 51-471 (472)
40 3u4t_A TPR repeat-containing p 99.5 4E-13 1.4E-17 137.9 16.9 237 446-689 12-269 (272)
41 3uq3_A Heat shock protein STI1 99.5 3.4E-13 1.2E-17 136.9 16.0 231 439-683 7-255 (258)
42 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-12 9.3E-17 130.0 20.6 195 507-704 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.5 4.7E-12 1.6E-16 125.4 21.3 197 505-704 6-211 (225)
44 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-12 5.2E-17 130.9 16.0 196 505-704 21-222 (243)
45 3vtx_A MAMA; tetratricopeptide 99.4 3.6E-12 1.2E-16 122.2 17.9 163 537-704 4-170 (184)
46 2h6f_A Protein farnesyltransfe 99.4 4.3E-12 1.5E-16 136.0 20.2 223 474-703 99-347 (382)
47 3e4b_A ALGK; tetratricopeptide 99.4 1.3E-11 4.5E-16 136.5 22.6 343 311-706 9-389 (452)
48 4abn_A Tetratricopeptide repea 99.4 1.4E-12 4.6E-17 145.4 14.7 192 505-701 100-318 (474)
49 2h6f_A Protein farnesyltransfe 99.4 2.8E-12 9.6E-17 137.4 16.6 241 439-687 99-365 (382)
50 2ho1_A Type 4 fimbrial biogene 99.4 1.9E-11 6.6E-16 123.6 21.8 198 478-679 43-247 (252)
51 2q7f_A YRRB protein; TPR, prot 99.4 3.3E-12 1.1E-16 128.4 15.6 211 436-687 22-239 (243)
52 1ouv_A Conserved hypothetical 99.4 5.7E-11 2E-15 121.9 24.8 214 480-705 14-252 (273)
53 3e4b_A ALGK; tetratricopeptide 99.4 1.5E-11 5.3E-16 135.9 21.9 368 248-702 12-419 (452)
54 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.8E-12 2.7E-16 128.3 17.6 218 482-705 15-245 (275)
55 2vq2_A PILW, putative fimbrial 99.4 2.7E-11 9.3E-16 119.8 20.8 203 475-681 11-222 (225)
56 4gyw_A UDP-N-acetylglucosamine 99.4 4.7E-12 1.6E-16 146.6 16.9 162 537-703 8-173 (723)
57 2pl2_A Hypothetical conserved 99.4 9.9E-12 3.4E-16 122.7 16.2 182 480-667 13-211 (217)
58 3vtx_A MAMA; tetratricopeptide 99.3 1.3E-11 4.5E-16 118.2 15.2 165 506-675 4-175 (184)
59 3u4t_A TPR repeat-containing p 99.3 4.5E-11 1.5E-15 122.4 20.1 193 509-704 5-208 (272)
60 4a1s_A PINS, partner of inscut 99.3 2.7E-12 9.3E-17 140.6 11.4 258 445-704 56-372 (411)
61 1ouv_A Conserved hypothetical 99.3 5.8E-11 2E-15 121.8 20.7 225 437-675 6-256 (273)
62 3sf4_A G-protein-signaling mod 99.3 1.1E-11 3.7E-16 135.2 15.1 260 443-704 15-336 (406)
63 3ro2_A PINS homolog, G-protein 99.3 9.3E-12 3.2E-16 131.6 13.4 258 445-704 13-332 (338)
64 4e6h_A MRNA 3'-END-processing 99.3 5.2E-09 1.8E-13 119.6 34.5 215 456-675 328-575 (679)
65 4abn_A Tetratricopeptide repea 99.2 6.6E-11 2.3E-15 131.7 16.7 178 522-704 83-287 (474)
66 3sf4_A G-protein-signaling mod 99.2 1.4E-11 4.7E-16 134.4 10.5 290 373-693 7-365 (406)
67 2ond_A Cleavage stimulation fa 99.2 5.1E-10 1.7E-14 117.0 21.3 215 454-675 33-275 (308)
68 4a1s_A PINS, partner of inscut 99.2 2.1E-11 7.1E-16 133.5 10.5 268 375-673 48-375 (411)
69 2ond_A Cleavage stimulation fa 99.2 5.7E-10 2E-14 116.7 21.1 211 489-705 33-271 (308)
70 4i17_A Hypothetical protein; T 99.2 2.3E-10 8E-15 113.7 17.0 187 506-704 6-209 (228)
71 3as5_A MAMA; tetratricopeptide 99.2 2E-10 6.9E-15 109.5 15.9 159 541-704 11-173 (186)
72 4i17_A Hypothetical protein; T 99.2 3.5E-10 1.2E-14 112.5 18.0 203 471-685 6-224 (228)
73 4e6h_A MRNA 3'-END-processing 99.2 2.3E-08 7.8E-13 114.4 34.8 450 84-573 49-574 (679)
74 3nf1_A KLC 1, kinesin light ch 99.2 1E-10 3.5E-15 122.2 14.3 232 472-703 27-306 (311)
75 3ro2_A PINS homolog, G-protein 99.2 9E-11 3.1E-15 123.9 11.3 266 377-673 7-335 (338)
76 3nf1_A KLC 1, kinesin light ch 99.2 3.5E-11 1.2E-15 125.8 7.7 234 440-673 30-310 (311)
77 3as5_A MAMA; tetratricopeptide 99.1 1.2E-09 4E-14 104.1 17.1 167 507-677 8-180 (186)
78 3ulq_A Response regulator aspa 99.1 2.4E-10 8.3E-15 123.7 13.5 220 483-703 114-367 (383)
79 4gyw_A UDP-N-acetylglucosamine 99.1 2.9E-10 1E-14 131.6 13.7 163 506-673 8-177 (723)
80 3ulq_A Response regulator aspa 99.1 2.6E-09 8.8E-14 115.6 20.0 165 508-672 185-370 (383)
81 1hz4_A MALT regulatory protein 99.1 1.2E-08 4E-13 109.8 24.4 258 447-704 24-322 (373)
82 3q15_A PSP28, response regulat 99.0 6.4E-09 2.2E-13 112.2 20.2 194 509-703 143-364 (378)
83 4ga2_A E3 SUMO-protein ligase 99.0 1.5E-10 5.1E-15 106.5 5.9 138 548-690 7-149 (150)
84 3edt_B KLC 2, kinesin light ch 99.0 1.7E-09 5.8E-14 110.9 13.6 220 484-703 13-280 (283)
85 3qky_A Outer membrane assembly 99.0 7.6E-09 2.6E-13 105.1 18.0 202 506-750 14-247 (261)
86 2pzi_A Probable serine/threoni 99.0 2.3E-09 8E-14 124.8 14.4 167 518-690 402-583 (681)
87 1qqe_A Vesicular transport pro 99.0 1.6E-09 5.5E-14 112.2 11.4 198 487-701 32-266 (292)
88 1qqe_A Vesicular transport pro 99.0 7.6E-09 2.6E-13 107.1 15.4 193 482-679 47-278 (292)
89 3qou_A Protein YBBN; thioredox 98.9 9.1E-09 3.1E-13 106.1 15.5 176 522-702 101-282 (287)
90 3mv2_B Coatomer subunit epsilo 98.9 1E-07 3.5E-12 96.6 22.4 175 526-705 85-283 (310)
91 4ga2_A E3 SUMO-protein ligase 98.9 2.9E-09 9.8E-14 97.8 9.6 122 579-703 3-128 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.6E-08 1.2E-12 97.5 18.2 178 509-706 6-215 (225)
93 3qky_A Outer membrane assembly 98.9 1.7E-08 5.8E-13 102.5 15.4 201 471-692 14-249 (261)
94 3edt_B KLC 2, kinesin light ch 98.9 3.6E-08 1.2E-12 100.8 16.8 222 450-671 14-282 (283)
95 2r5s_A Uncharacterized protein 98.9 8.4E-09 2.9E-13 97.7 10.9 156 543-703 11-172 (176)
96 3rjv_A Putative SEL1 repeat pr 98.8 1.6E-07 5.3E-12 91.9 19.5 171 526-705 5-198 (212)
97 1hz4_A MALT regulatory protein 98.8 3.3E-07 1.1E-11 98.4 23.8 224 481-704 23-282 (373)
98 2fo7_A Synthetic consensus TPR 98.8 4.5E-08 1.6E-12 87.2 14.2 128 540-703 3-131 (136)
99 2fo7_A Synthetic consensus TPR 98.8 3.6E-08 1.2E-12 87.8 13.3 95 611-705 3-99 (136)
100 3urz_A Uncharacterized protein 98.8 3E-08 1E-12 96.7 12.7 153 516-674 13-190 (208)
101 2pzi_A Probable serine/threoni 98.8 8.7E-08 3E-12 111.5 18.5 190 483-679 402-611 (681)
102 3q15_A PSP28, response regulat 98.8 7E-08 2.4E-12 104.0 16.5 231 441-671 105-366 (378)
103 3urz_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 96.1 12.9 159 540-704 6-186 (208)
104 4gco_A Protein STI-1; structur 98.8 2.4E-08 8.3E-13 88.4 10.5 99 605-703 8-109 (126)
105 2vsy_A XCC0866; transferase, g 98.8 2.5E-08 8.7E-13 113.9 13.3 158 520-682 2-169 (568)
106 3gyz_A Chaperone protein IPGC; 98.8 1.9E-08 6.4E-13 92.0 9.7 101 604-704 30-133 (151)
107 2vgx_A Chaperone SYCD; alterna 98.8 1.5E-08 5.3E-13 92.6 9.0 100 605-704 16-118 (148)
108 2vsy_A XCC0866; transferase, g 98.8 5.4E-08 1.8E-12 111.2 15.0 144 486-635 3-154 (568)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 8E-08 2.7E-12 100.1 14.9 219 450-696 4-253 (307)
110 4gco_A Protein STI-1; structur 98.7 3.3E-08 1.1E-12 87.5 9.5 113 569-684 8-124 (126)
111 2qfc_A PLCR protein; TPR, HTH, 98.7 6.4E-07 2.2E-11 92.5 19.0 165 539-703 76-265 (293)
112 2ifu_A Gamma-SNAP; membrane fu 98.7 5.9E-08 2E-12 101.1 11.0 196 485-702 4-222 (307)
113 2yhc_A BAMD, UPF0169 lipoprote 98.7 5E-07 1.7E-11 89.2 16.9 182 474-676 6-219 (225)
114 2xcb_A PCRH, regulatory protei 98.7 9.3E-08 3.2E-12 86.7 10.4 100 605-704 13-115 (142)
115 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.7E-12 89.2 11.9 154 510-669 9-172 (176)
116 3dra_A Protein farnesyltransfe 98.6 1.4E-06 4.7E-11 89.3 19.9 209 489-703 50-286 (306)
117 3u3w_A Transcriptional activat 98.6 2E-06 6.9E-11 88.7 21.2 160 544-703 81-265 (293)
118 2c2l_A CHIP, carboxy terminus 98.6 5.8E-08 2E-12 99.6 9.3 191 506-704 3-199 (281)
119 1p5q_A FKBP52, FK506-binding p 98.6 1.4E-08 4.8E-13 107.3 3.5 161 520-702 126-292 (336)
120 3qou_A Protein YBBN; thioredox 98.6 3.3E-07 1.1E-11 94.3 13.0 156 508-668 118-282 (287)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.2E-06 4.1E-11 85.4 16.4 144 510-674 9-154 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.6E-07 2.3E-11 87.3 14.2 125 576-705 9-151 (213)
123 2uy1_A Cleavage stimulation fa 98.6 1.1E-05 3.7E-10 89.5 25.5 372 251-669 6-412 (493)
124 3mv2_B Coatomer subunit epsilo 98.6 7.8E-07 2.7E-11 90.2 14.5 167 505-678 98-290 (310)
125 3rjv_A Putative SEL1 repeat pr 98.5 4.1E-06 1.4E-10 81.6 17.8 172 491-672 5-199 (212)
126 3upv_A Heat shock protein STI1 98.5 5.8E-07 2E-11 79.3 10.6 95 610-704 5-101 (126)
127 2vgx_A Chaperone SYCD; alterna 98.5 1.9E-07 6.4E-12 85.3 6.9 109 569-680 16-128 (148)
128 1a17_A Serine/threonine protei 98.5 1.1E-06 3.6E-11 81.7 12.2 125 576-703 16-145 (166)
129 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.4E-11 76.3 12.0 113 575-689 11-125 (125)
130 3gyz_A Chaperone protein IPGC; 98.5 7.8E-07 2.7E-11 81.1 10.7 104 569-675 31-138 (151)
131 4f3v_A ESX-1 secretion system 98.5 2.8E-07 9.6E-12 92.2 8.2 181 519-704 18-237 (282)
132 2e2e_A Formate-dependent nitri 98.4 7.6E-07 2.6E-11 84.0 10.8 117 585-704 22-144 (177)
133 1wao_1 Serine/threonine protei 98.4 9.3E-07 3.2E-11 97.9 13.0 116 582-700 15-135 (477)
134 2vyi_A SGTA protein; chaperone 98.4 1.3E-06 4.5E-11 77.0 11.4 115 575-692 14-131 (131)
135 2lni_A Stress-induced-phosphop 98.4 1.2E-06 4.1E-11 77.7 11.0 80 611-690 52-133 (133)
136 2e2e_A Formate-dependent nitri 98.4 1E-06 3.5E-11 83.1 9.9 126 550-680 22-154 (177)
137 3u3w_A Transcriptional activat 98.4 3.6E-05 1.2E-09 79.2 22.5 158 513-670 81-266 (293)
138 1hxi_A PEX5, peroxisome target 98.4 6.9E-07 2.3E-11 78.2 7.9 96 609-704 17-114 (121)
139 2xcb_A PCRH, regulatory protei 98.4 4.6E-07 1.6E-11 82.0 6.7 111 569-682 13-127 (142)
140 3dra_A Protein farnesyltransfe 98.4 4.9E-05 1.7E-09 77.8 22.6 224 452-683 48-301 (306)
141 4f3v_A ESX-1 secretion system 98.3 6.8E-07 2.3E-11 89.4 7.6 137 541-682 105-248 (282)
142 2kck_A TPR repeat; tetratricop 98.3 2.4E-06 8.4E-11 72.9 10.3 97 609-705 6-107 (112)
143 4gcn_A Protein STI-1; structur 98.3 1.4E-06 5E-11 76.9 8.7 93 611-703 10-111 (127)
144 2fbn_A 70 kDa peptidylprolyl i 98.3 3.6E-07 1.2E-11 88.1 4.8 170 513-703 10-185 (198)
145 2uy1_A Cleavage stimulation fa 98.3 2.1E-05 7E-10 87.2 19.6 168 524-701 196-380 (493)
146 1wao_1 Serine/threonine protei 98.3 3.2E-06 1.1E-10 93.6 13.0 119 510-633 9-134 (477)
147 2qfc_A PLCR protein; TPR, HTH, 98.3 1.8E-05 6.3E-10 81.4 17.8 163 508-670 76-266 (293)
148 3gw4_A Uncharacterized protein 98.3 1.1E-05 3.7E-10 77.7 15.1 93 611-703 68-175 (203)
149 2lni_A Stress-induced-phosphop 98.3 6.3E-06 2.2E-10 72.9 12.3 96 609-704 16-113 (133)
150 3sz7_A HSC70 cochaperone (SGT) 98.3 2.3E-06 8E-11 79.5 9.7 93 611-703 13-107 (164)
151 3gw4_A Uncharacterized protein 98.3 5.6E-06 1.9E-10 79.7 12.6 153 519-671 4-177 (203)
152 3rkv_A Putative peptidylprolyl 98.3 4E-06 1.4E-10 77.7 10.7 64 641-704 63-126 (162)
153 3sz7_A HSC70 cochaperone (SGT) 98.3 4.3E-06 1.5E-10 77.7 10.9 107 574-683 12-121 (164)
154 3q49_B STIP1 homology and U bo 98.3 5E-06 1.7E-10 74.2 10.8 97 608-704 8-106 (137)
155 1elw_A TPR1-domain of HOP; HOP 98.2 8.9E-06 3E-10 70.0 12.1 93 611-703 6-100 (118)
156 3upv_A Heat shock protein STI1 98.2 4E-06 1.4E-10 73.8 9.7 107 576-685 7-122 (126)
157 2dba_A Smooth muscle cell asso 98.2 1E-05 3.6E-10 73.1 12.6 95 609-703 28-127 (148)
158 1na0_A Designed protein CTPR3; 98.2 1.3E-05 4.6E-10 69.6 12.9 96 609-704 9-106 (125)
159 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 4.7E-07 1.6E-11 99.9 3.9 163 519-703 246-414 (457)
160 3q7a_A Farnesyltransferase alp 98.2 3.4E-05 1.2E-09 79.9 17.3 230 451-704 51-331 (349)
161 1elw_A TPR1-domain of HOP; HOP 98.2 1E-05 3.4E-10 69.7 11.4 107 576-685 7-116 (118)
162 2xev_A YBGF; tetratricopeptide 98.2 6.9E-06 2.4E-10 72.4 10.3 92 613-704 6-105 (129)
163 2hr2_A Hypothetical protein; a 98.2 3.7E-06 1.3E-10 75.8 8.4 63 642-704 58-131 (159)
164 1a17_A Serine/threonine protei 98.2 1.3E-05 4.4E-10 74.1 12.4 126 539-669 14-145 (166)
165 2dba_A Smooth muscle cell asso 98.2 1.4E-05 4.7E-10 72.3 12.3 107 576-685 31-143 (148)
166 2vyi_A SGTA protein; chaperone 98.2 1.6E-05 5.4E-10 69.9 12.1 96 609-704 12-109 (131)
167 1p5q_A FKBP52, FK506-binding p 98.1 9.3E-06 3.2E-10 85.4 11.8 118 506-628 146-283 (336)
168 1dce_A Protein (RAB geranylger 98.1 4.2E-05 1.4E-09 86.1 17.7 168 521-693 43-244 (567)
169 4gcn_A Protein STI-1; structur 98.1 8.7E-06 3E-10 71.8 9.6 61 539-601 9-70 (127)
170 2kck_A TPR repeat; tetratricop 98.1 1.3E-05 4.4E-10 68.2 9.9 99 574-675 7-111 (112)
171 3q49_B STIP1 homology and U bo 98.1 9.8E-06 3.3E-10 72.3 9.0 97 574-673 10-109 (137)
172 2hr2_A Hypothetical protein; a 98.1 5E-06 1.7E-10 75.0 6.6 116 540-681 13-142 (159)
173 1hxi_A PEX5, peroxisome target 98.1 9.1E-06 3.1E-10 70.9 8.1 97 576-675 20-119 (121)
174 1elr_A TPR2A-domain of HOP; HO 98.0 2.3E-05 8E-10 68.8 10.5 95 610-704 5-108 (131)
175 3k9i_A BH0479 protein; putativ 98.0 3.5E-06 1.2E-10 73.2 4.9 84 621-704 2-90 (117)
176 2fbn_A 70 kDa peptidylprolyl i 98.0 4.4E-05 1.5E-09 73.3 13.0 94 611-704 40-151 (198)
177 3dss_A Geranylgeranyl transfer 98.0 0.00019 6.6E-09 73.9 18.3 176 523-703 90-303 (331)
178 3ro3_A PINS homolog, G-protein 98.0 9E-06 3.1E-10 74.6 7.2 93 611-703 51-157 (164)
179 3dss_A Geranylgeranyl transfer 98.0 0.00036 1.2E-08 71.8 19.5 191 488-685 90-319 (331)
180 4b4t_Q 26S proteasome regulato 98.0 3.2E-05 1.1E-09 84.6 12.4 187 517-703 14-244 (434)
181 2xev_A YBGF; tetratricopeptide 98.0 5.6E-05 1.9E-09 66.4 11.6 99 580-681 9-116 (129)
182 3rkv_A Putative peptidylprolyl 98.0 1.2E-05 4.1E-10 74.4 7.4 76 609-684 63-141 (162)
183 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.5E-10 84.3 8.5 147 539-705 180-329 (338)
184 2c2l_A CHIP, carboxy terminus 98.0 2.2E-05 7.6E-10 80.2 10.0 103 573-678 4-109 (281)
185 1elr_A TPR2A-domain of HOP; HO 98.0 1.5E-05 5E-10 70.1 7.5 113 540-686 6-123 (131)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 8.9E-06 3E-10 85.6 6.9 113 575-704 181-293 (338)
187 3k9i_A BH0479 protein; putativ 97.9 6E-06 2E-10 71.6 4.4 94 586-679 3-99 (117)
188 3n71_A Histone lysine methyltr 97.9 3.4E-05 1.2E-09 84.7 11.2 122 584-705 320-465 (490)
189 1ihg_A Cyclophilin 40; ppiase 97.9 2.8E-05 9.5E-10 82.8 9.9 136 539-696 224-362 (370)
190 3q7a_A Farnesyltransferase alp 97.9 0.00027 9.2E-09 73.1 15.9 167 520-691 67-258 (349)
191 1ihg_A Cyclophilin 40; ppiase 97.8 5.8E-05 2E-09 80.3 10.9 111 575-704 225-336 (370)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 5.5E-05 1.9E-09 83.2 11.0 64 641-704 317-380 (457)
193 3ro3_A PINS homolog, G-protein 97.8 5.9E-05 2E-09 69.0 9.6 132 541-672 12-160 (164)
194 2kat_A Uncharacterized protein 97.7 6E-05 2.1E-09 64.8 7.6 78 627-704 3-82 (115)
195 1zu2_A Mitochondrial import re 97.7 1.5E-05 5E-10 71.8 3.5 86 620-705 13-121 (158)
196 3ma5_A Tetratricopeptide repea 97.7 0.00011 3.6E-09 61.4 8.6 65 640-704 6-70 (100)
197 4b4t_Q 26S proteasome regulato 97.7 0.00017 5.7E-09 78.8 12.6 158 546-703 12-203 (434)
198 2l6j_A TPR repeat-containing p 97.7 4.3E-05 1.5E-09 65.0 6.1 90 609-698 4-101 (111)
199 3n71_A Histone lysine methyltr 97.7 0.0002 6.9E-09 78.6 12.9 115 618-750 318-450 (490)
200 1na3_A Designed protein CTPR2; 97.6 0.00017 5.9E-09 58.5 8.6 81 609-689 9-91 (91)
201 3qwp_A SET and MYND domain-con 97.6 0.0002 7E-09 77.3 10.3 113 619-749 297-427 (429)
202 1zu2_A Mitochondrial import re 97.6 4.8E-05 1.6E-09 68.4 4.4 103 549-677 13-127 (158)
203 1dce_A Protein (RAB geranylger 97.5 0.00057 2E-08 76.9 13.5 148 551-703 42-220 (567)
204 3lvg_A Clathrin heavy chain 1; 97.4 0.00097 3.3E-08 69.9 12.0 394 63-493 53-533 (624)
205 3bee_A Putative YFRE protein; 97.4 0.0006 2E-08 55.7 8.6 67 639-705 4-73 (93)
206 3qww_A SET and MYND domain-con 97.4 0.00024 8.2E-09 76.6 7.7 83 642-742 341-431 (433)
207 2l6j_A TPR repeat-containing p 97.3 0.00049 1.7E-08 58.2 7.4 65 640-704 3-67 (111)
208 3ly7_A Transcriptional activat 97.3 0.0026 8.9E-08 65.6 13.8 47 535-583 191-243 (372)
209 1klx_A Cysteine rich protein B 97.3 0.0015 5.2E-08 58.1 10.5 64 640-705 56-127 (138)
210 1na3_A Designed protein CTPR2; 97.2 0.0015 5.3E-08 52.6 9.5 64 641-704 9-72 (91)
211 2kat_A Uncharacterized protein 97.1 0.00075 2.6E-08 57.7 6.7 80 592-674 4-86 (115)
212 1klx_A Cysteine rich protein B 96.9 0.011 3.7E-07 52.5 12.8 110 450-567 8-126 (138)
213 3qww_A SET and MYND domain-con 96.9 0.0033 1.1E-07 67.7 10.7 69 610-678 341-424 (433)
214 1pc2_A Mitochondria fission pr 96.9 0.0046 1.6E-07 54.8 9.5 66 639-704 30-100 (152)
215 3ma5_A Tetratricopeptide repea 96.9 0.0027 9.2E-08 52.7 7.8 63 537-601 6-69 (100)
216 3qwp_A SET and MYND domain-con 96.8 0.0061 2.1E-07 65.7 11.6 70 611-680 331-415 (429)
217 2kc7_A BFR218_protein; tetratr 96.8 0.003 1E-07 52.0 7.3 64 615-678 6-72 (99)
218 3ly7_A Transcriptional activat 96.7 0.0083 2.8E-07 61.9 11.6 133 569-705 190-340 (372)
219 2kc7_A BFR218_protein; tetratr 96.7 0.0065 2.2E-07 49.9 8.6 86 579-675 6-95 (99)
220 3lvg_A Clathrin heavy chain 1; 96.1 5.6E-05 1.9E-09 79.0 -8.7 259 305-597 54-315 (624)
221 3u64_A Protein TP_0956; tetrat 96.1 0.013 4.6E-07 57.8 8.0 87 625-711 179-276 (301)
222 1wy6_A Hypothetical protein ST 95.8 0.51 1.8E-05 40.1 15.2 139 550-707 19-157 (172)
223 3bee_A Putative YFRE protein; 95.5 0.051 1.8E-06 44.0 8.3 68 607-674 4-76 (93)
224 2v5f_A Prolyl 4-hydroxylase su 95.5 0.05 1.7E-06 45.2 8.2 69 613-681 9-86 (104)
225 3mkq_B Coatomer subunit alpha; 95.4 0.28 9.5E-06 44.6 13.4 129 515-667 13-141 (177)
226 3mkq_A Coatomer beta'-subunit; 95.3 0.44 1.5E-05 56.1 19.0 104 515-636 660-763 (814)
227 1pc2_A Mitochondria fission pr 95.1 0.04 1.4E-06 48.8 6.7 73 608-680 31-110 (152)
228 3mkq_A Coatomer beta'-subunit; 94.9 0.38 1.3E-05 56.7 16.9 103 283-402 661-763 (814)
229 1nzn_A CGI-135 protein, fissio 94.8 0.13 4.3E-06 43.8 8.7 65 639-703 33-102 (126)
230 3u64_A Protein TP_0956; tetrat 94.8 0.054 1.9E-06 53.5 7.2 111 520-635 134-266 (301)
231 1y8m_A FIS1; mitochondria, unk 94.6 0.51 1.8E-05 40.8 12.0 67 638-704 36-106 (144)
232 3mkq_B Coatomer subunit alpha; 94.1 2.1 7.3E-05 38.8 15.7 105 282-403 13-117 (177)
233 4gns_B Protein CSD3, chitin bi 94.0 0.19 6.4E-06 57.4 10.4 55 648-702 344-398 (754)
234 2v5f_A Prolyl 4-hydroxylase su 93.6 0.49 1.7E-05 39.0 9.9 65 640-704 4-75 (104)
235 1nzn_A CGI-135 protein, fissio 91.7 0.88 3E-05 38.6 8.9 38 643-680 76-113 (126)
236 3o48_A Mitochondria fission 1 91.5 0.72 2.5E-05 39.3 8.0 65 639-703 38-106 (134)
237 1qsa_A Protein (soluble lytic 91.0 23 0.00079 39.5 23.4 288 361-681 57-355 (618)
238 4h7y_A Dual specificity protei 89.8 1.2 4E-05 39.0 7.8 107 535-675 10-128 (161)
239 1wy6_A Hypothetical protein ST 87.5 13 0.00043 31.8 12.9 82 518-601 72-153 (172)
240 4h7y_A Dual specificity protei 87.3 1.2 4E-05 38.9 6.3 53 654-706 73-125 (161)
241 4ady_A RPN2, 26S proteasome re 86.1 58 0.002 38.0 28.6 154 483-644 501-664 (963)
242 3lpz_A GET4 (YOR164C homolog); 83.4 40 0.0014 34.0 19.3 134 276-420 37-181 (336)
243 3lpz_A GET4 (YOR164C homolog); 82.5 44 0.0015 33.7 19.6 126 461-601 83-215 (336)
244 4gns_B Protein CSD3, chitin bi 81.3 6.3 0.00022 44.9 10.8 50 548-599 347-397 (754)
245 1y8m_A FIS1; mitochondria, unk 81.2 13 0.00044 32.1 10.1 72 607-678 37-114 (144)
246 3o48_A Mitochondria fission 1 80.6 7.1 0.00024 33.3 8.2 72 607-678 38-115 (134)
247 3txn_A 26S proteasome regulato 80.2 33 0.0011 35.7 15.0 157 511-668 23-208 (394)
248 3ffl_A Anaphase-promoting comp 79.6 11 0.00037 33.6 9.4 124 567-702 12-149 (167)
249 2p58_C Putative type III secre 78.8 14 0.0005 29.4 8.6 78 254-335 22-99 (116)
250 2wpv_A GET4, UPF0363 protein Y 78.1 59 0.002 32.5 19.3 127 460-601 80-216 (312)
251 3ffl_A Anaphase-promoting comp 77.4 12 0.0004 33.4 8.9 26 576-601 66-91 (167)
252 1v54_E Cytochrome C oxidase po 77.4 17 0.00059 29.1 8.8 63 632-706 36-98 (109)
253 1wdy_A 2-5A-dependent ribonucl 76.9 52 0.0018 31.8 15.4 207 68-298 6-240 (285)
254 2wpv_A GET4, UPF0363 protein Y 76.6 65 0.0022 32.2 19.2 133 276-419 35-178 (312)
255 2ff4_A Probable regulatory pro 76.5 4.6 0.00016 42.4 7.4 60 644-703 174-233 (388)
256 2uwj_G Type III export protein 76.3 14 0.00048 29.4 7.9 78 254-335 21-98 (115)
257 2qx5_A Nucleoporin NIC96; mRNA 74.8 58 0.002 36.4 15.9 82 443-535 300-384 (661)
258 4b4t_P 26S proteasome regulato 73.8 78 0.0027 33.6 16.3 186 450-635 29-244 (445)
259 4ady_A RPN2, 26S proteasome re 73.6 1.4E+02 0.0049 34.8 27.0 254 314-573 383-661 (963)
260 2uwj_G Type III export protein 72.3 26 0.00088 27.9 8.5 80 151-234 19-98 (115)
261 2p58_C Putative type III secre 70.5 26 0.0009 27.9 8.2 80 151-234 20-99 (116)
262 3mv2_A Coatomer subunit alpha; 69.8 35 0.0012 34.0 11.2 60 631-704 195-256 (325)
263 4fhn_B Nucleoporin NUP120; pro 69.4 55 0.0019 39.8 15.5 60 644-703 902-966 (1139)
264 1zbp_A Hypothetical protein VP 68.2 43 0.0015 32.5 11.2 51 549-601 8-59 (273)
265 2ff4_A Probable regulatory pro 67.7 21 0.00072 37.3 10.0 67 542-610 175-246 (388)
266 2qx5_A Nucleoporin NIC96; mRNA 67.5 1.2E+02 0.0041 34.0 16.3 22 619-640 548-569 (661)
267 1v54_E Cytochrome C oxidase po 66.6 26 0.0009 28.1 7.6 62 554-617 26-87 (109)
268 2y69_E Cytochrome C oxidase su 64.9 41 0.0014 28.6 8.8 66 629-706 76-141 (152)
269 3eiq_C Programmed cell death p 64.9 52 0.0018 33.6 11.8 64 510-573 220-288 (358)
270 4fhn_B Nucleoporin NUP120; pro 64.9 73 0.0025 38.7 15.4 142 478-627 818-989 (1139)
271 3ltm_A Alpha-REP4; protein eng 62.6 94 0.0032 28.5 14.5 48 272-319 31-78 (211)
272 1n11_A Ankyrin; clathrin, BAND 61.7 1.2E+02 0.0041 31.7 15.0 112 179-299 17-135 (437)
273 1zbp_A Hypothetical protein VP 58.7 16 0.00056 35.4 6.3 57 618-674 6-64 (273)
274 4g8k_A 2-5A-dependent ribonucl 58.2 1.1E+02 0.0039 30.5 13.5 106 258-375 218-329 (337)
275 3kea_A K1L; tropism, ANK repea 57.8 1.1E+02 0.0037 29.9 12.8 116 67-200 31-153 (285)
276 3esl_A Checkpoint serine/threo 56.8 67 0.0023 29.6 9.7 105 626-756 61-171 (202)
277 1k1a_A B-cell lymphoma 3-encod 55.3 74 0.0025 29.8 10.9 24 114-137 17-40 (241)
278 4b4t_R RPN7, 26S proteasome re 53.1 53 0.0018 34.7 10.0 58 611-668 133-195 (429)
279 4b4t_P 26S proteasome regulato 52.6 2.3E+02 0.0079 29.9 21.4 56 510-565 140-204 (445)
280 2y69_E Cytochrome C oxidase su 51.8 66 0.0023 27.4 7.9 60 556-617 71-130 (152)
281 1wdy_A 2-5A-dependent ribonucl 51.8 1.7E+02 0.0057 28.0 15.0 46 354-399 193-240 (285)
282 3hra_A Ankyrin repeat family p 51.1 98 0.0034 27.9 10.7 155 72-239 10-173 (201)
283 4b4t_R RPN7, 26S proteasome re 49.6 49 0.0017 35.0 9.1 95 509-603 133-238 (429)
284 3txn_A 26S proteasome regulato 49.2 2.4E+02 0.0083 29.1 22.6 282 378-705 22-344 (394)
285 3hra_A Ankyrin repeat family p 45.5 1.1E+02 0.0038 27.5 10.1 58 283-340 112-173 (201)
286 1k1a_A B-cell lymphoma 3-encod 43.4 1.6E+02 0.0053 27.4 11.1 20 69-91 11-30 (241)
287 3jxi_A Vanilloid receptor-rela 43.4 51 0.0017 31.6 7.5 51 114-164 13-72 (260)
288 3jxi_A Vanilloid receptor-rela 42.3 57 0.002 31.2 7.8 51 215-265 13-72 (260)
289 4a1g_A Mitotic checkpoint seri 41.4 1.4E+02 0.0049 26.0 9.0 75 626-706 52-132 (152)
290 1n11_A Ankyrin; clathrin, BAND 40.9 3.3E+02 0.011 28.2 16.6 144 145-301 18-170 (437)
291 3ltj_A Alpharep-4; protein eng 40.4 2.1E+02 0.007 25.8 19.0 153 171-332 26-178 (201)
292 3eu9_A Huntingtin-interacting 40.0 1.4E+02 0.0047 27.7 10.0 22 179-200 45-66 (240)
293 2nsz_A Programmed cell death p 39.0 1.3E+02 0.0044 25.4 8.3 64 510-573 10-78 (129)
294 3esl_A Checkpoint serine/threo 38.5 2.4E+02 0.0081 25.9 10.6 66 540-607 82-148 (202)
295 1qsa_A Protein (soluble lytic 38.3 4.5E+02 0.015 29.1 32.4 351 49-434 56-441 (618)
296 2l0z_A Glycoprotein G2; zinc-b 37.8 10 0.00036 24.1 0.8 18 826-843 11-29 (42)
297 3b7b_A Euchromatic histone-lys 37.6 1.3E+02 0.0045 27.9 9.4 18 181-198 82-99 (237)
298 2wvi_A Mitotic checkpoint seri 35.8 1.7E+02 0.0059 25.9 8.7 76 625-706 46-127 (164)
299 3eu9_A Huntingtin-interacting 35.8 1.2E+02 0.0042 28.0 8.9 18 181-198 114-131 (240)
300 3mkr_B Coatomer subunit alpha; 35.8 87 0.003 31.2 7.5 61 631-705 186-248 (320)
301 2r9g_A AAA ATPase, central reg 34.7 2E+02 0.0069 26.3 9.0 45 543-588 16-63 (204)
302 2nsz_A Programmed cell death p 34.2 1E+02 0.0035 26.0 6.9 61 176-236 10-75 (129)
303 3kea_A K1L; tropism, ANK repea 32.5 2E+02 0.0067 27.9 10.0 59 614-673 131-190 (285)
304 2rfa_A Transient receptor pote 30.0 3.2E+02 0.011 25.0 10.9 19 70-91 6-24 (232)
305 3i5p_A Nucleoporin NUP170; hel 29.9 3.2E+02 0.011 29.5 11.4 66 639-704 176-246 (525)
306 2pnn_A Transient receptor pote 29.6 1.9E+02 0.0066 27.6 9.3 97 102-200 10-125 (273)
307 2ion_A PDCD4, programmed cell 29.4 1.3E+02 0.0046 26.2 7.0 64 510-573 12-80 (152)
308 2zu6_B Programmed cell death p 29.3 4.3E+02 0.015 26.1 13.3 63 511-573 170-237 (307)
309 3b7b_A Euchromatic histone-lys 29.1 3.4E+02 0.012 24.9 11.7 14 226-239 26-39 (237)
310 2hgo_A CASSIICOLIN; toxin, dis 28.3 12 0.00041 20.6 -0.0 13 832-844 8-22 (27)
311 3ljn_A Hypothetical protein; a 28.1 3.5E+02 0.012 27.1 11.4 16 385-400 27-42 (364)
312 1oyz_A Hypothetical protein YI 27.8 4E+02 0.014 25.3 18.1 246 396-653 27-279 (280)
313 3bqo_A Telomeric repeat-bindin 27.4 2.5E+02 0.0086 25.6 8.2 58 625-682 94-158 (211)
314 2ion_A PDCD4, programmed cell 26.7 95 0.0033 27.1 5.5 61 176-236 12-77 (152)
315 4b4t_S RPN3, 26S proteasome re 26.5 1.1E+02 0.0038 32.9 6.9 62 574-635 232-296 (523)
316 3d9h_A CDNA FLJ77766, highly s 26.1 2E+02 0.0069 27.8 8.7 20 176-195 15-34 (285)
317 2rfa_A Transient receptor pote 25.8 3.8E+02 0.013 24.4 11.7 14 386-399 205-218 (232)
318 3ltj_A Alpharep-4; protein eng 25.5 3.6E+02 0.012 24.0 16.8 17 374-390 120-136 (201)
319 3bge_A Predicted ATPase; struc 25.0 2.2E+02 0.0074 26.0 7.5 45 544-588 10-57 (201)
320 3ljn_A Hypothetical protein; a 24.6 5.3E+02 0.018 25.6 14.4 17 415-431 179-195 (364)
321 3twe_A Alpha4H; unknown functi 24.5 78 0.0027 17.3 2.7 18 733-750 2-19 (27)
322 2d2s_A Exocyst complex compone 24.4 2.7E+02 0.0091 26.4 8.6 22 211-232 25-46 (235)
323 3d9h_A CDNA FLJ77766, highly s 24.2 2.6E+02 0.0087 27.0 9.1 15 65-79 13-27 (285)
324 4b4t_S RPN3, 26S proteasome re 24.0 3E+02 0.01 29.6 9.6 67 609-675 231-304 (523)
325 3ctd_A Putative ATPase, AAA fa 23.0 3.1E+02 0.011 25.2 8.2 48 541-588 35-85 (213)
326 3ltm_A Alpha-REP4; protein eng 22.0 4.3E+02 0.015 23.7 19.0 91 238-333 94-184 (211)
327 4aez_C MAD3, mitotic spindle c 21.8 1E+02 0.0035 28.9 4.9 74 626-705 101-180 (223)
328 2pk8_A Uncharacterized protein 21.8 54 0.0018 25.5 2.4 46 732-785 13-58 (103)
329 3aji_A 26S proteasome non-ATPa 21.7 2.4E+02 0.0083 25.8 8.1 181 107-299 7-194 (231)
330 1qc6_A EVH1 domain from ENA/VA 21.4 29 0.00099 29.5 1.0 40 792-839 44-87 (130)
331 2lo3_A SAGA-associated factor 20.9 23 0.00079 22.8 0.2 12 800-811 16-27 (44)
332 2k0q_A Putative uncharacterize 20.8 32 0.0011 25.1 1.0 22 820-841 8-29 (74)
333 1bd8_A P19INK4D CDK4/6 inhibit 20.8 1.8E+02 0.0062 24.7 6.4 15 285-299 109-123 (156)
334 1ya0_A SMG-7 transcript varian 20.7 2E+02 0.0067 31.0 7.6 41 655-695 166-206 (497)
335 4a1g_A Mitotic checkpoint seri 20.1 4.3E+02 0.015 22.9 9.8 52 555-607 82-134 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-42 Score=399.09 Aligned_cols=527 Identities=9% Similarity=-0.008 Sum_probs=367.0
Q ss_pred ccChhhhhhHHHHHHhhcCCCCcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchH
Q 003148 42 CKTLNELKQPHCHILKQGLGHKPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVE 121 (844)
Q Consensus 42 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 121 (844)
|..+....++|......++...+. ......+.++|. +..++..|+ .++.+++..|+.++..|.+.|++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~ 102 (597)
T 2xpi_A 33 PPSMGALNANNSNSQLSTLTISPM--TYLANNTSTDGS---FLKERNAQN-----TDSLSREDYLRLWRHDALMQQQYKC 102 (597)
T ss_dssp ------------CTTSCGGGGCGG--GGGC-----------------------------CHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHhhccccccccceeechh--hhhcccccccCc---cCCCCCccc-----cchHHHHHHHHHHHHHHHHccCchH
Confidence 334444445555444333322222 222334667777 888899999 8888899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC-
Q 003148 122 AISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS- 200 (844)
Q Consensus 122 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~- 200 (844)
|+.+|++|.. ..||..++..+..+|.+.|++++|..+++.+... ++++.+++.++.+|.++|++++|.++|+++.
