Query 003150
Match_columns 844
No_of_seqs 775 out of 4917
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 17:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-119 2E-124 1067.2 82.4 730 109-840 48-780 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 5.2E-93 1.1E-97 840.0 73.1 640 45-689 85-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.8E-88 3.9E-93 782.1 60.7 533 311-843 84-620 (697)
4 PLN03218 maturation of RBCL 1; 100.0 4.2E-69 9.1E-74 620.7 51.8 528 77-653 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-68 5E-73 614.6 56.7 523 180-721 368-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-68 3.1E-73 616.7 53.9 474 210-686 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-37 2.6E-42 378.6 77.3 722 47-784 126-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-37 3.9E-42 377.1 78.2 714 52-780 165-897 (899)
9 PRK11447 cellulose synthase su 100.0 6.3E-24 1.4E-28 257.7 65.0 652 47-785 29-743 (1157)
10 PRK11447 cellulose synthase su 100.0 2.5E-23 5.4E-28 252.6 61.4 622 118-784 34-701 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.4E-21 3E-26 225.8 59.9 641 93-782 56-739 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2.3E-20 4.9E-25 215.7 58.4 664 60-770 58-760 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 6.2E-19 1.3E-23 179.6 39.1 442 317-772 51-508 (966)
14 PRK11788 tetratricopeptide rep 99.8 7.1E-19 1.5E-23 190.8 29.1 304 494-803 44-367 (389)
15 KOG4626 O-linked N-acetylgluco 99.8 1.4E-18 2.9E-23 177.2 27.4 411 359-782 58-484 (966)
16 KOG2002 TPR-containing nuclear 99.8 1.1E-15 2.4E-20 164.9 49.3 671 62-785 24-800 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-16 3.7E-21 181.2 45.6 250 529-783 307-571 (615)
18 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.4E-22 181.4 28.0 297 323-689 44-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 3.1E-14 6.7E-19 154.0 50.4 627 47-714 42-742 (1018)
20 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.6E-20 176.1 41.4 183 598-782 249-455 (765)
21 PRK10049 pgaA outer membrane p 99.8 3.4E-15 7.4E-20 173.6 44.0 402 348-757 14-464 (765)
22 KOG4318 Bicoid mRNA stability 99.8 8.1E-15 1.8E-19 156.2 41.7 601 133-778 11-675 (1088)
23 PRK15174 Vi polysaccharide exp 99.8 2.3E-15 4.9E-20 171.1 39.8 328 418-754 45-386 (656)
24 KOG4318 Bicoid mRNA stability 99.8 3E-14 6.5E-19 152.0 41.4 659 67-784 11-809 (1088)
25 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-14 3.1E-19 165.5 41.9 269 498-782 307-596 (615)
26 PRK15174 Vi polysaccharide exp 99.8 4.1E-15 8.9E-20 169.0 37.0 325 450-784 42-382 (656)
27 KOG4422 Uncharacterized conser 99.7 1.3E-13 2.8E-18 135.3 36.2 449 112-618 116-593 (625)
28 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.1E-18 154.7 44.0 436 292-757 43-521 (822)
29 PRK14574 hmsH outer membrane p 99.7 3.1E-13 6.7E-18 153.8 44.2 432 323-783 43-513 (822)
30 KOG4422 Uncharacterized conser 99.7 1E-12 2.2E-17 129.2 39.0 331 214-585 117-467 (625)
31 KOG0495 HAT repeat protein [RN 99.7 1.4E-10 3E-15 120.4 53.4 490 257-797 385-892 (913)
32 KOG2076 RNA polymerase III tra 99.7 4.3E-11 9.3E-16 129.3 51.6 612 126-778 153-890 (895)
33 KOG2003 TPR repeat-containing 99.6 4.7E-13 1E-17 132.1 30.8 272 494-771 428-711 (840)
34 KOG2076 RNA polymerase III tra 99.6 3.4E-10 7.3E-15 122.5 48.8 312 60-375 153-509 (895)
35 KOG0495 HAT repeat protein [RN 99.5 1.3E-08 2.8E-13 106.2 51.3 432 334-781 366-844 (913)
36 PF13429 TPR_15: Tetratricopep 99.5 2.6E-14 5.6E-19 146.4 10.2 253 524-781 16-275 (280)
37 COG2956 Predicted N-acetylgluc 99.5 2.9E-11 6.2E-16 115.2 28.1 314 426-806 46-370 (389)
38 KOG2003 TPR repeat-containing 99.5 1.7E-10 3.7E-15 114.3 32.6 436 320-783 207-689 (840)
39 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 109.4 38.2 478 296-782 86-624 (677)
40 KOG0547 Translocase of outer m 99.5 8.4E-11 1.8E-15 118.1 29.6 187 589-780 363-563 (606)
41 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.5E-15 115.4 30.4 358 379-779 159-532 (559)
42 KOG0985 Vesicle coat protein c 99.4 2E-07 4.4E-12 101.7 51.9 649 72-767 504-1326(1666)
43 KOG1126 DNA-binding cell divis 99.4 2.5E-11 5.4E-16 127.1 21.7 275 500-784 334-621 (638)
44 KOG1126 DNA-binding cell divis 99.4 2.9E-11 6.2E-16 126.7 20.7 245 531-784 334-587 (638)
45 TIGR00540 hemY_coli hemY prote 99.4 8.9E-10 1.9E-14 119.0 32.0 219 523-748 160-398 (409)
46 PRK10747 putative protoheme IX 99.4 1.3E-09 2.7E-14 117.1 32.8 143 601-749 244-390 (398)
47 PRK10747 putative protoheme IX 99.4 4.7E-10 1E-14 120.4 29.3 217 492-714 160-387 (398)
48 KOG0985 Vesicle coat protein c 99.4 1.4E-06 3.1E-11 95.4 54.2 674 88-794 367-1260(1666)
49 KOG1155 Anaphase-promoting com 99.4 9.2E-09 2E-13 103.2 34.9 254 523-782 234-494 (559)
50 TIGR00540 hemY_coli hemY prote 99.4 5E-10 1.1E-14 120.9 28.6 283 427-714 96-396 (409)
51 KOG1173 Anaphase-promoting com 99.4 2.1E-09 4.6E-14 110.5 30.8 274 482-761 241-530 (611)
52 PF13429 TPR_15: Tetratricopep 99.3 4.3E-12 9.3E-17 130.0 10.7 250 491-748 14-276 (280)
53 TIGR02521 type_IV_pilW type IV 99.3 2.8E-10 6.1E-15 113.6 22.9 198 584-782 29-231 (234)
54 KOG1915 Cell cycle control pro 99.3 5.3E-08 1.1E-12 97.9 37.4 437 317-765 76-551 (677)
55 KOG4162 Predicted calmodulin-b 99.3 1.5E-07 3.3E-12 100.7 40.8 396 378-783 317-783 (799)
56 KOG2047 mRNA splicing factor [ 99.3 2E-06 4.4E-11 90.1 46.8 432 82-584 103-582 (835)
57 KOG3785 Uncharacterized conser 99.2 5.1E-08 1.1E-12 94.3 30.8 438 291-790 65-521 (557)
58 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.6E-16 86.8 6.1 50 211-260 1-50 (50)
59 COG3071 HemY Uncharacterized e 99.2 2.3E-08 5E-13 99.0 29.0 286 428-748 97-389 (400)
60 KOG2047 mRNA splicing factor [ 99.2 2.6E-06 5.5E-11 89.4 44.5 174 182-361 102-293 (835)
61 KOG3616 Selective LIM binding 99.2 9.4E-07 2E-11 93.4 40.6 203 558-782 798-1023(1636)
62 PF13041 PPR_2: PPR repeat fam 99.2 5.3E-11 1.2E-15 84.7 6.8 50 615-664 1-50 (50)
63 KOG2376 Signal recognition par 99.2 2.7E-07 5.9E-12 95.8 36.0 365 394-778 89-515 (652)
64 KOG1840 Kinesin light chain [C 99.2 5.1E-09 1.1E-13 111.5 24.3 230 552-781 200-477 (508)
65 KOG1174 Anaphase-promoting com 99.2 8.1E-07 1.8E-11 88.1 36.3 306 446-757 190-508 (564)
66 PRK12370 invasion protein regu 99.2 7.8E-09 1.7E-13 116.1 25.5 211 565-783 318-535 (553)
67 COG2956 Predicted N-acetylgluc 99.1 4.4E-08 9.5E-13 93.9 25.2 251 529-783 48-312 (389)
68 COG3071 HemY Uncharacterized e 99.1 4.2E-08 9.2E-13 97.2 25.7 215 560-778 127-352 (400)
69 KOG1173 Anaphase-promoting com 99.1 4.4E-07 9.4E-12 93.9 33.2 273 419-732 248-534 (611)
70 KOG0547 Translocase of outer m 99.1 6.1E-07 1.3E-11 91.0 32.7 212 497-749 338-566 (606)
71 TIGR02521 type_IV_pilW type IV 99.1 2.8E-08 6.1E-13 99.1 23.7 198 516-751 31-234 (234)
72 PRK11189 lipoprotein NlpI; Pro 99.1 2.2E-08 4.8E-13 102.7 23.1 212 565-784 40-266 (296)
73 COG3063 PilF Tfp pilus assembl 99.1 1.2E-08 2.5E-13 93.5 17.8 162 619-785 37-204 (250)
74 KOG4162 Predicted calmodulin-b 99.1 1.7E-06 3.6E-11 93.0 36.5 441 277-755 317-789 (799)
75 PRK12370 invasion protein regu 99.1 2.1E-08 4.5E-13 112.7 23.5 177 599-782 317-501 (553)
76 KOG1129 TPR repeat-containing 99.0 1.3E-08 2.9E-13 97.2 17.6 224 520-784 227-459 (478)
77 KOG1840 Kinesin light chain [C 99.0 8E-08 1.7E-12 102.5 22.7 162 587-748 284-478 (508)
78 KOG3616 Selective LIM binding 99.0 1.9E-06 4.1E-11 91.2 32.0 187 526-742 742-930 (1636)
79 KOG2376 Signal recognition par 99.0 5.2E-06 1.1E-10 86.6 34.7 431 189-673 19-512 (652)
80 KOG3785 Uncharacterized conser 99.0 1E-06 2.3E-11 85.4 27.2 267 160-441 35-311 (557)
81 PRK11189 lipoprotein NlpI; Pro 98.9 2.3E-07 5E-12 95.2 24.0 195 561-763 74-280 (296)
82 KOG1127 TPR repeat-containing 98.9 9.7E-05 2.1E-09 81.9 43.8 636 82-767 493-1193(1238)
83 COG3063 PilF Tfp pilus assembl 98.9 6E-07 1.3E-11 82.5 21.3 203 519-760 38-247 (250)
84 KOG1156 N-terminal acetyltrans 98.9 7.8E-05 1.7E-09 78.9 38.8 441 327-780 20-508 (700)
85 KOG1129 TPR repeat-containing 98.9 7.3E-08 1.6E-12 92.3 14.8 234 489-760 227-469 (478)
86 KOG3617 WD40 and TPR repeat-co 98.8 0.00019 4.2E-09 77.7 41.4 259 110-409 724-992 (1416)
87 KOG3617 WD40 and TPR repeat-co 98.8 8E-05 1.7E-09 80.5 38.3 150 179-340 723-884 (1416)
88 KOG1174 Anaphase-promoting com 98.8 2.6E-06 5.6E-11 84.6 24.9 228 548-780 191-464 (564)
89 KOG1127 TPR repeat-containing 98.8 5E-05 1.1E-09 84.0 36.1 270 503-778 801-1099(1238)
90 KOG0624 dsRNA-activated protei 98.8 2E-05 4.4E-10 76.5 27.9 313 389-760 43-381 (504)
91 KOG0548 Molecular co-chaperone 98.8 2E-05 4.3E-10 81.6 29.7 167 592-767 304-473 (539)
92 KOG1156 N-terminal acetyltrans 98.7 0.00034 7.4E-09 74.3 37.8 437 261-746 20-508 (700)
93 PF12569 NARP1: NMDA receptor- 98.7 2.4E-05 5.1E-10 85.0 28.6 280 495-781 14-332 (517)
94 PF04733 Coatomer_E: Coatomer 98.6 8.3E-07 1.8E-11 89.6 16.1 246 495-782 11-264 (290)
95 KOG4340 Uncharacterized conser 98.6 1.1E-05 2.4E-10 76.7 22.1 404 352-782 13-442 (459)
96 TIGR03302 OM_YfiO outer membra 98.6 2.2E-06 4.8E-11 85.4 19.0 178 586-783 33-232 (235)
97 KOG0548 Molecular co-chaperone 98.6 5.9E-05 1.3E-09 78.3 29.0 419 322-783 10-455 (539)
98 PF04733 Coatomer_E: Coatomer 98.6 1.6E-06 3.5E-11 87.5 17.6 247 460-719 11-268 (290)
99 KOG1125 TPR repeat-containing 98.6 9.5E-07 2E-11 91.9 15.4 192 586-779 319-523 (579)
100 PRK15359 type III secretion sy 98.6 8.6E-07 1.9E-11 79.7 13.3 121 638-765 14-137 (144)
101 cd05804 StaR_like StaR_like; a 98.6 5.4E-05 1.2E-09 80.9 29.3 257 523-783 50-336 (355)
102 PRK10370 formate-dependent nit 98.6 2.4E-06 5.3E-11 81.3 15.9 118 665-784 52-174 (198)
103 PF12569 NARP1: NMDA receptor- 98.5 7.5E-05 1.6E-09 81.2 28.6 284 392-680 12-333 (517)
104 PRK04841 transcriptional regul 98.5 0.00082 1.8E-08 81.8 41.0 362 390-753 347-764 (903)
105 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.5E-12 60.3 3.5 33 177-209 2-34 (34)
106 cd05804 StaR_like StaR_like; a 98.4 0.0005 1.1E-08 73.4 31.6 189 560-750 123-337 (355)
107 PRK04841 transcriptional regul 98.4 0.00027 5.8E-09 86.0 32.7 356 422-783 348-760 (903)
108 KOG0624 dsRNA-activated protei 98.4 0.0002 4.3E-09 69.9 24.4 283 493-782 46-369 (504)
109 PF12854 PPR_1: PPR repeat 98.4 5.1E-07 1.1E-11 57.4 4.3 33 581-613 2-34 (34)
110 PRK15179 Vi polysaccharide bio 98.4 1.9E-05 4.2E-10 89.1 19.4 138 615-757 84-225 (694)
111 KOG1070 rRNA processing protei 98.4 3.2E-05 7E-10 88.4 20.5 198 584-785 1456-1665(1710)
112 PLN02789 farnesyltranstransfer 98.4 8.6E-05 1.9E-09 76.1 22.1 219 522-781 43-300 (320)
113 KOG1128 Uncharacterized conser 98.3 9.6E-05 2.1E-09 79.4 22.4 217 480-714 393-613 (777)
114 COG5010 TadD Flp pilus assembl 98.3 2.6E-05 5.7E-10 73.7 15.7 123 658-782 72-196 (257)
115 PRK15359 type III secretion sy 98.3 6.6E-06 1.4E-10 74.0 11.4 99 684-784 22-122 (144)
116 PRK10370 formate-dependent nit 98.3 6.7E-05 1.4E-09 71.5 18.5 156 592-760 22-184 (198)
117 TIGR03302 OM_YfiO outer membra 98.3 4E-05 8.7E-10 76.3 17.9 183 549-752 31-235 (235)
118 COG4783 Putative Zn-dependent 98.3 6.9E-05 1.5E-09 77.1 19.1 114 663-778 317-432 (484)
119 KOG4340 Uncharacterized conser 98.3 0.00054 1.2E-08 65.5 23.2 177 397-576 125-335 (459)
120 KOG1128 Uncharacterized conser 98.3 3.8E-05 8.2E-10 82.4 17.4 236 380-697 394-632 (777)
121 COG5010 TadD Flp pilus assembl 98.3 8.4E-05 1.8E-09 70.4 17.7 152 590-745 70-227 (257)
122 PRK15179 Vi polysaccharide bio 98.2 0.00016 3.6E-09 81.8 22.0 144 581-728 81-230 (694)
123 PRK15363 pathogenicity island 98.2 1.5E-05 3.3E-10 70.1 10.0 96 687-782 34-131 (157)
124 PLN02789 farnesyltranstransfer 98.2 0.00021 4.5E-09 73.3 20.0 183 593-780 44-247 (320)
125 KOG1125 TPR repeat-containing 98.1 8.8E-05 1.9E-09 77.7 16.5 248 495-772 295-560 (579)
126 COG4783 Putative Zn-dependent 98.1 0.00037 7.9E-09 71.9 20.3 146 617-784 306-455 (484)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.2E-05 9.1E-10 79.8 13.6 121 656-781 173-295 (395)
128 TIGR02552 LcrH_SycD type III s 98.1 2.9E-05 6.3E-10 69.5 11.1 95 688-782 17-113 (135)
129 KOG0553 TPR repeat-containing 98.1 4.8E-05 1E-09 73.4 12.3 101 662-765 91-194 (304)
130 KOG1070 rRNA processing protei 98.1 0.00088 1.9E-08 77.2 24.1 221 448-669 1455-1688(1710)
131 TIGR00756 PPR pentatricopeptid 98.1 5.9E-06 1.3E-10 53.6 4.3 35 214-248 1-35 (35)
132 KOG3060 Uncharacterized conser 98.1 0.00093 2E-08 62.8 20.0 163 592-759 58-230 (289)
133 TIGR02552 LcrH_SycD type III s 98.1 8.8E-05 1.9E-09 66.4 13.3 115 639-757 5-122 (135)
134 TIGR00756 PPR pentatricopeptid 98.0 8.6E-06 1.9E-10 52.8 4.7 35 113-147 1-35 (35)
135 PRK14720 transcript cleavage f 98.0 0.00063 1.4E-08 77.8 21.7 154 587-772 117-273 (906)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.6E-09 74.7 15.9 126 588-718 171-298 (395)
137 KOG3081 Vesicle coat complex C 98.0 0.0092 2E-07 56.8 24.3 115 593-714 115-233 (299)
138 KOG3060 Uncharacterized conser 97.9 0.0004 8.6E-09 65.2 15.1 180 599-782 25-219 (289)
139 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 50.8 4.3 34 213-246 1-34 (34)
140 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 50.6 4.2 34 112-145 1-34 (34)
141 PF09976 TPR_21: Tetratricopep 97.8 0.00041 8.8E-09 62.7 13.5 124 619-746 14-144 (145)
142 KOG1914 mRNA cleavage and poly 97.8 0.062 1.4E-06 56.5 35.1 161 617-780 366-536 (656)
143 PF12895 Apc3: Anaphase-promot 97.8 2E-05 4.4E-10 63.4 3.6 78 701-779 2-83 (84)
144 PRK10153 DNA-binding transcrip 97.8 0.00098 2.1E-08 73.2 17.2 141 615-757 335-490 (517)
145 PF14432 DYW_deaminase: DYW fa 97.7 2.1E-05 4.6E-10 66.7 3.1 45 790-843 2-46 (116)
146 KOG3081 Vesicle coat complex C 97.7 0.0079 1.7E-07 57.3 20.1 166 540-714 97-268 (299)
147 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0003 6.5E-09 61.2 10.6 99 656-754 6-110 (119)
148 cd00189 TPR Tetratricopeptide 97.7 0.00024 5.2E-09 58.6 9.6 92 691-782 3-96 (100)
149 KOG1914 mRNA cleavage and poly 97.7 0.09 1.9E-06 55.4 38.7 172 532-705 347-527 (656)
150 PF09976 TPR_21: Tetratricopep 97.7 0.0014 3.1E-08 59.2 15.0 113 665-778 24-142 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00042 9.1E-09 60.3 11.3 94 690-783 4-105 (119)
152 PRK14720 transcript cleavage f 97.7 0.024 5.1E-07 65.4 27.6 86 553-653 118-203 (906)
153 PF13414 TPR_11: TPR repeat; P 97.7 7.6E-05 1.7E-09 57.4 5.2 64 719-782 2-66 (69)
154 KOG2053 Mitochondrial inherita 97.7 0.17 3.7E-06 56.7 42.6 90 488-578 439-534 (932)
155 PF01535 PPR: PPR repeat; Int 97.7 5.7E-05 1.2E-09 47.2 3.5 31 214-244 1-31 (31)
156 PF01535 PPR: PPR repeat; Int 97.7 6.4E-05 1.4E-09 46.9 3.7 31 113-143 1-31 (31)
157 COG4235 Cytochrome c biogenesi 97.6 0.00025 5.5E-09 69.1 9.3 107 685-791 152-264 (287)
158 KOG2053 Mitochondrial inherita 97.6 0.19 4.1E-06 56.4 39.6 215 226-445 22-256 (932)
159 PF13432 TPR_16: Tetratricopep 97.6 0.00012 2.6E-09 55.4 5.5 58 726-783 3-60 (65)
160 PLN03088 SGT1, suppressor of 97.6 0.00076 1.6E-08 71.0 12.8 105 660-767 10-117 (356)
161 PRK02603 photosystem I assembl 97.6 0.0018 4E-08 60.5 13.7 130 616-769 34-166 (172)
162 KOG0550 Molecular chaperone (D 97.5 0.0011 2.3E-08 66.8 12.2 150 625-780 177-347 (486)
163 COG3898 Uncharacterized membra 97.5 0.12 2.6E-06 52.1 26.1 266 498-777 97-386 (531)
164 PLN03088 SGT1, suppressor of 97.5 0.00043 9.4E-09 72.9 9.9 90 694-783 8-99 (356)
165 KOG1538 Uncharacterized conser 97.5 0.016 3.4E-07 61.8 20.3 123 592-746 709-843 (1081)
166 PF05843 Suf: Suppressor of fo 97.5 0.0023 4.9E-08 65.0 14.1 138 618-758 2-145 (280)
167 KOG2041 WD40 repeat protein [G 97.5 0.13 2.9E-06 55.6 26.7 303 363-729 748-1066(1189)
168 PF13431 TPR_17: Tetratricopep 97.5 6.8E-05 1.5E-09 47.6 1.7 32 743-774 2-33 (34)
169 PRK02603 photosystem I assembl 97.4 0.00097 2.1E-08 62.4 10.3 82 688-769 35-121 (172)
170 cd00189 TPR Tetratricopeptide 97.4 0.0015 3.2E-08 53.7 10.5 58 620-679 3-61 (100)
171 CHL00033 ycf3 photosystem I as 97.4 0.0011 2.3E-08 61.9 9.8 91 688-778 35-137 (168)
172 PF13432 TPR_16: Tetratricopep 97.4 0.00051 1.1E-08 52.0 6.2 61 694-754 3-65 (65)
173 PF14559 TPR_19: Tetratricopep 97.4 0.00028 6E-09 54.1 4.7 40 721-760 26-65 (68)
174 PRK15363 pathogenicity island 97.3 0.019 4E-07 51.0 16.0 101 609-714 26-129 (157)
175 KOG0553 TPR repeat-containing 97.3 0.0023 5.1E-08 62.1 11.2 100 625-729 89-191 (304)
176 PF04840 Vps16_C: Vps16, C-ter 97.3 0.28 6.1E-06 50.4 30.2 102 593-711 184-285 (319)
177 PF14559 TPR_19: Tetratricopep 97.3 0.00024 5.2E-09 54.4 3.2 53 731-783 2-54 (68)
178 PF14938 SNAP: Soluble NSF att 97.2 0.034 7.5E-07 56.7 19.4 213 500-751 30-268 (282)
179 PF13371 TPR_9: Tetratricopept 97.2 0.00085 1.8E-08 52.2 5.9 56 728-783 3-58 (73)
180 KOG2041 WD40 repeat protein [G 97.2 0.48 1E-05 51.5 28.4 22 523-544 930-951 (1189)
181 CHL00033 ycf3 photosystem I as 97.2 0.0052 1.1E-07 57.2 12.1 110 617-754 35-154 (168)
182 PRK15331 chaperone protein Sic 97.2 0.0031 6.7E-08 56.1 9.7 100 683-782 31-133 (165)
183 PRK10153 DNA-binding transcrip 97.2 0.0071 1.5E-07 66.6 14.4 133 647-783 332-482 (517)
184 PF12895 Apc3: Anaphase-promot 97.2 0.00099 2.1E-08 53.5 5.9 78 630-713 2-83 (84)
185 PF14938 SNAP: Soluble NSF att 97.1 0.014 3E-07 59.6 15.0 142 620-763 78-241 (282)
186 PF13281 DUF4071: Domain of un 97.1 0.13 2.9E-06 53.2 21.7 160 592-754 147-339 (374)
187 PF13414 TPR_11: TPR repeat; P 97.1 0.00096 2.1E-08 51.2 4.9 64 688-751 3-69 (69)
188 KOG2280 Vacuolar assembly/sort 97.1 0.74 1.6E-05 50.9 28.7 85 355-440 443-532 (829)
189 COG4700 Uncharacterized protei 97.0 0.044 9.6E-07 49.2 15.2 132 648-782 85-221 (251)
190 PF12688 TPR_5: Tetratrico pep 97.0 0.0071 1.5E-07 51.7 10.0 84 694-777 7-98 (120)
191 COG3898 Uncharacterized membra 97.0 0.2 4.4E-06 50.6 21.0 145 630-780 133-289 (531)
192 COG4700 Uncharacterized protei 97.0 0.016 3.5E-07 51.9 12.1 108 676-783 77-189 (251)
193 PF13428 TPR_14: Tetratricopep 96.9 0.0012 2.5E-08 45.1 3.8 42 721-762 2-43 (44)
194 PF05843 Suf: Suppressor of fo 96.9 0.0091 2E-07 60.6 11.8 129 653-783 2-136 (280)
195 KOG1130 Predicted G-alpha GTPa 96.9 0.0064 1.4E-07 61.1 9.9 126 654-779 197-340 (639)
196 PRK10803 tol-pal system protei 96.9 0.0057 1.2E-07 60.8 9.4 100 655-754 146-251 (263)
197 PF10037 MRP-S27: Mitochondria 96.9 0.019 4.1E-07 60.6 13.6 120 445-564 61-186 (429)
198 PF12688 TPR_5: Tetratrico pep 96.8 0.026 5.7E-07 48.2 12.1 91 623-713 7-100 (120)
199 PF08579 RPM2: Mitochondrial r 96.8 0.005 1.1E-07 50.4 7.1 79 116-194 29-116 (120)
200 PF13371 TPR_9: Tetratricopept 96.8 0.0037 8E-08 48.5 5.9 67 695-761 2-70 (73)
201 PRK10866 outer membrane biogen 96.8 0.076 1.7E-06 52.4 16.4 172 592-782 38-240 (243)
202 PF10037 MRP-S27: Mitochondria 96.7 0.033 7.1E-07 58.9 14.2 120 546-665 61-186 (429)
203 PF08579 RPM2: Mitochondrial r 96.7 0.016 3.5E-07 47.5 9.1 80 216-295 28-116 (120)
204 PRK10803 tol-pal system protei 96.7 0.027 5.9E-07 56.0 12.8 85 628-714 154-243 (263)
205 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0075 1.6E-07 62.9 8.1 63 720-782 75-140 (453)
206 PF04840 Vps16_C: Vps16, C-ter 96.6 1.1 2.5E-05 46.0 29.9 107 487-609 179-285 (319)
207 KOG2796 Uncharacterized conser 96.5 0.29 6.3E-06 46.8 17.0 139 518-658 179-325 (366)
208 KOG1538 Uncharacterized conser 96.4 0.33 7.1E-06 52.3 19.0 24 490-513 778-801 (1081)
209 PF06239 ECSIT: Evolutionarily 96.4 0.036 7.7E-07 51.7 10.2 96 607-703 35-153 (228)
210 PF06239 ECSIT: Evolutionarily 96.3 0.04 8.8E-07 51.3 10.5 97 505-601 34-153 (228)
211 KOG2796 Uncharacterized conser 96.3 0.33 7.2E-06 46.4 16.2 169 589-757 139-323 (366)
212 KOG0550 Molecular chaperone (D 96.2 0.85 1.9E-05 46.8 19.4 158 549-714 166-347 (486)
213 PRK11906 transcriptional regul 96.1 0.18 4E-06 53.0 15.2 143 632-778 273-431 (458)
214 COG0457 NrfG FOG: TPR repeat [ 96.1 1.5 3.3E-05 42.9 26.8 193 586-782 59-264 (291)
215 PF03704 BTAD: Bacterial trans 96.1 0.075 1.6E-06 48.0 11.3 106 662-781 16-123 (146)
216 PF13525 YfiO: Outer membrane 96.1 0.4 8.6E-06 46.1 16.7 163 593-774 12-198 (203)
217 KOG2280 Vacuolar assembly/sort 96.0 2.6 5.6E-05 46.9 23.3 335 242-608 426-792 (829)
218 PRK10866 outer membrane biogen 96.0 1.4 3.1E-05 43.5 20.3 23 523-545 39-61 (243)
219 PF07079 DUF1347: Protein of u 96.0 2.5 5.5E-05 44.1 34.6 72 708-780 444-521 (549)
220 PF07079 DUF1347: Protein of u 95.8 2.9 6.3E-05 43.7 36.1 204 515-725 297-530 (549)
221 KOG4555 TPR repeat-containing 95.7 0.082 1.8E-06 44.5 8.4 88 697-784 52-145 (175)
222 PF09205 DUF1955: Domain of un 95.6 0.58 1.3E-05 39.7 13.0 140 628-786 13-152 (161)
223 PF13424 TPR_12: Tetratricopep 95.6 0.014 3.1E-07 45.9 3.8 26 722-747 48-73 (78)
224 KOG1920 IkappaB kinase complex 95.6 4.9 0.00011 47.3 24.5 25 488-512 793-819 (1265)
225 PF12921 ATP13: Mitochondrial 95.5 0.12 2.7E-06 44.7 9.3 81 652-732 2-100 (126)
226 KOG1130 Predicted G-alpha GTPa 95.4 0.65 1.4E-05 47.4 15.1 52 424-475 26-80 (639)
227 PF13525 YfiO: Outer membrane 95.4 0.35 7.5E-06 46.5 13.3 140 620-782 8-169 (203)
228 PRK11906 transcriptional regul 95.3 0.2 4.4E-06 52.7 11.9 113 667-779 273-397 (458)
229 PF13512 TPR_18: Tetratricopep 95.3 0.44 9.5E-06 41.7 12.1 18 736-753 115-132 (142)
230 PF13512 TPR_18: Tetratricopep 95.3 0.24 5.1E-06 43.3 10.4 74 695-768 17-98 (142)
231 COG4235 Cytochrome c biogenesi 95.3 0.56 1.2E-05 46.4 14.0 104 651-757 155-264 (287)
232 COG4105 ComL DNA uptake lipopr 95.2 3.4 7.3E-05 40.1 19.3 58 726-783 173-233 (254)
233 KOG0543 FKBP-type peptidyl-pro 95.1 0.2 4.4E-06 51.3 10.8 104 659-781 215-318 (397)
234 KOG0543 FKBP-type peptidyl-pro 95.1 0.24 5.3E-06 50.7 11.3 137 624-782 215-354 (397)
235 COG0457 NrfG FOG: TPR repeat [ 95.0 3.8 8.3E-05 39.9 25.7 193 556-752 64-268 (291)
236 PF13424 TPR_12: Tetratricopep 94.9 0.029 6.2E-07 44.2 3.6 61 721-781 6-73 (78)
237 COG1729 Uncharacterized protei 94.9 0.21 4.6E-06 48.6 10.0 83 629-713 153-240 (262)
238 PF12921 ATP13: Mitochondrial 94.9 0.089 1.9E-06 45.5 6.7 96 587-698 3-98 (126)
239 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.14 3E-06 53.7 9.0 62 688-749 75-141 (453)
240 PF07719 TPR_2: Tetratricopept 94.8 0.059 1.3E-06 34.0 4.1 33 721-753 2-34 (34)
241 smart00299 CLH Clathrin heavy 94.7 1.3 2.8E-05 39.5 14.3 64 655-731 72-136 (140)
242 PF00515 TPR_1: Tetratricopept 94.6 0.051 1.1E-06 34.4 3.5 33 721-753 2-34 (34)
243 COG5107 RNA14 Pre-mRNA 3'-end 94.6 6.9 0.00015 40.9 24.2 143 616-761 396-543 (660)
244 PF03704 BTAD: Bacterial trans 94.6 0.31 6.7E-06 44.0 9.8 70 619-690 64-138 (146)
245 KOG1920 IkappaB kinase complex 94.4 14 0.00031 43.7 25.1 158 498-714 893-1052(1265)
246 PF04184 ST7: ST7 protein; In 94.4 1.2 2.6E-05 47.2 14.4 102 655-756 262-382 (539)
247 KOG1585 Protein required for f 94.2 4 8.6E-05 39.0 15.9 27 517-543 32-58 (308)
248 smart00299 CLH Clathrin heavy 94.2 3.2 6.8E-05 37.0 15.4 126 620-765 10-136 (140)
249 COG4785 NlpI Lipoprotein NlpI, 94.1 1.9 4.2E-05 40.2 13.5 179 598-784 77-267 (297)
250 COG3118 Thioredoxin domain-con 94.1 1.6 3.4E-05 43.1 13.7 117 661-780 143-262 (304)
251 KOG2114 Vacuolar assembly/sort 94.0 14 0.0003 42.1 26.8 47 491-537 711-757 (933)
252 KOG1941 Acetylcholine receptor 94.0 0.65 1.4E-05 46.6 10.9 47 526-572 16-64 (518)
253 COG1729 Uncharacterized protei 93.9 0.43 9.3E-06 46.5 9.6 103 654-757 144-252 (262)
254 PF04053 Coatomer_WDAD: Coatom 93.8 1 2.2E-05 48.7 13.2 106 655-784 298-403 (443)
255 COG5107 RNA14 Pre-mRNA 3'-end 93.6 11 0.00023 39.6 28.0 144 515-662 396-545 (660)
256 COG4105 ComL DNA uptake lipopr 93.6 2.9 6.4E-05 40.5 14.5 26 758-783 171-196 (254)
257 KOG2066 Vacuolar assembly/sort 93.5 16 0.00035 41.2 27.0 74 386-462 394-467 (846)
258 KOG1258 mRNA processing protei 93.3 15 0.00032 40.2 31.2 182 584-769 295-490 (577)
259 PRK15331 chaperone protein Sic 93.2 2.4 5.2E-05 38.2 12.3 87 624-714 44-131 (165)
260 PF02259 FAT: FAT domain; Int 93.1 8.3 0.00018 40.8 19.4 148 616-766 145-304 (352)
261 PF04184 ST7: ST7 protein; In 92.9 1.8 4E-05 45.8 12.8 189 630-832 181-381 (539)
262 PF08631 SPO22: Meiosis protei 92.7 13 0.00028 37.8 23.0 21 727-747 253-273 (278)
263 PF10300 DUF3808: Protein of u 92.6 5.6 0.00012 43.8 17.1 117 630-748 246-375 (468)
264 KOG4234 TPR repeat-containing 92.6 0.39 8.4E-06 43.9 6.6 88 697-784 104-198 (271)
265 KOG3941 Intermediate in Toll s 92.6 0.87 1.9E-05 44.1 9.1 111 200-310 52-186 (406)
266 KOG4555 TPR repeat-containing 92.4 0.85 1.8E-05 38.6 7.8 53 626-680 52-105 (175)
267 KOG3941 Intermediate in Toll s 92.2 1.2 2.6E-05 43.2 9.7 110 504-613 53-186 (406)
268 PF04053 Coatomer_WDAD: Coatom 92.2 2.7 5.9E-05 45.5 13.7 44 497-540 273-319 (443)
269 KOG1586 Protein required for f 92.0 12 0.00025 35.8 17.4 27 730-756 204-231 (288)
270 PF09613 HrpB1_HrpK: Bacterial 91.9 3.8 8.1E-05 36.8 11.8 88 661-751 19-108 (160)
271 PF10300 DUF3808: Protein of u 91.9 5.7 0.00012 43.7 16.0 160 620-782 191-375 (468)
272 PF13181 TPR_8: Tetratricopept 91.1 0.32 6.9E-06 30.6 3.3 31 722-752 3-33 (34)
273 COG3118 Thioredoxin domain-con 90.8 19 0.00041 35.9 16.8 152 625-780 142-299 (304)
274 KOG2114 Vacuolar assembly/sort 90.6 36 0.00079 38.9 28.7 81 223-310 378-458 (933)
275 KOG1941 Acetylcholine receptor 90.6 11 0.00023 38.4 14.5 219 496-714 17-272 (518)
276 PF13170 DUF4003: Protein of u 90.5 8.9 0.00019 39.1 14.7 64 634-698 160-227 (297)
277 PF09613 HrpB1_HrpK: Bacterial 90.5 1.2 2.5E-05 39.9 7.2 54 731-784 21-74 (160)
278 PF00637 Clathrin: Region in C 90.4 0.26 5.7E-06 44.2 3.4 85 254-341 13-97 (143)
279 PRK11619 lytic murein transgly 90.3 39 0.00085 38.8 31.5 125 630-761 254-383 (644)
280 PF00637 Clathrin: Region in C 90.2 0.058 1.3E-06 48.5 -1.1 86 152-240 12-97 (143)
281 TIGR02561 HrpB1_HrpK type III 90.1 1.3 2.7E-05 39.0 6.9 53 732-784 22-74 (153)
282 KOG1586 Protein required for f 89.7 11 0.00025 35.8 13.2 94 662-755 83-189 (288)
283 PRK12798 chemotaxis protein; R 89.7 30 0.00064 36.4 22.1 163 599-766 125-302 (421)
284 PF14853 Fis1_TPR_C: Fis1 C-te 89.6 1.1 2.4E-05 31.7 5.1 36 725-760 6-41 (53)
285 KOG2610 Uncharacterized conser 89.6 7.8 0.00017 38.9 12.6 174 597-775 114-307 (491)
286 PRK09687 putative lyase; Provi 89.2 27 0.00059 35.4 26.1 49 513-563 65-117 (280)
287 PF13428 TPR_14: Tetratricopep 89.1 1.2 2.6E-05 30.1 5.1 33 619-653 3-35 (44)
288 PF13176 TPR_7: Tetratricopept 88.8 0.57 1.2E-05 30.1 3.1 23 723-745 2-24 (36)
289 KOG2610 Uncharacterized conser 88.6 3.6 7.9E-05 41.1 9.6 161 628-791 114-284 (491)
290 COG4649 Uncharacterized protei 88.5 19 0.00041 32.7 15.4 119 627-748 68-195 (221)
291 COG2976 Uncharacterized protei 88.5 15 0.00033 34.0 12.9 114 635-753 70-192 (207)
292 PF13281 DUF4071: Domain of un 88.0 38 0.00082 35.6 23.3 174 522-719 147-337 (374)
293 KOG4234 TPR repeat-containing 88.0 5.8 0.00013 36.7 9.8 67 695-761 141-209 (271)
294 KOG4648 Uncharacterized conser 87.9 1.6 3.4E-05 43.6 6.7 27 731-757 176-202 (536)
295 PF13176 TPR_7: Tetratricopept 87.4 1.3 2.8E-05 28.3 4.1 26 619-644 1-26 (36)
296 PF00515 TPR_1: Tetratricopept 87.4 1.4 3E-05 27.6 4.3 32 618-651 2-33 (34)
297 PF02259 FAT: FAT domain; Int 87.1 31 0.00066 36.4 17.1 64 719-782 145-212 (352)
298 COG3629 DnrI DNA-binding trans 87.0 4.6 0.0001 40.2 9.5 75 587-661 154-236 (280)
299 KOG1585 Protein required for f 86.8 22 0.00048 34.3 13.1 47 732-778 122-174 (308)
300 COG3947 Response regulator con 86.4 31 0.00066 34.3 14.2 57 726-782 285-341 (361)
301 COG4785 NlpI Lipoprotein NlpI, 86.2 4.3 9.3E-05 38.0 8.1 90 662-754 75-167 (297)
302 KOG1464 COP9 signalosome, subu 86.1 35 0.00076 33.2 15.7 238 497-742 39-325 (440)
303 PF10602 RPN7: 26S proteasome 86.0 9.6 0.00021 35.5 10.7 62 619-680 38-101 (177)
304 KOG0403 Neoplastic transformat 85.9 50 0.0011 34.8 17.3 72 388-463 513-587 (645)
305 COG4649 Uncharacterized protei 85.8 18 0.00039 32.8 11.4 117 597-714 69-193 (221)
306 PF04097 Nic96: Nup93/Nic96; 85.6 41 0.0009 38.6 17.7 21 698-718 515-535 (613)
307 KOG0890 Protein kinase of the 85.4 1.3E+02 0.0029 39.2 27.7 275 490-783 1425-1731(2382)
308 PRK09687 putative lyase; Provi 84.8 48 0.001 33.6 26.8 74 584-663 204-278 (280)
309 PF09205 DUF1955: Domain of un 84.7 25 0.00054 30.3 12.8 60 620-680 89-148 (161)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 84.6 8.4 0.00018 31.0 7.9 55 706-760 28-82 (103)
311 COG3629 DnrI DNA-binding trans 84.5 3.9 8.4E-05 40.8 7.6 60 723-782 156-215 (280)
312 TIGR02561 HrpB1_HrpK type III 84.0 15 0.00032 32.5 10.0 47 665-714 23-70 (153)
313 KOG4279 Serine/threonine prote 83.8 17 0.00036 40.7 12.4 181 519-753 204-399 (1226)
314 PF07719 TPR_2: Tetratricopept 83.6 2.5 5.5E-05 26.3 4.1 31 619-651 3-33 (34)
315 PF06552 TOM20_plant: Plant sp 83.3 7.1 0.00015 35.7 8.1 106 655-788 31-141 (186)
316 KOG4648 Uncharacterized conser 83.3 1.9 4.1E-05 43.1 4.8 45 661-708 106-151 (536)
317 PF13431 TPR_17: Tetratricopep 83.3 1.1 2.3E-05 28.3 2.2 22 687-708 12-33 (34)
318 PRK15180 Vi polysaccharide bio 83.2 8.7 0.00019 40.4 9.6 120 630-753 302-424 (831)
319 PRK10941 hypothetical protein; 82.4 12 0.00026 37.5 10.2 62 722-783 183-244 (269)
320 PF13170 DUF4003: Protein of u 82.3 55 0.0012 33.4 15.1 54 633-686 78-137 (297)
321 KOG0276 Vesicle coat complex C 82.2 13 0.00027 40.6 10.6 146 599-778 599-745 (794)
322 PF07721 TPR_4: Tetratricopept 82.2 1.4 2.9E-05 25.8 2.2 24 755-778 2-25 (26)
323 PF07035 Mic1: Colon cancer-as 82.1 41 0.00088 30.8 14.3 56 287-342 93-148 (167)
324 TIGR02508 type_III_yscG type I 81.9 14 0.0003 29.9 8.1 87 162-252 20-106 (115)
325 smart00028 TPR Tetratricopepti 81.9 2.6 5.7E-05 25.2 3.8 31 722-752 3-33 (34)
326 PF10602 RPN7: 26S proteasome 81.2 17 0.00038 33.8 10.3 94 586-679 36-140 (177)
327 KOG2066 Vacuolar assembly/sort 80.6 1.1E+02 0.0024 34.9 23.7 105 220-361 363-467 (846)
328 PF11207 DUF2989: Protein of u 79.9 7.8 0.00017 36.3 7.3 69 705-773 123-197 (203)
329 PF13174 TPR_6: Tetratricopept 79.7 2.9 6.3E-05 25.7 3.3 24 729-752 9-32 (33)
330 KOG4570 Uncharacterized conser 79.6 17 0.00037 36.3 9.7 96 581-680 59-163 (418)
331 COG4455 ImpE Protein of avirul 79.4 46 0.00099 31.6 11.9 122 620-754 4-139 (273)
332 PHA02875 ankyrin repeat protei 79.0 80 0.0017 34.2 16.5 162 136-310 19-192 (413)
333 PF07035 Mic1: Colon cancer-as 78.9 52 0.0011 30.1 15.6 37 371-407 16-52 (167)
334 KOG1258 mRNA processing protei 78.6 1.1E+02 0.0025 33.8 28.7 179 485-665 297-488 (577)
335 PF02284 COX5A: Cytochrome c o 78.5 10 0.00022 30.8 6.5 55 706-760 31-85 (108)
336 COG2909 MalT ATP-dependent tra 77.8 1.5E+02 0.0032 34.7 19.8 183 597-784 426-648 (894)
337 PF04910 Tcf25: Transcriptiona 77.5 1E+02 0.0022 32.6 18.0 53 659-714 110-165 (360)
338 cd00923 Cyt_c_Oxidase_Va Cytoc 77.3 17 0.00036 29.4 7.3 62 632-695 22-83 (103)
339 PF13374 TPR_10: Tetratricopep 77.1 5.6 0.00012 26.1 4.4 27 619-645 4-30 (42)
340 PF02284 COX5A: Cytochrome c o 77.0 13 0.00029 30.2 6.8 60 635-696 28-87 (108)
341 PF13181 TPR_8: Tetratricopept 76.9 3.9 8.4E-05 25.5 3.3 27 619-645 3-29 (34)
342 PF10345 Cohesin_load: Cohesin 76.8 1.5E+02 0.0032 34.2 34.8 80 397-476 152-251 (608)
343 KOG1308 Hsp70-interacting prot 76.7 1.7 3.6E-05 43.7 2.2 58 728-785 156-213 (377)
344 KOG4570 Uncharacterized conser 76.2 4.9 0.00011 39.9 5.1 98 76-177 59-165 (418)
345 KOG1550 Extracellular protein 76.2 71 0.0015 36.2 15.2 82 703-786 343-429 (552)
346 TIGR02508 type_III_yscG type I 75.7 42 0.00091 27.3 9.2 56 597-655 50-105 (115)
347 PF13174 TPR_6: Tetratricopept 75.3 2.6 5.7E-05 25.9 2.2 28 756-783 2-29 (33)
348 COG4455 ImpE Protein of avirul 75.1 59 0.0013 30.9 11.4 118 654-784 3-135 (273)
349 PRK15180 Vi polysaccharide bio 75.1 23 0.0005 37.4 9.8 140 664-807 301-442 (831)
350 PF04097 Nic96: Nup93/Nic96; 75.0 1.6E+02 0.0036 33.8 18.7 90 593-686 421-535 (613)
351 KOG1498 26S proteasome regulat 74.0 1.2E+02 0.0026 31.7 17.1 210 582-816 48-274 (439)
352 COG1747 Uncharacterized N-term 73.9 1.4E+02 0.003 32.4 19.5 160 588-754 68-239 (711)
353 KOG4507 Uncharacterized conser 73.7 9.4 0.0002 41.3 6.8 99 662-763 617-719 (886)
354 PF06552 TOM20_plant: Plant sp 72.9 15 0.00032 33.7 6.9 45 736-780 51-99 (186)
355 PF07721 TPR_4: Tetratricopept 71.5 7.7 0.00017 22.5 3.3 21 692-712 5-25 (26)
356 KOG0890 Protein kinase of the 70.9 3.5E+02 0.0076 35.8 32.7 108 653-764 1671-1799(2382)
357 KOG3807 Predicted membrane pro 69.9 35 0.00075 34.3 9.2 118 623-760 281-402 (556)
358 KOG2471 TPR repeat-containing 68.9 1.7E+02 0.0038 31.5 14.4 204 623-837 106-329 (696)
359 KOG3364 Membrane protein invol 68.5 34 0.00074 29.7 7.7 33 724-756 75-107 (149)
360 KOG3364 Membrane protein invol 67.8 41 0.0009 29.2 8.0 91 717-830 29-124 (149)
361 PF13374 TPR_10: Tetratricopep 67.7 9.3 0.0002 25.0 3.7 24 757-780 5-28 (42)
362 PHA02875 ankyrin repeat protei 66.6 1.4E+02 0.003 32.4 14.6 139 158-308 10-157 (413)
363 PF08631 SPO22: Meiosis protei 65.4 1.6E+02 0.0035 29.8 24.3 23 620-643 250-272 (278)
364 KOG0376 Serine-threonine phosp 64.6 5.3 0.00011 42.3 2.8 99 659-760 11-112 (476)
365 PF13934 ELYS: Nuclear pore co 63.5 98 0.0021 30.2 11.2 106 620-734 79-186 (226)
366 PF14561 TPR_20: Tetratricopep 63.5 9.8 0.00021 30.7 3.6 62 719-780 21-85 (90)
367 COG4976 Predicted methyltransf 63.3 11 0.00023 35.9 4.2 58 697-754 4-63 (287)
368 PRK13800 putative oxidoreducta 63.0 3.5E+02 0.0077 32.9 25.6 49 686-734 787-835 (897)
369 PF11207 DUF2989: Protein of u 63.0 50 0.0011 31.1 8.4 43 665-707 153-197 (203)
370 PF15469 Sec5: Exocyst complex 62.6 1.3E+02 0.0029 28.0 11.7 119 620-760 60-179 (182)
371 KOG0545 Aryl-hydrocarbon recep 62.2 27 0.00057 33.7 6.5 52 730-781 240-291 (329)
372 smart00386 HAT HAT (Half-A-TPR 62.1 11 0.00024 22.8 3.1 29 734-762 1-29 (33)
373 PF07163 Pex26: Pex26 protein; 62.1 92 0.002 30.9 10.2 88 624-714 90-184 (309)
374 KOG2063 Vacuolar assembly/sort 61.1 3.5E+02 0.0076 32.3 16.9 127 115-260 507-638 (877)
375 PF09477 Type_III_YscG: Bacter 60.7 68 0.0015 26.6 7.6 87 161-251 20-106 (116)
376 PF10579 Rapsyn_N: Rapsyn N-te 60.3 17 0.00036 28.1 4.0 18 691-708 46-63 (80)
377 COG3947 Response regulator con 60.1 1.9E+02 0.0042 29.0 12.5 66 620-687 282-352 (361)
378 KOG4642 Chaperone-dependent E3 59.7 22 0.00048 34.1 5.6 112 661-775 19-136 (284)
379 PF09986 DUF2225: Uncharacteri 59.7 39 0.00085 32.5 7.6 63 721-783 119-194 (214)
380 TIGR03504 FimV_Cterm FimV C-te 59.5 21 0.00046 24.1 4.0 24 623-646 5-28 (44)
381 PF13929 mRNA_stabil: mRNA sta 58.5 2.1E+02 0.0045 28.8 13.4 55 481-535 198-257 (292)
382 PF14561 TPR_20: Tetratricopep 58.0 76 0.0017 25.5 7.8 28 687-714 21-48 (90)
383 COG1747 Uncharacterized N-term 57.8 2.9E+02 0.0062 30.2 21.1 94 515-613 65-158 (711)
384 KOG0276 Vesicle coat complex C 57.7 1.3E+02 0.0027 33.4 11.3 101 596-714 647-747 (794)
385 PF06957 COPI_C: Coatomer (COP 57.4 38 0.00083 36.1 7.6 43 711-753 289-333 (422)
386 smart00028 TPR Tetratricopepti 57.4 21 0.00045 20.8 3.8 27 619-645 3-29 (34)
387 PF10345 Cohesin_load: Cohesin 56.8 3.6E+02 0.0078 31.1 35.0 80 196-275 153-252 (608)
388 PF10579 Rapsyn_N: Rapsyn N-te 56.8 38 0.00083 26.2 5.4 47 629-675 18-66 (80)
389 PF07720 TPR_3: Tetratricopept 56.7 28 0.00062 22.3 4.1 31 723-753 4-36 (36)
390 PRK13342 recombination factor 56.6 2.9E+02 0.0063 29.9 15.1 48 518-565 229-279 (413)
391 PRK13342 recombination factor 56.6 2.9E+02 0.0063 29.9 14.7 47 620-666 230-279 (413)
392 PF13762 MNE1: Mitochondrial s 56.0 1.5E+02 0.0032 26.4 10.0 48 617-664 79-127 (145)
393 KOG3824 Huntingtin interacting 56.0 19 0.00041 35.8 4.6 60 700-759 128-189 (472)
394 PF14853 Fis1_TPR_C: Fis1 C-te 55.9 40 0.00086 23.9 5.1 36 623-660 7-42 (53)
395 PRK10941 hypothetical protein; 55.6 61 0.0013 32.5 8.4 68 692-759 185-254 (269)
396 KOG0403 Neoplastic transformat 55.5 2.9E+02 0.0062 29.5 28.1 58 590-647 513-573 (645)
397 PF09670 Cas_Cas02710: CRISPR- 55.4 1.4E+02 0.0031 31.8 11.7 53 627-680 141-197 (379)
398 cd00280 TRFH Telomeric Repeat 55.1 1.8E+02 0.0039 27.0 12.2 40 725-765 116-155 (200)
399 TIGR03504 FimV_Cterm FimV C-te 54.9 20 0.00043 24.3 3.3 27 758-784 3-29 (44)
400 KOG0686 COP9 signalosome, subu 54.2 2.9E+02 0.0063 29.2 14.5 60 586-645 150-215 (466)
401 KOG0551 Hsp90 co-chaperone CNS 53.6 51 0.0011 33.5 7.2 87 689-775 82-174 (390)
402 KOG1550 Extracellular protein 53.4 3.9E+02 0.0084 30.4 21.6 77 703-782 454-537 (552)
403 PF13762 MNE1: Mitochondrial s 51.4 93 0.002 27.7 7.8 78 82-159 40-127 (145)
404 KOG4077 Cytochrome c oxidase, 51.4 1.2E+02 0.0026 26.1 7.8 53 705-757 69-121 (149)
405 COG2976 Uncharacterized protei 51.3 2.2E+02 0.0047 26.9 14.3 85 594-680 97-187 (207)
406 KOG4642 Chaperone-dependent E3 51.0 1.6E+02 0.0034 28.7 9.5 81 596-678 20-104 (284)
407 KOG0292 Vesicle coat complex C 50.6 2.4E+02 0.0051 33.0 12.3 132 594-749 651-782 (1202)
408 KOG3824 Huntingtin interacting 50.0 32 0.00069 34.3 5.1 49 730-778 126-174 (472)
409 PF11846 DUF3366: Domain of un 49.6 46 0.001 31.5 6.4 36 716-751 140-175 (193)
410 PF09477 Type_III_YscG: Bacter 49.3 1.5E+02 0.0033 24.6 8.9 15 664-678 81-95 (116)
411 PHA03100 ankyrin repeat protei 49.2 4.1E+02 0.0088 29.4 16.6 13 194-206 117-129 (480)
412 PF04910 Tcf25: Transcriptiona 48.9 1.1E+02 0.0024 32.3 9.5 48 630-678 7-66 (360)
413 KOG1464 COP9 signalosome, subu 48.6 2.8E+02 0.0061 27.4 17.6 186 529-714 40-258 (440)
414 KOG0292 Vesicle coat complex C 48.4 24 0.00053 40.4 4.6 91 658-772 626-716 (1202)
