Query 003149
Match_columns 844
No_of_seqs 451 out of 2097
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 15:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.8 4.5E-19 1.5E-23 171.4 7.5 127 695-834 54-181 (185)
2 3by4_A OTU1, ubiquitin thioest 99.7 2.2E-18 7.4E-23 171.7 4.8 128 699-842 19-147 (212)
3 3phx_A RNA-directed RNA polyme 99.6 1.7E-15 5.7E-20 147.2 5.0 125 700-837 31-162 (185)
4 3phu_A RNA-directed RNA polyme 99.5 3.1E-15 1.1E-19 148.1 6.2 127 700-839 31-164 (219)
5 1tff_A Ubiquitin thiolesterase 99.2 2.5E-11 8.5E-16 122.7 9.0 98 728-836 133-232 (234)
6 2zfy_A Ubiquitin thioesterase 98.9 1.2E-09 4E-14 110.7 6.8 95 729-834 137-234 (234)
7 3dkb_A Tumor necrosis factor, 98.9 1E-08 3.5E-13 105.2 11.5 130 704-835 116-283 (390)
8 4dhi_B Ubiquitin thioesterase 98.8 6.4E-09 2.2E-13 106.2 9.0 99 730-840 173-279 (284)
9 3zrh_A Ubiquitin thioesterase 98.7 1.1E-07 3.8E-12 99.3 11.8 123 705-837 194-351 (454)
10 4ddg_A Ubiquitin-conjugating e 98.6 4.3E-08 1.5E-12 107.7 6.4 97 727-834 300-399 (399)
11 2ayd_A WRKY transcription fact 95.8 0.04 1.4E-06 44.0 8.0 59 59-141 16-74 (76)
12 1wj2_A Probable WRKY transcrip 94.9 0.048 1.6E-06 43.7 6.0 59 59-141 19-77 (78)
13 2rpr_A Flywch-type zinc finger 88.3 0.89 3E-05 37.7 6.1 49 59-141 26-74 (87)
14 3hot_A Transposable element ma 63.3 1.4E+02 0.0049 30.8 16.5 47 155-201 9-55 (345)
15 3kks_A Integrase, IN; beta-str 56.7 28 0.00097 31.0 7.7 66 253-329 2-67 (152)
16 1je8_A Nitrate/nitrite respons 41.3 84 0.0029 24.9 7.3 45 134-179 3-47 (82)
17 3hph_A Integrase, IN; protein- 35.5 82 0.0028 30.2 7.6 66 254-330 61-126 (219)
18 1c0m_A Protein (integrase); HI 32.7 1.2E+02 0.004 29.6 8.3 69 254-328 11-79 (238)
19 1cxq_A Avian sarcoma virus int 29.1 1.7E+02 0.0057 26.2 8.2 70 254-329 12-81 (162)
20 2xv9_A ABA-1A1 repeat UNIT; li 26.2 73 0.0025 28.3 4.6 47 134-182 4-50 (134)
21 2xzm_O RPS13E; ribosome, trans 25.3 2E+02 0.007 25.9 7.3 32 154-185 32-63 (153)
22 3u5c_N S27A, YS15, 40S ribosom 23.8 2E+02 0.0069 25.9 6.9 31 154-184 30-60 (151)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.76 E-value=4.5e-19 Score=171.36 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=93.4
Q ss_pred cccccccccccCCCCCchHHHHHHhhcCCCccHHHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHhhcCCCCCCCCcccc
Q 003149 695 LRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHR 774 (844)
Q Consensus 695 ~~~~~~~~~~v~~dg~Cgfraia~~lg~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~w 774 (844)
++...+.+.+|+|||||+|||||.+|..+++.|..||+.++++|++++++|.+++. +.|+++++.|. .++.|
T Consensus 54 ~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~--~~~e~Y~~~m~------~~~~W 125 (185)
T 3pfy_A 54 RDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT--EDFTTYINRKR------KNNCH 125 (185)
T ss_dssp HHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------------
T ss_pred HHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHhh------CCCcc
Confidence 36788999999999999999999999999999999999999999999999999885 46999999986 67889
Q ss_pred ccCCCchhhhhcccCeeEEEEcCCcc-ccccCCCCCCCCCCCCCcEEEEEeCCCcEEEEEe
Q 003149 775 MIMPDTGHLIASRYNIVLMHLSQQQC-FTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLD 834 (844)
Q Consensus 775 ~~~~~~~~~~a~~~~~~v~~~~~~~~-~~~~p~~~~p~~~~~~~~i~l~~~~~~H~~~~~~ 834 (844)
.+.+.+ .++|..|++||++++...+ ...|+.. .....+||+|+|++++||+||.-
T Consensus 126 Gg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g~----~~~~~~~I~L~Y~~~~HYnSv~~ 181 (185)
T 3pfy_A 126 GNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHGI----HQNEDEPIRVSYHRNIHYNSVVN 181 (185)
T ss_dssp CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECTT----SCCTTSCEEEEEETTTEEEEEEC
T ss_pred chHHHH-HHHHHhhCCcEEEEECCCCCeEEecCc----cCCCCCEEEEEECCCCCcccccC
Confidence 998876 5999999999999997643 1222211 12226899999998899999874
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.72 E-value=2.2e-18 Score=171.71 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=106.9