T Consensus 103 A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 178 (597)
T 2xpi_A 103 AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP 178 (597)
T ss_dssp HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 9999999985 5678899999999999999999999999988644 6889999999999999999999999999543
Q ss_pred CC------------------CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch-HHHHHHHHHhcCCc--hHHH
Q 003148 201 ER------------------NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVT-MVCVISACAKLQNL--ELGD 259 (844)
Q Consensus 201 ~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~--~~a~ 259 (844)
.. +..+|+.++.+|.+.|++++|+++|++|.+.+ |+..+ +..+...+...+.. +.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp TC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHH
Confidence 33 47899999999999999999999999999864 44333 33333222221111 1111
Q ss_pred HH-HHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 003148 260 RV-CAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGP 336 (844)
Q Consensus 260 ~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 336 (844)
.+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc
Confidence 11 44444445555667788889999999999999999999987 7888999999999999999999999998886542
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHH
Q 003148 337 RPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGL 416 (844)
Q Consensus 337 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 416 (844)
. +..+ ++.++..|.+.|++++|..+|+.+.+.+
T Consensus 337 ~-~~~~-----------------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------- 369 (597)
T 2xpi_A 337 Y-NLDV-----------------------------------YPLHLASLHESGEKNKLYLISNDLVDRH----------- 369 (597)
T ss_dssp T-CCTT-----------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------
T ss_pred c-cHHH-----------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhC-----------
Confidence 1 2222 3455555566666666666655543200
Q ss_pred HhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHH
Q 003148 417 IKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYA 496 (844)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 496 (844)
..+..+|+.++..|.+.|++++|+++|+++.+. .
T Consensus 370 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------------------------- 403 (597)
T 2xpi_A 370 -----------------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--D--------------------------- 403 (597)
T ss_dssp -----------------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---------------------------
T ss_pred -----------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C---------------------------
Confidence 034556666666666666666666666666542 1
Q ss_pred HHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 003148 497 YIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP-D 572 (844)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 572 (844)
+.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+ ..| +
T Consensus 404 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 474 (597)
T 2xpi_A 404 -------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYD 474 (597)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCC
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 2245566777777888888888888887665 34667888888888888888888888888877 344 4
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCC--cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHH
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQ--IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWG 645 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~ 645 (844)
..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 5678888888888888888888888887632 55676 568888888888888888888888877 3344 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 646 SLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 646 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
.+..+|...|+.++|...++++++++|+++..+..|+++|.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 88888888888888888888888888888888888887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-40 Score=386.49 Aligned_cols=479 Identities=11% Similarity=0.007 Sum_probs=368.8
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVC 262 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 262 (844)
+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|+++.|.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 56678888899999999999999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------------CceehHHHHHHHHHcCChHH
Q 003148 263 AYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDR-------------------NLVLCNTIMSNYVRLGLARE 323 (844)
Q Consensus 263 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~ 323 (844)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678999999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHH-HhhcCChh--hHHHH-HHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHh
Q 003148 324 ALAILDEMLLHGPRPDRVTMLSAVSA-SAQLGDLL--CGRMC-HGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFD 399 (844)
Q Consensus 324 A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 399 (844)
|+++|++|.+.+ |+..+....+.. +...+..+ ....+ +..+...+......+++.++.+|.++|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999864 444433333322 22221111 11111 3344444455556667777888888888888888888
Q ss_pred hcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHh
Q 003148 400 HMSN--KTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVG 477 (844)
Q Consensus 400 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 477 (844)
++.+ ++..+|+.+ +.+|.+.|++++|+++|++|.+.+ ..+..++..
T Consensus 297 ~~~~~~~~~~~~~~l-------------------------------~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 344 (597)
T 2xpi_A 297 SINGLEKSSDLLLCK-------------------------------ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL 344 (597)
T ss_dssp TSTTGGGCHHHHHHH-------------------------------HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH
T ss_pred HhhcCCchHHHHHHH-------------------------------HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH
Confidence 8776 444444444 445555555555555555555432 124455555
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 554 (844)
++.++...|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 5556666666666666666555443 4467888999999999999999999999875 45788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
++|+++|+++.+ ..| +..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+
T Consensus 424 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 424 DQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp HHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998 455 56899999999999999999999999998832 2347889999999999999999999999
Q ss_pred hC-------CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 634 SM-------PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 634 ~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++ +..|+ ..+|..++.+|.+.|++++|+..++++++++|+++.+|..++++|.+.|+|++|.+.++++.+.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 88 45787 6799999999999999999999999999999999999999999999999999999999999875
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.3e-27 Score=262.66 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=172.5
Q ss_pred HHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC---------hHH
Q 003148 86 AQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSA---------FGE 156 (844)
Q Consensus 86 A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~ 156 (844)
+..++..+.+......+...++.+|.+|++.|++++|+++|++|.+.|++||.+||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444433332333333446888999999999999999999999999999999999999999987654 678
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 003148 157 GVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMS----ERNVVSWTSLICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 157 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 232 (844)
|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986 48999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 003148 233 EGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKC 287 (844)
Q Consensus 233 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 287 (844)
.|+.||..||+++|.+|++.|++++|.++++.|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999888764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=3.1e-27 Score=262.95 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 003148 120 VEAISLYVELAGFGILPDK-FTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDE 198 (844)
Q Consensus 120 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 198 (844)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455566777777766544 458888999999999999999999999999999999999999998887764332
Q ss_pred cCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHH
Q 003148 199 MSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVN 278 (844)
Q Consensus 199 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 278 (844)
.+.+..++|+++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q 003148 279 ALVDMYMKCGAVDTAKQLFGECKD----RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLG 354 (844)
Q Consensus 279 ~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 354 (844)
+||.+|++.|++++|.++|++|.+ ||.++|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..++..+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999888888888888888888853 6777888888888888888888888888888888888888888888776543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4e-24 Score=233.53 Aligned_cols=367 Identities=13% Similarity=0.116 Sum_probs=261.7
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHH
Q 003148 314 NYVRLGLAREALAILDEMLLHGPRPDRV-TMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQE 392 (844)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 392 (844)
.+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+.+.+...+...++.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 344455555555555555443 23332 22223333444555555555555544432 234555666777777777777
Q ss_pred HHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccccccccccccccCChHHHHHHHHHHHhC
Q 003148 393 MACRIFDHMSN--K-TVVSWNSLIAGLIKNGDVESAREVFSEMPG--R-DHISWNTMLGGLTQENMFEEAMELFRVMLSE 466 (844)
Q Consensus 393 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 466 (844)
+|...|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ | +...|..+...+...|++++|++.|+++...
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777776643 3 334566677777777777777777666543 2 3445666667777778888888888877764
Q ss_pred Cccc-ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHH
Q 003148 467 RIKV-DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWT 542 (844)
Q Consensus 467 g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~ 542 (844)
.| +..++..+...+...|+++.|...+..+.+.. +.+...+..+...|...|++++|...|++.. ..+...|.
T Consensus 165 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 34 34566777777777888888888887777765 3356677788888888899999988888665 34577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR 621 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 621 (844)
.+...|...|++++|++.|+++++ ..|+. .++..+..++...|++++|...|+++.+. .+.+...+..++.+|.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 888899999999999999999888 56764 67888888888999999999999988872 23346788888899999
Q ss_pred cCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 622 AGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 622 ~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++++|+++..|..++.+|...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999887 55554 66888888888899999999999999999999988888888888877663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.6e-23 Score=228.72 Aligned_cols=348 Identities=15% Similarity=0.142 Sum_probs=304.2
Q ss_pred HHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHH
Q 003148 348 SASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVES 424 (844)
Q Consensus 348 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 424 (844)
..+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.... .+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 45567899999999998888764 33456677888899999999999999987654 466789999999999999999
Q ss_pred HHHHHhhCCC--C-CccccccccccccccCChHHHHHHHHHHHhCCcccChh-hHHhHHHHccccCchHHHHHHHHHHHH
Q 003148 425 AREVFSEMPG--R-DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRV-TMVGVASACGYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 425 A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~ 500 (844)
|.+.|+++.. | +..+|..+...|.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998754 3 4557999999999999999999999999874 56654 455566677888999999999999988
Q ss_pred hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHH
Q 003148 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVF 576 (844)
Q Consensus 501 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 576 (844)
.. +.+...++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++..+ ..|+. .++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 75 3467788999999999999999999999886 34577899999999999999999999999998 67865 788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
..+..++...|++++|.+.|+++.+ ..|+ ...|..++.+|.+.|++++|.+.++++ ...| +..+|..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999988 5565 678999999999999999999999998 3334 67899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998863
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-21 Score=220.53 Aligned_cols=444 Identities=11% Similarity=-0.038 Sum_probs=226.8
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 003148 206 SWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYM 285 (844)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 285 (844)
.|......+.+.|++++|+..|+++.... ||..++..+..++...|+++.|.+.+..+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35555666777777777777777777654 567777777777777777777777777777664 335567777777777
Q ss_pred hcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHH
Q 003148 286 KCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMC 362 (844)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 362 (844)
+.|++++|...|+++... +......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 777777777777766432 33334444444444333333333333332222222222111100000000000000000
Q ss_pred HHHHHHhCC---------CchhhHHHHHHHHHHH---cCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 003148 363 HGYVLRNGL---------EGWDSICNTMIDMYMK---CGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFS 430 (844)
Q Consensus 363 ~~~~~~~g~---------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (844)
...+..... +.+...+..+...+.. .|++++|...|+++.+ .++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------~~~ 220 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR------------------------LFE 220 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH------------------------HHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH------------------------Hhh
Confidence 000000000 1112222222222222 4555555555544322 000
Q ss_pred hCC----------CCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHH
Q 003148 431 EMP----------GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 431 ~m~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 500 (844)
... ..+...|..+...|...|++++|+..|+++.... |+...+..+..++...|+++.|...+..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 000 0123355556666666777777777777766532 3344444455555555555555555555544
Q ss_pred hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHH
Q 003148 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVF 576 (844)
Q Consensus 501 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 576 (844)
.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ..++
T Consensus 299 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 375 (514)
T 2gw1_A 299 LD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVP 375 (514)
T ss_dssp TC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHH
T ss_pred cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHH
Confidence 33 2234455556666666666666666666543 23445566666666666666666666666665 3343 2455
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-ChHHHHHH
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGR---AGLLGEALDLIKSM-PVEP-NDVIWGSL 647 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~m-~~~p-~~~~~~~l 647 (844)
..+...+...|++++|..+++++.+...-.++ ...+..++..|.+ .|++++|.+.++++ ...| +..+|..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 55666666666666666666666552211111 2255566666666 66666666666655 2233 34455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
...+...|+.++|...++++++++|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 6666666666666666666666666655444433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.9e-21 Score=218.08 Aligned_cols=422 Identities=12% Similarity=0.035 Sum_probs=298.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 003148 274 ALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 274 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
...+..+...|.+.|++++|...|+++.+ |+..+|..+..+|.+.|++++|++.|+++.+... .+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34566667777788888888888877653 5667777777888888888888888887776531 23345666666677
Q ss_pred hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC----CCcchHHHH---HHHHHhcCCHHH
Q 003148 352 QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN----KTVVSWNSL---IAGLIKNGDVES 424 (844)
Q Consensus 352 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~l---i~~~~~~g~~~~ 424 (844)
..|+++.|...+..+.+.+.. +......++..+.+......+.+.+..+.. ++...+..- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777776665532 222223334433333333333333322111 000000000 000001111111
Q ss_pred HHHHHhhCCC---------C-Ccccccccccccc---ccCChHHHHHHHHHHHh-----CCccc--------ChhhHHhH
Q 003148 425 AREVFSEMPG---------R-DHISWNTMLGGLT---QENMFEEAMELFRVMLS-----ERIKV--------DRVTMVGV 478 (844)
Q Consensus 425 A~~~~~~m~~---------~-~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~l 478 (844)
....+..... + +...|......+. +.|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112221111 0 1222222333233 48999999999999987 32222 23466677
Q ss_pred HHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 003148 479 ASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE 555 (844)
Q Consensus 479 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 555 (844)
...+...|+++.|...+..+.+.... ...+..+...|.+.|++++|...|+++. ..+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 77888999999999999999888654 8888899999999999999999999876 346778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIK 633 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~ 633 (844)
+|+..|+++.+ ..|+. .++..+...+...|++++|..+++.+.+ ..| +...+..+...|.+.|++++|.+.++
T Consensus 322 ~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKR---KFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998 55654 7888899999999999999999999988 334 36788899999999999999999999
Q ss_pred hC----CCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 634 SM----PVEPN----DVIWGSLLAACQK---HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 634 ~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
++ +-.|+ ..+|..+...+.. .|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87 22222 3489999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hC
Q 003148 703 EQ 704 (844)
Q Consensus 703 ~~ 704 (844)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2.5e-21 Score=215.80 Aligned_cols=320 Identities=14% Similarity=0.107 Sum_probs=259.2
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccccccccc
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGG 446 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 446 (844)
.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3556677777888888888888888877653 3566777888888888888888888877654 346677788888
Q ss_pred ccccCChHHHHHHHHHHHhCCcccCh----hhHHhH------------HHHccccCchHHHHHHHHHHHHhCCCCchhHH
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDR----VTMVGV------------ASACGYLGALDLAKWIYAYIEKNGIHCDMQLA 510 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 510 (844)
|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 88888888888888888764 3443 333333 334677899999999999988765 4477888
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH-HHHH-------
Q 003148 511 TALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV-FVGV------- 579 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------- 579 (844)
..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+... +..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999886 45789999999999999999999999999998 6787654 3333
Q ss_pred -----HHHHhccCcHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHH
Q 003148 580 -----LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSL 647 (844)
Q Consensus 580 -----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~l 647 (844)
..+|.+.|++++|..+|+++.+ +.|+ ..+|..++.+|.+.|++++|++.++++ ...| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 6789999999999999999988 4455 457899999999999999999999997 5555 57899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHHcC-----CchHHHHHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS------------NIYASAG-----KWTNVARVRLQ 700 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 700 (844)
..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 5566666 44455555554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.7e-20 Score=211.43 Aligned_cols=431 Identities=11% Similarity=0.035 Sum_probs=279.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 003148 205 VSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMY 284 (844)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 284 (844)
..|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|+++.|.+.+..+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456777788888888888888888888753 2355667777777788888888888888887765 34567777788888
Q ss_pred HhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 003148 285 MKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHG 364 (844)
Q Consensus 285 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 364 (844)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++.... |+...
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~---------------------- 158 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRGS---------------------- 158 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccccc----------------------
Confidence 88888888888886442 222233333445555666677777777775431 10000
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcc---hHHHHHHHHHhc-CCHHHHHHHHhhCCCCCcccc
Q 003148 365 YVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVV---SWNSLIAGLIKN-GDVESAREVFSEMPGRDHISW 440 (844)
Q Consensus 365 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 440 (844)
...|+ ...+..|....+.+.+...+......+.. .+..+...+... +++
T Consensus 159 -----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------ 211 (537)
T 3fp2_A 159 -----QVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY------------------ 211 (537)
T ss_dssp -----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH------------------
T ss_pred -----cccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh------------------
Confidence 00011 22333344555666666655555543322 222222221111 000
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccCh--------hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhH
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDR--------VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATA 512 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (844)
....|++++|+.+|+++.+. .|+. .++..+...+...|+++.|...+..+.+.. |+...+..
T Consensus 212 ------~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 281 (537)
T 3fp2_A 212 ------LVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIF 281 (537)
T ss_dssp ------HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHH
Confidence 01123556666666666553 2331 123344445556677777777777776654 33566677
Q ss_pred HhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 513 LVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++++ ..|+. ..+..+...+...|+
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 7777888888888888887665 34567788888888888888888888888887 45654 677778888888888
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC----CCCC----ChHHHHHHHHHHHhc-----
Q 003148 589 VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEP----NDVIWGSLLAACQKH----- 654 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p----~~~~~~~ll~~~~~~----- 654 (844)
+++|..+++++.+ ..|+ ...+..+...|.+.|++++|.+.++++ +..+ ....+..+...+...
T Consensus 360 ~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 360 FTESEAFFNETKL---KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp HHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 8888888888877 2344 567778888888888888888888876 1111 122344445566666
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 655 -----QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 655 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88899999999999999988888889999999999999999998888764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.6e-19 Score=201.17 Aligned_cols=360 Identities=12% Similarity=0.051 Sum_probs=251.0
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003148 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVS 348 (844)
Q Consensus 272 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 348 (844)
.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|++.|+++.+.+ |+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------- 92 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD--------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---------
Confidence 4566777777777788888888877776643 355677777777777777777777777776643 22
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-Cc---chHHHHHHHHHhcCCH
Q 003148 349 ASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-TV---VSWNSLIAGLIKNGDV 422 (844)
Q Consensus 349 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~---~~~~~li~~~~~~g~~ 422 (844)
+..++..+...|.+.|++++|...|+++.+ | +. ..|..++..+...+.+
T Consensus 93 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 93 -------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHH
Confidence 234456777788888888888888888765 2 22 4555555543332222
Q ss_pred HHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhC
Q 003148 423 ESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNG 502 (844)
Q Consensus 423 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 502 (844)
.. ...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...+..+.+..
T Consensus 148 ~~-------------------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 148 SQ-------------------ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HH-------------------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HH-------------------HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22 223445677777777777776532 2244556666667777777777777777776653
Q ss_pred CCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHH------------HHHHHhcCChHHHHHHHHHHHHC
Q 003148 503 IHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAA------------IGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 503 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+.+..++..+...|.+.|++++|...|+++. ..+...|..+ ...|.+.|++++|+..|+++++
T Consensus 208 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~- 285 (450)
T 2y4t_A 208 -NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK- 285 (450)
T ss_dssp -CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 3456777888888888888888888888775 2344455544 7888999999999999999998
Q ss_pred CCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 003148 568 GIKPDS-----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN 640 (844)
Q Consensus 568 g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~ 640 (844)
+.|+. ..+..+..++.+.|++++|..+++.+.+ +.| +...|..+..+|...|++++|.+.++++ ...|+
T Consensus 286 -~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 286 -TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp -HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred -cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 56763 3677788889999999999999999887 345 4778889999999999999999999988 66775
Q ss_pred -hHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHHcCCc
Q 003148 641 -DVIWGSLLAA------------CQKHQ-----NVDIAAYAAER-ITELDPEKSG----------VHVLLSNIYASAGKW 691 (844)
Q Consensus 641 -~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~ 691 (844)
..+|..+..+ |...| +.+++.+.+++ +++.+|++.. .+..++.+|...|+.
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 4566666532 33334 66778888886 7888887532 344555666666555
Q ss_pred hH
Q 003148 692 TN 693 (844)
Q Consensus 692 ~~ 693 (844)
++
T Consensus 442 ~~ 443 (450)
T 2y4t_A 442 EM 443 (450)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=7.5e-19 Score=200.58 Aligned_cols=444 Identities=11% Similarity=0.001 Sum_probs=270.1
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003148 103 LFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINF 182 (844)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 182 (844)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...+..+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887753 2345567777777777888888888888877775 4566677777777
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 003148 183 YGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVC 262 (844)
Q Consensus 183 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 262 (844)
|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++.... |+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~----------------------- 156 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR----------------------- 156 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc-----------------------
Confidence 777777777777776442 122222222334444444556666666654321 000
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCce---ehHHHHHHHHH--------cCChHHHHHHHHHH
Q 003148 263 AYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLV---LCNTIMSNYVR--------LGLAREALAILDEM 331 (844)
Q Consensus 263 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~l~~~m 331 (844)
.....|+ ...+..|....+.+.+...+....+.+.. .+..+...+.. .|++++|+.+|+++
T Consensus 157 ----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 157 ----GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0000111 11222233344444444444444332222 12222211111 13455555555555
Q ss_pred HhcCCCCChhh-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHH
Q 003148 332 LLHGPRPDRVT-MLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWN 410 (844)
Q Consensus 332 ~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 410 (844)
.+. .|+... +..+ ..++..+...|...|
T Consensus 229 l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~--------------------- 257 (537)
T 3fp2_A 229 LSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKN--------------------- 257 (537)
T ss_dssp HC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTT---------------------
T ss_pred HHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcc---------------------
Confidence 543 222111 0000 011222333333344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHH
Q 003148 411 SLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDL 490 (844)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 490 (844)
++++|+..|+++... .|+...+..+...+...|+++.
T Consensus 258 -----------------------------------------~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 258 -----------------------------------------NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred -----------------------------------------cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 444444444444432 2334444444555555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 491 AKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~- 372 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL- 372 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 555555555543 2356677888888999999999999998776 34567899999999999999999999999998
Q ss_pred CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhc----------CChHHHHHHH
Q 003148 568 GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRA----------GLLGEALDLI 632 (844)
Q Consensus 568 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~----------g~~~eA~~~~ 632 (844)
..|+. ..+..+...+...|++++|...|+++.+...-.++ ...+..+...|.+. |++++|.+.+
T Consensus 373 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 -KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp -HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 45665 67888888999999999999999998773321222 12244556778888 9999999999
Q ss_pred HhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 633 KSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 633 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
+++ ...| +..+|..+...+...|+.++|...+++++++.|+++....
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 988 4445 5678999999999999999999999999999998865543
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.5e-15 Score=177.99 Aligned_cols=483 Identities=14% Similarity=0.086 Sum_probs=327.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---------------CCc----------------c------cHHHHH
Q 003148 169 FDRDVFVENCLINFYGECGDIVDGRRVFDEMSE---------------RNV----------------V------SWTSLI 211 (844)
Q Consensus 169 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---------------~~~----------------~------~~~~li 211 (844)
+..|+.+....|.+.++.|++.+.+++-++-.- +|. + .....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 456888999999999999999988887655320 111 1 112335
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCC-----------CCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHH
Q 003148 212 CACARRDLPKEAVYLFFEMVEEGIK-----------PNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNAL 280 (844)
Q Consensus 212 ~~~~~~g~~~~A~~l~~~m~~~g~~-----------pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 280 (844)
.+|++.-++..+-.+.-.+.+.+.. ........++..+-+.+++......++.-+..| ..|+.++|+|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnal 879 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNAL 879 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 5555554444443333333322211 122224445555555666666666677667766 5678889999
Q ss_pred HHHHHhcCCHHH----------------------------------------------------HHHHHHhcCCCCceeh
Q 003148 281 VDMYMKCGAVDT----------------------------------------------------AKQLFGECKDRNLVLC 308 (844)
Q Consensus 281 i~~y~~~g~~~~----------------------------------------------------A~~~f~~m~~~~~~~~ 308 (844)
...|...++-.+ |+-+.++ .|...|
T Consensus 880 akiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW 956 (1630)
T 1xi4_A 880 AKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELW 956 (1630)
T ss_pred HHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHH
Confidence 888875432111 1111111 122222
Q ss_pred --------------------------------HHHHHHHHHcCChHHHHHHHHHHHhcCC--CCChhhHHHHHHHHhhcC
Q 003148 309 --------------------------------NTIMSNYVRLGLAREALAILDEMLLHGP--RPDRVTMLSAVSASAQLG 354 (844)
Q Consensus 309 --------------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~ 354 (844)
...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+.
T Consensus 957 ~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka- 1035 (1630)
T 1xi4_A 957 GSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA- 1035 (1630)
T ss_pred HHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-
Confidence 3345667778888888888888774321 01112222233333333
Q ss_pred ChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHH-hcCCHHHHHHHHhhCC
Q 003148 355 DLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLI-KNGDVESAREVFSEMP 433 (844)
Q Consensus 355 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 433 (844)
+...+.++....-+ .....+...+...|.+++|..+|++... +...+..+. ..+++++|.++.++.
T Consensus 1036 D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC- 1102 (1630)
T ss_pred ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc-
Confidence 44444444433321 1133466777888999999999998753 222222223 778899999998877
Q ss_pred CCCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHH
Q 003148 434 GRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATAL 513 (844)
Q Consensus 434 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 513 (844)
.+..+|..+..++...|++++|++.|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.+
T Consensus 1103 -n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 -NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 34678889999999999999999999664 366778888999999999999999998887765 444445568
Q ss_pred hhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHH
Q 003148 514 VDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGW 593 (844)
Q Consensus 514 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 593 (844)
+..|+|.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.
T Consensus 1174 afaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 88999999988655443 4556777888888999999999999999985 37888999999999999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 594 HLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+.+++... ..+|..+..++...|++..|........ -++..+..++..|...|.+++|+..++++++++|.
T Consensus 1242 EaarKA~n-------~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1242 DGARKANS-------TRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HHHHHhCC-------HHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence 99887633 4678888888888999999988876533 34555668888899999999999999999999999
Q ss_pred CCchHHHHHHHHHHc--CCchHHHHHHH
Q 003148 674 KSGVHVLLSNIYASA--GKWTNVARVRL 699 (844)
Q Consensus 674 ~~~~~~~l~~~~~~~--g~~~~a~~~~~ 699 (844)
+.+.+.-|+.+|++- ++..|+.+.|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998888887654 45555555554
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.6e-15 Score=177.62 Aligned_cols=575 Identities=11% Similarity=0.080 Sum_probs=388.7
Q ss_pred cCCCCcchhhHHHHHHHhcCCCCChhHHHHhhC------------ccccCCCCC--C-----Cccc-------------H
Q 003148 59 GLGHKPSYISKVVCTCAQMGTFESLTYAQKAFD------------YYIKDNETS--A-----TLFM-------------Y 106 (844)
Q Consensus 59 g~~~~~~~~~~ll~~y~~~g~~~~~~~A~~~f~------------~~~~~~~~~--~-----~~~~-------------~ 106 (844)
.+..|+.+-...|.++++.|+ ..+..++-. .+.+..++. | |.+- .
T Consensus 720 ~~s~d~~vhfkyi~aa~~~~q---~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~ 796 (1630)
T 1xi4_A 720 NFSQDPDVHFKYIQAACKTGQ---IKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 796 (1630)
T ss_pred cccCChHHHHHHHHHHHHhCC---chhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc
Confidence 356688899999999999998 555544433 111111111 1 1110 1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCC-----------CcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 003148 107 NSLIRGYSCIGLGVEAISLYVELAGFGILP-----------DKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFV 175 (844)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 175 (844)
...|..|++.-++..+-.+...+...+... +.....-|+..+-+.+++..-...++.-+..| ..|+.+
T Consensus 797 ~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~ 875 (1630)
T 1xi4_A 797 QKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPAT 875 (1630)
T ss_pred hhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 234555555544444444443333322111 11123444455555555666666677777777 678999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhh------------cCCCCccc----------HHHHHHHHHhCCCchH-HHHHHHHHHH
Q 003148 176 ENCLINFYGECGDIVDGRRVFDE------------MSERNVVS----------WTSLICACARRDLPKE-AVYLFFEMVE 232 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~------------m~~~~~~~----------~~~li~~~~~~g~~~~-A~~l~~~m~~ 232 (844)
+|+|...|...++-.+. .+.+ ..++|+.. -.-||....+++.++. |.-+.++
T Consensus 876 hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r--- 950 (1630)
T 1xi4_A 876 HNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR--- 950 (1630)
T ss_pred HHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---
Confidence 99999999977653332 2211 11233221 2234444444444432 2222222
Q ss_pred cCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCC--cchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----C
Q 003148 233 EGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMK--ANALMVNALVDMYMKCGAVDTAKQLFGECKD-R-----N 304 (844)
Q Consensus 233 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~-----~ 304 (844)
-|...|..++.- +-+.=+++.+......++ .|+.--...+..|...|...+|+++++++.- + +
T Consensus 951 ----~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 951 ----KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred ----cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 244555555521 112334455554444332 2344446677888899999999999998763 2 2
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHH
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDM 384 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 384 (844)
...-|.++.+..+. +..+..+...+... .....+-..|...|.+++|.++++.... .....+.+
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL--- 1085 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL--- 1085 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---
Confidence 24566677777766 45666666665531 1133356677788999999999887521 11111222
Q ss_pred HHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVML 464 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 464 (844)
+...|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...+
T Consensus 1086 ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1086 IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 338889999999999874 4678999999999999999999999775 677788889999999999999999999877
Q ss_pred hCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHH
Q 003148 465 SERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAA 544 (844)
Q Consensus 465 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l 544 (844)
+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHH
Confidence 754 34333445888889998888644442 2 335556667999999999999999999986 489999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
...|.+.|++++|++.+++. -+..+|..+-.+|...|.+..|...... +..+...+..++..|.+.|.
T Consensus 1228 A~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCC
Confidence 99999999999999999977 3458899999999999999999987653 33456677789999999999
Q ss_pred hHHHHHHHHhC-CCCCC-hHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHHcCCchHHH
Q 003148 625 LGEALDLIKSM-PVEPN-DVIWGSLLAACQK--HQNVDIAAYAAERITELDP-----EKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
+++|+.+++.. +++|. ...|.-|...+.+ -+++.++.+.|..-..+.| ++...|.-+.-+|.+.|+|++|.
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99999999877 66664 3466666666655 4577888888888888777 67778999999999999999998
Q ss_pred HH
Q 003148 696 RV 697 (844)
Q Consensus 696 ~~ 697 (844)
..
T Consensus 1376 ~t 1377 (1630)
T 1xi4_A 1376 IT 1377 (1630)
T ss_pred HH
Confidence 53
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.7e-17 Score=178.13 Aligned_cols=302 Identities=12% Similarity=0.069 Sum_probs=230.8
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccccccccc
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGLIKNGDVESAREVFSEMPG---RDHISWNTMLGGL 447 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 447 (844)
++..+..+...|.+.|++++|...|+.+.+ .+...|..+...+...|++++|...|+++.+ .+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456677888899999999999999988754 3566788888888888888888888887654 2456777788888
Q ss_pred cccCChHHHHHHHHHHHhCCccc---ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 448 TQENMFEEAMELFRVMLSERIKV---DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 448 ~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
...|++++|+..|+++.+. .| +.......+. .+.. ...+..+...|...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHH
Confidence 8888888888888888764 34 2111111110 0000 111233456788889999
Q ss_pred HHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 525 RAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 525 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
+|.+.|+++. ..+...|..+...+...|++++|+..++++.+ ..|+. .++..+...+...|++++|...++.+.
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998765 45677888888899999999999999999888 45654 678888888889999999999999888
Q ss_pred hhcCCCCCc-chHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCChH-----HHHHHHHHHHhcCCHHHHH
Q 003148 601 DIHGVSPQI-VHYG------------CMVDLLGRAGLLGEALDLIKSM-PVEPNDV-----IWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 601 ~~~~~~p~~-~~~~------------~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-----~~~~ll~~~~~~g~~~~a~ 661 (844)
+ ..|+. ..+. .++..+.+.|++++|.+.++++ ...|+.. .|..+...+...|++++|.
T Consensus 216 ~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 K---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp H---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred h---hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7 34442 2222 3367789999999999999987 4445432 3455677889999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=2e-17 Score=177.54 Aligned_cols=318 Identities=13% Similarity=0.067 Sum_probs=249.6
Q ss_pred hhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCcchHHHHHHHH
Q 003148 340 RVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN---KTVVSWNSLIAGL 416 (844)
Q Consensus 340 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 416 (844)
...+..+...+...|+++.|...+..+++... .+...+..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34566777888899999999999999988643 3567888999999999999999999998764 3667899999999
Q ss_pred HhcCCHHHHHHHHhhCCCCCc---c---ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHH
Q 003148 417 IKNGDVESAREVFSEMPGRDH---I---SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDL 490 (844)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~~---~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 490 (844)
...|++++|...|++..+.++ . .|..+. .... ...+......+...|+++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-----------------~~~~------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV-----------------KADE------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH-----------------HHHH------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH-----------------HHHH------HHHHHHHHHHHHHccCHHH
Confidence 999999999999998866433 1 222111 0000 0112223344556677777
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 491 AKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|++..+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~- 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 777777766654 3456778888899999999999999998876 34678899999999999999999999999998
Q ss_pred CCCCChhH-HH------------HHHHHHhccCcHHHHHHHHHHhHhhcCCCCCc-----chHHHHHHHHHhcCChHHHH
Q 003148 568 GIKPDSIV-FV------------GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI-----VHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 568 g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~ 629 (844)
..|+... +. .+...+...|++++|...++++.+ ..|+. ..+..+...|.+.|++++|.
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5666533 22 235668899999999999999988 33442 33556889999999999999
Q ss_pred HHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 630 DLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 630 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999988 4455 677999999999999999999999999999999998888888776543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=9.2e-17 Score=169.87 Aligned_cols=320 Identities=13% Similarity=0.123 Sum_probs=123.1
Q ss_pred hcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHH
Q 003148 286 KCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGY 365 (844)
Q Consensus 286 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 365 (844)
+.|++++|.++++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++++..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999997664 9999999999999999999999763 5777999999999999999999998887
Q ss_pred HHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccc
Q 003148 366 VLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLG 445 (844)
Q Consensus 366 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 445 (844)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+++.|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7774 45578889999999999999998888764 66668888888888888888888888766 36777777
Q ss_pred cccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHH
Q 003148 446 GLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQR 525 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 525 (844)
++.+.|++++|++.++++ .+..||..++.+|...|+++.|..
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~-------------------------------- 198 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM-------------------------------- 198 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH--------------------------------
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH--------------------------------
Confidence 888888888888777776 255666666666666666666632
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHh--ccCcHHHHHHHHHHhHhh
Q 003148 526 AMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACS--HGGLVNQGWHLFRSMTDI 602 (844)
Q Consensus 526 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 602 (844)
....+. .++.-...++..|.+.|++++|+.+++..+. ..+.. ..|+.+.-+++ +-+++.+.++.|. ++
T Consensus 199 ---~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ 269 (449)
T 1b89_A 199 ---CGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SR 269 (449)
T ss_dssp ---TTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TT
T ss_pred ---HHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HH
Confidence 222221 1111122355566666666666666666654 44433 34444444444 3344555555443 22
Q ss_pred cCCCC------CcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 603 HGVSP------QIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 603 ~~~~p------~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
-+++| +..+|.-++-+|...++++.|...+-+-+ |+..--..+.....+-.+.|.-.++..=-++..|
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 33555 46788899999999999999888766552 1211112223334444555544444443344444
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.7e-16 Score=167.79 Aligned_cols=230 Identities=15% Similarity=0.124 Sum_probs=87.6
Q ss_pred chhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 003148 65 SYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFV 144 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 144 (844)
...+.||. ++|+ +++|...++ +.+.|+ +|..|..++.+.|++++|++.|.+. +|..+|..+
T Consensus 7 ~a~~~ll~---~~~~---ld~A~~fae-----~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V 67 (449)
T 1b89_A 7 SAVQVLIE---HIGN---LDRAYEFAE-----RCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HccC---HHHHHHHHH-----hCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHH
Confidence 34444553 6777 999999999 665554 8999999999999999999999753 588899999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHH
Q 003148 145 LNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAV 224 (844)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 224 (844)
+.++...|++++|...+...++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|.
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp -------------------------------------------CHHHHTTTTTC---C----------------CTTTHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988888774 46688999999999999999999988864 78889999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 003148 225 YLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRN 304 (844)
Q Consensus 225 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 304 (844)
.+|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ 206 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VH 206 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC
Confidence 999977 37888888888888888888888776 367888888888888888888877666544 23
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLH 334 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 334 (844)
..-...++..|.+.|++++|+.+|+..+..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 333445777888888888888888777643
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.1e-16 Score=167.54 Aligned_cols=285 Identities=13% Similarity=0.044 Sum_probs=193.9
Q ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCCh
Q 003148 374 WDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMF 453 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 453 (844)
+..++..+...+...|++++|..+|+++.+.++ .+...+..++..+...|++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------~~~~~~~~~~~~~~~~~~~ 72 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP----------------------------FHASCLPVHIGTLVELNKA 72 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------TCTTTHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------------------CChhhHHHHHHHHHHhhhH
Confidence 334445556666666666666666666543110 1223333444455555555
Q ss_pred HHHHHHHHHHHhCCccc-ChhhHHhHHHHccccC-chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHH
Q 003148 454 EEAMELFRVMLSERIKV-DRVTMVGVASACGYLG-ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFR 531 (844)
Q Consensus 454 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 531 (844)
++|+.+++++.+. .| +...+..+...+...| +.+.|...+..+.+.. +.+...+..+...|...|++++|...|+
T Consensus 73 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 73 NELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666555542 22 2334444445555555 5666666665555443 2345567777888888888888888888
Q ss_pred hcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC--
Q 003148 532 RME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGV-- 605 (844)
Q Consensus 532 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-- 605 (844)
++. ..+...|..+...|...|++++|++.|+++.+ ..|+. ..+..+...+...|++++|..+++++.+...-
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 765 33456777788888888888888888888887 55654 67777888888888888888888888763211
Q ss_pred -----CCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 606 -----SPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 606 -----~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
......+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 233567888888888999999999888887 3334 566888888888888999999999999999999888888
Q ss_pred HHHHHHH-HHcCCc
Q 003148 679 VLLSNIY-ASAGKW 691 (844)
Q Consensus 679 ~~l~~~~-~~~g~~ 691 (844)
..++.++ ...|+.