415 PF11846 DUF3366: Domain of un 47.5 56 0.0012 30.9 6.6 33 682-714 138-170 (193)
416 PF14863 Alkyl_sulf_dimr: Alky 46.7 63 0.0014 28.7 6.1 67 704-773 57-123 (141)
417 PHA02537 M terminase endonucle 46.0 2.1E+02 0.0045 27.9 9.9 22 732-753 190-211 (230)
418 KOG0991 Replication factor C, 46.0 2.9E+02 0.0063 26.8 11.6 138 492-653 137-274 (333)
419 PF12862 Apc5: Anaphase-promot 45.1 50 0.0011 26.8 5.0 51 731-781 9-68 (94)
420 KOG4279 Serine/threonine prote 44.1 1.3E+02 0.0028 34.2 9.0 99 618-719 202-319 (1226)
421 KOG4077 Cytochrome c oxidase, 43.6 1.5E+02 0.0033 25.4 7.4 59 635-695 67-125 (149)
422 PF14689 SPOB_a: Sensor_kinase 43.5 52 0.0011 24.2 4.3 31 650-680 21-51 (62)
423 PF11768 DUF3312: Protein of u 43.4 2.8E+02 0.006 30.8 11.3 23 591-613 413-435 (545)
424 PF04034 DUF367: Domain of unk 43.2 1.7E+02 0.0036 25.3 7.7 61 687-747 65-126 (127)
425 TIGR02710 CRISPR-associated pr 42.7 4.3E+02 0.0092 28.1 12.3 51 626-676 139-195 (380)
426 PF10366 Vps39_1: Vacuolar sor 42.3 1.5E+02 0.0032 24.9 7.4 27 114-140 41-67 (108)
427 PF10366 Vps39_1: Vacuolar sor 41.9 1.8E+02 0.004 24.3 7.9 27 417-443 41-67 (108)
428 PF06135 DUF965: Bacterial pro 41.4 40 0.00087 25.9 3.4 35 800-834 4-38 (79)
429 COG2909 MalT ATP-dependent tra 41.1 6.8E+02 0.015 29.7 23.2 50 564-613 471-524 (894)
430 KOG0508 Ankyrin repeat protein 40.5 2.3E+02 0.005 30.5 9.7 35 715-749 331-366 (615)
431 PF00244 14-3-3: 14-3-3 protei 40.3 3.7E+02 0.008 26.4 11.5 57 522-578 7-64 (236)
432 PF04090 RNA_pol_I_TF: RNA pol 40.1 3.3E+02 0.0072 25.8 10.1 29 618-646 42-70 (199)
433 PRK05473 hypothetical protein; 39.5 40 0.00086 26.4 3.2 36 798-833 5-40 (86)
434 PF12968 DUF3856: Domain of Un 39.1 2.5E+02 0.0054 24.0 7.8 19 761-779 107-125 (144)
435 PF07163 Pex26: Pex26 protein; 39.0 2.7E+02 0.0058 27.9 9.4 23 741-763 265-287 (309)
436 PF08424 NRDE-2: NRDE-2, neces 38.2 4.8E+02 0.01 27.1 13.1 60 719-778 64-126 (321)
437 cd08819 CARD_MDA5_2 Caspase ac 37.7 2.1E+02 0.0046 22.8 7.0 38 598-636 48-85 (88)
438 cd08819 CARD_MDA5_2 Caspase ac 36.4 1.7E+02 0.0037 23.4 6.2 39 295-334 48-86 (88)
439 KOG0991 Replication factor C, 36.1 4.2E+02 0.0091 25.8 11.0 152 85-261 134-285 (333)
440 PF11848 DUF3368: Domain of un 35.9 1.2E+02 0.0026 20.9 4.9 34 223-256 12-45 (48)
441 PF12862 Apc5: Anaphase-promot 35.5 1.1E+02 0.0023 24.8 5.6 24 726-749 47-70 (94)
442 KOG4521 Nuclear pore complex, 34.7 9.5E+02 0.021 29.5 17.2 116 655-775 986-1123(1480)
443 PF14162 YozD: YozD-like prote 34.7 53 0.0012 22.6 2.8 23 812-834 9-31 (57)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 34.2 1.8E+02 0.0039 25.2 7.0 42 738-779 81-124 (126)
445 PRK11619 lytic murein transgly 34.1 8E+02 0.017 28.5 40.0 80 695-774 414-496 (644)
446 PF15015 NYD-SP12_N: Spermatog 33.5 75 0.0016 33.4 5.0 22 693-714 233-254 (569)
447 PF02847 MA3: MA3 domain; Int 33.0 1.9E+02 0.004 24.3 6.9 21 522-542 8-28 (113)
448 KOG0376 Serine-threonine phosp 33.0 1.2E+02 0.0025 32.7 6.5 101 627-732 14-117 (476)
449 COG2042 Uncharacterized conser 32.8 2.8E+02 0.006 25.2 7.7 85 662-746 74-174 (179)
450 PRK10564 maltose regulon perip 32.7 81 0.0018 31.8 5.0 40 620-659 260-299 (303)
451 PF11663 Toxin_YhaV: Toxin wit 31.8 56 0.0012 28.4 3.2 34 526-561 105-138 (140)
452 PF11663 Toxin_YhaV: Toxin wit 31.3 62 0.0014 28.1 3.5 33 123-157 106-138 (140)
453 KOG2422 Uncharacterized conser 31.2 3E+02 0.0065 30.6 9.1 102 662-765 248-388 (665)
454 PF14689 SPOB_a: Sensor_kinase 30.5 85 0.0018 23.1 3.7 25 621-645 27-51 (62)
455 KOG1811 Predicted Zn2+-binding 30.3 4.1E+02 0.0089 29.5 9.9 99 688-789 556-655 (1141)
456 PRK02287 hypothetical protein; 30.3 3E+02 0.0066 25.3 7.8 61 688-748 107-168 (171)
457 cd02679 MIT_spastin MIT: domai 30.1 32 0.0007 26.8 1.5 47 733-782 21-67 (79)
458 COG2912 Uncharacterized conser 29.7 1.7E+02 0.0036 29.2 6.6 58 725-782 186-243 (269)
459 PRK10564 maltose regulon perip 29.4 86 0.0019 31.6 4.6 42 211-252 254-296 (303)
460 KOG2300 Uncharacterized conser 29.4 7.8E+02 0.017 26.9 21.1 124 522-645 329-473 (629)
461 COG2178 Predicted RNA-binding 29.4 4.9E+02 0.011 24.5 9.4 52 595-646 38-98 (204)
462 PF04190 DUF410: Protein of un 29.4 5.9E+02 0.013 25.5 19.0 83 584-681 88-170 (260)
463 PF11848 DUF3368: Domain of un 29.0 2E+02 0.0043 19.9 5.2 33 628-660 13-45 (48)
464 KOG2659 LisH motif-containing 28.7 4.1E+02 0.0089 25.7 8.7 92 619-714 28-129 (228)
465 COG5191 Uncharacterized conser 28.5 90 0.0019 31.4 4.5 73 687-759 106-181 (435)
466 KOG4507 Uncharacterized conser 28.4 2.5E+02 0.0054 31.2 7.9 131 648-781 567-703 (886)
467 COG5159 RPN6 26S proteasome re 27.9 6.4E+02 0.014 25.4 14.4 156 523-678 10-191 (421)
468 KOG2659 LisH motif-containing 27.3 5.8E+02 0.013 24.7 10.7 101 639-745 15-128 (228)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 27.0 4.2E+02 0.009 23.0 8.6 42 635-676 81-123 (126)
470 KOG1498 26S proteasome regulat 26.6 7.9E+02 0.017 26.0 15.7 31 590-623 135-165 (439)
471 PF12796 Ank_2: Ankyrin repeat 26.1 3.2E+02 0.0069 21.3 7.5 15 335-349 40-54 (89)
472 COG4472 Uncharacterized protei 25.7 85 0.0018 24.0 2.9 36 797-832 4-39 (88)
473 PRK14700 recombination factor 25.6 6.6E+02 0.014 25.7 10.0 46 521-566 128-176 (300)
474 KOG1524 WD40 repeat-containing 24.9 3.4E+02 0.0074 29.7 8.1 58 689-749 574-631 (737)
475 cd00280 TRFH Telomeric Repeat 24.7 3.2E+02 0.007 25.4 6.9 31 695-725 118-148 (200)
476 PF07575 Nucleopor_Nup85: Nup8 24.6 2.9E+02 0.0062 31.6 8.5 244 199-459 284-539 (566)
477 PF02184 HAT: HAT (Half-A-TPR) 24.3 1.7E+02 0.0036 18.3 3.4 24 632-657 2-25 (32)
478 COG4976 Predicted methyltransf 23.6 1.3E+02 0.0029 28.9 4.4 54 731-784 6-59 (287)
479 COG0790 FOG: TPR repeat, SEL1 23.5 7.7E+02 0.017 24.9 18.3 183 600-787 55-270 (292)
480 KOG0687 26S proteasome regulat 23.0 8.5E+02 0.018 25.1 10.5 133 600-752 36-176 (393)
481 PF13934 ELYS: Nuclear pore co 22.8 7.2E+02 0.016 24.2 12.3 114 599-721 91-205 (226)
482 PF11838 ERAP1_C: ERAP1-like C 22.7 8.4E+02 0.018 25.0 17.8 179 601-779 55-262 (324)
483 PF00244 14-3-3: 14-3-3 protei 22.7 7.4E+02 0.016 24.3 12.9 188 623-825 7-226 (236)
484 TIGR02414 pepN_proteo aminopep 22.6 1.4E+03 0.031 27.6 14.7 56 720-775 773-835 (863)
485 PRK11639 zinc uptake transcrip 22.5 2.7E+02 0.0058 25.7 6.4 43 626-668 34-76 (169)
486 smart00544 MA3 Domain in DAP-5 22.2 4.7E+02 0.01 21.8 9.2 21 522-542 8-28 (113)
487 PF11817 Foie-gras_1: Foie gra 21.8 2.4E+02 0.0053 27.9 6.4 16 423-438 18-33 (247)
488 COG4941 Predicted RNA polymera 21.3 9.3E+02 0.02 25.0 12.1 121 633-757 272-402 (415)
489 PLN03192 Voltage-dependent pot 21.3 1.1E+03 0.024 28.4 13.0 142 259-413 533-681 (823)
490 cd08326 CARD_CASP9 Caspase act 20.7 3.9E+02 0.0084 21.2 6.0 38 193-230 41-78 (84)
491 PLN03192 Voltage-dependent pot 20.7 9.6E+02 0.021 28.9 12.3 146 292-451 531-684 (823)
492 COG2178 Predicted RNA-binding 20.6 7.3E+02 0.016 23.5 8.7 27 654-680 31-57 (204)
493 PRK14015 pepN aminopeptidase N 20.5 1.6E+03 0.034 27.3 14.7 56 720-775 783-845 (875)
494 COG5071 RPN5 26S proteasome re 20.5 9E+02 0.02 24.5 11.3 69 660-728 179-256 (439)
495 PRK13800 putative oxidoreducta 20.2 1.6E+03 0.035 27.4 28.6 254 405-680 625-880 (897)
496 KOG2034 Vacuolar sorting prote 20.1 1.5E+03 0.033 27.0 23.8 147 386-542 391-556 (911)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-119 Score=1067.22 Aligned_cols=730 Identities=35% Similarity=0.651 Sum_probs=720.4
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 003150 109 LATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSL 188 (844)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 188 (844)
.++..++|.++++|++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+.+..|.++++.+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHH
Q 003150 189 VKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGT 268 (844)
Q Consensus 189 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 268 (844)
|.+|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003150 269 QVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPD 348 (844)
Q Consensus 269 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 348 (844)
++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 003150 349 EITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLN 428 (844)
Q Consensus 349 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 428 (844)
..||+.++.+|++.|+++.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||++|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHH
Q 003150 429 GISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIF 508 (844)
Q Consensus 429 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (844)
|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhH
Q 003150 509 KRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIA 588 (844)
Q Consensus 509 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 588 (844)
++|.++|+++||++|.+|++.|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.++..+
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 999999999999999999999999999999999985 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCH
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQV 668 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 668 (844)
+|+|+++|+|+|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 669 EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
++|.++|+.|.+++++.|+..||++|+++|+|+|++++|.+++++|+++||..+|++|+++|+.+|+.+.|+.+++++++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999999999778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCeeEEEECCEEEEEEeCCCCCcChHHH---HHHHHHHHH
Q 003150 749 LDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGYSWIELNNITHLFVAADESHSESAQM---LNILLPELE 825 (844)
Q Consensus 749 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~---~~~l~~~~~ 825 (844)
++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|.||+||||+++++|.|++||++||+.++| |+.|..+|+
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 765 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hcCcccCCCCccccc
Q 003150 826 KEGYIPQPCLSMHLQ 840 (844)
Q Consensus 826 ~~g~~~~~~~~~~~~ 840 (844)
+.||+||++.++++.
T Consensus 766 ~~g~~~~~~~~~~~~ 780 (857)
T PLN03077 766 ASGLAGSESSSMDEI 780 (857)
T ss_pred hCCcCCCcchhcccc
Confidence 999999999988653
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-93 Score=840.04 Aligned_cols=640 Identities=31% Similarity=0.535 Sum_probs=622.3
Q ss_pred chhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCCCCCCcccHHHHHHHHHh
Q 003150 45 LASHLGSILEACADHSVLQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRLDLATSLPWNRMIRVFAK 124 (844)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~ 124 (844)
...++..++++|.+.+.+..+.++|..+.+.|..+++.++|.|+.+|++.|+++.|.++|++|++||+++||.||++|++
T Consensus 85 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~ 164 (857)
T PLN03077 85 DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164 (857)
T ss_pred ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHh
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHH
Q 003150 125 MGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYV 204 (844)
Q Consensus 125 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 204 (844)
.|++++|+.+|++|...|+.||.+||+.++++|+..+++..+.++|..+.+.|+.||+.++|+||.+|+++|++++|.++
T Consensus 165 ~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChh
Q 003150 205 FDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQ 284 (844)
Q Consensus 205 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 284 (844)
|++|+++|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|+++|..+.+.|+.||..
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhcccc
Q 003150 285 VANSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVAS 364 (844)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 364 (844)
+||+||.+|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 003150 365 IKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQE 444 (844)
Q Consensus 365 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (844)
++.|.++|+.+.+.|+.|+..++++||++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++|+.+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHH
Q 003150 445 KIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMIT 524 (844)
Q Consensus 445 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 524 (844)
+++||..||+++|.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~ 562 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLT 562 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHH
Q 003150 525 RYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMI-KDSCRSDNIAESVLIDLYAKCGNLD 603 (844)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~ 603 (844)
+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 6799999999999999999999999
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhh
Q 003150 604 FARTVFDMMQ-RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEE 681 (844)
Q Consensus 604 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 681 (844)
+|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.. .|..+.+.|...|++++|.++.+.|++.
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999996 69999999999999999999999999999988 678765 5666667999999999999999999984
Q ss_pred cCCCCCch
Q 003150 682 YGIPARME 689 (844)
Q Consensus 682 ~~~~p~~~ 689 (844)
|+++++.
T Consensus 721 -g~~k~~g 727 (857)
T PLN03077 721 -GLTVDPG 727 (857)
T ss_pred -CCCCCCC
Confidence 8888754
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-88 Score=782.09 Aligned_cols=533 Identities=32% Similarity=0.556 Sum_probs=524.9
Q ss_pred CCCccchHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHH
Q 003150 311 QINLVTWNGMIAGHVQNGFMNEALDLFRKMILSG-VKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSA 389 (844)
Q Consensus 311 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 389 (844)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHH
Q 003150 390 LIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLG 469 (844)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 469 (844)
|+++|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 003150 470 KELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKH 549 (844)
Q Consensus 470 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 549 (844)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 003150 550 DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGC 629 (844)
Q Consensus 550 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 629 (844)
|..||++++.+|++.|.++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|..+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALE 709 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 709 (844)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++++.|+..+|++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCC
Q 003150 710 TINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIP 789 (844)
Q Consensus 710 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~ 789 (844)
++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|..|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEECCEEEEEEeCCCCCcChHHH---HHHHHHHHHhcCcccCCCCccccccCC
Q 003150 790 GYSWIELNNITHLFVAADESHSESAQM---LNILLPELEKEGYIPQPCLSMHLQALG 843 (844)
Q Consensus 790 ~~s~i~~~~~~~~f~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~~~~~~~ 843 (844)
|+|||++++++|.|++||.+||+.++| +++|..+|++.||+||+++++|+++++
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 999999999999999999999999999 999999999999999999999999864
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-69 Score=620.72 Aligned_cols=528 Identities=17% Similarity=0.233 Sum_probs=469.5
Q ss_pred CCCChhhHhHHHHHHHhcCChhhHhhhccCCCCCCcccH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH
Q 003150 77 ISDNAALGAKILGMYVLCGGFIDAGNMFPRLDLATSLPW-----NRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFP 151 (844)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 151 (844)
..++...|..++..|++.|++++|.++|++|+.++.+.| +.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 346678899999999999999999999999987776654 5677789999999999999999975 9999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCC----CCCcchHHHHHHHHHhCC
Q 003150 152 SVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMS----QRDCVLWNVMLNGYVTCG 227 (844)
Q Consensus 152 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 227 (844)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 489999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHH--hcCCCChhhhhHHHHHHhcCCChhHHHHH
Q 003150 228 ESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVS--VGLEFDPQVANSLLSMYSKSGRLYDALKL 305 (844)
Q Consensus 228 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (844)
++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|+++|.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67999999999999999999999999999
Q ss_pred hccCCC----CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCC
Q 003150 306 FELMPQ----INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVP 381 (844)
Q Consensus 306 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 381 (844)
|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999975 6779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhCCCHHHHHHHHHhCC----CCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 003150 382 LDAFLKSALIDIYFKCRDVKMACKVFKENT----AADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSIL 457 (844)
Q Consensus 382 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 457 (844)
||..+|++||++|+++|++++|.++|++|. .||+++||.||.+|++.|++++|+++|++|...|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999984 6899999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHH----hcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCch
Q 003150 458 PACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYA----KCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPE 533 (844)
Q Consensus 458 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 533 (844)
.+|++.|+++.|.++|..|.+.|+.||..+|++|+.+|. +++...++...|+.+...+...| .+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HH
Confidence 999999999999999999999999999999999997743 33333333333333222233333 35
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003150 534 EAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ 613 (844)
Q Consensus 534 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 613 (844)
+|+.+|++|.+.|+.||..||+.++.++...+..+.+..+++.+...+..|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~----------------------------- 880 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ----------------------------- 880 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc-----------------------------
Confidence 699999999999999999999888865555555555544444444444443
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003150 614 RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV 653 (844)
Q Consensus 614 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 653 (844)
+..+|+++|.++++. .++|+.+|++|...|+.|+..
T Consensus 881 --~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 --KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred --chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 445566666665332 368999999999999999986
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-68 Score=614.58 Aligned_cols=523 Identities=17% Similarity=0.225 Sum_probs=409.8
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcc-----hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 003150 180 IDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCV-----LWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACI 254 (844)
Q Consensus 180 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 254 (844)
++...|..++..+++.|++++|.++|++|++++.. .++.++.+|.+.|.+++|+++|+.|.. ||..||+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 34444555555555555555555555555543332 233344445555555555555555542 555555555
Q ss_pred HHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCC----CCCccchHHHHHHHHhCCCh
Q 003150 255 LSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMP----QINLVTWNGMIAGHVQNGFM 330 (844)
Q Consensus 255 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 330 (844)
|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 55555555555555555555555555555555666666666666666666666665 36667777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHH--hCCCCchHHHHHHHHHhhhCCCHHHHHHHHH
Q 003150 331 NEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIR--NGVPLDAFLKSALIDIYFKCRDVKMACKVFK 408 (844)
Q Consensus 331 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 408 (844)
++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77788888888888888888888888888888888888888888865 5678888888888888888888888888888
Q ss_pred hCCC----CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC
Q 003150 409 ENTA----ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGK 484 (844)
Q Consensus 409 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 484 (844)
+|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 7654 566899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhcC----CCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 003150 485 CHVGSAITDMYAKCGRLDLAYKIFKRMS----EKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSA 560 (844)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 560 (844)
..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999995 589999999999999999999999999999999999999999999999
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH
Q 003150 561 CANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYA----KCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDS 636 (844)
Q Consensus 561 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 636 (844)
|++.|+++.|.++|+.|.+.|+.||..+|++++.++. ++++..++...|+.+...+...| .++|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~~A 831 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TSWA 831 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HHHH
Confidence 9999999999999999999999999999999998743 34444333334433322333333 4569
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 003150 637 LALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-- 714 (844)
Q Consensus 637 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 714 (844)
+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|+++++++++. .++|..++++|
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 999999999999999999999998888888888888888887653 6777888999999998532 47899999999
Q ss_pred -CCCCCHH
Q 003150 715 -PFAPDAG 721 (844)
Q Consensus 715 -~~~p~~~ 721 (844)
++.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 7777764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-68 Score=616.71 Aligned_cols=474 Identities=26% Similarity=0.446 Sum_probs=460.4
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhH
Q 003150 210 QRDCVLWNVMLNGYVTCGESDNATRAFKEMRISE-TKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANS 288 (844)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 288 (844)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhh
Q 003150 289 LLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQG 368 (844)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 368 (844)
|+++|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 003150 369 KEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIP 448 (844)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (844)
++++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHH
Q 003150 449 NTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQ 528 (844)
Q Consensus 449 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 528 (844)
|..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003150 529 NGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIK-DSCRSDNIAESVLIDLYAKCGNLDFART 607 (844)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~ 607 (844)
+|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 5999999999999999999999999999
Q ss_pred HHHhcC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCC
Q 003150 608 VFDMMQ-RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIP 685 (844)
Q Consensus 608 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 685 (844)
+|++|+ .|+..+|++|+.+|+.+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999997 48999999999999999999999999999976 6776 469999999999999999999999999884 775
Q ss_pred C
Q 003150 686 A 686 (844)
Q Consensus 686 p 686 (844)
.
T Consensus 561 k 561 (697)
T PLN03081 561 M 561 (697)
T ss_pred c
Confidence 4
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-37 Score=378.55 Aligned_cols=722 Identities=11% Similarity=0.059 Sum_probs=474.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCC---CCCCcccHHHHHHHHH
Q 003150 47 SHLGSILEACADHSVLQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRL---DLATSLPWNRMIRVFA 123 (844)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~---~~~~~~~~~~li~~~~ 123 (844)
..+..+-..+...++++.+...+..++.... .++..+..+...+...|++++|.++++++ .+++...|..+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3444455555677889999999988877654 34567778888888999999999998876 2345566888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHH
Q 003150 124 KMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARY 203 (844)
Q Consensus 124 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 203 (844)
..|++++|...|++..+.. +.+..++..+...+...|+++.|...++.+.+.. +.+..........+...|++++|..
T Consensus 205 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~ 282 (899)
T TIGR02917 205 SLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARE 282 (899)
T ss_pred hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999887753 3445667777778888899999998888887764 2233333334445566788888888
Q ss_pred HHhcCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCC
Q 003150 204 VFDKMSQRD---CVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLE 280 (844)
Q Consensus 204 ~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 280 (844)
.|+++.+.+ ...+..+...+...|++++|...|+...+.. +.+...+..+...+...|+.+.|...+..+.+.. +
T Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 360 (899)
T TIGR02917 283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-P 360 (899)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 887765422 2234444556677788888888887776643 2334455566666777777777777777776554 3
Q ss_pred CChhhhhHHHHHHhcCCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchh
Q 003150 281 FDPQVANSLLSMYSKSGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLP 357 (844)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 357 (844)
.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|+++.+....+ ......++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHH
Confidence 3566677777777777888888777776654 234456666677777777777777777776543221 223344555
Q ss_pred hhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCC---CCChhhHHHHHHHHHhcCCchHH
Q 003150 358 SICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENT---AADVVMFTAMISGYVLNGISHEA 434 (844)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 434 (844)
.+.+.|+++.|..++..+.+. .+.+..++..+...|...|++++|...|++.. +.+...+..+...+...|++++|
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 666777777777777776654 34456667777777777777777777776632 23455566666677777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 003150 435 LEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE- 513 (844)
Q Consensus 435 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 513 (844)
.+.|+++.... +.+..++..+...+...|+.+++...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+.+
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777776543 2244556666666666777777777777666543 23344555666677777777777777766643
Q ss_pred --CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHH
Q 003150 514 --KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESV 591 (844)
Q Consensus 514 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 591 (844)
.+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 245666777777777777777777777766543 2234455566666666777777777776666543 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQV 668 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 668 (844)
++..+...|++++|.++++.+.+ ++...|..+...+...|++++|++.|+++.+ ..|+..++..+..++.+.|++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCH
Confidence 66777777777777777766653 2445566666666677777777777777666 345555556666666666777
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003150 669 EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PF-APDAGVWGTLLGACRVHGNVELAEVASSHL 746 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 746 (844)
++|.+.++.+.+. .+.+...+..++..|.+.|++++|.+.++++ .. ++++.++..+...+...|+ ..|+..++++
T Consensus 753 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 7776666666552 2335566666666666667777776666665 22 2335566666666666666 5566666666
Q ss_pred hcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 747 FDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 747 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
+++.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-37 Score=377.12 Aligned_cols=714 Identities=10% Similarity=0.015 Sum_probs=353.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCC---CCCCcccHHHHHHHHHhcCCh
Q 003150 52 ILEACADHSVLQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRL---DLATSLPWNRMIRVFAKMGLF 128 (844)
Q Consensus 52 ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~---~~~~~~~~~~li~~~~~~g~~ 128 (844)
+...+...++++.+..++..+++.. +.+...+..+...+...|+++.|...|++. .+.+...|..++..+...|++
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~ 243 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF 243 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 3333444455555555555554432 233344444555555555555555555543 122333455555555555555
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcC
Q 003150 129 RFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKM 208 (844)
Q Consensus 129 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 208 (844)
++|...++.+.+.... +..........+...|+++.|...+..+.+.+. .+...+..+...+...|++++|...|+..
T Consensus 244 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 321 (899)
T TIGR02917 244 EEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQI 321 (899)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555543211 111111122222344555555555555554331 11222223333444555555555555544
Q ss_pred CC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhh
Q 003150 209 SQ---RDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQV 285 (844)
Q Consensus 209 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 285 (844)
.+ .+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+...|+.++|...+..+.+.. +.+...
T Consensus 322 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 399 (899)
T TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAA 399 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 32 123344445555555555555555555554432 2234444455555555555555555555554432 223444
Q ss_pred hhHHHHHHhcCCChhHHHHHhccCCCC---CccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhcc
Q 003150 286 ANSLLSMYSKSGRLYDALKLFELMPQI---NLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEV 362 (844)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 362 (844)
+..+...+...|++++|.+.|+...+. +...+..++..+.+.|++++|+.+++++... .+++..++..+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC
Confidence 445555555555555555555544321 1223444455555555555555555555443 223344455555555555
Q ss_pred ccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHH
Q 003150 363 ASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA---ADVVMFTAMISGYVLNGISHEALEKFR 439 (844)
Q Consensus 363 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 439 (844)
|+++.|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+
T Consensus 479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555432 23344444555555555555555555554322 234455555555555555555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC---CCh
Q 003150 440 WLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE---KDV 516 (844)
Q Consensus 440 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~ 516 (844)
++...+ +.+...+..+...+...|+++.+..++..+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+.
T Consensus 558 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 558 KAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 554432 1233344445555555555555555555554322 23344455555555555555555555555432 234
Q ss_pred HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003150 517 VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLY 596 (844)
Q Consensus 517 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 596 (844)
..|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...|
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 445555555555555555555555554432 2224445555555555555555555555555443 23344445555555
Q ss_pred HhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHH
Q 003150 597 AKCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
.+.|++++|.+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 555555555555555432 333444555555555555555555555555531 22333444445555555555555555
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 675 FHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 675 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
|+.+.+. .++++..+..++.++...|+ ++|+++++++ ...|+ +.+|..+...+...|+++.|...++++++.+|.
T Consensus 793 ~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5555442 22344555555555555555 5555555554 22232 344455555555555555555555555555555
Q ss_pred CCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 753 NSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 753 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
++.++..++.+|...|++++|.++++.|
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555555544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.3e-24 Score=257.73 Aligned_cols=652 Identities=12% Similarity=0.033 Sum_probs=375.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCCCC--CCcccH---------
Q 003150 47 SHLGSILEACADHSVLQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRLDL--ATSLPW--------- 115 (844)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~--~~~~~~--------- 115 (844)
..+....+-+...++.+.+++.+.+++.... .|+.++..+...+.+.|+.++|.+.+++..+ |+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 4577777888888899999998888876643 4677888888889999999999999988732 332221
Q ss_pred --------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH
Q 003150 116 --------NRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNH-TFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGS 186 (844)
Q Consensus 116 --------~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 186 (844)
-.+.+.+.+.|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+.+.. +.++..+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 222345778888888888888887653 22221 11111222234578888888888887764 44556677
Q ss_pred HHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHhhccCCch
Q 003150 187 SLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSV-TFACILSVCAVEAMTD 265 (844)
Q Consensus 187 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~ 265 (844)
.+-..+...|+.++|...|+++...... +...+...++.+...+..|... .+...+..+-......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 7777888888888888888876542211 0111111222222222222211 2222222222223334
Q ss_pred HHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC--C-CccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 003150 266 FGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ--I-NLVTWNGMIAGHVQNGFMNEALDLFRKMIL 342 (844)
Q Consensus 266 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 342 (844)
.+...+....+....|+... ......+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555554444333333221 2334566778888888888887754 3 556778888888888999999998888776
Q ss_pred cCCCCCc-cccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC---CChhhH
Q 003150 343 SGVKPDE-ITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA---ADVVMF 418 (844)
Q Consensus 343 ~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 418 (844)
....... ..+..++.. ........+...+.+.|++++|...|++... .+...+
T Consensus 332 ~~p~~~~~~~~~~ll~~-----------------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~ 388 (1157)
T PRK11447 332 LDPHSSNRDKWESLLKV-----------------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV 388 (1157)
T ss_pred hCCCccchhHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4322111 111111000 0000111223344455555555555554222 233444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhcccchHHHHHHHHHHHHhCCC--------CCccchH
Q 003150 419 TAMISGYVLNGISHEALEKFRWLIQEKIIPN-TVTLSSILPACADLAALKLGKELHCYILKNGLD--------GKCHVGS 489 (844)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--------~~~~~~~ 489 (844)
..+...+...|++++|++.|++..+.. |+ ...+..+...+ ..++.++|..++..+...... .....+.