Q ss_pred cccccccCCCCCchHHHHHHhhcCCCccHHHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHhhcCCCCCCCCccccccCC
Q 003149 699 IHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMP 778 (844)
Q Consensus 699 ~~~~~~v~~dg~Cgfraia~~lg~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~ 778 (844)
.+.+.+|+|||||+|||||++| .+++.|..||+.++++|++|+++|.+.+-+ ..|+++++.|. .+..|.+.+
T Consensus 19 ~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m~------~~~~WGg~i 90 (212)
T 3by4_A 19 VLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQWIL------KMESWGGAI 90 (212)
T ss_dssp EEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHHTT------STTSCCCHH
T ss_pred CeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHHhc------CCCEEccHH
Confidence 5678899999999999999999 789999999999999999999999755532 57999999997 678999988
Q ss_pred CchhhhhcccCeeEEEEcCC-ccccccCCCCCCCCCCCCCcEEEEEeCCCcEEEEEecCCCCCCC
Q 003149 779 DTGHLIASRYNIVLMHLSQQ-QCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPDFS 842 (844)
Q Consensus 779 ~~~~~~a~~~~~~v~~~~~~-~~~~~~p~~~~p~~~~~~~~i~l~~~~~~H~~~~~~~~~~~~~~ 842 (844)
.+ .+||..|++||++++.. .....| ++.. .+++|+|+|. +.||.+|++..+...||
T Consensus 91 EL-~Als~~~~~~I~V~~~~~~~~~~~----~~~~--~~~~I~L~Y~-g~HYdsl~~~~d~~~f~ 147 (212)
T 3by4_A 91 EI-GIISDALAVAIYVVDIDAVKIEKF----NEDK--FDNYILILFN-GIHYDSLTMNEFKTVFN 147 (212)
T ss_dssp HH-HHHHHHHTCEEEEEETTTTEEEEE----STTT--CSEEEEEEEC-SSCEEEEEETTTBCCEE
T ss_pred HH-HHHHHHHCCCEEEEECCCCCeEEe----CCCC--CCCeEEEEEc-CCcceEEecCCCcccCC
Confidence 77 59999999999999875 222222 2222 3579999997 79999999988888776
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.55 E-value=1.7e-15 Score=147.19 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=96.3
Q ss_pred ccccccCCCCCchHHHHHHhhcCC-Ccc-----HHHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHhhcCCCCCCCCccc
Q 003149 700 HDVQDVIADGHCGFRVVAELMDIG-EDN-----WAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEH 773 (844)
Q Consensus 700 ~~~~~v~~dg~Cgfraia~~lg~~-~~~-----~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 773 (844)
..|+.|+|||||.|||||.+|+.+ ++. |..||+.+++.|++|++++ +. +..|+++++.+. .++.
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~--~~--~~~~~~Y~~~m~------~~~~ 100 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRML------SDNE 100 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHH--HH--CCCHHHHHHHHT------STTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhh--hc--CCCHHHHHHHhh------CCCc
Confidence 346678999999999999999998 666 9999999999999999982 22 346999999997 6788
Q ss_pred cccCCCchhhhhcccCeeEEEEcCCccccccCC-CCCCCCCCCCCcEEEEEeCCCcEEEEEecCC
Q 003149 774 RMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPL-RSVPLPRTSRKIVTIGFVNECQFVKVLDFSQ 837 (844)
Q Consensus 774 w~~~~~~~~~~a~~~~~~v~~~~~~~~~~~~p~-~~~p~~~~~~~~i~l~~~~~~H~~~~~~~~~ 837 (844)
|.+..++ .++|..|+++|++++......++.. ..++... .++|.|+|..+.||.+|.+.++
T Consensus 101 WGg~iEL-~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~~--~~~I~L~Y~g~~HYdsl~~~~~ 162 (185)
T 3phx_A 101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFGDGDV--FTAVNLLHSGQTHFDALRILPQ 162 (185)
T ss_dssp CCBHHHH-HHHHHHHCCCEEEEEC--CCBCCEEEEESSCCT--TTSEEEEEETTTEEEEEEECGG
T ss_pred cCcHHHH-HHHHHHHCCcEEEEEecCCCCceEEEEcCCCCC--CCEEEEEECCCcCchhceECCC
Confidence 9998876 5999999999999986533211111 1122222 5789999986699999997543
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.54 E-value=3.1e-15 Score=148.06 Aligned_cols=127 Identities=12% Similarity=0.057 Sum_probs=97.9
Q ss_pred ccccccCCCCCchHHHHHHhhcCC-Ccc-----HHHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHhhcCCCCCCCCccc
Q 003149 700 HDVQDVIADGHCGFRVVAELMDIG-EDN-----WAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEH 773 (844)
Q Consensus 700 ~~~~~v~~dg~Cgfraia~~lg~~-~~~-----~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 773 (844)
..|+.|+|||||.|||||.+|+.+ ++. |..||+.+++.|++|++++ +. +..|+++++.+. .++.