T Consensus 308 ~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 308 TMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhCch
Confidence 8888877 444543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=4e-16 Score=165.35 Aligned_cols=262 Identities=11% Similarity=0.032 Sum_probs=224.2
Q ss_pred CCccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHh
Q 003148 435 RDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALV 514 (844)
Q Consensus 435 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 514 (844)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|+.++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355566677778888899999999999987753 2244556667777888999999999999998875 34677888899
Q ss_pred hhHHhcC-CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH
Q 003148 515 DMFARCG-DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV 589 (844)
Q Consensus 515 ~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 589 (844)
..|...| ++++|...|++.. ..+...|..+...|...|++++|+..|+++.+ ..|+. ..+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999876 34577899999999999999999999999998 55654 6777788899999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCChHHHHHHHHHHHhcCCH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PV----------EPNDVIWGSLLAACQKHQNV 657 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~ 657 (844)
++|..+++++.+ ..|+ ...+..++..|.+.|++++|.+.++++ .. ..+..+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999987 4454 678889999999999999999999877 11 23456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 658 DIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987654
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.2e-16 Score=172.62 Aligned_cols=276 Identities=13% Similarity=0.048 Sum_probs=209.5
Q ss_pred hcCCHHHHHH-HHhhCCC---C----CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchH
Q 003148 418 KNGDVESARE-VFSEMPG---R----DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALD 489 (844)
Q Consensus 418 ~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 489 (844)
..|++++|.+ .|++... . +...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455566655 5554332 1 24456667777777888888888888877652 224456666777777788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHH---------------HHHHHHhc
Q 003148 490 LAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTA---------------AIGAMAME 551 (844)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~ 551 (844)
.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.. .+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888777765 34667778888888888888888888887652 22222221 13334488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHH
Q 003148 552 GNGEQAVELFNEMLRQGIKPD---SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 552 g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e 627 (844)
|++++|+..|+++++ ..|+ ..++..+...+...|++++|..+++++.+ +.|+ ...|..++..|.+.|++++
T Consensus 195 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 5566 57888899999999999999999999988 3454 6789999999999999999
Q ss_pred HHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHHcCCchHH
Q 003148 628 ALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK-----------SGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 628 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 694 (844)
|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +..|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 4445 56789999999999999999999999999999887 67899999999999999999
Q ss_pred HHHHHH
Q 003148 695 ARVRLQ 700 (844)
Q Consensus 695 ~~~~~~ 700 (844)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998753
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=2.3e-14 Score=162.93 Aligned_cols=405 Identities=9% Similarity=0.037 Sum_probs=270.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003148 273 NALMVNALVDMYMKCGAVDTAKQLFGECKDR---NLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSA 349 (844)
Q Consensus 273 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 349 (844)
|...+..++. +.+.|++++|+.+|+++.+. +...|...+..+.+.|++++|.++|++.+... |+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 5566666666 36677777777777776552 34467777777777777777777777777653 555444444432
Q ss_pred H-hhcCChhhHHH----HHHHHHHh-CCCc-hhhHHHHHHHHHHH---------cCCHHHHHHHHhhcCC-CCc---chH
Q 003148 350 S-AQLGDLLCGRM----CHGYVLRN-GLEG-WDSICNTMIDMYMK---------CGKQEMACRIFDHMSN-KTV---VSW 409 (844)
Q Consensus 350 ~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~Li~~y~~---------~g~~~~A~~~f~~m~~-~~~---~~~ 409 (844)
. ...|+.+.+++ ++...++. |..+ +..+|...+....+ .|+++.|+.+|++... |+. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34456665554 55555443 5443 45667777776655 7889999999998775 321 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHH------HhCC---cccCh--------
Q 003148 410 NSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVM------LSER---IKVDR-------- 472 (844)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g---~~p~~-------- 472 (844)
..........|. ..+..++.. ..+++.+|..+++++ .+.. +.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 322221111111 111111111 234456666555542 1111 22321
Q ss_pred hhHHhHHHHcc----ccCch----HHHHHHHHHHHHhCCCCchhHHhHHhhhHHh-------cCCHH-------HHHHHH
Q 003148 473 VTMVGVASACG----YLGAL----DLAKWIYAYIEKNGIHCDMQLATALVDMFAR-------CGDPQ-------RAMQVF 530 (844)
Q Consensus 473 ~t~~~ll~a~~----~~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~~ 530 (844)
..|...+.-.. ..++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 12222221111 11222 35667787777753 4467788888888775 69987 899999
Q ss_pred HhcCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 003148 531 RRMEK---R-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHG 604 (844)
Q Consensus 531 ~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 604 (844)
++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|+.+|++..+
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--- 384 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--- 384 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 98763 3 578999999999999999999999999999 67765 3688888888899999999999999987
Q ss_pred CCCC-cchHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----
Q 003148 605 VSPQ-IVHYGCMVDL-LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG---- 676 (844)
Q Consensus 605 ~~p~-~~~~~~li~~-~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 676 (844)
..|. ...|...+.+ +...|+.++|.++|++. ...| +...|..++......|+.++|..+++++++..|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 3343 3333333323 34689999999999987 4445 5779999999999999999999999999998877665
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|...+......|+.+++.++.+++.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777778888899999999999988764
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2.4e-15 Score=156.02 Aligned_cols=270 Identities=8% Similarity=0.068 Sum_probs=188.8
Q ss_pred HHHcCCHHHHHHHHhhcCCCCc----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSNKTV----VSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELF 460 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 460 (844)
....|++..|+..++.....++ .....+..+|...|+++.|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456777777777766554222 122334555666666655555554432223334444444444455555555555
Q ss_pred HHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhH
Q 003148 461 RVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSA 540 (844)
Q Consensus 461 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~ 540 (844)
+++...+..|+ +...+..+...|.+.|++++|.+.|++ ..+...
T Consensus 89 ~~ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~ 132 (291)
T 3mkr_A 89 DREMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLEC 132 (291)
T ss_dssp HHHHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHH
T ss_pred HHHHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHH
Confidence 55444333332 444556677888999999999999998 567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH---HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF---VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
|..++..|.+.|+.++|++.|+++.+ ..|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~ 208 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 99999999999999999999999998 46776422 12334445669999999999999984 3345778999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDI-AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
+|.+.|++++|++.++++ ...| +..+|..++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~ 284 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRL 284 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHH
Confidence 999999999999999997 5556 56789999999999998865 6789999999999987443 445666666665
Q ss_pred HHHH
Q 003148 695 ARVR 698 (844)
Q Consensus 695 ~~~~ 698 (844)
..-|
T Consensus 285 ~~~~ 288 (291)
T 3mkr_A 285 VLQY 288 (291)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5433
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=2.7e-14 Score=160.64 Aligned_cols=366 Identities=12% Similarity=0.046 Sum_probs=234.0
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CceehHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCChhhH
Q 003148 273 NALMVNALVDMYMK----CGAVDTAKQLFGECKDR-NLVLCNTIMSNYVR----LGLAREALAILDEMLLHGPRPDRVTM 343 (844)
Q Consensus 273 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 343 (844)
++.....|...|.. .+++++|...|++..+. +...+..+...|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444455555555 56666666666554332 44455555555555 566666666666655543 22233
Q ss_pred HHHHHHHhh----cCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 003148 344 LSAVSASAQ----LGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMK----CGKQEMACRIFDHMSNKTVVSWNSLIAG 415 (844)
Q Consensus 344 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~~~~~~~~li~~ 415 (844)
..+-..+.. .++.+.|...+....+.| ++..+..|..+|.. .++.++|...|++..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------- 180 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----------- 180 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------
Confidence 233333333 344444444444444433 23334445555554 45566666655554321
Q ss_pred HHhcCCHHHHHHHHhhCCCCCccccccccccccc----cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccc----cCc
Q 003148 416 LIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ----ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGY----LGA 487 (844)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~ 487 (844)
.+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++
T Consensus 181 -------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 181 -------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp -------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred -------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 123333333333333 556666666666665543 23333333333332 567
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhc-----CChHHH
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFAR----CGDPQRAMQVFRRMEK-RDVSAWTAAIGAMAME-----GNGEQA 557 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A 557 (844)
.++|...+....+.+ +...+..|..+|.. .++.++|...|+...+ .+...+..+...|... ++.++|
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 777777777776654 34455666677776 8899999999988764 4677888888888887 899999
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccC---cHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCChHHHHH
Q 003148 558 VELFNEMLRQGIKPDSIVFVGVLTACSHGG---LVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----AGLLGEALD 630 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~ 630 (844)
+..|++..+.| +...+..+...+...| +.++|.++|++..+ . .+...+..|..+|.. .+++++|.+
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999864 4456667777777656 78999999999987 2 356788889999988 899999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHH
Q 003148 631 LIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPE---KSGVHVLLSNIYAS 687 (844)
Q Consensus 631 ~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 687 (844)
.+++.--..+...+..|...+.. .+|.++|...++++++.+|+ ++.....|+.++..
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99987323367788888888887 89999999999999999854 66666667666553
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=171.11 Aligned_cols=258 Identities=12% Similarity=-0.004 Sum_probs=198.7
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVD 515 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (844)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456777777777888888888888877642 2245667777777777888888888888777764 335677888888
Q ss_pred hHHhcCCHHHHHHHHHhcCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhHHHHH
Q 003148 516 MFARCGDPQRAMQVFRRMEKRD-------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD---SIVFVGV 579 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~l 579 (844)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++++ ..|+ ..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHHH
Confidence 8889999999999888876321 12233457788899999999999999998 4564 5788888
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN 656 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 656 (844)
...+...|++++|..+|+++.+ ..|+ ...|..++.+|.+.|++++|++.++++ ...| +..+|..+...+...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 8999999999999999999988 3444 778899999999999999999999987 4455 47789999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 657 VDIAAYAAERITELDPE------------KSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
+++|...+++++++.|+ +...+..|+.++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998876 356788999999999999988877644
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=1.7e-15 Score=163.41 Aligned_cols=255 Identities=17% Similarity=0.106 Sum_probs=204.8
Q ss_pred ccccCChHHHHH-HHHHHHhCCc-cc--ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCC
Q 003148 447 LTQENMFEEAME-LFRVMLSERI-KV--DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD 522 (844)
Q Consensus 447 ~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 522 (844)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8887654321 11 34567778888899999999999999999875 4467888899999999999
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH----------------HHHHH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVG----------------VLTAC 583 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----------------ll~a~ 583 (844)
+++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+...... .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999876 45788999999999999999999999999999 5565532221 23344
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAA 661 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 661 (844)
...|++++|..+|+++.+...-.++...+..++.+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4899999999999999883322224778899999999999999999999987 4445 5679999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..++++++++|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=1e-15 Score=165.04 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=196.2
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
+...+......+...|+++.|..++..+++.. +.+...+..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777888899999999999999998876 4468889999999999999999999999876 4568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChh-HH----------HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSI-VF----------VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMV 616 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 616 (844)
|...|++++|+..|+++++ ..|+.. .+ ..+...+...|++++|..+++++.+...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 556542 22 3347788999999999999999998433222577899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNV 694 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 694 (844)
.+|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 4445 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003148 695 ARVRLQMKEQ 704 (844)
Q Consensus 695 ~~~~~~m~~~ 704 (844)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=7.3e-15 Score=164.48 Aligned_cols=240 Identities=9% Similarity=-0.048 Sum_probs=149.5
Q ss_pred cCChHHHHHHHHHHHhCCcccCh-hhHHhHHHHc----cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDR-VTMVGVASAC----GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQ 524 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~ 524 (844)
.++.++|++.|++..+. .|+. ..+..+...+ ...++.++|.+.+....+.. +.+..++..+...|.+.|+++
T Consensus 188 ~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp SCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchH
Confidence 34555666666665542 3332 2232222222 23456667777777666654 335566677777788888888
Q ss_pred HHHHHHHhcC---CCCHhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 525 RAMQVFRRME---KRDVSAWTAAIGAMAM-------------------EGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 525 ~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+|...|++.. +.+..+|..+...|.. .+..++|+..|++..+ ..|+. .++..+..
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHH
Confidence 8888877665 3345566666555432 2345778888888887 56665 67888888
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCCcc----hHHHHHHH-HHhcCChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcC
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQIV----HYGCMVDL-LGRAGLLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQ 655 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~-~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 655 (844)
.+...|++++|..+|++..+ +.|+.. .+..+... +...|+.++|++.+++. .+.|+...+...
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 99999999999999999887 344422 22333332 35678999999999887 677776544332
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-
T Consensus 412 -~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp -HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34556778888999999999999999999999999999999999988764
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=6.5e-15 Score=152.69 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=187.3
Q ss_pred ccCChHHHHHHHHHHHhCCcccCh--hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHH
Q 003148 449 QENMFEEAMELFRVMLSERIKVDR--VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRA 526 (844)
Q Consensus 449 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 526 (844)
..|++.+|+..+++... ..|+. .....+..++...|+++.+...+.. .-+|+......+...|.+.|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 45666666666655432 23332 2334445666667777666654422 2345667778888999999999999
Q ss_pred HHHHHhcC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 527 MQVFRRME----KR-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 527 ~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.+.++++. .| +...|..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|...|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999864 23 566788888999999999999999987 34557888889999999999999999999998
Q ss_pred hcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHhC-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 602 IHGVSPQIVHY---GCMVDLLGRAGLLGEALDLIKSM-P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 602 ~~~~~p~~~~~---~~li~~~~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
..|+.... ..++..+...|++++|..+|+++ . .+.+...|+.+..++...|++++|+..++++++++|+++.
T Consensus 159 ---~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 159 ---QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 34664211 23445555669999999999998 3 3346779999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchH-HHHHHHHHHhCC
Q 003148 677 VHVLLSNIYASAGKWTN-VARVRLQMKEQG 705 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 705 (844)
++..++.++...|++++ +.++++++.+..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987 568888887653
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.5e-13 Score=156.05 Aligned_cols=414 Identities=11% Similarity=0.030 Sum_probs=261.8
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHH
Q 003148 203 NVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVD 282 (844)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 282 (844)
|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|+.+++.+++.. |++..+..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5667888887 477888888888888887642 2244457777777777788888888888777654 45556665554
Q ss_pred -HHHhcCCHHHHHH----HHHhcC-----C-CCceehHHHHHHHHH---------cCChHHHHHHHHHHHhcCCCCCh--
Q 003148 283 -MYMKCGAVDTAKQ----LFGECK-----D-RNLVLCNTIMSNYVR---------LGLAREALAILDEMLLHGPRPDR-- 340 (844)
Q Consensus 283 -~y~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~-- 340 (844)
.+...|+.+.|++ +|++.. + .+...|...+....+ .|++++|..+|++.++. |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 2234566665554 555431 1 234456666655443 56667777777776652 321
Q ss_pred -hhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 003148 341 -VTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKN 419 (844)
Q Consensus 341 -~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 419 (844)
..|..........+. .+...++. .+.++++.|..++..+..
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~---------------- 206 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYET---------------- 206 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHH----------------
Confidence 111111100000000 00011110 122344555544443100
Q ss_pred CCHHHHHHHHhhCC---CCC--------cccccccccccc----ccCCh----HHHHHHHHHHHhCCccc-ChhhHHhHH
Q 003148 420 GDVESAREVFSEMP---GRD--------HISWNTMLGGLT----QENMF----EEAMELFRVMLSERIKV-DRVTMVGVA 479 (844)
Q Consensus 420 g~~~~A~~~~~~m~---~~~--------~~~~~~li~~~~----~~g~~----~~A~~l~~~m~~~g~~p-~~~t~~~ll 479 (844)
..+.++... .++ ...|...+.-.. ..++. ++++.+|++.... .| +...|....
T Consensus 207 -----~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~ 279 (530)
T 2ooe_A 207 -----VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAA 279 (530)
T ss_dssp -----HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred -----HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 000000000 000 012222211110 11222 4677788887764 34 344555555
Q ss_pred HHccc-------cCchH-------HHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-CH-hHH
Q 003148 480 SACGY-------LGALD-------LAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME--KR-DV-SAW 541 (844)
Q Consensus 480 ~a~~~-------~~~~~-------~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~-~~~ 541 (844)
..+.. .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++. .| +. ..|
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 359 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH
Confidence 54443 67776 888888888763334568889999999999999999999999876 33 33 589
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTA-CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 618 (844)
..++..+.+.|+.++|.++|++.++ ..|+. ..+...... +...|+.++|..+|+...+. .|+ ...|..+++.
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHH
Confidence 9999999999999999999999998 44543 333333222 33589999999999999883 354 7789999999
Q ss_pred HHhcCChHHHHHHHHhC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 619 LGRAGLLGEALDLIKSM----PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++++..|+
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999987 23332 348999999999999999999999999998885
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=182.01 Aligned_cols=132 Identities=11% Similarity=0.149 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcC-------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 003148 170 DRDVFVENCLINFYGECGDIVDGRRVFDEMS-------ERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTM 242 (844)
Q Consensus 170 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 242 (844)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445789999999999999999999998764 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003148 243 VCVISACAKLQNL-ELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECK 301 (844)
Q Consensus 243 ~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 301 (844)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++.++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 9999999999985 7899999999999999999999999988888766666666654443
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.8e-13 Score=153.90 Aligned_cols=352 Identities=11% Similarity=0.019 Sum_probs=255.6
Q ss_pred CCceehHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChhhHHHHHHHHHHhCCCch
Q 003148 303 RNLVLCNTIMSNYVR----LGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQ----LGDLLCGRMCHGYVLRNGLEGW 374 (844)
Q Consensus 303 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~ 374 (844)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355666666666666 677777777777766543 22333333333333 445555555555544443 2
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccc-
Q 003148 375 DSICNTMIDMYMK----CGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQ- 449 (844)
Q Consensus 375 ~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~- 449 (844)
+..+..|..+|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------------------------------GRDSGQQSMGDAYFEG 160 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHcC
Confidence 2333344444444 44445554444443321 233444455555544
Q ss_pred ---cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccc----cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh---
Q 003148 450 ---ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGY----LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR--- 519 (844)
Q Consensus 450 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k--- 519 (844)
.+++++|++.|++..+.| +...+..+-..+.. .++.++|...+....+.+ +...+..|..+|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 678999999999988765 45555555555555 789999999999998876 56677788888886
Q ss_pred -cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-----Cc
Q 003148 520 -CGDPQRAMQVFRRME-KRDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHG-----GL 588 (844)
Q Consensus 520 -~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~ 588 (844)
.++.++|...|++.. ..+...+..+...|.. .++.++|++.|++..+.| +...+..+...+... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 899999999999876 4567788888888888 899999999999998754 445666777777776 89
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC---ChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAG---LLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAA 661 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~ 661 (844)
.++|..+|++..+ . .+...+..|..+|.+.| +.++|.+.|++.-...+...|..|...+.. .++.++|.
T Consensus 312 ~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999987 2 23567788888888867 789999999988323578889999998888 89999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCC
Q 003148 662 YAAERITELDPEKSGVHVLLSNIYAS----AGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 705 (844)
..++++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.+
T Consensus 388 ~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 388 IWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999864 57789999999999 899999999999998875
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=3.9e-15 Score=157.47 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=196.0
Q ss_pred cccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhH
Q 003148 438 ISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMF 517 (844)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 517 (844)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+...+..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344455556666677777777777766532 1244455556666667777777777777776654 33566777778888
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEK---RDVSAWTAA--------------IG-AMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVG 578 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 578 (844)
.+.|++++|.+.|+++.+ .+...+..+ .. .+...|++++|+..++++.+ ..|+ ...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 888888888888877652 222333333 22 37778899999999999998 4554 477888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
+...+...|++++|..+++++.+ ..|+ ...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 88899999999999999999987 3444 678889999999999999999999987 4445 5678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 656 NVDIAAYAAERITELDPE------------KSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
++++|...+++++++.|+ ++..+..++.+|...|++++|.+++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999998 6788999999999999999999988643
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=177.75 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=131.5
Q ss_pred CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 003148 502 GIHCDMQLATALVDMFARCGDPQRAMQVFRRME-------KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI 574 (844)
Q Consensus 502 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 574 (844)
....-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345556789999999999999999999997754 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCc-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCC------hHHHHHH
Q 003148 575 VFVGVLTACSHGGL-VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPN------DVIWGSL 647 (844)
Q Consensus 575 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~------~~~~~~l 647 (844)
||+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++..++ .|+ ..+-.-|
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHH
Confidence 99999999999997 5789999999998 899999999999998888776555555553333 222 2233334
Q ss_pred HHHHHhcC---------CHHHHHHHHHHHHh
Q 003148 648 LAACQKHQ---------NVDIAAYAAERITE 669 (844)
Q Consensus 648 l~~~~~~g---------~~~~a~~~~~~~~~ 669 (844)
...|.+.+ ..++-...+++-++
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 45555544 23555555555553
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.4e-14 Score=143.20 Aligned_cols=194 Identities=16% Similarity=0.069 Sum_probs=159.7
Q ss_pred CCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHH
Q 003148 504 HCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGV 579 (844)
Q Consensus 504 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 579 (844)
+++...+..+...|.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4566777888889999999999999999876 34678899999999999999999999999999 67876 678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCChHHHHH
Q 003148 580 LTACSHG-----------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPNDVIWGS 646 (844)
Q Consensus 580 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ 646 (844)
..++... |++++|...+++..+ +.|+ ...+..+..+|...|++++|++.|+++ ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999988 5676 678889999999999999999999987 22267889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-13 Score=139.31 Aligned_cols=216 Identities=11% Similarity=0.010 Sum_probs=176.7
Q ss_pred HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C----C----HhHHHHH
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK--R----D----VSAWTAA 544 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~----~----~~~~~~l 544 (844)
+..+...+...|++++|...+..+.+.. .+...+..+...|...|++++|...|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344445555666666666666666655 5667777788888888888888888887652 1 1 5778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 003148 545 IGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG 623 (844)
Q Consensus 545 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 623 (844)
...|...|++++|++.|+++.+ +.|+.. .+...|++++|...++.+.+ ..|+ ...+..++..|.+.|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998 566643 45567889999999999887 4454 667888999999999
Q ss_pred ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 624 LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 624 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 4444 57789999999999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 003148 702 KEQ 704 (844)
Q Consensus 702 ~~~ 704 (844)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.9e-13 Score=140.45 Aligned_cols=250 Identities=10% Similarity=-0.080 Sum_probs=201.8
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCc--cc-ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhh
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERI--KV-DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDM 516 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (844)
+..+...+...|++++|+..|+++.+... .| +..++..+...+...|++++|...+..+.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 86 (275)
T 1xnf_A 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIY 86 (275)
T ss_dssp GGGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred CcceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 33444566778999999999999988632 22 34667778888899999999999999998875 3467888999999
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGW 593 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 593 (844)
|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|.
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999877 34678999999999999999999999999999 6788766666666677889999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 594 HLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-----DVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 594 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
.+++..... .|+......++..+...++.++|.+.++++ ...|+ ..+|..+...+...|++++|...++++
T Consensus 165 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 165 EVLKQHFEK---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHH---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888772 333333345788888889999999999887 43332 468888999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 668 TELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 668 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
++++|++...+ +.++...|++++|.+.+
T Consensus 242 l~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999875443 66788889999887765
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=2.9e-13 Score=142.91 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=192.7
Q ss_pred hhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHH
Q 003148 473 VTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMA 549 (844)
Q Consensus 473 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 549 (844)
..+......+...|++++|..++..+.+.. +.+...+..+...|.+.|++++|...|+++. ..+...|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 445556667788899999999999998875 3467788889999999999999999999876 446788999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHH--------------H--HHhccCcHHHHHHHHHHhHhhcCCCC-CcchH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVL--------------T--ACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHY 612 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--------------~--a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~ 612 (844)
..|++++|++.|+++.+ ..|+.......+ . .+...|++++|..+++++.+ ..| +...+
T Consensus 101 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~ 175 (327)
T 3cv0_A 101 NEHNANAALASLRAWLL--SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE---MNPNDAQLH 175 (327)
T ss_dssp HTTCHHHHHHHHHHHHH--TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH---HSTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh---hCCCCHHHH
Confidence 99999999999999998 566653322222 3 37788999999999999988 334 47788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987 4445 567899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhC
Q 003148 691 WTNVARVRLQMKEQ 704 (844)
Q Consensus 691 ~~~a~~~~~~m~~~ 704 (844)
+++|.+.++++.+.
T Consensus 256 ~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 256 YDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.5e-12 Score=142.59 Aligned_cols=388 Identities=8% Similarity=-0.039 Sum_probs=206.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCC-cchhHHHHHHH
Q 003148 204 VVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGMK-ANALMVNALVD 282 (844)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~ 282 (844)
...||.|...+...|++++|++.|++..+. .......... ....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 345677777777777777777777665431 0000000011 23456777888
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----CceehHHHHHHHHHc--CChHHHHHHHHHHHhcCCCCChhhH-HHHHH
Q 003148 283 MYMKCGAVDTAKQLFGECKD-------R----NLVLCNTIMSNYVRL--GLAREALAILDEMLLHGPRPDRVTM-LSAVS 348 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 348 (844)
.|...|++++|...|++..+ + ...+++.+..++... +++++|++.|++..+. .|+...+ ..+..
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888888887765431 1 123444444455543 4678888888888765 4544322 22222
Q ss_pred H---HhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCC
Q 003148 349 A---SAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMK----CGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGD 421 (844)
Q Consensus 349 ~---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 421 (844)
+ ....++.+.+.+.+...++.... +..++..+...+.+ .|+.++|.+.+++...
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~------------------ 241 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE------------------ 241 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHH------------------
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------------------
Confidence 2 23344555555555555544221 22223333222222 2334444444443322
Q ss_pred HHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhCCcccChh-hHHhHHHHccccCchHHHHHHHHHHHH
Q 003148 422 VESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRV-TMVGVASACGYLGALDLAKWIYAYIEK 500 (844)
Q Consensus 422 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~ 500 (844)
....+...|..+...|...|++++|+..|++..+. .|+.. ++..+..++... +... ..
T Consensus 242 ----------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~-----~~~~----~~ 300 (472)
T 4g1t_A 242 ----------KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAK-----VFQV----MN 300 (472)
T ss_dssp ----------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH-----HHHH----HH
T ss_pred ----------hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH-----HHHh----hh
Confidence 01134556777888888899999999999888764 45433 333222222110 0000 00
Q ss_pred hCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---
Q 003148 501 NGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI--- 574 (844)
Q Consensus 501 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--- 574 (844)
. ............+..+.|...|+... ..+...|..+...|...|++++|++.|++.++. .|+..
T Consensus 301 ~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~ 371 (472)
T 4g1t_A 301 L-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQ 371 (472)
T ss_dssp C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHH
T ss_pred H-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHH
Confidence 0 00111111222344677888887665 445678999999999999999999999999984 45432
Q ss_pred -HHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH
Q 003148 575 -VFVGVLT-ACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA 650 (844)
Q Consensus 575 -t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 650 (844)
.+..+.. ...+.|+.++|+..|++..+ +.|+....... .+.+.+++++. ...| +..+|..|...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2333333 34578999999999999988 66764332222 23344444443 2334 56799999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
+...|++++|++.+++++++.|.+|.+...+|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999887766554
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4e-13 Score=137.88 Aligned_cols=237 Identities=14% Similarity=0.042 Sum_probs=145.0
Q ss_pred cccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCC
Q 003148 446 GLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGD 522 (844)
Q Consensus 446 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~ 522 (844)
.+...|++++|+..|++..+. .|+ ...+..+..++...|+++.|...+..+.+....+ ....+..+...|.+.|+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 344444455555555544432 221 2234444444444555555555554444422111 12235566677777777
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRS 598 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 598 (844)
+++|.+.|++.. ..+...|..+...|...|++++|++.|++.++ ..|+. ..+..+...+...+++++|...|++
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777655 33556777777777778888888888877776 45655 3444444244445588888888887
Q ss_pred hHhhcCCCCC-cchHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCCh------HHHHHHHHHHHhcCCHHHHHHHH
Q 003148 599 MTDIHGVSPQ-IVHYGCMVDLLGRAGL---LGEALDLIKSM----PVEPND------VIWGSLLAACQKHQNVDIAAYAA 664 (844)
Q Consensus 599 m~~~~~~~p~-~~~~~~li~~~~~~g~---~~eA~~~~~~m----~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~ 664 (844)
+.+ ..|+ ...+..+..++...|+ +++|...++++ ...|+. .+|..+...+...|++++|...+
T Consensus 168 a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 168 VLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776 3444 5566667777777776 66677766665 122332 46777888889999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 665 ERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 665 ~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
+++++++|+++.+...+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999888777766655443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.4e-13 Score=136.92 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=177.7
Q ss_pred ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCC--Cc----hhHHhH
Q 003148 439 SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIH--CD----MQLATA 512 (844)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~----~~~~~~ 512 (844)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555666677777777777766655 55666666666777777777777777666554311 11 567788
Q ss_pred HhhhHHhcCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH
Q 003148 513 LVDMFARCGDPQRAMQVFRRME--KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV 589 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 589 (844)
+...|.+.|++++|...|++.. .++ ...+...|++++|+..++++.. ..|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 8899999999999999998876 333 2346677889999999999998 66765 5788888899999999
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAER 666 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 666 (844)
++|...++++.+ ..|+ ...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...+++
T Consensus 156 ~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999988 3343 678889999999999999999999987 4445 467899999999999999999999999
Q ss_pred HHhcC------CCCCchHHHHHH
Q 003148 667 ITELD------PEKSGVHVLLSN 683 (844)
Q Consensus 667 ~~~~~------p~~~~~~~~l~~ 683 (844)
++++. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99998 777666555543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=2.7e-12 Score=129.97 Aligned_cols=195 Identities=10% Similarity=-0.002 Sum_probs=164.6
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTA 582 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 582 (844)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHH
Confidence 5567778888888999999999988765 34677888889999999999999999999988 4554 4677888888
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 659 (844)
+...|++++|.++++++.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998876 444554 667888889999999999999999887 3344 56788888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 660 AAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 660 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999888999999999999999999999988765
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=4.7e-12 Score=125.42 Aligned_cols=197 Identities=15% Similarity=0.076 Sum_probs=166.6
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 580 (844)
.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 356677788888999999999999998765 44677888899999999999999999999988 4564 46788888
Q ss_pred HHHhcc-CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC
Q 003148 581 TACSHG-GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN 656 (844)
Q Consensus 581 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 656 (844)
..+... |++++|..+++++.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 889999 999999999999887 434444 567888899999999999999999887 4444 46788888889999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 657 VDIAAYAAERITELDP-EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88888888999999999999999999888754
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=1.5e-12 Score=130.89 Aligned_cols=196 Identities=11% Similarity=0.083 Sum_probs=146.9
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 580 (844)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence 345566677778888899999998888775 34577888888899999999999999999888 4554 46777888
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 658 (844)
..+...|++++|.++++++.+.. +.+...+..++..|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 88899999999999999988722 224667888889999999999999999887 3334 5678888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999889999999999999999999999988764
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3.6e-12 Score=122.15 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=138.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGC 614 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 614 (844)
+...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...+..... ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 456788888888888999999999998888 67766 5778888888889999999999988877 3344 556777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
+...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788888999999999998887 4445 56688888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 003148 693 NVARVRLQMKEQ 704 (844)
Q Consensus 693 ~a~~~~~~m~~~ 704 (844)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=4.3e-12 Score=136.01 Aligned_cols=223 Identities=9% Similarity=0.030 Sum_probs=188.6
Q ss_pred hHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCC-HHHHHHHHHhcC---CCCHhHHHHHHHHHH
Q 003148 474 TMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGD-PQRAMQVFRRME---KRDVSAWTAAIGAMA 549 (844)
Q Consensus 474 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~ 549 (844)
.+..+..++...|+.++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|+++. ..+...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34445555667788888888888888765 3467788889999999997 999999999887 457889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh-cCChH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGR-AGLLG 626 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~g~~~ 626 (844)
..|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..++++++ +.|+ ...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 78876 6888999999999999999999999998 5666 7789999999999 66668
Q ss_pred HH-----HHHHHhC-CCCC-ChHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC--------
Q 003148 627 EA-----LDLIKSM-PVEP-NDVIWGSLLAACQKHQ--NVDIAAYAAERITELDPEKSGVHVLLSNIYASAG-------- 689 (844)
Q Consensus 627 eA-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 689 (844)
+| ++.++++ .+.| +...|..+...+...| ++++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4777776 5566 5679999999998888 689999999998 999999999999999999875
Q ss_pred -CchHHHHHHHHH-Hh
Q 003148 690 -KWTNVARVRLQM-KE 703 (844)
Q Consensus 690 -~~~~a~~~~~~m-~~ 703 (844)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=1.3e-11 Score=136.47 Aligned_cols=343 Identities=9% Similarity=-0.029 Sum_probs=204.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCC
Q 003148 311 IMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGK 390 (844)
Q Consensus 311 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 390 (844)
+...+.+.|++++|+++|++..+.|- ++. + ..|..+|...|+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A--~-----------------------------------~~Lg~~y~~~g~ 50 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEA--Q-----------------------------------VGLADIQVGTRD 50 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTG--G-----------------------------------GTCC--------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHH--H-----------------------------------HHHHHHHHccCC
Confidence 45566777788888888877766652 221 1 122233333444
Q ss_pred H---HHHHHHHhhcCCCCcchHHHHHHHHHhcC-----CHHHHHHHHhhCCCC-CccccccccccccccCCh---HHHHH
Q 003148 391 Q---EMACRIFDHMSNKTVVSWNSLIAGLIKNG-----DVESAREVFSEMPGR-DHISWNTMLGGLTQENMF---EEAME 458 (844)
Q Consensus 391 ~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~ 458 (844)
. ++|...|++..+.++..+..+...+...+ +.++|.+.|++..++ +...+..+...|...+.. .++.+
T Consensus 51 ~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 51 PAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 4 55555555544444444444544333333 445555555544332 333444454444443332 23455
Q ss_pred HHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC---CHHHHHHHHHhcCC
Q 003148 459 LFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG---DPQRAMQVFRRMEK 535 (844)
Q Consensus 459 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~~~~ 535 (844)
.+.+....|. ......+...+...+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|+...+
T Consensus 131 ~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 131 QISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 5555444432 23333344444444433333332222222222334447778888999999 88999999987763
Q ss_pred ---CCHhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhHHHHHHHH-H--hccCcHHHHHHHHHHhHhhcCC
Q 003148 536 ---RDVSAWTAAIGAMAME----GNGEQAVELFNEMLRQGIKPDSIVFVGVLTA-C--SHGGLVNQGWHLFRSMTDIHGV 605 (844)
Q Consensus 536 ---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~ 605 (844)
++...+..|...|... ++.++|++.|++.. .| +...+..+... + ...|+.++|..+|++..+ .|
T Consensus 208 ~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g- 281 (452)
T 3e4b_A 208 RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD- 281 (452)
T ss_dssp TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC-
Confidence 3444456777777554 68999999999986 22 33555556555 3 468899999999999887 33
Q ss_pred CCCcchHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCc
Q 003148 606 SPQIVHYGCMVDLLGRAG-----LLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 606 ~p~~~~~~~li~~~~~~g-----~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
+...+..|..+|. .| ++++|.+.|++.- .-+...+..|...|.. ..|.++|...++++.+ +.++.
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~ 355 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNS 355 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTT
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHH
Confidence 5667777888887 55 9999999999987 5567777777766655 3499999999999987 45677
Q ss_pred hHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 003148 677 VHVLLSNIYAS----AGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 677 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 706 (844)
....|+.+|.. ..+.++|..++++..+.|.
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 89999999985 4589999999999988774
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1.4e-12 Score=145.42 Aligned_cols=192 Identities=10% Similarity=0.004 Sum_probs=170.2
Q ss_pred CchhHHhHHhhhHHhcCCH-HHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 003148 505 CDMQLATALVDMFARCGDP-QRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVL 580 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 580 (844)
.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|.+.|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4667777888888889999 99999998775 34578999999999999999999999999999 678888888899
Q ss_pred HHHhcc---------CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC--
Q 003148 581 TACSHG---------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA--------GLLGEALDLIKSM-PVEP-- 639 (844)
Q Consensus 581 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~~~~~m-~~~p-- 639 (844)
.++... |++++|...|+++.+ +.|+ ...|..+..+|... |++++|++.|+++ ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 999999999999988 4565 77888999999998 9999999999998 5556
Q ss_pred --ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 640 --NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 640 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
+...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999999999999999999999999999999999999999999999998765443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=2.8e-12 Score=137.44 Aligned_cols=241 Identities=12% Similarity=0.090 Sum_probs=192.4
Q ss_pred ccccccccccccCChHHHHHHHHHHHhCCcccC-hhhHHhHHHHccccCc-hHHHHHHHHHHHHhCCCCchhHHhHHhhh
Q 003148 439 SWNTMLGGLTQENMFEEAMELFRVMLSERIKVD-RVTMVGVASACGYLGA-LDLAKWIYAYIEKNGIHCDMQLATALVDM 516 (844)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (844)
.|+.+...+.+.|++++|+..|++.+.. .|+ ...+..+..++...|+ +++|...+..+++... .+..+|+.+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 4555566666777777888887777663 453 3455566666677775 8888888888777653 367788888999
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc-cCcHHH
Q 003148 517 FARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH-GGLVNQ 591 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~~~~ 591 (844)
|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++ +.|+. ..|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999877 45788999999999999999999999999999 77876 678888888888 666577
Q ss_pred H-----HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC--ChHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcC-------
Q 003148 592 G-----WHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG--LLGEALDLIKSMPVEPN-DVIWGSLLAACQKHQ------- 655 (844)
Q Consensus 592 a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g------- 655 (844)
| +..++++.+ +.|+ ...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888887 6676 678888999999988 68999999988855664 567888888887764
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHH
Q 003148 656 -N-VDIAAYAAERI-TELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 656 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 687 (844)
+ +++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 99999998899888776643
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=1.9e-11 Score=123.65 Aligned_cols=198 Identities=15% Similarity=0.035 Sum_probs=155.6
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG 554 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 554 (844)
+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 3334444455555555555554443 2345667778888888999999999888765 34677888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHH
Q 003148 555 EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLI 632 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~ 632 (844)
++|++.|+++.+.+..|+. ..+..+...+...|++++|..+++++.+ ..|+ ...+..++.+|.+.|++++|.+.+
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999875456655 6778888889999999999999999987 3344 677889999999999999999999
Q ss_pred HhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 633 KSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 633 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
+++ ...| +...|..+...+...|+.++|...++++++..|+++....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 987 4445 5667888888899999999999999999999999875543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=3.3e-12 Score=128.38 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=149.9
Q ss_pred CccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhh
Q 003148 436 DHISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVD 515 (844)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (844)
....|..+...+...|++++|+..|+++.+. .| .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3456777777777888888888888777653 22 23445556667
Q ss_pred hHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHH
Q 003148 516 MFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQ 591 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 591 (844)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHH
Confidence 7777888888888887665 34677888888889999999999999999888 4454 4677788888899999999
Q ss_pred HHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
|..+++++.+ ..| +...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...+++++
T Consensus 144 A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVE---LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999887 334 4667888999999999999999999887 3334 56789999999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHH
Q 003148 669 ELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~ 687 (844)
+++|+++..+..++.+...
T Consensus 221 ~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHCTTCHHHHHHHTC----
T ss_pred ccCcchHHHHHHHHHHHhh
Confidence 9999998877776655443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=5.7e-11 Score=121.89 Aligned_cols=214 Identities=9% Similarity=-0.071 Sum_probs=158.8
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh----cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh----
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR----CGDPQRAMQVFRRME-KRDVSAWTAAIGAMAM---- 550 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---- 550 (844)
..+...+++++|...+....+. .+...+..+..+|.. .|++++|...|++.. ..+...|..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3334444555555555554442 233455556667777 788888888887765 3366777778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----c
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSH----GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----A 622 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~ 622 (844)
.+++++|++.|++..+.+ +...+..+...|.. .|++++|..+|++..+ .+ +...+..+..+|.+ .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCC
Confidence 888888888888888754 56677777778877 8888888888888877 22 45567777888887 8
Q ss_pred CChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHH
Q 003148 623 GLLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS----AGKWTNV 694 (844)
Q Consensus 623 g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a 694 (844)
+++++|.+.+++.--..+...+..+...+.. .+++++|...++++++.+| +..+..|+.+|.. .|++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 8889998888877212356677778888888 8899999999999998876 5678889999998 8999999
Q ss_pred HHHHHHHHhCC
Q 003148 695 ARVRLQMKEQG 705 (844)
Q Consensus 695 ~~~~~~m~~~~ 705 (844)
.+.+++..+.+
T Consensus 242 ~~~~~~a~~~~ 252 (273)
T 1ouv_A 242 IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99998887765
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=1.5e-11 Score=135.93 Aligned_cols=368 Identities=11% Similarity=0.062 Sum_probs=181.0
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCH---HHHHHHHHhcCCCCceehHHHHHHHHHcC-----
Q 003148 248 ACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAV---DTAKQLFGECKDRNLVLCNTIMSNYVRLG----- 319 (844)
Q Consensus 248 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g----- 319 (844)
.+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|.+.|++..+.+...+..+...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344555566666666555554 222333445555556666 77888887776666666777766555554
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhH---HHHHHHHHHhCCCchhhHHHHHHHHHHHcCC----HH
Q 003148 320 LAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCG---RMCHGYVLRNGLEGWDSICNTMIDMYMKCGK----QE 392 (844)
Q Consensus 320 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a---~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~----~~ 392 (844)
++++|++.|++..+.|... .+..+-..+...+..+.+ .+.+......| ++.....|..+|...+. .+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 6678888888877765432 333333444333332222 22222222222 23334445555555542 23
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccC---ChHHHHHHHHHHHhCCcc
Q 003148 393 MACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQEN---MFEEAMELFRVMLSERIK 469 (844)
Q Consensus 393 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~ 469 (844)
.+..+++.... .++..+..+...|...| +.++|++.|++..+.|..