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 445555555555555555555555431 22 22222222222 223344444443322111000 0001122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 490 AITDMYAKCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
.+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...+++..+.. |+
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~---------------- 527 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PN---------------- 527 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----------------
Confidence 333444455555555555554432 2 23344444455555555555555555544321 21
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------HHHHHHHHHHHhcCCh
Q 003150 567 LHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRK----QE---------AAWNSMIAAYGCHGHL 633 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~ 633 (844)
+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.
T Consensus 528 ------------------~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 528 ------------------DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred ------------------CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 2222223333445566666666666665431 11 1123456677888889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHH
Q 003150 634 KDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETIN 712 (844)
Q Consensus 634 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (844)
++|+++++. .+++...+..+...+...|++++|+..|+.+.+ ..| ++..+..++.+|...|++++|++.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999888772 233445666677788888999999999888876 345 57788888889999999999998888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHhcCCcchHHHHHHHH-HHc
Q 003150 713 SM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG------YYVLLSNIHADAGQWGNVNKIRRLM-KER 783 (844)
Q Consensus 713 ~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m-~~~ 783 (844)
.. ...|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|...++.. ...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 77 34454 466777777788889999999999999888776654 5556788889999999999876644 444
Q ss_pred CC
Q 003150 784 GV 785 (844)
Q Consensus 784 ~~ 785 (844)
|+
T Consensus 742 ~~ 743 (1157)
T PRK11447 742 GI 743 (1157)
T ss_pred CC
Confidence 44
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.5e-23 Score=252.59 Aligned_cols=622 Identities=10% Similarity=0.019 Sum_probs=400.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccC
Q 003150 118 MIRVFAKMGLFRFALLFYFKMLSCGIRP-DNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENR 196 (844)
Q Consensus 118 li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 196 (844)
..+.+...++.+.|.+.++++... .| +...+..+...+...|+.++|.+.++.+.+.. |+...+..+-..+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~---- 105 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTM---- 105 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHH----
Confidence 344566666777777777766653 33 33445555555566666666666666666554 2211111000000
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHhhccCCchHHHHHHHHHH
Q 003150 197 CIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSV-TFACILSVCAVEAMTDFGTQVHGVVV 275 (844)
Q Consensus 197 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 275 (844)
....++...+..+...+.+.|++++|++.|+.+.+.. +|+.. ............++.++|...++.+.
T Consensus 106 ----------~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll 174 (1157)
T PRK11447 106 ----------LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLN 174 (1157)
T ss_pred ----------HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHH
Confidence 0001111122333445677777777777777776543 22221 11111122223467777777777777
Q ss_pred HhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCCccch---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccc
Q 003150 276 SVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQINLVTW---NGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITF 352 (844)
Q Consensus 276 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 352 (844)
+.. +.+...+..+...+...|+.++|+..|+++........ ..........+....+...+...
T Consensus 175 ~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~------------ 241 (1157)
T PRK11447 175 ADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY------------ 241 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH------------
Confidence 664 33556667777778888888888888877654221100 00000011111122222222221
Q ss_pred ccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCC---CCChhhHHHHHHHHHhcC
Q 003150 353 SSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENT---AADVVMFTAMISGYVLNG 429 (844)
Q Consensus 353 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 429 (844)
+..+......+.+...+....+....|+.. ...+...+...|++++|+..|++.. +.+...+..+...|.+.|
T Consensus 242 ---l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 242 ---LQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQG 317 (1157)
T ss_pred ---HHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 111222222334444444443332223221 2234556677788888888887643 235677778888888888
Q ss_pred CchHHHHHHHHHHHcCCCCCh-hhHH------------HHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHH
Q 003150 430 ISHEALEKFRWLIQEKIIPNT-VTLS------------SILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYA 496 (844)
Q Consensus 430 ~~~~A~~~~~~m~~~g~~p~~-~t~~------------~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 496 (844)
++++|+..|++..+....... ..+. ..-..+.+.|++++|...+..+++... .+...+..+...|.
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAM 396 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 888888888887765322111 1111 112345677888888888888887642 34456667888899
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC--------ChHHHHHHHHHHhchh
Q 003150 497 KCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKH--------DCMSLSAALSACANLH 565 (844)
Q Consensus 497 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~ 565 (844)
..|++++|.+.|++..+ | +...+..+...|. .++.++|+..++.+....... ....+......+...|
T Consensus 397 ~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 397 ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 99999999999988764 3 4556666777664 457888988887664331110 0112344556677889
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 003150 566 ALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNSMIAAYGCHGHLKDSLALFHE 642 (844)
Q Consensus 566 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 642 (844)
++++|.+.++...+.. +.+...+..+...|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..+++
T Consensus 476 ~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 476 KWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999998765 23566778899999999999999999998754 3 555666666677889999999999988
Q ss_pred HHHCCCCCCHH---------HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 643 MLNNKIKPDHV---------TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINS 713 (844)
Q Consensus 643 m~~~g~~pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (844)
+......++.. .+..+...+...|+.++|+.+++. .++++..+..+.+.+.+.|++++|++.+++
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65432222221 123455678899999999998872 244667788899999999999999999999
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 714 M-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 714 ~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
. ...|+ ...+..+...+...|+.++|+..++++++..|+++..+..++.++...|++++|.++++.+....
T Consensus 629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8 55565 68899999999999999999999999999999999999999999999999999999999887654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.4e-21 Score=225.76 Aligned_cols=641 Identities=11% Similarity=-0.001 Sum_probs=379.6
Q ss_pred hcCChhhHhhhccCC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHH
Q 003150 93 LCGGFIDAGNMFPRL---DLATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLV 169 (844)
Q Consensus 93 ~~g~~~~a~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 169 (844)
..|++++|...|++. .+.+...+..|.+.|.+.|++++|+...++..+. .|+...|..++..+ ++...|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 347888888888765 2233555777888888888888888888887764 35554454444333 777777788
Q ss_pred HHHHHHhCCCCCcchHHHHHHH--------hhccCChHHHHHHHhcCCCCC--cchHH-HHHHHHHhCCChhHHHHHHHH
Q 003150 170 HDMIWLMGCEIDVFVGSSLVKL--------YTENRCIDEARYVFDKMSQRD--CVLWN-VMLNGYVTCGESDNATRAFKE 238 (844)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~ 238 (844)
++.+.+.. +.+..++..+... |.+.+...++++ .+...++ ..... .+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88777764 3334444444444 666655555655 2222232 33333 336777788888888888888
Q ss_pred HHhCCCCCChhhHHHHHHHhhc-cCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC-----C
Q 003150 239 MRISETKPNSVTFACILSVCAV-EAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ-----I 312 (844)
Q Consensus 239 m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~ 312 (844)
+.+.+... ..-...+-.++.. .++ +.+..++. ..+..++.+...+.+.|.+.|+.++|.+++.+++. |
T Consensus 208 L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 87765322 2223333334444 233 44444422 12334556666666666666666666666666543 2
Q ss_pred CccchHHHHHHHHhCCChh-HHHHHHHHHHHcCCCCCccc-cccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHH
Q 003150 313 NLVTWNGMIAGHVQNGFMN-EALDLFRKMILSGVKPDEIT-FSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSAL 390 (844)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 390 (844)
+..+|-- -+.+.+... .|..-|.+ ...++... ...++..+.+.++++.++++.. +.|.... ..
T Consensus 282 ~~~~~~~---~l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~ 346 (987)
T PRK09782 282 QEKSWLY---LLSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LE 346 (987)
T ss_pred ccHHHHH---HHHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HH
Confidence 2222222 233333221 11111111 00011000 0111333334444443333211 1222221 11
Q ss_pred HHHh-h-hCCCHHHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHHc-C-CCCChhhHHHHHHHHhcc
Q 003150 391 IDIY-F-KCRDVKMACKVFKENTAA---DVVMFTAMISGYVLNGISHEALEKFRWLIQE-K-IIPNTVTLSSILPACADL 463 (844)
Q Consensus 391 i~~~-~-~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~ 463 (844)
+..+ . ..+...++...+..+-.. +....--+.--..+.|+.++|..+|+..... + -.++.....-++..+.+.
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 1111 1 113333333333332221 2222222222334455555555555555441 1 112222222344444443
Q ss_pred cchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCH---HHHHHHHHhcCC---C--ChHhHHHHHHHHHHcCCchHH
Q 003150 464 AALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRL---DLAYKIFKRMSE---K--DVVCWNSMITRYSQNGKPEEA 535 (844)
Q Consensus 464 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~---~--~~~~~~~li~~~~~~g~~~~A 535 (844)
+.+.....+.... -+.+...- ..-.|+. ..+...+..... + +...|..+..++.. ++.++|
T Consensus 427 ~~~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 427 PYLATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred CcccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 3322221111110 00000000 0001111 112222222221 2 56678888877776 889999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003150 536 IDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRK 615 (844)
Q Consensus 536 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 615 (844)
+..+.+..... |+......+..++...|++++|...++.+... +|+...+..+...+.+.|++++|...|+...+.
T Consensus 496 i~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99888877643 77655444555567899999999999987654 344445567788889999999999999987764
Q ss_pred ChHHHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHH
Q 003150 616 QEAAWN---SMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHY 691 (844)
Q Consensus 616 ~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 691 (844)
+...++ .+.......|++++|+..+++..+ ..|+...+..+..++.+.|++++|+..|+.... +.| ++..+
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~ 646 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQ 646 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHH
Confidence 333233 333344455999999999999998 678888888899999999999999999999876 456 67888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 692 ACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
..+...+...|++++|++.+++. ...|+ +..+..+..++...|+++.|+..++++++++|++..+....+++.....+
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 99999999999999999999988 55665 68899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHH
Q 003150 770 WGNVNKIRRLMKE 782 (844)
Q Consensus 770 ~~~a~~~~~~m~~ 782 (844)
++.|.+-++.--.
T Consensus 727 ~~~a~~~~~r~~~ 739 (987)
T PRK09782 727 FRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHhh
Confidence 9998886664433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=2.3e-20 Score=215.75 Aligned_cols=664 Identities=8% Similarity=-0.046 Sum_probs=453.1
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 003150 60 SVLQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRLD--LATSLPWNRMIRVFAKMGLFRFALLFYFK 137 (844)
Q Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 137 (844)
|+...|...+.+.++..... +.++..|...|.+.|+.++|+..+++.- .|+-..|..++..+ +++.+|...|++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 88999999999998887644 7888999999999999999999998873 33333343334333 889999999999
Q ss_pred HHhCCCCCCcc-cHHHHHHHH-----hccCCchHHHHHHHHHHHhCCCCCcchHHHH-HHHhhccCChHHHHHHHhcCCC
Q 003150 138 MLSCGIRPDNH-TFPSVMKAC-----SALGNLRFGKLVHDMIWLMGCEIDVFVGSSL-VKLYTENRCIDEARYVFDKMSQ 210 (844)
Q Consensus 138 m~~~g~~p~~~-~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~ 210 (844)
+.... |+.. ++..+.... ..-...+.|.+.++ .......|++.+.... ...|.+.|++++|.+.+.++.+
T Consensus 134 l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 134 LLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 99853 5443 333333330 12234467777776 4444444456655555 8999999999999999999876
Q ss_pred CC---cchHHHHHHHHHh-CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCC-CChhh
Q 003150 211 RD---CVLWNVMLNGYVT-CGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLE-FDPQV 285 (844)
Q Consensus 211 ~~---~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~ 285 (844)
.+ ..-+..|-..|.. .++ +++..+++. .++-+......+...+...|+.+.|..++..+...-.. |...+
T Consensus 211 ~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 211 QNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred cCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 32 2335666677887 366 778777553 33467788889999999999999999999987654332 44433
Q ss_pred hhHHHHHHhcCCChh-HHHHHhccCCCCCc-cchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhh--c
Q 003150 286 ANSLLSMYSKSGRLY-DALKLFELMPQINL-VTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSIC--E 361 (844)
Q Consensus 286 ~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~ 361 (844)
.+..+.+.+... .|..-|.+=..++. ...-.++..+.+.+.++-+.++.. ..|.... ..++... .
T Consensus 286 ---~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~ 354 (987)
T PRK09782 286 ---WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVA 354 (987)
T ss_pred ---HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccc
Confidence 333355555543 11111111000111 122234677888888886665522 3444332 2333222 3
Q ss_pred cccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC--C----ChhhHHHHHHHHHhcCC---ch
Q 003150 362 VASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA--A----DVVMFTAMISGYVLNGI---SH 432 (844)
Q Consensus 362 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~ 432 (844)
.+...++.+.+..+.+.. +-+....-.+.-...+.|+.++|.++|....+ + +...-+-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355666666677776652 33555555666667789999999999987544 2 23345577788888877 34
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHh-CC-CC--CccchHHHHHHHHhcCCHHHHHHHH
Q 003150 433 EALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKN-GL-DG--KCHVGSAITDMYAKCGRLDLAYKIF 508 (844)
Q Consensus 433 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~ 508 (844)
+++.+-..+ +..+- |.-.|....+.......... +. ++ +...+..+..++.. ++.++|...|
T Consensus 434 ~~~~l~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 434 KVAILSKPL-------PLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhcccc-------ccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 444332222 22211 11223333333333333222 22 22 44566677777776 7888899877
Q ss_pred HhcCCCChHhHHHH--HHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCch
Q 003150 509 KRMSEKDVVCWNSM--ITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDN 586 (844)
Q Consensus 509 ~~m~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 586 (844)
.+.....+..++.+ ...+.+.|++++|...|+++... .|+...+..+..++...|+.++|...++...+.. +...
T Consensus 500 ~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~ 576 (987)
T PRK09782 500 LQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDN 576 (987)
T ss_pred HHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccH
Confidence 76654322344444 34446899999999999987554 4555556666777888999999999999998765 2233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACG 663 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~ 663 (844)
..+..+.....+.|++++|...|++..+ |+...|..+...+.+.|++++|+..|++..+ ..|+.. .+..+..++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3333444445566999999999998875 6788899999999999999999999999999 678775 5666666899
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 003150 664 HAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVELAE 740 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~ 740 (844)
..|+.++|+..|+...+ ..| ++..+..+..++.+.|++++|++.+++. ...|+. .+............+++.+.
T Consensus 655 ~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 655 DSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999876 456 6888999999999999999999999998 777874 56656666677888899999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHhcCCc
Q 003150 741 VASSHLFDLDPQNSGYYVLLSNIHADAGQW 770 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 770 (844)
..+++...++|+.. +....+.++...++.
T Consensus 732 ~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 732 EEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHhhcCccch-hccccchHhhhcccc
Confidence 99999999999877 766676666655554
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=6.2e-19 Score=179.63 Aligned_cols=442 Identities=14% Similarity=0.133 Sum_probs=351.2
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc-cccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 003150 317 WNGMIAGHVQNGFMNEALDLFRKMILSGVKPDE-ITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYF 395 (844)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 395 (844)
...+..-..+.|++++|.+.-...-... |+. .+...+-..+.+..+.+....--...++. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 3445566677888888887655443332 222 22222223334444444433322222222 2345678899999999
Q ss_pred hCCCHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHH-hcccchHHHHH
Q 003150 396 KCRDVKMACKVFKENTA---ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPAC-ADLAALKLGKE 471 (844)
Q Consensus 396 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~ 471 (844)
..|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+..+ ...|.++++..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998654 4567899999999999999999999988876 457666554444333 33678888888
Q ss_pred HHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 003150 472 LHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKD---VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVK 548 (844)
Q Consensus 472 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 548 (844)
.+-.+++... .=...|+.|...+...|++..|..-|++...-| ...|-.|...|...+.+++|+..+.+... ..
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lr 282 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LR 282 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cC
Confidence 8877776532 123467778888899999999999999887633 46788899999999999999999988765 45
Q ss_pred CC-hHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHH
Q 003150 549 HD-CMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMI 624 (844)
Q Consensus 549 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 624 (844)
|+ .+.+..+...|...|.++.|+..++..+... +.-...|+.|.+++-..|++.+|...+.+... ....+.+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 65 5677777778899999999999999988763 22356899999999999999999999998875 3467899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAG 702 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 702 (844)
..|...|.+++|..+|....+ +.|.- ..++.|...+-+.|++++|+..+++..+ +.|+ ...|+.|+..|-..|
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhh
Confidence 999999999999999999998 88887 4788999999999999999999999854 8896 789999999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 703 RLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 703 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
+.+.|.+.+.+. .+.|. +...+.|...+...|+..+|++.|+.+++++|+.+.+|..|.....-..+|.+
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999888 67777 48899999999999999999999999999999999999999888777778877
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=7.1e-19 Score=190.76 Aligned_cols=304 Identities=14% Similarity=0.152 Sum_probs=237.2
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhchhch
Q 003150 494 MYAKCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHD---CMSLSAALSACANLHAL 567 (844)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 567 (844)
.+...|++++|...|+++.+ | +..+|..+...+.+.|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34567778888888887764 2 445677777888888888888888888776542222 23566667777788888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHHHHH
Q 003150 568 HYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQ--------EAAWNSMIAAYGCHGHLKDSLAL 639 (844)
Q Consensus 568 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l 639 (844)
+.|..++..+.+.. +.+...++.++.+|.+.|++++|.+.++.+.+.+ ...|..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888877652 3456778888888999999999999888876421 12456677888899999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003150 640 FHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR--MEHYACMVDLFGRAGRLNKALETINSM-P 715 (844)
Q Consensus 640 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 715 (844)
|+++.+. .|+. ..+..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999884 4554 46777778899999999999999999763 343 466788999999999999999999998 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh--cCCcchHHHHHHHHHHcCCccCCCeeE
Q 003150 716 FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD--AGQWGNVNKIRRLMKERGVQKIPGYSW 793 (844)
Q Consensus 716 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~~~~~~s~ 793 (844)
..|+...+..+...+...|+.+.|...++++++..|+++.....+...+.. .|+.+++..++++|.++++++.|.+.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 678877778888899999999999999999999999988666555544433 569999999999999999999999887
Q ss_pred EEECCEEEEE
Q 003150 794 IELNNITHLF 803 (844)
Q Consensus 794 i~~~~~~~~f 803 (844)
..++...+.+
T Consensus 358 ~~cg~~~~~~ 367 (389)
T PRK11788 358 RNCGFTARTL 367 (389)
T ss_pred CCCCCCCccc
Confidence 7776655443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-18 Score=177.18 Aligned_cols=411 Identities=14% Similarity=0.172 Sum_probs=323.6
Q ss_pred hhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh---CCCCChhhHHHHHHHHHhcCCchHHH
Q 003150 359 ICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE---NTAADVVMFTAMISGYVLNGISHEAL 435 (844)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 435 (844)
..+.|++++|++--..+-... +.+....-.+-..+....+.+.....-.. ....-..+|..+.+.+-..|+.++|+
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHH
Confidence 445677877776544443332 22222333334456666666654433222 12234568999999999999999999
Q ss_pred HHHHHHHHcCCCCC-hhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccc-hHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003150 436 EKFRWLIQEKIIPN-TVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHV-GSAITDMYAKCGRLDLAYKIFKRMSE 513 (844)
Q Consensus 436 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (844)
.+++.+++. +|+ ...|..+-.++...|+.+.+.+.+...++.. |+... .+-+.......|++++|...+.+..+
T Consensus 137 ~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999885 554 4468888888999999999999998887653 33322 23344556678999999998887654
Q ss_pred --C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHH
Q 003150 514 --K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAE 589 (844)
Q Consensus 514 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 589 (844)
| =.+.|+.|...+-..|+...|+..|++... +.|+ ...|..+-..+...+.++.|...+....... +.....+
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 3 357899999999999999999999999876 4566 3456666666666677777776666555432 2244566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhh
Q 003150 590 SVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHA 665 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~ 665 (844)
..+...|-..|.+|-|+..+++..+ | -...||.|..++...|+..+|...|++.+. +.|+.. ..+.|...+...
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHh
Confidence 6788889999999999999998875 4 367999999999999999999999999998 788874 788899999999
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 003150 666 GQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVELAEVA 742 (844)
Q Consensus 666 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~ 742 (844)
|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++. .++|.. ..++.+.+.+...|+++.|.+.
T Consensus 368 ~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 999999999998854 6775 678899999999999999999999988 889985 8999999999999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 743 SSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 743 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
+++++..+|.-..++..|+.+|...|+..+|..-++....
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999997775543
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-15 Score=164.92 Aligned_cols=671 Identities=13% Similarity=0.083 Sum_probs=328.4
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCCC------CCCccc-----HHHHHHHHHhcCC---
Q 003150 62 LQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRLD------LATSLP-----WNRMIRVFAKMGL--- 127 (844)
Q Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~------~~~~~~-----~~~li~~~~~~g~--- 127 (844)
++.+..+..-+...+-.. .+|..+...|.+.|..++...+++.-. ..++.+ ++.+...|+..+.
T Consensus 24 LPD~~ev~~IL~~e~a~l--e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek 101 (1018)
T KOG2002|consen 24 LPDATEVLSILKAEQAPL--EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEK 101 (1018)
T ss_pred CCChHHHHHHHHHhcCch--hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336667776666665433 456777778999999999888887643 112211 2223222322221
Q ss_pred --------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC--chHHHHHHHHHHHhCCCCCcchHHHHHHH--hhcc
Q 003150 128 --------FRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGN--LRFGKLVHDMIWLMGCEIDVFVGSSLVKL--YTEN 195 (844)
Q Consensus 128 --------~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~--y~~~ 195 (844)
...|..+|...-.....-+...+.. -..|...++ ++.|.+.|..+.+.. ++++- ..|..+ ....
T Consensus 102 ~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynk 177 (1018)
T KOG2002|consen 102 KKDEKDELFDKATLLFDLADKIDMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNK 177 (1018)
T ss_pred hcchhHHHHHHHHHHhhHHHHhhccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhcc
Confidence 2233333333322111111110000 001112222 355555555555543 22221 112222 2234
Q ss_pred CChHHHHHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHh----hccCCch
Q 003150 196 RCIDEARYVFDKMSQ------RDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVC----AVEAMTD 265 (844)
Q Consensus 196 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~ 265 (844)
|++-.|..+|..... +|+. -.+-.++.+.|+.+.|+..|.+..+- .|+.+.-...|..+ -......
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHH
Confidence 566666666665322 1221 11223445666666666666666543 23211111111111 1112233
Q ss_pred HHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCC------ccchHHHHHHHHhCCChhHHHHHHHH
Q 003150 266 FGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQIN------LVTWNGMIAGHVQNGFMNEALDLFRK 339 (844)
Q Consensus 266 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~ 339 (844)
.|.+++...-+.. ..++.+.+.|.+.|.-.|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3333333333222 2345555666666666666666555554443211 12344555556666666666666554
Q ss_pred HHHcCCCCCcccc--ccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCC----CHHHHHHHHHhCCCC
Q 003150 340 MILSGVKPDEITF--SSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCR----DVKMACKVFKENTAA 413 (844)
Q Consensus 340 m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~ 413 (844)
-... .||.+++ ..+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+...+
T Consensus 333 s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 333 SLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 4432 3333222 233444445555555555555554442 233334444444444433 233344444333221
Q ss_pred ---ChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHH
Q 003150 414 ---DVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSA 490 (844)
Q Consensus 414 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 490 (844)
|...|-.+...+-...- ..++..|.... +.+...+-.+.+.+.|.
T Consensus 410 ~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~-------------------------------d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDP-WASLDAYGNAL-------------------------------DILESKGKQIPPEVLNN 457 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHH-------------------------------HHHHHcCCCCCHHHHHh
Confidence 22333333333222221 11233332221 12223344445555566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-------Ch------HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHH-HH
Q 003150 491 ITDMYAKCGRLDLAYKIFKRMSEK-------DV------VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSL-SA 556 (844)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 556 (844)
+...+...|.++.|...|+..... |. .+--.+...+-..++++.|.+.++...... |+-++- ..
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHH
Confidence 666666666666666666544321 11 011113333444556666666666665542 443322 11
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHH---
Q 003150 557 ALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQEAAWNSMIAAYG--- 628 (844)
Q Consensus 557 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~--- 628 (844)
+....-..+.+.+|...+....... ..++..++.+.+.|.+..++.-|.+-|..+.. +|+.+.-+|.+.|.
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 2111112234555555555554432 23344444555566666666666664443332 24444444444332
Q ss_pred ---------hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 003150 629 ---------CHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLF 698 (844)
Q Consensus 629 ---------~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 698 (844)
..+..++|+++|.+.++ ..|- ...-+.+.-.+++.|++++|+.+|.+.++. ......+|-.+..+|
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCY 690 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHH
Confidence 22356677777777776 3343 345566666677778888888888777763 223445677777777
Q ss_pred HhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH---------
Q 003150 699 GRAGRLNKALETINSM----PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA--------- 765 (844)
Q Consensus 699 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--------- 765 (844)
...|++-.|++.|+.. .-+.+..+...|..++...|.+.+|...+..+..+.|.|+..-..++-+..
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 7888888888777766 223456777777777777777888888888888888877776666555433
Q ss_pred ----------hcCCcchHHHHHHHHHHcCC
Q 003150 766 ----------DAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 766 ----------~~g~~~~a~~~~~~m~~~~~ 785 (844)
..+..++|.++|..|...+-
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23566778888888876553
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.7e-16 Score=181.17 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=194.4
Q ss_pred cCCchHHHHHHHHHHHCC-CCCC-hHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003150 529 NGKPEEAIDLFRQMAIEG-VKHD-CMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFAR 606 (844)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 606 (844)
.+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++..+... +.....+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 457788888888877654 2343 3445555556677788888888888877653 223556777888889999999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhc
Q 003150 607 TVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEY 682 (844)
Q Consensus 607 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 682 (844)
..|+...+ .+...|..+...|...|++++|+..|++.++ +.|+. ..+..+...+...|++++|+..|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99987654 3577899999999999999999999999998 56765 46667777888999999999999998763
Q ss_pred CCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H------HHHHHHHH-HHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 683 GIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-G------VWGTLLGA-CRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 683 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~------~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
.+.++..|..++.++...|++++|++.+++. .+.|+. . .+...... +...|++++|+..++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 2335788999999999999999999999886 444431 1 11111222 334699999999999999999999
Q ss_pred CchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 754 SGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 754 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...+..|+.+|...|++++|.+.+++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999998877543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1.1e-17 Score=181.36 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=171.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCc---hHHHHHHHHHhhhCCC
Q 003150 323 GHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLD---AFLKSALIDIYFKCRD 399 (844)
Q Consensus 323 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 399 (844)
.+...|++++|+..|.++.+.+. .+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666665421 1223444455555555555555555555554322111 2456677777888888
Q ss_pred HHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHH
Q 003150 400 VKMACKVFKENTA---ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYI 476 (844)
Q Consensus 400 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 476 (844)
++.|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+...+..++.....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------------- 180 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA---------------------- 180 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH----------------------
Confidence 8888888877654 455677777888888888888888888777654322211000
Q ss_pred HHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHH
Q 003150 477 LKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMS 553 (844)
Q Consensus 477 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 553 (844)
..+..+...+.+.|++++|...|+++.+ | +...+..+...|.+.|++++|++.|+++...+......+
T Consensus 181 ---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 181 ---------HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ---------HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0123345566777888888877777653 2 345667777788888888888888888776431111223
Q ss_pred HHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcC
Q 003150 554 LSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHG 631 (844)
Q Consensus 554 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 631 (844)
+ +.++.+|.+.|++++|.+.++++.+ |+...+..++..+.+.|
T Consensus 252 ~-----------------------------------~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g 296 (389)
T PRK11788 252 L-----------------------------------PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQE 296 (389)
T ss_pred H-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhC
Confidence 3 3444555555555555555554432 34344455555566666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---hCCHHHHHHHHHHhHhhcCCCCCch
Q 003150 632 HLKDSLALFHEMLNNKIKPDHVTFLAIISACGH---AGQVEAGIHYFHCMTEEYGIPARME 689 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 689 (844)
++++|..+++++.+ ..|+..++..++..+.. .|+.+++...++.+.++ ++.|++.
T Consensus 297 ~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 297 GPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 66666666666555 35666665555554432 34566666666666553 4455444
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.1e-14 Score=153.95 Aligned_cols=627 Identities=14% Similarity=0.093 Sum_probs=380.3
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhC-C---CCC--h-hhHhHHHHHHHhcC-----------ChhhHhhhccCCC
Q 003150 47 SHLGSILEACADHSVLQQGRQVHSQFILNG-I---SDN--A-ALGAKILGMYVLCG-----------GFIDAGNMFPRLD 108 (844)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~~~~i~~~~~~~~-~---~~~--~-~~~~~l~~~~~~~g-----------~~~~a~~~f~~~~ 108 (844)
+.+..+-..+...|..+++..|...-.... . .++ . ..++.|...|...+ .+..|..+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 566666677778888888887766554111 0 111 1 22233333332322 3445666665543
Q ss_pred CCCcccHHHHH-H--HHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHHh--ccCCchHHHHHHHHHHHh--CCC
Q 003150 109 LATSLPWNRMI-R--VFAKMGL--FRFALLFYFKMLSCGIRPDNHTFPSVMKACS--ALGNLRFGKLVHDMIWLM--GCE 179 (844)
Q Consensus 109 ~~~~~~~~~li-~--~~~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~--g~~ 179 (844)
.-+...+..++ + .|...|. .+.|...|....... |+ .....+.++|. ..+++..|..++...+.. ...
T Consensus 122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s--p~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS--PD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC--Cc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 22222222211 1 2333343 478888888877643 22 23445556654 568999999999997664 456
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHH---h---CCChhHHHHHHHHHHhCCCCCChhhHHH
Q 003150 180 IDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYV---T---CGESDNATRAFKEMRISETKPNSVTFAC 253 (844)
Q Consensus 180 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 253 (844)
||+.+.-. ..+.++|+.+.|...|.+..+-|+..-++++.... . ...+..++.++...-... .-|+...+.
T Consensus 199 aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred CCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 77665433 66779999999999999998866655454443221 1 223445555555544322 345667777
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhcCCC--ChhhhhHHHHHHhcCCChhHHHHHhccCCC--CCc--cchHHHHHHHHhC
Q 003150 254 ILSVCAVEAMTDFGTQVHGVVVSVGLEF--DPQVANSLLSMYSKSGRLYDALKLFELMPQ--INL--VTWNGMIAGHVQN 327 (844)
Q Consensus 254 ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~ 327 (844)
|-.-+.-.|++..+..+...+.+.-... -...|-.+..+|...|+++.|...|.+..+ +|. ..+-.+...+.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 8888889999999999999988765321 234567788999999999999999987765 333 3455678899999
Q ss_pred CChhHHHHHHHHHHHcCCCCC-ccccccchhhhhccc----cchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCC---
Q 003150 328 GFMNEALDLFRKMILSGVKPD-EITFSSFLPSICEVA----SIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRD--- 399 (844)
Q Consensus 328 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 399 (844)
|+.+.+...|+..... .|| ..|...+-..|...+ ..+.|..++....+.- +.|...|-.+..+|-...-
T Consensus 356 ~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred chHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH
Confidence 9999999999999875 344 455555555555553 4566677777666654 5577777777777765443
Q ss_pred ---HHHHHHHHHh-CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHc---CCCCChh-----hHHHHH-HHHhcccch
Q 003150 400 ---VKMACKVFKE-NTAADVVMFTAMISGYVLNGISHEALEKFRWLIQE---KIIPNTV-----TLSSIL-PACADLAAL 466 (844)
Q Consensus 400 ---~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~-----t~~~ll-~a~~~~~~~ 466 (844)
+..|..++.. +....+...|.+...+...|.+.+|...|...... ...+|.. |..--+ ...-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 3334433333 33466778899999999999999999999988765 2334442 111112 222344566
Q ss_pred HHHHHHHHHHHHhCCCCCccchHHHHHHHHhc-------CCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHH
Q 003150 467 KLGKELHCYILKNGLDGKCHVGSAITDMYAKC-------GRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAI 536 (844)
Q Consensus 467 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 536 (844)
+.|.+.+..+++.. -..|++|.+. +...+|...+..... .|+..|+-+...|.+...+..|.
T Consensus 513 ~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 66666666666542 1234444443 344455555555432 34555555555666666666666
Q ss_pred HHHHHHHHCC-CCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 003150 537 DLFRQMAIEG-VKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR- 614 (844)
Q Consensus 537 ~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 614 (844)
+-|......- ..+|..+..+|-+.|... +.+.--.| -...+..+.|++.|.++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~~rn~-----------ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQA------------LHNPSRNP-----------EKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHH------------hcccccCh-----------HHHHHHHHHHHHHHHHHHhc
Confidence 6555444321 224444444443322111 00000000 0122445666666666554
Q ss_pred --CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 003150 615 --KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA 692 (844)
Q Consensus 615 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 692 (844)
+|...=|-+.-.++..|++.+|..+|.+..+.. .-+..+|..+..+|...|++..|++.|+...+++.-..+.+...
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 344555566666677777777777777776653 22334566666777777777777777777666655444666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 003150 693 CMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
+|..++.++|++.+|.+.....
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777777777777665554
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.7e-15 Score=176.15 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=98.0
Q ss_pred hcCCHHHHHHHHHhcCCCC---hH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhhhCCH
Q 003150 598 KCGNLDFARTVFDMMQRKQ---EA-AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-----VTFLAIISACGHAGQV 668 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~ 668 (844)
..|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .|.. .....+..++...|++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccH
Confidence 3455555555555554321 10 1111344555556666666666655442 2211 2333444455556666
Q ss_pred HHHHHHHHHhHhhcC----------CCCC---chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 003150 669 EAGIHYFHCMTEEYG----------IPAR---MEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVH 733 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 733 (844)
++|..+++.+.+... -.|+ ...+..++.++...|++++|++.++++ ...|+ ...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 666666655544210 0111 123345556666666666666666665 33333 45666666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 734 GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|+.+.|+..++++++++|+++..+..++.++...|+|++|..+.+.+.+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666665544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=3.4e-15 Score=173.57 Aligned_cols=402 Identities=9% Similarity=0.006 Sum_probs=307.7
Q ss_pred CccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh---CCCCChhhHHHHHHH
Q 003150 348 DEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE---NTAADVVMFTAMISG 424 (844)
Q Consensus 348 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~ 424 (844)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++ ..+.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33344455667788899999999999987632 55666799999999999999999999998 444567778889999
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHH
Q 003150 425 YVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLA 504 (844)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 504 (844)
+...|++++|+..+++.... .|+...+..+..++...|+.+.|...+..+.+.... +......+...+.+.+..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHH
Confidence 99999999999999999886 344333777777888999999999999999987543 444555678888899999999
Q ss_pred HHHHHhcCCCChH--------hHHHHHHHHH-----HcCCc---hHHHHHHHHHHHC-CCCCChH-HHH----HHHHHHh
Q 003150 505 YKIFKRMSEKDVV--------CWNSMITRYS-----QNGKP---EEAIDLFRQMAIE-GVKHDCM-SLS----AALSACA 562 (844)
Q Consensus 505 ~~~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~ 562 (844)
.+.++.... ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 999998876 211 1222222222 12234 7789999999865 2334332 222 1245567
Q ss_pred chhchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCChH
Q 003150 563 NLHALHYGKEIHSLMIKDSCR-SDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQ-------EAAWNSMIAAYGCHGHLK 634 (844)
Q Consensus 563 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 634 (844)
..|++++|...++.+.+.+.+ |+. ....+...|...|++++|+..|+++...+ ...+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 789999999999999987632 332 22235789999999999999999876422 235666777889999999
Q ss_pred HHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh
Q 003150 635 DSLALFHEMLNNK-----------IKPDH---VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR 700 (844)
Q Consensus 635 ~A~~l~~~m~~~g-----------~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 700 (844)
+|..+++++.+.. -.|+. ..+..+...+...|+.++|++.++++... .+.+...+..++.++..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 9999999999842 11232 23445666788999999999999999763 34468889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 701 AGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 701 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.|++++|++.+++. ...|+ ...+..+.......|+++.|+..++++++.+|+++.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999998 66777 57777788888999999999999999999999997553
No 22
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.78 E-value=8.1e-15 Score=156.20 Aligned_cols=601 Identities=11% Similarity=0.039 Sum_probs=346.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCC
Q 003150 133 LFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRD 212 (844)
Q Consensus 133 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 212 (844)
.++-.|...|+.|+.+||..+|..||..|+.+.|- ++..|.-...+.+..+++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56677788888888888888888888888888888 8888888777888888888888888888877665 567
Q ss_pred cchHHHHHHHHHhCCChhH---HHHHHHH----HHhCCCCCChhhHHHHHHHhhccC-Cc------hHHHHHHHHHHHhc
Q 003150 213 CVLWNVMLNGYVTCGESDN---ATRAFKE----MRISETKPNSVTFACILSVCAVEA-MT------DFGTQVHGVVVSVG 278 (844)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~---A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~~g 278 (844)
..+|+.|+.+|..+||... ..+.+.. ....|+.--..-|-..+++|-..- +. .--+.+++...+.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 2221111 112333222222222222222110 00 01112223333333
Q ss_pred CC-CChhhhhH---HHHHHh-cCCChhHHHHHhccCCC-CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccc
Q 003150 279 LE-FDPQVANS---LLSMYS-KSGRLYDALKLFELMPQ-INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITF 352 (844)
Q Consensus 279 ~~-~~~~~~~~---li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 352 (844)
.. |...-++. .+.-.. ....+++-........+ ++..+|.+++.+-..+|+.+.|..++.+|.+.|+..+.+-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11 11000000 111111 12233333333333333 88999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhc----
Q 003150 353 SSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLN---- 428 (844)
Q Consensus 353 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---- 428 (844)
..++-+ .++...+..+...|...|+.|+..|+.--+-...+.|....+......-..-....+..+..+...+
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 988866 7888888999999999999999999887777766655533222211110001112223333321111
Q ss_pred -CCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 003150 429 -GISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKI 507 (844)
Q Consensus 429 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (844)
....-....+.+..-.|+......|....+- ...|.-+...++-+.+..-....+. .-+++|. +.+...
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~----~~V~a~~-----~~lrqy 389 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSG----QNVDAFG-----ALLRQY 389 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCc----chHHHHH-----HHHHHH
Confidence 1111222233333333444333333333322 2245556666666555433222111 1111111 123344
Q ss_pred HHhcCCCChH-hHHHHHHHHHH---------------cCCchHHHHHHHHHHHC----CCCC-------ChHHHHHHHHH
Q 003150 508 FKRMSEKDVV-CWNSMITRYSQ---------------NGKPEEAIDLFRQMAIE----GVKH-------DCMSLSAALSA 560 (844)
Q Consensus 508 ~~~m~~~~~~-~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~----g~~p-------~~~t~~~ll~a 560 (844)
|.+...+... .++ .-.+... .-+...+++-+..+... ...| -...-+.++..
T Consensus 390 Frr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 390 FRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 4444433211 111 1111111 11222222222221111 0111 11223445556
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCChH
Q 003150 561 CANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQE------AAWNSMIAAYGCHGHLK 634 (844)
Q Consensus 561 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~ 634 (844)
|.+.-+...+.+.-+.....-+. ..|..||+.+....+.++|..+.+++..+|. .-+..+.+.+.+.+...
T Consensus 469 l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 66665655555444333332222 5688999999999999999999999987654 46788899999999999
Q ss_pred HHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Q 003150 635 DSLALFHEMLNNKI-KPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETIN 712 (844)
Q Consensus 635 ~A~~l~~~m~~~g~-~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (844)
++..++.++.+.-. .|+ ..++--+++.....|+.+.-.+.++-+.. +|+.-+ ..++....+.++...|.+..+
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcch
Confidence 99999999987432 333 35677788888889999988888887766 565542 455667778888888888776
Q ss_pred hC--CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 713 SM--PFAPDAGVWGTLLGACRVH--GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 713 ~~--~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.. ..+|.+.....+.....++ .+++.+......+ . .|.+.|+..+|.++.+
T Consensus 621 ~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~i----------q-----~f~k~g~~~~a~di~e 675 (1088)
T KOG4318|consen 621 PEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPI----------Q-----KFEKLGSCVDAGDITE 675 (1088)
T ss_pred HHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchh----------H-----HHHhcccccchhhccc
Confidence 65 4566666666555555432 2333322221111 0 2777888888776554
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=2.3e-15 Score=171.14 Aligned_cols=328 Identities=11% Similarity=0.013 Sum_probs=255.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHh
Q 003150 418 FTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAK 497 (844)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 497 (844)
.-.++..+.+.|++++|+.+++........+....+ .+..++...|+++.|...+..+.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344566777888888888888888776544433333 33355566888888888888887764 2334566777888999
Q ss_pred cCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHH
Q 003150 498 CGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIH 574 (844)
Q Consensus 498 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 574 (844)
.|++++|...|++... | +...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998764 3 56788889999999999999999999887654 33322222234477889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHH----HHHHHHHHHHCC
Q 003150 575 SLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKD----SLALFHEMLNNK 647 (844)
Q Consensus 575 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g 647 (844)
+.+.+....++......+...+.+.|++++|...|+...+ .+...+..+...|...|++++ |+..|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 9887764334444555667888999999999999998764 357788889999999999986 8999999998
Q ss_pred CCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 003150 648 IKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWG 724 (844)
Q Consensus 648 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 724 (844)
+.|+. ..+..+...+...|++++|+..++...+ ..| ++..+..+..+|.+.|++++|.+.++++ ...|+...+.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 56765 4778888899999999999999999876 355 4677888999999999999999999888 4567654443
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 725 -TLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 725 -~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
.+..++...|+.+.|...++++++.+|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 345678889999999999999999999874
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=3e-14 Score=151.97 Aligned_cols=659 Identities=11% Similarity=0.048 Sum_probs=343.7
Q ss_pred HHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003150 67 QVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRLDL----ATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCG 142 (844)
Q Consensus 67 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 142 (844)
..+..+...|+.|+-.+|.+||.-|+..|+.+.|. .|.-|+- .+...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34555566677777777777777777777777776 6655532 12233555555555555554442
Q ss_pred CCCCcccHHHHHHHHhccCCchHHHHHHHHHH-------HhCCC--------------CCcchHHHHHHHhhccCChHHH
Q 003150 143 IRPDNHTFPSVMKACSALGNLRFGKLVHDMIW-------LMGCE--------------IDVFVGSSLVKLYTENRCIDEA 201 (844)
Q Consensus 143 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~g~~--------------~~~~~~~~li~~y~~~g~~~~A 201 (844)
.|...||..++.+|...||+..-..+-..+. ..|.. ....-....+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655433221111111 11110 0000011112222222333333
Q ss_pred HHHHhcCC----------------------------------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003150 202 RYVFDKMS----------------------------------QRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPN 247 (844)
Q Consensus 202 ~~~f~~~~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 247 (844)
.+++..+| .+++.+|.+++.+-..+|+.+.|..++.+|++.|.+.+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 33333332 15666777777777777777777777777777777777
Q ss_pred hhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhC
Q 003150 248 SVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQN 327 (844)
Q Consensus 248 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 327 (844)
..-|-.+|-+ .++......++.-|...|+.|+..|+...+-.+.+.|....+... . +....+++-+..-+-+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACR 310 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhc
Confidence 6666555544 666666777777777777777777777666665554442222111 1 1111222222222222
Q ss_pred CChhHHHHHH------------HHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCC--C-CchHHHHHHHH
Q 003150 328 GFMNEALDLF------------RKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGV--P-LDAFLKSALID 392 (844)
Q Consensus 328 g~~~~A~~~~------------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~-~~~~~~~~li~ 392 (844)
| ..|.+.+ .+..-.|+......|. +..-....|.-+...++...+..--. . .++..+..++.