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~--~~--~~~feeY~~~m~------~~g~ 100 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRML------SDNE 100 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHH--HH--CCCHHHHHHHHH------STTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhh--hc--CCCHHHHHHHhc------CCCc
Confidence 446778999999999999999998 566 8999999999999999982 22 346999999996 6788
Q ss_pred cccCCCchhhhhcccCeeEEEEcCCccc-cccCCCCCCCCCCCCCcEEEEEeCCCcEEEEEecCCCC
Q 003149 774 RMIMPDTGHLIASRYNIVLMHLSQQQCF-TFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTP 839 (844)
Q Consensus 774 w~~~~~~~~~~a~~~~~~v~~~~~~~~~-~~~p~~~~p~~~~~~~~i~l~~~~~~H~~~~~~~~~~~ 839 (844)
|.+...+ .++|..|+++|++++..... +......++... .++|.|+|..++||.+|.+.++..
T Consensus 101 WGG~iEL-~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~--~~~I~L~Y~g~~HYdSL~~~~d~~ 164 (219)
T 3phu_A 101 WGSTLEA-SMLAKEMGITIIIWTVAASDEVEAGIKFGDGDV--FTAVNLLHSGQTHFDALRILPQFE 164 (219)
T ss_dssp CCCHHHH-HHHHHHTTCCEEEEEESSSSBEEEEEEESSCCT--TTSEEEEEETTTEEEEEEECTTTC
T ss_pred cCCHHHH-HHHHHHhCCCEEEEEecCCCCceeEEEecCCCC--CCeEEEEECCCcCchhheECCCCC
Confidence 9998876 59999999999999654320 111111123222 578999998669999999866543
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.20 E-value=2.5e-11 Score=122.72 Aligned_cols=98 Identities=6% Similarity=-0.032 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHh-hcCCCCCCCCccccccCCCchhhhhcccCeeEEEEcCCcccc-ccC
Q 003149 728 AQVRRDLVDELQSHYDDYIQLYGDAEIARELLH-SLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFT-FLP 805 (844)
Q Consensus 728 ~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~~a~~~~~~v~~~~~~~~~~-~~p 805 (844)
..+|.....+|++|+++|.+++.++..+++++. .+. +...|.+...+ .+||+++++||.++..+.+.. .-+
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve------~~~~~~~~iei-~ALa~aL~v~I~V~~~d~~~~~~~~ 205 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE------PMATECDHIQI-TALSQALSIALQVEYVDEMDTALNH 205 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS------STTCCCCHHHH-HHHHHHHTCCEEEEECC-------C
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhh------hhhcccccHHH-HHHHHHhCCCEEEEEcCCCCCcccc
Confidence 346777789999999999999966557999998 776 67889887766 599999999999998765531 112
Q ss_pred CCCCCCCCCCCCcEEEEEeCCCcEEEEEecC
Q 003149 806 LRSVPLPRTSRKIVTIGFVNECQFVKVLDFS 836 (844)
Q Consensus 806 ~~~~p~~~~~~~~i~l~~~~~~H~~~~~~~~ 836 (844)
...++ .. .|.|+|+|.+ .||.+|+...