T Consensus 163 ~a~~~~~~a~~-------------------------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 163 DVERICKAALN-------------------------------TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHHHHHHTT-------------------------------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHc-------------------------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 33333333333 33334444444455555 556666666666555411
Q ss_pred cChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhc----CCHHHHHHHHHhcCCCCHhHHHHHH
Q 003148 470 VDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARC----GDPQRAMQVFRRMEKRDVSAWTAAI 545 (844)
Q Consensus 470 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~----g~~~~A~~~~~~~~~~~~~~~~~li 545 (844)
+...+..|..+|... ++.++|...|+.....+...+..|.
T Consensus 212 ------------------------------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg 255 (452)
T 3e4b_A 212 ------------------------------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLA 255 (452)
T ss_dssp ------------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112112233333322 5666677766665533455666665
Q ss_pred HH-H--HhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC-----cHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 546 GA-M--AMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG-----LVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 546 ~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
.. | ...++.++|++.|++..+.| +...+..+...|. .| ++++|..+|++.. .-+...+..|..
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 55 3 34677777777777777755 4455555555555 44 7778888777654 233555666666
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH--
Q 003148 618 LLGR----AGLLGEALDLIKSMPVEPNDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS-- 687 (844)
Q Consensus 618 ~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 687 (844)
+|.. ..+.++|.+.|++.--.-+......|...|.. ..|.++|...++++.+..+.. ....+..+...
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLT 404 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCC
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCC
Confidence 6655 33778888888776222234445555555543 457888888888888766533 33344443322
Q ss_pred cCCchHHHHHHHHHH
Q 003148 688 AGKWTNVARVRLQMK 702 (844)
Q Consensus 688 ~g~~~~a~~~~~~m~ 702 (844)
.++.++|.++.+.-+
T Consensus 405 ~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 405 PAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 234445555544433
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=7.8e-12 Score=128.30 Aligned_cols=218 Identities=12% Similarity=0.015 Sum_probs=181.9
Q ss_pred ccccCchHHHHHHHHHHHHhCC---CCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 003148 482 CGYLGALDLAKWIYAYIEKNGI---HCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE 555 (844)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 555 (844)
....+++++|...+..+.+... +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999987642 2256788889999999999999999999876 456889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 556 QAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
+|++.|+++++ ..|+ ...+..+...+...|++++|..+|+++.+ +.|+..........+.+.|++++|...+++
T Consensus 95 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999 5665 47888999999999999999999999988 557655555566677888999999999977
Q ss_pred C-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 635 M-P-VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPE----KSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 635 m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
. . .+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 6 2 233444454 677778888899999999999987764 36788999999999999999999999998753
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=2.7e-11 Score=119.83 Aligned_cols=203 Identities=11% Similarity=-0.010 Sum_probs=157.4
Q ss_pred HHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc
Q 003148 475 MVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAME 551 (844)
Q Consensus 475 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 551 (844)
+..+...+...|+++.|...+..+.+.. +.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3334444445555555555555555443 2345567778888888999999999888765 44677888899999999
Q ss_pred -CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHH
Q 003148 552 -GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 552 -g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 628 (844)
|++++|+..|+++.+.+..|+. ..+..+..++...|++++|..+++++.+ ..|+ ...+..++..|.+.|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHH
Confidence 9999999999999984445554 6788888899999999999999999987 3444 67788899999999999999
Q ss_pred HHHHHhC-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 629 LDLIKSM-PVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 629 ~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
.+.++++ ...| +...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999987 3334 566777777778899999999999999999999987665544
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=4.7e-12 Score=146.64 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=144.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGC 614 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 614 (844)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 356788888899999999999999999998 77876 6788888999999999999999999988 5676 678889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
+..+|.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999987 66674 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003148 693 NVARVRLQMKE 703 (844)
Q Consensus 693 ~a~~~~~~m~~ 703 (844)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.36 E-value=9.9e-12 Score=122.69 Aligned_cols=182 Identities=16% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc-----
Q 003148 480 SACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAME----- 551 (844)
Q Consensus 480 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----- 551 (844)
..+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Confidence 33334444444444444443332 2245555666667777777777777777654 33556677777777777
Q ss_pred ------CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 003148 552 ------GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGL 624 (844)
Q Consensus 552 ------g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 624 (844)
|++++|+..|++.++ +.|+. ..+..+..++...|++++|+..|+++.+. . .+...+..+..+|...|+
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTC
T ss_pred hhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCC
Confidence 888888888888887 66765 56777777888888888888888888773 2 556777788888888888
Q ss_pred hHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 625 LGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+++|.+.+++. ...| +...|..+...+...|++++|...+++.
T Consensus 167 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888877 4445 4567777777888888888888777664
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=1.3e-11 Score=118.21 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=145.4
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+..+|..+...|.+.|++++|++.|++.. +.+...|..+...|.+.|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56788999999999999999999999876 45778999999999999999999999999988 56665 56777777
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 658 (844)
.+...++++++...+.+..+ +.|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88899999999999999987 4454 677889999999999999999999988 5556 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 003148 659 IAAYAAERITELDPEKS 675 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~ 675 (844)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999763
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=4.5e-11 Score=122.44 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=163.3
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--IVFVGVLTAC 583 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~ 583 (844)
........|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++.++.+..|+. ..|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34456677889999999999999876 345668999999999999999999999999984433332 3478888999
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 660 (844)
...|++++|..+|+++.+ ..|+ ...|..+...|...|++++|.+.+++. ...|+ ..+|..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 4454 678999999999999999999999998 56664 55777776466666799999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCC---chHHHHHHHHHHhC
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASAGK---WTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 704 (844)
...+++++++.|+++..+..++.++...|+ +++|...++++.+.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999888764
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=2.7e-12 Score=140.57 Aligned_cols=258 Identities=13% Similarity=0.011 Sum_probs=177.1
Q ss_pred ccccccCChHHHHHHHHHHHhCCcccCh-----hhHHhHHHHccccCchHHHHHHHHHHHHh----CC-CCchhHHhHHh
Q 003148 445 GGLTQENMFEEAMELFRVMLSERIKVDR-----VTMVGVASACGYLGALDLAKWIYAYIEKN----GI-HCDMQLATALV 514 (844)
Q Consensus 445 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li 514 (844)
..+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +. .....++..+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 3344445555555555555443 2221 23344444455555555555555544332 11 22345666777
Q ss_pred hhHHhcCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC-
Q 003148 515 DMFARCGDPQRAMQVFRRMEKR---------DVSAWTAAIGAMAMEGN-----------------GEQAVELFNEMLRQ- 567 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~- 567 (844)
..|...|++++|...|++..+. ....|..+...|...|+ +++|++.+++.++.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765521 23467778888888888 88888888876552
Q ss_pred ---CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 003148 568 ---GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVE 638 (844)
Q Consensus 568 ---g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~ 638 (844)
+-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|.+.++++ ...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 112222 46777888899999999999999988763211112 237788899999999999999999876 111
Q ss_pred ---CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 639 ---PN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 639 ---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.+ ..+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 4577888889999999999999999999875543 347889999999999999999999988764
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.33 E-value=5.8e-11 Score=121.83 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=175.7
Q ss_pred ccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccc----cCchHHHHHHHHHHHHhCCCCchhHHhH
Q 003148 437 HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGY----LGALDLAKWIYAYIEKNGIHCDMQLATA 512 (844)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (844)
..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444555556666677777777777766522 33445555555556 777888888887777765 5667777
Q ss_pred HhhhHHh----cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 003148 513 LVDMFAR----CGDPQRAMQVFRRME-KRDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTAC 583 (844)
Q Consensus 513 li~~y~k----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 583 (844)
+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888888 999999999998776 3467788889999998 999999999999999865 456677777778
Q ss_pred hc----cCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHhC-CCCCChHHHHHHHHHHHh-
Q 003148 584 SH----GGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGR----AGLLGEALDLIKSM-PVEPNDVIWGSLLAACQK- 653 (844)
Q Consensus 584 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~- 653 (844)
.. .+++++|..+|++..+ . .+...+..+..+|.+ .+++++|.+.+++. ... +...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 77 8999999999999987 2 245677888999999 99999999999987 333 36678888888888
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCC
Q 003148 654 ---HQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 654 ---~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.++.++|...++++++++|+++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999998653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=135.23 Aligned_cols=260 Identities=14% Similarity=0.030 Sum_probs=179.5
Q ss_pred ccccccccCChHHHHHHHHHHHhCCcccCh-----hhHHhHHHHccccCchHHHHHHHHHHHHh----CCCC-chhHHhH
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSERIKVDR-----VTMVGVASACGYLGALDLAKWIYAYIEKN----GIHC-DMQLATA 512 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~ 512 (844)
....+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +..+ ...++..
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 344455555566666666555543 2221 23444445555566666666665544322 2111 2456667
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGN--------------------GEQAVELFNE 563 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~ 563 (844)
+...|...|++++|...|++..+ .+ ..+|..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 77888888888888888876652 22 3467788888888888 8888888887
Q ss_pred HHHC----CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHh
Q 003148 564 MLRQ----GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 564 m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~ 634 (844)
..+. +..|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6642 112222 46777888888999999999999988763222222 33778888999999999999999887
Q ss_pred C-CC---CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 635 M-PV---EPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 635 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
. .. .++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 112 4477888888999999999999999999875543 44778999999999999999999988
Q ss_pred HHhC
Q 003148 701 MKEQ 704 (844)
Q Consensus 701 m~~~ 704 (844)
..+.
T Consensus 333 al~~ 336 (406)
T 3sf4_A 333 HLEI 336 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=9.3e-12 Score=131.56 Aligned_cols=258 Identities=14% Similarity=0.040 Sum_probs=181.5
Q ss_pred ccccccCChHHHHHHHHHHHhCCcccCh-----hhHHhHHHHccccCchHHHHHHHHHHHHh----CCC-CchhHHhHHh
Q 003148 445 GGLTQENMFEEAMELFRVMLSERIKVDR-----VTMVGVASACGYLGALDLAKWIYAYIEKN----GIH-CDMQLATALV 514 (844)
Q Consensus 445 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~li 514 (844)
..+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +.. ....++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3444556666666666665553 2221 33444455555666666666666554322 211 1245667788
Q ss_pred hhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGN--------------------GEQAVELFNEML 565 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 565 (844)
..|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888889999999888877641 22 3377788888888898 899998888866
Q ss_pred HC----CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-
Q 003148 566 RQ----GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM- 635 (844)
Q Consensus 566 ~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m- 635 (844)
+. +..|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 212222 46777788889999999999999988763211122 337788899999999999999999876
Q ss_pred CC---CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 636 PV---EPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 636 ~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
.. .++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11 122 4577788888999999999999999999876543 3377899999999999999999999987
Q ss_pred hC
Q 003148 703 EQ 704 (844)
Q Consensus 703 ~~ 704 (844)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 64
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=5.2e-09 Score=119.64 Aligned_cols=215 Identities=9% Similarity=-0.020 Sum_probs=151.7
Q ss_pred HHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHH-HHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC
Q 003148 456 AMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAK-WIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME 534 (844)
Q Consensus 456 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 534 (844)
+..+|++.... ..-+...|.....-+...|+.+.|. .+++..+... +.+..++-..+..+.+.|+++.|.++|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555442 1113334444444445567777885 8888887653 4566777788888889999999999998776
Q ss_pred C-------------CC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhc-cC
Q 003148 535 K-------------RD------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ-GIKPDSIVFVGVLTACSH-GG 587 (844)
Q Consensus 535 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g 587 (844)
. |+ ...|...+....+.|..+.|..+|.+.++. +. +....|......-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 3 21 236888888888889999999999999885 21 122333332222223 35
Q ss_pred cHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC----ChHHHHHHHHHHHhcCCHHHHHH
Q 003148 588 LVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP----NDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 588 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
+.+.|..+|+...+.++ .+...+...++.....|+.+.|..+|++. ...| ....|..++..-.++|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999988533 33456678888888899999999999987 3333 23588888888889999999999
Q ss_pred HHHHHHhcCCCCC
Q 003148 663 AAERITELDPEKS 675 (844)
Q Consensus 663 ~~~~~~~~~p~~~ 675 (844)
+.+++.+..|+++
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999999999875
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=6.6e-11 Score=131.73 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=158.2
Q ss_pred CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHH
Q 003148 522 DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNG-EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.+++|...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+. ..+..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666554 34678899999999999999 999999999999 67775 78899999999999999999999
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc--------CCH
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRA---------GLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH--------QNV 657 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~ 657 (844)
+++.+ +.|+...+..+..+|... |++++|++.++++ ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99988 668888889999999999 9999999999998 5556 577899999999888 999
Q ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 658 DIAAYAAERITELDP---EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 658 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998764
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=134.38 Aligned_cols=290 Identities=14% Similarity=0.006 Sum_probs=189.3
Q ss_pred chhhHHHHHHHHHHHcCCHHHHHHHHhhcCC--C-C----cchHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----C
Q 003148 373 GWDSICNTMIDMYMKCGKQEMACRIFDHMSN--K-T----VVSWNSLIAGLIKNGDVESAREVFSEMPG-----R----D 436 (844)
Q Consensus 373 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~----~ 436 (844)
.....+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556677788888888888888887653 2 2 23455666666666666666666554321 0 1
Q ss_pred ccccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCC-CCchhHHhHHhh
Q 003148 437 HISWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGI-HCDMQLATALVD 515 (844)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~ 515 (844)
...|..+...|...|++++|+..+++..... | +.+- .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--R-----------------------------ELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-----------------------------hcccccchHHHHHHHHH
Confidence 2234444445555555555555555443310 0 0010 001335556666
Q ss_pred hHHhcCC--------------------HHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003148 516 MFARCGD--------------------PQRAMQVFRRMEK-----R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLR 566 (844)
Q Consensus 516 ~y~k~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 566 (844)
.|...|+ +++|.+.|++... . ....|..+...|...|++++|+..|++.++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777777 7777777665431 1 134677788888889999999999988775
Q ss_pred CCC-CCC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-C
Q 003148 567 QGI-KPD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-P 636 (844)
Q Consensus 567 ~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 636 (844)
... .++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.++++ .
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 122 136778888889999999999999988763211111 457778899999999999999998876 1
Q ss_pred ---CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchH
Q 003148 637 ---VEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE------KSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 637 ---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 693 (844)
..++ ..+|..+...+...|++++|...+++++++.+. ...++..++.+|...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 457888888899999999999999999986432 24567788888888887643
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=5.1e-10 Score=117.03 Aligned_cols=215 Identities=13% Similarity=0.046 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhCCcccC-hhhHHhHHHHcc-------ccCch-------HHHHHHHHHHHHhCCCCchhHHhHHhhhHH
Q 003148 454 EEAMELFRVMLSERIKVD-RVTMVGVASACG-------YLGAL-------DLAKWIYAYIEKNGIHCDMQLATALVDMFA 518 (844)
Q Consensus 454 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (844)
++|+..|++.... .|+ ...|......+. ..|++ ++|..+++..++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5777777777663 343 334444433332 23554 677777777766322335567777777777
Q ss_pred hcCCHHHHHHHHHhcCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHH-hccCcHHHH
Q 003148 519 RCGDPQRAMQVFRRMEK--R-DVS-AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTAC-SHGGLVNQG 592 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~-~~~g~~~~a 592 (844)
+.|++++|..+|++..+ | +.. .|..++..+.+.|+.++|..+|++.++ ..|+. ..|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888877652 2 233 677777777778888888888888777 33443 3343333332 235788888
Q ss_pred HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003148 593 WHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-P---VEP--NDVIWGSLLAACQKHQNVDIAAYAAE 665 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 665 (844)
..+|+++.+. .|+ ...|..+++.+.+.|+.++|..+|+++ . +.| ....|..++.....+|+.+.|..+++
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888877763 233 566777777777788888888887776 2 344 24577777777777788888888888
Q ss_pred HHHhcCCCCC
Q 003148 666 RITELDPEKS 675 (844)
Q Consensus 666 ~~~~~~p~~~ 675 (844)
++++..|+++
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 8888777654
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.22 E-value=2.1e-11 Score=133.46 Aligned_cols=268 Identities=13% Similarity=0.023 Sum_probs=177.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhcCC--CC-c----chHHHHHHHHHhcCCHHHHHHHHhhCCCC---------Ccc
Q 003148 375 DSICNTMIDMYMKCGKQEMACRIFDHMSN--KT-V----VSWNSLIAGLIKNGDVESAREVFSEMPGR---------DHI 438 (844)
Q Consensus 375 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~ 438 (844)
...+..+...|...|++++|...|++..+ |+ . ..|..+...|...|++++|.+.|++..+. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455667778888999999888887654 22 2 35666666666667766666666543220 122
Q ss_pred ccccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhC-CCCchhHHhHHhhhH
Q 003148 439 SWNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNG-IHCDMQLATALVDMF 517 (844)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y 517 (844)
.|..+...|...|++++|+..|++..... .+.+ ......++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHH
Confidence 34444444445555555555544443210 0001 111234566677777
Q ss_pred HhcCC-----------------HHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-C
Q 003148 518 ARCGD-----------------PQRAMQVFRRMEK-----R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI-K 570 (844)
Q Consensus 518 ~k~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 570 (844)
...|+ +++|.+.|++..+ . ....|..+...|...|++++|+..|++.++... .
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 77777 7777777766431 1 234677888889999999999999998876211 0
Q ss_pred CC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CC---C
Q 003148 571 PD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PV---E 638 (844)
Q Consensus 571 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~ 638 (844)
++ ..++..+...+...|++++|..++++..+...-..+ ...+..+..+|.+.|++++|.+.+++. .. .
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 136778888999999999999999988763211111 457788899999999999999999887 11 1
Q ss_pred CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 639 PN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 639 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
++ ..++..+...+...|+.++|...+++++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 12 347778888899999999999999999988763
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=5.7e-10 Score=116.65 Aligned_cols=211 Identities=10% Similarity=0.044 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHhhhHH-------hcCCH-------HHHHHHHHhcCC----CCHhHHHHHHHHHHh
Q 003148 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFA-------RCGDP-------QRAMQVFRRMEK----RDVSAWTAAIGAMAM 550 (844)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~-------k~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 550 (844)
+.+..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887754 446777777777765 35886 899999997653 356789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH-hcCChH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSI--VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLG-RAGLLG 626 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~-~~g~~~ 626 (844)
.|++++|.++|+++++ +.|+.. .|..+...+.+.|++++|..+|+++.+ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999 778753 788899999999999999999999987 3444 444544443322 369999
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITEL---DPE-KSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
+|.++|+++ ...| +...|..++..+...|+.++|..+++++++. .|+ ....|..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 3334 5779999999999999999999999999995 554 566888899999999999999999999
Q ss_pred HHhCC
Q 003148 701 MKEQG 705 (844)
Q Consensus 701 m~~~~ 705 (844)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88753
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.3e-10 Score=113.71 Aligned_cols=187 Identities=11% Similarity=-0.022 Sum_probs=103.3
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---K-RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVL 580 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 580 (844)
|+..+..+...|.+.|++++|...|+... . ++...|..+...+...|++++|++.|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555566666666666666666544 2 4555555566666666666666666666665 45554 4455555
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCC-c-------chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHH
Q 003148 581 TACSHGGLVNQGWHLFRSMTDIHGVSPQ-I-------VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLL 648 (844)
Q Consensus 581 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll 648 (844)
.++...|++++|...+++..+ +.|+ . ..|..+...+.+.|++++|++.++++ ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 566666666666666666655 2333 2 23555555556666666666666555 44454 23444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 649 AACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 649 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+.. .+...++++..+.+.++..|. .......|.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44432 233444555555544433332 22233445558888888887764
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=2e-10 Score=109.45 Aligned_cols=159 Identities=18% Similarity=0.102 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDL 618 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 618 (844)
|..+...+...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|..+++++.+ ..| +...+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHH
Confidence 33444444455555555555555444 2232 23444455555555555555555555554 122 24455556666
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 003148 619 LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
|...|++++|.+.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666655 2222 456777777778888888888888888888888887888888888888888888888
Q ss_pred HHHHHHhC
Q 003148 697 VRLQMKEQ 704 (844)
Q Consensus 697 ~~~~m~~~ 704 (844)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88777653
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=3.5e-10 Score=112.47 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=159.7
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGA 547 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 547 (844)
|...+......+...|++++|...+..+++....++...+..+...|.+.|++++|.+.|++.. ..+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4566777777888999999999999999998764677777779999999999999999999876 3356789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChh--------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDSI--------VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMV 616 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 616 (844)
|...|++++|+..|++.++ ..|+.. .|..+...+...|++++|.+.|+++.+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999999 667643 467777788899999999999999987 5665 56777888
Q ss_pred HHHHhcCCh--HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 617 DLLGRAGLL--GEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 617 ~~~~~~g~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
.+|...|+. ++|..+. ..+...+..+. ....+++++|...++++++++|+++.+...++.+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766643 3322221 12333343332 34557789999999999999999988777776654
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=2.3e-08 Score=114.38 Aligned_cols=450 Identities=9% Similarity=0.017 Sum_probs=201.1
Q ss_pred hHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC---hHHHHHH
Q 003148 84 TYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSA---FGEGVQV 160 (844)
Q Consensus 84 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~ 160 (844)
.+.+..|+..+ .-.+.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+..+
T Consensus 49 ~d~i~~lE~~l--~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMI--EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHH--HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34444444433 122357777777777777777777777777777664 23333445555555556666 7777777
Q ss_pred HHHHHHhC-CCCChhHHHHHHHHHHhcCCh--------HHHHHHHhhcC------CC-CcccHHHHHHHHHh--------
Q 003148 161 HGAIVKMG-FDRDVFVENCLINFYGECGDI--------VDGRRVFDEMS------ER-NVVSWTSLICACAR-------- 216 (844)
Q Consensus 161 ~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~-------- 216 (844)
|++.+... .+|++..|...+....+.++. +..+++|+... .+ +...|...+.-...
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777654 135666666666555444443 22335665421 12 22345555543321
Q ss_pred -CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHH
Q 003148 217 -RDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAK---LQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDT 292 (844)
Q Consensus 217 -~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 292 (844)
+++.+.+..+|.+.+. + |... +..+-..|.. .-+...+..++... ..+++.
T Consensus 206 eq~~~~~~R~iy~raL~--i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLC--Q-PMDC-LESMWQRYTQWEQDVNQLTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTT--S-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHH---------------------HHHHHH
T ss_pred HHhHHHHHHHHHHHHHh--C-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHh---------------------hHHHHH
Confidence 2234455566666553 1 2111 1111111110 00011111111110 012233
Q ss_pred HHHHHHhc-------CC--C--------------C------ceehHHHHHHHHHcC-------ChHHHHHHHHHHHhcCC
Q 003148 293 AKQLFGEC-------KD--R--------------N------LVLCNTIMSNYVRLG-------LAREALAILDEMLLHGP 336 (844)
Q Consensus 293 A~~~f~~m-------~~--~--------------~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~ 336 (844)
|+..+.++ .. | + +..|...+.---.++ ..+.+..+|++.+..-
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 33333321 10 0 0 012333333222222 1123344555555431
Q ss_pred CCChhhHHHHHHHHhhcCChhhHH-HHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHH
Q 003148 337 RPDRVTMLSAVSASAQLGDLLCGR-MCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAG 415 (844)
Q Consensus 337 ~p~~~t~~~ll~~~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 415 (844)
.-+...|.....-+...|+.+.|. .++...+.. ++.+..++-.++..+.+.|+++.|+.+|+.+...-...+..+-.
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~- 417 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME- 417 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 123334444444445555666664 666666543 23344455556666666666666666666543200000000000
Q ss_pred HHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHHhC-Cc-ccChhhHHhHHHHccccCchHHHHH
Q 003148 416 LIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVMLSE-RI-KVDRVTMVGVASACGYLGALDLAKW 493 (844)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~ 493 (844)
.....+... +.........|...+....+.|..+.|..+|.+..+. +. .+........+.-. ..++.+.|+.
T Consensus 418 --~~p~~~~~~---~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ 491 (679)
T 4e6h_A 418 --DDPTNESAI---NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACK 491 (679)
T ss_dssp --HSTTCHHHH---HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHH
T ss_pred --ccCcchhhh---hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHH
Confidence 000000000 0000001123444444444555566666666665543 11 11111111111111 1234566666
Q ss_pred HHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 494 IYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR------DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 494 i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+++..++. ++.+...+...++.....|+.+.|..+|++.... ....|...+.--.++|+.+.+.++.+++.+
T Consensus 492 ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~- 569 (679)
T 4e6h_A 492 VLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE- 569 (679)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-
T ss_pred HHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 66666554 3334555556666666666666666666665532 124566666666666666666666666666
Q ss_pred CCCCCh
Q 003148 568 GIKPDS 573 (844)
Q Consensus 568 g~~p~~ 573 (844)
..|+.
T Consensus 570 -~~P~~ 574 (679)
T 4e6h_A 570 -KFPEV 574 (679)
T ss_dssp -HSTTC
T ss_pred -hCCCC
Confidence 34444
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=122.23 Aligned_cols=232 Identities=12% Similarity=0.083 Sum_probs=162.0
Q ss_pred hhhHHhHHHHccccCchHHHHHHHHHHHHh-------CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C-
Q 003148 472 RVTMVGVASACGYLGALDLAKWIYAYIEKN-------GIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-------R- 536 (844)
Q Consensus 472 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~- 536 (844)
..++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777788889999999998887764 3344566778888899999999999998887652 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc---
Q 003148 537 ---DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ------GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH--- 603 (844)
Q Consensus 537 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 603 (844)
....|..+...|...|++++|++.|+++++. +-.|+. ..+..+...+...|++++|.++++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2456788888899999999999999988874 223433 567778888889999999999999887731
Q ss_pred --CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-hHHHHH------HHHHHHhcCCHHHHHHH
Q 003148 604 --GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-P---------VEPN-DVIWGS------LLAACQKHQNVDIAAYA 663 (844)
Q Consensus 604 --~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~---------~~p~-~~~~~~------ll~~~~~~g~~~~a~~~ 663 (844)
+..|. ...+..+..+|.+.|++++|.+.++++ . ..|. ...|.. +...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11333 456778888999999999999988776 1 1121 112222 22233344556666677
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 664 AERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 664 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
++++....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788778888888999999999999999999999988765
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=9e-11 Score=123.88 Aligned_cols=266 Identities=14% Similarity=0.025 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCC--CC-----cchHHHHHHHHHhcCCHHHHHHHHhhCCCC---------Ccccc
Q 003148 377 ICNTMIDMYMKCGKQEMACRIFDHMSN--KT-----VVSWNSLIAGLIKNGDVESAREVFSEMPGR---------DHISW 440 (844)
Q Consensus 377 ~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~ 440 (844)
.+......+.+.|++++|...|++..+ |+ ...+..+...|...|++++|.+.+++.... ....|
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344556677888888888888887653 22 234556666666666666666666543220 12234
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCC-CchhHHhHHhhhHHh
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIH-CDMQLATALVDMFAR 519 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k 519 (844)
..+...|...|++++|+..+++..+.. .+.+-. ....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDIS-------------------------------RELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-------------------------------HHhcCchHHHHHHHHHHHHHHH
Confidence 444444555555555555554443210 000100 012345556666666
Q ss_pred cCC--------------------HHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-
Q 003148 520 CGD--------------------PQRAMQVFRRMEK-----R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI- 569 (844)
Q Consensus 520 ~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 569 (844)
.|+ +++|.+.+++... . ....|..+...|...|++++|+..+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 676 7777766665431 1 134677778888888899999888888765210
Q ss_pred CCC----hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CC---
Q 003148 570 KPD----SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PV--- 637 (844)
Q Consensus 570 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~--- 637 (844)
.++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.++++ ..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 111 136777778888899999999999887763211112 456778888999999999999998876 11
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 638 EPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 638 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
.++ ..+|..+...+...|++++|...+++++++.++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 112 347778888899999999999999999988764
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=125.77 Aligned_cols=234 Identities=11% Similarity=0.032 Sum_probs=142.6
Q ss_pred cccccccccccCChHHHHHHHHHHHhC-------CcccChhhHHhHHHHccccCchHHHHHHHHHHHHh------C-CCC
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSE-------RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKN------G-IHC 505 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g-~~~ 505 (844)
|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. + .+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 334444444444444444444444331 11112234444555555566666666666555443 1 122
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEK-------R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ------G 568 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 568 (844)
...++..+...|...|++++|...|++..+ + ....|..+...|...|++++|++.|+++++. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456677788888888888888888877652 1 2356788888899999999999999998873 2
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc------CCCCCcc-hH------HHHHHHHHhcCChHHHHHHHHh
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH------GVSPQIV-HY------GCMVDLLGRAGLLGEALDLIKS 634 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~-~~------~~li~~~~~~g~~~eA~~~~~~ 634 (844)
..|+. .++..+...+...|++++|..+++++.+.. ...+... .+ ..+...+...+.+.+|...+++
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 24443 467788889999999999999999987621 1222222 22 2223334455566666667766
Q ss_pred C-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 635 M-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 635 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
. ...| +..+|..+...+...|++++|...+++++++.|+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6 2334 3558889999999999999999999999998875
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=1.2e-09 Score=104.05 Aligned_cols=167 Identities=16% Similarity=0.058 Sum_probs=142.8
Q ss_pred hhHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 003148 507 MQLATALVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTA 582 (844)
Q Consensus 507 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 582 (844)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+ ..|+ ...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 34566678889999999999999998873 4677899999999999999999999999998 4565 4678888889
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 660 (844)
+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999883 2234677888999999999999999999987 3334 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCch
Q 003148 661 AYAAERITELDPEKSGV 677 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~ 677 (844)
...+++++++.|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999999987643
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=2.4e-10 Score=123.72 Aligned_cols=220 Identities=8% Similarity=0.005 Sum_probs=143.7
Q ss_pred cccCchHHHHHHHHHHHHh----CCCC-chhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----HhHHHHHHHH
Q 003148 483 GYLGALDLAKWIYAYIEKN----GIHC-DMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD-----VSAWTAAIGA 547 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 547 (844)
...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+...
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3445555555555554432 1111 234566677777777887777777766541 11 2467777788
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIK-PDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~ 618 (844)
|...|++++|++.|++.++.... ++. .++..+...|...|++++|..++++..+.. +..|. ...+..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 88888888888888887652111 111 367777788888888888888888876621 22133 5567778888
Q ss_pred HHhcCChHHHHHHHHhC-CC-----CCC-hHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 619 LGRAGLLGEALDLIKSM-PV-----EPN-DVIWGSLLAACQKHQN---VDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|...+++. ...|.....+..|+.+|...
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 121 2234556666777777 66666666665 33334445777889999999
Q ss_pred CCchHHHHHHHHHHh
Q 003148 689 GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 g~~~~a~~~~~~m~~ 703 (844)
|++++|.+.+++..+
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888765
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=2.9e-10 Score=131.60 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=146.2
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+...++.|...|.+.|++++|++.|++.. ..+...|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56788899999999999999999999876 44678999999999999999999999999999 78886 68999999
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 658 (844)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.|+++ .+.|+ ...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988 6676 778999999999999999999999998 66775 668999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 003148 659 IAAYAAERITELDPE 673 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~ 673 (844)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999886553
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=2.6e-09 Score=115.57 Aligned_cols=165 Identities=9% Similarity=0.058 Sum_probs=126.2
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh-
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPDS- 573 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~- 573 (844)
.+++.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++.++. +..|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3556677778888888888888776551 12 246788888999999999999999988762 332444
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCh-HHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGRAGL---LGEALDLIKSMPVEPND-VIWGS 646 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~m~~~p~~-~~~~~ 646 (844)
.++..+...+...|++++|..++++..+...-..+ ...+..+..+|...|+ +++|+.++++.+..|+. ..+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 67888888999999999999999988763211112 3346678888999999 99999999999655543 36777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+...+...|++++|...+++++++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88889999999999999999987544
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=1.2e-08 Score=109.84 Aligned_cols=258 Identities=12% Similarity=0.029 Sum_probs=173.7
Q ss_pred ccccCChHHHHHHHHHHHhCCcccChh----hHHhHHHHccccCchHHHHHHHHHHHHhCC---CC--chhHHhHHhhhH
Q 003148 447 LTQENMFEEAMELFRVMLSERIKVDRV----TMVGVASACGYLGALDLAKWIYAYIEKNGI---HC--DMQLATALVDMF 517 (844)
Q Consensus 447 ~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~---~~--~~~~~~~li~~y 517 (844)
+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+... .+ .......+...|
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 445566666666666665532111111 233334445566777777777666543211 11 123355677788
Q ss_pred HhcCCHHHHHHHHHhcCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-C-hhHHHHHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEK----------R-DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIK--P-D-SIVFVGVLTA 582 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~-~~t~~~ll~a 582 (844)
...|++++|...+++... + ....+..+...+...|++++|...+++.++.... | . ..++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 889999999988877641 1 1235666778889999999999999998873221 1 1 2457777788
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCCcchHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----hHHHHHHHHHH
Q 003148 583 CSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG-----CMVDLLGRAGLLGEALDLIKSM-PVEPN-----DVIWGSLLAAC 651 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~ 651 (844)
+...|++++|..++++..+...-......+. .++..+...|++++|...+++. ...|. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 8899999999999999876322111111222 2345577999999999999988 32222 22566777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 652 QKHQNVDIAAYAAERITELDPEKS------GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|+.++|...++++++..+... ..+..++.+|...|++++|.+.++...+.
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999999999999987644321 36778899999999999999999887653
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=6.4e-09 Score=112.22 Aligned_cols=194 Identities=9% Similarity=0.033 Sum_probs=110.5
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-h
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEK-----RD-----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ----GIKPD-S 573 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 573 (844)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++.++. |-.+. .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445555566666666666655554431 11 235566666677777777777777666542 11111 1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-hHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM----PV--EPN-DVI 643 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~--~p~-~~~ 643 (844)
.++..+...|...|++++|.+++++..+.. +.+.....+..+...|.+.|++++|.+.+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666667777777777777777665411 11222555666777777777777777777665 11 122 223
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 644 WGSLLAACQKHQN---VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 644 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+..+...+...|+ +++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555566 55555555541 12223334566778888888888888877777654
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=1.5e-10 Score=106.51 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=94.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCh
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 625 (844)
+...|+.++|++.+++... ..|+. ..+..+...|...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 3445556666666665544 34433 3455566666666666666666666665 4444 55666677777777777
Q ss_pred HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 626 GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAY-AAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
++|+..|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777766 4556 45678888888888888876655 4689999999999999888888887775
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=1.7e-09 Score=110.91 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=154.8
Q ss_pred ccCchHHHHHHHHHHHHh-------CCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHH
Q 003148 484 YLGALDLAKWIYAYIEKN-------GIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-------R----DVSAWTAAI 545 (844)
Q Consensus 484 ~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li 545 (844)
..|+++.|...+....+. ..+....++..+...|...|++++|...|++..+ + ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456677777776665442 2233567788899999999999999999987651 1 245788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhc-----CCCCC-cchH
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQ------GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIH-----GVSPQ-IVHY 612 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~ 612 (844)
..|...|++++|++.|++.++. .-.|+. .++..+...+...|++++|..+++++.+.. +..|. ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998873 112433 578888889999999999999999988731 11333 5678
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-C---------CCCC-hHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCC
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-P---------VEPN-DVIWGSLLAACQKHQNV------DIAAYAAERITELDPEKS 675 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~---------~~p~-~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~~ 675 (844)
..+..+|.+.|++++|.++++++ . ..|. ...|..+.......+.. ..+...++......|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999876 1 1232 33454444444433332 222223332223345555
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..+..++.+|...|++++|.+++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999998765
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=7.6e-09 Score=105.09 Aligned_cols=202 Identities=13% Similarity=0.065 Sum_probs=129.3
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRMEK--R-D---VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS----IV 575 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 575 (844)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+...|.+.|++++|+..|++.++ ..|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 344445555666667777777777766652 2 2 44566666667777777777777777766 33421 23
Q ss_pred HHHHHHHHhc--------cCcHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHH
Q 003148 576 FVGVLTACSH--------GGLVNQGWHLFRSMTDIHGVSPQI-VHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGS 646 (844)
Q Consensus 576 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 646 (844)
+..+..++.. .|++++|...|+++.+. .|+. .....+..+....+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4455555555 66677777777666662 2332 1221111111000000 112456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCccc
Q 003148 647 LLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASA----------GKWTNVARVRLQMKEQGIRKLPGSS 713 (844)
Q Consensus 647 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 713 (844)
+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+.. |.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p~-- 227 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----PD-- 227 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----TT--
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----CC--
Confidence 67788999999999999999999999854 4788999999877 99999999999988743 22
Q ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 003148 714 SIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRD 750 (844)
Q Consensus 714 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 750 (844)
+|...+....+.++...+.+
T Consensus 228 -----------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 -----------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------CTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776665
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=2.3e-09 Score=124.79 Aligned_cols=167 Identities=11% Similarity=0.005 Sum_probs=102.1
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 003148 518 ARCGDPQRAMQVFRRME-----------KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH 585 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 585 (844)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|+++++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 44566666666665543 23445566666666666666666666666666 45544 455566666666
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
.|++++|...|+++.+ +.|+ ...|..+..+|.+.|++++ ++.++++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665 3444 4556666666666666666 6666665 3344 34466666666666677777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 003148 663 AAERITELDPEKSGVHVLLSNIYASAGK 690 (844)
Q Consensus 663 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 690 (844)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777666666666666655444
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=1.6e-09 Score=112.18 Aligned_cols=198 Identities=10% Similarity=0.019 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHH
Q 003148 487 ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQA 557 (844)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 557 (844)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 3467788999999998887652 12 45789999999999999999
Q ss_pred HHHHHHHHHCCCCCC-------hhHHHHHHHHHhcc-CcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCh
Q 003148 558 VELFNEMLRQGIKPD-------SIVFVGVLTACSHG-GLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLL 625 (844)
Q Consensus 558 ~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~ 625 (844)
+..|++.++ +.|+ ..++..+..+|... |++++|+.+|++..+...-..+ ...+..+...|.+.|++
T Consensus 97 ~~~~~~Al~--l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQ--IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999886 3221 24688888899996 9999999999999873211111 34678899999999999
Q ss_pred HHHHHHHHhC-CCCCChH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--HcC
Q 003148 626 GEALDLIKSM-PVEPNDV--------IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV-----HVLLSNIYA--SAG 689 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~~--------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g 689 (844)
++|++.+++. ...|+.. .|..+...+...|++++|+..++++++++|+.... +..++..|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999987 3333211 46777778889999999999999999999986543 344556664 456
Q ss_pred CchHHHHHHHHH
Q 003148 690 KWTNVARVRLQM 701 (844)
Q Consensus 690 ~~~~a~~~~~~m 701 (844)
++++|.+.++.+
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 788888877443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=7.6e-09 Score=107.07 Aligned_cols=193 Identities=11% Similarity=0.003 Sum_probs=136.4
Q ss_pred ccccCchHHHHHHHHHHHHh----CCCC-chhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHH
Q 003148 482 CGYLGALDLAKWIYAYIEKN----GIHC-DMQLATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGA 547 (844)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 547 (844)
+...|++++|...+....+. |-.+ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456666666666554432 2211 145677788888888888888888876652 12 3478888899
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCCC-------hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcc--------h
Q 003148 548 MAME-GNGEQAVELFNEMLRQGIKPD-------SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIV--------H 611 (844)
Q Consensus 548 ~~~~-g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~ 611 (844)
|... |++++|+..|++.++ +.|+ ..++..+...+...|++++|+.+|++..+ +.|+.. .