T Consensus 311 g--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 311 G--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred c--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 2 1222221 2221223222221111 11111223444555555444432211 1 11222333333
Q ss_pred HhhhCCCHHHHHHHHHhCCCCChh-hHH--------------HHHHHHHhcCCchHHHHHHHHHHHcCCC----------
Q 003150 393 IYFKCRDVKMACKVFKENTAADVV-MFT--------------AMISGYVLNGISHEALEKFRWLIQEKII---------- 447 (844)
Q Consensus 393 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~--------------~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 447 (844)
- .|.+...+... .++ ..+.-+...-+...++.-+..+......
T Consensus 388 q------------yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 388 Q------------YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred H------------HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhh
Confidence 3 33332222111 111 0011111111222222222222111111
Q ss_pred -CChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHhHH
Q 003150 448 -PNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKD------VVCWN 520 (844)
Q Consensus 448 -p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~ 520 (844)
|=...-+.++..|.+.-+..++...-+.....-+. ..|..||+.+......+.|..+.++...++ ..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 11112334555555555555555433333222222 578899999999999999999999988764 44578
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCC-C-ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003150 521 SMITRYSQNGKPEEAIDLFRQMAIEGVK-H-DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK 598 (844)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 598 (844)
.+.+.+.+.+....+..+++++.+.-.. | ...++-.++...+..|..+.-+++++.+...|+..+ .-++....+
T Consensus 533 ~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLr 608 (1088)
T KOG4318|consen 533 SLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLR 608 (1088)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEee
Confidence 8888999999999999999999874322 2 256677778888888999999999999888876553 234455567
Q ss_pred cCCHHHHHHHHHhcCC---C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHH
Q 003150 599 CGNLDFARTVFDMMQR---K---QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGI 672 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 672 (844)
.++...|.++++.... + +...|-.++.- ....+++.+..+-.. +..+.+.|++.+|.
T Consensus 609 kdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k-e~td~~qk~mDls~~----------------iq~f~k~g~~~~a~ 671 (1088)
T KOG4318|consen 609 KDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK-ETTDSPQKTMDLSIP----------------IQKFEKLGSCVDAG 671 (1088)
T ss_pred ccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh-hccccHHHHHhhcch----------------hHHHHhcccccchh
Confidence 7888888887765432 1 11222222110 001122222221111 11133444444443
Q ss_pred HHHHHh-----------HhhcCCCC---------CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003150 673 HYFHCM-----------TEEYGIPA---------RMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRV 732 (844)
Q Consensus 673 ~~~~~~-----------~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 732 (844)
++.+.= .....+.| +..+..-|...|.+.|+++.|..++.++++.|+......|+..++.
T Consensus 672 di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~ 751 (1088)
T KOG4318|consen 672 DITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRR 751 (1088)
T ss_pred hccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHh
Confidence 332210 00000111 0112233777899999999999999999988999888888888877
Q ss_pred cC---CHHHHHHHHHHhhcCCC---CCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 733 HG---NVELAEVASSHLFDLDP---QNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 733 ~g---~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
+. |+-++....+++-++.| .+...|.-.+-+..+-...+.|.+.+...+++.
T Consensus 752 ~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 752 MNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred hchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 64 44556666666666554 444455555544444444556777888887764
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=1.4e-14 Score=165.46 Aligned_cols=269 Identities=13% Similarity=0.032 Sum_probs=192.3
Q ss_pred cCCHHHHHHHHHhcCC-----C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhchhchHHH
Q 003150 498 CGRLDLAYKIFKRMSE-----K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACANLHALHYG 570 (844)
Q Consensus 498 ~g~~~~A~~~~~~m~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 570 (844)
.+++++|.+.|+...+ | +...|+.+...+...|++++|+..|++..+. .|+ ..++..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 3556666666665542 1 3345666666777777777777777777654 344 34556666666777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003150 571 KEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK 647 (844)
Q Consensus 571 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 647 (844)
...++.+++.. +.+..++..+...|...|++++|...|+...+ .+...|..+...+.+.|++++|+..|++.++
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 77777776653 33566778888889999999999999987764 3567788888899999999999999999987
Q ss_pred CCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chH-------HHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003150 648 IKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEH-------YACMVDLFGRAGRLNKALETINSM-PFA 717 (844)
Q Consensus 648 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 717 (844)
..|+. ..+..+...+...|++++|++.|+...+ +.|+ ... +......+...|++++|.+++++. ...
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45654 5777788889999999999999999865 3332 111 111223344569999999999886 566
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 718 PDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 718 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|+. ..+..+...+...|++++|...+++++++.+.....+.. ..|-+|.++....++
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a--------~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQA--------ISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 764 678888999999999999999999999998875443222 234455665554443
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=4.1e-15 Score=169.04 Aligned_cols=325 Identities=10% Similarity=0.024 Sum_probs=265.6
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHH
Q 003150 450 TVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE--K-DVVCWNSMITRY 526 (844)
Q Consensus 450 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 526 (844)
......++..+.+.|+++.|..++...+.....+....+. ++......|++++|...|+++.. | +...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3345567778889999999999999988877665444444 44556679999999999999865 3 567788899999
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003150 527 SQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFA 605 (844)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 605 (844)
.+.|++++|+..+++.... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 454 556777888899999999999999988766543333 33233 347889999999
Q ss_pred HHHHHhcCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHH----HHHHHH
Q 003150 606 RTVFDMMQRK----QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEA----GIHYFH 676 (844)
Q Consensus 606 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~----a~~~~~ 676 (844)
...++.+.+. +...+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987652 3344555677889999999999999999984 5655 567778888999999986 799999
Q ss_pred HhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 677 CMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 677 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
.+.+ +.| +...+..++.++.+.|++++|...+++. ...|+ ..++..+..++...|+++.|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8866 456 5788999999999999999999999988 55666 5678888888999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 754 SGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 754 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
+..+..++.++...|++++|...+++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888888999999999999999998876543
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.3e-13 Score=135.33 Aligned_cols=449 Identities=14% Similarity=0.121 Sum_probs=278.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh--ccCCchHH-HHHHHHHHHhCCCCCcchHHHH
Q 003150 112 SLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACS--ALGNLRFG-KLVHDMIWLMGCEIDVFVGSSL 188 (844)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 188 (844)
+++=|.|+.. ..+|...++.-+|+.|.+.|+..+...-..+++..+ ...++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3445666554 456788889999999999998887776666655443 22333222 22333344433 2222222
Q ss_pred HHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHH
Q 003150 189 VKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGT 268 (844)
Q Consensus 189 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 268 (844)
+.|++.+ -+|+..| +...+|..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-.- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3455544 4555554 45678999999999999999999999999998889999999999976543 3348
Q ss_pred HHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003150 269 QVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPD 348 (844)
Q Consensus 269 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 348 (844)
.+..+|+...+.||..++|++++...+.|+++.|++. |++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcc
Confidence 8999999999999999999998888888888877643 5567777777777777
Q ss_pred ccccccchhhhhccccchh-hHHHHHHHHHh--C--CC----CchHHHHHHHHHhhhCCCHHHHHHHHHhCCC-------
Q 003150 349 EITFSSFLPSICEVASIKQ-GKEIHGYIIRN--G--VP----LDAFLKSALIDIYFKCRDVKMACKVFKENTA------- 412 (844)
Q Consensus 349 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--g--~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 412 (844)
..+|..+|..+++.++..+ +..+...+... | +. .|...+..-++.|.+..+.+-|.++-.-...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 7777777777777766543 33344443332 1 22 2334455556666677777777665533211
Q ss_pred -C---ChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccch
Q 003150 413 -A---DVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVG 488 (844)
Q Consensus 413 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 488 (844)
+ ...-|..+....|+....+.-+..|+.|+-.-+-|+..+...+++|....+.++....++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 1 123455667777888888888889999988888888999999999888888888888888888877643332222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHc-CCchHH-HHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQN-GKPEEA-IDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
--++..+++.. ..|+...-..+-...++. -++.++ ...-.+|.+..+ ....++.++-.+.+.|.
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcch
Confidence 22222222211 011111111111111110 011111 112223333333 33344455555566777
Q ss_pred hHHHHHHHHHHHHhC-CCCchhHHH---HHHHHHHhcCCHHHHHHHHHhcCCCChH
Q 003150 567 LHYGKEIHSLMIKDS-CRSDNIAES---VLIDLYAKCGNLDFARTVFDMMQRKQEA 618 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g-~~~~~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~~~ 618 (844)
.++|.+++..+.+.+ -.|-....| -+++.-.+..+...|..+++-+...|..
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 777777777775443 223333344 4455556667777777777777654433
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.4e-13 Score=154.73 Aligned_cols=436 Identities=10% Similarity=0.058 Sum_probs=284.3
Q ss_pred HHhcCCChhHHHHHhccCCCCCcc---chHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccc---hhhhhccccc
Q 003150 292 MYSKSGRLYDALKLFELMPQINLV---TWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSF---LPSICEVASI 365 (844)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~ 365 (844)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 456889999999999888763333 23377888888899999999988876 3443333333 3355666888
Q ss_pred hhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHh--cCCchHHHHHHHHHHH
Q 003150 366 KQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVL--NGISHEALEKFRWLIQ 443 (844)
Q Consensus 366 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 443 (844)
+.|.++++.+++.. +.+..++..++..|...++.++|...+++..+.+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 89999998888875 33466667778888888888888888888766443322224444444 4555568888888887
Q ss_pred cCCCCC-hhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHH
Q 003150 444 EKIIPN-TVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSM 522 (844)
Q Consensus 444 ~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 522 (844)
.. |+ ...+.....+..+.|-...|.++...- |+.++-...... +.+.|-+..+.-..++.
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------ 258 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------ 258 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc------
Confidence 63 44 444555666666666666555544331 111111110000 01111111111000000
Q ss_pred HHHHHHcCC---chHHHHHHHHHHHC-CCCCChH-----HHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003150 523 ITRYSQNGK---PEEAIDLFRQMAIE-GVKHDCM-----SLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLI 593 (844)
Q Consensus 523 i~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~~-----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 593 (844)
....+ .+.|+.-++.+... +-.|... ...--+-+....++..++++.++.+...|.+....+..++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00111 23344444444431 2223221 12234456677778888888888888777665556777888
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCCC
Q 003150 594 DLYAKCGNLDFARTVFDMMQRK---------QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-------------IKPD 651 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd 651 (844)
++|...+.+++|..+|.++... +......|.-+|...+++++|..+++++.+.. ..||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 8888888888888888876431 23334678888888999999999999888721 1233
Q ss_pred HHHH-HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHH
Q 003150 652 HVTF-LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLG 728 (844)
Q Consensus 652 ~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~ 728 (844)
...+ ..+...+.-.|++.+|++.++.+... -+-|......+.+++...|++.+|++.++.. ...|+. .+...+..
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 3333 33455678889999999999999652 3447888899999999999999999999776 556764 66667777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 729 ACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 729 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
+....|++++|+.+.+++++..|++++.-
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 78888999999999999999999988553
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=3.1e-13 Score=153.77 Aligned_cols=432 Identities=9% Similarity=0.024 Sum_probs=266.0
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCc--cccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCH
Q 003150 323 GHVQNGFMNEALDLFRKMILSGVKPDE--ITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDV 400 (844)
Q Consensus 323 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 400 (844)
...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++... ..-+.......++...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCH
Confidence 356888888888888888764 3443 122 55666666677777777776665 11122233333345566666777
Q ss_pred HHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHH
Q 003150 401 KMACKVFKENTA---ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYIL 477 (844)
Q Consensus 401 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 477 (844)
++|.++|+++.+ .+...+..++..+...++.++|++.++++... .|+...+..+.......++...+.+.++.++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777766443 23445556666666777777777777666554 3444444222222222233323444444444
Q ss_pred HhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCC-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHH
Q 003150 478 KNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEK-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSA 556 (844)
Q Consensus 478 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 556 (844)
+.. +.+...+..+.....+.|-...|.++..+-+.- +...+.- + +.+.|.+.. ..+..|+.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~-l-------~~~~~a~~v----r~a~~~~~----- 258 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ-L-------ERDAAAEQV----RMAVLPTR----- 258 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH-H-------HHHHHHHHH----hhcccccc-----
Confidence 432 222333333444444444444444443332210 0000000 0 001111111 00111100
Q ss_pred HHHHHhchhc---hHHHHHHHHHHHHh-CCCCc-hhH-HH---HHHHHHHhcCCHHHHHHHHHhcCCCC----hHHHHHH
Q 003150 557 ALSACANLHA---LHYGKEIHSLMIKD-SCRSD-NIA-ES---VLIDLYAKCGNLDFARTVFDMMQRKQ----EAAWNSM 623 (844)
Q Consensus 557 ll~a~~~~~~---~~~a~~~~~~~~~~-g~~~~-~~~-~~---~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~l 623 (844)
....+ .+.+..-++.+... +-.|. ... .. -.+-++.+.|++.++++.|+.+.... ..+-.++
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 01112 23444444444432 22232 111 22 34456678899999999999998532 3456678
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcC----------CCCC-
Q 003150 624 IAAYGCHGHLKDSLALFHEMLNNK-----IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYG----------IPAR- 687 (844)
Q Consensus 624 i~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~- 687 (844)
.++|...+++++|+.+|+++.... ..++......|.-++...+++++|..+++.+.+... -.|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 899999999999999999997643 122333457788899999999999999999987311 0233
Q ss_pred --chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 688 --MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 688 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
...+..++..+...|++.+|++.++++ ...| |..++..+...+...|....|+..++.+..++|++......++..
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 334556788899999999999999999 3344 578899999999999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHc
Q 003150 764 HADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 764 y~~~g~~~~a~~~~~~m~~~ 783 (844)
+...|+|++|.++.+...+.
T Consensus 494 al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhh
Confidence 99999999998888666543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1e-12 Score=129.20 Aligned_cols=331 Identities=14% Similarity=0.129 Sum_probs=207.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhh--ccCCchHH-HHHHHHHHHhcCCCChhhhhHHH
Q 003150 214 VLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCA--VEAMTDFG-TQVHGVVVSVGLEFDPQVANSLL 290 (844)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li 290 (844)
++-|.|+. ....|.+.++.-+|+.|++.|+..+...-..+++..+ ...++--+ .+-|-.|.+.|-..+ .+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-~s----- 189 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-SS----- 189 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-cc-----
Confidence 34455554 3567888888889999998887777665555554433 22222221 222333333332221 11
Q ss_pred HHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHH
Q 003150 291 SMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKE 370 (844)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 370 (844)
.+.|++.+ -+|+ ...+...+|.+||.|+++--..+.|.+++++-.....+.+..+||.+|.+.. +..+++
T Consensus 190 ---WK~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~ 259 (625)
T KOG4422|consen 190 ---WKSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKK 259 (625)
T ss_pred ---cccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHH
Confidence 24555544 3444 4445667999999999999999999999999999989999999999997754 334489
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh----C----CCCChhhHHHHHHHHHhcCCchH-HHHHHHHH
Q 003150 371 IHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE----N----TAADVVMFTAMISGYVLNGISHE-ALEKFRWL 441 (844)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m 441 (844)
+..+|+...+.||..++|+++.+..+.|+++.|++.+-+ | .+|...+|..+|..+++.++..+ |..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 999999999999999999999999999999887754322 1 23444555555555555444422 22222222
Q ss_pred HHc----CCCC----ChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003150 442 IQE----KIIP----NTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE 513 (844)
Q Consensus 442 ~~~----g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (844)
... .++| |...|.+.+..|.+..+.+.|.+++....... . +...|.. +
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~----- 395 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------Q----- 395 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------H-----
Confidence 221 1111 22334444445555555555554443322110 0 0000000 0
Q ss_pred CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCc
Q 003150 514 KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSD 585 (844)
Q Consensus 514 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 585 (844)
....-|..+....++....+.-+..++.|+-.-+-|+..+...+++|....+.++...+++..++..|....
T Consensus 396 ~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 396 HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 112345556667777777888888888888877788888888888888888888888888888777664433
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.4e-10 Score=120.39 Aligned_cols=490 Identities=12% Similarity=0.061 Sum_probs=334.0
Q ss_pred HhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHH
Q 003150 257 VCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEA 333 (844)
Q Consensus 257 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 333 (844)
+.....+.+.|+-++...++.-. .. .-|.-+|++..-++.|.++++...+ .+...|-+--..--.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAveccp-~s----~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECCP-QS----MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhcc-ch----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 33344555556666655554321 11 2233445555666666666665543 3445555544444456666666
Q ss_pred HHHHHH----HHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCc--hHHHHHHHHHhhhCCCHHHHHHHH
Q 003150 334 LDLFRK----MILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLD--AFLKSALIDIYFKCRDVKMACKVF 407 (844)
Q Consensus 334 ~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 407 (844)
..+..+ +...|+..+...|..=..+|-..|..-.+..|...++.-|+... ..+|+.-.+.+.+.+.++-|+.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 555543 33445655555555555555555555555555555555554322 334555555555555555555555
Q ss_pred HhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC
Q 003150 408 KENTA---ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGK 484 (844)
Q Consensus 408 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 484 (844)
....+ .+...|......--..|..++-..+|++.... -. -.
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-----------------------------------~p-ka 583 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-----------------------------------CP-KA 583 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------------------------------CC-cc
Confidence 44222 23344544444444445555555555554443 11 11
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003150 485 CHVGSAITDMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSAC 561 (844)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 561 (844)
...+-.....+-+.|++..|+.+++..-+ .+...|-+-+.....+.++++|..+|.+.... .|+...|.--+..-
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 11222233445557888888877776654 25567877788888888889999988888764 46776666666666
Q ss_pred hchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHH
Q 003150 562 ANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNSMIAAYGCHGHLKDSLA 638 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 638 (844)
--.++.++|.+++++.++. ++.-...|.-+...+...++++.|.+.|..-.+ | .+..|-.|...--+.|..-+|..
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 6678888999988888776 344456778888999999999999999987665 4 45688888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 003150 639 LFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAP 718 (844)
Q Consensus 639 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 718 (844)
+|++..-.+ +-|...|...+..-.+.|+.++|..+..++.++ .+.+...|..-|.+..+.++..++.+.+++. ..
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EH 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cC
Confidence 999988753 334568899999999999999999999888774 5667888999999999999999999999887 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCeeEEEEC
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGYSWIELN 797 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~ 797 (844)
|+.+.-+....+....+++.|...++++++.+|++..+|..+-..+...|.-++-.++++...... +.-|..|+-+.
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 666666777778888899999999999999999999999999999999999999999998776543 45577786543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4.3e-11 Score=129.28 Aligned_cols=612 Identities=12% Similarity=0.100 Sum_probs=320.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCC-CCCcchHHHHHHHhhccCChHHHHHH
Q 003150 126 GLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGC-EIDVFVGSSLVKLYTENRCIDEARYV 204 (844)
Q Consensus 126 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~ 204 (844)
|+.++|.+++.+.++.. +-+...|.+|-..+-..|+...+...+- +...+ +.|...|..+-....+.|.++.|+-.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 56666666666555532 2233455555555555555555444322 22221 33344555555555555566666666
Q ss_pred HhcCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCC
Q 003150 205 FDKMSQRDCVLWNV---MLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEF 281 (844)
Q Consensus 205 f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 281 (844)
|.+..+.+..-|-. -...|-+.|+...|.+.|.++.+...+.|-.-+..++
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i-------------------------- 283 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI-------------------------- 283 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH--------------------------
Confidence 65555433222222 2334555566666666555555432211111111111
Q ss_pred ChhhhhHHHHHHhcCCChhHHHHHhccCCC-----CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCC----------
Q 003150 282 DPQVANSLLSMYSKSGRLYDALKLFELMPQ-----INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVK---------- 346 (844)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 346 (844)
-..+..|...++-+.|.+.++.... -+...+|.++..+.+...++.|......+......
T Consensus 284 -----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 284 -----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred -----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1122333334444555554444332 12234555566666666666666655555541111
Q ss_pred ------------CCcccccc----chhhhhccccchhhHHHHHHHHHhCC--CCchHHHHHHHHHhhhCCCHHHHHHHHH
Q 003150 347 ------------PDEITFSS----FLPSICEVASIKQGKEIHGYIIRNGV--PLDAFLKSALIDIYFKCRDVKMACKVFK 408 (844)
Q Consensus 347 ------------p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 408 (844)
|+...|.. +.-++.+....+....+.....+..+ ..++..|.-+.++|...|.+.+|.++|.
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111211 11223344555555556666666653 3345567777777777777777777777
Q ss_pred hCCC----CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhh-HHHHHHHHhcccchHHHHHHHHHHH------
Q 003150 409 ENTA----ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVT-LSSILPACADLAALKLGKELHCYIL------ 477 (844)
Q Consensus 409 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~------ 477 (844)
.+.. .+...|--+..+|...|.+++|++.|...+.. .|+..- -.++-..+.+.|+.++|.+.+..+.
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 6544 24567777777777777777777777777654 343322 2233333455667777766666533
Q ss_pred --HhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC--------------------------CChHhHHHHHHHHHHc
Q 003150 478 --KNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE--------------------------KDVVCWNSMITRYSQN 529 (844)
Q Consensus 478 --~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------------~~~~~~~~li~~~~~~ 529 (844)
..+..|+..+.--..+.|.+.|+.++-..+-..|.. .+......++.+-.+.
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~ 596 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKA 596 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhcc
Confidence 223334444444445566666666553333222211 0111222233333333
Q ss_pred CCchHHHH------HHHHHHHCCCCCCh--HHHHHHHHHHhchhchHHHHHHHHHHHHhC-C-CCch---hHHHHHHHHH
Q 003150 530 GKPEEAID------LFRQMAIEGVKHDC--MSLSAALSACANLHALHYGKEIHSLMIKDS-C-RSDN---IAESVLIDLY 596 (844)
Q Consensus 530 g~~~~A~~------~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~-~~~~---~~~~~li~~y 596 (844)
++...... .+.--...|+..+. .-+.-++.+.++.+.+++|..+...+.... + .++. ..-...+.+.
T Consensus 597 ~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s 676 (895)
T KOG2076|consen 597 TDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKAS 676 (895)
T ss_pred CchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 32111111 11111222333322 234556667778888888888877776542 1 2222 2334455566
Q ss_pred HhcCCHHHHHHHHHhcCCC-----C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhhhC
Q 003150 597 AKCGNLDFARTVFDMMQRK-----Q---EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS--ACGHAG 666 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~--a~~~~g 666 (844)
...+++..|.+.+..|... + ...||...+...+.|+-.--.+++..... ..|+......++. -....+
T Consensus 677 ~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 677 LYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNA 754 (895)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhcc
Confidence 6778888888877776543 2 34677666666666654444444444433 2333322222222 234567
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHh----------cCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHH
Q 003150 667 QVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGR----------AGRLNKALETINSM-PF-AP--DAGVWGTLLGACR 731 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----------~g~~~~A~~~~~~~-~~-~p--~~~~~~~ll~~~~ 731 (844)
.+.-|+..+-.+-. ..|+ |-+--||+-++.. .-.+-.++.++++. .. .+ ...+...+..+|.
T Consensus 755 s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 755 SFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred chHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 77788877666543 4554 5444455444431 12244556666554 11 12 2366777899999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCc------------hHHHHHHHHHhcCCcchHHHHHH
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSG------------YYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~------------~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.-|=+-.|...|++++++.|.+.. +-..|.-+|...|+.+-|..+.+
T Consensus 832 ~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 999999999999999999764322 34567789999999999988775
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.7e-13 Score=132.09 Aligned_cols=272 Identities=15% Similarity=0.139 Sum_probs=203.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHhHHHH-----HHHHHHcC-CchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhch
Q 003150 494 MYAKCGRLDLAYKIFKRMSEKDVVCWNSM-----ITRYSQNG-KPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHAL 567 (844)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 567 (844)
-|.+.|+++.|.+++.-..++|..+-++- .--|.+.| ++..|.+.-+...... +-|......--......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 36788999999988887776654332221 11223333 4555555544443221 12222222222223456899
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003150 568 HYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ---RKQEAAWNSMIAAYGCHGHLKDSLALFHEML 644 (844)
Q Consensus 568 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 644 (844)
+.|.+.+.+.....-......||. .-.+.+.|++++|++.|-.+. ..+....-.+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999887765444455543 345678899999999997665 4678888889999999999999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 003150 645 NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGV 722 (844)
Q Consensus 645 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 722 (844)
.. ++.|...+..|...|-+.|+-.+|.+++-.- |..-| +.++...|..-|....-+++|+.+|++. -+.|+.+-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 73 3445567888888999999999999876544 44555 8999999999999999999999999998 56899999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcc
Q 003150 723 WGTLLGACR-VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWG 771 (844)
Q Consensus 723 ~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 771 (844)
|..++..|. +.||++.|...++......|.+......|..++...|..+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 999998875 5799999999999999999999999999999988877544
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=3.4e-10 Score=122.54 Aligned_cols=312 Identities=13% Similarity=0.167 Sum_probs=217.8
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccC---CCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 003150 60 SVLQQGRQVHSQFILNGISDNAALGAKILGMYVLCGGFIDAGNMFPR---LDLATSLPWNRMIRVFAKMGLFRFALLFYF 136 (844)
Q Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 136 (844)
|+++.|..|...+++... .++..|-.|-..|-+.|+.+.+...+-- ..+.|..-|..+-.-..+.|++..|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 899999999999999864 5667899999999999999988876643 244566779999889999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH----HHHhhccCChHHHHHHHhcCCC--
Q 003150 137 KMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSL----VKLYTENRCIDEARYVFDKMSQ-- 210 (844)
Q Consensus 137 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~f~~~~~-- 210 (844)
+..+.. +++...+---...|-+.|+...|...+..+.....+.|..-.-.+ ++.|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 988764 233333333455667889999999988888876533333323333 4556667777889888887664
Q ss_pred C---CcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhh----------------------HH----HHHHHhhcc
Q 003150 211 R---DCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVT----------------------FA----CILSVCAVE 261 (844)
Q Consensus 211 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------------~~----~ll~~~~~~ 261 (844)
. +...+|.++..|.+...++.|......+.....++|..- |. -+.-++.+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 334688999999999999999998888876322222211 11 122233455
Q ss_pred CCchHHHHHHHHHHHhcC--CCChhhhhHHHHHHhcCCChhHHHHHhccCCC----CCccchHHHHHHHHhCCChhHHHH
Q 003150 262 AMTDFGTQVHGVVVSVGL--EFDPQVANSLLSMYSKSGRLYDALKLFELMPQ----INLVTWNGMIAGHVQNGFMNEALD 335 (844)
Q Consensus 262 ~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 335 (844)
...+....+...+....+ .-++..+.-+.++|...|.+.+|.++|..+.. .+...|--+..+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 666666677777777663 34567778888888888888888888887764 355678888888888888888888
Q ss_pred HHHHHHHcCCCCCcc-ccccchhhhhccccchhhHHHHHHH
Q 003150 336 LFRKMILSGVKPDEI-TFSSFLPSICEVASIKQGKEIHGYI 375 (844)
Q Consensus 336 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 375 (844)
.|+..... .|+.. .-.+|-..+.+.|+.++|.++++.+
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 88887764 33322 2223333444556666666666553
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1.3e-08 Score=106.19 Aligned_cols=432 Identities=13% Similarity=0.095 Sum_probs=321.5
Q ss_pred HHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh---C
Q 003150 334 LDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE---N 410 (844)
Q Consensus 334 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~ 410 (844)
.+++++..+. .|+.+. |-++.....+.+.|+-++...++. ++.+...+.+ |.+...++.|.+++++ .
T Consensus 366 ~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 3445544443 344332 223344445555577777766654 3444444444 4455667778777765 4
Q ss_pred CCCChhhHHHHHHHHHhcCCchHHHHHHHH----HHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC--
Q 003150 411 TAADVVMFTAMISGYVLNGISHEALEKFRW----LIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGK-- 484 (844)
Q Consensus 411 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-- 484 (844)
.+.+...|-+-...--.+|+.+...+++.+ +...|+..+...|..=-.+|-..|..-.+..+....+..|++..
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 445777787766666778888887777655 34468888888888888889888999999999999888888643
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003150 485 CHVGSAITDMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSAC 561 (844)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 561 (844)
..+++.-.+.|.+.+.++-|..+|....+ .+...|...+..--..|..++-..+|++....- +-...-+.......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 35777778889999999999999987765 366778888877788899999999999988753 33445555556666
Q ss_pred hchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHH
Q 003150 562 ANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLAL 639 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l 639 (844)
-..|++..|+.++..+...... +..++-+-+..-.....++.|..+|.+... +....|.--+....-.+..++|+++
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 7789999999999998877533 777888888899999999999999987764 6677888878888888999999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 003150 640 FHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PF 716 (844)
Q Consensus 640 ~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 716 (844)
+++.++ .-|+.. .|..+...+.+.++++.|.+.|..=.+ ..+-.+..|-.|.++-.+.|.+.+|..++++. ..
T Consensus 674 lEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 674 LEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 999988 577775 666666778888999999988876544 23335777888889999999999999999988 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC------------------------------chHHHHHHHHHh
Q 003150 717 APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS------------------------------GYYVLLSNIHAD 766 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------------------------------~~~~~l~~~y~~ 766 (844)
..+...|-..+..-.++|+.++|....-++++--|++. ......+.++..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 44578999999999999999999988888877666543 334555666777
Q ss_pred cCCcchHHHHHHHHH
Q 003150 767 AGQWGNVNKIRRLMK 781 (844)
Q Consensus 767 ~g~~~~a~~~~~~m~ 781 (844)
..+.+.|.+-|....
T Consensus 830 e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 830 EKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666443
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2.6e-14 Score=146.43 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=112.1
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHH-HHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003150 524 TRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALS-ACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNL 602 (844)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 602 (844)
..+.+.|++++|++++++.......|+...|-.++. .+...++.+.|.+.++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 334445555555555543332222233333333222 233345555555555555544322 34455566666 678888
Q ss_pred HHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 603 DFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 603 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
++|.+++...-+ ++...+..++..+...|+++++..++++..... ..++...|..+...+.+.|+.++|++.++...
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888876543 466778888888999999999999999987643 23455677777788899999999999999997
Q ss_pred hhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 680 EEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 680 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
+ ..| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.+.|...++++++.+|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 7 356 5788889999999999999988888776 224556789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 757 YVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 757 ~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
...++.++...|+.++|.+++++.-
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999988653
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.9e-11 Score=115.24 Aligned_cols=314 Identities=15% Similarity=0.204 Sum_probs=179.0
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHH
Q 003150 426 VLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAY 505 (844)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 505 (844)
.-+.+.++|.++|-+|.+. |..||..=+ +|.+.|-..|.+|.|+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~----d~~t~e~~l--------------------------------tLGnLfRsRGEvDRAI 89 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE----DPETFEAHL--------------------------------TLGNLFRSRGEVDRAI 89 (389)
T ss_pred HhhcCcchHHHHHHHHHhc----CchhhHHHH--------------------------------HHHHHHHhcchHHHHH
Confidence 3457889999999999874 444443222 3444555555555555
Q ss_pred HHHHhcCC-CCh------HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHH
Q 003150 506 KIFKRMSE-KDV------VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMI 578 (844)
Q Consensus 506 ~~~~~m~~-~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 578 (844)
++-+.+.+ ||. ...-.|..-|...|-++.|..+|..+.+.|. --......++..|-...+|++|.+.-..+.
T Consensus 90 RiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 90 RIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555443 221 2233455556666666666666666665431 122233344444444444444444444444
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003150 579 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAI 658 (844)
Q Consensus 579 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 658 (844)
+.+-.+... -+... |--+...+....+.+.|..++.+..+ ..|+.+--+.+
T Consensus 169 k~~~q~~~~---eIAqf------------------------yCELAq~~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~ 219 (389)
T COG2956 169 KLGGQTYRV---EIAQF------------------------YCELAQQALASSDVDRARELLKKALQ--ADKKCVRASII 219 (389)
T ss_pred HcCCccchh---HHHHH------------------------HHHHHHHHhhhhhHHHHHHHHHHHHh--hCccceehhhh
Confidence 332221111 01111 22233344445556666666666665 34544433332
Q ss_pred H-HHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 003150 659 I-SACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNV 736 (844)
Q Consensus 659 l-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 736 (844)
+ ......|+++.|.+.++.+.+. +..--+++...|..+|...|+.++...++.++ ...+....-..+...-....-.
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI 298 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh
Confidence 2 3455666666666666666552 22222455566666666667776666666655 3344444444444443444445
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHh--cCCcchHHHHHHHHHHcCCccCCCeeEEEECCEEEEEEeC
Q 003150 737 ELAEVASSHLFDLDPQNSGYYVLLSNIHAD--AGQWGNVNKIRRLMKERGVQKIPGYSWIELNNITHLFVAA 806 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~ 806 (844)
+.|...+.+-+...|+--+.|.++..-... .|+|.+...+.+.|....++..|.|.+-+++.+.|.|.-.
T Consensus 299 ~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~ 370 (389)
T COG2956 299 DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWH 370 (389)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeee
Confidence 666666667777777777776666544433 4678888999999998889999999999999999999854
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.7e-10 Score=114.28 Aligned_cols=436 Identities=12% Similarity=0.122 Sum_probs=256.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCccccc-cchhhhhccccchhhHHHHHHHHHhCCCCc----hHHHHHHHHHh
Q 003150 320 MIAGHVQNGFMNEALDLFRKMILSGVKPDEITFS-SFLPSICEVASIKQGKEIHGYIIRNGVPLD----AFLKSALIDIY 394 (844)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~ 394 (844)
|.+-|..+....+|+..|+-..+...-|+.-..- .+-..+.+...+.+|.+.+...+..-...+ ..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3345555666777888887777766666654432 233344555666666666666555422211 12333334445
Q ss_pred hhCCCHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHH
Q 003150 395 FKCRDVKMACKVFKENTA--ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKEL 472 (844)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 472 (844)
.+.|.++.|+..|+...+ ||..+--.|+-++..-|+.++..+.|.+|+.-...||..-|..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~----------------- 349 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK----------------- 349 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-----------------
Confidence 566666666666665322 4443333333344445566666666666655433333222200
Q ss_pred HHHHHHhCCCCCccchH-----HHHHHHHhcCC--HHHHH----HHHHhcCCCChH---hHH------------------
Q 003150 473 HCYILKNGLDGKCHVGS-----AITDMYAKCGR--LDLAY----KIFKRMSEKDVV---CWN------------------ 520 (844)
Q Consensus 473 ~~~~~~~g~~~~~~~~~-----~li~~~~~~g~--~~~A~----~~~~~m~~~~~~---~~~------------------ 520 (844)
..-.|+....| -.+.-.-+... .+++. ++..-...|+-. -|.
T Consensus 350 ------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei 423 (840)
T KOG2003|consen 350 ------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEI 423 (840)
T ss_pred ------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhh
Confidence 00000000000 00111111111 11111 111111112110 010
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHH--HHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003150 521 SMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAA--LSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK 598 (844)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 598 (844)
.-..-|.++|+++.|+++++-+..+.-+.-...-+.+ +.-.....++..|.++-+...... ..+......-.+.-..
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1123578999999999999988776544333222222 222222346667777666655331 1111111112223345
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHH
Q 003150 599 CGNLDFARTVFDMMQRKQEAAWNSMI---AAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
.|++++|.+.+++....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 69999999999999988766544443 3477889999999999887652 3344567777888899999999999998
Q ss_pred HHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCC
Q 003150 676 HCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINS-MPFAPD-AGVWGTLLGACRV-HGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 676 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 752 (844)
-.... -++.++...+-|.++|-+.|+...|++..-. ...-|. ..+. ..+.+|.. ..=.+.|+..++++--+.|+
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i-ewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI-EWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH-HHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 77644 3444799999999999999999999987543 333343 3222 23445444 44568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 753 NSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 753 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.......++.++.+.|++..|..+++....+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999899999999999999999999988754
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.2e-09 Score=109.40 Aligned_cols=478 Identities=12% Similarity=0.127 Sum_probs=339.5
Q ss_pred CCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHH
Q 003150 296 SGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIH 372 (844)
Q Consensus 296 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 372 (844)
.+++..|+.+|++... +++..|--.+..-.++..+..|..+++.....=...|..-| ..+..--..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 4566778888887764 56667777778888888888888888887654222232221 1222233568888999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh--CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh
Q 003150 373 GYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE--NTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNT 450 (844)
Q Consensus 373 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (844)
+.-.+ ..|+...|++.|+.-.+-..++.|+.++++ +..|++.+|--...-=-++|+...|..+|....+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 88765 478999999999999999999999999998 55689988888888888889988888888877664 1233
Q ss_pred hhHHHHHHHHh----cccchHHHHHHHHHHHHhCCCCC-ccchHHHHHHHHhcCCHHHHHHH--------HHhcCCC---
Q 003150 451 VTLSSILPACA----DLAALKLGKELHCYILKNGLDGK-CHVGSAITDMYAKCGRLDLAYKI--------FKRMSEK--- 514 (844)
Q Consensus 451 ~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~--- 514 (844)
..-..++.+++ +...++.+.-++..++..-.... ...|..+...=-+.|+.....+. ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 33334444443 45678889999988887643322 23444444444445554333322 2223232
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChH-------HHHHH---HHHHhchhchHHHHHHHHHHHHhCCCC
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCM-------SLSAA---LSACANLHALHYGKEIHSLMIKDSCRS 584 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~l---l~a~~~~~~~~~a~~~~~~~~~~g~~~ 584 (844)
|-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+ +-.-....+.+.+.++++..++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 5677877888888889999999999998864 455221 12111 1122346789999999999988 4566
Q ss_pred chhHHHHHHHHHH----hcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 003150 585 DNIAESVLIDLYA----KCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLA 657 (844)
Q Consensus 585 ~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ 657 (844)
..+++.-+--+|+ ++.++..|.+++..... |...++..-|..-.+.+.++.+..+|++.++ ..|.. .+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 6777777766665 78999999999987654 6777888888888999999999999999999 56655 68888
Q ss_pred HHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----
Q 003150 658 IISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACR----- 731 (844)
Q Consensus 658 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~----- 731 (844)
....-...|+.|.|..+|+.+.+...+.--...|.+.|+.-...|.+++|..+++++ ...+-..+|-+...--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 888788899999999999999875444334556888899999999999999999998 44455568887766543
Q ss_pred hcC-----------CHHHHHHHHHHhhc----CCCCCCch--HHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 732 VHG-----------NVELAEVASSHLFD----LDPQNSGY--YVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 732 ~~g-----------~~~~a~~~~~~~~~----~~p~~~~~--~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
..+ +...|..+++++.. ..|...-. .-.+-+.-...|.-.+...+-+.|-+
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 66788888888865 34433222 22333455566888888888877743
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=8.4e-11 Score=118.12 Aligned_cols=187 Identities=13% Similarity=0.197 Sum_probs=144.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGH 664 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~ 664 (844)
|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|++.+. +.|+.+ .|..+--+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 33344556666666666666665543 3455666666666667788888888888888 677764 67767667778
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcC
Q 003150 665 AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD---------AGVWGTLLGACRVHG 734 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g 734 (844)
.+.++++...|+..+++ ++..++.|+-...++...+++++|.+.++.. .+.|+ +.+..+++-.- -.+
T Consensus 441 ~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhh
Confidence 88999999999999884 5667889999999999999999999999887 44444 34444444433 338
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 735 NVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 735 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
|+..|+.+++++++++|...-+|..|+.+-.+.|+.++|.++|+.-
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999854
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-10 Score=115.42 Aligned_cols=358 Identities=12% Similarity=0.081 Sum_probs=230.4
Q ss_pred CCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH--HHH
Q 003150 379 GVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTL--SSI 456 (844)
Q Consensus 379 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l 456 (844)
+...|.+.+-...-.+-+.|..+.|+..|......-+..|.+.+....-..+.+.+..+ . .|...|...+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHH
Confidence 33445555444455566778888888888876654455555544332212222221111 1 1122221111 122
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHH
Q 003150 457 LPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAI 536 (844)
Q Consensus 457 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 536 (844)
..++......+++.+-.......|++.+...-+-...+.-...++++|+.+|+++.+.|+.-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------ 295 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------ 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------------------
Confidence 33444444555555555555555555555444444444445555555555555554321100
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 003150 537 DLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRK- 615 (844)
Q Consensus 537 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~- 615 (844)
--|..+|+.+|-.-.....+. ++.+-.-.--+--+.+...+.+-|+-.++.+.|...|++..+-
T Consensus 296 -----------l~dmdlySN~LYv~~~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 296 -----------LDDMDLYSNVLYVKNDKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred -----------chhHHHHhHHHHHHhhhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 012233333332221111110 0000000000223445566778888889999999999988763
Q ss_pred --ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHH
Q 003150 616 --QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHY 691 (844)
Q Consensus 616 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 691 (844)
-...|+-|..-|....+...|++-+++.++ +.| |...|..|..+|.-.+...-|+-+|++..+ ++| |...|
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw 435 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLW 435 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHH
Confidence 456899999999999999999999999998 555 557999999999999999999999999855 677 78999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------CCCCCCchHHHHHH
Q 003150 692 ACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD-------LDPQNSGYYVLLSN 762 (844)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~ 762 (844)
.+|+++|.+.+++++|++-+++. ....+..++..|...+.+.++.++|...+++-++ .+|+...+-..|++
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 99999999999999999999998 2234458888999999999999999999999887 45656667778999
Q ss_pred HHHhcCCcchHHHHHHH
Q 003150 763 IHADAGQWGNVNKIRRL 779 (844)
Q Consensus 763 ~y~~~g~~~~a~~~~~~ 779 (844)
-+.+.++|++|..+-..