T Consensus 206 ~~~~~-~~--~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 206 HVFPE-AA--TPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp CCCCC-CS--SCSEEEEEET-TEEEEEEECC
T ss_pred ccCCC-CC--CCeEEEEECC-CCceecccCC
Confidence 22222 22 5779999985 5999999764
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=98.91 E-value=1.2e-09 Score=110.74 Aligned_cols=95 Identities=7% Similarity=-0.048 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHh-hcCCCCCCCCccccccCCCchhhhhcccCeeEEEEcCCcccc--ccC
Q 003149 729 QVRRDLVDELQSHYDDYIQLYGDAEIARELLH-SLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFT--FLP 805 (844)
Q Consensus 729 ~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~~a~~~~~~v~~~~~~~~~~--~~p 805 (844)
.+|......|++|+++|.+++.++..+++++. .+. +.+.|.+...+ .+||+++++||.++..+.+.. .-+
T Consensus 137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve------~~~~~~~~i~i-~ALa~al~v~I~V~~~d~~~~~~v~~ 209 (234)
T 2zfy_A 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVE------PMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTTNP 209 (234)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTS------STTCCCCHHHH-HHHHHHHTCCEEEEECC-CCSSCCEE
T ss_pred HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhh------hHhhcCCHHHH-HHHHHHhCCCEEEEEcCCCCCCcccc
Confidence 34555667899999999999976668999996 575 67889887766 599999999999988655431 111
Q ss_pred CCCCCCCCCCCCcEEEEEeCCCcEEEEEe
Q 003149 806 LRSVPLPRTSRKIVTIGFVNECQFVKVLD 834 (844)
Q Consensus 806 ~~~~p~~~~~~~~i~l~~~~~~H~~~~~~ 834 (844)
...++ .. .|.|+|+|.+ .||.+|+.
T Consensus 210 ~~f~~-~~--~p~I~LlY~p-gHYdiLy~ 234 (234)
T 2zfy_A 210 HIFPE-GS--EPKVYLLYRP-GHYDILYK 234 (234)
T ss_dssp EEEST-TC--CCSEEEEEET-TEEEEEEC
T ss_pred eeCCC-CC--CCeEEEEECC-CCcccCCC
Confidence 11122 22 5789999985 69999873
No 7
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.85 E-value=1e-08 Score=105.24 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=94.7
Q ss_pred ccCCCCCchHHHHHHhhcCCCccHHHHHHHHHHHHHhhh--hhHHH-----h----h-------C---CHHHHHHHHhhc
Q 003149 704 DVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHY--DDYIQ-----L----Y-------G---DAEIARELLHSL 762 (844)
Q Consensus 704 ~v~~dg~Cgfraia~~lg~~~~~~~~vr~~l~~el~~~~--~~y~~-----~----~-------~---~~~~~~~~~~~l 762 (844)
...|||||..+|++.+|.+-.|.-..+|+.|..-|++.. ..+.. . + . -..+|+.++...
T Consensus 116 ~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~A 195 (390)
T 3dkb_A 116 KTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMA 195 (390)
T ss_dssp CCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHHT
T ss_pred EecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999998743 21110 0 0 0 135788888887
Q ss_pred CCCCCCCCccccc-cCCC-chhhhhcccCeeEEEEcC--------C-------ccccccCCCCCCCCCCCCCcEEEEEeC
Q 003149 763 SYSESNPGIEHRM-IMPD-TGHLIASRYNIVLMHLSQ--------Q-------QCFTFLPLRSVPLPRTSRKIVTIGFVN 825 (844)
Q Consensus 763 ~~~~~~~~~~~w~-~~~~-~~~~~a~~~~~~v~~~~~--------~-------~~~~~~p~~~~p~~~~~~~~i~l~~~~ 825 (844)
+.+......+.=+ ++-. |-++|||.+.||||+|+. + .+.+|||+..||.... ..||+|||.+
T Consensus 196 sp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~-rsPI~LgY~s 274 (390)
T 3dkb_A 196 STDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECY-RYPIVLGYDS 274 (390)
T ss_dssp SSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSC-SSCEEEEECS
T ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHcc-CCceEEEecc
Confidence 5443322222222 2222 667899999999999962 1 1689999999986665 4689999985
Q ss_pred CCcEEEEEec
Q 003149 826 ECQFVKVLDF 835 (844)
Q Consensus 826 ~~H~~~~~~~ 835 (844)
+||.+|+..
T Consensus 275 -~HFsaLV~m 283 (390)
T 3dkb_A 275 -HHFVPLVTL 283 (390)
T ss_dssp -SCEEEEEEB
T ss_pred -Cceeeeeec
Confidence 899999963
No 8
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=98.83 E-value=6.4e-09 Score=106.16 Aligned_cols=99 Identities=6% Similarity=-0.011 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhCCHHHHHHHHh-hcCCCCCCCCccccccCCCchhhhhcccCeeEEEEcCCcc-------c
Q 003149 730 VRRDLVDELQSHYDDYIQLYGDAEIARELLH-SLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQC-------F 801 (844)
Q Consensus 730 vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~~a~~~~~~v~~~~~~~~-------~ 801 (844)
+|.....+|++|+++|.+++.+...+++++. .+. +..+|.+...+. +||+++++||-+.-.+.+ .