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK---SSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTSSCTTTGGGHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHhcCCcccHHHHHH
Confidence 9996 999999999999887 3332 24678888899999999999999999988 334321 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCChH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchHH
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-PVEPNDV------IWGSLLAACQ--KHQNVDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
|..++.+|...|++++|...+++. .+.|+.. .+..++.++. ..+++++|...++++.+++|.+...+.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 677888899999999999999988 5566432 3445556664 356788999999888888886643333
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=9.1e-09 Score=106.09 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=144.9
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 522 DPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
..+.....+......+...+..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|...++++.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 345556666666666667788888889999999999999999999 77876 678888889999999999999999987
Q ss_pred hhcCCCCCcchHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C
Q 003148 601 DIHGVSPQIVHYGC-MVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK--S 675 (844)
Q Consensus 601 ~~~~~~p~~~~~~~-li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 675 (844)
+ ..|+...... ..-.+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ +
T Consensus 179 ~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 L---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 6 4565433322 233467788888899988887 4456 56789999999999999999999999999999988 7
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..+..|+.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999998887654
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=1e-07 Score=96.63 Aligned_cols=175 Identities=10% Similarity=-0.004 Sum_probs=134.6
Q ss_pred HHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 526 AMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 526 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 677777665 345666677888899999999999999998875543454 5677788899999999999999999987
Q ss_pred hcCCCC-----CcchHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 003148 602 IHGVSP-----QIVHYGCMVDL--LGRAG--LLGEALDLIKSM-PVEPNDVIWGSLLAACQKHQNVDIAAYAAERITEL- 670 (844)
Q Consensus 602 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 670 (844)
..| +..+...|..+ ....| +..+|..+|+++ ...|+...-..+++++.+.|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 556 23444444444 33334 899999999998 44466333344555788899999999999988876
Q ss_pred ---------CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 671 ---------DPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 671 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+|+++.++..++.+....|+ +|.+++.++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58888888888888888897 8999999998753
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=2.9e-09 Score=97.84 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=103.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ 655 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 655 (844)
|...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556778899999999998866 4555 556778999999999999999999998 6666 5679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH-HHHHHh
Q 003148 656 NVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARV-RLQMKE 703 (844)
Q Consensus 656 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 703 (844)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 466655
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=3.6e-08 Score=97.51 Aligned_cols=178 Identities=12% Similarity=0.031 Sum_probs=114.8
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEK--RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSI----VFVG 578 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ 578 (844)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++ ..|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHHH
Confidence 344455667777888888888877652 22 24566677777888888888888888777 455542 3333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 003148 579 VLTACSH------------------GGLVNQGWHLFRSMTDIHGVSPQI-VHYGCMVDLLGRAGLLGEALDLIKSMPVEP 639 (844)
Q Consensus 579 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 639 (844)
+..++.. .|+.++|...|+++.+ ..|+. ..+..+. +.+.+.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~----~l~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATK----RLVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHH----HHHHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHH----HHHHHHHHH----------
Confidence 4444432 3556666666666555 22332 1111111 000000000
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455667889999999999999999999876 5688999999999999999999999887653
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=1.7e-08 Score=102.51 Aligned_cols=201 Identities=14% Similarity=0.046 Sum_probs=142.5
Q ss_pred ChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcCC--C-C---HhHHH
Q 003148 471 DRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGDPQRAMQVFRRMEK--R-D---VSAWT 542 (844)
Q Consensus 471 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~---~~~~~ 542 (844)
+...+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ | + ...|.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34455566667788999999999999998865322 156777888999999999999999998862 2 1 34677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHH
Q 003148 543 AAIGAMAM--------EGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYG 613 (844)
Q Consensus 543 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 613 (844)
.+..++.. .|++++|+..|++.++ ..|+.. ....+ ..+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 78888888 9999999999999999 567653 22111 111111110 011245
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc--
Q 003148 614 CMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKH----------QNVDIAAYAAERITELDPEKSG-- 676 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 676 (844)
.+...|.+.|++++|+..|+++ ...|+ ...|..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888899999999988877 33343 33666677777655 8999999999999999999864
Q ss_pred -hHHHHHHHHHHcCCch
Q 003148 677 -VHVLLSNIYASAGKWT 692 (844)
Q Consensus 677 -~~~~l~~~~~~~g~~~ 692 (844)
....+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3345555555544444
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=3.6e-08 Score=100.85 Aligned_cols=222 Identities=11% Similarity=0.013 Sum_probs=150.0
Q ss_pred cCChHHHHHHHHHHHh-------CCcccChhhHHhHHHHccccCchHHHHHHHHHHHHh------CC-CCchhHHhHHhh
Q 003148 450 ENMFEEAMELFRVMLS-------ERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKN------GI-HCDMQLATALVD 515 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~-~~~~~~~~~li~ 515 (844)
.|++++|+.+|++..+ ........++..+...+...|++++|...+..+.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3444555555444433 222223456667777788888999998888877654 22 234567888999
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCh-hHHH
Q 003148 516 MFARCGDPQRAMQVFRRMEK-------R----DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQ------GIKPDS-IVFV 577 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~ 577 (844)
.|...|++++|...|++..+ + ....|..+...|...|++++|+..|+++++. +-.|+. .++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999987652 1 2457888999999999999999999998874 114443 5788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc------CCCCC-cchHHHHHHHHHhcC------ChHHHHHHHHhCC-CCCC-hH
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIH------GVSPQ-IVHYGCMVDLLGRAG------LLGEALDLIKSMP-VEPN-DV 642 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~~g------~~~eA~~~~~~m~-~~p~-~~ 642 (844)
.+...+...|++++|..+++++.+.. ...+. ...|..+...+...+ .+.++...++... ..|+ ..
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 88889999999999999999987631 12333 334444444444333 3445555555553 2333 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
+|..+...+...|++++|...+++++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 78888899999999999999999998753
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=8.4e-09 Score=97.65 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH-HH
Q 003148 543 AAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL-LG 620 (844)
Q Consensus 543 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~ 620 (844)
.+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|...++++.+ ..|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 334445555555555555555554 34443 3455555555556666666666655544 22322211111111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHcCCchHHHH
Q 003148 621 RAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK--SGVHVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 696 (844)
+.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222333456666665 4456 46788888899999999999999999999999875 5588999999999999999999
Q ss_pred HHHHHHh
Q 003148 697 VRLQMKE 703 (844)
Q Consensus 697 ~~~~m~~ 703 (844)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=1.6e-07 Score=91.86 Aligned_cols=171 Identities=10% Similarity=-0.052 Sum_probs=134.7
Q ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 003148 526 AMQVFRRME-KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGG----LVNQGWHLFRSMT 600 (844)
Q Consensus 526 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 600 (844)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555444 3467777888888888888888988888888754 45666677777777 6 8899999998887
Q ss_pred hhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 003148 601 DIHGVSPQIVHYGCMVDLLGR----AGLLGEALDLIKSM-PVEPN---DVIWGSLLAACQK----HQNVDIAAYAAERIT 668 (844)
Q Consensus 601 ~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 668 (844)
+ . -+...+..|..+|.. .+++++|.+++++. ...|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2 245667778888876 78999999999987 44443 6788888888877 789999999999999
Q ss_pred hcCCCCCchHHHHHHHHHHc-C-----CchHHHHHHHHHHhCC
Q 003148 669 ELDPEKSGVHVLLSNIYASA-G-----KWTNVARVRLQMKEQG 705 (844)
Q Consensus 669 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 705 (844)
+. |.++..+..|+.+|... | ++++|.+++++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 77778899999999765 3 8999999999988876
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=3.3e-07 Score=98.42 Aligned_cols=224 Identities=12% Similarity=0.023 Sum_probs=165.9
Q ss_pred HccccCchHHHHHHHHHHHHhCCCCch----hHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CCH----hHHHHHHHH
Q 003148 481 ACGYLGALDLAKWIYAYIEKNGIHCDM----QLATALVDMFARCGDPQRAMQVFRRMEK-----RDV----SAWTAAIGA 547 (844)
Q Consensus 481 a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~ 547 (844)
.+...|+++.+...+..........+. ..++.+...|...|++++|...+++... .+. .+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345678999999999988776533332 2566777889999999999999987652 222 235667888
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCC--CCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC-CC--CcchHHHHHH
Q 003148 548 MAMEGNGEQAVELFNEMLRQ----GIK--PDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGV-SP--QIVHYGCMVD 617 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~----g~~--p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p--~~~~~~~li~ 617 (844)
+...|++++|+..+++.++. +.. |.. ..+..+...+...|++++|..++++..+...- .+ ....|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999988763 222 333 45666778889999999999999998763211 11 1345778889
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHH
Q 003148 618 LLGRAGLLGEALDLIKSM----PVEPNDVIWGS-----LLAACQKHQNVDIAAYAAERITELDPEKSG----VHVLLSNI 684 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m----~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 684 (844)
.+...|++++|...+++. +...+...|.. .+..+...|+.++|...++++++..|.++. .+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999876 11112223333 223467899999999999999987775422 45788999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 003148 685 YASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 685 ~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|++++|.+.++...+.
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=4.5e-08 Score=87.16 Aligned_cols=128 Identities=20% Similarity=0.309 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
.|..+...+...|++++|+.+|+++.+. .|+ ...+..+...+...|++++|..+++++.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC----------
Confidence 3555666666666666666666666652 332 244444555555555555555555555441 111
Q ss_pred HHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 619 LGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 68 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 23344455555555555566666666655555555555555666666666666666665
Q ss_pred HHHHh
Q 003148 699 LQMKE 703 (844)
Q Consensus 699 ~~m~~ 703 (844)
+.+.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55543
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=3.6e-08 Score=87.80 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.|..++..|.+.|++++|.++++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667788888889999999988887 3333 5678888888899999999999999999999999998999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 003148 689 GKWTNVARVRLQMKEQG 705 (844)
Q Consensus 689 g~~~~a~~~~~~m~~~~ 705 (844)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987753
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=3e-08 Score=96.73 Aligned_cols=153 Identities=10% Similarity=0.046 Sum_probs=109.0
Q ss_pred hHHhcCCHHHHHHHHHhcCCC---CHhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hH
Q 003148 516 MFARCGDPQRAMQVFRRMEKR---DVSAWTA----------------AIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IV 575 (844)
Q Consensus 516 ~y~k~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 575 (844)
.+.+.|++++|...|++.... +...|.. +...|.+.|++++|+..|++.++ +.|+. ..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 345566666666666655422 2334444 78888889999999999999888 67765 67
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC--hHHHHHHHHhCCCCCCh--HHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL--LGEALDLIKSMPVEPND--VIWGSLLAA 650 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~--~~eA~~~~~~m~~~p~~--~~~~~ll~~ 650 (844)
+..+..++...|++++|...|+++.+ +.|+ ...|..+...|...|+ .+++...+++.. .|+. ..|..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 78888888899999999999999887 5565 6678888888766654 445666666652 3333 344555556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 651 CQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
+...|++++|+..+++++++.|++
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCH
Confidence 677888999999999999999964
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=8.7e-08 Score=111.53 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred cccCchHHHHHHHHHHH--------HhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc
Q 003148 483 GYLGALDLAKWIYAYIE--------KNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAME 551 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 551 (844)
...|++++|.+.+..+. +. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677788877777776 22 24456778888899999999999999999877 45778999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHH
Q 003148 552 GNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 552 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~ 629 (844)
|++++|++.|++.++ +.|+. ..+..+..++...|++++ .+.|+++.+ +.|+ ...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 77876 678889999999999999 999999988 5565 678899999999999999999
Q ss_pred HHHHhC-CCCCC-hHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCchHH
Q 003148 630 DLIKSM-PVEPN-DVIWGSLLAACQKHQN-----VDIAAYAAERITELDPEKSGVHV 679 (844)
Q Consensus 630 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~ 679 (844)
+.++++ ...|+ ...|..+..++...|+ .+...++.+.+.++.++++....
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 999998 67786 4577777777766555 34444555555556666555443
No 102
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.79 E-value=7e-08 Score=103.96 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=176.8
Q ss_pred ccccccccccCChHHHHHHHHHHHhCCc-ccC----hhhHHhHHHHccccCchHHHHHHHHHHHHhCC-----C-CchhH
Q 003148 441 NTMLGGLTQENMFEEAMELFRVMLSERI-KVD----RVTMVGVASACGYLGALDLAKWIYAYIEKNGI-----H-CDMQL 509 (844)
Q Consensus 441 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~-~~~~~ 509 (844)
......+...|++++|+..|++...... .+| ..++..+...+...|+.+.|...+..+.+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445556789999999999999876421 123 24566677788899999999999988765311 1 12456
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-hhHH
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQG---IKPD-SIVF 576 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~-~~t~ 576 (844)
++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.++.. ..|+ ..++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 77889999999999999999987652 22 3468889999999999999999999988710 1233 4678
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCh-HHHHHHHH
Q 003148 577 VGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGRAGL---LGEALDLIKSMPVEPND-VIWGSLLA 649 (844)
Q Consensus 577 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~m~~~p~~-~~~~~ll~ 649 (844)
..+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|+.++++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88888999999999999999999874332222 3356667777888888 99999999997655543 36667888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 003148 650 ACQKHQNVDIAAYAAERITELD 671 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~ 671 (844)
.+...|++++|...++++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999988643
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=3.7e-08 Score=96.09 Aligned_cols=159 Identities=9% Similarity=0.063 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHH----------------HHHHHhccCcHHHHHHHHHHhHhh
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVG----------------VLTACSHGGLVNQGWHLFRSMTDI 602 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 602 (844)
.+-.....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ- 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 344455677889999999999999999 67876 45666 78889999999999999999988
Q ss_pred cCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCch
Q 003148 603 HGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN--VDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 603 ~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~ 677 (844)
+.|+ ...+..+..+|...|++++|++.|++. ...| +..+|..+...+...|+ .+.+...++++....|.. ..
T Consensus 83 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 159 (208)
T 3urz_A 83 --KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YA 159 (208)
T ss_dssp --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HH
T ss_pred --HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HH
Confidence 5565 778899999999999999999999998 5566 46688888888766553 445556666665443322 24
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 678 HVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 678 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+..++..+...|++++|...+++..+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 566788888999999999999988764
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=2.4e-08 Score=88.36 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.|+ ...+...+..|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 344555666666667777776666665 3344 455666666677777777777777777777777777777777
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 003148 682 SNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777766655
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=2.5e-08 Score=113.93 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=126.3
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++.++ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999877 34578899999999999999999999999999 67775 6788888999999999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---QNVDIAAYAAERITE 669 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 669 (844)
+++..+ ..|+ ...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988 4455 678889999999999999999999987 4455 467888899999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 003148 670 LDPEKSGVHVLLS 682 (844)
Q Consensus 670 ~~p~~~~~~~~l~ 682 (844)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=1.9e-08 Score=91.97 Aligned_cols=101 Identities=10% Similarity=-0.098 Sum_probs=89.6
Q ss_pred CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 604 GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 604 ~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
.+.|+ ...+..+...|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35565 556777888889999999999999888 5556 57799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998875
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.5e-08 Score=92.59 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=87.4
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4454 556677888889999999999999887 4455 677899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 003148 682 SNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.+|...|++++|.+.+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=5.4e-08 Score=111.19 Aligned_cols=144 Identities=10% Similarity=-0.008 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 003148 486 GALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFN 562 (844)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 562 (844)
|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666555442 2245556666666666677777766666554 2345566666666666677777777776
Q ss_pred HHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc---CChHHHHHHHHhC
Q 003148 563 EMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA---GLLGEALDLIKSM 635 (844)
Q Consensus 563 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---g~~~eA~~~~~~m 635 (844)
+.++ ..|+. ..+..+..++...|++++|.+.+++..+ ..|+ ...+..+..+|... |+.++|.+.+++.
T Consensus 82 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6666 44544 4566666666666777777776666665 2333 44556666666666 6666666666665
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=8e-08 Score=100.14 Aligned_cols=219 Identities=15% Similarity=0.062 Sum_probs=148.9
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQV 529 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 529 (844)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466777777777665421 110 0 11135666666665543 3456677888888777
Q ss_pred HHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hhHHHHHHHHHhccCcHHHHHHH
Q 003148 530 FRRMEK-----RD----VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGI---KPD--SIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 530 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
|.+..+ .+ ...|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776541 11 34678888889999999999999998775211 122 2467788888888 999999999
Q ss_pred HHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----hHHHHHHHHHHHhcCCHHHHHHH
Q 003148 596 FRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PV---EPN----DVIWGSLLAACQKHQNVDIAAYA 663 (844)
Q Consensus 596 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 663 (844)
|++..+.+.-..+ ...+..+..+|.+.|++++|++.+++. .+ .++ ...|..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998773211111 457788899999999999999999887 21 112 22566666677778999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHHcCCchHHHH
Q 003148 664 AERITELDPEKSGV-----HVLLSNIYASAGKWTNVAR 696 (844)
Q Consensus 664 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 696 (844)
+++++ ++|+.... ...++..| ..|+.+++.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33455545 5677666555
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=3.3e-08 Score=87.51 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=88.5
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+......+.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45554 4566667777777778888877777776 3444 667777788888888888888888776 4455 46689
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI 684 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 684 (844)
..+..++...|++++|+..++++++++|+++.++..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999998888777664
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=6.4e-07 Score=92.54 Aligned_cols=165 Identities=5% Similarity=-0.048 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----c
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----I 609 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 609 (844)
..+...+..+...|++++|++.+++.++.....+. ..+..+...+...|++++|...+++..+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999999888874222111 12334555677888999999999888762211112 3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN-----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE--K---- 674 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~---- 674 (844)
..|+.+...|...|++++|.++++++ ...|+ ..++..+...|...|++++|...+++++++.++ +
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999998876 11222 257888899999999999999999999986542 1
Q ss_pred CchHHHHHHHHHHcCCchHH-HHHHHHHHh
Q 003148 675 SGVHVLLSNIYASAGKWTNV-ARVRLQMKE 703 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 703 (844)
...|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45788999999999999999 777777654
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=5.9e-08 Score=101.13 Aligned_cols=196 Identities=12% Similarity=0.000 Sum_probs=150.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 003148 485 LGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEM 564 (844)
Q Consensus 485 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 564 (844)
.|++++|.+++....+.... . .|...+++++|...|... ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 57788899988887764321 1 122258899999988754 56788999999999999988
Q ss_pred HHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC--CC--cchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 565 LRQ----GIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS--PQ--IVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 565 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~--~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
.+. |-.+. ..+|..+...|...|++++|+..|++..+.+.-. +. ..++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 762 11111 2478888889999999999999999987732111 11 4577888999988 9999999999887
Q ss_pred -CCCC---C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 636 -PVEP---N----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG------VHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 636 -~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
.+.| + ..++..+...+...|++++|+..+++++++.|++.. .+..++.+|...|++++|.+.+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211 1 357888889999999999999999999998776542 5677888899999999999999988
Q ss_pred H
Q 003148 702 K 702 (844)
Q Consensus 702 ~ 702 (844)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=5e-07 Score=89.16 Aligned_cols=182 Identities=12% Similarity=-0.008 Sum_probs=131.4
Q ss_pred hHHhHHHHccccCchHHHHHHHHHHHHhCCCC--chhHHhHHhhhHHhcCCHHHHHHHHHhcC--CCC-H---hHHHHHH
Q 003148 474 TMVGVASACGYLGALDLAKWIYAYIEKNGIHC--DMQLATALVDMFARCGDPQRAMQVFRRME--KRD-V---SAWTAAI 545 (844)
Q Consensus 474 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~---~~~~~li 545 (844)
.+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34445566788899999999999998865332 23567778899999999999999999876 232 2 2455555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCC
Q 003148 546 GAMAM------------------EGNGEQAVELFNEMLRQGIKPDSIV-FVGVLTACSHGGLVNQGWHLFRSMTDIHGVS 606 (844)
Q Consensus 546 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 606 (844)
.++.. .|+.++|+..|+++++ ..|+... ...... ...+...+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~----- 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK----- 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH-----
Confidence 55554 5789999999999998 6787642 221111 0011111111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 003148 607 PQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG 676 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 676 (844)
..-.+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|+..++++....|++..
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678899999999999999987 444542 46888888999999999999999999999998754
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=9.3e-08 Score=86.69 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=86.2
Q ss_pred CCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 605 VSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 605 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4443 445666778888899999999999887 4455 677899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 003148 682 SNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=1.4e-07 Score=89.16 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=118.7
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-H-Hh
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLT-A-CS 584 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a-~~ 584 (844)
...+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+ ..|+.. +..+.. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 3455667888999999999999887 34677899999999999999999999999877 455333 322222 1 11
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHHHHHHhcCCHHH
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLLAACQKHQNVDI 659 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~ 659 (844)
..+...+|...+++..+ ..|+ ...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223357888888877 5565 678888999999999999999999987 55664 5588899999999999999
Q ss_pred HHHHHHHHHh
Q 003148 660 AAYAAERITE 669 (844)
Q Consensus 660 a~~~~~~~~~ 669 (844)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=1.4e-06 Score=89.35 Aligned_cols=209 Identities=13% Similarity=0.134 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC--CHHHHHHHHHhcC---CCCHhHHHHHHHHH----Hhc---CChHH
Q 003148 489 DLAKWIYAYIEKNGIHCDMQLATALVDMFARCG--DPQRAMQVFRRME---KRDVSAWTAAIGAM----AME---GNGEQ 556 (844)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~ 556 (844)
++|..+...++..+. .+..+++.--..+...| +++++++.++.+. .++...|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 345555555555442 23444555555555556 7888888877766 34556676654444 444 67888
Q ss_pred HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH--HHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC------hH
Q 003148 557 AVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVN--QGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL------LG 626 (844)
Q Consensus 557 A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~------~~ 626 (844)
++++++++++ ..|.. ..|..-.....+.|.++ +++++++++.+ ..|. ...|+....++.+.|+ ++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8888888887 55644 56666666666677776 88888888877 3343 4556666666666665 78
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQN-VDIAAYAAERITELD---PEKSGVHVLLSNIYASAGKWTNVARVRLQ 700 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 700 (844)
+++++++++ ...| |...|+-+...+.+.|+ .+.....++++++++ |.++.++..|+++|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888776 4444 67788888777777775 344556777777765 67777788888888888888888888888
Q ss_pred HHh
Q 003148 701 MKE 703 (844)
Q Consensus 701 m~~ 703 (844)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=2e-06 Score=88.73 Aligned_cols=160 Identities=7% Similarity=-0.015 Sum_probs=120.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCChh----HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHH
Q 003148 544 AIGAMAMEGNGEQAVELFNEMLRQG-IKPDSI----VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGC 614 (844)
Q Consensus 544 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 614 (844)
.+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|..+|+++.+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788899999999999988732 112211 2334666777888999999999998872222223 225888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----C---CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 003148 615 MVDLLGRAGLLGEALDLIKSMP-----V---EPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHV 679 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 679 (844)
+...|...|++++|+++++++- . .|. ..+|..+...|...|++++|...+++++++.++. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999888761 1 112 2378888999999999999999999999865533 45788
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHh
Q 003148 680 LLSNIYASAGK-WTNVARVRLQMKE 703 (844)
Q Consensus 680 ~l~~~~~~~g~-~~~a~~~~~~m~~ 703 (844)
.++.+|...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988764
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=5.8e-08 Score=99.63 Aligned_cols=191 Identities=10% Similarity=-0.020 Sum_probs=138.9
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHH
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLT 581 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 581 (844)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556677888899999999999998775 44778899999999999999999999999998 67766 67888888
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIA 660 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 660 (844)
++...|++++|...|++..+ +.|+ ...+...+....+..+..+... .......++..+...+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 99999999999999999877 3332 1122222333322222222222 2222333444444444 3333 6899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHhC
Q 003148 661 AYAAERITELDPEKSGVHVLLSNIYASA-GKWTNVARVRLQMKEQ 704 (844)
Q Consensus 661 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 704 (844)
.+.++++++++|++......+..++.+. +++++|.+++.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777777777776 7899999999888663
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=1.4e-08 Score=107.25 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLF 596 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 596 (844)
.+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+.-
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~ 192 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQ 192 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHH
Confidence 3445555555554431 2345677777777777888888888877777 44443110 001111110
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 597 RSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 597 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.. ....|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|++
T Consensus 193 ~~---------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 193 AL---------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 00 1346777888888888888888888887 4455 56788999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCchHH-HHHHHHHH
Q 003148 675 SGVHVLLSNIYASAGKWTNV-ARVRLQMK 702 (844)
Q Consensus 675 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 702 (844)
+.++..++.++...|++++| .+.++.|.
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 45666664
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=3.3e-07 Score=94.35 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=84.0
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHH-HHHHHHH
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVF-VGVLTAC 583 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~ 583 (844)
.....+...+.+.|++++|...|++.. ..+...+..+...+.+.|++++|+..++++.. ..|+.... ......+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHHH
Confidence 333444455555566666666665543 22445555555566666666666666665554 34443221 1112224
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hHHHHHHHHHHHhcCCHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN---DVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~ 658 (844)
...+..++|...+++..+ ..|+ ...+..+..+|...|++++|++.++++ ...|+ ...|..++..+...|+.+
T Consensus 196 ~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 444555555555555554 3343 445555666666666666666666655 33332 445666666666666666
Q ss_pred HHHHHHHHHH
Q 003148 659 IAAYAAERIT 668 (844)
Q Consensus 659 ~a~~~~~~~~ 668 (844)
+|...+++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666654
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=1.2e-06 Score=85.36 Aligned_cols=144 Identities=8% Similarity=-0.069 Sum_probs=104.7
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL 588 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 588 (844)
+..+...|.+.|++++|...|++..+++...|..+...|...|++++|++.|++.++ ..|+. ..+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 344566777888888888888888877888888888888888888888888888887 45554 567777778888888
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 589 VNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPN-DVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 589 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+++|.+.|+++.+ ..|+..... +...| +...|+ ..+|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~---~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALI---QLRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHH---TTTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888776 233311000 00000 023333 357788888888999999999999999
Q ss_pred HhcCCCC
Q 003148 668 TELDPEK 674 (844)
Q Consensus 668 ~~~~p~~ 674 (844)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999976
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=6.6e-07 Score=87.27 Aligned_cols=125 Identities=9% Similarity=-0.036 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 653 (844)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|++.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666777777777776553 355667777777777778888887777776 3334 56688888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 654 HQNVDIAAYAAERITELDPEKS----------------GVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 889999999999999999999999988753
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=1.1e-05 Score=89.49 Aligned_cols=372 Identities=12% Similarity=0.021 Sum_probs=180.6
Q ss_pred hcC-CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCceehHHHHHHHHHcCC-hHHHHH
Q 003148 251 KLQ-NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKD--RNLVLCNTIMSNYVRLGL-AREALA 326 (844)
Q Consensus 251 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~ 326 (844)
+.| +++.|+.+++.++..- |. |+++.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4778888888776542 22 889999999988765 677788888877766663 345666
Q ss_pred HHHHHHhc-CCCC-ChhhHHHHHHHHh----hcCChhhHHHHHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhh
Q 003148 327 ILDEMLLH-GPRP-DRVTMLSAVSASA----QLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDH 400 (844)
Q Consensus 327 l~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 400 (844)
+|+..+.. |..| +...|...+..+. ..++.+.++.++..+++.....-..+|......-... ....+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~-~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELEL-NKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHh-ccccHHHHHHH
Confidence 77766653 4444 3344544444432 2356677777887777643322233333332221111 12222222221
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccccccccccccc-------CChHHHHHHHHHHHhCCcc
Q 003148 401 MSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPG----RDHISWNTMLGGLTQE-------NMFEEAMELFRVMLSERIK 469 (844)
Q Consensus 401 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~-------g~~~~A~~l~~~m~~~g~~ 469 (844)
.. +.+..|..+++.+.. .+...|...+.--..+ +..+.+..+|+++.... +
T Consensus 149 ~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 TL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred Hh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 10 011111111111110 1112232222211111 01234455666665532 1
Q ss_pred cChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHH-HHHHHhcC------------CC
Q 003148 470 VDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRA-MQVFRRME------------KR 536 (844)
Q Consensus 470 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A-~~~~~~~~------------~~ 536 (844)
-+...+...+.-+...|+++.|+.+++..++. +.+...+.. |+...+.++. ..+.+... ..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccc
Confidence 22334444444445566777777777777666 333333221 2221111111 11111100 00
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh-ccCcHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACS-HGGLVNQGWHLFRSMTDIHGVSPQIVHYGCM 615 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 615 (844)
....|...+....+++..+.|..+|++. +. ..++...|......-. ..++.+.|..+|+...+.++-. ...+...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHH
Confidence 1244666666666666777777777777 21 1112223322111111 1225777777777777643222 3345556
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003148 616 VDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 616 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 361 id~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666677777777777777762 2355666666666666776666666665553
No 124
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=7.8e-07 Score=90.17 Aligned_cols=167 Identities=10% Similarity=0.082 Sum_probs=123.7
Q ss_pred CchhHHhHHhhhHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----Chh
Q 003148 505 CDMQLATALVDMFARCGDPQRAMQVFRRMEK-----RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKP-----DSI 574 (844)
Q Consensus 505 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~ 574 (844)
++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchH
Confidence 3444445778888899999999999988742 2456777788899999999999999999988 678 356
Q ss_pred HHHHHHHHHh----ccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CC----------CC
Q 003148 575 VFVGVLTACS----HGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PV----------EP 639 (844)
Q Consensus 575 t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----------~p 639 (844)
+...+..++. ..+++++|..+|+++.+. .|+......+..++.+.|++++|++.++.+ .. .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 6666665532 234899999999998773 344223334455888999999999998765 21 25
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 640 -NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 640 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
|+.+...++......|+ +|.+.++++.+..|+++...
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 45566566666666776 88999999999999997443
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=4.1e-06 Score=81.63 Aligned_cols=172 Identities=13% Similarity=-0.023 Sum_probs=132.9
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 003148 491 AKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME-KRDVSAWTAAIGAMAMEG----NGEQAVELFNEML 565 (844)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 565 (844)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.. ..+...+..|...|.. + +.++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 56667778888888899999999998876 4467788888888877 6 8999999999998
Q ss_pred HCCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHh----cCChHHHHHHHHh
Q 003148 566 RQGIKPDSIVFVGVLTACSH----GGLVNQGWHLFRSMTDIHGVSPQ---IVHYGCMVDLLGR----AGLLGEALDLIKS 634 (844)
Q Consensus 566 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~eA~~~~~~ 634 (844)
+.| +...+..+...|.. .+++++|.++|++..+ ..|. ...+..|..+|.. .++.++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55677777778877 7899999999999877 3343 6778888899988 7899999999998
Q ss_pred C-CCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 003148 635 M-PVEPNDVIWGSLLAACQKH-Q-----NVDIAAYAAERITELDP 672 (844)
Q Consensus 635 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 672 (844)
. ...++...+..|...|... | |.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 3334666777777777542 3 89999999999988764
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.8e-07 Score=79.33 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566777788888888888888877 4445 567888888899999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 003148 688 AGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 688 ~g~~~~a~~~~~~m~~~ 704 (844)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999888764
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=1.9e-07 Score=85.27 Aligned_cols=109 Identities=9% Similarity=-0.033 Sum_probs=78.3
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+..+...+...|++++|...|+...+ ..|+ ...|..+..+|.+.|++++|++.++++ ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 44544 3455566666777777777777777666 3343 556667777777777777777777776 3445 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
..+..++...|++++|+..+++++++.|+++.....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 888888899999999999999999999988765433
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=1.1e-06 Score=81.65 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...|++..+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33344444455555555555555544 222 2445555666666666666666666655 2333 4567888888889
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHH--HHHHHHHcCCchHHHHHHHHHHh
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVL--LSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..|++++|...+++++++.|+++..+.. ++..+...|++++|.+.+....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998877744 44448888999999998887654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=1.3e-06 Score=76.33 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
.+..+...+...|++++|.++++++.+.. +.+...+..++..|.+.|++++|..+++++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34444555555555555555555555411 112445556666666667777776666665 2223 5667888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAG 689 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 689 (844)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888888888876654
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=7.8e-07 Score=81.13 Aligned_cols=104 Identities=10% Similarity=-0.062 Sum_probs=88.1
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+..+...+...|++++|...|+++.+ +.|+ ...|..+..+|.+.|++++|++.|+++ .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 56665 4677788888899999999999999988 5565 677888999999999999999999988 5556 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999764
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=2.8e-07 Score=92.18 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=135.9
Q ss_pred hcCCHHHHHHHHHhcC---CCCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCChh--------------
Q 003148 519 RCGDPQRAMQVFRRME---KRDVSAWTAA-------IGAMAMEGNGEQAVELFNEMLRQGIKPDSI-------------- 574 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 574 (844)
..++...|.+.|.+.. ......|+.+ ...+...++..+++..+.+-++ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888999998876 3356788887 4566666666666666665554 555431
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----H
Q 003148 575 --------VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPND----V 642 (844)
Q Consensus 575 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~----~ 642 (844)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355677889999999999988865 3455335666777899999999999999877434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELD--PE-KSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778889999999999999999998533 54 4457788999999999999999999999875
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=7.6e-07 Score=84.00 Aligned_cols=117 Identities=8% Similarity=0.075 Sum_probs=79.7
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH-HHhcCCH--H
Q 003148 585 HGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA-CQKHQNV--D 658 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 658 (844)
..|++++|...++...+ ..|+ ...|..+...|...|++++|.+.++++ ...| +...|..+... +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45556666666666555 2232 455666666677777777777776665 2333 45567777767 6677887 8
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888887765
No 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=9.3e-07 Score=97.93 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=89.9
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHH
Q 003148 582 ACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVD 658 (844)
Q Consensus 582 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 658 (844)
.+...|++++|.+.++++.+ +.|+ ...|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 45566777777777777766 3444 567777778888888888888888776 4555 4668889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCchHHHHHHHH
Q 003148 659 IAAYAAERITELDPEKSGVHVLLSNI--YASAGKWTNVARVRLQ 700 (844)
Q Consensus 659 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 700 (844)
+|+..++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8899999999999874
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=1.3e-06 Score=77.02 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHH
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAAC 651 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 651 (844)
.+..+...+...|++++|...+++..+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIE---LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344445555555666666666665554 222 2445556666666677777777776665 3334 456788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 003148 652 QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWT 692 (844)
Q Consensus 652 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 692 (844)
...|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999889999999998888763
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.2e-06 Score=77.72 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.+..+...|...|++++|.+.++++ ...| +...|..+...+...|++++|...++++++++|++...+..++.++...
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 3444444444444444444444443 2223 4567777788888888999999999999999998888888888888776
Q ss_pred CC
Q 003148 689 GK 690 (844)
Q Consensus 689 g~ 690 (844)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1e-06 Score=83.12 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=93.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH-HHhcCCh-
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL-LGRAGLL- 625 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~- 625 (844)
..|++++|+..+++.++ ..|+. ..+..+...|...|++++|..+|+++.+ +.|+ ...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45677778888887777 45544 5677777778888888888888888776 3343 5566777777 7788888
Q ss_pred -HHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 626 -GEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 626 -~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
++|.+.++++ ...| +...|..+...+...|++++|...+++++++.|+++.....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 8888888877 4445 46688888889999999999999999999999988655443
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=3.6e-05 Score=79.17 Aligned_cols=158 Identities=10% Similarity=-0.006 Sum_probs=120.6
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCCC---CH-----h-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCh----hHHHH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEKR---DV-----S-AWTAAIGAMAMEGNGEQAVELFNEMLRQGIK-PDS----IVFVG 578 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~~---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 578 (844)
.+..+.+.|++++|...++...+. +. . .+..+...+...|++++|+..|++.++.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999986632 11 1 2334666677778999999999999984322 222 26888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhc----CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hHHHH
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIH----GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-------PVEPN-DVIWG 645 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~ 645 (844)
+...|...|++++|..+|+++.+.. +..+. ...|..+...|.+.|++++|.+++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988522 12222 347888999999999999999999876 11222 55788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 003148 646 SLLAACQKHQ-NVDIAAYAAERITEL 670 (844)
Q Consensus 646 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 670 (844)
.+..++...| +.++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 469999999999864
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=6.9e-07 Score=78.24 Aligned_cols=96 Identities=17% Similarity=0.064 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+.+.|++++|...+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..|+.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666788899999999999999988 5556 57788889889999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=4.6e-07 Score=82.01 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=76.9
Q ss_pred CCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHH
Q 003148 569 IKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIW 644 (844)
Q Consensus 569 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 644 (844)
+.|+. ..+..+...+...|++++|...|+.+.+ ..|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34433 3444555566666777777777776665 3343 555666777777777777777777766 3344 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 645 GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 645 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
..+..++...|++++|...+++++++.|+++.......
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 78888888899999999999999999998876655543
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.37 E-value=4.9e-05 Score=77.84 Aligned_cols=224 Identities=8% Similarity=0.036 Sum_probs=162.6
Q ss_pred ChHHHHHHHHHHHhCCcccChhh-HHhHHHHccccC--chHHHHHHHHHHHHhCCCCchhHHhHHhhhH----Hhc---C
Q 003148 452 MFEEAMELFRVMLSERIKVDRVT-MVGVASACGYLG--ALDLAKWIYAYIEKNGIHCDMQLATALVDMF----ARC---G 521 (844)
Q Consensus 452 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~k~---g 521 (844)
..++|++++.+++. +.|+..| ++.--.++...+ .++++...+..++....+ +..+++--...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 34577777777765 3555443 233333334455 777777777777766533 333444333333 344 7
Q ss_pred CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc------H
Q 003148 522 DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGE--QAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL------V 589 (844)
Q Consensus 522 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~------~ 589 (844)
+++++..+++.+. .+|..+|+--.-.+.+.|.++ ++++.++++++ ..|.. ..|..-.....+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 8999999999887 567888988888888889888 99999999999 55654 667766666777776 9
Q ss_pred HHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCChHHHHHHHHHHHhcCCHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGE-ALDLIKSM-PV----EPNDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
++++++++.++. ..|+ ...|+.+..++.+.|+..+ +.++.++. .. ..+...|..++..+.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999988 4555 7788889999999998544 66677776 22 2366789999999999999999999
Q ss_pred HHHHHHh-cCCCCCchHHHHHH
Q 003148 663 AAERITE-LDPEKSGVHVLLSN 683 (844)
Q Consensus 663 ~~~~~~~-~~p~~~~~~~~l~~ 683 (844)
+++.+.+ .+|-...+|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999997 89988777765543
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=6.8e-07 Score=89.42 Aligned_cols=137 Identities=15% Similarity=0.005 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHH
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDL 618 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~ 618 (844)
+-.+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+...+ .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 34456677888899999988888876 456665555666678889999999999986544 11 111 2356778889
Q ss_pred HHhcCChHHHHHHHHhC---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 619 LGRAGLLGEALDLIKSM---PVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
+.+.|++++|++.+++. +..|. ...+..+..++.+.|+.++|...++++++.+|+ +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999987 22253 336777788899999999999999999999998 65555553
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=2.4e-06 Score=72.89 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KSGVHVLLSNI 684 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 684 (844)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888776 3334 5667888888888999999999999999999998 88889999999
Q ss_pred HHHc-CCchHHHHHHHHHHhCC
Q 003148 685 YASA-GKWTNVARVRLQMKEQG 705 (844)
Q Consensus 685 ~~~~-g~~~~a~~~~~~m~~~~ 705 (844)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887654
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.4e-06 Score=76.90 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSG-------VHVLL 681 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 681 (844)
.+..++..+.+.|++++|++.|+++ .+.| +...|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788888899999999998887 5556 4668889999999999999999999999999987754 56778
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 003148 682 SNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 682 ~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999988765
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=3.6e-07 Score=88.13 Aligned_cols=170 Identities=8% Similarity=-0.051 Sum_probs=104.4
Q ss_pred HhhhHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcH
Q 003148 513 LVDMFARCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLV 589 (844)
Q Consensus 513 li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 589 (844)
.+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++ ..|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hH
Confidence 33444555667777666654332 1345677777778888888888888888877 44433211000 00
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 590 NQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 590 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+.-. .. .....|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01245667778888888888888888876 4444 5668888888999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHHcCCchHHH-HHHHHHHh
Q 003148 668 TELDPEKSGVHVLLSNIYASAGKWTNVA-RVRLQMKE 703 (844)
Q Consensus 668 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 703 (844)
++++|+++.++..++.++...|+.+++. ..++.|-.