T Consensus 516 ~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHhhcchHHHHHHHHH
Confidence 99999999999876553
No 42
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2e-07 Score=101.74 Aligned_cols=649 Identities=14% Similarity=0.110 Sum_probs=366.5
Q ss_pred HHHhCCCCChhhHhHHHHHHHhcCChhhHhhhccCCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCccc
Q 003150 72 FILNGISDNAALGAKILGMYVLCGGFIDAGNMFPRLDL--ATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHT 149 (844)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 149 (844)
..+.|..||- --+++...+ -..+.+.++...+++ +...-.+.+...+...+....+..++-...+. ..|+...
T Consensus 504 ~kKvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~ 578 (1666)
T KOG0985|consen 504 AKKVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGH 578 (1666)
T ss_pred HHHcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhh
Confidence 3466777773 334555444 566777776666643 33445677777777777777776666555543 2344332
Q ss_pred HHH-HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCC--CCcchHHH----HHHH
Q 003150 150 FPS-VMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQ--RDCVLWNV----MLNG 222 (844)
Q Consensus 150 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~----li~~ 222 (844)
..+ +|.. .+-.|.++.+.+.-.++ -+.+-+..+...|.+.|-...|++.+..+.. +.++.-+. -+.+
T Consensus 579 LQTrLLE~-----NL~~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~ 652 (1666)
T KOG0985|consen 579 LQTRLLEM-----NLVHAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN 652 (1666)
T ss_pred HHHHHHHH-----HhccchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH
Confidence 222 2221 11223444444444332 2233477788889999999999988887653 22221111 1234
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHh-----------cCCCChhhhhHHHH
Q 003150 223 YVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSV-----------GLEFDPQVANSLLS 291 (844)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~ 291 (844)
|.-.-.++++++.++.|...+++.|..+...+-.-|...--.+...++|+..... .+.-|+.+.-..|.
T Consensus 653 yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIq 732 (1666)
T KOG0985|consen 653 YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQ 732 (1666)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHH
Confidence 5555578899999999999988888877766665555443334444444444321 34567777888999
Q ss_pred HHhcCCChhHHHHHhccCCC-------------------------------CCccch------HHHHHHHHh--------
Q 003150 292 MYSKSGRLYDALKLFELMPQ-------------------------------INLVTW------NGMIAGHVQ-------- 326 (844)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~-------------------------------~~~~~~------~~li~~~~~-------- 326 (844)
+.++.|++.+.+++.++-.- +|.+.| --.|..|++
T Consensus 733 AA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p 812 (1666)
T KOG0985|consen 733 AACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTP 812 (1666)
T ss_pred HHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccc
Confidence 99999999988887654310 011111 011222222
Q ss_pred --------------------------------------CCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchh-
Q 003150 327 --------------------------------------NGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQ- 367 (844)
Q Consensus 327 --------------------------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~- 367 (844)
.++..--+..++.....|.. |..|++.+.+.+...++-.+
T Consensus 813 ~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 813 QVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH
Confidence 22222222334444445543 66777777766654432111
Q ss_pred h---------HHHHHHHHH-----------hC--------CCCchHHHHHHHHHhhhCCCHHHH-----------HHHHH
Q 003150 368 G---------KEIHGYIIR-----------NG--------VPLDAFLKSALIDIYFKCRDVKMA-----------CKVFK 408 (844)
Q Consensus 368 a---------~~~~~~~~~-----------~g--------~~~~~~~~~~li~~~~~~g~~~~A-----------~~~~~ 408 (844)
- +.+=....+ .| +...-+.|..+.+...+..+.+-= +.+.+
T Consensus 892 fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiD 971 (1666)
T KOG0985|consen 892 FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLID 971 (1666)
T ss_pred hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHH
Confidence 1 111111111 11 011122333444444444443321 12333
Q ss_pred hC-----CC-CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCC--CChhhHHHHHHHHhcccchHHHHHHHHHHHHhC
Q 003150 409 EN-----TA-ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKII--PNTVTLSSILPACADLAALKLGKELHCYILKNG 480 (844)
Q Consensus 409 ~~-----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 480 (844)
.. ++ .|+..-+.-+.++...+-+.+-++++++..-..-. -+...-+.++-... ..+..+..+..+.+-...
T Consensus 972 qVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD 1050 (1666)
T KOG0985|consen 972 QVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD 1050 (1666)
T ss_pred HHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC
Confidence 32 22 45666667788999999999999999988754211 11111122221111 112222222222211110
Q ss_pred -----------------------CCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHH
Q 003150 481 -----------------------LDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAID 537 (844)
Q Consensus 481 -----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 537 (844)
+..+....+.|+ -.-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++
T Consensus 1051 a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLi---e~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1051 APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLI---ENIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHH---HHhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHH
Confidence 111111111111 123344444444444433 3568888888888888888887
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 003150 538 LFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQE 617 (844)
Q Consensus 538 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 617 (844)
-|-+. -|+..|..++.++.+.|.+++-..++....+..-+|.+. +.|+-+|++.+++.+-++++ ..||.
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~ 1194 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNV 1194 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCc
Confidence 76433 356778889999999999998888888888776666554 46888888888887766654 33566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDL 697 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 697 (844)
.....+.+-|...|.++.|.-+|... ..|..|...+.+.|.+..|...-+++ .+..+|.-+..+
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFA 1258 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHH
Confidence 66666677777777777776665532 23566666677777777766654433 123456555555
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc
Q 003150 698 FGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 767 (844)
+...+.+.-|. +..+.+.-.+.-...|+.-|...|-+++-+.+++..+.++--+.+.+.-|+-+|++-
T Consensus 1259 Cvd~~EFrlAQ--iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQ--ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHHH--hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 55444433221 111122233445666777788888999999999999999888888888888888764
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.5e-11 Score=127.11 Aligned_cols=275 Identities=13% Similarity=0.069 Sum_probs=204.3
Q ss_pred CHHHHHHHHHhcCC--CCh-HhHHHHHHHHHHcCCchHHHHHHHHHHHCC-CC-CChHHHHHHHHHHhchhchHHHHHHH
Q 003150 500 RLDLAYKIFKRMSE--KDV-VCWNSMITRYSQNGKPEEAIDLFRQMAIEG-VK-HDCMSLSAALSACANLHALHYGKEIH 574 (844)
Q Consensus 500 ~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~~~ 574 (844)
...+|...|..+++ +|+ .....+..+|...+++++|.++|+...+.. .. -+...|.+.|=-.- + +.+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHHH
Confidence 34567777777554 233 333456677777788888888888776642 11 13344444432111 1 1111111
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003150 575 S-LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRK---QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP 650 (844)
Q Consensus 575 ~-~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 650 (844)
. .+++. -+..+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+-+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 1 22222 2557889999999999999999999999988763 567888888888888999999999999876 667
Q ss_pred CHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 003150 651 DHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTL 726 (844)
Q Consensus 651 d~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 726 (844)
... .|..+...|.+.++++.|+-.|+.+.+ +.| +.....+++..+-+.|+.|+|+++++++ ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 664 788888899999999999999999854 778 5777888899999999999999999998 3333 33333334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 727 LGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 727 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
...+...++.++|...+|++.++-|++...+.+++.+|...|+.+.|..-+..+-+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4556677899999999999999999999999999999999999999999888776543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.9e-11 Score=126.69 Aligned_cols=245 Identities=13% Similarity=0.115 Sum_probs=194.8
Q ss_pred CchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HHH
Q 003150 531 KPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDS--CRSDNIAESVLIDLYAKCGNLDF-ART 607 (844)
Q Consensus 531 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~ 607 (844)
+..+|+..|...... +.-......-+-.+|...+++++++.+|+.+.+.. .-.+..+|...+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999995443 33444667778889999999999999999998762 22456677766544433222221 222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC
Q 003150 608 VFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA 686 (844)
Q Consensus 608 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 686 (844)
+. .+....+.+|-++.++|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.. +..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence 22 22334678999999999999999999999999999 788 4468877777788889999999999887 334
Q ss_pred CchHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 687 RMEHYAC---MVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 687 ~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
++.||++ |+-.|.+.++++.|+-.|+++ .+.|.. ++...+...+.+.|+.|+|++++++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5556665 577899999999999999998 777865 66666777788999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHcC
Q 003150 762 NIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 762 ~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
.++...+++++|...++++++.-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999998753
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=8.9e-10 Score=118.97 Aligned_cols=219 Identities=12% Similarity=-0.028 Sum_probs=127.2
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHH-------HHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKH-DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAE-------SVLID 594 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-------~~li~ 594 (844)
...+.+.|+++.|.+.++.+.+.. | +...+..+...+...|+++.+.+++..+.+.+..+..... ..+++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555443 2 2233444444555555555555555555554433222111 11111
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhhhCCH
Q 003150 595 LYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF---LAIISACGHAGQV 668 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~ 668 (844)
.-......+...+.++..++ ++...+..++..+...|+.++|.+++++..+ ..||.... ..........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCCh
Confidence 11122233444555555553 3777888888888888999999998888888 35555421 1111123344677
Q ss_pred HHHHHHHHHhHhhcCCCC-Cc--hHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003150 669 EAGIHYFHCMTEEYGIPA-RM--EHYACMVDLFGRAGRLNKALETINS--M-PFAPDAGVWGTLLGACRVHGNVELAEVA 742 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 742 (844)
+.+.+.++...+. .| ++ ....+++.++.+.|++++|.+.|++ . ...|+...+..+...+...|+.+.|..+
T Consensus 316 ~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 316 EKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777653 33 34 5566777777788888888887773 2 5567776677777777777777777777
Q ss_pred HHHhhc
Q 003150 743 SSHLFD 748 (844)
Q Consensus 743 ~~~~~~ 748 (844)
+++.+.
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 777644
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=1.3e-09 Score=117.08 Aligned_cols=143 Identities=13% Similarity=0.003 Sum_probs=72.3
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 003150 601 NLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHC 677 (844)
Q Consensus 601 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 677 (844)
+.+...++++.+++ ++......+..++...|+.++|.+++++..+ ..||.... ++.+....++.+++.+..+.
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHH
Confidence 34444445554442 3445555555566666666666666655555 23333111 12222233555555555555
Q ss_pred hHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 678 MTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 678 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
..+. .+-|+..+.++..++.+.|++++|.+.|++. ...|+...+..|...+...|+.+.|...+++.+.+
T Consensus 320 ~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 320 QIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5442 2223444555555555555555555555555 44555555555555555555555555555555443
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=4.7e-10 Score=120.37 Aligned_cols=217 Identities=10% Similarity=0.045 Sum_probs=164.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-------HHHHHHHHHH
Q 003150 492 TDMYAKCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDC-------MSLSAALSAC 561 (844)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~ 561 (844)
...+...|+++.|...++++.+ | +......+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999888888765 2 5677788888999999999999999999887755332 1233333333
Q ss_pred hchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 003150 562 ANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFH 641 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 641 (844)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++++..+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 3333444445555544332 345777888899999999999999999988775332222234455556799999999999
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 642 EMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 642 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
+..+ -.||.. .+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|.+.+++.
T Consensus 319 ~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 319 QQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9998 467765 566777899999999999999999965 5899888999999999999999999998875
No 48
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.4e-06 Score=95.37 Aligned_cols=674 Identities=13% Similarity=0.135 Sum_probs=357.6
Q ss_pred HHHHHhcCChhhHhhhccCCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCch
Q 003150 88 LGMYVLCGGFIDAGNMFPRLDL---ATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLR 164 (844)
Q Consensus 88 ~~~~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 164 (844)
.+.+..+|.+.+|.++-...|+ ++.-|-|.+-+.=...|.+.--+..|..+...| +.|..----+.+.-...|+.+
T Consensus 367 FneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rkq 445 (1666)
T KOG0985|consen 367 FNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQ 445 (1666)
T ss_pred HHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHH
Confidence 3444567888888888877765 566666666666677788877888888888877 334332223333334445555
Q ss_pred HHHHHHHHH-----HHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCC-----------CcchHHHHHHHHHhCCC
Q 003150 165 FGKLVHDMI-----WLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQR-----------DCVLWNVMLNGYVTCGE 228 (844)
Q Consensus 165 ~a~~~~~~~-----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~ 228 (844)
....++.+= .+.|--.-++--+.-++.|.+.+-...+...|.+..+- -..-|-.+|+...+ -.
T Consensus 446 LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~s 524 (1666)
T KOG0985|consen 446 LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SS 524 (1666)
T ss_pred HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cC
Confidence 544444321 12332111111122234444444444444444433220 11234456666655 56
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHhh----------------ccCCchHH---HHHHHHHHHhcCC---------
Q 003150 229 SDNATRAFKEMRISETKPNSVTFACILSVCA----------------VEAMTDFG---TQVHGVVVSVGLE--------- 280 (844)
Q Consensus 229 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----------------~~~~~~~a---~~~~~~~~~~g~~--------- 280 (844)
++.+.++...|.+..- ....++.+...+. +....+.+ -++++.-...+..
T Consensus 525 PD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~ 602 (1666)
T KOG0985|consen 525 PDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGND 602 (1666)
T ss_pred hhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcc
Confidence 7788887777766321 1112222222221 12222221 1222222222211
Q ss_pred -CChhhhhHHHHHHhcCCChhHHHHHhccCCC--CCccchH----HHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccc
Q 003150 281 -FDPQVANSLLSMYSKSGRLYDALKLFELMPQ--INLVTWN----GMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFS 353 (844)
Q Consensus 281 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 353 (844)
.+..-+..+...|.+.|-...|++.+..+.. +.++.-+ --+..|.-.-.++.+++.++.|...+++-|..+..
T Consensus 603 mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~V 682 (1666)
T KOG0985|consen 603 MFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVV 682 (1666)
T ss_pred ccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1112255667888899999999998887764 2221111 12345556667899999999999988887766655
Q ss_pred cchhhhhccccchhhHHHHHHHHH-----------hCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC----------
Q 003150 354 SFLPSICEVASIKQGKEIHGYIIR-----------NGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA---------- 412 (844)
Q Consensus 354 ~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 412 (844)
.+..-|...=..+...++|+.... .++..|+.+.-..|.+.++.|.+.+.+++.++-.-
T Consensus 683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 544444433233333344443322 13566777778889999999999999888765211
Q ss_pred ---------------------CChhhH------HHHHHHHHhcCCchHHHHHHHHHHHcCCCC-----------ChhhHH
Q 003150 413 ---------------------ADVVMF------TAMISGYVLNGISHEALEKFRWLIQEKIIP-----------NTVTLS 454 (844)
Q Consensus 413 ---------------------~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~t~~ 454 (844)
+|.+.| -..|..|.+.=++...-.+...+......- ..+...
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChH
Confidence 111111 012333333322221111111111110000 000111
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHH--------------------------------------
Q 003150 455 SILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYA-------------------------------------- 496 (844)
Q Consensus 455 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------------------------------------- 496 (844)
.+..-+.+.+.+..-...++..+..|.+ +..++|+|...|.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 1222223333333333333333333322 2333333333332
Q ss_pred --------------------------hcCCHHHHHHHHHhc-----------C------CCChHhHHHHHHHHHHcCCch
Q 003150 497 --------------------------KCGRLDLAYKIFKRM-----------S------EKDVVCWNSMITRYSQNGKPE 533 (844)
Q Consensus 497 --------------------------~~g~~~~A~~~~~~m-----------~------~~~~~~~~~li~~~~~~g~~~ 533 (844)
+..+.+-..+++.+- . ..|+..-+.-+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 233333222222110 0 013334444566666677777
Q ss_pred HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003150 534 EAIDLFRQMAIEGVKH-DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMM 612 (844)
Q Consensus 534 ~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 612 (844)
+-++++++..-..-.. ....+..++-.-+-..+.....++.+.+-.... | .+.......+-+++|..+|+..
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHh
Confidence 7777777665322110 111111111111111122222222222211110 0 0111222223333444444322
Q ss_pred CC-------------------------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCC
Q 003150 613 QR-------------------------KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQ 667 (844)
Q Consensus 613 ~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 667 (844)
.- .....|..+..+-.+.|...+|++-|-+ .-|...|.-++..+.+.|.
T Consensus 1075 ~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCc
Confidence 10 1346899999999999999999987743 2356789999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003150 668 VEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLF 747 (844)
Q Consensus 668 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 747 (844)
+++-.+++...+++ .-+|..+ +.|+-+|++.+++.|-.+++. .|+..-......-|...|.++.|+-.+..
T Consensus 1149 ~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 99999988877764 5566544 678999999999999888874 47777788888999999999999888764
Q ss_pred cCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCeeEE
Q 003150 748 DLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGYSWI 794 (844)
Q Consensus 748 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 794 (844)
.+.|..|+......|.+..|...-++.....+-|+.+..+|
T Consensus 1220 ------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1220 ------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 56677888888888888887765544433333355555555
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.2e-09 Score=103.16 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=193.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCC-C-CchhHHHHHHHHHHhcC
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSC-R-SDNIAESVLIDLYAKCG 600 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~-~~~~~~~~li~~y~~~g 600 (844)
..++....+.+++++-.......|+..+...-+-...+.-...+++.|..+|+.+.+... . .|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 344555556777777777777777655544444444445667788888888888887731 1 24556655443222222
Q ss_pred CHHH-HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHh
Q 003150 601 NLDF-ARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCM 678 (844)
Q Consensus 601 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 678 (844)
++.- |..++ .+.+-.+.|..++.+-|+..++.++|...|++.++ +.|... .|+.+..-|....+...|++.++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 22222 23333455666777888899999999999999999 678775 5666666899999999999999999
Q ss_pred HhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc
Q 003150 679 TEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG 755 (844)
Q Consensus 679 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 755 (844)
.+ +.| |-..|-.|+.+|.-.+...=|+=+|++. .++|+ ...|.+|...|.+.++.++|+..+++++.....+..
T Consensus 391 vd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred Hh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 66 566 7888999999999999999999999998 67775 699999999999999999999999999999988999
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 756 YYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 756 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
+++.|+++|-+.++.++|...+.+-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999998876544
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=5e-10 Score=120.86 Aligned_cols=283 Identities=13% Similarity=0.002 Sum_probs=192.5
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHH
Q 003150 427 LNGISHEALEKFRWLIQEKIIPNTV-TLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAY 505 (844)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 505 (844)
..|+++.|.+.+.+..+. .|+.. .+-..-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356666666666554443 23322 222333445555666666666666654432222223334467788899999999
Q ss_pred HHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHH---hchhchHHHHHHHHHHHH
Q 003150 506 KIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSAC---ANLHALHYGKEIHSLMIK 579 (844)
Q Consensus 506 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~ 579 (844)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+.......-..+. ...+..+.+.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998865 3 66778889999999999999999999999887543332211111221 222333333344444444
Q ss_pred hCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003150 580 DSC---RSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQEAA---WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD 651 (844)
Q Consensus 580 ~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 651 (844)
... +.++..+..+...+...|+.++|.+++++..+ ||... +..........++.+.+++.+++..+ ..|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence 322 24788889999999999999999999998875 44331 12222333446788999999999887 4676
Q ss_pred HH--H-HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 652 HV--T-FLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 652 ~~--t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
.. . ..++...|.+.|++++|.++|+.... ....|+.+.+..+..++.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65 3 45677789999999999999996444 457899888999999999999999999999874
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.1e-09 Score=110.48 Aligned_cols=274 Identities=15% Similarity=0.092 Sum_probs=138.3
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHH
Q 003150 482 DGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEK---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAAL 558 (844)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 558 (844)
..++.+...-.+-+...+++.+..++++.+.+. +...+..-|..+...|+..+-..+=.+|++.- +-.+++|-++-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 334444445555566677777777777766553 33445555666777777766666666666542 23345555555
Q ss_pred HHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChHHHHHHHHHHHhcCCh
Q 003150 559 SACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K---QEAAWNSMIAAYGCHGHL 633 (844)
Q Consensus 559 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~ 633 (844)
--|...|..++|++++.......-. -...|-.+...|+-.|..|.|...+....+ + -+..| +..-|.+.+..
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence 5555556666666665554432211 122344455555555555555555443322 0 01111 22234455555
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhc-CCCC----CchHHHHHHHHHHhcCCHHHH
Q 003150 634 KDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEY-GIPA----RMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 634 ~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A 707 (844)
+.|.++|.+... +.|+.. ..+-+.-...+.+.+.+|..+|+.....- .+.+ ...+++.|+.++.+.+++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 555555555554 444332 33333333344555555555555544210 0000 122345555555555555555
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 708 LETINSM-PF-APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 708 ~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
+..+++. .. ..|+.++.++.-.+...||++.|...+.+++.+.|+|..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 5555554 22 223455555555555555555555555555555555544444444
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=4.3e-12 Score=130.01 Aligned_cols=250 Identities=14% Similarity=0.201 Sum_probs=107.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CC----CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchh
Q 003150 491 ITDMYAKCGRLDLAYKIFKRM-SE----KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLH 565 (844)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 565 (844)
+...+.+.|++++|.+++++. .. .|...|..+.......++.++|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345677788888888888532 22 24555666666666778888888888888765432 34445555555 6778
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCChHHHHHHH
Q 003150 566 ALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ-----RKQEAAWNSMIAAYGCHGHLKDSLALF 640 (844)
Q Consensus 566 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~ 640 (844)
++++|.++.....+.. +++..+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887776655432 455666778888889999999999888754 246778888899999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003150 641 HEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP 718 (844)
Q Consensus 641 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 718 (844)
++.++ ..|+. .....++..+...|+.+++.++++...+. .+.++..+..++.+|...|+.++|+..+++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999 67864 56778888899999999999999888774 3557778889999999999999999999988 3345
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 719 -DAGVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 719 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
|+.+...+..++...|+.+.|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 678888888999999999999999888765
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.8e-10 Score=113.63 Aligned_cols=198 Identities=15% Similarity=0.095 Sum_probs=166.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS 660 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 660 (844)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788999999999999999997654 356788889999999999999999999998843 334457777788
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 738 (844)
.+...|++++|.+.++.+.+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999773222234567788899999999999999999887 44444 5778888889999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 739 AEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887754
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=5.3e-08 Score=97.89 Aligned_cols=437 Identities=11% Similarity=0.065 Sum_probs=317.3
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhh
Q 003150 317 WNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFK 396 (844)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 396 (844)
|--...--...+++..|..+|+...... ..+...|...+..-.+...+..|+.+++..+..-...| ..|-..+.+--.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHH
Confidence 3333333345677889999999887643 12233333444555677889999999999887633333 345556666777
Q ss_pred CCCHHHHHHHHHhCC--CCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHH
Q 003150 397 CRDVKMACKVFKENT--AADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHC 474 (844)
Q Consensus 397 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 474 (844)
.|++..|+++|++-. +|+...|++.|+-=.+....+.|..++++.+-. .|+..+|.-..+--.+.|....+..++.
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 899999999999844 599999999999999999999999999998764 5999999888877788899999999999
Q ss_pred HHHHh-CC-CCCccchHHHHHHHHhcCCHHHHHHHHHhcC----CC-ChHhHHHHHHHHHHcCCch---HHHHH-----H
Q 003150 475 YILKN-GL-DGKCHVGSAITDMYAKCGRLDLAYKIFKRMS----EK-DVVCWNSMITRYSQNGKPE---EAIDL-----F 539 (844)
Q Consensus 475 ~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~---~A~~~-----~ 539 (844)
.+++. |- ..+..++++....=..+..++.|.-+|+-.. +. ....|......--+-|+.. .++-- +
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 88765 22 1233455566655667788888888876443 22 2334444444444555543 33322 2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHH--------HhcCCHHHHHHHH
Q 003150 540 RQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSD--NIAESVLIDLY--------AKCGNLDFARTVF 609 (844)
Q Consensus 540 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y--------~~~g~~~~A~~~~ 609 (844)
+.++..+ .-|-.++-..+..-...|+.+...++++.++..- +|- ...|...|-.. ....+++.+.++|
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333332 4566777777888888899999999999988653 332 12222222111 2457888899999
Q ss_pred HhcCC--C-C----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhc
Q 003150 610 DMMQR--K-Q----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEY 682 (844)
Q Consensus 610 ~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 682 (844)
+...+ | . ...|-....--.++.+...|.+++-..+. ..|...+|...|..-.+.+.+|...++++...+
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-- 465 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-- 465 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 87654 2 2 23454445555678899999999988764 799999999999999999999999999999866
Q ss_pred CCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 683 GIPA-RMEHYACMVDLFGRAGRLNKALETINSMPFAP----DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 683 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
..| +..+|.-...+-...|+.+.|..+|+-.-..| -...|.+.+.--...|.++.|..+++++++..+... .|
T Consensus 466 -~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vW 543 (677)
T KOG1915|consen 466 -FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VW 543 (677)
T ss_pred -cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HH
Confidence 466 67788888888899999999999998873333 247899999988899999999999999999887655 88
Q ss_pred HHHHHHHH
Q 003150 758 VLLSNIHA 765 (844)
Q Consensus 758 ~~l~~~y~ 765 (844)
+..++.-.
T Consensus 544 isFA~fe~ 551 (677)
T KOG1915|consen 544 ISFAKFEA 551 (677)
T ss_pred HhHHHHhc
Confidence 88887766
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.5e-07 Score=100.66 Aligned_cols=396 Identities=13% Similarity=0.090 Sum_probs=254.9
Q ss_pred hCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhh-H
Q 003150 378 NGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA---ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVT-L 453 (844)
Q Consensus 378 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 453 (844)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|..+.++-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34667899999999999999999999999998554 3456899999999999999999999988766543454443 3
Q ss_pred HHHHHHHh-cccchHHHHHHHHHHHHhC--CC--CCccchHHHHHHHHhcC-----------CHHHHHHHHHhcCC----
Q 003150 454 SSILPACA-DLAALKLGKELHCYILKNG--LD--GKCHVGSAITDMYAKCG-----------RLDLAYKIFKRMSE---- 513 (844)
Q Consensus 454 ~~ll~a~~-~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~---- 513 (844)
-..-+.|. +.+.++++..+-..++... .. .....+-.+.-+|...- .-.++...+++..+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 4567777777766666521 11 12233333333343211 12234455555432
Q ss_pred -CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHh-CCCCchhHHHH
Q 003150 514 -KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKD-SCRSDNIAESV 591 (844)
Q Consensus 514 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ 591 (844)
|++..| +.--|+-.++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... |....... .
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 233333 33346677788888888888888766777777777777777888888888887776533 22111100 0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------------------------------CC-hHHHHHHHHHHHhcCChHHHHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQR-------------------------------KQ-EAAWNSMIAAYGCHGHLKDSLAL 639 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~g~~~~A~~l 639 (844)
-++.=..-++.++|......+.. .+ +.++..+..-....+ ..+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccc
Confidence 11111123444444333222210 01 112221111111100 000000
Q ss_pred HHHHHHCCCC--CCH------HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHH
Q 003150 640 FHEMLNNKIK--PDH------VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALET 710 (844)
Q Consensus 640 ~~~m~~~g~~--pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 710 (844)
.. |...-+. |+. ..|......+...+..++|...+.+..+ +.| ....|...+..+...|+++||.+.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 00 1111122 232 1344445567888999999988887744 455 577788888999999999999988
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 711 INSM-PFAPDA-GVWGTLLGACRVHGNVELAEV--ASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 711 ~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
|... .+.|+. .+..++...+...|+...|.. ....+++++|.++.+|..|+.++...|+.++|.+.+..-.+-
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8777 778884 788888889999999999988 999999999999999999999999999999999999876543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=2e-06 Score=90.13 Aligned_cols=432 Identities=14% Similarity=0.159 Sum_probs=235.6
Q ss_pred hhHhHHHHHHHhcCChhhHhhhccCC----CC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 003150 82 ALGAKILGMYVLCGGFIDAGNMFPRL----DL-ATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKA 156 (844)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~a~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 156 (844)
.++-.-++...++|.+..-+..|+.. |. .....|...|.-....+-++-++++|++..+- .|. .-.-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 44555566667788888888888763 21 12234888888888888888899999888753 333 36667777
Q ss_pred HhccCCchHHHHHHHHHHHh------CCCCCcchHHHHHHHhhccCCh---HHHHHHHhcCCC--CCc--chHHHHHHHH
Q 003150 157 CSALGNLRFGKLVHDMIWLM------GCEIDVFVGSSLVKLYTENRCI---DEARYVFDKMSQ--RDC--VLWNVMLNGY 223 (844)
Q Consensus 157 ~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~--~~~--~~~~~li~~~ 223 (844)
++..+++++|.+.+..++.. ..+.+...|.-+-+..++.-+. -....+++.+.. +|. ..|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 88888998888888776532 1245556677666666554322 223344454443 343 4799999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHh-cCCCChhhhhHHHHHHhcCCChhHH
Q 003150 224 VTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSV-GLEFDPQVANSLLSMYSKSGRLYDA 302 (844)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A 302 (844)
.+.|.+++|.++|++-... .....-|..+.++|+.-.....+..+- ..... |-+-+. -+++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHHH
Confidence 9999999999999887654 344556666777666433222111111 00001 111111 122222
Q ss_pred HHHhccCCC---------------CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchh
Q 003150 303 LKLFELMPQ---------------INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQ 367 (844)
Q Consensus 303 ~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 367 (844)
..-|+.+.. .++..|..-+. +..|+..+-...|.+.... +.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka----------------- 382 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA----------------- 382 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC-----------------
Confidence 333333322 12223333222 2244555555555555443 222211
Q ss_pred hHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCC-------hhhHHHHHHHHHhcCCchHHHHHHHH
Q 003150 368 GKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAAD-------VVMFTAMISGYVLNGISHEALEKFRW 440 (844)
Q Consensus 368 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (844)
...-...|..+.+.|-..|+++.|+.+|++...-+ ..+|......=.+..+++.|+++.++
T Consensus 383 ------------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 383 ------------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred ------------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 11123456777888888888888888888755422 13455555555667778888877665
Q ss_pred HHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHH
Q 003150 441 LIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWN 520 (844)
Q Consensus 441 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 520 (844)
.... |.... + .+...+...++ .+| .+..++...++.--..|-++....+++++.+--+.|=.
T Consensus 451 A~~v---P~~~~----~-~~yd~~~pvQ~-rlh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 451 ATHV---PTNPE----L-EYYDNSEPVQA-RLH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred hhcC---CCchh----h-hhhcCCCcHHH-HHH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH
Confidence 5432 32211 1 11111111110 111 12234455555556677777777777777653332222
Q ss_pred HHHH---HHHHcCCchHHHHHHHHHHHCCCCCChH-HHHHHHHHHh---chhchHHHHHHHHHHHHhCCCC
Q 003150 521 SMIT---RYSQNGKPEEAIDLFRQMAIEGVKHDCM-SLSAALSACA---NLHALHYGKEIHSLMIKDSCRS 584 (844)
Q Consensus 521 ~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~~~~~~a~~~~~~~~~~g~~~ 584 (844)
.+++ .+-.+..++++.+++++-...---|+.. .|+..|.-+. ....++.|+.+|++..+ |.+|
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2221 2334455677777776655443334432 3333333322 22356777777777776 5554
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=5.1e-08 Score=94.27 Aligned_cols=438 Identities=13% Similarity=0.118 Sum_probs=222.0
Q ss_pred HHHhcCCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchh
Q 003150 291 SMYSKSGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQ 367 (844)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 367 (844)
..|.+.|++++|...+..+.+ ++...|-.+.-++.-.|.+.+|..+-.+.. -++-....++...-+.++-+.
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 344555666666666555443 333444444444444555555555443321 111222223333344555555
Q ss_pred hHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC--CChhhHHHH-HHHHHhcCCchHHHHHHHHHHHc
Q 003150 368 GKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA--ADVVMFTAM-ISGYVLNGISHEALEKFRWLIQE 444 (844)
Q Consensus 368 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~ 444 (844)
...+++.+...- .---+|..+.-..-.+++|++++.++.. |+....|.- .-+|.+..-++-+.+++.--.+.
T Consensus 140 ~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 140 ILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 555555443221 1122333333334456777777777544 333344432 33556666666666666554443
Q ss_pred CCCCChhhHHHHHHHHhcc--cchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhc-----CCHHHHHHHHHhcCCCChH
Q 003150 445 KIIPNTVTLSSILPACADL--AALKLGKELHCYILKNGLDGKCHVGSAITDMYAKC-----GRLDLAYKIFKRMSEKDVV 517 (844)
Q Consensus 445 g~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~ 517 (844)
-||+ |+..-+.+|..- =.-..+++-...+.+.+-+. -..+.-.++. ..-+.|++++-.+.+.=+.
T Consensus 215 --~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 215 --FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred --CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 2332 333333344221 11111222222222211110 0011112221 1223444444333322222
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003150 518 CWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYA 597 (844)
Q Consensus 518 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 597 (844)
.--.|+--|.+.+++.+|..+.+++.- ..|-......+..+- +..-.+
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa------------------------------lGQe~g 334 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA------------------------------LGQETG 334 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH------------------------------hhhhcC
Confidence 223344456777778888777766532 233333333222221 111111
Q ss_pred hcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHH
Q 003150 598 KCGNLDFARTVFDMMQR-----KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGI 672 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 672 (844)
....+.-|.+.|+-.-+ ..+.--.+|.+.+.-..++++.+..++....- +..|...-..+..|.+..|.+.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHH
Confidence 12223344444443322 12223445555555566677777777766653 3334444445777888899999999
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 003150 673 HYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAG-VWGTLLGACRVHGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 673 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 751 (844)
++|-.+.. ..++.+......|..+|.+.|..+-|.+++-++....+.. ......+-|.+.+.+--|-+++..+-.++|
T Consensus 414 elf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 414 ELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 99987744 2333344444567889999999999999999986555554 444455669999999999999998888888
Q ss_pred CCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCC
Q 003150 752 QNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPG 790 (844)
Q Consensus 752 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 790 (844)
+- +.| .|+-..-..++.++-....++.|+
T Consensus 493 ~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 493 TP-ENW---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred Cc-ccc---------CCccchHHHHHHHHHcCCCCCCch
Confidence 63 332 344445556777665544444454
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.1e-11 Score=86.78 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 003150 211 RDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAV 260 (844)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 260 (844)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=2.3e-08 Score=99.00 Aligned_cols=286 Identities=12% Similarity=0.044 Sum_probs=191.8
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 003150 428 NGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKI 507 (844)
Q Consensus 428 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (844)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+.....++.+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777776655554332 2334445555666677777777777776665566666666667777788888888776
Q ss_pred HHhcC---CCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCC
Q 003150 508 FKRMS---EKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRS 584 (844)
Q Consensus 508 ~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 584 (844)
.+++. ..++........+|.+.|++.+.+.++.+|.+.|.--|...- + .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------H
Confidence 66544 356777788888888888888888888888888755443210 0 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISA 661 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 661 (844)
...+++.+++=....+..+.-...++..++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|. ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 112233333333333333333344555543 3455556667777778888888888888877777766 222334
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVELAE 740 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 740 (844)
+.+-++.+.-++..+...+.++. ++..+.+|+.+|.+.+.|.+|.+.++.. +..|+...|.-+..++...|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 66677777777777776664344 4467888888888888899888888877 77888888888888888888888888
Q ss_pred HHHHHhhc
Q 003150 741 VASSHLFD 748 (844)
Q Consensus 741 ~~~~~~~~ 748 (844)
+..++.+-
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 88887764
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=2.6e-06 Score=89.39 Aligned_cols=174 Identities=12% Similarity=0.146 Sum_probs=114.2
Q ss_pred cchHHHHHHHhhccCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 003150 182 VFVGSSLVKLYTENRCIDEARYVFDKMSQ-----RDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILS 256 (844)
Q Consensus 182 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 256 (844)
+.+|-.-+....+.|++...+..|++... .....|...+.-.-..|-++-++.++++..+- ++..-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 34566666777788888888888886543 23346888887777888888888888888753 3333556677
Q ss_pred HhhccCCchHHHHHHHHHHHh------cCCCChhhhhHHHHHHhcCCChh---HHHHHhccCCC--CC--ccchHHHHHH
Q 003150 257 VCAVEAMTDFGTQVHGVVVSV------GLEFDPQVANSLLSMYSKSGRLY---DALKLFELMPQ--IN--LVTWNGMIAG 323 (844)
Q Consensus 257 ~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li~~ 323 (844)
.++..+++++|.+.+..++.. ..+.+-..|..+-+..++..+.- ....++..+.. +| ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 777888888888888777532 23455566666666666543321 23333444432 23 2479999999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhc
Q 003150 324 HVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICE 361 (844)
Q Consensus 324 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 361 (844)
|.+.|.+++|.++|++-...- .+..-|..+.++|+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 999999999999998876542 233334455555543
No 61
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=9.4e-07 Score=93.39 Aligned_cols=203 Identities=14% Similarity=0.125 Sum_probs=128.0
Q ss_pred HHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHH
Q 003150 558 LSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSL 637 (844)
Q Consensus 558 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 637 (844)
+..|.+.|.++.|.++-... .|.+.....|-+-..-+-+.|++.+|++++-.+..|+.. |..|-++|..++.+
T Consensus 798 i~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHH
Confidence 33444444444443332222 122333444445555566778888888888887777643 56788888888888
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003150 638 ALFHEMLNNKIKPDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP 715 (844)
Q Consensus 638 ~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 715 (844)
++..+ ..||. .|...+..-+...|++.+|...|-+... |.+-+++|-.++.|++|..+-+.-+
T Consensus 871 rlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 871 RLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 87765 35555 4677777778888999999888876644 7778889989999999988877652
Q ss_pred CC----CCHHHHHH------HHHHHHhcCCHHHHHHHH------HHhh-----cCCCCCCchHHHHHHHHHhcCCcchHH
Q 003150 716 FA----PDAGVWGT------LLGACRVHGNVELAEVAS------SHLF-----DLDPQNSGYYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 716 ~~----p~~~~~~~------ll~~~~~~g~~~~a~~~~------~~~~-----~~~p~~~~~~~~l~~~y~~~g~~~~a~ 774 (844)
-. .-...|.- .+..+-++|-++.|...+ +-++ .....-+..+..++...-..|++++|.
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edas 1015 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDAS 1015 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhh
Confidence 11 01123322 122233455555554332 1111 223445678888999999999999998
Q ss_pred HHHHHHHH
Q 003150 775 KIRRLMKE 782 (844)
Q Consensus 775 ~~~~~m~~ 782 (844)
+.+-+..+
T Consensus 1016 khyveaik 1023 (1636)
T KOG3616|consen 1016 KHYVEAIK 1023 (1636)
T ss_pred HhhHHHhh
Confidence 86655443
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.3e-11 Score=84.71 Aligned_cols=50 Identities=30% Similarity=0.545 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003150 615 KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH 664 (844)
Q Consensus 615 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 664 (844)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.7e-07 Score=95.78 Aligned_cols=365 Identities=13% Similarity=0.131 Sum_probs=217.3
Q ss_pred hhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHHhcccchHHHHHH
Q 003150 394 YFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTV-TLSSILPACADLAALKLGKEL 472 (844)
Q Consensus 394 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~ 472 (844)
..+.+..++|...++.....+..+...-...+.+.|++++|+.+|+.+.+.+..--.. .-..++.+- ...
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~---------a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA---------AAL 159 (652)
T ss_pred HHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---------Hhh
Confidence 3467888888888885555555566666677888899999999999987765432111 111111111 111
Q ss_pred HH-HHHHhCCCCCccchHHH---HHHHHhcCCHHHHHHHHHhc--------CCCC-----h-----HhHHHHHHHHHHcC
Q 003150 473 HC-YILKNGLDGKCHVGSAI---TDMYAKCGRLDLAYKIFKRM--------SEKD-----V-----VCWNSMITRYSQNG 530 (844)
Q Consensus 473 ~~-~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m--------~~~~-----~-----~~~~~li~~~~~~g 530 (844)
-. .+......| ..+|..+ .-.+...|++.+|+++++.. .+.| . ..--.|...+...|
T Consensus 160 ~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 160 QVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 11 122222222 2223222 23456789999999998876 1111 1 12234556778899
Q ss_pred CchHHHHHHHHHHHCCCCCChHHH----HHHHHHHhchhchHH--HHHHHHH-----------HHHhCCCCchhHHHHHH
Q 003150 531 KPEEAIDLFRQMAIEGVKHDCMSL----SAALSACANLHALHY--GKEIHSL-----------MIKDSCRSDNIAESVLI 593 (844)
Q Consensus 531 ~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~--a~~~~~~-----------~~~~g~~~~~~~~~~li 593 (844)
+.++|.+++....... .+|.... |.++.. ..-.++-. ....++. .....-......-++++
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 3444322 222222 11111111 1111111 11111111222334566
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHHHHH-H-hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCH
Q 003150 594 DLYAKCGNLDFARTVFDMMQRKQ-EAAWNSMIAAY-G-CHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQV 668 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~-~-~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~ 668 (844)
.+|. +..+.+.+.....+... ...+.+++... . +...+.+|.+++.+.-+. .|+. +.....+.-....|++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCH
Confidence 6664 55667777777776533 33444444332 2 223578888888887763 5665 3444455567889999
Q ss_pred HHHHHHHH--------HhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHH
Q 003150 669 EAGIHYFH--------CMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--------PFAPD-AGVWGTLLGACR 731 (844)
Q Consensus 669 ~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~ 731 (844)
+.|.+++. .+.+ +.-.+.+...++.++.+.+..+-|.+++.+. ...+. ..+|.-+...-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999988 4433 3334566788899999988865555555444 22333 256666677777
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
++|+-++|...++++++.+|++....+.|.-.|+... .+.|..+-+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 8899999999999999999999999999988887653 444554433
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=5.1e-09 Score=111.48 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=167.0
Q ss_pred HHHHHHHHHHhchhchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-C
Q 003150 552 MSLSAALSACANLHALHYGKEIHSLMIKD-----SC-RSDN-IAESVLIDLYAKCGNLDFARTVFDMMQR-------K-Q 616 (844)
Q Consensus 552 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-~ 616 (844)
.|+..+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666777777777777777766543 21 1222 2234577888889999998888887653 1 1
Q ss_pred ---hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcC--C
Q 003150 617 ---EAAWNSMIAAYGCHGHLKDSLALFHEMLN-----NKIK-PDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYG--I 684 (844)
Q Consensus 617 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 684 (844)
..+++.|...|.+.|++++|...+++..+ .|.. |+.. -++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 35788888889999999888877776654 2222 3332 455566679999999999999988766544 2
Q ss_pred CCC----chHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-
Q 003150 685 PAR----MEHYACMVDLFGRAGRLNKALETINSM---------PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDL- 749 (844)
Q Consensus 685 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 749 (844)
.++ ..+++.|..+|...|+++||.+++++. ...+. ...++.|..+|...++.+.|.+.++....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 568999999999999999999999887 12333 356778889998888888888888877653
Q ss_pred ---C---CCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 750 ---D---PQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 750 ---~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
. |+-...|..|+.+|...|++++|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4445678899999999999999999877653
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8.1e-07 Score=88.08 Aligned_cols=306 Identities=12% Similarity=0.026 Sum_probs=215.3
Q ss_pred CCCChhhHHHHHHHHhcc--cchHHHHHHHHHHH-HhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHH
Q 003150 446 IIPNTVTLSSILPACADL--AALKLGKELHCYIL-KNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSM 522 (844)
Q Consensus 446 ~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 522 (844)
+.|...+....+.+++.. ++-..+.+.+-.+. ...++.++....++.+.+...|+.++|...|++...-|+.+..+|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 345555555556555443 34444444444433 446777888999999999999999999999998765444333322
Q ss_pred ---HHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003150 523 ---ITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKC 599 (844)
Q Consensus 523 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 599 (844)
.-.+.+.|+.+....+...+.... +-....|-.-........+++.|..+-+..++.+- .+...+-.-..++...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhc
Confidence 334567888888887777776532 11222222223334556778888888777776542 2333333344667788
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-hhCCHHHHHHH
Q 003150 600 GNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAII-SACG-HAGQVEAGIHY 674 (844)
Q Consensus 600 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~-~~g~~~~a~~~ 674 (844)
|++++|.-.|+.... -+..+|..|+.+|...|++.+|..+-+..... +.-+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999986553 37889999999999999999999988887763 333334544332 2232 33345788888
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 675 FHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 675 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
+++.. .+.|+ ......+..++.+.|+.++++.++++. ...||....+.|.......+.+++|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 88764 46775 556677889999999999999999988 67899999999999999999999999999999999999
Q ss_pred CCchH
Q 003150 753 NSGYY 757 (844)
Q Consensus 753 ~~~~~ 757 (844)
+....