T Consensus 173 LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe------~~~~e~d~leI~-ALa~aL~v~I~V~ylDrs~g~~v~~h 245 (284)
T 4dhi_B 173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIE------PMWKDADHLAIN-SLIKAAGTRVRIEYMDRTAAPNGGWH 245 (284)
T ss_dssp HHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTS------STTCCCCHHHHH-HHHHHTTCCEEEEESSGGGCTTSSSE
T ss_pred HHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhce------ehhhcccHHHHH-HHHHHhCCcEEEEEecCCCCCCCccc
Confidence 4556667889999999999976567899998 776 788999888775 999999999987654322 1
Q ss_pred cccCCCCCCCCCCCCCcEEEEEeCCCcEEEEEecCCCCC
Q 003149 802 TFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPD 840 (844)
Q Consensus 802 ~~~p~~~~p~~~~~~~~i~l~~~~~~H~~~~~~~~~~~~ 840 (844)
..||--.. +..|.|.|.|- +.||-.||..++.|.
T Consensus 246 ~~fp~~~~----~~~p~I~LLYr-pgHYDILY~~~p~~~ 279 (284)
T 4dhi_B 246 YDIPSDDQ----QIAPEITLLYR-PGHYDVIYKKDSTEA 279 (284)
T ss_dssp EEESCCCS----CCCCSEEEEEE-TTEEEEEEECC----
T ss_pred ccCCCCCC----CCCCEEEEeec-CCCccccccCCCCch
Confidence 20354321 12467999998 579999999887764
No 9
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.65 E-value=1.1e-07 Score=99.28 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=91.0
Q ss_pred cCCCCCchHHHHHHhhcCCCccHHHHHHHHHHHHHhhhh-hHH------H----hhC-----CH----HHHHHHHhhcCC
Q 003149 705 VIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYD-DYI------Q----LYG-----DA----EIARELLHSLSY 764 (844)
Q Consensus 705 v~~dg~Cgfraia~~lg~~~~~~~~vr~~l~~el~~~~~-~y~------~----~~~-----~~----~~~~~~~~~l~~ 764 (844)
..|||||..+|++..|.+-.|....+|+.|..-|++... +|. . .++ ++ .+|+.++...+.
T Consensus 194 t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As~ 273 (454)
T 3zrh_A 194 NRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLASQ 273 (454)
T ss_dssp CCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTS
T ss_pred ecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999999986332 221 1 111 22 346666666543
Q ss_pred CCCCCCccccccCCC-chhhhhcccCeeEEEEcC--------------CccccccCCCCCCCCCCCCCcEEEEEeCCCcE
Q 003149 765 SESNPGIEHRMIMPD-TGHLIASRYNIVLMHLSQ--------------QQCFTFLPLRSVPLPRTSRKIVTIGFVNECQF 829 (844)
Q Consensus 765 ~~~~~~~~~w~~~~~-~~~~~a~~~~~~v~~~~~--------------~~~~~~~p~~~~p~~~~~~~~i~l~~~~~~H~ 829 (844)
++ . ++-. |-++|||.++||||+|+. ..+..|||+..+|.-.. ..||+|||.+ .||
T Consensus 274 Pg------~--sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~-rsPIvLgY~~-gHF 343 (454)
T 3zrh_A 274 PG------A--SLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCW-KSPIALGYTR-GHF 343 (454)
T ss_dssp TT------C--CCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSC-SCCEEEEEET-TEE
T ss_pred Cc------c--hHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhc-CCceEEEecc-cce
Confidence 21 1 2222 678899999999999984 12469999999986554 4689999986 699
Q ss_pred EEEEecCC
Q 003149 830 VKVLDFSQ 837 (844)
Q Consensus 830 ~~~~~~~~ 837 (844)
.+|+...+
T Consensus 344 saLV~~~~ 351 (454)
T 3zrh_A 344 SALVAMEN 351 (454)
T ss_dssp EEEEEBCC
T ss_pred eeeeeccc
Confidence 99997543
No 10
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.57 E-value=4.3e-08 Score=107.71 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHh-hcCCCCCCCCccccccCCCchhhhhcccCeeEEEEcCCcc--ccc
Q 003149 727 WAQVRRDLVDELQSHYDDYIQLYGDAEIARELLH-SLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQC--FTF 803 (844)
Q Consensus 727 ~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~-~l~~~~~~~~~~~w~~~~~~~~~~a~~~~~~v~~~~~~~~--~~~ 803 (844)
...+|..-..+|++|+++|.+++.+...+++++. .+. +.+.|.+...+ .+||++++++|.++-.+.+ ...