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888887776 44544443
No 145
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.31 E-value=2.1e-05 Score=87.24 Aligned_cols=168 Identities=6% Similarity=-0.097 Sum_probs=115.3
Q ss_pred HHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003148 524 QRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMT 600 (844)
Q Consensus 524 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 600 (844)
+.+..+|+++. ..+...|-..+.-+.++|+.++|..+|++.+.. |+...+......+...+. .++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHH
Confidence 44567777765 345778988888889999999999999999995 776543332222222221 133332
Q ss_pred hhcC--------CCC---CcchHHHHHHHHHhcCChHHHHHHHHhCCCCC--ChHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 003148 601 DIHG--------VSP---QIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP--NDVIWGSLLAACQK-HQNVDIAAYAAER 666 (844)
Q Consensus 601 ~~~~--------~~p---~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~ 666 (844)
+.+- ..+ ....|...++.+.+.|.++.|.++|+++ ..| +..+|......-.. .++.+.|..+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 2110 001 1245667777777888999999999998 333 33455433322222 3469999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 003148 667 ITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQM 701 (844)
Q Consensus 667 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 701 (844)
+++.-|+++..+...++...+.|+.+.|+.+++.+
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988988877777888888999999999999886
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=3.2e-06 Score=93.58 Aligned_cols=119 Identities=7% Similarity=-0.011 Sum_probs=80.2
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSH 585 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 585 (844)
+..+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++.++ +.|+. ..+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3445566777888888888887665 34567777888888888888888888888887 56654 567777777778
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH--HHhcCChHHHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL--LGRAGLLGEALDLIK 633 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~eA~~~~~ 633 (844)
.|++++|.+.|+++.+ +.|+ ...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888887776 3343 3444445444 666777777777776
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.29 E-value=1.8e-05 Score=81.41 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=122.2
Q ss_pred hHHhHHhhhHHhcCCHHHHHHHHHhcCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--h
Q 003148 508 QLATALVDMFARCGDPQRAMQVFRRMEK---RDV------SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIK---PD--S 573 (844)
Q Consensus 508 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~ 573 (844)
..+...+..|...|++++|.+.+....+ ... ..+..+...+...|++++|+..|++.++.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788899999999999876542 111 22344566677889999999999999863221 22 2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN------- 640 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~------- 640 (844)
.++..+...|...|++++|..+|+++.+.....|+ ...|..+...|.+.|++++|.+++++. .+.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999998842222333 257889999999999999999999876 11111
Q ss_pred hHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 003148 641 DVIWGSLLAACQKHQNVDIA-AYAAERITEL 670 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 670 (844)
..+|..+...+...|+.++| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55788888899999999999 7778888763
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=1.1e-05 Score=77.66 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PV---EP-N----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE--KS---- 675 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~---- 675 (844)
.+..+...|...|++++|.+.+++. .. .+ + ..++..+...+...|++++|...+++++++.+. ++
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444445555555555555555443 10 11 1 224555666667777777777777777654321 11
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 676 GVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 676 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..+..++.+|...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2346778888888888888887777654
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=6.3e-06 Score=72.89 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 556778888899999999999999987 5555 56788999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 999999999999988764
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=2.3e-06 Score=79.45 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444555555555555555555554 3333 3445666666666666666666666666666666666666666666666
Q ss_pred CCchHHHHHHHHHHh
Q 003148 689 GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 g~~~~a~~~~~~m~~ 703 (844)
|++++|.+.+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666666554
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=5.6e-06 Score=79.70 Aligned_cols=153 Identities=12% Similarity=-0.005 Sum_probs=105.6
Q ss_pred hcCCHHHHHH---HHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCh-hHHHHHHHHHhccCcHH
Q 003148 519 RCGDPQRAMQ---VFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLR----QGIKPDS-IVFVGVLTACSHGGLVN 590 (844)
Q Consensus 519 k~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~ 590 (844)
..|++++|.+ .+..-+......|..+...|...|++++|+..+++.++ .|..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4677788877 55443334456777788888888888888888887765 1222222 45677777888888999
Q ss_pred HHHHHHHHhHhhcCCCC-C----cchHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hHHHHHHHHHHHhcCCH
Q 003148 591 QGWHLFRSMTDIHGVSP-Q----IVHYGCMVDLLGRAGLLGEALDLIKSM----PVEPN----DVIWGSLLAACQKHQNV 657 (844)
Q Consensus 591 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 657 (844)
+|..++++..+...-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 98888888776322122 1 345777888888899999998888776 11122 22456777788889999
Q ss_pred HHHHHHHHHHHhcC
Q 003148 658 DIAAYAAERITELD 671 (844)
Q Consensus 658 ~~a~~~~~~~~~~~ 671 (844)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888753
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.26 E-value=4e-06 Score=77.67 Aligned_cols=64 Identities=5% Similarity=-0.026 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999888764
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=4.3e-06 Score=77.65 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA 650 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 650 (844)
..+..+...+...|++++|+.+|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455555556666666666666666655 3343 556666777777777777777777766 4445 46688889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
+...|++++|+..++++++++|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886665543
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=5e-06 Score=74.23 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=81.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 608 QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 608 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
+...|..+...+...|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3556777777888888888888888776 3344 4668888888889999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 003148 686 ASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 686 ~~~g~~~~a~~~~~~m~~~ 704 (844)
...|++++|.+.+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999888764
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=8.9e-06 Score=70.01 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASA 688 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 688 (844)
.+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445555566666666666666655 2233 4555666666666666777777777777776666666666677777777
Q ss_pred CCchHHHHHHHHHHh
Q 003148 689 GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 g~~~~a~~~~~~m~~ 703 (844)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777766666654
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.24 E-value=4e-06 Score=73.77 Aligned_cols=107 Identities=10% Similarity=-0.040 Sum_probs=67.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33444445555555555555555544 2232 445555666666666666666666655 3344 4557777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 003148 653 KHQNVDIAAYAAERITELD------PEKSGVHVLLSNIY 685 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 685 (844)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888 77766666665543
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1e-05 Score=73.07 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSN 683 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 683 (844)
...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334445555556666666666666555 44454 3456666666666666666666666666666666666666666
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 003148 684 IYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 684 ~~~~~g~~~~a~~~~~~m~~ 703 (844)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=1.3e-05 Score=69.61 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778899999999999999999988 3334 56788999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=4.7e-07 Score=99.91 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=110.5
Q ss_pred hcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 003148 519 RCGDPQRAMQVFRRMEK---RDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHL 595 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 595 (844)
..+++++|...|+...+ .....|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~~ 312 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKAS 312 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHHH
Confidence 34455555555544332 2345677777778888888888888888777 44443210 0 0111110
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 596 FRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 596 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
- . -....|..+..+|.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|+
T Consensus 313 ~-~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 313 E-S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp H-H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred H-H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0 0 01346778888888999999999998887 4455 5668899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCchHHHH-HHHHHHh
Q 003148 674 KSGVHVLLSNIYASAGKWTNVAR-VRLQMKE 703 (844)
Q Consensus 674 ~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 703 (844)
+..++..++.++...|+++++.+ .++.|-.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998874 4454443
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=3.4e-05 Score=79.85 Aligned_cols=230 Identities=11% Similarity=0.098 Sum_probs=154.6
Q ss_pred CChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC-CHHHHHHH
Q 003148 451 NMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG-DPQRAMQV 529 (844)
Q Consensus 451 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~~~ 529 (844)
.++.+|...++.+.+.+. ..+++..+...++.... .+..+++.--..+...| .+++++++
T Consensus 51 ~~y~~~~~~~r~~~~~~e------------------~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~ 111 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEE------------------KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRL 111 (349)
T ss_dssp HHHHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 356666666666655442 22456666666666552 24455565555566667 58999999
Q ss_pred HHhcC---CCCHhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH--------HHHHH
Q 003148 530 FRRME---KRDVSAWTAAIGAMAME-G-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVN--------QGWHL 595 (844)
Q Consensus 530 ~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~--------~a~~~ 595 (844)
++.+. .++..+|+.-...+.+. + ++++++++++++++ ..|.. ..|..-.....+.|.++ +++++
T Consensus 112 ~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 112 MNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 88876 45677888877777666 6 88999999999988 56654 56665555555555555 88999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCC-------hHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCH--------
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRAGL-------LGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNV-------- 657 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~-------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-------- 657 (844)
++++.+ ..|. ...|+....++.+.|+ +++++++++++ ...| |...|+-+...+.+.|+.
T Consensus 190 ~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 190 CNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 998887 3443 6677777788887776 68899998877 4455 677898887777766543
Q ss_pred ------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 658 ------------DIAAYAAERITELD------PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 658 ------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.........+.... +..+-+...|+++|...|+.++|.++++.+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222333332222 334446678999999999999999999998753
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=1e-05 Score=69.66 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...++...+ ..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555555555555555544 222 2445555666666666666666666655 3334 4567778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 653 KHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998877777666543
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=6.9e-06 Score=72.41 Aligned_cols=92 Identities=18% Similarity=0.079 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-PVEPND----VIWGSLLAACQKHQNVDIAAYAAERITELDPEK---SGVHVLLSNI 684 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 684 (844)
..+...+.+.|++++|.+.|++. ...|+. ..|..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34566677788888888887776 333432 367777778888888999999999888888888 6668888888
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 003148 685 YASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 685 ~~~~g~~~~a~~~~~~m~~~ 704 (844)
|...|++++|.+.++.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999888887764
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=3.7e-06 Score=75.83 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITEL-------DPEKSGVH----VLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
..|..+..++...|++++|+..+++++++ +|+++..| ..++.++...|++++|.+.+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888888899999999999999999999 99998899 99999999999999999999988763
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=1.3e-05 Score=74.11 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPD-SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
..|..+...+...|++++|+..|++.++ ..|+ ...+..+...+...|++++|...+++..+ ..|+ ...|..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 3566667777778888888888888777 4554 35667777777788888888888888776 3343 56677778
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 003148 617 DLLGRAGLLGEALDLIKSM-PVEP-NDVIWGS--LLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
..|.+.|++++|.+.++++ ...| +...|.. ++..+...|++++|...+++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888776 3334 3444533 33336667888888888776654
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-05 Score=72.29 Aligned_cols=107 Identities=12% Similarity=-0.019 Sum_probs=65.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLA 649 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 649 (844)
+..+...+...|++++|..+|++..+ ..|+ ...|..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33333344444444444444444433 2233 334455555566666666666666554 2334 4567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
++...|++++|...++++++++|++...+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888889999999999999999998877766666554
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=1.6e-05 Score=69.86 Aligned_cols=96 Identities=18% Similarity=0.070 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456777889999999999999999987 3444 57788889999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 003148 687 SAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 687 ~~g~~~~a~~~~~~m~~~ 704 (844)
..|++++|.+.+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=9.3e-06 Score=85.43 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=75.0
Q ss_pred chhHHhHHhhhHHhcCCHHHHHHHHHhcC--CC-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003148 506 DMQLATALVDMFARCGDPQRAMQVFRRME--KR-D---------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 506 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 567 (844)
+...+..+...|.+.|++++|...|++.. .| + ...|..+...|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 46678889999999999999999999876 22 2 35666677777777777777777777766
Q ss_pred CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHH
Q 003148 568 GIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 568 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 628 (844)
+.|+. ..+..+..++...|++++|+..|+++.+ +.|+ ...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45543 4555555566666666666666666555 2333 23333344444444444433
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=4.2e-05 Score=86.13 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc
Q 003148 521 GDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN----------GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG 586 (844)
Q Consensus 521 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 586 (844)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++++ ..|+. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888776 4456788887777777777 8999999999999 67766 6788888888888
Q ss_pred C--cHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc------
Q 003148 587 G--LVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAG-LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH------ 654 (844)
Q Consensus 587 g--~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 654 (844)
| +++++++.++++.+ ..|+ ...|+....++.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 77999999999998 4555 667888888888999 899999999998 6666 677999888877653
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 003148 655 --------QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTN 693 (844)
Q Consensus 655 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 693 (844)
+.++++.+.++++++++|++..+|..+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.13 E-value=8.7e-06 Score=71.80 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
..|..+...+.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|++.+++..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3466677777777778888888877777 56665 4566677777777777777777777765
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=1.3e-05 Score=68.24 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChHHHHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP---NDVIWGSLL 648 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p---~~~~~~~ll 648 (844)
..+..+...+...|++++|..+|+++.+ ..| +...+..+...|.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ---LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3455555566666666666666666665 223 2455666777777777777777777766 3344 366788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 003148 649 AACQKH-QNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 649 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..+... |+.++|.+.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 899999999999988888764
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.08 E-value=9.8e-06 Score=72.30 Aligned_cols=97 Identities=12% Similarity=-0.065 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHH
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAA 650 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 650 (844)
..+..+...+...|++++|...|+...+ ..|+ ...|..+..+|...|++++|...+++. ...| +...|..+...
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4455555555666666666666666555 2233 445666666666667777776666665 3334 45677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 003148 651 CQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888876
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=5e-06 Score=75.00 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC-CCcchHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVS-PQIVHYGCMVDL 618 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~ 618 (844)
.|......+.+.|++++|+..|++.++ +.|+...- ++ .... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 455566667777777777777777777 55551000 00 0000 001144444555
Q ss_pred HHhcCChHHHHHHHHhC--------CCCCCh-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 619 LGRAGLLGEALDLIKSM--------PVEPND-VIW----GSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..++++++++|++.+.+--+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55555555555444443 347864 488 8999999999999999999999999999987665444
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=9.1e-06 Score=70.95 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=61.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHH
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQ 652 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 652 (844)
+..+...+...|++++|...|+++.+ ..|+ ...|..+..++.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555566666666666666665 3343 555666666777777777777777666 4445 4557777878888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 003148 653 KHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 653 ~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
..|+.++|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888754
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=2.3e-05 Score=68.78 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=78.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHH
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK-------SGVHVL 680 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 680 (844)
..+..+...+...|++++|...+++. ...| +..+|..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777788888888888888876 3334 56678888888899999999999999999988876 678889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=3.5e-06 Score=73.15 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=61.2
Q ss_pred hcCChHHHHHHHHhC-CC---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 621 RAGLLGEALDLIKSM-PV---EP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 621 ~~g~~~eA~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
..|++++|++.|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777766 44 24 34577777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhC
Q 003148 696 RVRLQMKEQ 704 (844)
Q Consensus 696 ~~~~~m~~~ 704 (844)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777653
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.03 E-value=4.4e-05 Score=73.26 Aligned_cols=94 Identities=11% Similarity=-0.050 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-PVEP-N----------------DVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
.+..+...+.+.|++++|.+.|++. ...| + ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555556666666666666554 2222 1 26788888899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 673 EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 673 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+++..+..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00019 Score=73.87 Aligned_cols=176 Identities=10% Similarity=0.074 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc-HHHHHHH
Q 003148 523 PQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN--GEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGL-VNQGWHL 595 (844)
Q Consensus 523 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~-~~~a~~~ 595 (844)
++++..+++.+. .++..+|+.-.-.+...|+ +++++++++++++ ..|.. ..|..-...+.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666666555 4566777776666666663 6788888888887 45544 566665556666666 5788888
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhc----
Q 003148 596 FRSMTDIHGVSPQ-IVHYGCMVDLLGRA--------------GLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKH---- 654 (844)
Q Consensus 596 ~~~m~~~~~~~p~-~~~~~~li~~~~~~--------------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---- 654 (844)
++.+.+ ..|+ ...|+....++.+. +.++++++++++. ...| |...|+-+-+.+...
T Consensus 168 ~~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 888777 3343 55566665555554 4577888888776 3445 667887666555544
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HHcCCchHHHHHHHHHHh
Q 003148 655 -------QNVDIAAYAAERITELDPEKSGVHVLLSNIY---ASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 655 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 703 (844)
+.++++++.++++++++|++.-.+..++.+. ...|..++....+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3578888889999999998743333332221 134666677777777665
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=9e-06 Score=74.60 Aligned_cols=93 Identities=15% Similarity=0.042 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM----PVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPE------KSG 676 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 676 (844)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555556666666666655554 10111 335666777777888888888888888765322 134
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 677 VHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 677 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888999999999999998887764
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.98 E-value=0.00036 Score=71.80 Aligned_cols=191 Identities=11% Similarity=0.073 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcC--CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 003148 488 LDLAKWIYAYIEKNGIHCDMQLATALVDMFARCG--DPQRAMQVFRRME---KRDVSAWTAAIGAMAMEGN-GEQAVELF 561 (844)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 561 (844)
++.+..++..+.... +.+..+|+--...+.+.| .++++..+++.+. .+|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566677777777654 335666666666666667 4889999998887 5677889888888888888 58999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhcc--------------CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc---
Q 003148 562 NEMLRQGIKPDS-IVFVGVLTACSHG--------------GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRA--- 622 (844)
Q Consensus 562 ~~m~~~g~~p~~-~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--- 622 (844)
+++++ ..|+. ..|+.....+.+. +.++++++++..... ..|+ ...|+.+-.++.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 99998 56655 5565554444433 568899999999987 5565 66777666666665
Q ss_pred --------CChHHHHHHHHhC-CCCCChHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 003148 623 --------GLLGEALDLIKSM-PVEPNDVIWGSLLAAC-----QKHQNVDIAAYAAERITELDPEKSGVHVLLSNIY 685 (844)
Q Consensus 623 --------g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 685 (844)
+.++++++.++++ ...||. .|.-+..+. ...|..++....+.++.+++|...+.|.-|..-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 5688999999988 677876 565433332 2357788899999999999998887777665443
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.2e-05 Score=84.56 Aligned_cols=187 Identities=7% Similarity=-0.042 Sum_probs=128.1
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChh-
Q 003148 517 FARCGDPQRAMQVFRRMEKR-----D---------------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ-GIKPDSI- 574 (844)
Q Consensus 517 y~k~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~- 574 (844)
+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|.+.+.++... +..++..
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 44566666666666655411 0 123667888899999999999988887652 1122221
Q ss_pred ---HHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC
Q 003148 575 ---VFVGVLTACSHGGLVNQGWHLFRSMTDIH---GVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-----P--VEPN 640 (844)
Q Consensus 575 ---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-----~--~~p~ 640 (844)
....+...+...|..+++..+++...... +..+. ...+..++..|...|++++|.+++++. . -+|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 22333334556788999999988876522 22222 446778899999999999999998876 1 1222
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 641 -DVIWGSLLAACQKHQNVDIAAYAAERITELDPE---K----SGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 641 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
..++..++..|...|++++|...+++++...+. + ...+..++.++...|+|++|.+.+....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 347778888899999999999999999875432 2 13566778888899999999888776643
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=5.6e-05 Score=66.41 Aligned_cols=99 Identities=11% Similarity=-0.007 Sum_probs=61.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hHHHHHHHHH
Q 003148 580 LTACSHGGLVNQGWHLFRSMTDIHGVSPQI----VHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN----DVIWGSLLAA 650 (844)
Q Consensus 580 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~ 650 (844)
...+...|++++|...|+.+.+ ..|+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLE---LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3344455555555555555554 12321 24555666666666666666666665 22333 3456677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 651 CQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 651 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
+...|+.++|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888889999999998888888876544433
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=1.2e-05 Score=74.36 Aligned_cols=76 Identities=18% Similarity=0.049 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS-GVHVLLSNI 684 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 684 (844)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....|..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888899999999888887 4555 466888899999999999999999999999999987 445555443
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.3e-05 Score=84.34 Aligned_cols=147 Identities=10% Similarity=-0.008 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
..|..+...+.+.|++++|+..|++.++ ..|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677788888999999999999887 5666542 234455555443321 1267788889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHHcCCchHHH
Q 003148 619 LGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNI-YASAGKWTNVA 695 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~ 695 (844)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 566888888899999999999999999999999998888888888 44567788888
Q ss_pred HHHHHHHhCC
Q 003148 696 RVRLQMKEQG 705 (844)
Q Consensus 696 ~~~~~m~~~~ 705 (844)
+.+++|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888886543
No 184
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.96 E-value=2.2e-05 Score=80.19 Aligned_cols=103 Identities=12% Similarity=-0.076 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hHHHHHHHH
Q 003148 573 SIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP-QIVHYGCMVDLLGRAGLLGEALDLIKSM-PVEPN-DVIWGSLLA 649 (844)
Q Consensus 573 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~ 649 (844)
...+..+...+...|++++|...|++..+ ..| +...|..+...|.+.|++++|++.+++. ...|+ ...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677778888888999999999988887 445 3667888888888999999999888886 56664 557888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 650 ACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 650 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
++...|++++|+..++++++++|+++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 88888999999999999988888765443
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=1.5e-05 Score=70.12 Aligned_cols=113 Identities=7% Similarity=-0.007 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDL 618 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 618 (844)
.|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|..+++++.+.. |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 455555556666666666666666555 23332 344444444555555555555555444311 10
Q ss_pred HHhcCChHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 619 LGRAGLLGEALDLIKSMPVEPN----DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
..++ ..+|..+...+...|++++|...++++++..| ++.....+..++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0112 44666777777788888888888888888877 4555555554443
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=8.9e-06 Score=85.64 Aligned_cols=113 Identities=7% Similarity=-0.077 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKH 654 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 654 (844)
.+..+...+...|++++|...|++..+ +.|+.. .+...|+.+++...+. ...|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 355667788899999999999999877 334422 2334455555554442 23788888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=6e-06 Score=71.61 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=60.6
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 003148 586 GGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAY 662 (844)
Q Consensus 586 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 662 (844)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666666666551000232 455666677777777777777777766 3344 45677778888888888999999
Q ss_pred HHHHHHhcCCCCCchHH
Q 003148 663 AAERITELDPEKSGVHV 679 (844)
Q Consensus 663 ~~~~~~~~~p~~~~~~~ 679 (844)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999888888765443
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=3.4e-05 Score=84.74 Aligned_cols=122 Identities=9% Similarity=0.009 Sum_probs=84.9
Q ss_pred hccCcHHHHHHHHHHhHhhcC--C---CCC-cchHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-HHHHHH
Q 003148 584 SHGGLVNQGWHLFRSMTDIHG--V---SPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM---------PVEPND-VIWGSL 647 (844)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~l 647 (844)
...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555555555443211 1 122 345666666677777777776666554 334554 378888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 648 LAACQKHQNVDIAAYAAERITE-----LDPEKSGV---HVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
...|..+|++++|+..++++++ +.|++|.+ ...|..++...|++++|+.++.++++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999986 57877654 4578888999999999999999998864
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.90 E-value=2.8e-05 Score=82.78 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 003148 539 SAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVD 617 (844)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 617 (844)
..|..+...+.+.|++++|++.|++.++ +.|+.. ..-.. +...+ ..|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~-------~~~~~---~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAED-------ADGAK---LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCH-------HHHGG---GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccCh-------HHHHH---HHHHHHHHHHHHHH
Confidence 4577777888888888888888888776 111110 00001 11111 2232 567888899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 6666 46688889999999999999999999999999999999999999998888887765
Q ss_pred H
Q 003148 696 R 696 (844)
Q Consensus 696 ~ 696 (844)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 190
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.86 E-value=0.00027 Score=73.12 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcc-C-cHHHH
Q 003148 520 CGDPQRAMQVFRRME---KRDVSAWTAAIGAMAMEG-NGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHG-G-LVNQG 592 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~-g-~~~~a 592 (844)
.+..++|+++++.+. ..+...|+.--..+...| .+++++++++.++. ..|.. ..|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 345567888888776 446778998888888888 59999999999998 77877 4566655555555 6 78999
Q ss_pred HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChH--------HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC-----
Q 003148 593 WHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLG--------EALDLIKSM-PVEP-NDVIWGSLLAACQKHQN----- 656 (844)
Q Consensus 593 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~--------eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----- 656 (844)
+++++.+.+ ..|. ...|+....++.+.|+++ +++++++++ ...| |...|+.........+.
T Consensus 145 L~~~~k~L~---~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLL---PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTS---SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 999999987 4454 556766666676666666 899999888 4445 77799988888877775
Q ss_pred --HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc
Q 003148 657 --VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKW 691 (844)
Q Consensus 657 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 691 (844)
++++++.++++++++|+|.+++..+..++.+.|+-
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999998888888775
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=5.8e-05 Score=80.27 Aligned_cols=111 Identities=8% Similarity=-0.041 Sum_probs=84.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHHHHHHHHh
Q 003148 575 VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGSLLAACQK 653 (844)
Q Consensus 575 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~ 653 (844)
.+..+...+...|++++|+..|++..+. .+.. ...-..+++. ...| +..+|..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 4666777777888888888888777661 1110 0001111111 1233 45688889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.83 E-value=5.5e-05 Score=83.20 Aligned_cols=64 Identities=9% Similarity=-0.041 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999998875
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=5.9e-05 Score=68.96 Aligned_cols=132 Identities=15% Similarity=0.001 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCh----hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cch
Q 003148 541 WTAAIGAMAMEGNGEQAVELFNEMLRQGIK-PDS----IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVH 611 (844)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 611 (844)
+..+...|...|++++|+..+++.++.... ++. .++..+...+...|++++|..++++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444555555555555555554431100 111 24445555566666666666666665442111111 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003148 612 YGCMVDLLGRAGLLGEALDLIKSM-------PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDP 672 (844)
Q Consensus 612 ~~~li~~~~~~g~~~eA~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 672 (844)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|+.++|...+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 556666677777777777766654 1111 123566677778888899999988888887543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.74 E-value=6e-05 Score=64.83 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=67.1
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 627 EALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 627 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666665 4455 56788889899999999999999999999999999999999999999999999999999888764
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=1.5e-05 Score=71.76 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=66.6
Q ss_pred HhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 003148 620 GRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQN----------VDIAAYAAERITELDPEKSGVHVLLSNIYAS 687 (844)
Q Consensus 620 ~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 687 (844)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666665 3444 45566666666665554 5699999999999999999999999999998
Q ss_pred cC-----------CchHHHHHHHHHHhCC
Q 003148 688 AG-----------KWTNVARVRLQMKEQG 705 (844)
Q Consensus 688 ~g-----------~~~~a~~~~~~m~~~~ 705 (844)
.| ++++|.+.+++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988753
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.00011 Score=61.44 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999999999999999999999988754
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00017 Score=78.80 Aligned_cols=158 Identities=9% Similarity=0.005 Sum_probs=118.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCc
Q 003148 546 GAMAMEGNGEQAVELFNEMLRQGIKPDS----------------IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI 609 (844)
Q Consensus 546 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 609 (844)
..+.+.|++++|++.|.++++....... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999984322111 136788899999999999999999988744333332
Q ss_pred ----chHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 003148 610 ----VHYGCMVDLLGRAGLLGEALDLIKSM-------PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELD------ 671 (844)
Q Consensus 610 ----~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 671 (844)
...+.+...+...|+.++|.+++++. ...+. ..++..|...+...|++++|...+++++..-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344455556778999999888765 22233 4477888889999999999999999988631
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 672 PEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 672 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|....++..++.+|...|+|++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22235788999999999999999999988764
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=4.3e-05 Score=64.99 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK------SGVHVL 680 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 680 (844)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667778888888888888888877 4445 56788888889999999999999999999999998 667788
Q ss_pred HHHHHHHcCCchHHHHHH
Q 003148 681 LSNIYASAGKWTNVARVR 698 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~ 698 (844)
++.++...|++++|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 888888888877766544
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.0002 Score=78.59 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=88.7
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHH
Q 003148 618 LLGRAGLLGEALDLIKSM---------PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKSG---VHV 679 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 679 (844)
.+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+..++++++ +.|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 233443 3889999999999999999999999986 4666654 677
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 003148 680 LLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRD 750 (844)
Q Consensus 680 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 750 (844)
.|+.+|...|++++|..++++..+-.. +. .| ..||...++..++.+...++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VT----------------HG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------TC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HH----------------hC-CCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998875311 11 12 2499999988888777655543
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00017 Score=58.51 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=64.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYA 686 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 686 (844)
...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777777888888888887776 3334 46678888888899999999999999999999999888888888887
Q ss_pred HcC
Q 003148 687 SAG 689 (844)
Q Consensus 687 ~~g 689 (844)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.0002 Score=77.33 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=80.6
Q ss_pred HHhcCChHHHHHHHHhC------CCCC---C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHH
Q 003148 619 LGRAGLLGEALDLIKSM------PVEP---N-DVIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKS---GVHVL 680 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 680 (844)
+.+.|++++|++++++. -+.| + ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455555555555443 1222 2 23778888888888999999998888886 455555 46778
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 003148 681 LSNIYASAGKWTNVARVRLQMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLR 749 (844)
Q Consensus 681 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 749 (844)
|+.+|...|++++|..++++..+-- .+. .| ..||...+++..|.+...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~-~~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM-RVT----------------HG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHH----------------TC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH-HHh----------------cC-CCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887631 111 12 249999999999998887775
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=4.8e-05 Score=68.38 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=60.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcH----------HHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLV----------NQGWHLFRSMTDIHGVSPQ-IVHYGCMV 616 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p~-~~~~~~li 616 (844)
.+.+++++|++.+++.++ ..|+. ..|..+..++...|.+ ++|+..|++..+ +.|+ ...|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 355566777777777776 55654 4555566666665543 345555554444 3343 33444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 003148 617 DLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGV 677 (844)
Q Consensus 617 ~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 677 (844)
.+|...|++ .|+.. ...|++++|+..++++++++|++..+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 444443332 22221 01258999999999999999998533
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.00057 Score=76.87 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=122.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCc----------HHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 003148 551 EGNGEQAVELFNEMLRQGIKPDSI-VFVGVLTACSHGGL----------VNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDL 618 (844)
Q Consensus 551 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 618 (844)
....++|++.++++++ +.|+.. .|+.--.++.+.|. ++++++.++.+.+ ..|. ...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3456789999999999 889885 46655556666666 9999999999988 4455 6678888888
Q ss_pred HHhcC--ChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-----
Q 003148 619 LGRAG--LLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQ-NVDIAAYAAERITELDPEKSGVHVLLSNIYASA----- 688 (844)
Q Consensus 619 ~~~~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 688 (844)
+.+.| ++++|+++++++ ...| |..+|+.-.......| ..+++.+.++++++.+|+|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 779999999999 5555 6779999888888888 899999999999999999999999999998874
Q ss_pred ---------CCchHHHHHHHHHHh
Q 003148 689 ---------GKWTNVARVRLQMKE 703 (844)
Q Consensus 689 ---------g~~~~a~~~~~~m~~ 703 (844)
++++++.+.++...+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 557888888777653
No 204
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.40 E-value=0.00097 Score=69.86 Aligned_cols=394 Identities=12% Similarity=0.059 Sum_probs=225.7
Q ss_pred CcchhhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHH
Q 003148 63 KPSYISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFP 142 (844)
Q Consensus 63 ~~~~~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 142 (844)
.+.+|..|-.++...|. +.+|...|= ...|...|..+|.+..+.|.+++-+..+...++. .-++..=+
T Consensus 53 ~p~VWs~LgkAqL~~~~---v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGM---VKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp CCCCSSSHHHHTTTSSS---CTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred CccHHHHHHHHHHccCc---hHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 55678878878777777 777766554 2346667788888888888888888776555543 33455567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---------------------
Q 003148 143 FVLNACTKSSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSE--------------------- 201 (844)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------------------- 201 (844)
.|+-+|++.+++.+-..... .||+.-.....+-+...|.++.|+-+|..+..
T Consensus 121 eLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888877655333221 35554445566666777777777777776642
Q ss_pred ---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHhCC-CcchhHH
Q 003148 202 ---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACAKLQNLELGDRVCAYIDELGM-KANALMV 277 (844)
Q Consensus 202 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~ 277 (844)
.++.+|-.+-.+|+..+.+.-|.-.--.++ +.| .....++.-|-..|.+++-..+++.-. |+ .....++
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmF 266 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMF 266 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHH
Confidence 366788888888888888776654433333 112 223345556667777777777776654 33 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC----C-------CceehHHHHHHHHHcCChHHHHHHH-------------HHHHh
Q 003148 278 NALVDMYMKCGAVDTAKQLFGECKD----R-------NLVLCNTIMSNYVRLGLAREALAIL-------------DEMLL 333 (844)
Q Consensus 278 ~~Li~~y~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~ 333 (844)
+-|.-.|+|- +.++-.+-++..-. | ....|.-++-.|.+-.+++.|.... .+...
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~ 345 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 345 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH
Confidence 8888889887 34444444433222 2 3457999999999999998876431 11111
Q ss_pred cCCCCChhhHHHH---------------HHHHhhcCChhhHHHHHHHHHH----------hCCCchhhHHHHHHHHHHHc
Q 003148 334 HGPRPDRVTMLSA---------------VSASAQLGDLLCGRMCHGYVLR----------NGLEGWDSICNTMIDMYMKC 388 (844)
Q Consensus 334 ~g~~p~~~t~~~l---------------l~~~~~~~~~~~a~~i~~~~~~----------~g~~~~~~~~~~Li~~y~~~ 388 (844)
. ..|...|-.. |.++...=|...+.+++...-. ..-..+..+-.++-+.|...
T Consensus 346 K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 346 K--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp G--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred H--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 0 1233333333 3333222222222222211100 00112334555666666666
Q ss_pred CCHHHHHHHHhhcCCCCcchHHH-------------HHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHH
Q 003148 389 GKQEMACRIFDHMSNKTVVSWNS-------------LIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEE 455 (844)
Q Consensus 389 g~~~~A~~~f~~m~~~~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 455 (844)
.+++.-+.-.+.-..-|...... -...|.++++++++.++. +.-..|.-.|..-+.+|+.+-
T Consensus 424 EDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~-----KkDklykDAietAa~S~~~el 498 (624)
T 3lvg_A 424 EDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC-----KKDSLYKDAMQYASESKDTEL 498 (624)
T ss_dssp TCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS-----STTCCTTGGGTTTTTCCCTTH
T ss_pred hhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH-----HhcccHHHHHHHHHHcCCHHH
Confidence 66665555444333322222111 123455666666655443 223345555566666777777
Q ss_pred HHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHH
Q 003148 456 AMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKW 493 (844)
Q Consensus 456 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 493 (844)
|.++++-..+.| +...|...|-.|...=+++.+.+
T Consensus 499 aeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 499 AEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 777766666544 44456666666666555544433
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.0006 Score=55.72 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=59.7
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 639 PNDVIWGSLLAACQKHQN---VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+|+..|..+..++...++ .++|...++++++++|+++.....+++++.+.|++++|...++++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888888765544 6999999999999999999999999999999999999999999998864
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.38 E-value=0.00024 Score=76.62 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 003148 642 VIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKS---GVHVLLSNIYASAGKWTNVARVRLQMKEQGIRKLPGSS 713 (844)
Q Consensus 642 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 713 (844)
.+++.|..+|...|++++|+..++++++ +.|+++ ..+..|+.+|...|++++|..++++..+--. +.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~---- 415 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VA---- 415 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HH----
Confidence 3778888888888888888888888886 456655 4677899999999999999999998876311 11
Q ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHH
Q 003148 714 SIEVNGKVHEFTSGDESHPEMNNISSMLR 742 (844)
Q Consensus 714 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~ 742 (844)
.| ..||...+++..|+
T Consensus 416 ------------lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 416 ------------HG-KDHPYISEIKQEIE 431 (433)
T ss_dssp ------------TC-TTCHHHHHHHHHHH
T ss_pred ------------cC-CCChHHHHHHHHHh
Confidence 12 24999888776654
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00049 Score=58.22 Aligned_cols=65 Identities=9% Similarity=-0.092 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 55678889999999999999999999999999999999999999999999999999999998865
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0026 Score=65.60 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=31.0
Q ss_pred CCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCh-hHHHHHHHHH
Q 003148 535 KRDVSAWTAAIGAMA--MEGN---GEQAVELFNEMLRQGIKPDS-IVFVGVLTAC 583 (844)
Q Consensus 535 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 583 (844)
..+...|...+.+.. ..++ ..+|+.+|++.++ ..|+. ..+..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 456777777776643 2333 4789999999999 78986 3444444444
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.27 E-value=0.0015 Score=58.09 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCC
Q 003148 640 NDVIWGSLLAACQK----HQNVDIAAYAAERITELDPEKSGVHVLLSNIYAS----AGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 640 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 705 (844)
+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34444444444444 45666666666666654 345566677777776 677777777777766654
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.23 E-value=0.0015 Score=52.62 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 641 DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 641 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999988764
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.12 E-value=0.00075 Score=57.73 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=49.6
Q ss_pred HHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 592 GWHLFRSMTDIHGVSPQ-IVHYGCMVDLLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
+...|++..+ ..|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|+.++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444 2333 445555666666666666666666655 3334 35567777777777888888888888888
Q ss_pred hcCCCC
Q 003148 669 ELDPEK 674 (844)
Q Consensus 669 ~~~p~~ 674 (844)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.95 E-value=0.011 Score=52.45 Aligned_cols=110 Identities=12% Similarity=-0.002 Sum_probs=51.0
Q ss_pred cCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh----cCCHHH
Q 003148 450 ENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR----CGDPQR 525 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~ 525 (844)
.+++++|++.|++..+.| .|+.. +-..+.....++.|...+....+.| +...+..|..+|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 345666666666666655 22221 3333444444555555555554443 33344444444444 444444
Q ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 003148 526 AMQVFRRME-KRDVSAWTAAIGAMAM----EGNGEQAVELFNEMLRQ 567 (844)
Q Consensus 526 A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 567 (844)
|.+.|++.. ..+..++..|...|.. .++.++|+++|++..+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 444444433 2233444444444444 44444444444444443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0033 Score=67.66 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=48.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhC---------CCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 003148 610 VHYGCMVDLLGRAGLLGEALDLIKSM---------PVEPNDV-IWGSLLAACQKHQNVDIAAYAAERITE-----LDPEK 674 (844)
Q Consensus 610 ~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 674 (844)
.+++.|..+|...|++++|+.+++++ +..|+.. +++.|...|..+|++++|+..++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555666666666666666665554 3345543 788888889999999999999998886 56777
Q ss_pred CchH
Q 003148 675 SGVH 678 (844)
Q Consensus 675 ~~~~ 678 (844)
|.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.89 E-value=0.0046 Score=54.83 Aligned_cols=66 Identities=5% Similarity=-0.065 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 639 PNDVIWGSLLAACQKHQ---NVDIAAYAAERITELD-P-EKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
++..+...+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|++.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56777777777777776 6668888888888877 6 44567788888888888888888888888764
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.88 E-value=0.0027 Score=52.66 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=46.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 537 DVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
+...|..+...|.+.|++++|+..|++.++ ..|+. ..|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777888888888887777 55654 5667777777777888888877777765
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0061 Score=65.75 Aligned_cols=70 Identities=20% Similarity=0.038 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM---------PVEPND-VIWGSLLAACQKHQNVDIAAYAAERITE-----LDPEKS 675 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 675 (844)
+++.|..+|...|++++|+.+++++ +..|+. .+++.|...|..+|++++|+..++++++ +.|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555555555555443 334543 3678888888888999999988888886 577776
Q ss_pred chHHH
Q 003148 676 GVHVL 680 (844)
Q Consensus 676 ~~~~~ 680 (844)
.+-..