T Consensus 504 ~~~sl 508 (564)
T KOG1174|consen 504 SKRTL 508 (564)
T ss_pred chHHH
Confidence 85443
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=7.8e-09 Score=116.08 Aligned_cols=211 Identities=11% Similarity=0.002 Sum_probs=157.4
Q ss_pred hchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHH
Q 003150 565 HALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNSMIAAYGCHGHLKDSLALFH 641 (844)
Q Consensus 565 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~ 641 (844)
+++++|...++.+.+.. +.+...+..+..++...|++++|...|++..+ | +...|..+...|...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34667777777766654 33566777788888999999999999998764 3 46688889999999999999999999
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003150 642 EMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP 718 (844)
Q Consensus 642 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 718 (844)
+..+ +.|+.. .+..++..+...|++++|+..++++.+. .+| ++..+..+..+|...|+.++|.+.++++ +..|
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9999 677754 3334455567789999999999988663 345 4666788899999999999999999987 5556
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 719 DA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 719 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+. ..++.+...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+... +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 64 44555555566666 4777777777764433333334478889999998888877 666554
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=4.4e-08 Score=93.94 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=181.7
Q ss_pred cCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHh-CCCCc--hhHHHHHHHHHHhcCCHHHH
Q 003150 529 NGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKD-SCRSD--NIAESVLIDLYAKCGNLDFA 605 (844)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~y~~~g~~~~A 605 (844)
.+++++|.++|-+|.+.. +-+..+-.++-+-+-+.|.++.|+.+|+.+.++ +...+ ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776532 112223344555566667777777777777654 22222 22334577888999999999
Q ss_pred HHHHHhcCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhhhCCHHHHHHHHHHh
Q 003150 606 RTVFDMMQRKQ---EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV----TFLAIISACGHAGQVEAGIHYFHCM 678 (844)
Q Consensus 606 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~ 678 (844)
+.+|..+.+.+ ......|+..|-+..++++|++.-+++...|-.+..+ .|.-|........+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999888743 4467778999999999999999999999876555553 4556666777788999999999988
Q ss_pred HhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 679 TEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA--GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 679 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
.+ ..| ....--.+++.+...|+++.|.+.++.. ...|+. .+...|..+|...|+.+.+...+.+..+..|...
T Consensus 207 lq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 207 LQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred Hh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 65 345 4555567889999999999999999988 556663 6788888899999999999999999999888765
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 755 GYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 755 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...++--.+....|.-+....+.++++.+
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~ 312 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRK 312 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhC
Confidence 55444444445556555555566666543
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.13 E-value=4.2e-08 Score=97.18 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=97.2
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 003150 560 ACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDS 636 (844)
Q Consensus 560 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 636 (844)
+--..|+.+.+-.+..++.+..-.++....-.........|+...|..-.++..+ .+.........+|.+.|++...
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 3344444444444444444432233344444444444445555555444443322 3444455555555555555555
Q ss_pred HHHHHHHHHCCCCCCH-------HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 003150 637 LALFHEMLNNKIKPDH-------VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALE 709 (844)
Q Consensus 637 ~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 709 (844)
..++.+|.+.|+--|. .+|..++.-+...+..+.-...++....+ .+-++..-.+++.-+.++|+.++|.+
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 5555555555443332 24444554444444444444444444332 23333444455555555555555555
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 710 TINSM-PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 710 ~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
+++.. +-.-|.. -..+..+..-+|.+.=++.+++.++..|++|..+..|+.+|.+.+.|.+|...++
T Consensus 285 ~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 285 IIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54443 2112221 1112223344444444444555555555555555555555555555555555444
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.4e-07 Score=93.88 Aligned_cols=273 Identities=14% Similarity=0.107 Sum_probs=171.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhc
Q 003150 419 TAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKC 498 (844)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 498 (844)
-.-.+-+...+++.+.+++++...+.. ++....+..-|.++...|+...-..+-..+++. .+....+|-++.-.|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 333444555566666666666655531 222233333333444444433333332222222 233444555666666667
Q ss_pred CCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHH
Q 003150 499 GRLDLAYKIFKRMSEK---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHS 575 (844)
Q Consensus 499 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 575 (844)
|+..+|++.|.+...- =...|-.....|+-.|..+.|+..+...-+.- |.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G------------------------- 378 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PG------------------------- 378 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cC-------------------------
Confidence 7777777777765432 24567777777777777777777665543310 00
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC
Q 003150 576 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN--KIKP 650 (844)
Q Consensus 576 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p 650 (844)
-..|.. | +.--|.+.++++-|.++|.+... .|+...+-+.......+.+.+|..+|+..+.. .+.+
T Consensus 379 -----~hlP~L--Y--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 379 -----CHLPSL--Y--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred -----CcchHH--H--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 011211 1 22235666777777777776553 36666777766666777888888888776631 0111
Q ss_pred ----CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 003150 651 ----DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWG 724 (844)
Q Consensus 651 ----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 724 (844)
-..+++.|..+|.+.+.+++|+..|+.... ..| ++.++++++-.|...|+++.|.+.|.+. .++|+..+-.
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 234678888899999999999999999866 455 7899999999999999999999999888 8899988888
Q ss_pred HHHHHHHh
Q 003150 725 TLLGACRV 732 (844)
Q Consensus 725 ~ll~~~~~ 732 (844)
.+++.+..
T Consensus 527 ~lL~~aie 534 (611)
T KOG1173|consen 527 ELLKLAIE 534 (611)
T ss_pred HHHHHHHH
Confidence 88875543
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.1e-07 Score=90.97 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=109.9
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHH
Q 003150 497 KCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEI 573 (844)
Q Consensus 497 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 573 (844)
-+|+.-.|..-|+...+ | +...|--+...|.+..+.++....|.+....+ |
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p------------------------ 391 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--P------------------------ 391 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--C------------------------
Confidence 35555555555555443 1 22224445555666666666666666655433 1
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003150 574 HSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP 650 (844)
Q Consensus 574 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 650 (844)
.++.+|-.-..++.-.+++++|..-|++... .++..|-.+..+..+.+++++++..|++.+.. ++-
T Consensus 392 ----------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~ 460 (606)
T KOG0547|consen 392 ----------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPN 460 (606)
T ss_pred ----------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 1233333334444445566666666665543 23444444544555555666666666666653 222
Q ss_pred CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC---------chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 003150 651 DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR---------MEHYACMVDLFGRAGRLNKALETINSM-PFAPDA 720 (844)
Q Consensus 651 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 720 (844)
-...|+-....+...++++.|.+.|+..++ ++|+ +.+--+++-.-. .+++..|.+++++. .+.|..
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchH
Confidence 234555555566666666666666666543 2332 111111111112 25666666666665 455543
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 721 -GVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 721 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
..+.+|...-.+.|+.++|+..+++...+
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566666666666666666666665544
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=2.8e-08 Score=99.11 Aligned_cols=198 Identities=17% Similarity=0.177 Sum_probs=123.1
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDL 595 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 595 (844)
...+..+...|...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4556667777888888888888888776542 22 22333445555
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAG 671 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 671 (844)
|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+....|. ...+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5556666666666654442 2344566666666777777777777777765322222 23455555667777777777
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 672 IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 672 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777776552 2224556667777777777777777777765 2223 3455556666667777777777777766555
Q ss_pred CC
Q 003150 750 DP 751 (844)
Q Consensus 750 ~p 751 (844)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=2.2e-08 Score=102.68 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=146.3
Q ss_pred hchHHHHHHHHHHHHh-CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 003150 565 HALHYGKEIHSLMIKD-SCRSD--NIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLA 638 (844)
Q Consensus 565 ~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 638 (844)
+..+.+..-+..++.. ...|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555556556533 22222 35577778889999999999999987764 357889999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 003150 639 LFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--P 715 (844)
Q Consensus 639 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 715 (844)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 67775 5777777788889999999999998866 4554322222223445677899999998664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHH--HHHHH----HhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 716 FAPDAGVWGTLLGACRVHGNVELA--EVASS----HLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 716 ~~p~~~~~~~ll~~~~~~g~~~~a--~~~~~----~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
..|+...|. + .....|+...+ ...+. ...++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~~~~~-~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN-I--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH-H--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333332232 2 22234444332 22222 2235566777899999999999999999999988776544
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=1.2e-08 Score=93.51 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVD 696 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 696 (844)
+...|.-+|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+...+ +.| +.++.+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 345577789999999999999999998 577764 888888889999999999999998865 566 5788889999
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 697 LFGRAGRLNKALETINSM---PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
.+|..|++++|...|++. |..|. +.+|..+.....+.|+.+.|+..+++.++++|+++.....+++.....|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999988 44444 37788887777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 003150 773 VNKIRRLMKERGV 785 (844)
Q Consensus 773 a~~~~~~m~~~~~ 785 (844)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999888776654
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=1.7e-06 Score=92.98 Aligned_cols=441 Identities=13% Similarity=0.068 Sum_probs=243.1
Q ss_pred hcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccc
Q 003150 277 VGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFS 353 (844)
Q Consensus 277 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 353 (844)
..+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888899999999999999999999988764 344678899899999999999999988765543334433333
Q ss_pred cch-hhhh-ccccchhhHHHHHHHHHhC--C--CCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 003150 354 SFL-PSIC-EVASIKQGKEIHGYIIRNG--V--PLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVL 427 (844)
Q Consensus 354 ~ll-~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 427 (844)
.+. +.|. +.+..+++...-.+++... . ......+..+.-+|...-. +.+ ++. -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~--~~s------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QAN--LKS------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCC--ChH------HH
Confidence 333 2333 3355555555555544421 1 0111222222222221100 000 000 00
Q ss_pred cCCchHHHHHHHHHHHcC-CCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHH
Q 003150 428 NGISHEALEKFRWLIQEK-IIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYK 506 (844)
Q Consensus 428 ~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (844)
.....++++.+++..+.+ -.|+...|.++- ++-.++++.|.+...+..+.+-..+...+.-|.-.+...+++.+|+.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 111244555555555432 234443343332 33344555566555555555555555555555555566666666666
Q ss_pred HHHhcCCC---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHC--CCCCChHHHHHHHHHHhchhchHHHHHHHHHHHH--
Q 003150 507 IFKRMSEK---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIE--GVKHDCMSLSAALSACANLHALHYGKEIHSLMIK-- 579 (844)
Q Consensus 507 ~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-- 579 (844)
+.+...+. |-+.-..-+..-..-++.++|+.....+..- ...|-.. .++-....+....+.-
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-----------~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-----------TLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh-----------hhhhhhhhhhhcccccCc
Confidence 55543321 1111111111112244455554444443220 0000000 0000000000000000
Q ss_pred hCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003150 580 DSCRSDNIAESVLIDLYAKC---GNLDFARTVFDMMQRKQ------EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP 650 (844)
Q Consensus 580 ~g~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 650 (844)
......+.++..+....... -..+.....+...+.|+ ...|......+.+.+..++|...+.+... +.|
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~ 681 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDP 681 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cch
Confidence 00011112222222222111 11111112222222233 23567777888899999999988888776 455
Q ss_pred CH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCCC-HHHHH
Q 003150 651 DH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALE--TINSM-PFAPD-AGVWG 724 (844)
Q Consensus 651 d~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~ 724 (844)
-. ..|......+...|+.++|.+.|.... .+.| ++....++..++.+.|+..-|.. ++..+ .+.|+ ...|.
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 44 355555566788899999999998874 4778 47888999999999998776766 77666 67776 68999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc
Q 003150 725 TLLGACRVHGNVELAEVASSHLFDLDPQNSG 755 (844)
Q Consensus 725 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 755 (844)
.|.....+.|+.+.|...|..++++++.+|-
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999998863
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=2.1e-08 Score=112.70 Aligned_cols=177 Identities=11% Similarity=-0.042 Sum_probs=142.7
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHH
Q 003150 599 CGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
.+++++|...+++..+ .+...|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4568899999998775 3677888999999999999999999999999 56776 4677777789999999999999
Q ss_pred HHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 675 FHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSM--PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 675 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
++.+.+ +.|+ +..+..+...+...|++++|.+.+++. ...|+ +..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999966 4664 333444555677789999999999887 22354 4556667777788999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 751 PQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 751 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|++......|+..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998888889999988888 477776666654
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.3e-08 Score=97.22 Aligned_cols=224 Identities=16% Similarity=0.134 Sum_probs=154.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003150 520 NSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKC 599 (844)
Q Consensus 520 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 599 (844)
+.|..+|.+.|.+.+|.+.|+.-..+. | .+.+|-.|...|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~-----------------------------------~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--P-----------------------------------HPDTFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--C-----------------------------------chhHHHHHHHHHHHh
Confidence 567788888888888888887776653 2 233344455556666
Q ss_pred CCHHHHHHHHHhcCC--CChHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHH
Q 003150 600 GNLDFARTVFDMMQR--KQEAA-WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 600 g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
..++.|..+|.+-.+ |..+| ..-+...+-..++.++|.++|++..+ ..|+.+ ...++...|.-.++.|-|..++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHH
Confidence 666666666665544 32233 33345556666666777777776666 344433 4444555666667777777777
Q ss_pred HHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 676 HCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM---PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 676 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
+++.+ .|+. +++.|..+.-++.-++++|-++.-|++. ...|+ +.+|..|......-||+..|.+.++-++..+
T Consensus 348 RRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 77665 2332 4556666666666667777766666555 22344 4789998888888999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 751 PQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 751 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
|++.++++.|+-+-.+.|+.++|..++...+...
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999999877643
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=8e-08 Score=102.50 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQR----------KQE-AAWNSMIAAYGCHGHLKDSLALFHEMLNN---KIKPDH 652 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~ 652 (844)
.+++.|..+|.+.|++++|...++...+ +.+ ..++.++..|...+++++|..++++..+. -+.++.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 4556677778888888877777665432 122 24666777888899999999888876541 133444
Q ss_pred ----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhc-----CCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC--------
Q 003150 653 ----VTFLAIISACGHAGQVEAGIHYFHCMTEEY-----GIPA-RMEHYACMVDLFGRAGRLNKALETINSM-------- 714 (844)
Q Consensus 653 ----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------- 714 (844)
.++..|...+.+.|++++|.++|+++.+.. +..+ ...+++.|...|.+.+++++|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 378889999999999999999999987642 1122 2557788999999999999888888775
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 715 PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 715 ~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
+..|+. .+|..|...|...|+++.|+.+.++++.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 445664 7899999999999999999999998873
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=1.9e-06 Score=91.18 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=83.8
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003150 526 YSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFA 605 (844)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 605 (844)
-.....+.+|+.+++.++.+... .--|..+.+-|++.|+++.|.++|... ..++--|+||.+.|++++|
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 34455566666666655543321 122344445555555555555555332 1233445555555555555
Q ss_pred HHHHHhcCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcC
Q 003150 606 RTVFDMMQRKQ--EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYG 683 (844)
Q Consensus 606 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 683 (844)
.++-.+...|. +..|-+-..-+-.+|++.+|.++|-.. -.|+.. |..|-+.|..|..+++.++- .
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti----~~p~~a-----iqmydk~~~~ddmirlv~k~----h 877 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI----GEPDKA-----IQMYDKHGLDDDMIRLVEKH----H 877 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc----cCchHH-----HHHHHhhCcchHHHHHHHHh----C
Confidence 55555544432 233444444445555555555544322 133322 23344555555544443321 1
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003150 684 IPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVA 742 (844)
Q Consensus 684 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 742 (844)
-..-.++...+..-|...|++.+|.+-|-+.+ -|.+.++.|...+-++.|-++
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHH
Confidence 01112223334444555555555554444431 244444444444444444433
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.2e-06 Score=86.56 Aligned_cols=431 Identities=13% Similarity=0.087 Sum_probs=202.7
Q ss_pred HHHhhccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCch
Q 003150 189 VKLYTENRCIDEARYVFDKMSQ---RDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTD 265 (844)
Q Consensus 189 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 265 (844)
++.+.+.|++++|.+....+.. .|...+.+=+.+..+.+.+++|+.+.+.-.. ..+++..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~----------- 81 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSF----------- 81 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchh-----------
Confidence 4556666777777766666543 2334555556666666777777654443210 0000000
Q ss_pred HHHHHHHHHHHhcCCCChhhhhHHHHHHh--cCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHc
Q 003150 266 FGTQVHGVVVSVGLEFDPQVANSLLSMYS--KSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILS 343 (844)
Q Consensus 266 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 343 (844)
.+=.+|| +.+..++|...++.....+..+...--..+.+.|++++|+++|+.+.+.
T Consensus 82 ----------------------~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 82 ----------------------FFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred ----------------------hHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 0123333 4677777777777555444444444556677778888888888887665
Q ss_pred CCCCCccccccchhhhhccccchhhHHHHH-HHHHhCCCCc--hHHHHHHHHHhhhCCCHHHHHHHHHhC--------CC
Q 003150 344 GVKPDEITFSSFLPSICEVASIKQGKEIHG-YIIRNGVPLD--AFLKSALIDIYFKCRDVKMACKVFKEN--------TA 412 (844)
Q Consensus 344 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~ 412 (844)
+.. .+..-+++ +-...+...-. .+......|+ -..+-...-.+...|++.+|++++... ..
T Consensus 140 ~~d----d~d~~~r~----nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 140 NSD----DQDEERRA----NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred CCc----hHHHHHHH----HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 432 11111111 11111111111 1111122221 112222334456678888888877653 11
Q ss_pred CCh----------hhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH---HHHHhcccchHHH--HHHHHH--
Q 003150 413 ADV----------VMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSI---LPACADLAALKLG--KELHCY-- 475 (844)
Q Consensus 413 ~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~~~~~-- 475 (844)
.|. ..--.|...+-..|+.++|..++...+.... +|....... |.+.....++-.+ ...++.
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 111 1122344456678999999999988887643 333222221 1122222221111 000000
Q ss_pred ---------HHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHhHHHHHHHHH--HcCCchHHHHHHHHHH
Q 003150 476 ---------ILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKD-VVCWNSMITRYS--QNGKPEEAIDLFRQMA 543 (844)
Q Consensus 476 ---------~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 543 (844)
.+...-......-++++.+|. +..+.+.++-...+... ...+.+++.... +...+.+|.+++...-
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~ 368 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFA 368 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 000000011111234444443 34455666665555432 233333333322 2224566666666655
Q ss_pred HCCCCCChHHHHHHHHHHhchhchHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 003150 544 IEGVKHDCMSLSAALSACANLHALHYGKEIHS--------LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR- 614 (844)
Q Consensus 544 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 614 (844)
+....-........+......|+++.|.+++. .+.+.+.. +.+...++.+|.+.++-+.|..++++...
T Consensus 369 ~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 369 DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 43322223344444555566777777777776 33333333 33445566677777766666666654321
Q ss_pred -----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHH
Q 003150 615 -----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIH 673 (844)
Q Consensus 615 -----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 673 (844)
.. ...|.-++..-.++|+.++|..+++++.+. ..+|..+...++.+|++. +++.|..
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 11 112222333334455555555555555553 133444555555555543 3444443
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1e-06 Score=85.45 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=128.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHH
Q 003150 160 LGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQ---RDCVLWNVMLNGYVTCGESDNATRAF 236 (844)
Q Consensus 160 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (844)
.+|+..|..+++.-...+-+....+---+...|.+.|++++|...+..+.+ ++...|-.|...+.-.|.+.+|..+-
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 344555555544433222221122222233455667777777777766543 34445656666666667777776655
Q ss_pred HHHHhCCCCCChhh-HHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC--CC
Q 003150 237 KEMRISETKPNSVT-FACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ--IN 313 (844)
Q Consensus 237 ~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 313 (844)
... |+... -..++...-+.++-+.-.++++.+...- .---+|.++.--.-.+.+|++++.++.. |+
T Consensus 115 ~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 115 EKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred hhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 443 22222 2233344445666666666666554321 1123344443344467888888888765 44
Q ss_pred ccchHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccc--cchhhHHHHHHHHHhCCCCchHHHHHH
Q 003150 314 LVTWNGM-IAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVA--SIKQGKEIHGYIIRNGVPLDAFLKSAL 390 (844)
Q Consensus 314 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l 390 (844)
-...|.- .-+|.+..-++-+.+++.--.+. .||+ |+..=+.+|..-. +-..+..-...+.+++-..-++. .-|
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~-~~l 259 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI-EYL 259 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH-HHH
Confidence 4455543 34667777777777777766553 2332 3333344443221 11122222222222221110000 000
Q ss_pred HH-HhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 003150 391 ID-IYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWL 441 (844)
Q Consensus 391 i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (844)
++ -..-..+-+.|.+++-.+...=+..--.|+--|.+.++..+|..+.+++
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc
Confidence 00 0011122344555443322221222333444577888888888877655
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2.3e-07 Score=95.22 Aligned_cols=195 Identities=12% Similarity=0.034 Sum_probs=129.9
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHH
Q 003150 561 CANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNSMIAAYGCHGHLKDSL 637 (844)
Q Consensus 561 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 637 (844)
+...|+.+.|...+...++.. +.+...++.+...|...|++++|.+.|+...+ | +..+|..+...+...|++++|+
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 333344444444444443332 23566778888899999999999999998764 3 5678888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHH--HHHHHHHhC-
Q 003150 638 ALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLN--KALETINSM- 714 (844)
Q Consensus 638 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~- 714 (844)
+.|++..+ ..|+..........+...++.++|...|..... ...|+...+ .++..+ .|++. ++.+.+.+.
T Consensus 153 ~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 153 DDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcC
Confidence 99999998 567664322222234567789999999977654 234433222 333333 45443 334333322
Q ss_pred C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-CCCchHHHHHHH
Q 003150 715 P----FAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDP-QNSGYYVLLSNI 763 (844)
Q Consensus 715 ~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~ 763 (844)
. ..|+ ...|..+...+...|+.+.|+..++++++++| +..+.-..+..+
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 1 1222 36899999999999999999999999999997 545554445444
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=9.7e-05 Score=81.87 Aligned_cols=636 Identities=14% Similarity=0.038 Sum_probs=296.2
Q ss_pred hhHhHHHHHHHhcCChhhHhhhccCC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHH
Q 003150 82 ALGAKILGMYVLCGGFIDAGNMFPRL---DLATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCG-IRPDNHTFPSVMKAC 157 (844)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~a~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~ 157 (844)
..|..|-+.|...-+...|.+.|++- ...+..+|......|++...++.|..+.-.--+.. ...-...+...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45667777777777777888888764 45566778888888888888888887722221111 000111222222233
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHH---HHHHHhCCChhHHHH
Q 003150 158 SALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVM---LNGYVTCGESDNATR 234 (844)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~ 234 (844)
...++...+..-++...+.. +-|...|..|..+|.++|++..|.++|++...-++.+|-.- ...-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 45556666666666655543 45566778888888888888888888877765443332211 122355777888887
Q ss_pred HHHHHHhC------CCCCChhhHHHHHHHhhccCCchHHHHHHHHHH-------HhcCCCChhhhhHHHHHHhcCCChhH
Q 003150 235 AFKEMRIS------ETKPNSVTFACILSVCAVEAMTDFGTQVHGVVV-------SVGLEFDPQVANSLLSMYSKSGRLYD 301 (844)
Q Consensus 235 ~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~g~~~~~~~~~~li~~~~~~g~~~~ 301 (844)
.+...... +..--..++..+...+...|-...+...++.-+ ......+...|-. ..+
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~----------asd 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV----------ASD 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH----------HhH
Confidence 77766432 101111122212222222221112222221111 1111111111111 112
Q ss_pred HHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCC
Q 003150 302 ALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVP 381 (844)
Q Consensus 302 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 381 (844)
|..+|-+.. ||.+ -..++..+.. +....+.-|+.. +..+ |-+.+ .....+.
T Consensus 722 ac~~f~q~e-~~~v-n~h~l~il~~------------q~e~~~~l~~~d-~l~L------------g~~c~--~~hlsl~ 772 (1238)
T KOG1127|consen 722 ACYIFSQEE-PSIV-NMHYLIILSK------------QLEKTGALKKND-LLFL------------GYECG--IAHLSLA 772 (1238)
T ss_pred HHHHHHHhc-ccch-HHHHHHHHHH------------HHHhcccCcchh-HHHH------------HHHHh--hHHHHHh
Confidence 223333322 2211 1111111111 111112111111 0000 00000 0000001
Q ss_pred CchHHHHHHHHHhhh----CC----CHHHHHHHHHhC---CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh
Q 003150 382 LDAFLKSALIDIYFK----CR----DVKMACKVFKEN---TAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNT 450 (844)
Q Consensus 382 ~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (844)
.+...|..|+..|.+ +| +...|...+... ...+...||.|.-. ...|++.-|.-.|-+-.... +...
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 112222222222221 11 112344444332 22445555555433 33344444444443332221 1233
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHh-----cCC---CChHhHHHH
Q 003150 451 VTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKR-----MSE---KDVVCWNSM 522 (844)
Q Consensus 451 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~---~~~~~~~~l 522 (844)
.+|..+---|....+++.+...+......... +...+-.....--..|+.-++..+|.- +.+ ++..-|-.-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 34444444445555566666555554432211 111111111112234444444444443 111 233333333
Q ss_pred HHHHHHcCCchHHHHHHHHHHH---------CCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHh-CCCCchhHHH--
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAI---------EGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKD-SCRSDNIAES-- 590 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~-- 590 (844)
..-...+|+.++-+..-++.-. .+.+-+.+.|.......-+.+..+.+.+....++.. ..+.+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3334555555544433333221 133444566666666666666666665555443311 1122333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHh
Q 003150 591 --VLIDLYAKCGNLDFARTVFDMMQR-KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH----VTFLAIISACG 663 (844)
Q Consensus 591 --~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~ 663 (844)
.+...+...|+++.|...+..... .+..+-..-+.. ...|+++++++.|++... +.-+. +....++-+..
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHh
Confidence 455667778888888877765543 122221111222 456899999999999987 33332 23444555566
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHH---HHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCH
Q 003150 664 HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLN---KALETINSMP----FAPDAGVWGTLLGACRVHGNV 736 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~ 736 (844)
..+.-+.|...+-+... --+|+....-++.-++.-..+-. -+++-+.+.+ +..++.....++ +...|+-
T Consensus 1087 ~~~~k~~A~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i--~~~~~r~ 1162 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELI--YALQGRS 1162 (1238)
T ss_pred hcccchHHHHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHH--HHHhhhh
Confidence 77778888876666554 24555555555544433222211 1222222221 111222222222 4567888
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHhc
Q 003150 737 ELAEVASSHLFDLDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 767 (844)
...++...+....+|.++..|.+|.+-|+..
T Consensus 1163 ~~vk~~~qr~~h~~P~~~~~WslL~vrya~~ 1193 (1238)
T KOG1127|consen 1163 VAVKKQIQRAVHSNPGDPALWSLLSVRYAQR 1193 (1238)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8999999999999999999999999766554
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=6e-07 Score=82.50 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=156.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003150 519 WNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK 598 (844)
Q Consensus 519 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 598 (844)
...|.-+|.+.|+...|..-+++..+.. +.+..++..+...|.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D------------------------------------Ps~~~a~~~~A~~Yq~ 81 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD------------------------------------PSYYLAHLVRAHYYQK 81 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHHHH
Confidence 3445667777777777777777776643 2345566777888888
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHH
Q 003150 599 CGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
.|..+.|.+-|+.... .+-.+.|.-..-+|..|++++|...|++......-|.. .||..+.-+..+.|+.+.|.++
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 8888888888886653 45667788888889999999999999999885544444 4888888888889999999999
Q ss_pred HHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 003150 675 FHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 675 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 751 (844)
|++..+ +.| .+.....+.+.....|++-.|..+++.. ...+......-.+..-...||.+.+.+.-.++....|
T Consensus 162 l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 162 LKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 998866 455 4677888999999999999999998887 3447776666666777788999999988888888999
Q ss_pred CCCchHHHH
Q 003150 752 QNSGYYVLL 760 (844)
Q Consensus 752 ~~~~~~~~l 760 (844)
.....-..+
T Consensus 239 ~s~e~q~f~ 247 (250)
T COG3063 239 YSEEYQTFL 247 (250)
T ss_pred CcHHHHhHh
Confidence 876654433
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.87 E-value=7.8e-05 Score=78.94 Aligned_cols=441 Identities=13% Similarity=0.081 Sum_probs=226.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHH
Q 003150 327 NGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKV 406 (844)
Q Consensus 327 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 406 (844)
.+++...+.+.+..... ..-...|....--.+...|+.++|.......++.. .-+.+.|..+.-.+-...++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555554442 11122233222223344556666665555554432 23455666666666666777777777
Q ss_pred HHh---CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhcccchHHHHHHHHHHHHhCC-
Q 003150 407 FKE---NTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPN-TVTLSSILPACADLAALKLGKELHCYILKNGL- 481 (844)
Q Consensus 407 ~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~- 481 (844)
|.. ..+.|...|..+.-.-++.++++.......+..+. .|+ ...|..+..+..-.|+...+..+.+...+...
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 765 23345556665555555666666666665555543 232 33455555556666667777776666665542
Q ss_pred CCCccchHHH------HHHHHhcCCHHHHHHHHHhcCCC--ChH-hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChH
Q 003150 482 DGKCHVGSAI------TDMYAKCGRLDLAYKIFKRMSEK--DVV-CWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCM 552 (844)
Q Consensus 482 ~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 552 (844)
.|+...+.-. .....+.|.++.|.+.+...... |-. .-.+....+.+.++.++|..++..+.... ||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhH
Confidence 3333333211 12245677777777777665432 222 22345566778888888888888887754 7777
Q ss_pred HHHHHHHHHh-c-hhchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hHHHHHHHHH
Q 003150 553 SLSAALSACA-N-LHALHYGKEIHSLMIKD---SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQ-EAAWNSMIAA 626 (844)
Q Consensus 553 t~~~ll~a~~-~-~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~ 626 (844)
-|...+..|. + .+..+....++...... .-.|-....+.+. -..-.+..-+++..+.++. +.++..+.+.
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL 329 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLLSKGVPSVFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHhhcCCCchhhhhHHH
Confidence 7766665554 2 22233333444443322 1111111111110 0111111222222222221 2233333333
Q ss_pred HHhcCChHHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-ch
Q 003150 627 YGCHGHLKDSLALFHEML----NNK----------IKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-ME 689 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~----~~g----------~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 689 (844)
|-.....+-..++.-.+. ..| -.|... |+.-+...+-+.|+++.|..+++... +..|+ ++
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliE 406 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIE 406 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHH
Confidence 322221111111111111 111 134443 34445556778888888888888874 45665 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc-------hHHH-
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-PF-APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG-------YYVL- 759 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~- 759 (844)
-|-.-..++..+|.+++|..++++. .+ .||..+-.--..-..+.++.++|..+..+...-.-+-.. .|..
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 7777778888888888888888887 22 244333323333345667788888777766544331111 1221
Q ss_pred -HHHHHHhcCCcchHHHHHHHH
Q 003150 760 -LSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 760 -l~~~y~~~g~~~~a~~~~~~m 780 (844)
=+..|.+.|+|..|.+=+..+
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhH
Confidence 134577777887777655444
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=7.3e-08 Score=92.31 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=178.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSE--KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
+-+..+|.+.|.+.+|.+.|+.-.+ |-+.||--|-..|.+..+++.|+.+|.+-.+. .|-.+||..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---------- 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---------- 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----------
Confidence 5677889999999999999987653 67888999999999999999999999987763 466666532
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003150 567 LHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEM 643 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 643 (844)
.+...+...++.++|.++++...+ .|+.+..++..+|.-.++++-|+.+|+++
T Consensus 295 ------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 ------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 233445555677777777776654 35566666777888888899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-
Q 003150 644 LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR--MEHYACMVDLFGRAGRLNKALETINSM-PFAPD- 719 (844)
Q Consensus 644 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 719 (844)
++.|+ -+...|..+.-+|.-.+++|-++..|++...- .-.|+ .+.|-.+.....-.|++.-|.+-|+-. ...|+
T Consensus 351 LqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 88885 35667777777888888999888888887662 33343 567888888888889988888887766 33444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 720 AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 720 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
...++.|.-.-.+.|+++.|...+..+....|+-.+....|
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 47788887777888999999999888888888765544433
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=0.00019 Score=77.66 Aligned_cols=259 Identities=13% Similarity=0.083 Sum_probs=115.4
Q ss_pred CCcccHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh-C-------CC
Q 003150 110 ATSLPWNRMIR--VFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLM-G-------CE 179 (844)
Q Consensus 110 ~~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-------~~ 179 (844)
=|.++-..|+. .|..-|+.+.|.+-.+.++. ...|..+.+.|.+.++++-|+-.+..|... | .+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34444444444 35666777777666555543 345777777777777777777666665431 1 01
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 003150 180 IDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCA 259 (844)
Q Consensus 180 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 259 (844)
.+..+-....-.-...|.+++|..++.+-.+ |..|=.-|-..|.+++|+++-+.=-+-.++ .||..-..-+-
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLE 869 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHH
Confidence 1111111111222334555555555554432 222333344455555555544332111111 12211112222
Q ss_pred ccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHH
Q 003150 260 VEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRK 339 (844)
Q Consensus 260 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 339 (844)
..++.+.|.+.++.. |.+ -..+ ..++. .+........+.+. |...|.-....+-..|+.+.|+.+|..
T Consensus 870 ar~Di~~AleyyEK~---~~h-afev-~rmL~-----e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKA---GVH-AFEV-FRMLK-----EYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhccHHHHHHHHHhc---CCh-HHHH-HHHHH-----hChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 223333333322211 100 0000 00000 01111112222222 333343344444456777777777765
Q ss_pred HHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh
Q 003150 340 MILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE 409 (844)
Q Consensus 340 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 409 (844)
.+. |-++++..|-.|+.++|.++-++ ..|....--|.+.|-..|++.+|..+|.+
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 543 34455555666666666665443 23444455566666666666666666654
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8e-05 Score=80.47 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=105.5
Q ss_pred CCCcchHHHHHH--HhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhC-CC--------CCC
Q 003150 179 EIDVFVGSSLVK--LYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRIS-ET--------KPN 247 (844)
Q Consensus 179 ~~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~ 247 (844)
..|..+-.++++ .|..-|+++.|.+-.+.+. ....|..|.+.+++..+.+-|.-.+-.|... |. .|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 356677777764 6888999999988877665 4568999999999999999988888887532 11 222
Q ss_pred hhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCC-ccchHHHHHHHHh
Q 003150 248 SVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQIN-LVTWNGMIAGHVQ 326 (844)
Q Consensus 248 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 326 (844)
.+=.-+.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..-. ..+|..-...+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22122222335778999999999888765 355567788899999998876543311 1255555566666
Q ss_pred CCChhHHHHHHHHH
Q 003150 327 NGFMNEALDLFRKM 340 (844)
Q Consensus 327 ~g~~~~A~~~~~~m 340 (844)
.++++.|++.|++-
T Consensus 871 r~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKA 884 (1416)
T ss_pred hccHHHHHHHHHhc
Confidence 78899999888763
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.6e-06 Score=84.65 Aligned_cols=228 Identities=12% Similarity=0.046 Sum_probs=154.1
Q ss_pred CCChHHHHHHHHHHh--chhchHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHH-----
Q 003150 548 KHDCMSLSAALSACA--NLHALHYGKEIHSLMIK-DSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAA----- 619 (844)
Q Consensus 548 ~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~----- 619 (844)
.|+..+...-+.+++ ..++...+.+.+-.+.+ .-++.++....++.+.|...|+.++|+..|++...-|+.+
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 333334444444433 34444555555555543 3566777788888888888888888888888765432221
Q ss_pred --------------------------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhC
Q 003150 620 --------------------------------WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAG 666 (844)
Q Consensus 620 --------------------------------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g 666 (844)
|-.-.......++++.|+.+-++.++ +.|+.+ .+..-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhcc
Confidence 21122223344566777777777776 556554 3333344678889
Q ss_pred CHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH-HHHH-hcCCHHHHHH
Q 003150 667 QVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLL-GACR-VHGNVELAEV 741 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll-~~~~-~~g~~~~a~~ 741 (844)
++++|.-.|+..+. +.| +.+.|.-|+..|...|++.||.-.-+.. .+..++.+..-+. ..|. .-.--|+|+.
T Consensus 349 R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred chHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999854 677 7899999999999999999998655443 1223444443321 2232 2334588999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 742 ASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 742 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
.+++.+.++|.-.++.+.++.++...|+.+++..+++.-
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 999999999999999999999999999999999987643
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=5e-05 Score=84.05 Aligned_cols=270 Identities=13% Similarity=0.022 Sum_probs=147.3
Q ss_pred HHHHHHHhcC---CCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHH
Q 003150 503 LAYKIFKRMS---EKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIK 579 (844)
Q Consensus 503 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 579 (844)
.|...+.... ..+...||.|.-. ...|++.-|.-.|-+-.... +-+..+|..+--.|....+++.|.+.+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555555433 3566777776554 44455555554444433321 23445566666666777777777777776654
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh-----cCC---CChHHHHHHHHHHHhcCChHHHHHHH----------H
Q 003150 580 DSCRSDNIAESVLIDLYAKCGNLDFARTVFDM-----MQR---KQEAAWNSMIAAYGCHGHLKDSLALF----------H 641 (844)
Q Consensus 580 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-----~~~---~~~~~~~~li~~~~~~g~~~~A~~l~----------~ 641 (844)
.. +.+...|-...-.....|+.-++..+|.. +.+ ++..-|-+...-...+|++++-+..- +
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 32 22333333333333445666666666654 111 23334444444455566555433322 2
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHH----HHHHHHHhcCCHHHHHHHHHhCCC
Q 003150 642 EMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA----CMVDLFGRAGRLNKALETINSMPF 716 (844)
Q Consensus 642 ~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 716 (844)
+... | .|+. ..|........+.+.+++|.+...+...-...+-+...|+ ....++...|.++.|..-+...+.
T Consensus 958 ~yf~-~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 958 YYFL-G-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHh-c-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 3322 2 3443 5777777777777777777766665543222222333333 345566677888877766666555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH---HhcCCcchHHHHHH
Q 003150 717 APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH---ADAGQWGNVNKIRR 778 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---~~~g~~~~a~~~~~ 778 (844)
.-|..+.++-+.. .-.|+++.+...+++++.+..++....++++.+. ..++..+.|....-
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence 5555555554444 3456888888888888887666655445554443 33455556655433
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=2e-05 Score=76.51 Aligned_cols=313 Identities=13% Similarity=0.128 Sum_probs=200.0
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHH---HHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccc
Q 003150 389 ALIDIYFKCRDVKMACKVFKENTAADVVMFTAMI---SGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAA 465 (844)
Q Consensus 389 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 465 (844)
-|...+...|.+.+|..-|....+-|+..|-++. ..|...|+...|+.-+.+.++. +||...-..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi---------- 110 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI---------- 110 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH----------
Confidence 3445556667777777777777776666666554 3567777777777777776653 555432110
Q ss_pred hHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003150 466 LKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIE 545 (844)
Q Consensus 466 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 545 (844)
+.| ..+.|.|.++.|..-|+.+.+.++.- +....++.+.- +.+++.
T Consensus 111 ------------QRg------------~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~-------~~~e~~-- 156 (504)
T KOG0624|consen 111 ------------QRG------------VVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLA-------LIQEHW-- 156 (504)
T ss_pred ------------Hhc------------hhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHH-------hHHHHH--
Confidence 011 23557777777777777665432110 00001111110 111110
Q ss_pred CCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHH
Q 003150 546 GVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ---RKQEAAWNS 622 (844)
Q Consensus 546 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 622 (844)
.....+..+...|+...++.....++... +.|...+..-..+|...|++..|+.-+.... ..+....-.
T Consensus 157 -------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 157 -------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred -------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 11122223334455555555555555432 3466677777888999999999987766544 467777778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHH-------H--HHHhhhCCHHHHHHHHHHhHhhcCCCCC--
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNNKIKPDHVT----FLAI-------I--SACGHAGQVEAGIHYFHCMTEEYGIPAR-- 687 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~l-------l--~a~~~~g~~~~a~~~~~~~~~~~~~~p~-- 687 (844)
+...+...|+.+.++...++.++ +.||... |..| - ......+.|.++++..+...+ ..|.