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve------~~~~e~d~l~I-~ALa~al~v~I~V~yld~~~~~~v 372 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVE------PMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTT 372 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTS------STTCCBCHHHH-HHHHHHHTCCCEEEECSCCSSSCC
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhce------eHHhhCcHHHH-HHHHHHcCCcEEEEEcCCCCCCcc
Confidence 3446777778899999999999866557888888 776 77889888877 4999999999988743322 111
Q ss_pred cCCCCCCCCCCCCCcEEEEEeCCCcEEEEEe
Q 003149 804 LPLRSVPLPRTSRKIVTIGFVNECQFVKVLD 834 (844)
Q Consensus 804 ~p~~~~p~~~~~~~~i~l~~~~~~H~~~~~~ 834 (844)
-+... |... .+.|+|.|- +.||..||.
T Consensus 373 ~~~~~-~~~~--~~~I~LLYr-PgHYDiLY~ 399 (399)
T 4ddg_A 373 NPHIF-PEGS--EPKVYLLYR-PGHYDILYK 399 (399)
T ss_dssp CEEET-TTTC--CCCCEEEEE-TBEEEEEEC
T ss_pred ceeeC-CCCC--CCEEEEEEc-CCccccCCC
Confidence 11222 2222 577999997 579999873
No 11
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=95.77 E-value=0.04 Score=44.01 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=46.0
Q ss_pred cCeEEEEEeecCCCCCCCceEEEEEecCCccCCCCCCCCCCCCCCCCCceeeCCccEEEEEeeCCCCCeEEEEEccccCC
Q 003149 59 NGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNH 138 (844)
Q Consensus 59 ~GF~v~~~~S~~~~~g~~~~~~~vC~r~G~~r~~~~~~~~~~~rr~~~s~~~gCp~~i~~~~~~~~~~w~v~~~~~~HNH 138 (844)
-||..|+-..+..++...-|.+|.|+. .|||++=.+.+...+....++.+.++|||
T Consensus 16 DGy~WRKYGQK~ikgs~~PRsYYrCt~------------------------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H 71 (76)
T 2ayd_A 16 DGYRWRKYGQKSVKGSPYPRSYYRCSS------------------------PGCPVKKHVERSSHDTKLLITTYEGKHDH 71 (76)
T ss_dssp CSSCEEEEEEECCTTCSSCEEEEEECS------------------------TTCCCEEEEEECSSSTTEEEEEEESCCSS
T ss_pred CCchhhhCcccccCCCCCceeEeEcCC------------------------CCCCceeeEEEECCCCCEEEEEEccCcCC
Confidence 477788766666666666678888832 38999988888777888999999999999
Q ss_pred CCC
Q 003149 139 PVT 141 (844)
Q Consensus 139 ~~~ 141 (844)
+..
T Consensus 72 ~~p 74 (76)
T 2ayd_A 72 DMP 74 (76)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 12
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=94.95 E-value=0.048 Score=43.73 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=45.2
Q ss_pred cCeEEEEEeecCCCCCCCceEEEEEecCCccCCCCCCCCCCCCCCCCCceeeCCccEEEEEeeCCCCCeEEEEEccccCC
Q 003149 59 NGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNH 138 (844)
Q Consensus 59 ~GF~v~~~~S~~~~~g~~~~~~~vC~r~G~~r~~~~~~~~~~~rr~~~s~~~gCp~~i~~~~~~~~~~w~v~~~~~~HNH 138 (844)
-||..|+-..+..++...-|.+|.|+. .||+++=.+.+...+....++.+.++|||
T Consensus 19 DGy~WRKYGQK~ikgs~~PRsYYrCt~------------------------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H 74 (78)
T 1wj2_A 19 DGYRWRKYGQKVVKGNPYPRSYYKCTT------------------------PGCGVRKHVERAATDPKAVVTTYEGKHNH 74 (78)
T ss_dssp SSSCBCCCEEECCTTCSSCEEEEEEEC------------------------SSCEEEEEEEEETTTTSEEEEEEESCCSS
T ss_pred CCchhhhCcccccCCCcCeeEEeecCc------------------------CCCCcEeeEEEEcCCCCEEEEEEeeEcCC
Confidence 467777655555555566678889943 38999988888777888889999999999
Q ss_pred CCC
Q 003149 139 PVT 141 (844)
Q Consensus 139 ~~~ 141 (844)
++.