T Consensus 411 ~~~~~ 415 (429)
T 3qwp_A 411 LIEDL 415 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.003 Score=52.02 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 615 MVDLLGRAGLLGEALDLIKSM-PVEP-NDV-IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 615 li~~~~~~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
.+..+.+.|++++|.+.++++ ...| +.. .|..+..++...|++++|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555566666666666555 3333 334 555555555666666666666666666666655444
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.75 E-value=0.0083 Score=61.89 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCCChhHHHHHHHHHh--cc---CcHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH----hcC-------ChHHHHHH
Q 003148 569 IKPDSIVFVGVLTACS--HG---GLVNQGWHLFRSMTDIHGVSPQ-IVHYGCMVDLLG----RAG-------LLGEALDL 631 (844)
Q Consensus 569 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~eA~~~ 631 (844)
...|...|...+.+.. .. ....+|+.+|+++.+ +.|+ ...|..+.-+|. ..+ .+.+|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445567777776543 22 346899999999998 7788 345554333332 111 11233333
Q ss_pred HHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 632 IKSMPVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 632 ~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
...+...| +..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33333333 6778888777777789999999999999999974 5677899999999999999999998887653
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.67 E-value=0.0065 Score=49.90 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=58.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCC-cc-hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-HHHHHHHHHHHhc
Q 003148 579 VLTACSHGGLVNQGWHLFRSMTDIHGVSPQ-IV-HYGCMVDLLGRAGLLGEALDLIKSM-PVEPND-VIWGSLLAACQKH 654 (844)
Q Consensus 579 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 654 (844)
....+...|++++|...|+++.+ ..|+ .. .+..+..+|.+.|++++|.+.|++. ...|+. ..|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 44566777888888888888877 3454 45 6777788888888888888888776 444543 23311
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 003148 655 QNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~ 675 (844)
+.++++...++++...+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 456667777777777666654
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.14 E-value=5.6e-05 Score=78.96 Aligned_cols=259 Identities=11% Similarity=0.080 Sum_probs=179.7
Q ss_pred ceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchhhHHHHHHHH
Q 003148 305 LVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWDSICNTMIDM 384 (844)
Q Consensus 305 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 384 (844)
...|..+..++.+.++..+|++.|-+. -|...|..++.++.+.|..++-...+....+.. .++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 356888888888888887777665332 244567778888888888877777666655543 234455789999
Q ss_pred HHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCChHHHHHHHHHHH
Q 003148 385 YMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENMFEEAMELFRVML 464 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 464 (844)
|+|.+++.+-.+++ ..||+.-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++
T Consensus 126 yAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK-- 195 (624)
T 3lvg_A 126 LAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK-- 195 (624)
T ss_dssp HHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--
T ss_pred HHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999876543322 23788888889999999999999988886554 477888889999999888765333
Q ss_pred hCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcC---CCCHhHH
Q 003148 465 SERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRME---KRDVSAW 541 (844)
Q Consensus 465 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~ 541 (844)
.-+..||.-+-.+|...+.+..|...--.++- .+.-...|+..|-+.|.+++-+.+++... ....-.|
T Consensus 196 ----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 196 ----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp ----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred ----cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence 23667899999999988887776554333322 22223458889999999999999998765 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
+-|.-.|++. ++++-.+.++..-. .+-.--++.+|.+...|.++.-++.
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~s------riNipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWS------RVNIPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSS------SSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHH------hccHHHHHHHHHHHhhHHHHHHHHh
Confidence 9898888887 45555554443211 1112235667777777766665554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.013 Score=57.76 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred hHHHHHHHHhC-CCCCC---hHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHHc-CCchH
Q 003148 625 LGEALDLIKSM-PVEPN---DVIWGSLLAACQK-----HQNVDIAAYAAERITELDPEK-SGVHVLLSNIYASA-GKWTN 693 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 693 (844)
..+|...+++. .+.|+ ...|..|...|.+ -|+.++|++.++++++++|+. ...++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666655 55665 4477777777777 489999999999999999975 88999999998884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003148 694 VARVRLQMKEQGIRKLPG 711 (844)
Q Consensus 694 a~~~~~~m~~~~~~~~~~ 711 (844)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876554454
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.84 E-value=0.51 Score=40.10 Aligned_cols=139 Identities=8% Similarity=0.064 Sum_probs=90.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 003148 550 MEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEAL 629 (844)
Q Consensus 550 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 629 (844)
-.|..++..++..+..... +..-++-++.-....-+-+-..++++..-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 4566777777777766521 2222222222222223334444455544442222 2356666666
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 003148 630 DLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGIR 707 (844)
Q Consensus 630 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 707 (844)
.-+-.++. +.......+.....+|.-++-.+++..++.-+|-++...+-++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66655542 44445666778889999999999999877777777889999999999999999999999999999874
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.54 E-value=0.051 Score=44.01 Aligned_cols=68 Identities=9% Similarity=-0.037 Sum_probs=52.1
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 607 PQIVHYGCMVDLLGRAGL---LGEALDLIKSM-PVEPN-DVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+.+.|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 346667777777765544 68888888887 56664 4567777778888999999999999999999884
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.46 E-value=0.05 Score=45.23 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-----C----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 003148 613 GCMVDLLGRAGLLGEALDLIKSM-----P----VEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLL 681 (844)
Q Consensus 613 ~~li~~~~~~g~~~eA~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 681 (844)
-.|+..+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555555555555555443 0 112456888899999999999999999999999999997665444
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.28 Score=44.59 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4677899999999999999999999987654 4455555666777766554
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERI 667 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 667 (844)
+-+.... .| -++.....+.-.|+++++.+++.+.+.-|.... ..+.+|-.+.|.++.+++
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 4443332 11 344555566678999999999888764332221 123467777777776554
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.30 E-value=0.44 Score=56.14 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=67.4
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 003148 515 DMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWH 594 (844)
Q Consensus 515 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 594 (844)
+....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 4456788999998887766 3567889999999999999999998887754 3344444555666655444
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCC
Q 003148 595 LFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMP 636 (844)
Q Consensus 595 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 636 (844)
+-+.... .| .++.-..+|.+.|++++|++++.+++
T Consensus 729 ~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4433333 11 23334455666666666666666553
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.11 E-value=0.04 Score=48.78 Aligned_cols=73 Identities=11% Similarity=0.020 Sum_probs=45.9
Q ss_pred CcchHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 608 QIVHYGCMVDLLGRAG---LLGEALDLIKSM-PVE-P--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 608 ~~~~~~~li~~~~~~g---~~~eA~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
+..+.-.+..++.++. +.+++..++++. ... | +...+..|.-+|.+.|++++|.+.++++++++|+|..+...
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3334444444444444 333444444443 111 3 23456667778899999999999999999999998644443
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.92 E-value=0.38 Score=56.69 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=55.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHHH
Q 003148 283 MYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRMC 362 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 362 (844)
.+..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3445677777777765553 335677777777777777777777776643 22333333334444443333
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 003148 363 HGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMS 402 (844)
Q Consensus 363 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 402 (844)
-......|. ++.-...|.++|++++|.+++.++.
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 333333221 1233344555666666666555543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.84 E-value=0.13 Score=43.83 Aligned_cols=65 Identities=6% Similarity=-0.087 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 639 PNDVIWGSLLAACQKHQNVD---IAAYAAERITELD-P-EKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|+..+-..+..++.+..+.. +|+.+++.++..+ | ..-.....|+-.+.+.|++++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444445555555544333 3666666666554 3 2223455666666677777777776666655
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.78 E-value=0.054 Score=53.46 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHhcCCCCH--hHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhc
Q 003148 520 CGDPQRAMQVFRRMEKRDV--SAWTAAIGA-MAME--GN------GEQAVELFNEMLRQGIKPD---SIVFVGVLTACSH 585 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 585 (844)
.|+..+-.+.+.++.+.++ ..|..++.+ ++.. |. ..+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444455555555554443 357666543 3332 32 3566677777777 6776 2466666666666
Q ss_pred -----cCcHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhc-CChHHHHHHHHhC
Q 003148 586 -----GGLVNQGWHLFRSMTDIHGVSPQ--IVHYGCMVDLLGRA-GLLGEALDLIKSM 635 (844)
Q Consensus 586 -----~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~-g~~~eA~~~~~~m 635 (844)
-|+.++|.++|++..+ +.|+ ..++..+.+.|++. |+.++|.+++++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3777777777777766 5552 55555566666653 6666666666654
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.61 E-value=0.51 Score=40.80 Aligned_cols=67 Identities=9% Similarity=-0.058 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 638 EPNDVIWGSLLAACQKHQ---NVDIAAYAAERITELDPEKS-GVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 638 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
.|+..+--.+..++.+.. +..+|+.+++.++..+|.+. .....|+-.|.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555555655544 45577778888887777433 34567777788888888888888877764
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.13 E-value=2.1 Score=38.78 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=66.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChhhHHH
Q 003148 282 DMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSASAQLGDLLCGRM 361 (844)
Q Consensus 282 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 361 (844)
+....+|+++.|.++.+++ .+...|..+.....+.|+++-|.+.|.+..+ |..++-.+...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887766 3456788888888888888888888887643 3344444445566555444
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 003148 362 CHGYVLRNGLEGWDSICNTMIDMYMKCGKQEMACRIFDHMSN 403 (844)
Q Consensus 362 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 403 (844)
+-......|- ++.-...+.-.|+++++.++|.+...
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4443333331 24444556667777777777766554
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.19 Score=57.41 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 648 LAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 648 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..-|...|+++.|+.+++++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456778999999999999999999999999999999999999999999998884
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.58 E-value=0.49 Score=39.00 Aligned_cols=65 Identities=12% Similarity=-0.065 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 640 NDVIWGSLLAACQKHQNVDIAAYAAERITELD-------PEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 640 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+..-...+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678888999999999999999999843 233457889999999999999999999988764
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.71 E-value=0.88 Score=38.63 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 003148 643 IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVL 680 (844)
Q Consensus 643 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 680 (844)
....|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34456668899999999999999999999998655443
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.48 E-value=0.72 Score=39.34 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 639 PNDVIWGSLLAACQKHQ---NVDIAAYAAERITELDPEK-SGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|...+--.+..++.+.. +..+|+.+++.++..+|.. -..+..|+-.+.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444433 4456667777777666632 33455666677777777777777776665
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.97 E-value=23 Score=39.51 Aligned_cols=288 Identities=10% Similarity=0.009 Sum_probs=144.6
Q ss_pred HHHHHHHHhC-CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 003148 361 MCHGYVLRNG-LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHIS 439 (844)
Q Consensus 361 ~i~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 439 (844)
++-..+.+.. .+....+-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+--.
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~---- 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT---- 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----
Confidence 3444444432 233334445666677778888888776666 3334444445566667777765554433322100
Q ss_pred cccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCc-hhHHhHHhhhHH
Q 003148 440 WNTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCD-MQLATALVDMFA 518 (844)
Q Consensus 440 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~ 518 (844)
.....+..-.+|..+.+.|...+...+.-+.. ....++...+..+...+ .++ ......++..+.
T Consensus 132 ---------~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~-al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~ 196 (618)
T 1qsa_A 132 ---------GKSQPNACDKLFSVWRASGKQDPLAYLERIRL-AMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN 196 (618)
T ss_dssp ---------SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH-HHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH
T ss_pred ---------CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh
Confidence 00122334445555555443322222222211 22234444444443322 222 223344444444
Q ss_pred hcCCHHHHHHHHHhcCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhH----HHHHHHHHhccCcHHH
Q 003148 519 RCGDPQRAMQVFRRMEKRDVSA---WTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIV----FVGVLTACSHGGLVNQ 591 (844)
Q Consensus 519 k~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~ 591 (844)
+-..+ ....... .++... ...-+.-+++ .+.+.|..++....+.+ ..+... ...+.......+...+
T Consensus 197 ~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~ 270 (618)
T 1qsa_A 197 NPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDE 270 (618)
T ss_dssp CGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHH
T ss_pred ChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChH
Confidence 33333 2232222 222211 1112223333 37899999999887643 223322 2233334444553556
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 003148 592 GWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSMPVEP-NDVIWGS-LLAACQKHQNVDIAAYAAERITE 669 (844)
Q Consensus 592 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 669 (844)
+...+..... ..++.....-.+..-.+.|+++.|...|+.|+..+ +..-|.- +..+....|+.++|...++++.+
T Consensus 271 ~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 271 QAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6667766544 22332223334444557899999999999996443 3233332 33466778999999999999975
Q ss_pred cCCCCCchHHHH
Q 003148 670 LDPEKSGVHVLL 681 (844)
Q Consensus 670 ~~p~~~~~~~~l 681 (844)
+ ..+|-.|
T Consensus 348 --~--~~fYg~l 355 (618)
T 1qsa_A 348 --Q--RGFYPMV 355 (618)
T ss_dssp --S--CSHHHHH
T ss_pred --C--CChHHHH
Confidence 3 2456555
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.75 E-value=1.2 Score=38.95 Aligned_cols=107 Identities=10% Similarity=0.098 Sum_probs=65.3
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCh-h---HHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 003148 535 KRDVSAWTAAIGAMAMEGNG------EQAVELFNEMLRQGIKPDS-I---VFVGVLTACSHGGLVNQGWHLFRSMTDIHG 604 (844)
Q Consensus 535 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~-~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 604 (844)
..|..+|-..+....+.|++ ++.+++|++.... ++|+. . .|..+.--|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 55677777777777777777 6666666666653 44442 1 1111111110
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 605 VSPQIVHYGCMVDLLGRAGLLGEALDLIKSM-PV-EPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 605 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
.+...++.++|.++|+.+ .. +--..+|-....--.++|++..|.+++.+++.+.|.+.
T Consensus 69 -------------~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 69 -------------ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -------------HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -------------HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 112235566666666655 11 11266787777777789999999999999999988753
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.50 E-value=13 Score=31.81 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=53.5
Q ss_pred HhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 003148 518 ARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFR 597 (844)
Q Consensus 518 ~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 597 (844)
.+||++......+-.+.. +..-....+......|+-++-.+++..+.. ..+|+......+.+||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 356666666666555532 233344456667777777777777777533 256677777777778888888888888777
Q ss_pred HhHh
Q 003148 598 SMTD 601 (844)
Q Consensus 598 ~m~~ 601 (844)
++-+
T Consensus 150 ~AC~ 153 (172)
T 1wy6_A 150 EACK 153 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.28 E-value=1.2 Score=38.92 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 654 HQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 654 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
.+|.++|..+|+.++.+...-+..|...+.--.+.|+.+.|++++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37999999999999988555556777777778899999999999999887653
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.15 E-value=58 Score=38.04 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=70.6
Q ss_pred cccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHH--hcCCHHHHHHHHHhcC-CCC-HhHHHH---HHHHHHhcCChH
Q 003148 483 GYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFA--RCGDPQRAMQVFRRME-KRD-VSAWTA---AIGAMAMEGNGE 555 (844)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--k~g~~~~A~~~~~~~~-~~~-~~~~~~---li~~~~~~g~~~ 555 (844)
...|+.+....++..+.+.. +..+...++-+.+ -.|+.+.+..+.+.+. ..| .+-|.+ +.-+|+-.|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 34456666666666555432 2222222333332 4466666665555544 223 223332 334556666766
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHH-HHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDS-IVFVGVL-TACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLL-GEALDLI 632 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~-~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~eA~~~~ 632 (844)
...++++.+.+. ++. +--.+++ -+....|..+.+.++++.+.+ + ..|.+..-.++.-+..-.|.. .+|.+.+
T Consensus 578 aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~-~-~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 578 AVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-S-HNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG-C-SCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 555677777652 222 2111222 133334544445555554443 2 233333333333333334432 5666676
Q ss_pred HhCCCCCChHHH
Q 003148 633 KSMPVEPNDVIW 644 (844)
Q Consensus 633 ~~m~~~p~~~~~ 644 (844)
..+.-.+|..+-
T Consensus 653 ~~L~~D~d~~Vr 664 (963)
T 4ady_A 653 DPLTKDPVDFVR 664 (963)
T ss_dssp HHHHTCSSHHHH
T ss_pred HHHccCCCHHHH
Confidence 666444554443
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.38 E-value=40 Score=33.97 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHH----HHHHhcCCCCChhhHHHHHHHHh
Q 003148 276 MVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAIL----DEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 276 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778899999999998643 234566778877766655 44456788899888777777776
Q ss_pred hcCChh-----hHHHHHHHHHHhC--CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 003148 352 QLGDLL-----CGRMCHGYVLRNG--LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKNG 420 (844)
Q Consensus 352 ~~~~~~-----~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 420 (844)
....-+ -..+...+-.+.| -..|+.....+...|.+.+++.+|+.-|-.-.++.+..+..++--+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 554322 1222333334444 34577788889999999999999999885322233356655555444443
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.54 E-value=44 Score=33.73 Aligned_cols=126 Identities=13% Similarity=0.045 Sum_probs=68.9
Q ss_pred HHHHhCCcccChhhHHhHHHHccccCc-----hHHHHHHHHHHHHhC--CCCchhHHhHHhhhHHhcCCHHHHHHHHHhc
Q 003148 461 RVMLSERIKVDRVTMVGVASACGYLGA-----LDLAKWIYAYIEKNG--IHCDMQLATALVDMFARCGDPQRAMQVFRRM 533 (844)
Q Consensus 461 ~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~ 533 (844)
+-..+.++++|..+...++..+..... ..-..+....-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 444445666666665555555544332 111222233334444 3447778888999999999999999988432
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 534 EKRDVSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 534 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.++....+..|+.-+.+.+...++ |...-.+++ -|.-.+++..|...++...+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 222235665555544443322111 111222223 34456788888887766654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.28 E-value=6.3 Score=44.95 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=40.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHh
Q 003148 548 MAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSM 599 (844)
Q Consensus 548 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 599 (844)
+...|+++-|+++.++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4557888888888888887 77776 68888888888888888888888776
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.19 E-value=13 Score=32.11 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 607 PQIVHYGCMVDLLGRAGLLG---EALDLIKSM-PVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~~---eA~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
|+..+--.+..++.++...+ +++.++++. ...| ......-|.-++.+.|++++|.+..+.+++.+|+|..+-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 33333334444455544332 344444443 1123 122444566689999999999999999999999986443
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.60 E-value=7.1 Score=33.27 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 003148 607 PQIVHYGCMVDLLGRAGLL---GEALDLIKSM-PVEP--NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVH 678 (844)
Q Consensus 607 p~~~~~~~li~~~~~~g~~---~eA~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 678 (844)
|+..+--.+..++.++... .+++.++++. ...| ....+--|.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3333333444455555433 2344444443 1123 233556667788899999999999999999999885443
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.18 E-value=33 Score=35.70 Aligned_cols=157 Identities=8% Similarity=0.021 Sum_probs=73.5
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChhHHH----
Q 003148 511 TALVDMFARCGDPQRAMQVFRRMEK--------RDVSAWTAAIGAMAME-GNGEQAVELFNEMLRQGIKPDSIVFV---- 577 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~---- 577 (844)
..|.+.|.+.|+.++..+++..... +....-..|+..+... +..+.-.++..+.++-. +-+..+|.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455666666666666666655431 1122344455555442 22333333433333210 01112231
Q ss_pred --HHHHHHhccCcHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHhC-----CCCCChHHHHH
Q 003148 578 --GVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ----IVHYGCMVDLLGRAGLLGEALDLIKSM-----PVEPNDVIWGS 646 (844)
Q Consensus 578 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-----~~~p~~~~~~~ 646 (844)
-++..|...|++.+|.+++..+.+...-..| .+.|..-+.+|...|++.++...+.+. .+.|++.+-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 3455666666666666666666553222111 334555556666666666666666544 12123322111
Q ss_pred H---HH-HHH-hcCCHHHHHHHHHHHH
Q 003148 647 L---LA-ACQ-KHQNVDIAAYAAERIT 668 (844)
Q Consensus 647 l---l~-~~~-~~g~~~~a~~~~~~~~ 668 (844)
+ .+ .+. ..+++..|...|-+++
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 11 233 4566666666555554
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.62 E-value=11 Score=33.57 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=60.0
Q ss_pred CCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHHhcCChHHHHHHHHhC--
Q 003148 567 QGIKPDS--IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQI-------VHYGCMVDLLGRAGLLGEALDLIKSM-- 635 (844)
Q Consensus 567 ~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~eA~~~~~~m-- 635 (844)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4555654 334445556666777777777666655433333332 24455666677777777776666653
Q ss_pred --CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 003148 636 --PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMK 702 (844)
Q Consensus 636 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 702 (844)
..-| +..+..++ .. .. ....-..+ +.+...-..++..|.+.|++++|..+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~-~~---~s-------s~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-GN---SA-------STPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc-cc---cC-------CCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1000 00000000 00 00 00000011 2222455678999999999999999987653
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.79 E-value=14 Score=29.37 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHh
Q 003148 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 333 (844)
.-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||+++|-++-.+ +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666666553 333333445566789999999999999999999999988664 67888888888877776
Q ss_pred cC
Q 003148 334 HG 335 (844)
Q Consensus 334 ~g 335 (844)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.10 E-value=59 Score=32.50 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=72.1
Q ss_pred HHHHHhCCcccChhhHHhHHHHccccC-----chHHHHHHHHHHHHhC--CCCchhHHhHHhhhHHhcCCHHHHHHHHHh
Q 003148 460 FRVMLSERIKVDRVTMVGVASACGYLG-----ALDLAKWIYAYIEKNG--IHCDMQLATALVDMFARCGDPQRAMQVFRR 532 (844)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 532 (844)
.+-..+.+++++..+...++..+.... ..+-.........+.| ...|+.....+...|.+.|++.+|+.-|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344444566666666655555543322 1222333333344443 234778888899999999999999998863
Q ss_pred cCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 533 MEKRDVSAWTAAIGAMAME---GNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 533 ~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
-...|...+..|+.-+.+. |...++--.+- .+++ -|.-.|++..|...|+...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3333455555555554444 44333211111 1222 24456788888888887765
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.41 E-value=12 Score=33.40 Aligned_cols=26 Identities=8% Similarity=-0.060 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 576 FVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 576 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
+..+..++...|.+..|..+|++..+
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444555555555555555555433
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.40 E-value=17 Score=29.10 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=46.9
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 632 IKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 632 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
+-.+.+-|++.+..+.+.||++-+|+..|.++++-+...-.+...+|-.+.. ++.-.+.+.|+
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq------------ElkPtl~ELGI 98 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ------------ELRPTLNELGI 98 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH------------HHHHHHHHHTC
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH------------HHhhHHHHhCC
Confidence 3344678999999999999999999999999999888755444455655432 45555556665
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.94 E-value=52 Score=31.81 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=91.2
Q ss_pred hHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCc----ccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc---c
Q 003148 68 SKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATL----FMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKF---T 140 (844)
Q Consensus 68 ~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~ 140 (844)
++.+...++.|+ ++..+.+++ ..+..+. .-++.|. .-+..|+.+ +++.+.+.|..++.. -
T Consensus 6 ~~~L~~A~~~g~---~~~v~~Ll~-----~g~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g 72 (285)
T 1wdy_A 6 NHLLIKAVQNED---VDLVQQLLE-----GGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADPVLRKKNG 72 (285)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHH-----TTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTC
T ss_pred chHHHHHHHcCC---HHHHHHHHH-----cCCCcccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCcccCCCC
Confidence 345555666676 666666665 3332221 1223333 233445543 344444555544432 1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-------------
Q 003148 141 FPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDVF--VENCLINFYGECGDIVDGRRVFDEMSERNVV------------- 205 (844)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~------------- 205 (844)
.+.+ ...+..|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-...+++.-..++..
T Consensus 73 ~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 73 ATPF-LLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp CCHH-HHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred CCHH-HHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccC
Confidence 2222 2223344443 344444555444321 1122334445667776666666654432211
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHc-CCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchh--HHHH
Q 003148 206 SWTSLICACARRDLPKEAVYLFFEMVEE-GIKPNSV---TMVCVISACAKLQNLELGDRVCAYIDELGMKANAL--MVNA 279 (844)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 279 (844)
.++.+. ..++.|+. ++++.+.+. |..++.. ..+.+.. .+..+......++...+.+.|..++.. ...+
T Consensus 148 g~t~L~-~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 148 GATALM-DAAEKGHV----EVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp CCCHHH-HHHHHTCH----HHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCcHHH-HHHHcCCH----HHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 122222 22334443 334444443 5444322 2222222 233444444456666666666554421 1223
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 003148 280 LVDMYMKCGAVDTAKQLFG 298 (844)
Q Consensus 280 Li~~y~~~g~~~~A~~~f~ 298 (844)
.+...++.|..+-+..+++
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3344455566666655555
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.61 E-value=65 Score=32.20 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHH----HHHHHhcCCCCChhhHHHHHHHHh
Q 003148 276 MVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAI----LDEMLLHGPRPDRVTMLSAVSASA 351 (844)
Q Consensus 276 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 351 (844)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345667778888999999988643 23456677887776665 344455688888887777777665
Q ss_pred hcCChh-hHHHHHHHHH----HhC--CCchhhHHHHHHHHHHHcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 003148 352 QLGDLL-CGRMCHGYVL----RNG--LEGWDSICNTMIDMYMKCGKQEMACRIFDHMSNKTVVSWNSLIAGLIKN 419 (844)
Q Consensus 352 ~~~~~~-~a~~i~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 419 (844)
....-+ .-..+...++ +.| -..|+.....+...|.+.|++.+|+.-|-.-...+...+..++--+.+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 533211 1223333333 333 2347788889999999999999999988743323455555555544444
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.52 E-value=4.6 Score=42.44 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 644 WGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 644 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
...++.++...|+.+++...++.++..+|-+...|..|..+|...|+..+|.+.|+...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677788888888888888888888888888888888888998888888877754
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.32 E-value=14 Score=29.39 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHHHHh
Q 003148 254 NLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDEMLL 333 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 333 (844)
.-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||+++|-++-.+ +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666666553 333333445566789999999999999999999999888654 77888888888878877
Q ss_pred cC
Q 003148 334 HG 335 (844)
Q Consensus 334 ~g 335 (844)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=74.78 E-value=58 Score=36.44 Aligned_cols=82 Identities=10% Similarity=0.073 Sum_probs=43.0
Q ss_pred ccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh---
Q 003148 443 MLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR--- 519 (844)
Q Consensus 443 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k--- 519 (844)
....+.-.|++|.|++.+.+. ...|.+.+...|.-+.-++- ...++..-. + .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 344455678888888877643 35566777666665544332 222211100 1 11 2224567777764
Q ss_pred cCCHHHHHHHHHhcCC
Q 003148 520 CGDPQRAMQVFRRMEK 535 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~~ 535 (844)
.++..+|.+.|--+..
T Consensus 369 ~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITL 384 (661)
T ss_dssp TTCHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHhc
Confidence 5788888888776643
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.83 E-value=78 Score=33.59 Aligned_cols=186 Identities=11% Similarity=0.100 Sum_probs=115.5
Q ss_pred cCChHHHHHHHHHHHhC-----CcccChhhHHhHHHHccccCchHHHHHHHHHHHHh-CCCCchh--HHhHHhhhHHhcC
Q 003148 450 ENMFEEAMELFRVMLSE-----RIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKN-GIHCDMQ--LATALVDMFARCG 521 (844)
Q Consensus 450 ~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~--~~~~li~~y~k~g 521 (844)
.|++++|++.+..+.+. ...........++..|...++++...+....+.+. |..+... ..+.+++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37889998877666432 23334556777888899999998887776655443 3322211 1122233333333
Q ss_pred CHH--HHHHHHHhcC---CCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCh---hHHHHHHHHHh
Q 003148 522 DPQ--RAMQVFRRME---KRD-------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQ--GIKPDS---IVFVGVLTACS 584 (844)
Q Consensus 522 ~~~--~A~~~~~~~~---~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~~ 584 (844)
..+ .-..+.+... +.- ......|...|...|++.+|..++.++... |..+.. ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 2233333332 111 112355778888999999999999998753 322222 34566677888
Q ss_pred ccCcHHHHHHHHHHhHhh-cCCC--CC--cchHHHHHHHHHhcCChHHHHHHHHhC
Q 003148 585 HGGLVNQGWHLFRSMTDI-HGVS--PQ--IVHYGCMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~-~~~~--p~--~~~~~~li~~~~~~g~~~eA~~~~~~m 635 (844)
..+++.+|..++.++... .... |+ ...|.+++..+...+++.+|...|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999887532 1122 22 346778888888999999988877654
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.63 E-value=1.4e+02 Score=34.80 Aligned_cols=254 Identities=13% Similarity=0.061 Sum_probs=117.4
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH--hhcCChhhHHHHHHHHHHhCC-------CchhhHHHHHHHH
Q 003148 314 NYVRLGLAREALAILDEMLLHGPRPDRVTMLSAVSAS--AQLGDLLCGRMCHGYVLRNGL-------EGWDSICNTMIDM 384 (844)
Q Consensus 314 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~i~~~~~~~g~-------~~~~~~~~~Li~~ 384 (844)
|....|+.++++.++...+..+...+...-...+-++ ...|..+.+...+...+...- .+......+|.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566788888888777665422122333333333333 334444445555544443321 1223333344333
Q ss_pred HHHcCC-HHHHHHHHhh-cCCCCcch--HH--HHHHHHHhcCCHHHHHHHHhhCCCC---CccccccccccccccCChHH
Q 003148 385 YMKCGK-QEMACRIFDH-MSNKTVVS--WN--SLIAGLIKNGDVESAREVFSEMPGR---DHISWNTMLGGLTQENMFEE 455 (844)
Q Consensus 385 y~~~g~-~~~A~~~f~~-m~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 455 (844)
.+-.|. -+++...+.. +...+..+ .. +|...|.-.|+-+....++..+.+. ++.-.-++.-|+...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 333332 1233333333 33333221 11 2233345566666666665543321 11122233334445677777
Q ss_pred HHHHHHHHHhCCcccChhhHH---hHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHh
Q 003148 456 AMELFRVMLSERIKVDRVTMV---GVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRR 532 (844)
Q Consensus 456 A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 532 (844)
+..+.+.+.... .| .+-|. .+.-+|+..|+.....+++..+.... ..++.-...+.-++.-.|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777665431 11 12222 23346777788777777777766532 22222221122222235555556666654
Q ss_pred cC-CCCHhHH--HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCh
Q 003148 533 ME-KRDVSAW--TAAIGAMAMEGNG-EQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 533 ~~-~~~~~~~--~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~ 573 (844)
+. ..|...- -++.-|..-.|.. .+|+.++..+.. .+|.
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~ 661 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVD 661 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCH
Confidence 44 2333222 2233333334443 567777777764 4454
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.25 E-value=26 Score=27.95 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 003148 151 SSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEM 230 (844)
Q Consensus 151 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 230 (844)
....++|..|-+.+...|- ...+--.-+..+...|++++|..+.+....||...|-+|-.+ +.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 4457788888887777663 333433445567889999999999999999999999888654 678877877777777
Q ss_pred HHcC
Q 003148 231 VEEG 234 (844)
Q Consensus 231 ~~~g 234 (844)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7665
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.50 E-value=26 Score=27.94 Aligned_cols=80 Identities=11% Similarity=0.045 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 003148 151 SSAFGEGVQVHGAIVKMGFDRDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEM 230 (844)
Q Consensus 151 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 230 (844)
....++|..|-+.+...|- ...+--.-+..+...|++++|..+.+....||...|-+|-.+ +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 4457788888887777663 333433445567889999999999999999999999988664 556667777666666
Q ss_pred HHcC
Q 003148 231 VEEG 234 (844)
Q Consensus 231 ~~~g 234 (844)
..+|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6554
No 262
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=69.84 E-value=35 Score=34.00 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 631 LIKSMPVEPN--DVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 631 ~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...+++|. ..++++-++.+.+++|+.-|..++++++++.|... ..++|+++.....+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 3555577774 34778888889999999999999999999998532 334577777766554
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.38 E-value=55 Score=39.83 Aligned_cols=60 Identities=8% Similarity=-0.065 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 003148 644 WGSLLAACQKHQNVDIAAYAAERITELDPEKSG-----VHVLLSNIYASAGKWTNVARVRLQMKE 703 (844)
Q Consensus 644 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 703 (844)
|..++..+.++|.++.+.+..+.+++..+.+.. .|..+-..+...|++++|...+-.+.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 344444555555556666555555553332211 233444445555666666555554444
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.21 E-value=43 Score=32.46 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=25.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 003148 549 AMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTD 601 (844)
Q Consensus 549 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 601 (844)
.+.|..++|++....-++ -.|.. ..-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555555555555554 33433 2333344455555555555555555544
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=67.71 E-value=21 Score=37.29 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCCcc
Q 003148 542 TAAIGAMAMEGNGEQAVELFNEMLRQGIKP-DSIVFVGVLTACSHGGLVNQGWHLFRSMTD----IHGVSPQIV 610 (844)
Q Consensus 542 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 610 (844)
..++..+...|++++|+..++.+.. ..| +...+..++.++...|+..+|++.|+...+ +.|+.|...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3456667777888888888887776 455 446777788888888888888888777644 346666644
No 266
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.49 E-value=1.2e+02 Score=33.96 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=18.6
Q ss_pred HHhcCChHHHHHHHHhCCCCCC
Q 003148 619 LGRAGLLGEALDLIKSMPVEPN 640 (844)
Q Consensus 619 ~~~~g~~~eA~~~~~~m~~~p~ 640 (844)
+.+.|++++|++.+++.++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3789999999999999977664
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=66.60 E-value=26 Score=28.09 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 554 GEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 554 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
.-+..+-++.+....+.|+.....+.|.||.+.+++.-|.++|+..+.+.| +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 335566666777777899999999999999999999999999998877544 33456776654
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.95 E-value=41 Score=28.61 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=48.3
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 003148 629 LDLIKSMPVEPNDVIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQGI 706 (844)
Q Consensus 629 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 706 (844)
+.-+-.+.+-|++.+..+-+.+|++-+|+..|.+++|-+...-.+...+|-.+.. ++.-.+.+.|+
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq------------ElkPtl~ELGI 141 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ------------ELRPTLNELGI 141 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH------------HHHHHHHHHTC
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH------------HHhhHHHHhCC
Confidence 3333345678999999999999999999999999999888755444455655432 45555566666
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.94 E-value=52 Score=33.64 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=45.9
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGN--GEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 573 (844)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 3567888999999999999999998664 3445555666655433 34577888888887765544
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.94 E-value=73 Score=38.71 Aligned_cols=142 Identities=8% Similarity=0.050 Sum_probs=84.7
Q ss_pred HHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCC----C----------------
Q 003148 478 VASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKR----D---------------- 537 (844)
Q Consensus 478 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~---------------- 537 (844)
++..+...+..+.++++.... +.++...-.+..+|..+|++++|.+.|++.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555555543322 233333344567788899999999999876411 0
Q ss_pred ------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--h--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 538 ------VSAWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS--I--VFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 538 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
..-|.-++..+.++|.++.++++-+..++....-+. . .|..+..++...|++++|...+-.+.. ..-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---TPL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---SSS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---HHH
Confidence 012455677777788888888777776653221111 1 356677777788888888777766654 122
Q ss_pred CcchHHHHHHHHHhcCChHH
Q 003148 608 QIVHYGCMVDLLGRAGLLGE 627 (844)
Q Consensus 608 ~~~~~~~li~~~~~~g~~~e 627 (844)
.......||..++..|.+++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 23445556666665554443
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.63 E-value=94 Score=28.49 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=20.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcC
Q 003148 272 ANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLG 319 (844)
Q Consensus 272 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 319 (844)
+|..+-...+..+.+.|..+....+.+.+.+++...-...+.++.+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 445555555555555554333333334344444333333333333333
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=61.75 E-value=1.2e+02 Score=31.69 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=53.3
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcC
Q 003148 179 LINFYGECGDIVDGRRVFDEMSERN---VVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVT--MVCVISACAKLQ 253 (844)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~ 253 (844)
.+...+..|+++-++.+++.-..++ ...++.|. ..++.|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLH-MAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHH-HHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 4555667788888888887644433 22233333 334455543 4444445555543321 112333444555
Q ss_pred CchHHHHHHHHHHHhCCCcchh--HHHHHHHHHHhcCCHHHHHHHHHh
Q 003148 254 NLELGDRVCAYIDELGMKANAL--MVNALVDMYMKCGAVDTAKQLFGE 299 (844)
Q Consensus 254 ~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~ 299 (844)
+.+. .+.+++.|..++.. ...+.+...++.|+.+....+++.
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 5543 33444445443321 111223344455666666555554
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.66 E-value=16 Score=35.36 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=37.3
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003148 618 LLGRAGLLGEALDLIKSM-PVEP-NDVIWGSLLAACQKHQNVDIAAYAAERITELDPEK 674 (844)
Q Consensus 618 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 674 (844)
.+.+.|.+++|++....- .-.| |...-..|+..++..|+.+.|..-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677777777766554 3344 44445556666777777777777777777777754
No 274
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=58.21 E-value=1.1e+02 Score=30.48 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCcchh--HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCceehHHHHHHHHHcCChHHHHHHHHHH
Q 003148 258 GDRVCAYIDELGMKANAL--MVNALVDMYMKCGAVDTAKQLFGECK----DRNLVLCNTIMSNYVRLGLAREALAILDEM 331 (844)
Q Consensus 258 a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 331 (844)
...+...+++.|..++.. ...+-+...++.|..+....+++.-. .+|..-++.|..+ ++.|+.+ +.+.+
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~L 292 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELL 292 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHH
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHH
Confidence 344555667777655432 12233455667788887777775421 1233334455443 4556543 44455
Q ss_pred HhcCCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCchh
Q 003148 332 LLHGPRPDRVTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEGWD 375 (844)
Q Consensus 332 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 375 (844)
++.|..+|..+ .|...+..|+.+ +.+.+++.|-.+|.
T Consensus 293 l~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 293 CKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 67788777665 233334445443 44556666665553
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.80 E-value=1.1e+02 Score=29.93 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=51.6
Q ss_pred hhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcc-cHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc---cHH
Q 003148 67 ISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLF-MYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKF---TFP 142 (844)
Q Consensus 67 ~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~ 142 (844)
..+.|...+..|+ .+-+..+++ ....++.. -++.| ..-+..|+.+-+ +.+.+.|..++.. -.+
T Consensus 31 g~t~L~~A~~~g~---~~~v~~Ll~-----~g~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t 97 (285)
T 3kea_A 31 GHSASYYAIADNN---VRLVCTLLN-----AGALKNLLENEFPL-HQAATLEDTKIV----KILLFSGLDDSQFDDKGNT 97 (285)
T ss_dssp SCCHHHHHHHTTC---HHHHHHHHH-----TTGGGSCCTTCCHH-HHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC
T ss_pred CCCHHHHHHHcCC---HHHHHHHHh-----CCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc
Confidence 3445555666676 666666665 32222221 12222 233445554433 3334445544432 223
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCChHHHHHHHhhcC
Q 003148 143 FVLNACTKSSAFGEGVQVHGAIVKMGFDRDVF---VENCLINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
.+..+ +..|+.+-. +.+++.|..++.. -+.+.+...+..|..+-+..+++.-.