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~ 303 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEET 303 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCccc
Confidence 88888999999999999999888 7888842 2221 1 123445667777766666544 3443
Q ss_pred ---chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 688 ---MEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 688 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
...+..+-.++...|++.||++..++. .+.|| +.++.--..++.....++.|+.-|+++.+.+|+|..+-.-+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 344556777888899999999998887 77777 68888888899888999999999999999999986654433
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-05 Score=81.63 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=116.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEA 670 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~ 670 (844)
+..+|.+.++.+.|+..|.+...+... -....+....++++...+...- +.|+.. -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445777778888888888875432110 1112233445566665555544 456553 22223556888999999
Q ss_pred HHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 671 GIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 671 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
|++.+.++++. .+.|...|+.-.-+|.+.|.+.+|++-.+.. ...|+. ..|.--..++..-.+++.|...+.+.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998773 2337889999999999999999998877666 556664 4555555556666789999999999999
Q ss_pred CCCCCCchHHHHHHHHHhc
Q 003150 749 LDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 749 ~~p~~~~~~~~l~~~y~~~ 767 (844)
.+|++..+-..+..++...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999988888777776654
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=0.00034 Score=74.29 Aligned_cols=437 Identities=15% Similarity=0.127 Sum_probs=244.6
Q ss_pred cCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHHHHHH
Q 003150 261 EAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEALDLF 337 (844)
Q Consensus 261 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 337 (844)
.+.+..+....+.+.+ +.+-...+....--.+...|+-++|......-.. ...+.|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555555554 2222222222222234456777777777766554 45577888777777778889999998
Q ss_pred HHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh---CCCCC
Q 003150 338 RKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE---NTAAD 414 (844)
Q Consensus 338 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~ 414 (844)
...... .||. ..++.-|.-.-++.|+++.....-.. .....
T Consensus 99 ~nAl~~--~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 877653 3332 22222222222222333332222222 22345
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCChhhHHHHHHH------HhcccchHHHHHHHHHHHHhCCCCCccc
Q 003150 415 VVMFTAMISGYVLNGISHEALEKFRWLIQEK-IIPNTVTLSSILPA------CADLAALKLGKELHCYILKNGLDGKCHV 487 (844)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a------~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 487 (844)
...|..+.-++.-.|+...|..+.++..+.. -.|+...+.-...- ....|.++.+.+........ +......
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~ 221 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAF 221 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHH
Confidence 5788888889999999999999998887765 35666655433322 23445555555544332211 1111222
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHhcCC--CChHhHHH-HHHHHHHcCCchHHH-HHHHHHHHCCC---CCChHHHHHHHHH
Q 003150 488 GSAITDMYAKCGRLDLAYKIFKRMSE--KDVVCWNS-MITRYSQNGKPEEAI-DLFRQMAIEGV---KHDCMSLSAALSA 560 (844)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~---~p~~~t~~~ll~a 560 (844)
--.-.+.+.+.+++++|..++..+.. ||..-|.. +..++.+-.+.-+++ .+|....+.-. .|-....+ .
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----v 297 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----V 297 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----H
Confidence 23345678899999999999999876 44444444 444443344444444 56665554321 12111111 1
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcC--------------CCChHHHH-
Q 003150 561 CANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDF----ARTVFDMMQ--------------RKQEAAWN- 621 (844)
Q Consensus 561 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~--------------~~~~~~~~- 621 (844)
.....-.+....++....+.|+++- +..+...|-.-.+.+- +.++...+. .|....|.
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 1112223334455555666676543 3334444432222211 111111111 12333444
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 003150 622 -SMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFG 699 (844)
Q Consensus 622 -~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 699 (844)
-++..|-..|+++.|..+.+..++ -.|+.+ -|..=...+.|.|++++|..++++..+ --.||...-+--+.-..
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHH
Confidence 467778889999999999999887 477765 444445678899999999999998866 23445544445667778
Q ss_pred hcCCHHHHHHHHHhC---CC--CC---C-HHHHHHHHH--HHHhcCCHHHHHHHHHHh
Q 003150 700 RAGRLNKALETINSM---PF--AP---D-AGVWGTLLG--ACRVHGNVELAEVASSHL 746 (844)
Q Consensus 700 ~~g~~~~A~~~~~~~---~~--~p---~-~~~~~~ll~--~~~~~g~~~~a~~~~~~~ 746 (844)
|+++.++|.++.... +. .. + ...|-.+-. ++.+.|++..|.+-+..+
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 899999998887665 11 00 1 145665544 467777777776544433
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=2.4e-05 Score=85.04 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=158.9
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChHh-HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHh----c--hh
Q 003150 495 YAKCGRLDLAYKIFKRMSE--KDVVC-WNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACA----N--LH 565 (844)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~~ 565 (844)
+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+++.+...+ |+...|-..+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 4566777777777765443 24333 3445566677777777777777777654 66665555555443 1 12
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 003150 566 ALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNL-DFARTVFDMMQRKQE-AAWNSMIAAYGCHGHLKDSLALFHEM 643 (844)
Q Consensus 566 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 643 (844)
..+.-.++++.+...- |.......+.-.+..-..+ ..+...+..+..+++ ..++.+-..|....+..-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3455556666554332 1111111111001111111 122233333334443 34455555555444444444455544
Q ss_pred HHC----C----------CCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHH
Q 003150 644 LNN----K----------IKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 644 ~~~----g----------~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 706 (844)
... | -.|... ++.-+...+.+.|++++|+++++..++ ..|+ ++.|..-+.+|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 332 1 123332 334444567788889999988888866 4664 7788888888889999999
Q ss_pred HHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc---------hHHHHHHHHHhcCCcchHHH
Q 003150 707 ALETINSM-PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG---------YYVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 707 A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---------~~~~l~~~y~~~g~~~~a~~ 775 (844)
|.+.++.. .+.+.. .+-+-....+.+.|+++.|+..+......+-+... +..--|.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888887 444433 44444555567788888888888777554421111 12345677888899988888
Q ss_pred HHHHHH
Q 003150 776 IRRLMK 781 (844)
Q Consensus 776 ~~~~m~ 781 (844)
-+..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 666554
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=8.3e-07 Score=89.57 Aligned_cols=246 Identities=11% Similarity=0.063 Sum_probs=112.8
Q ss_pred HHhcCCHHHHHHHHHhcCC--C--ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHH
Q 003150 495 YAKCGRLDLAYKIFKRMSE--K--DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYG 570 (844)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 570 (844)
+.-.|.+..+..-.+ ... + +.....-+.++|...|+++.++ .+..... .|....+..+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445677777775444 211 1 2233445567777777766443 3332222 45554444443333332222222
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003150 571 KEIHSLMIKDSCR-SDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIK 649 (844)
Q Consensus 571 ~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 649 (844)
..-+......... .+....-....+|...|++++|.+++... .+.......+..|.+.+|++.|.+.++.|.+ ..
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 2222222111111 12222222333444455555555544433 2333333444444455555555555555444 22
Q ss_pred CCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 003150 650 PDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLL 727 (844)
Q Consensus 650 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 727 (844)
.|.. ...+.. +.+.++.-.+.+.+|.-+|+++ ...+++.+.+.++
T Consensus 162 eD~~-l~qLa~--------------------------------awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 EDSI-LTQLAE--------------------------------AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CCHH-HHHHHH--------------------------------HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcHH-HHHHHH--------------------------------HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2222 111222 2222222223455555555555 2334556666666
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCc-chHHHHHHHHHH
Q 003150 728 GACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQW-GNVNKIRRLMKE 782 (844)
Q Consensus 728 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 782 (844)
.++...|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+++.+++.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6666677777777777777777777777777776666777777 345556666554
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.1e-05 Score=76.70 Aligned_cols=404 Identities=11% Similarity=0.086 Sum_probs=198.4
Q ss_pred cccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC--CChhhHHH-HHHHHHhc
Q 003150 352 FSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA--ADVVMFTA-MISGYVLN 428 (844)
Q Consensus 352 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 428 (844)
+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|-...++..|...++.+.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3444444445555555555554444432 22445556667777777777777777766543 22222221 23456667
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHH--hcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHH
Q 003150 429 GISHEALEKFRWLIQEKIIPNTVTLSSILPAC--ADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYK 506 (844)
Q Consensus 429 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (844)
+.+.+|+.+...|... |+...-..-+.+. -..+++..++.+.++... +.+..+.+...-...+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHH
Confidence 7888888888777542 2211111112111 123344444444333221 1112222222223345666666666
Q ss_pred HHHhcCC----CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHH----HHHHHHHHhchhchHHHHHHHHHHH
Q 003150 507 IFKRMSE----KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMS----LSAALSACANLHALHYGKEIHSLMI 578 (844)
Q Consensus 507 ~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~ 578 (844)
-|+...+ .....||.-+. ..+.+++..|++...+..++|++--+.- ..-.++ ...+.-...++...
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sa- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSA- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHH-
Confidence 6665543 23445554433 3344556666666666666665421110 000000 00000000000000
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 003150 579 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-H 652 (844)
Q Consensus 579 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~ 652 (844)
-+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-. -..+++.+..+-+.-+.+. .|= .
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ 310 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPP 310 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCCh
Confidence 012233344556788999999999999985 367776655422 2344555555555555653 443 3
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCC-CCchHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIP-ARMEHYACMVDLFGR-AGRLNKALETINSMPFAPDAGVWGTLLGA- 729 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~ll~~- 729 (844)
.||..++-.||+..-++-|-.++-+-... -.. .+...|+ |.+.+.- .-..++|++-+.++...--...-...+..
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999888888876442210 000 1223333 3343333 33566666555544100000001111111
Q ss_pred HHhcCCHH----HHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 730 CRVHGNVE----LAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 730 ~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
-.++.+-+ .+..-+++.+++- -......+++|+...++..+.++++.-.+
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11222222 2333344444432 12455678899999999999999986655
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=2.2e-06 Score=85.36 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR--KQ-E---AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV----TF 655 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~ 655 (844)
...+-.+...|.+.|++++|...|+++.. |+ . .+|..+..+|...|++++|+..++++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 33444555556666666666666665543 21 1 3455556666666666666666666665 333322 23
Q ss_pred HHHHHHHhhh--------CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 003150 656 LAIISACGHA--------GQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTL 726 (844)
Q Consensus 656 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 726 (844)
..+..++... |+.++|.+.|+.+.+. .|+ ...+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333333332 5556666666666542 232 1112111111 0000000 0011244
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCC---chHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 727 LGACRVHGNVELAEVASSHLFDLDPQNS---GYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 727 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999977654 68999999999999999999999888654
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.9e-05 Score=78.28 Aligned_cols=419 Identities=13% Similarity=0.080 Sum_probs=235.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCc-hHHHHHHHHHhhhCCCH
Q 003150 322 AGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLD-AFLKSALIDIYFKCRDV 400 (844)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 400 (844)
.+.+..|+++.|+..|.+...-.. +|.+-|+.=..++++.|+++.|.+=-..-++ +.|+ .--|+.+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 455678899999999988776543 3667777777888888888877654444433 3454 34677777777778888
Q ss_pred HHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH-----HHHhcccchHHHHHH
Q 003150 401 KMACKVFKENTAA---DVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSIL-----PACADLAALKLGKEL 472 (844)
Q Consensus 401 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-----~a~~~~~~~~~a~~~ 472 (844)
++|+.-|.+..+. |...++.+..++ ..+.+. |.. -.++..+..+. +.......+ ..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~---~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAY---VKI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHH---HHH
Confidence 8888888875543 445566666655 111111 100 01111111111 000000000 011
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCch----HHHHHHHHHHH-CCC
Q 003150 473 HCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPE----EAIDLFRQMAI-EGV 547 (844)
Q Consensus 473 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~-~g~ 547 (844)
...+.+. |+ -+..|....++..|.-.+......-...-..++ ......+. .......++.+ ...
T Consensus 152 l~~~~~~---p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 152 LEIIQKN---PT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEI--LASMAEPCKQEHNGFPIIEDNTEERRV 220 (539)
T ss_pred HHHhhcC---cH------hhhcccccHHHHHHHHHHhcCcccccccccccc--CCCCCCcccccCCCCCccchhHHHHHH
Confidence 1111100 00 011111111122222222111100000000000 00000000 00000000000 000
Q ss_pred CCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH---------
Q 003150 548 KHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEA--------- 618 (844)
Q Consensus 548 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------- 618 (844)
+--..-...+.++..+..+++.+.+-+....... .+..-++.....|...|.+.+....-+...+..-.
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 0111223455566666677777777777777665 55666677778888888877766665554432211
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHH
Q 003150 619 -AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARM-EHYACMVD 696 (844)
Q Consensus 619 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 696 (844)
+...+..+|.+.++++.|+..|++....-..||.. .+....+++.+..+.. --+.|.. .-...-+.
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERK---AYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHH---HhhChhHHHHHHHHHH
Confidence 22234456777889999999999977654454432 2223344554444433 2345532 11222367
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHH
Q 003150 697 LFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 774 (844)
.+.+.|++.+|+..+.++ ...|+ +..|.....++.+.|++..|..-.+..++++|+....|..=+-++....+|++|.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988 44565 6888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 003150 775 KIRRLMKER 783 (844)
Q Consensus 775 ~~~~~m~~~ 783 (844)
+.+.+-.+.
T Consensus 447 eay~eale~ 455 (539)
T KOG0548|consen 447 EAYQEALEL 455 (539)
T ss_pred HHHHHHHhc
Confidence 999866554
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=1.6e-06 Score=87.48 Aligned_cols=247 Identities=11% Similarity=0.086 Sum_probs=153.7
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCC--ccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHH
Q 003150 460 CADLAALKLGKELHCYILKNGLDGK--CHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAID 537 (844)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 537 (844)
..-.|.+..+..-.. . .+..+. .....-+.++|...|+.+.+..-...-..|.......+...+...++-+.++.
T Consensus 11 ~fy~G~Y~~~i~e~~-~--~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-L--KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHCTT-HHHHCHHHH-C--HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHhhhHHHHHHHhh-c--cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 344566665554333 1 122222 23344566778888988876655555455666665555444433345566766
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 003150 538 LFRQMAIEGVKHDC-MSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRK- 615 (844)
Q Consensus 538 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~- 615 (844)
-+++....+..++. .........+...|+++.|.+++... .+.......+.+|.+.++++.|.+.++.|.+-
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66665554444333 33333334567789999998877532 45666777899999999999999999999863
Q ss_pred ChHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchH
Q 003150 616 QEAAWNSMIAAY----GCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEH 690 (844)
Q Consensus 616 ~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 690 (844)
+..+...++.++ .-.+.+.+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+... ..| ++.+
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~ 237 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDT 237 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHH
Confidence 223333333333 2334799999999998775 577888889899999999999999999888643 445 4667
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHhC-CCCCC
Q 003150 691 YACMVDLFGRAGRL-NKALETINSM-PFAPD 719 (844)
Q Consensus 691 ~~~l~~~~~~~g~~-~~A~~~~~~~-~~~p~ 719 (844)
...++-+....|+. +.+.+++.++ ...|+
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 77777777777776 5566777776 23444
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=9.5e-07 Score=91.92 Aligned_cols=192 Identities=15% Similarity=0.114 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLA----- 657 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~----- 657 (844)
...|.-|...-...++-..|+..+.+..+ .|....-+|...|...|.-.+|+..++.-+... |...-...
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCccc
Confidence 34444444444555555566666666554 356677777888888888888888888876632 21110000
Q ss_pred ---HHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 003150 658 ---IISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRV 732 (844)
Q Consensus 658 ---ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 732 (844)
.-....+........++|-.+....+.++|++.+.+|.-+|--.|.+++|.+-|+.+ ..+|+ ..+|+-|...+..
T Consensus 397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 001222333444556667777665676789999999999999999999999999998 67776 5899999888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 003150 733 HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 733 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
....++|+.+|.+++++.|.-.-+.+.|+-.|...|.++||.+.+=.
T Consensus 477 ~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999996543
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=8.6e-07 Score=79.75 Aligned_cols=121 Identities=10% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003150 638 ALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-P 715 (844)
Q Consensus 638 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 715 (844)
.+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..++.++.+.|++++|...+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 56765 44556678889999999999998865 455 6788888999999999999999999888 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 716 FAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 716 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
..|+ +..|..+..++...|+.++|+..+++++++.|+++.++...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5554 6888888888899999999999999999999999999988887754
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=5.4e-05 Score=80.88 Aligned_cols=257 Identities=11% Similarity=-0.017 Sum_probs=152.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCChH-HHHH---HHHHHhchhchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKHDCM-SLSA---ALSACANLHALHYGKEIHSLMIKDSCRS-DNIAESVLIDLYA 597 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~ 597 (844)
...+...|++++|.+.+++..+.. |+.. .+.. ........+....+.+.+.. .....| .......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 334566788888888888877643 4332 2221 11111123344444444433 112223 2334445667788
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhhhCCHHHH
Q 003150 598 KCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKI-KPDH--VTFLAIISACGHAGQVEAG 671 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a 671 (844)
..|++++|.+.+++..+ .+...+..+...|...|++++|..++++.....- .|+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 88999999998887764 3466778888888999999999999988877321 1232 2344566778888999999
Q ss_pred HHHHHHhHhhcCCCCCchHH-H--HHHHHHHhcCCHHHHHHH------HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003150 672 IHYFHCMTEEYGIPARMEHY-A--CMVDLFGRAGRLNKALET------INSM-PFAPDAGVWGTLLGACRVHGNVELAEV 741 (844)
Q Consensus 672 ~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~------~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 741 (844)
..+++.........+..... . .+...+...|..+.+.++ .... +.............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99998875421111211111 1 223333444432222222 1111 111111222345566777888999998
Q ss_pred HHHHhhcCCC---------CCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 742 ASSHLFDLDP---------QNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 742 ~~~~~~~~~p---------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.++.+....- .......+.+.++...|++++|.+.+......
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887755221 23556678888999999999999988766544
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=2.4e-06 Score=81.29 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=89.3
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--HHHH
Q 003150 665 AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGAC-RVHGN--VELA 739 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~-~~~g~--~~~a 739 (844)
.++.+++...++...+. -+.+.+.|..++..|...|++++|.+.+++. ...|+ ..++..+..++ ...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55666776666666542 2336778888888888888888888888877 55564 56777777653 56666 4888
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 740 EVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 740 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
..+++++++.+|+++.++..|+..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888876543
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.54 E-value=7.5e-05 Score=81.22 Aligned_cols=284 Identities=12% Similarity=0.068 Sum_probs=142.0
Q ss_pred HHhhhCCCHHHHHHHHHhCCC--CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHh----c--
Q 003150 392 DIYFKCRDVKMACKVFKENTA--ADV-VMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACA----D-- 462 (844)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~-- 462 (844)
..+...|++++|.+.+.+... .|. .........+.+.|+.++|...|+.++..+ |+...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445677888888888866433 343 344555677788888888888888888764 66666655554443 1
Q ss_pred ccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHH-HHHHHHHhcCCCCh-HhHHHHHHHHHHcCCchHHHHHHH
Q 003150 463 LAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLD-LAYKIFKRMSEKDV-VCWNSMITRYSQNGKPEEAIDLFR 540 (844)
Q Consensus 463 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 540 (844)
..+.+....+++.+...-.. ......+.-.+.....+. .+...+..+..+.+ .+|+.+-..|....+..-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 12345555555555433211 111111110111111111 12222233333333 334444444443333333333333
Q ss_pred HHHHC----C----------CCCCh--HHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003150 541 QMAIE----G----------VKHDC--MSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDF 604 (844)
Q Consensus 541 ~m~~~----g----------~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 604 (844)
..... + -.|.. .++.-+...+...|+++.|.++.+..+.+. +..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 33221 1 11222 123333444556666666666666666553 2235555666666666666666
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHhhhCCHHHHHH
Q 003150 605 ARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV------TF--LAIISACGHAGQVEAGIH 673 (844)
Q Consensus 605 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~--~~ll~a~~~~g~~~~a~~ 673 (844)
|.+.++.... .|-..=+..+..+.+.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666665544 233344444555666666666666666665554433221 11 122335666666666666
Q ss_pred HHHHhHh
Q 003150 674 YFHCMTE 680 (844)
Q Consensus 674 ~~~~~~~ 680 (844)
.|..+.+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 6555544
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00082 Score=81.82 Aligned_cols=362 Identities=11% Similarity=-0.017 Sum_probs=219.4
Q ss_pred HHHHhhhCCCHHHHHHHHHhCCCCChhh--HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchH
Q 003150 390 LIDIYFKCRDVKMACKVFKENTAADVVM--FTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALK 467 (844)
Q Consensus 390 li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 467 (844)
....+...|++.+|..........+... ...........|+.+.+...+..+.......+..........+...++++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444666777777776666554432211 11122234456777777666665522211112222223333445667888
Q ss_pred HHHHHHHHHHHhCCC------CCc--cchHHHHHHHHhcCCHHHHHHHHHhcCC----CC----hHhHHHHHHHHHHcCC
Q 003150 468 LGKELHCYILKNGLD------GKC--HVGSAITDMYAKCGRLDLAYKIFKRMSE----KD----VVCWNSMITRYSQNGK 531 (844)
Q Consensus 468 ~a~~~~~~~~~~g~~------~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----~~~~~~li~~~~~~g~ 531 (844)
++........+.--. +.. .....+...+...|++++|...+++... .+ ...++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 888877766543111 111 1112233445678999999988887532 22 1345566667788999
Q ss_pred chHHHHHHHHHHHCCCC---C--ChHHHHHHHHHHhchhchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhc
Q 003150 532 PEEAIDLFRQMAIEGVK---H--DCMSLSAALSACANLHALHYGKEIHSLMIKD----SCR--S-DNIAESVLIDLYAKC 599 (844)
Q Consensus 532 ~~~A~~~~~~m~~~g~~---p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~~~ 599 (844)
+++|...+++.....-. + ...++..+...+...|+++.|...++..... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999998887643111 1 1234445556678889999999988876642 321 1 233445566777788
Q ss_pred CCHHHHHHHHHhcCC------C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhhh
Q 003150 600 GNLDFARTVFDMMQR------K--QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKI-KPDHVTF-----LAIISACGHA 665 (844)
Q Consensus 600 g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~-----~~ll~a~~~~ 665 (844)
|++++|...+.+... + ....+..+...+...|++++|...+.+.....- ......+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 999999988876532 1 133455566778899999999999988865211 1111111 1112344557
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCch----HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhc
Q 003150 666 GQVEAGIHYFHCMTEEYGIPARME----HYACMVDLFGRAGRLNKALETINSM-------PFAPD-AGVWGTLLGACRVH 733 (844)
Q Consensus 666 g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~ 733 (844)
|..+.|.+++...... . ..... .+..+..++...|+.++|...+++. +..++ ..++..+..++...
T Consensus 667 g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 667 GDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred CCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 8999999987775431 1 11111 1346777888999999999888876 22222 24566666778899
Q ss_pred CCHHHHHHHHHHhhcCCCCC
Q 003150 734 GNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~p~~ 753 (844)
|+.+.|...+.+++++....
T Consensus 745 G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 745 GRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred CCHHHHHHHHHHHHHHhCcc
Confidence 99999999999999886544
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.2e-07 Score=60.34 Aligned_cols=33 Identities=39% Similarity=0.616 Sum_probs=25.7
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHhcCC
Q 003150 177 GCEIDVFVGSSLVKLYTENRCIDEARYVFDKMS 209 (844)
Q Consensus 177 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 209 (844)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777888888888888888888888877774
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=0.0005 Score=73.42 Aligned_cols=189 Identities=12% Similarity=0.098 Sum_probs=102.8
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC--hHHHHHHHHHHHhcCC
Q 003150 560 ACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ--EAAWNSMIAAYGCHGH 632 (844)
Q Consensus 560 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~g~ 632 (844)
.+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++... ++ ...|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 4444555555555555554433 22344556677777778888888887776553 11 1245567777888888
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHH-H--HHHHHHhhhCCHHHHHHHHHHhHhh--cCCC-C-CchHHHHHHHHHHhcCCH
Q 003150 633 LKDSLALFHEMLNNKIKPDH-VTF-L--AIISACGHAGQVEAGIHYFHCMTEE--YGIP-A-RMEHYACMVDLFGRAGRL 704 (844)
Q Consensus 633 ~~~A~~l~~~m~~~g~~pd~-~t~-~--~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~-p-~~~~~~~l~~~~~~~g~~ 704 (844)
+++|+.++++.......+.. ... . .++.-+...|..+.+.++ +.+... ...+ + ........+.++...|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 88888888887543211122 111 1 223333444443333332 111110 0111 1 112222466777888899
Q ss_pred HHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 705 NKALETINSMP--FAP---D------AGVWGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 705 ~~A~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
++|..+++.+. ... . ..+.-...-++...||.+.|...+..++.+-
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99988887761 111 1 1122222233567899999999888877653
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.00027 Score=86.03 Aligned_cols=356 Identities=12% Similarity=0.052 Sum_probs=218.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHH----HHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHh
Q 003150 422 ISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILP----ACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAK 497 (844)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 497 (844)
...+...|++.+|....... ++......++. .....|...........+.......+..........+..
T Consensus 348 a~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 44466677777776655433 12222222221 223345555555555443221122233333444555677
Q ss_pred cCCHHHHHHHHHhcCC----CC------h--HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh----HHHHHHHHHH
Q 003150 498 CGRLDLAYKIFKRMSE----KD------V--VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDC----MSLSAALSAC 561 (844)
Q Consensus 498 ~g~~~~A~~~~~~m~~----~~------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~ 561 (844)
.|++++|...++.... .+ . .....+...+...|++++|...+++....-...+. .....+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8999999888875421 11 1 11122334456789999999999987663211221 2334444556
Q ss_pred hchhchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHH
Q 003150 562 ANLHALHYGKEIHSLMIKD----SCR-SDNIAESVLIDLYAKCGNLDFARTVFDMMQR-------K----QEAAWNSMIA 625 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~ 625 (844)
...|+++.|...+...... |-. ........+...+...|++++|...+++... + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7789999999998887643 211 1223445667788899999999998876542 1 1223445566
Q ss_pred HHHhcCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHH-----HHHHH
Q 003150 626 AYGCHGHLKDSLALFHEMLNN--KIKPDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHY-----ACMVD 696 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~--g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~ 696 (844)
.+...|++++|...+.+.... ...|.. .++..+.......|+.++|...++.+............+ .....
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 777889999999999987652 112222 234445556778999999999988885521111111111 11224
Q ss_pred HHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC------CCCchHHHHHHHH
Q 003150 697 LFGRAGRLNKALETINSMPF-A-PDA----GVWGTLLGACRVHGNVELAEVASSHLFDLDP------QNSGYYVLLSNIH 764 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y 764 (844)
.+...|+.++|.+++..... . ... ..+..+..++...|+.+.|...++++++... .....+..++.+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45668999999999877621 1 111 1244566667888999999999999887522 2234677899999
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 003150 765 ADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 765 ~~~g~~~~a~~~~~~m~~~ 783 (844)
...|+.++|...+.+..+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999988877654
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.42 E-value=0.0002 Score=69.88 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=194.2
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHhHHHHH---HHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHH-HHHHhchhchH
Q 003150 493 DMYAKCGRLDLAYKIFKRMSEKDVVCWNSMI---TRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAA-LSACANLHALH 568 (844)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~ 568 (844)
..+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|.+..+ .+||...-..- -....+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHH
Confidence 4456677888888888888777766666654 467778888888888877766 46774432211 12356788888
Q ss_pred HHHHHHHHHHHhCCCC--chhHH------------HHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC
Q 003150 569 YGKEIHSLMIKDSCRS--DNIAE------------SVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHG 631 (844)
Q Consensus 569 ~a~~~~~~~~~~g~~~--~~~~~------------~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 631 (844)
.|..=|+.++++.... ....+ ...+..+.-.|+...|+.....+.+ -|...|..-..+|...|
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 8888888887664321 11111 1123344556888888888887765 37777888889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCc----hHHHHH---------HHH
Q 003150 632 HLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARM----EHYACM---------VDL 697 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l---------~~~ 697 (844)
++..|+.=++..-. +..|. .++.-+-..+...|+.+.++...++-. .+.|+. .+|-.| +..
T Consensus 204 e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 204 EPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877766 44444 455556667788899888877666653 466652 122222 122
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcc
Q 003150 698 FGRAGRLNKALETINSM-PFAPDA-----GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWG 771 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 771 (844)
..+.++|.++.+-.++. ...|.. .....+-..++..|++.+|++...++++++|+|..++..-+.+|.....+|
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 34566777777766665 455652 223333344456789999999999999999999999999999999888888
Q ss_pred hHHHHHHHHHH
Q 003150 772 NVNKIRRLMKE 782 (844)
Q Consensus 772 ~a~~~~~~m~~ 782 (844)
+|..-++...+
T Consensus 359 ~AI~dye~A~e 369 (504)
T KOG0624|consen 359 DAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHh
Confidence 88876665543
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=5.1e-07 Score=57.37 Aligned_cols=33 Identities=39% Similarity=0.640 Sum_probs=25.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003150 581 SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ 613 (844)
Q Consensus 581 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 613 (844)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777788888888888888777764
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=1.9e-05 Score=89.11 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=118.6
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHH
Q 003150 615 KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYA 692 (844)
Q Consensus 615 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 692 (844)
.+...+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+++++|...+++... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577888889999999999999999999999 899986 666777889999999999999998865 456 688888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 693 CMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.+..++...|++++|.++|++. ...|+ ..+|..+..++...|+.+.|..+++++++...+-...|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 9999999999999999999998 33455 68899999999999999999999999999876655443
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=3.2e-05 Score=88.38 Aligned_cols=198 Identities=11% Similarity=0.141 Sum_probs=134.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVFDMMQRK--------QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF 655 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 655 (844)
.+...|-..+......++++.|++++++.... -...|.++++.--..|.-+...++|+++.+ +.--...|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence 34455566666666777777777777765531 234677777777777777777777777776 33334567
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 003150 656 LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD---AGVWGTLLGACR 731 (844)
Q Consensus 656 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~ 731 (844)
..|..-|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-++|.++++++ ..-|. .....-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 7777777777777777777777777655 44556777777777777777777777665 33333 344444555566
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
++||.+.+..+++.++.-.|.....|..+...-...|..+.+..++++....++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 777777777777777777777777777777777777777777777777766554
No 112
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=8.6e-05 Score=76.10 Aligned_cols=219 Identities=11% Similarity=0.075 Sum_probs=144.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCG- 600 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g- 600 (844)
+-..+...++.++|+.+..++.+. .|+..| +|+....++.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~~L~~ 86 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLEALDA 86 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHHHcch
Confidence 334455566777777777777653 344322 2222223333445
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHH
Q 003150 601 NLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHL--KDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 601 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
++++++..++.+.+ ++..+|+...-.+.+.|+. ++++.+++++++ ..|+. .+|.....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46777777776553 3455676555555555553 677888888887 45544 5777777778888889999998
Q ss_pred HHHhHhhcCCCC-CchHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc----CCHHHHH
Q 003150 675 FHCMTEEYGIPA-RMEHYACMVDLFGRA---GR----LNKALETINSM-PFAPD-AGVWGTLLGACRVH----GNVELAE 740 (844)
Q Consensus 675 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~----g~~~~a~ 740 (844)
++.+.+. .| +...|+....++.+. |. .++++++..++ ...|+ ...|+.+.+.+... ++...|.
T Consensus 165 ~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 165 CHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 8888773 33 455566555555444 22 34677777554 55665 58899988888774 3446688
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHhcC------------------CcchHHHHHHHHH
Q 003150 741 VASSHLFDLDPQNSGYYVLLSNIHADAG------------------QWGNVNKIRRLMK 781 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g------------------~~~~a~~~~~~m~ 781 (844)
....+++..+|+++-+...|+.+|+... ..++|.++.+.+.
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8889999999999999999999998743 2356777777763
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=9.6e-05 Score=79.44 Aligned_cols=217 Identities=13% Similarity=0.136 Sum_probs=176.9
Q ss_pred CCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHH
Q 003150 480 GLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALS 559 (844)
Q Consensus 480 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 559 (844)
+++|-...-..+...+.+.|-...|..+|+++ ..|...|.+|...|+..+|.++..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34455555667888899999999999999986 5688889999999999999999888877 4789999999999
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHH
Q 003150 560 ACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRK---QEAAWNSMIAAYGCHGHLKDS 636 (844)
Q Consensus 560 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 636 (844)
...+..-++.|.++.+..... ....+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 998888999999988876432 1112222233468999999999865542 456898888889999999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 637 LALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 637 ~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
.+.|..... ..||.. .|+.+-.++.+.|+-.+|...+.+..+ .+ .-+...|...+-...+.|.+++|++.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988 789885 899999999999999999999999987 44 444556777777888999999999999887
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=2.6e-05 Score=73.69 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=64.2
Q ss_pred HHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 003150 658 IISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGN 735 (844)
Q Consensus 658 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~ 735 (844)
+-.++...|+-+.+..+...... ..+.+.+.....+....+.|++.+|...+.+. +-.||...|+.+..+|-+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344455555555544444322 11223333444555555555555555555555 233445555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
++.|...+.+++++.|+++.++..|+..|.-.|+.++|..++.....
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555554443
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=6.6e-06 Score=74.00 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=87.6
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 684 IPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 684 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
+.|+ .+..+...+...|++++|.+.++.. ...| +...|..+..+|...|+++.|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3444 4667888999999999999999988 5555 4689999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHcC
Q 003150 762 NIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 762 ~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
.++...|+.++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998776543
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=6.7e-05 Score=71.50 Aligned_cols=156 Identities=10% Similarity=0.157 Sum_probs=116.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEA 670 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~ 670 (844)
-+-.|.+.|+++.+..-.+.+..+. ..+...++.++++..+++..+ ..|+. ..|..+...+...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3456777788777654443322211 012235677888888888887 34554 578888888999999999
Q ss_pred HHHHHHHhHhhcCCCC-CchHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003150 671 GIHYFHCMTEEYGIPA-RMEHYACMVDLF-GRAGR--LNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASS 744 (844)
Q Consensus 671 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 744 (844)
|...|+...+ +.| ++..+..+..++ .+.|+ .++|.+++++. ...|+ ..++..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998865 456 688888888864 67787 59999999998 55665 5788888888999999999999999
Q ss_pred HhhcCCCCCCchHHHH
Q 003150 745 HLFDLDPQNSGYYVLL 760 (844)
Q Consensus 745 ~~~~~~p~~~~~~~~l 760 (844)
++++++|.+..-+..+
T Consensus 169 ~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 169 KVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhhCCCCccHHHHH
Confidence 9999998877665444
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=4e-05 Score=76.27 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=129.1
Q ss_pred CChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hH---HH
Q 003150 549 HDCMSLSAALSACANLHALHYGKEIHSLMIKDSCR-S-DNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQ-EA---AW 620 (844)
Q Consensus 549 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~~ 620 (844)
.....+......+...|+++.|...++.+.+.... | ....+..+...|.+.|++++|...++.+.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777777889999999999999998876422 1 234667788999999999999999998864 22 22 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHH
Q 003150 621 NSMIAAYGCH--------GHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHY 691 (844)
Q Consensus 621 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 691 (844)
..+..++... |++++|.+.|+++.. ..|+.. .+..+..... ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HHH---------HHH
Confidence 5666666654 789999999999998 467654 2222211110 000 000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 692 ACMVDLFGRAGRLNKALETINSM----PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
..+.+.+.+.|++++|...+++. |..|. ...|..+..++...|+.++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677888999999999888887 32333 478888889999999999999988887766653
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=6.9e-05 Score=77.10 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=56.9
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003150 663 GHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAE 740 (844)
Q Consensus 663 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 740 (844)
...|+.++|+..++.+... .+.|+......++++.+.|+.++|.+.++++ ...|+ ...|-.+..++.+.|+.++|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3445555555555554431 2223444444555555555555555555554 34444 344445555555555555555
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 741 VASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
..++..+.-+|+|+..|..|+..|...|+-.+|...+.
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 55555555555555555555555555444444444333
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00054 Score=65.55 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHH
Q 003150 397 CRDVKMACKVFKENTA-ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCY 475 (844)
Q Consensus 397 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 475 (844)
.+++..+..+.+..+. .+..+.+.......+.|++++|++-|+...+-+---....|+..+ +..+.++...|.....+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 4555556666665552 334444444444456666666666666665543222334455444 33345566666666666
Q ss_pred HHHhCCCCCcc---------------------chHHHHH-------HHHhcCCHHHHHHHHHhcCCC-----ChHhHHHH
Q 003150 476 ILKNGLDGKCH---------------------VGSAITD-------MYAKCGRLDLAYKIFKRMSEK-----DVVCWNSM 522 (844)
Q Consensus 476 ~~~~g~~~~~~---------------------~~~~li~-------~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~l 522 (844)
+++.|+...+. .-++++. .+.+.++.+.|.+.+-.|+.+ |++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 66655432110 0122222 345667777777777777643 55665443
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSL 576 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 576 (844)
.-.- -.+++.+..+-++-+..... -...||..++-.|++..-++.|-.++.+
T Consensus 284 Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 284 ALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3221 23344444444444444432 3445777777777777777776666544
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=3.8e-05 Score=82.44 Aligned_cols=236 Identities=16% Similarity=0.084 Sum_probs=141.3
Q ss_pred CCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003150 380 VPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPA 459 (844)
Q Consensus 380 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 459 (844)
++|-...-..+...+.+.|-...|..+|++ ...|...|.+|+..|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 455555666777888888888888888877 34677788888888888888888777766 35666666555544
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHH
Q 003150 460 CADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLF 539 (844)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 539 (844)
..+..- +++|.++++....+--..|+ ....+.++++++.+.|
T Consensus 467 ~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~---~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 467 LHDPSL-----------------------------------YEKAWELSNYISARAQRSLA---LLILSNKDFSEADKHL 508 (777)
T ss_pred ccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhc---cccccchhHHHHHHHH
Confidence 333333 33444443332221001111 1112245555555555
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C
Q 003150 540 RQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-Q 616 (844)
Q Consensus 540 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~ 616 (844)
+.-.+.. +.-..+|-.+.-++.+++++..|.+.|..... | +
T Consensus 509 e~sl~~n------------------------------------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 509 ERSLEIN------------------------------------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHhhcC------------------------------------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 5443321 11233444455555666777777777765543 3 4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
..+||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+......|.+++|++.+.++........+..+..-++.
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 5678888888888888888888888887755 233345555555667778888888887777553333334444444443
Q ss_pred H
Q 003150 697 L 697 (844)
Q Consensus 697 ~ 697 (844)
.
T Consensus 632 ~ 632 (777)
T KOG1128|consen 632 T 632 (777)
T ss_pred H
Confidence 3
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=8.4e-05 Score=70.37 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC
Q 003150 590 SVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG 666 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 666 (844)
..+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++.... -+||..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 4455555566666666666655432 34555666677777777777777777777663 2445567777777777777
Q ss_pred CHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003150 667 QVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSMPFA--PDAGVWGTLLGACRVHGNVELAEVAS 743 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~ 743 (844)
+.++|..-|.+..+ +.| ++..++.|.-.|.-.|+++.|..++...-.. -|..+-..|.-+....|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777655 344 4556677777777777777777777766222 24566666666667777777777666
Q ss_pred HH
Q 003150 744 SH 745 (844)
Q Consensus 744 ~~ 745 (844)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 55
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.00016 Score=81.77 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=119.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-H
Q 003150 581 SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF-L 656 (844)
Q Consensus 581 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~ 656 (844)
....+...+-.|.......|..++|..+++...+ | +...+..++.++.+.+++++|+..+++... ..|+..+. .
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4566788888899999999999999999998875 4 566788899999999999999999999999 67888654 4
Q ss_pred HHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003150 657 AIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLG 728 (844)
Q Consensus 657 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 728 (844)
.+..++.+.|++++|..+|+++.. ..+.+...+..+..++-..|+.++|...|++. ...|.+..|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 455578899999999999999976 23335788999999999999999999999998 34455555555544
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=1.5e-05 Score=70.14 Aligned_cols=96 Identities=7% Similarity=-0.049 Sum_probs=85.0
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
+.+..-.+...+...|++++|..+|+-. .+.|. ..-|..|...|...|+++.|+..|.+++.++|++|.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666777888999999999999988 55665 588999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHH
Q 003150 765 ADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 765 ~~~g~~~~a~~~~~~m~~ 782 (844)
...|+.++|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999986654
No 124
>PLN02789 farnesyltranstransferase
Probab=98.17 E-value=0.00021 Score=73.34 Aligned_cols=183 Identities=11% Similarity=0.113 Sum_probs=135.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCC
Q 003150 593 IDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHG-HLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQ 667 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~ 667 (844)
-..+.+.++.++|....+.+.+ .+..+|+..-..+...| ++++++..++++.+. .|+. .+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 3344556788888888887765 34567777767777777 689999999999984 5555 466655445555665
Q ss_pred --HHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----
Q 003150 668 --VEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVH---GN---- 735 (844)
Q Consensus 668 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~---- 735 (844)
.+++..+++.+.+ ..| +...|....-++.+.|++++|++.++++ ...| +..+|+.....+... |.
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3677888888865 455 6788888889999999999999999998 4444 468888877666554 22
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc----CCcchHHHHHHHH
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLLSNIHADA----GQWGNVNKIRRLM 780 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m 780 (844)
.+......++++.++|+|.++|..+..++... ++..+|.+.....