T Consensus 75 ~~p 77 (78)
T 1wj2_A 75 DLP 77 (78)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
No 13
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=88.30 E-value=0.89 Score=37.67 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=30.1
Q ss_pred cCeEEEEEeecCCCCCCCceEEEEEecCCccCCCCCCCCCCCCCCCCCceeeCCccEEEEEeeCCCCCeEEEEEccccCC
Q 003149 59 NGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNH 138 (844)
Q Consensus 59 ~GF~v~~~~S~~~~~g~~~~~~~vC~r~G~~r~~~~~~~~~~~rr~~~s~~~gCp~~i~~~~~~~~~~w~v~~~~~~HNH 138 (844)
.||.+...+.... ..++.|++.. ..+|++++.... + . +. ....|||
T Consensus 26 ~Gy~Y~~~~~~~~------~~yWrC~~~~---------------------~~kCrARi~T~~---~-~--~~-~~~~HnH 71 (87)
T 2rpr_A 26 ESFLYRKEKAAGE------KVYWMCRDQA---------------------RLGCRSRAITQG---H-R--IM-VMRSHCH 71 (87)
T ss_dssp TTEEEEEEEECSS------CEEEEEGGGT---------------------TSCCCCEEEEET---T-E--EE-ECSCCSS
T ss_pred CCEEEEeeecCCC------cEEEEecCCC---------------------CCCCCEEEEEcC---C-C--EE-CCCCcCC
Confidence 5677776554332 4678885521 137999987532 2 2 32 5678999
Q ss_pred CCC
Q 003149 139 PVT 141 (844)
Q Consensus 139 ~~~ 141 (844)
++.
T Consensus 72 ~p~ 74 (87)
T 2rpr_A 72 QPD 74 (87)
T ss_dssp CCC
T ss_pred CCc
Confidence 874
No 14
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=63.34 E-value=1.4e+02 Score=30.78 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHhcCCCccchHHHHHHHHHHhhh
Q 003149 155 EQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRV 201 (844)
Q Consensus 155 ~~~~~~i~~l~~~~~~p~~I~~~l~~~~~~~~~t~kdi~n~~~~~r~ 201 (844)
.+.+..|..+...|.+..+|...|.+.++....+...+++..++++.
T Consensus 9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 34566777788899999999999998887666677888888888765
No 15
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=56.73 E-value=28 Score=30.99 Aligned_cols=66 Identities=11% Similarity=-0.031 Sum_probs=42.9
Q ss_pred CcEEEEeccccCCCCCCeeEEEEEecCCCCceeeEEEeeccCccchHHHHHHHHHHhhcCCCCCeEEEeeccHHHHH
Q 003149 253 PSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMN 329 (844)
Q Consensus 253 ~~vl~iD~T~~tn~~~~~l~~~~g~~~~~~~~~~a~al~~~E~~es~~w~l~~lk~~~~~~~~P~~iitD~~~al~~ 329 (844)
.+++.+|.|+..+ .+.++.+|..-+.. +++.+ .+++.+....+|..+.... + |++|.+|......+
T Consensus 2 n~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g--p~~i~sDnG~~f~s 67 (152)
T 3kks_A 2 SHLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY--T--VLHLHSDNGPCFTA 67 (152)
T ss_dssp CCEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS--C--CSEEEECSCHHHHS
T ss_pred CcEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh--C--CcEEecCCchHhhH
Confidence 3688899998732 25566666655443 55554 4666666665555544443 2 99999999987654
No 16
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=41.26 E-value=84 Score=24.94 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=24.3
Q ss_pred cccCCCCCCCcccCccccCCCHHHHHHHHHHhhCCCChHHHHHHHH
Q 003149 134 GVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLK 179 (844)
Q Consensus 134 ~~HNH~~~~~~~~~~~~rrl~~~~~~~i~~l~~~~~~p~~I~~~l~ 179 (844)
..|+|++..+.........|++.+++.+.. .-.|.+.++|.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~l-~~~g~s~~eIA~~l~ 47 (82)
T 1je8_A 3 GSHHHHHHGSATTERDVNQLTPRERDILKL-IAQGLPNKMIARRLD 47 (82)
T ss_dssp --------------CCGGGSCHHHHHHHHH-HTTTCCHHHHHHHHT
T ss_pred CccCCCCCCchHHHHHHccCCHHHHHHHHH-HHcCCCHHHHHHHHC
Confidence 346666665544444446799998877766 478999999998773
No 17
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=35.50 E-value=82 Score=30.16 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=41.7
Q ss_pred cEEEEeccccCCCCCCeeEEEEEecCCCCceeeEEEeeccCccchHHHHHHHHHHhhcCCCCCeEEEeeccHHHHHH
Q 003149 254 SVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNS 330 (844)
Q Consensus 254 ~vl~iD~T~~tn~~~~~l~~~~g~~~~~~~~~~a~al~~~E~~es~~w~l~~lk~~~~~~~~P~~iitD~~~al~~A 330 (844)
+++.+|.|+..++ +.++.+|..-+.. .++. +.+.+......+|..+.... + |.+|+||........