T Consensus 98 ~L~~A-~~~g~~~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 98 ALYYA-VDSGNMQTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HHHHH-HHTTCHHHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHH-HHcCCHHHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 33333 344554433 3334445433321 11234444555666666666665543
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.79 E-value=67 Score=29.56 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=71.7
Q ss_pred HHHHHHHHhC-CCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 003148 626 GEALDLIKSM-PVEPNDV---IWGSLLAACQKHQNVDIAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
+++...|... ..+.|.. +|-.++..| ..++...+..+|+.+.. +.-.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555 3444543 565555544 24456788888888876 556667789999999999999999999998
Q ss_pred HHHhCCCccCCcccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCccCC
Q 003148 700 QMKEQGIRKLPGSSSIEVNGKVHEFTSGDESHPEMNNISSMLREMNCRLRDAGYVPD 756 (844)
Q Consensus 700 ~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~ 756 (844)
.-.+++-+ | .+.+.....+...+|.+.+.+.|
T Consensus 140 ~GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 87776532 2 23455566677778888777433
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.34 E-value=74 Score=29.78 Aligned_cols=24 Identities=17% Similarity=-0.143 Sum_probs=13.0
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCC
Q 003148 114 SCIGLGVEAISLYVELAGFGILPD 137 (844)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~ 137 (844)
++.|+.+....+++.+...|..++
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 445666655555555555554444
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.11 E-value=53 Score=34.75 Aligned_cols=58 Identities=5% Similarity=-0.096 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003148 611 HYGCMVDLLGRAGLLGEALDLIKSM-----PVEPNDVIWGSLLAACQKHQNVDIAAYAAERIT 668 (844)
Q Consensus 611 ~~~~li~~~~~~g~~~eA~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 668 (844)
.+..+.+.|.+.|++++|.+.+.++ +...-...|-..+..+...+|...+....+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344445555555555555555444 111112234444444444555555555544443
No 279
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.55 E-value=2.3e+02 Score=29.87 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=34.1
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcC----CC-C----HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRME----KR-D----VSAWTAAIGAMAMEGNGEQAVELFNEML 565 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~----~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 565 (844)
...|.+.|...|++.+|.+++..+. .. + +..+..-+..|...+++.+|..++.++.
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456666777777777777776654 11 1 2345555666667777777777766653
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=51.78 E-value=66 Score=27.38 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 003148 556 QAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVD 617 (844)
Q Consensus 556 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 617 (844)
+..+-++.+....+.|+.......|.+|.+.+++.-|.++|+..+.+.| +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555566666777899999999999999999999999999999887544 44556776654
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.77 E-value=1.7e+02 Score=27.97 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=20.0
Q ss_pred CChhhHHHHHHHHHHhCCCchhh--HHHHHHHHHHHcCCHHHHHHHHh
Q 003148 354 GDLLCGRMCHGYVLRNGLEGWDS--ICNTMIDMYMKCGKQEMACRIFD 399 (844)
Q Consensus 354 ~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~ 399 (844)
++......+...+.+.|..++.. ...+.+...++.|..+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333344555555555443321 11122333444555555555554
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.09 E-value=98 Score=27.89 Aligned_cols=155 Identities=11% Similarity=-0.057 Sum_probs=67.9
Q ss_pred HHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCccc---HHHHHHHH
Q 003148 72 CTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILPDKFT---FPFVLNAC 148 (844)
Q Consensus 72 ~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~ 148 (844)
...+..|+ .+....+++.-.. .....|..-++.|..+. +.|+. ++++.+.+.|..++... .+.+.. .
T Consensus 10 ~~A~~~g~---~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~-A 79 (201)
T 3hra_A 10 LEAANQRD---TKKVKEILQDTTY-QVDEVDTEGNTPLNIAV-HNNDI----EIAKALIDRGADINLQNSISDSPYLY-A 79 (201)
T ss_dssp HHHHHTTC---HHHHHHHHTCTTC-CTTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHH-H
T ss_pred HHHHHhcc---HHHHHHHHHcCCC-CCCCCCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHH-H
Confidence 34455666 7777777762100 01122333344444443 34443 34445555665554332 233333 3
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhc-CC---CCcccHHHHHHHHHhCCCchH
Q 003148 149 TKSSAFGEGVQVHGAIVKMGFDRDVF--VENCLINFYGECGDIVDGRRVFDEM-SE---RNVVSWTSLICACARRDLPKE 222 (844)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m-~~---~~~~~~~~li~~~~~~g~~~~ 222 (844)
+..|+.+..+.+++ ..+..++.. ...+.+...++.|..+-+..+++.- .. +|..-++.+..+.........
T Consensus 80 ~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 80 GAQGRTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp HHTTCHHHHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred HHcCCHHHHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 34455544433332 222222111 1112233445566766666666554 21 333344444444333222333
Q ss_pred HHHHHHHHHHcCCCCCc
Q 003148 223 AVYLFFEMVEEGIKPNS 239 (844)
Q Consensus 223 A~~l~~~m~~~g~~pd~ 239 (844)
-.++++.+.+.|..|+.
T Consensus 157 ~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 157 YQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 35556666666655543
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.64 E-value=49 Score=34.99 Aligned_cols=95 Identities=9% Similarity=-0.021 Sum_probs=65.8
Q ss_pred HHhHHhhhHHhcCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhH--HH
Q 003148 509 LATALVDMFARCGDPQRAMQVFRRMEK------RDVSAWTAAIGAMAMEGNGEQAVELFNEMLR---QGIKPDSIV--FV 577 (844)
Q Consensus 509 ~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t--~~ 577 (844)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445678888999999999999888762 2345677788888889999999988888754 333333321 11
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc
Q 003148 578 GVLTACSHGGLVNQGWHLFRSMTDIH 603 (844)
Q Consensus 578 ~ll~a~~~~g~~~~a~~~~~~m~~~~ 603 (844)
.-...+...+++.+|...|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11223456788999988888776644
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=49.22 E-value=2.4e+02 Score=29.12 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhcCC-HHHHHHHHhhCCC---CCcccc-----
Q 003148 378 CNTMIDMYMKCGKQEMACRIFDHMSN--------KTVVSWNSLIAGLIKNGD-VESAREVFSEMPG---RDHISW----- 440 (844)
Q Consensus 378 ~~~Li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~~~~~~----- 440 (844)
...|...|.+.|+.++...++..... +....-..+++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999998888765 122344556666655432 2222222222211 112233
Q ss_pred -ccccccccccCChHHHHHHHHHHHhCCcccChhhHHhHHHHccccCchHHHHHHHHHHHHhCCCCchhHHhHHhhhHHh
Q 003148 441 -NTMLGGLTQENMFEEAMELFRVMLSERIKVDRVTMVGVASACGYLGALDLAKWIYAYIEKNGIHCDMQLATALVDMFAR 519 (844)
Q Consensus 441 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 519 (844)
.-++..|...|++.+|++++.++.+.=-+.|..++ -..++-.-+.+|..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~------------------------------llev~lle~~~~~~ 151 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNL------------------------------LVEVQLLESKTYHA 151 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh------------------------------HHHHHHHHHHHHHH
Confidence 14566777788888888877777653111121111 01222333444444
Q ss_pred cCCHHHHHHHHHhcC------CCCHhHHH----HHHHHHH-hcCChHHHHHHHHHHHHC---CCCCC---hhHHHHHHHH
Q 003148 520 CGDPQRAMQVFRRME------KRDVSAWT----AAIGAMA-MEGNGEQAVELFNEMLRQ---GIKPD---SIVFVGVLTA 582 (844)
Q Consensus 520 ~g~~~~A~~~~~~~~------~~~~~~~~----~li~~~~-~~g~~~~A~~l~~~m~~~---g~~p~---~~t~~~ll~a 582 (844)
.|++..+...+.... .+++..-. .-...+. ..+++..|...|-+..+. -..|. ...|.. +.+
T Consensus 152 ~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~a 230 (394)
T 3txn_A 152 LSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCK 230 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHH
T ss_pred hccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHH
Confidence 445444444443321 01111100 0111233 456666666655554321 00121 112322 222
Q ss_pred HhccCcHHHHHHHHH-HhHhhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHhC--CCCCChHH---HHHHHHHHHhcCC
Q 003148 583 CSHGGLVNQGWHLFR-SMTDIHGVSPQIVHYGCMVDLLGRAGLLGEALDLIKSM--PVEPNDVI---WGSLLAACQKHQN 656 (844)
Q Consensus 583 ~~~~g~~~~a~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~---~~~ll~~~~~~g~ 656 (844)
..... ..+-..++. .....+ ..|+...+..++.+| +.+++.+..++++.. .+..|... |..|....+
T Consensus 231 Ll~~~-r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir---- 303 (394)
T 3txn_A 231 IMLGQ-SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML---- 303 (394)
T ss_dssp HHTTC-GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH----
T ss_pred HHcCC-HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH----
Confidence 22222 122222221 111112 345555555666654 467887777777766 34445542 222211111
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 657 VDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 657 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+..+.++ ..|-.......++....- ..++++...-+|...|
T Consensus 304 ----~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 304 ----EQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp ----HHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 1222222 356555566677665532 6778888888888776
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.46 E-value=1.1e+02 Score=27.49 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHhc-CC---CCceehHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh
Q 003148 283 MYMKCGAVDTAKQLFGEC-KD---RNLVLCNTIMSNYVRLGLAREALAILDEMLLHGPRPDR 340 (844)
Q Consensus 283 ~y~~~g~~~~A~~~f~~m-~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 340 (844)
..++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..++.
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 344556666655555543 11 23333444443332222223334455555555655543
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.43 E-value=1.6e+02 Score=27.40 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCCCChhHHHHhhC
Q 003148 69 KVVCTCAQMGTFESLTYAQKAFD 91 (844)
Q Consensus 69 ~ll~~y~~~g~~~~~~~A~~~f~ 91 (844)
+.|...++.|+ .+....+++
T Consensus 11 t~L~~A~~~g~---~~~v~~Ll~ 30 (241)
T 1k1a_A 11 TPLHIAVVQGN---LPAVHRLVN 30 (241)
T ss_dssp CHHHHHHHTTC---HHHHHHHHH
T ss_pred cHHHHHHHcCC---HHHHHHHHH
Confidence 34444455555 555544444
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.37 E-value=51 Score=31.61 Aligned_cols=51 Identities=8% Similarity=-0.226 Sum_probs=25.8
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHh--cCCChHHHHHHHHHH
Q 003148 114 SCIGLGVEAISLYVELAGFGILPDKF-------TFPFVLNACT--KSSAFGEGVQVHGAI 164 (844)
Q Consensus 114 ~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 164 (844)
++.|+.+....+++.+...|..++.. -.+.|..++. +.|+.+..+.+++.-
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 44566666666666555555444422 2233333332 456666555555543
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.34 E-value=57 Score=31.20 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=25.6
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcch-------HHHHHHHHH--hcCCchHHHHHHHHH
Q 003148 215 ARRDLPKEAVYLFFEMVEEGIKPNSVT-------MVCVISACA--KLQNLELGDRVCAYI 265 (844)
Q Consensus 215 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~ 265 (844)
++.|+.+....+++.+.+.|..++... .+.+..|+. +.|+.+.++.+++.-
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 455666666666665555555544222 233333332 446666555555543
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.41 E-value=1.4e+02 Score=25.96 Aligned_cols=75 Identities=5% Similarity=-0.075 Sum_probs=49.8
Q ss_pred HHHHHHHHhC-CCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 003148 626 GEALDLIKSM-PVEPNDV---IWGSLLAACQKHQNVDIAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
+.+...|... ..+.|.. +|-.++..| +.+..+++.+.. +.-..+..|...+..+...|++.+|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456666555 3444544 444333322 237778877775 455566788889999999999999999998
Q ss_pred HHHhCCC
Q 003148 700 QMKEQGI 706 (844)
Q Consensus 700 ~m~~~~~ 706 (844)
.-.+++-
T Consensus 126 ~Gi~~~A 132 (152)
T 4a1g_A 126 RGIQNQA 132 (152)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8777643
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.85 E-value=3.3e+02 Score=28.21 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=74.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCC
Q 003148 145 LNACTKSSAFGEGVQVHGAIVKMGFDRDVF--VENCLINFYGECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDL 219 (844)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 219 (844)
|...+..|+++..+. +++.|..++.. ...+.+...+..|..+-++.+++.-.. +|..-++.|..+ ++.|+
T Consensus 18 L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA-ARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH-HHHTC
T ss_pred HHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH-HHCCC
Confidence 444455677665444 44556655432 123345566778888888888876443 333334444433 44555
Q ss_pred chHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcCCchHHHHHHHHHHHhCCCcchh--HHHHHHHHHHhcCCHHHHHH
Q 003148 220 PKEAVYLFFEMVEEGIKPNSVTM--VCVISACAKLQNLELGDRVCAYIDELGMKANAL--MVNALVDMYMKCGAVDTAKQ 295 (844)
Q Consensus 220 ~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~ 295 (844)
. ++++.+.+.|..|+.... .+.+...+..|+.+..+.++ +.+...+.. ...+.+...++.|+.+-+..
T Consensus 93 ~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 93 T----NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164 (437)
T ss_dssp H----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred H----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 4 455555666766653321 23344455566666554444 444332211 11123344456667666666
Q ss_pred HHHhcC
Q 003148 296 LFGECK 301 (844)
Q Consensus 296 ~f~~m~ 301 (844)
+++.-.
T Consensus 165 Ll~~g~ 170 (437)
T 1n11_A 165 LLERDA 170 (437)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 665433
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.42 E-value=2.1e+02 Score=25.78 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 003148 171 RDVFVENCLINFYGECGDIVDGRRVFDEMSERNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACA 250 (844)
Q Consensus 171 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 250 (844)
+|..+....+....+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444444444444433333444444444443333344444444443 23333333332 244445555555555
Q ss_pred hcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHHcCChHHHHHHHHH
Q 003148 251 KLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVRLGLAREALAILDE 330 (844)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 330 (844)
..++.+....+...+ -.++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.|. .++...+..
T Consensus 102 ~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 102 QIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp HHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 555543333222222 134555555555555555554333333333344444444444444444443 334444444
Q ss_pred HH
Q 003148 331 ML 332 (844)
Q Consensus 331 m~ 332 (844)
+.
T Consensus 177 ~l 178 (201)
T 3ltj_A 177 LA 178 (201)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.99 E-value=1.4e+02 Score=27.68 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=12.1
Q ss_pred HHHHHHhcCChHHHHHHHhhcC
Q 003148 179 LINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 179 Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
.+...++.|+.+-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3445555666666665555443
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.97 E-value=1.3e+02 Score=25.36 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=44.3
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGN--GEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 573 (844)
.+.+++-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567888999999999999999997553 2344555556655542 35677788888777654433
No 294
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.49 E-value=2.4e+02 Score=25.93 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 540 AWTAAIGAMAMEGNGEQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
.|-..+..+ ..+...++.++|..|...|+--.. .-|......+...|++++|.++|+.-++ .+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 455444443 233455777778877777766665 3455556666677777777777777666 44444
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.29 E-value=4.5e+02 Score=29.08 Aligned_cols=351 Identities=10% Similarity=-0.045 Sum_probs=184.7
Q ss_pred hhHHHHHHhhcCCCCcch----hhHHHHHHHhcCCCCChhHHHHhhCccccCCCCCCCcccHHHHHHHHHcCCCchHHHH
Q 003148 49 KQPHCHILKQGLGHKPSY----ISKVVCTCAQMGTFESLTYAQKAFDYYIKDNETSATLFMYNSLIRGYSCIGLGVEAIS 124 (844)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~----~~~ll~~y~~~g~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 124 (844)
.++-..+.+. |+... -+.-+...++.++ .......|. . ++.+...--....+....|+..+|..
T Consensus 56 ~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~~~~~---w~~~l~~~~-----~-~p~~~~~~c~~~~A~~~~G~~~~a~~ 123 (618)
T 1qsa_A 56 VTVTNFVRAN---PTLPPARTLQSRFVNELARRED---WRGLLAFSP-----E-KPGTTEAQCNYYYAKWNTGQSEEAWQ 123 (618)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTTC---HHHHHHHCC-----S-CCSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHC---CCChhHHHHHHHHHHHHHhCCC---HHHHHHhcc-----C-CCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 3555555443 33333 3444666777777 888888666 5 44444444456677888899889999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCChHHH--HHHHHHHHHhC-----------CCCCh-hHHHHHHHHHHhcCChH
Q 003148 125 LYVELAGFGILPDKFTFPFVLNACTKSSAFGEG--VQVHGAIVKMG-----------FDRDV-FVENCLINFYGECGDIV 190 (844)
Q Consensus 125 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~Li~~y~~~g~~~ 190 (844)
..+.+...|. ........++..+.+.|.+... .+=...+...| ++++. .....++..+.+ ..
T Consensus 124 ~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~ 199 (618)
T 1qsa_A 124 GAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PN 199 (618)
T ss_dssp HHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GG
T ss_pred HHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hH
Confidence 9999888773 3455677788888766655432 22222222222 11111 111222222221 11
Q ss_pred HHHHHHhhcCCCCccc---HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHH----hcCCchHHHHHHH
Q 003148 191 DGRRVFDEMSERNVVS---WTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMVCVISACA----KLQNLELGDRVCA 263 (844)
Q Consensus 191 ~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~ 263 (844)
.+....... .++... ...-+.-+.+. +.+.|..+|....... ..+......+-...+ ..+....+...+.
T Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 276 (618)
T 1qsa_A 200 TVLTFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (618)
T ss_dssp GHHHHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred hHHHHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 222222211 111111 11123333443 7789999998887643 233333333333333 2332555666666
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc--eeh-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCh
Q 003148 264 YIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNL--VLC-NTIMSNYVRLGLAREALAILDEMLLHGPRPDR 340 (844)
Q Consensus 264 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~--~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 340 (844)
.........+. ..-.+....+.|+.+.|.+.|+.|..... .-| --+..++.+.|+.++|..+|..+...
T Consensus 277 ~~~~~~~~~~~--~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------ 348 (618)
T 1qsa_A 277 DAIMRSQSTSL--IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------ 348 (618)
T ss_dssp HHHHTCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------
T ss_pred hccccCCChHH--HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------
Confidence 65444322222 33344445577999999999999987422 222 22345677889999999999998642
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHcCCHHHHHHHHhhcCC-CCcchHHHHH
Q 003148 341 VTMLSAVSASAQLGDLLCGRMCHGYVLRNGLEG------WDSICNTMIDMYMKCGKQEMACRIFDHMSN-KTVVSWNSLI 413 (844)
Q Consensus 341 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li 413 (844)
.+|-.++.+ .+.|...... . ....+ ...-.-.-+..+...|....|...+..+.. .+......+.
T Consensus 349 ~~fYg~lAa-~~Lg~~~~~~-~------~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la 420 (618)
T 1qsa_A 349 RGFYPMVAA-QRIGEEYELK-I------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLA 420 (618)
T ss_dssp CSHHHHHHH-HHTTCCCCCC-C------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CChHHHHHH-HHcCCCCCCC-C------CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHH
Confidence 245444433 2222110000 0 00000 000111234556778999988887777653 3333334444
Q ss_pred HHHHhcCCHHHHHHHHhhCCC
Q 003148 414 AGLIKNGDVESAREVFSEMPG 434 (844)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~ 434 (844)
......|..+.+.........
T Consensus 421 ~~a~~~~~~~~~v~~~~~~~~ 441 (618)
T 1qsa_A 421 RYAFNNQWWDLSVQATIAGKL 441 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHHHHHh
Confidence 555667777776665554443
No 296
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=37.79 E-value=10 Score=24.15 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=12.7
Q ss_pred cCCccccc-cCccccCCCC
Q 003148 826 DNNRFHFF-RQGSCSCSDF 843 (844)
Q Consensus 826 d~~~~h~~-~~g~csc~~~ 843 (844)
.|-.=|.. ++|.||||-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34445555 6899999976
No 297
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.56 E-value=1.3e+02 Score=27.95 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=9.3
Q ss_pred HHHHhcCChHHHHHHHhh
Q 003148 181 NFYGECGDIVDGRRVFDE 198 (844)
Q Consensus 181 ~~y~~~g~~~~A~~~f~~ 198 (844)
...+..|+.+-+..+++.
T Consensus 82 ~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334455555555555554
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.80 E-value=1.7e+02 Score=25.86 Aligned_cols=76 Identities=9% Similarity=0.140 Sum_probs=50.9
Q ss_pred hHHHHHHHHhC-CCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 003148 625 LGEALDLIKSM-PVEPNDV---IWGSLLAACQKHQNVDIAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVR 698 (844)
Q Consensus 625 ~~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 698 (844)
++.+...|..- ..+.|.- +|-.++..| ++ +..+|+.+.. +.-..+..|...+..+...|++.+|.+++
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455555444 3444544 555444443 33 6667777765 55566778889999999999999999999
Q ss_pred HHHHhCCC
Q 003148 699 LQMKEQGI 706 (844)
Q Consensus 699 ~~m~~~~~ 706 (844)
+.-.+++-
T Consensus 120 ~~Gi~~~A 127 (164)
T 2wvi_A 120 QEGIQQKA 127 (164)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 88877653
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.76 E-value=1.2e+02 Score=28.05 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=8.9
Q ss_pred HHHHhcCChHHHHHHHhh
Q 003148 181 NFYGECGDIVDGRRVFDE 198 (844)
Q Consensus 181 ~~y~~~g~~~~A~~~f~~ 198 (844)
...+..|..+-+..+++.
T Consensus 114 ~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 114 HLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCHHHHHHHHHhc
Confidence 334445555555555543
No 300
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.75 E-value=87 Score=31.19 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHhCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 003148 631 LIKSMPVEPND--VIWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQG 705 (844)
Q Consensus 631 ~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 705 (844)
+|....++|.. .++++-++.+.+++|+.-|..++++++++.|... ..++|+++.....+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 35555777743 4777888889999999999999999999987521 2345777776665543
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.73 E-value=2e+02 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 003148 543 AAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL 588 (844)
Q Consensus 543 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 588 (844)
-+|+++.+ ..+.+.|+-.+-+|++.| .|..+.-..++.+....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 35555544 579999999999999999 7777777777777766664
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.17 E-value=1e+02 Score=25.98 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCC--chHHHHHHHHHHHcCCC
Q 003148 176 ENCLINFYGECGDIVDGRRVFDEMSERN---VVSWTSLICACARRDL--PKEAVYLFFEMVEEGIK 236 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 236 (844)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888899999999999887652 2334455555555432 34567777777766643
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.49 E-value=2e+02 Score=27.93 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=33.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003148 614 CMVDLLGRAGLLGEALDLIKSMPVEPND-VIWGSLLAACQKHQNVDIAAYAAERITELDPE 673 (844)
Q Consensus 614 ~li~~~~~~g~~~eA~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 673 (844)
+.+..-+..|+.+-+..+++.-+...+. .-+..| ......|+.+....+++.-...+..
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~ 190 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCI-HITIKNGHVDMMILLLDYMTSTNTN 190 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHH-HHHHHTTCHHHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHH-HHHHHcChHHHHHHHHHcCCCCCcc
Confidence 3444556677776666666554322233 333443 3445678888887777776655443
No 304
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.04 E-value=3.2e+02 Score=24.95 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=11.3
Q ss_pred HHHHHHhcCCCCChhHHHHhhC
Q 003148 70 VVCTCAQMGTFESLTYAQKAFD 91 (844)
Q Consensus 70 ll~~y~~~g~~~~~~~A~~~f~ 91 (844)
.|...++.|+ .+....+++
T Consensus 6 ~L~~A~~~g~---~~~v~~Ll~ 24 (232)
T 2rfa_A 6 PLLLAAKEND---VQALSKLLK 24 (232)
T ss_dssp HHHHHHHTTC---HHHHHHHHT
T ss_pred HHHHHHHcCC---HHHHHHHHH
Confidence 4445556666 666666665
No 305
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=29.94 E-value=3.2e+02 Score=29.47 Aligned_cols=66 Identities=8% Similarity=0.004 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHH----HHHHHH-hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 003148 639 PNDVIWGSLLAACQKHQNVDIAAY----AAERIT-ELDPEKSGVHVLLSNIYASAGKWTNVARVRLQMKEQ 704 (844)
Q Consensus 639 p~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 704 (844)
+|...-..|-.-+..+|..++-++ ..+.-+ +..|++.....+|-.-|.+.|++-+|.++...+...
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 455555556666667776554432 122222 244666666777777889999999999999988876
No 306
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.58 E-value=1.9e+02 Score=27.58 Aligned_cols=97 Identities=10% Similarity=-0.068 Sum_probs=43.9
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC-------CcccHHHHHHHHh--cCCChHHHHHHHHHHHHhC----
Q 003148 102 TLFMYNSLIRGYSCIGLGVEAISLYVELAGFGILP-------DKFTFPFVLNACT--KSSAFGEGVQVHGAIVKMG---- 168 (844)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 168 (844)
|..-++.|..+ ++.|+.+....+++.....+... |..-.+.|..++. +.|+.+-++.+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 33344444443 44566666666666555444322 2233444444443 2456655555555432211
Q ss_pred -----CC-CChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 003148 169 -----FD-RDVFVENCLINFYGECGDIVDGRRVFDEMS 200 (844)
Q Consensus 169 -----~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 200 (844)
.. .|..-.+ .+...+..|..+-++.+++.-.
T Consensus 89 ~i~~~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 89 FVNASYTDSYYKGQT-ALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHTCCCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HhhcccccccCCCCC-HHHHHHHcCCHHHHHHHHHCCC
Confidence 00 1111222 2333445666666666666533
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.44 E-value=1.3e+02 Score=26.19 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=43.8
Q ss_pred HhHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh
Q 003148 510 ATALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGN--GEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 510 ~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 573 (844)
.+.+++-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567888999999999999999997653 3344555556655432 34567777777776654433
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.27 E-value=4.3e+02 Score=26.12 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=43.7
Q ss_pred hHHhhhHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh
Q 003148 511 TALVDMFARCGDPQRAMQVFRRMEKRD---VSAWTAAIGAMAMEGN--GEQAVELFNEMLRQGIKPDS 573 (844)
Q Consensus 511 ~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 573 (844)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 457788888999999999999998663 2344555555555433 34566788888877655443
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.06 E-value=3.4e+02 Score=24.88 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=7.2
Q ss_pred HHHHHHHcCCCCCc
Q 003148 226 LFFEMVEEGIKPNS 239 (844)
Q Consensus 226 l~~~m~~~g~~pd~ 239 (844)
+++.+.+.|..++.
T Consensus 26 ~v~~Ll~~g~~~~~ 39 (237)
T 3b7b_A 26 ICHMLVQAGANIDT 39 (237)
T ss_dssp HHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCCcCc
Confidence 44455555655443
No 310
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.35 E-value=12 Score=20.58 Aligned_cols=13 Identities=38% Similarity=1.160 Sum_probs=9.5
Q ss_pred cccCccc--cCCCCC
Q 003148 832 FFRQGSC--SCSDFW 844 (844)
Q Consensus 832 ~~~~g~c--sc~~~w 844 (844)
+|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 6788888 577666
No 311
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.10 E-value=3.5e+02 Score=27.07 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=7.7
Q ss_pred HHHcCCHHHHHHHHhh
Q 003148 385 YMKCGKQEMACRIFDH 400 (844)
Q Consensus 385 y~~~g~~~~A~~~f~~ 400 (844)
-+..|+.+.+..+++.
T Consensus 27 Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 27 AARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3444555555555443
No 312
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.77 E-value=4e+02 Score=25.34 Aligned_cols=246 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccccccccccccCC----hHHHHHHHHHHHhCCcccC
Q 003148 396 RIFDHMSNKTVVSWNSLIAGLIKNGDVESAREVFSEMPGRDHISWNTMLGGLTQENM----FEEAMELFRVMLSERIKVD 471 (844)
Q Consensus 396 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~ 471 (844)
.++..+..++...-...+..+.+.+..+....+.+.+..++...-...+.++.+.|. ....+.++..+... .++
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~ 104 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKS 104 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCC
Q ss_pred hhhHHhHHHHccccC--chHHHHHHHHHHHHhCCCCchhHHhHHhhhHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 003148 472 RVTMVGVASACGYLG--ALDLAKWIYAYIEKNGIHCDMQLATALVDMFARCGDPQRAMQVFRRMEKRDVSAWTAAIGAMA 549 (844)
Q Consensus 472 ~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 549 (844)
...-...+.++...+ .......+...+.+.--.++..+-...+...++.|+.+....+...+..++...-...+.++.
T Consensus 105 ~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q ss_pred hcC-ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003148 550 MEG-NGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQIVHYGCMVDLLGRAGLLGEA 628 (844)
Q Consensus 550 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 628 (844)
..| ....+...+.++.+ .+|...-...+.++.+.|...-...+...+.. |+ .-...+.++++.|.-+-.
T Consensus 185 ~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d-----~~--vr~~a~~aL~~i~~~~~~ 254 (280)
T 1oyz_A 185 INKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-----NT--VYDDIIEAAGELGDKTLL 254 (280)
T ss_dssp HHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS-----SS--CCHHHHHHHHHHCCGGGH
T ss_pred hhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC-----cc--HHHHHHHHHHhcCchhhh
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHh
Q 003148 629 LDLIKSMPVEPNDVIWGSLLAACQK 653 (844)
Q Consensus 629 ~~~~~~m~~~p~~~~~~~ll~~~~~ 653 (844)
-.+.+-+.-.++.......+.+..+
T Consensus 255 ~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 255 PVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhhc
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.38 E-value=2.5e+02 Score=25.59 Aligned_cols=58 Identities=24% Similarity=0.166 Sum_probs=33.1
Q ss_pred hHHHHHHHHhCCCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 003148 625 LGEALDLIKSMPVEPNDV-------IWGSLLAACQKHQNVDIAAYAAERITELDPEKSGVHVLLS 682 (844)
Q Consensus 625 ~~eA~~~~~~m~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 682 (844)
++.|+.+++.+.-.-|.. +--..+..|.+.|.+++|.+++++.+.-.|.+...-.-|.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 456677777663222211 1223345789999999999999999887766654444343
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.68 E-value=95 Score=27.14 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCC--chHHHHHHHHHHHcCCC
Q 003148 176 ENCLINFYGECGDIVDGRRVFDEMSERN---VVSWTSLICACARRDL--PKEAVYLFFEMVEEGIK 236 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 236 (844)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888889999999998887652 2334455555555322 34566777777766543
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.46 E-value=1.1e+02 Score=32.85 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCC--cchHH-HHHHHHHhcCChHHHHHHHHhC
Q 003148 574 IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSPQ--IVHYG-CMVDLLGRAGLLGEALDLIKSM 635 (844)
Q Consensus 574 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~-~li~~~~~~g~~~eA~~~~~~m 635 (844)
..++.++..|.+.+.+++|..+..+..--....++ ...|. .++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566666666777777777766655310000011 01111 2344555566666766666554
No 316
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=26.09 E-value=2e+02 Score=27.82 Aligned_cols=20 Identities=5% Similarity=-0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 003148 176 ENCLINFYGECGDIVDGRRV 195 (844)
Q Consensus 176 ~~~Li~~y~~~g~~~~A~~~ 195 (844)
..+.+...+..|+.++..++
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGS 34 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHHhhcCCCCCcccC
Confidence 34445555555665555553
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.85 E-value=3.8e+02 Score=24.42 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=6.6
Q ss_pred HHcCCHHHHHHHHh
Q 003148 386 MKCGKQEMACRIFD 399 (844)
Q Consensus 386 ~~~g~~~~A~~~f~ 399 (844)
++.|+.+-+..+++
T Consensus 205 ~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 44455554444444
No 318
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.46 E-value=3.6e+02 Score=24.02 Aligned_cols=17 Identities=6% Similarity=-0.339 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHcCC
Q 003148 374 WDSICNTMIDMYMKCGK 390 (844)
Q Consensus 374 ~~~~~~~Li~~y~~~g~ 390 (844)
+..+....+.+..+.|.
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33344444444444444
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.00 E-value=2.2e+02 Score=26.02 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 003148 544 AIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL 588 (844)
Q Consensus 544 li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 588 (844)
+|+++.+ ..+.+.|+-.+-+|++.|-.|..+.-..++.+....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 5566544 57999999999999999988887777666666665554
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.57 E-value=5.3e+02 Score=25.64 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHhh
Q 003148 415 GLIKNGDVESAREVFSE 431 (844)
Q Consensus 415 ~~~~~g~~~~A~~~~~~ 431 (844)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455666655555554
No 321
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.50 E-value=78 Score=17.34 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHHH
Q 003148 733 EMNNISSMLREMNCRLRD 750 (844)
Q Consensus 733 ~~~~i~~~l~~l~~~~~~ 750 (844)
++.++|..++.+.+.+++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356777777777666654
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.39 E-value=2.7e+02 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=13.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHH
Q 003148 211 ICACARRDLPKEAVYLFFEMVE 232 (844)
Q Consensus 211 i~~~~~~g~~~~A~~l~~~m~~ 232 (844)
++.+....++++|++++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666666666665543
No 323
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.19 E-value=2.6e+02 Score=27.05 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=0.0
Q ss_pred chhhHHHHHHHhcCC
Q 003148 65 SYISKVVCTCAQMGT 79 (844)
Q Consensus 65 ~~~~~ll~~y~~~g~ 79 (844)
....+.++..+..|+
T Consensus 13 ~~~~~~lH~Aa~~g~ 27 (285)
T 3d9h_A 13 GLVPRGSHMASMDGK 27 (285)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHhhcCC
Confidence 344556666666666
No 324
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.98 E-value=3e+02 Score=29.60 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhCCCCCCh------HHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 003148 609 IVHYGCMVDLLGRAGLLGEALDLIKSMPVEPND------VIWGSL-LAACQKHQNVDIAAYAAERITELDPEKS 675 (844)
Q Consensus 609 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~------~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 675 (844)
...+++++..|...+.++.|..++.+..++... ..|.-. ......++++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 456777777788888888888888877433221 122222 2234556777777777777777666553
No 325
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.02 E-value=3.1e+02 Score=25.25 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=36.1
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 003148 541 WTAAIGAMAM---EGNGEQAVELFNEMLRQGIKPDSIVFVGVLTACSHGGL 588 (844)
Q Consensus 541 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 588 (844)
.--+|+++.+ ..+.+.|+-.+-+|++.|-.|..+.-..++.+.-.-|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3345666544 57999999999999999988888777777766666554
No 326
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.95 E-value=4.3e+02 Score=23.69 Aligned_cols=91 Identities=9% Similarity=0.029 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCceehHHHHHHHHH
Q 003148 238 NSVTMVCVISACAKLQNLELGDRVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGECKDRNLVLCNTIMSNYVR 317 (844)
Q Consensus 238 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 317 (844)
|...-...+.++...++.+....+...+ -.++..+....+.++.+.|..+....+.+.+.+++...-...+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444444445555544433222222211 134555555555555555554333333333334444444444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 003148 318 LGLAREALAILDEMLL 333 (844)
Q Consensus 318 ~g~~~~A~~l~~~m~~ 333 (844)
.+. .++...+.++..
T Consensus 170 ~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 170 IGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HCS-HHHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHHh
Confidence 443 334444444443
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.82 E-value=1e+02 Score=28.86 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=49.3
Q ss_pred HHHHHHHHhC-CCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 003148 626 GEALDLIKSM-PVEPNDV---IWGSLLAACQKHQNVDIAAYAAERITE--LDPEKSGVHVLLSNIYASAGKWTNVARVRL 699 (844)
Q Consensus 626 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 699 (844)
+++...|... ..+-|.. +|-.++.. .+....+|+.+.. +.-..+..|...+..+...|++.+|.++++
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555544 3444543 44444432 2356677777775 555666788899999999999999999998
Q ss_pred HHHhCC
Q 003148 700 QMKEQG 705 (844)
Q Consensus 700 ~m~~~~ 705 (844)
.-.+++
T Consensus 175 ~Gi~~~ 180 (223)
T 4aez_C 175 KGKRMK 180 (223)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 877654
No 328
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=21.77 E-value=54 Score=25.45 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHHHHHHHcCccCCCCCcccccchHHHhhhhhhhhHHHHHHHH
Q 003148 732 PEMNNISSMLREMNCRLRDAGYVPDLTNVLLDVDEQEKKYLLSHHSEKLAMAFG 785 (844)
Q Consensus 732 ~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~ 785 (844)
++..+|...+++...+++..|+.||...+--. ..-+-+|.+-..||
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~e--------ayef~~e~v~~e~g 58 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGRE--------AYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECHH--------HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH--------HHHHHHHHHhHhhc
Confidence 44667888888889999999999997654311 22234555555665
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.72 E-value=2.4e+02 Score=25.79 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHH
Q 003148 107 NSLIRGYSCIGLGVEAISLYVELAGFGILPDKFTFPFVLNACTKSSAFGEGVQVHGAIVKMGFDRDV--FVENCLINFYG 184 (844)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~ 184 (844)
+..+...++.|+.+....++..-...-..+|..-.+.+..++.... .++.+.+++.|..++. ....+.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred hcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCCchHHH
Q 003148 185 ECGDIVDGRRVFDEMSE---RNVVSWTSLICACARRDLPKEAVYLFFEMVEEGIKPNSVTMV--CVISACAKLQNLELGD 259 (844)
Q Consensus 185 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~ 259 (844)
..|+.+-+..+++.-.. +|..-++.+..+..... .++++.+.+.|..|+..... +.+...+..|+.+..+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR-----HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003148 260 RVCAYIDELGMKANALMVNALVDMYMKCGAVDTAKQLFGE 299 (844)
Q Consensus 260 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 299 (844)
.+++ ....+........+-+...++.|+.+-+.-+++.
T Consensus 157 ~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 157 ILLF--YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHh--cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
No 330
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.41 E-value=29 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCcEEEEe----ccccCCchhhhhHhhhcccceeEEeecCCccccccCcccc
Q 003148 792 TMPIRVVK----NLRLCCDCHSFAKLVSKVYDREIIVRDNNRFHFFRQGSCS 839 (844)
Q Consensus 792 ~~~~~~~~----nl~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~cs 839 (844)
...+||+. +.++|-+| .+...-..-.+.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45567763 56777776 333333444688999999999874
No 331
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.85 E-value=23 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.8
Q ss_pred ccccCCchhhhh
Q 003148 800 NLRLCCDCHSFA 811 (844)
Q Consensus 800 nl~~c~~~h~~~ 811 (844)
+-|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998543
No 332
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=20.81 E-value=32 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=18.1
Q ss_pred eeEEeecCCccccccCccccCC
Q 003148 820 REIIVRDNNRFHFFRQGSCSCS 841 (844)
Q Consensus 820 ~~~~~~d~~~~h~~~~g~csc~ 841 (844)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999986543
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.81 E-value=1.8e+02 Score=24.66 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=7.0
Q ss_pred HhcCCHHHHHHHHHh
Q 003148 285 MKCGAVDTAKQLFGE 299 (844)
Q Consensus 285 ~~~g~~~~A~~~f~~ 299 (844)
++.|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344455544444444
No 334
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.72 E-value=2e+02 Score=30.95 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 003148 655 QNVDIAAYAAERITELDPEKSGVHVLLSNIYASAGKWTNVA 695 (844)
Q Consensus 655 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 695 (844)
...+.|...|.++..+.|++...|..|+.++...|+.-+|.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 34455555555555555555555555555555555444433
No 335
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.06 E-value=4.3e+02 Score=22.92 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 003148 555 EQAVELFNEMLRQGIKPDS-IVFVGVLTACSHGGLVNQGWHLFRSMTDIHGVSP 607 (844)
Q Consensus 555 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 607 (844)
+++.++|..|...|+--.. .-|..-...+...|++++|.++|+.-++ .+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 3467777777777766655 3455556666677777777777777666 34444
Done!