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~-g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMF-A---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHH-C---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHh-C---CcEEEeCCCchhhhH
Confidence 6778888865432 5566666655544 5554 45556655555555544443 3 999999999876543
No 18
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=32.65 E-value=1.2e+02 Score=29.64 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=44.4
Q ss_pred cEEEEeccccCCCCCCeeEEEEEecCCCCceeeEEEeeccCccchHHHHHHHHHHhhcCCCCCeEEEeeccHHHH
Q 003149 254 SVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALM 328 (844)
Q Consensus 254 ~vl~iD~T~~tn~~~~~l~~~~g~~~~~~~~~~a~al~~~E~~es~~w~l~~lk~~~~~~~~P~~iitD~~~al~ 328 (844)
.++.+|.|+.....+ ..+.++.+|..-+ +.+++.+- +++.+....+|..+.... + .|.+|.+|......
T Consensus 11 ~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~-g--~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 11 QIWQTDFTLEPRMAP-RSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVL-G--RPKAIKTDNGSCFT 79 (238)
T ss_dssp SEEEEEEEECGGGCS-SCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHH-C--CCSEEEECSCHHHH
T ss_pred CEEEEeeccccccCC-CEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHh-C--CCcEEEECCCCccc
Confidence 689999998654333 3445555665443 55667665 666666666665554443 2 48899999998754
No 19
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=29.10 E-value=1.7e+02 Score=26.24 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=43.4
Q ss_pred cEEEEeccccCCCCCCeeEEEEEecCCCCceeeEEEeeccCccchHHHHHHHHHHhhcCCCCCeEEEeeccHHHHH
Q 003149 254 SVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMN 329 (844)
Q Consensus 254 ~vl~iD~T~~tn~~~~~l~~~~g~~~~~~~~~~a~al~~~E~~es~~w~l~~lk~~~~~~~~P~~iitD~~~al~~ 329 (844)
.++.+|.|+.....+ ..+.++.+|..-+ ..+++.+- +.+.+....+|..+.... ..|.+|.+|......+
T Consensus 12 ~~~~~D~~~~~~~~g-~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~---g~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 12 QIWQTDFTLEPRMAP-RSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVL---GRPKAIKTDNGSCFTS 81 (162)
T ss_dssp CEEEEEEEECGGGTT-SCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHH---CCCSEEECCSCHHHHS
T ss_pred CEEEeeeeecccCCC-CEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHH---CCCeEEEeCCchhhhh
Confidence 688999988643332 3455566676544 44566654 555555555554444433 2488999999987653
No 20
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=26.20 E-value=73 Score=28.30 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=37.5
Q ss_pred cccCCCCCCCcccCccccCCCHHHHHHHHHHhhCCCChHHHHHHHHhcC
Q 003149 134 GVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRD 182 (844)
Q Consensus 134 ~~HNH~~~~~~~~~~~~rrl~~~~~~~i~~l~~~~~~p~~I~~~l~~~~ 182 (844)
.+|.|.+......+. ..|+++++..|..|...|-+..+|+..|-+.+
T Consensus 4 ~~~~~~le~~~~~~L--sWLt~eQk~EI~kMk~~gksk~~v~~KI~efy 50 (134)
T 2xv9_A 4 EFHHFTLESSLDTHL--KWLSQEQKDELLKMKKDGKAKKELEAKILHYY 50 (134)
T ss_dssp TTSSSCSGGGTTTTT--TTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH--HHCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356777766655554 57999999999999999999999998887765
No 21
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=25.35 E-value=2e+02 Score=25.85 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHhhCCCChHHHHHHHHhcCCCc
Q 003149 154 TEQEANILVDLSRSNISPKEILQTLKQRDMHN 185 (844)
Q Consensus 154 ~~~~~~~i~~l~~~~~~p~~I~~~l~~~~~~~ 185 (844)
.++..+.|..|.+.|.+|.+|-..|+++++..
T Consensus 32 ~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp 63 (153)
T 2xzm_O 32 PSTVVDLSVKLAKKGLTPSQIGVILRDQHGIP 63 (153)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCC
Confidence 45567888999999999999999999998643
No 22
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=23.76 E-value=2e+02 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHhhCCCChHHHHHHHHhcCCC
Q 003149 154 TEQEANILVDLSRSNISPKEILQTLKQRDMH 184 (844)
Q Consensus 154 ~~~~~~~i~~l~~~~~~p~~I~~~l~~~~~~ 184 (844)
.++..+.|..|.+.|.+|.+|-..|+++++.
T Consensus 30 ~eeVe~~I~klakkG~tpSqIG~iLRD~~GI 60 (151)
T 3u5c_N 30 SESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHhccCCC
Confidence 4556788899999999999999999998864
Done!