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 24677788899999999999999999999873 3445666665544
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=8.8e-05 Score=77.69 Aligned_cols=248 Identities=15% Similarity=0.138 Sum_probs=165.4
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhchhchHHH
Q 003150 495 YAKCGRLDLAYKIFKRMSEK---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACANLHALHYG 570 (844)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 570 (844)
+.+.|++.+|.-.|+..... +...|--|......+++-..|+..+++..+. .|+ ...+..|.-.|.+.|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHH
Confidence 56788899999999876653 5678888888888999888999999888774 455 34455555566667766667
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH-HHCCCC
Q 003150 571 KEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIK 649 (844)
Q Consensus 571 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~g~~ 649 (844)
...++..++..++--- + ...+.-+. |. + + ..+.......+..++|-++ .+.+.+
T Consensus 373 l~~L~~Wi~~~p~y~~-----l----~~a~~~~~----~~----~---~-----~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVH-----L----VSAGENED----FE----N---T-----KSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHhCccchh-----c----cccCcccc----cc----C---C-----cCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 6666666554322100 0 00000000 00 0 0 0011111222334444444 344534
Q ss_pred CCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHH
Q 003150 650 PDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTL 726 (844)
Q Consensus 650 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l 726 (844)
+|......|.-.|.-.|.+++|...|+.+.. ++| |...|+-|+..++...+.+||+..|++. .++|.. .++..|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 5555555555558888999999999998865 577 5778999999999999999999999888 788884 788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCC-----C-----CchHHHHHHHHHhcCCcch
Q 003150 727 LGACRVHGNVELAEVASSHLFDLDPQ-----N-----SGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 727 l~~~~~~g~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~y~~~g~~~~ 772 (844)
.-.|...|.+++|...+-.++.+.+. + ..+|..|=.+....++.|-
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 88999999999999999888887664 1 1356666556666666553
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00037 Score=71.93 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS-ACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACM 694 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 694 (844)
...+-...-.+...|++++|+..+++++. -.||..-|..+.. .+...++.++|.+.++.+.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 34444455566788999999999999988 5788877666555 68999999999999999966 5665 6666788
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 695 VDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
..+|.+.|++.+|..+++.. ..+-|+..|..|..+|...||..++..+. +..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 99999999999999999988 34455799999999999999998887654 446788899999
Q ss_pred HHHHHHHHHHcC
Q 003150 773 VNKIRRLMKERG 784 (844)
Q Consensus 773 a~~~~~~m~~~~ 784 (844)
|....+..+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999888777654
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=4.2e-05 Score=79.81 Aligned_cols=121 Identities=11% Similarity=0.076 Sum_probs=94.0
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 003150 656 LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVH 733 (844)
Q Consensus 656 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 733 (844)
.+|+..+...+++++|+.+|+++.+. .|+ ....++..+...++-.+|.+++++. ..+.|...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 44555666677788888888877653 243 4555777777777777888887776 2233567777777778889
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 734 GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
++.+.|+.+++++.++.|++...|..|+.+|...|+|++|.-....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998887664
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=2.9e-05 Score=69.54 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
......++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555566666666666666666665 3333 34566666666666677777777777777777777777777777777
Q ss_pred hcCCcchHHHHHHHHHH
Q 003150 766 DAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 766 ~~g~~~~a~~~~~~m~~ 782 (844)
..|++++|.+.++...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777776665544
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=4.8e-05 Score=73.37 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=75.6
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 738 (844)
..+.+++.+|+..|..+++ +.| |+..|..-..+|.+.|.++.|++-.++. .+.|.. .+|..|.-++...|+++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 5566778888888877755 565 5666666677888888888888777766 666663 788888888888888888
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 739 AEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
|++.|+++++++|++..+...|..+-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 888888888888888876666654433
No 130
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.08 E-value=0.00088 Score=77.21 Aligned_cols=221 Identities=18% Similarity=0.206 Sum_probs=168.2
Q ss_pred CCh-hhHHHHHHHHhcccchHHHHHHHHHHHHh-CCC---CCccchHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hHhHH
Q 003150 448 PNT-VTLSSILPACADLAALKLGKELHCYILKN-GLD---GKCHVGSAITDMYAKCGRLDLAYKIFKRMSEK-D-VVCWN 520 (844)
Q Consensus 448 p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~ 520 (844)
||+ ..|...|.-....++.+.|+.+.+++++. ++. .-..+|.+++++-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 35666666677778888888888777654 222 12356778888888888888888999988763 3 45688
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhc
Q 003150 521 SMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSC-RSDNIAESVLIDLYAKC 599 (844)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~ 599 (844)
.|...|.+.+.+++|.++++.|.+. +.-....|...+....+...-+.|..++..+.+.-. ........-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999875 235667788888888888888888888888876522 23556667778888899
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHH
Q 003150 600 GNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQVE 669 (844)
Q Consensus 600 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~ 669 (844)
|+.+.++.+|+.... +....|+..|..-.++|+.+.+..+|++.+..++.|-. ..|...|.-=...|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999998775 35778999999999999999999999999998888766 35555555444445433
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=5.9e-06 Score=53.57 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh
Q 003150 214 VLWNVMLNGYVTCGESDNATRAFKEMRISETKPNS 248 (844)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 248 (844)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00093 Score=62.82 Aligned_cols=163 Identities=15% Similarity=0.225 Sum_probs=113.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQRK--Q---EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG 666 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 666 (844)
++-+...+|+.+.|..+++++... + +.-..+ .-+-..|++++|+++++.+++.. +.|.+++..=+...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 334445567777777777765532 1 112222 22456788889999999888864 445567777777777778
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHH
Q 003150 667 QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHG---NVELAEV 741 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~ 741 (844)
+.-+|++-+....+ .+..|.+.|.-+.++|...|++++|.=-++++ -+.| ++..+..+...+...| |.+.|..
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888777 36668888999999999999999998888887 2233 3455555655555444 7788999
Q ss_pred HHHHhhcCCCCCCchHHH
Q 003150 742 ASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 742 ~~~~~~~~~p~~~~~~~~ 759 (844)
.+++++++.|.+.-.+.-
T Consensus 213 yy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHhChHhHHHHHH
Confidence 999999999966554443
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=8.8e-05 Score=66.38 Aligned_cols=115 Identities=12% Similarity=0.176 Sum_probs=89.0
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 003150 639 LFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PF 716 (844)
Q Consensus 639 l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 716 (844)
.|++.+. ..|+.. ....+...+...|++++|.+.|+.+... .+.++..+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 566553 4555666788889999999999888662 2336778888899999999999999888877 44
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 717 APD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 717 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.|+ ...|..+...+...|+.+.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 454 67788888888899999999999999999999887644
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=8.6e-06 Score=52.76 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 003150 113 LPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDN 147 (844)
Q Consensus 113 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 147 (844)
++||++|++|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.00063 Score=77.84 Aligned_cols=154 Identities=9% Similarity=0.091 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACG 663 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 663 (844)
..+..+..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++++.+.+.. +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 3455566666666666666666665553 3455566666666655 666666666555442 33
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003150 664 HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVAS 743 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 743 (844)
...++.++.++|..+.. ..+.+...+.-+...... ..+..--..+|-.+-.-|....+++.+..++
T Consensus 181 ~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 34455555555555544 111122222222111111 1112222345555666677788999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 744 SHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 744 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
+.+++.+|+|..+..-|+..|. +++.+
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 9999999999998888888877 44444
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00021 Score=74.65 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhC
Q 003150 588 AESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAG 666 (844)
Q Consensus 588 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g 666 (844)
....|+..+...++++.|.++|+++.+.+...+-.++..+...++-.+|++++++.++. .| |...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456777778899999999999998877777777888888899999999999999874 45 4344554555688999
Q ss_pred CHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 003150 667 QVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSMPFAP 718 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 718 (844)
+++.|+++.+++.+ ..| +..+|..|+.+|...|++++|+..++.+|..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999866 566 57899999999999999999999999997544
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0092 Score=56.84 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----hCCH
Q 003150 593 IDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH----AGQV 668 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~ 668 (844)
...|...|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+ + -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 344555666666665555422 112111112233444455555555555554 1 233344434333322 2344
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 669 EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
.+|.-+|++|.+ ..+|++.+.+-+.-+....|++++|..+++..
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 455555555533 23344444444444444444444444444443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0004 Score=65.23 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=139.5
Q ss_pred cCCHHHHHHHHHhcCC--------CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhhhCCH
Q 003150 599 CGNLDFARTVFDMMQR--------KQE-AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS-ACGHAGQV 668 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~ 668 (844)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++..+ + |...-...+-. -+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888887753 222 24555666777889999999999999885 4 66643332222 25668999
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003150 669 EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEVASSHL 746 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 746 (844)
++|+++++.+.++ -+.|..+|---+-+.-..|+.-+|++-+.+. .+..|...|..|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999875 2336677777777777888888888877776 56788999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHhcCCcc---hHHHHHHHHHH
Q 003150 747 FDLDPQNSGYYVLLSNIHADAGQWG---NVNKIRRLMKE 782 (844)
Q Consensus 747 ~~~~p~~~~~~~~l~~~y~~~g~~~---~a~~~~~~m~~ 782 (844)
+=+.|-++-++..|+.++.-.|-.+ -|.+++.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776544 45556655444
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.8e-05 Score=50.81 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003150 213 CVLWNVMLNGYVTCGESDNATRAFKEMRISETKP 246 (844)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 246 (844)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2e-05 Score=50.58 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 003150 112 SLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRP 145 (844)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 145 (844)
+.+||.+|.+|++.|+++.|..+|++|.+.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999988887
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00041 Score=62.72 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC--chHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR--MEHYA 692 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 692 (844)
.|..++..+. .++...+...++++... .|+. .....+...+...|++++|...|+.+... ...|. .....
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 4444554442 55556665566666553 2222 12222333455556666666666665552 21111 11223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003150 693 CMVDLFGRAGRLNKALETINSMPF-APDAGVWGTLLGACRVHGNVELAEVASSHL 746 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 746 (844)
.|..++...|++++|+..++..+. ...+..+..+...+...|+.+.|+..|+++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 345555555555555555544421 112233333444445555555555555443
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.83 E-value=0.062 Score=56.52 Aligned_cols=161 Identities=12% Similarity=0.120 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMV 695 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 695 (844)
..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++.-+| .++.+-|.++|+.=.+++|-. ++--.+.+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHH
Confidence 4578888888888888899999999999998888 4557777777555 578899999999887755444 45556788
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----chHHHHHHHHHh
Q 003150 696 DLFGRAGRLNKALETINSM---PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS----GYYVLLSNIHAD 766 (844)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~ 766 (844)
+-+.+.|+-..|..+|++. .+.|| ..+|..++.--..-||+..+..+-++.....|.+- ..-.++..-|.-
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 9999999999999999998 23455 48999999999999999999998888776666221 122344455666
Q ss_pred cCCcchHHHHHHHH
Q 003150 767 AGQWGNVNKIRRLM 780 (844)
Q Consensus 767 ~g~~~~a~~~~~~m 780 (844)
.+....-..-++.|
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 66666555544444
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=2e-05 Score=63.43 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHH
Q 003150 701 AGRLNKALETINSM----PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKI 776 (844)
Q Consensus 701 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 776 (844)
.|++++|+.+++++ |..|+...|..+..++...|+++.|..++++ .+.+|+++....+++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666676666666 2222455666677777888888888888877 777777777777778888888888888887
Q ss_pred HHH
Q 003150 777 RRL 779 (844)
Q Consensus 777 ~~~ 779 (844)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.00098 Score=73.24 Aligned_cols=141 Identities=21% Similarity=0.150 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhh--------CCHHHHHHHHHHhHh
Q 003150 615 KQEAAWNSMIAAYGCH--G---HLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHA--------GQVEAGIHYFHCMTE 680 (844)
Q Consensus 615 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 680 (844)
.|...|...+.+.... + +..+|..+|++.++ ..||.. .+..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4666777777664332 2 36789999999998 688874 333332222111 122333343333322
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 681 EYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 681 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
......++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++..|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 1112334566777766666778888888888887 6667777787778888888888888888888888888877543
No 145
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.74 E-value=2.1e-05 Score=66.69 Aligned_cols=45 Identities=40% Similarity=0.676 Sum_probs=40.4
Q ss_pred CeeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHhcCcccCCCCccccccCC
Q 003150 790 GYSWIELNNITHLFVAADESHSESAQMLNILLPELEKEGYIPQPCLSMHLQALG 843 (844)
Q Consensus 790 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 843 (844)
||||+++ |.|++||.+||+. .+..++...||.|++..+.|+++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~-----~~~~~~~~~~~~~~~~~~~~~~~~e 46 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS-----ELINKMKEEGYVPDTKEVGHDVDEE 46 (116)
T ss_pred CCCccce----EEEEeCCCcCccH-----HHHHHHHHcCCcchhhhhCCCchhh
Confidence 7999988 9999999999998 6677888899999999999988763
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0079 Score=57.28 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=111.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChH
Q 003150 540 RQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR-KQEA 618 (844)
Q Consensus 540 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~ 618 (844)
+.+.......+......-...|.+.+++++|....... -+......=+..+.|..+++-|.+.++.|.+ .+..
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~ 170 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA 170 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 33333334444444444445567777777776655431 1222222334556678889999999999987 4556
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 003150 619 AWNSMIAAYGC----HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACM 694 (844)
Q Consensus 619 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 694 (844)
+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....+|...|++++|..+++....+ -..++++...+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 67767666543 34789999999999875 7899999999999999999999999999998774 23356677777
Q ss_pred HHHHHhcCCHHHHH-HHHHhC
Q 003150 695 VDLFGRAGRLNKAL-ETINSM 714 (844)
Q Consensus 695 ~~~~~~~g~~~~A~-~~~~~~ 714 (844)
+-+-...|...++. +.+.+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHH
Confidence 76666667655543 333333
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.0003 Score=61.19 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 003150 656 LAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLGA 729 (844)
Q Consensus 656 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 729 (844)
..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|.+.+++. ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445555555555555555544211111 1223344555555555555555555544 11222 2334444444
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
+...|+.+.|...++++++..|+++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 4455555555555555555555443
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00024 Score=58.64 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcC
Q 003150 691 YACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 768 (844)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 768 (844)
+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|+.+.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777778888888877776 33443 3566667777777788888888888888888888888888888888888
Q ss_pred CcchHHHHHHHHHH
Q 003150 769 QWGNVNKIRRLMKE 782 (844)
Q Consensus 769 ~~~~a~~~~~~m~~ 782 (844)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776543
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.73 E-value=0.09 Score=55.40 Aligned_cols=172 Identities=10% Similarity=0.142 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHCC-CCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 003150 532 PEEAIDLFRQMAIEG-VKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRS-DNIAESVLIDLYAKCGNLDFARTVF 609 (844)
Q Consensus 532 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 609 (844)
.+...+.++++...- +.|+ .+|...+...-+..-++.|+.+|..+.+.+..+ ++.+.++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 445555666665433 3333 456677777777788888999999998887666 88888888887774 6778888888
Q ss_pred HhcCC--CChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcC-
Q 003150 610 DMMQR--KQEA-AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYG- 683 (844)
Q Consensus 610 ~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 683 (844)
+.-.+ +|.. --+.-+.-+...|+-..|..+|++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86543 3433 3455667777888888888899988888777776 4788888888888888888887777665443
Q ss_pred -CCCCchHHHHHHHHHHhcCCHH
Q 003150 684 -IPARMEHYACMVDLFGRAGRLN 705 (844)
Q Consensus 684 -~~p~~~~~~~l~~~~~~~g~~~ 705 (844)
..|...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3444444555666666555443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.0014 Score=59.18 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=49.5
Q ss_pred hCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 003150 665 AGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA----GVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 738 (844)
.++.+.+...++.+.++++-.| .....-.+...+...|++++|.+.++.. ...||. ..+..|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444545444555544322221 1222333445555555555555555554 111222 223333444444555555
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 739 AEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
|+..++.. .-.|-.+.++.+++.+|...|++++|...++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555331 2222233444455555555555555555443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.00042 Score=60.26 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC---CchHHHHH
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN---SGYYVLLS 761 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 761 (844)
.+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3455566666667777776666665 22232 2345555666666667777777777766666654 34566666
Q ss_pred HHHHhcCCcchHHHHHHHHHHc
Q 003150 762 NIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 762 ~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.+|...|++++|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666677777777666666544
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.71 E-value=0.024 Score=65.41 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 003150 553 SLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGH 632 (844)
Q Consensus 553 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 632 (844)
.+..+..+|.+.|..+++..+++.+++.. +.++.+.|-+...|+.. ++++|.+++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 34444444555555555555555555444 44556666666666666 777776665543 233555667
Q ss_pred hHHHHHHHHHHHHCCCCCCHH
Q 003150 633 LKDSLALFHEMLNNKIKPDHV 653 (844)
Q Consensus 633 ~~~A~~l~~~m~~~g~~pd~~ 653 (844)
+.++.++|.++.. ..|+.+
T Consensus 185 ~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 185 YVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred chHHHHHHHHHHh--cCcccc
Confidence 7777777777766 445543
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=7.6e-05 Score=57.42 Aligned_cols=64 Identities=20% Similarity=0.171 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcC-CcchHHHHHHHHHH
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG-QWGNVNKIRRLMKE 782 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 782 (844)
++.+|..+...+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999998876543
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.66 E-value=0.17 Score=56.75 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=55.1
Q ss_pred hHHHHHHHHhcCCHHH---HHHHHHhcCCC---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003150 488 GSAITDMYAKCGRLDL---AYKIFKRMSEK---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSAC 561 (844)
Q Consensus 488 ~~~li~~~~~~g~~~~---A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 561 (844)
.+.|++++-+.++... |.-+++.-... |..+--.+|..|+-.|-+..|.++|+.|--+.++-|...+..+ +-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHH
Confidence 3677788888777653 44444443332 4444455778888888888888888888777777776555432 233
Q ss_pred hchhchHHHHHHHHHHH
Q 003150 562 ANLHALHYGKEIHSLMI 578 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~ 578 (844)
...|.+..+...+....
T Consensus 518 ~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHL 534 (932)
T ss_pred HhcccchhHHHHHHHHH
Confidence 44455555555544443
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.7e-05 Score=47.19 Aligned_cols=31 Identities=32% Similarity=0.598 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003150 214 VLWNVMLNGYVTCGESDNATRAFKEMRISET 244 (844)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 244 (844)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999999888764
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.4e-05 Score=46.94 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 003150 113 LPWNRMIRVFAKMGLFRFALLFYFKMLSCGI 143 (844)
Q Consensus 113 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 143 (844)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998874
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00025 Score=69.08 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=90.6
Q ss_pred CC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-C--CHHHHHHHHHHhhcCCCCCCchHH
Q 003150 685 PA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVH-G--NVELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 685 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
.| |.+.|..|...|.+.|+.+.|..-|.+. .+.|| +..+..+..++..+ | +..++..++++++.++|+|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 7999999999999999999999999888 55554 67777777775443 2 567899999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCccCCCe
Q 003150 759 LLSNIHADAGQWGNVNKIRRLMKERGVQKIPGY 791 (844)
Q Consensus 759 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~ 791 (844)
+|+-.+...|++.+|...++.|.+......|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999999988765554544
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.63 E-value=0.19 Score=56.41 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=104.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhh--ccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHH
Q 003150 226 CGESDNATRAFKEMRISETKPNSVTFACILSVCA--VEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDAL 303 (844)
Q Consensus 226 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 303 (844)
.+++..|+.....+.++ .||. .|..++.++. +.|..++|..+++.....+.. |..+...+-..|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34455555555554433 2332 2233333332 445555555555544444433 5555566666666666666666
Q ss_pred HHhccCCC--CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccc----------cchhhHHH
Q 003150 304 KLFELMPQ--INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVA----------SIKQGKEI 371 (844)
Q Consensus 304 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~a~~~ 371 (844)
.+++...+ |+......+..+|++.+.+.+-.+.--+|-+ ...-+.+.|.++++...+.- -+..|...
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 66666554 3322233334455555544433322222222 12233445555544433221 11234444
Q ss_pred HHHHHHhC-CCCchHHHHHHHHHhhhCCCHHHHHHHHHh-----CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 003150 372 HGYIIRNG-VPLDAFLKSALIDIYFKCRDVKMACKVFKE-----NTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEK 445 (844)
Q Consensus 372 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (844)
.+.+++.+ ...+..=.-.-.......|+.++|..++.. ....+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 45544443 111111111222334556778888887732 333444555566677777788888888887777765
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.00012 Score=55.44 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 726 LLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999888877543
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.00076 Score=71.03 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=73.5
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNV 736 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 736 (844)
..+...|++++|+..|+.+.+ ..| +...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 345566777777777777755 234 4566667777777777777777777776 44554 46677777778888888
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHhc
Q 003150 737 ELAEVASSHLFDLDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 767 (844)
+.|+..++++++++|+++.+...+..+....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888887777776664433
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0018 Score=60.47 Aligned_cols=130 Identities=13% Similarity=0.218 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHH
Q 003150 616 QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD--HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYA 692 (844)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 692 (844)
....+..+...|...|++++|+..|++..+....|. ...+..+...+.+.|++++|..++++..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345667777777888888888888888876432222 24566666677788888888888877765 234 455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 693 CMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
.++.++...|+...+..-+... ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777665554332221 113677889999999999987 5555555555554
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0011 Score=66.82 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=98.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhhhCCHHHHHHHHHHhHhhcCCCCCch-------------
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS--ACGHAGQVEAGIHYFHCMTEEYGIPARME------------- 689 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~------------- 689 (844)
.++...|++++|...--..++ +.+... +..+++ ++...++.+.|...|++... +.|+-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 455667777777776666555 233222 222222 34456677777777776532 344311
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-PFAP-----DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
.+.-=.+-..+.|++.+|.+.+... .+.| ++..|.....+..+.|+.++|+.--+.+++++|.-..+|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1111234456788888888888777 4444 345566666666778888888888888888888888888888888
Q ss_pred HHhcCCcchHHHHHHHH
Q 003150 764 HADAGQWGNVNKIRRLM 780 (844)
Q Consensus 764 y~~~g~~~~a~~~~~~m 780 (844)
|...++|++|.+-++..
T Consensus 331 ~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888866544
No 163
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.12 Score=52.12 Aligned_cols=266 Identities=18% Similarity=0.171 Sum_probs=166.5
Q ss_pred cCCHHHHHHHHHhcC---CCChHhHHHHHHH--HHHcCCchHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhchhchHHH
Q 003150 498 CGRLDLAYKIFKRMS---EKDVVCWNSMITR--YSQNGKPEEAIDLFRQMAIEGVKHD--CMSLSAALSACANLHALHYG 570 (844)
Q Consensus 498 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a 570 (844)
.|+-..|.++-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... |. ..-+..|.-..-+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 455555655544332 2233333333322 23467888888888888642 21 11223333334566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChH--HHHHHHHHHH---hcCChHHHHHHH
Q 003150 571 KEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ-----RKQEA--AWNSMIAAYG---CHGHLKDSLALF 640 (844)
Q Consensus 571 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~ 640 (844)
+++-+..-..- +.-.....+.+...+..|+++.|+++.+.-. ++++. .--.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77766655432 2234566778888999999999999988644 34432 2223333222 123566677766
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 003150 641 HEMLNNKIKPDHVTF-LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM----P 715 (844)
Q Consensus 641 ~~m~~~g~~pd~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 715 (844)
.+..+ +.||.+.- ..-..++.+.|++.++-.+++.+- ...|.+..+...+ +.|.|+. +.+-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 66665 78887643 334457999999999999999984 4678777654333 3455652 22222222 4
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc-CCcchHHHHH
Q 003150 716 FAPDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA-GQWGNVNKIR 777 (844)
Q Consensus 716 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~ 777 (844)
.+|+. ....++..+....|++..|..-.+.+....|.. ++|.+|+.+-... |+-+++....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHH
Confidence 46764 667777888889999999999999999999974 6888898886554 7666554433
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.00043 Score=72.87 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=79.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcc
Q 003150 694 MVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWG 771 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 771 (844)
-+..+...|++++|++.++++ ...|+ ...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 355667889999999999998 55565 5788888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHc
Q 003150 772 NVNKIRRLMKER 783 (844)
Q Consensus 772 ~a~~~~~~m~~~ 783 (844)
+|...+++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 999998876543
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.49 E-value=0.016 Score=61.79 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=72.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG 671 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 671 (844)
-..++...|+.++|..+. ..+|-.+-+.++-+++.. .+..+...+..-+.+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 445566677777665543 445555555555554432 2333444444445556666778
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHH----------HHHHHHhcCCHHHH
Q 003150 672 IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP-FAPDAG-VWGT----------LLGACRVHGNVELA 739 (844)
Q Consensus 672 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~----------ll~~~~~~g~~~~a 739 (844)
-++|.+|-. ...++++....|+|+||..+-++.| +.||.. -|.. .-.++.+.|+.++|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 888888744 3567888888999999999988884 455541 1211 12334455555555
Q ss_pred HHHHHHh
Q 003150 740 EVASSHL 746 (844)
Q Consensus 740 ~~~~~~~ 746 (844)
.++++++
T Consensus 837 ~~vLeQL 843 (1081)
T KOG1538|consen 837 VQVLEQL 843 (1081)
T ss_pred HHHHHHh
Confidence 5555554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0023 Score=64.96 Aligned_cols=138 Identities=11% Similarity=0.177 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISA-CGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
.+|..++....+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888888888888888887542 2233444444433 33356677799999999885 4456677888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHH
Q 003150 697 LFGRAGRLNKALETINSM-PFAPDA----GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
.+.+.|+.+.|..+|++. ..-|.. .+|...+.--..+|+.+....+.+++.+..|++.....
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999999988 333333 59999999999999999999999999999888655433
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.13 Score=55.56 Aligned_cols=303 Identities=14% Similarity=0.137 Sum_probs=146.4
Q ss_pred ccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCC-----hhhHHHHHHHHHhcCCchHHHHH
Q 003150 363 ASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAAD-----VVMFTAMISGYVLNGISHEALEK 437 (844)
Q Consensus 363 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~ 437 (844)
|.+++|++++-.+-++. .-|.++.+.|++-...++++.....+ ...|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665554443 23566677777777777776643321 24677777777777777777776
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChH
Q 003150 438 FRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVV 517 (844)
Q Consensus 438 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 517 (844)
|..-... ...+.++.+..+++.-+.+ ...++.+....-.+.+++...|.-++|.+.|-+-..|..
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka- 883 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA- 883 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-
Confidence 6543211 1122333333222222211 123445555666677777777777777777665554432
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003150 518 CWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYA 597 (844)
Q Consensus 518 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 597 (844)
-+..|...+++.+|.++-+..+- |...|+ +.- .+.+++. +.. ..--|..+.
T Consensus 884 ----Av~tCv~LnQW~~avelaq~~~l----~qv~tl---iak--------~aaqll~---~~~-------~~eaIe~~R 934 (1189)
T KOG2041|consen 884 ----AVHTCVELNQWGEAVELAQRFQL----PQVQTL---IAK--------QAAQLLA---DAN-------HMEAIEKDR 934 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhccc----hhHHHH---HHH--------HHHHHHh---hcc-------hHHHHHHhh
Confidence 24456666677777776655432 222222 111 1111111 100 012355677
Q ss_pred hcCCHHHHHHHHHhcCCCChH---HHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHH
Q 003150 598 KCGNLDFARTVFDMMQRKQEA---AWNSM----IAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEA 670 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~---~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 670 (844)
+.|+.=+|-+++.+|.+.... -|-.+ +-+-.-..+..++++-.++....|...|... +..+|...+
T Consensus 935 ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~ 1007 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAE 1007 (1189)
T ss_pred hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhh
Confidence 777777777777776642111 00000 0000111123334444444444443333221 122233333
Q ss_pred HHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 003150 671 GIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM----PFAPDAGVWGTLLGA 729 (844)
Q Consensus 671 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~ 729 (844)
+-++.+..-. -....||-.|..-..+.|..+.|++.--.+ .+-|-..+|.-|.-+
T Consensus 1008 ~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1008 QSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 3333321111 112345556666667778888887654333 345555666555444
No 168
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=6.8e-05 Score=47.59 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.5
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHhcCCcchHH
Q 003150 743 SSHLFDLDPQNSGYYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 743 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 774 (844)
++++++++|+++.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.00097 Score=62.36 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSN 762 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 762 (844)
...+..++..+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334555666666666666666666655 22222 3567777777888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 003150 763 IHADAGQ 769 (844)
Q Consensus 763 ~y~~~g~ 769 (844)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8887776
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.44 E-value=0.0015 Score=53.70 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
|..+...+...|++++|+..+++..+. .|+. ..+..+...+...|++++|.++|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666655552 2322 334444444555555555555555543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.0011 Score=61.88 Aligned_cols=91 Identities=11% Similarity=-0.058 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSN 762 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 762 (844)
...|..++..+...|++++|...+++. ...|+ +.+|..+...+...|+.+.|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888777776 23232 3578888888899999999999999999999999998888898
Q ss_pred HHH-------hcCCcchHHHHHH
Q 003150 763 IHA-------DAGQWGNVNKIRR 778 (844)
Q Consensus 763 ~y~-------~~g~~~~a~~~~~ 778 (844)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 888 7788876655544
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00051 Score=52.00 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 694 MVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
++..+...|++++|.+.+++. ...|+ ...|..+...+...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999888 55675 57888888889999999999999999999999874
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00028 Score=54.06 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
.++..+...+...|+++.|...+++++..+|+++.++.++
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3333444444444444444444444444444444333333
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.33 E-value=0.019 Score=51.03 Aligned_cols=101 Identities=6% Similarity=0.004 Sum_probs=71.2
Q ss_pred HHhcC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC
Q 003150 609 FDMMQ-RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA 686 (844)
Q Consensus 609 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 686 (844)
+..+. ..+....-.+..-+...|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|..... +.|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ 100 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKI 100 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCC
Confidence 33444 34444555566667778888888888888777 666665 455566667777888888888887754 445
Q ss_pred -CchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 687 -RMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 687 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
++..+-.+..++...|+.++|.+-|+..
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5777777888888888888888777665
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0023 Score=62.07 Aligned_cols=100 Identities=13% Similarity=0.236 Sum_probs=82.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAG 702 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 702 (844)
+-..+.+++++|+..|.+.++ +.|+.. -|..-..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 345678999999999999999 777664 555667789999999999998888754 6774 788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003150 703 RLNKALETINSM-PFAPDAGVWGTLLGA 729 (844)
Q Consensus 703 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 729 (844)
++++|.+.|++. .+.|+..+|..=|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999988 889997766654443
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.29 E-value=0.28 Score=50.41 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHH
Q 003150 593 IDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGI 672 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 672 (844)
+.-+...|....|.++-.+..-|+..-|...+.+|+..|++++-.++... .-. ++-|...+.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCHHHHH
Confidence 33344455555555555555555555555555555555555544443221 111 244444555555555555555
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHH
Q 003150 673 HYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETI 711 (844)
Q Consensus 673 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (844)
.+...+ .+..-+.+|.+.|++.+|.+.-
T Consensus 258 ~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKI-----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhC-----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 554432 1133445555555555554443
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00024 Score=54.40 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...|+++.|+..++++++.+|+++.++..|+.+|...|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999866543
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.034 Score=56.67 Aligned_cols=213 Identities=13% Similarity=0.136 Sum_probs=107.7
Q ss_pred CHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHhchhchHHHHHHH
Q 003150 500 RLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDC-----MSLSAALSACANLHALHYGKEIH 574 (844)
Q Consensus 500 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~ 574 (844)
++++|..+|++ ....|...+++++|.+.|.+......+.+. ..|......+ +..+++.|..
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~-- 95 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIE-- 95 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHH--
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHH--
Confidence 56666666554 356777788888888887776432111110 1111111111 1123333333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHH----CCCC
Q 003150 575 SLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCH-GHLKDSLALFHEMLN----NKIK 649 (844)
Q Consensus 575 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~ 649 (844)
.+...++.|...|++..|-+++.. +...|... |++++|++.|++..+ .| .
T Consensus 96 -------------~~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 96 -------------CYEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp -------------HHHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred -------------HHHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 333445666777777766655443 45566666 778888877777654 22 2
Q ss_pred CCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC----Cc-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---
Q 003150 650 PDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA----RM-EHYACMVDLFGRAGRLNKALETINSM-PFAP--- 718 (844)
Q Consensus 650 pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--- 718 (844)
|.. .++..+...+...|++++|.++|+++....--.| +. .+|-..+-++...|+...|.+.+++. ...|
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 211 2455556667777788888888877765321111 11 22333444555667777777777765 2223
Q ss_pred -C--HHHHHHHHHHHHhc--CCHHHHHHHHHHhhcCCC
Q 003150 719 -D--AGVWGTLLGACRVH--GNVELAEVASSHLFDLDP 751 (844)
Q Consensus 719 -~--~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p 751 (844)
+ ......|+.+|... ..++.+..-+..+..++|
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 1 24555566665443 244555555555555544
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.00085 Score=52.20 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=44.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 728 GACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 728 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888888888888888888888887766544
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.48 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=14.6
Q ss_pred HHHHHHcCCchHHHHHHHHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAI 544 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~ 544 (844)
|.-+.+.|+.-.|-+++.+|.+
T Consensus 930 Ie~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhH
Confidence 3445667777777777777754
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.0052 Score=57.20 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD--HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYAC 693 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 693 (844)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++...+ +.| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566666666667777777777777665321221 13555566666667777777777666654 233 2344444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHhhcCCCCCC
Q 003150 694 MVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN-------VELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~ 754 (844)
+..++...|+.. ...|+ ++.|...++++++.+|++.
T Consensus 112 la~i~~~~~~~~-------------------------~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQA-------------------------IEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHH-------------------------HHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 444444222211 13333 3466677778888888653
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0031 Score=56.09 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=79.7
Q ss_pred CCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 683 GIPAR-MEHYACMVDLFGRAGRLNKALETINSM-PF-APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 683 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
|++++ .+..-...--+-..|++++|..+|.-+ -. .-+..-|..|...|...++++.|+..|..+..++++||.....
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44443 333333445556789999999888877 22 2345678888888888999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHH
Q 003150 760 LSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 760 l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.+.+|...|+.++|...+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999886654
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.16 E-value=0.0071 Score=66.61 Aligned_cols=133 Identities=12% Similarity=0.017 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHHHhhh-----CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc--------CCHHHHHHHHH
Q 003150 647 KIKPDHVTFLAIISACGHA-----GQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRA--------GRLNKALETIN 712 (844)
Q Consensus 647 g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 712 (844)
+...|...|..++.+.... +..+.|+.+|+++.+ ..|+ ...|..+..++... +++.++.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456678888888875432 347799999999976 5775 55566554444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 713 SM---P-FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 713 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+. + ...++.+|.++.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|...+++....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 53 2 2334577888777777789999999999999999994 789999999999999999999988766543
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.15 E-value=0.00099 Score=53.53 Aligned_cols=78 Identities=10% Similarity=0.311 Sum_probs=45.9
Q ss_pred cCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKP---DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLN 705 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 705 (844)
.|++++|+.+++++.+. .| +...+..+..++.+.|++++|..+++.. + ..| ++.....++.++.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHH
Confidence 46777777777777763 33 3344444666777777777777777662 1 222 2233334466777777777
Q ss_pred HHHHHHHh
Q 003150 706 KALETINS 713 (844)
Q Consensus 706 ~A~~~~~~ 713 (844)
+|++.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77776654
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.014 Score=59.58 Aligned_cols=142 Identities=16% Similarity=0.260 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhhh-CCHHHHHHHHHHhHhhcCCCCC----c
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLN----NKIKPDH--VTFLAIISACGHA-GQVEAGIHYFHCMTEEYGIPAR----M 688 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~--~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~ 688 (844)
|......|.+. ++++|+..+++..+ .| .|+. .++..+...|... |++++|+++|+...+-+..... .
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 33334444333 77777776666543 33 3333 2555666678888 9999999999998775433332 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch--H
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSMP---F-----APDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY--Y 757 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~ 757 (844)
.++.-++.++.+.|++++|.+++++.. . +++. ..+-..+-.+...||...|...+++....+|.-.+. +
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 566778899999999999999998871 1 1122 122222334556799999999999999999865433 4
Q ss_pred HHHHHH
Q 003150 758 VLLSNI 763 (844)
Q Consensus 758 ~~l~~~ 763 (844)
..+..+
T Consensus 236 ~~~~~l 241 (282)
T PF14938_consen 236 KFLEDL 241 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.09 E-value=0.13 Score=53.18 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=98.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---C----hHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQRK---Q----EAAWNSMIAAYGC---HGHLKDSLALFHEMLNNKIKPDHVTFLAIISA 661 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 661 (844)
++-.|....+++...++.+.+... + ...--..+-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466666677777776666542 1 1111122334445 77888888888886555556666676665554
Q ss_pred Hh---------hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHH----HHHHH---Hh-----C--CCCC
Q 003150 662 CG---------HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNK----ALETI---NS-----M--PFAP 718 (844)
Q Consensus 662 ~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-----~--~~~p 718 (844)
|- .....++|+..|.+. +.+.|+..+--.++.++..+|...+ ..++. .. - ....
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 32 123467788888766 5566765444445555555554222 22222 11 1 1234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
|--.+.+++.++.-.||.+.|.+++++++++.|..-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 456677899999999999999999999999987653
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.07 E-value=0.00096 Score=51.21 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCC
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHG-NVELAEVASSHLFDLDP 751 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 751 (844)
+..|..++..+...|++++|+..|++. ...|+ +.+|..+..++...| +.+.|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777788888888888888888777 45565 577888888888888 68999999999998887
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.74 Score=50.87 Aligned_cols=85 Identities=8% Similarity=-0.033 Sum_probs=44.3
Q ss_pred chhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCC---HHHHHHHHHhCCC--CChhhHHHHHHHHHhcC
Q 003150 355 FLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRD---VKMACKVFKENTA--ADVVMFTAMISGYVLNG 429 (844)
Q Consensus 355 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 429 (844)
+++-+...+.+..|.++-..+...-... ..++.....-+.+..+ -+-+..+-+++.. .+-++|..+...-...|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 3444455555666655554442211111 4555556666655532 2223333333333 45566777777777777
Q ss_pred CchHHHHHHHH
Q 003150 430 ISHEALEKFRW 440 (844)
Q Consensus 430 ~~~~A~~~~~~ 440 (844)
+.+-|..+++.
T Consensus 522 R~~LA~kLle~ 532 (829)
T KOG2280|consen 522 RFELARKLLEL 532 (829)
T ss_pred cHHHHHHHHhc
Confidence 77777776653
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.044 Score=49.21 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHH
Q 003150 648 IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD---AGV 722 (844)
Q Consensus 648 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~ 722 (844)
..|....-..|..+....|+..||...|++... |+-. |+...-.+..+....|+..+|...+++. ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 466666666777777778888888887777765 4333 5666666777777777888877777776 22222 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 723 WGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.-.+..++...|..+.|+..++.++.--|+ +..-...+...+++|+.++|..-...+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344556677788888888888888887775 45556667777888888877665544443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.0071 Score=51.69 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC---CCchHHHHHHHHH
Q 003150 694 MVDLFGRAGRLNKALETINSM---PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ---NSGYYVLLSNIHA 765 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 765 (844)
+..++-..|+.++|+.++++. +..++ ...+-.+.++++..|+.++|..++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666655 22221 245556666677777777777777777777676 5666666777777
Q ss_pred hcCCcchHHHHH
Q 003150 766 DAGQWGNVNKIR 777 (844)
Q Consensus 766 ~~g~~~~a~~~~ 777 (844)
..|++++|.+..
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 777777777644
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.99 E-value=0.2 Score=50.58 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=70.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 706 (844)
.|++++|.+-|+-|.. .|.. .-+..|.-...+.|..+.|+++-+... +.-|. +..+.+..+..+..|+|+.
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAA---EKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH---hhccCCchHHHHHHHHHHhcCChHH
Confidence 4555555555555544 2221 112223333344555555555555542 23343 3344555555556666666
Q ss_pred HHHHHHhC----CCCCCH--HHHHHHHHH---HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 003150 707 ALETINSM----PFAPDA--GVWGTLLGA---CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 707 A~~~~~~~----~~~p~~--~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 777 (844)
|+++++.. -+.++. ..--.|+.+ -....|...|.....+..++.|+-...-+.-+..+.+.|+.-++.++.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 66655544 233332 111122221 112234555556666666666666555555566666666666666655
Q ss_pred HHH
Q 003150 778 RLM 780 (844)
Q Consensus 778 ~~m 780 (844)
+.+
T Consensus 287 E~a 289 (531)
T COG3898 287 ETA 289 (531)
T ss_pred HHH
Confidence 544
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.016 Score=51.88 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=93.0
Q ss_pred HHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 676 HCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM---PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 676 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
++..++...-|+..+--.|...+.+.|+..||...+++. ++..|....-.+..+...-++...|...++++.+-+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 334444567788888888999999999999999999988 56778888999999999999999999999999999885
Q ss_pred --CCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 753 --NSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 753 --~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.|....+++..|+..|+..+|...++...+.
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5777889999999999999999988876653
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.95 E-value=0.0012 Score=45.14 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSN 762 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 762 (844)
.+|..+..++...|+++.|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999988864
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.93 E-value=0.0091 Score=60.58 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR-AGRLNKALETINSM--PFAPDAGVWGTLLGA 729 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 729 (844)
.+|..++..+.+.+..+.|+.+|..+.+. -.-+...|...+.+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999752 22245667777777555 45666699999998 455677899999999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCC---chHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNS---GYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+...||.+.|..++++++..-|.+. ..|..+...-...|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877655 57888888888999999999999888764
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.0064 Score=61.14 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHH---hHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-----CC---CCCHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHC---MTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-----PF---APDAG 721 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p~~~ 721 (844)
.|..|-+.|.-.|++++|+...+. +.+++|-.. ....++.+..++.-.|+++.|.+.++.. .+ .-.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555667788888765432 223355444 3456778888888888888888887765 11 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcC----C--CCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDL----D--PQNSGYYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
...+|.++|....+++.|+....+=+.+ + -....++..|++.|...|..+.|......
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6667888887777888888776554432 2 23345677888888888888888775543
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.0057 Score=60.80 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLG 728 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 728 (844)
|..-+......|++++|+..|+...+.+.-.+ .+..+..++.+|...|++++|...|+++ ...|+ ...|..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655421111 1234455666666666666666666555 11222 234444444
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 729 ACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 729 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
.+...|+.+.|...++++++..|+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 45556666666666666666666543
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.85 E-value=0.019 Score=60.59 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=89.5
Q ss_pred CCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHh--CCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC----CChHh
Q 003150 445 KIIPNTVTLSSILPACADLAALKLGKELHCYILKN--GLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE----KDVVC 518 (844)
Q Consensus 445 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~ 518 (844)
+.+.+...+..+++.+....+++.+..++...... ....-..+..++++.|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45567777888888888888888888777766655 3333345556888888888888888888776544 67888
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhch
Q 003150 519 WNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANL 564 (844)
Q Consensus 519 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 564 (844)
+|.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777777777776654
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.026 Score=48.24 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=66.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHH
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFG 699 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 699 (844)
+..++-..|+.++|+.+|++....|...+. ..+..+.+++...|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876653 3666777789999999999999998877532211 2222333455778
Q ss_pred hcCCHHHHHHHHHh
Q 003150 700 RAGRLNKALETINS 713 (844)
Q Consensus 700 ~~g~~~~A~~~~~~ 713 (844)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998877654
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.83 E-value=0.005 Score=50.38 Aligned_cols=79 Identities=13% Similarity=-0.018 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHhccCC--------chHHHHHHHHHHHhCCCCCcchHH
Q 003150 116 NRMIRVFAKMGLFRFALLFYFKMLSCGI-RPDNHTFPSVMKACSALGN--------LRFGKLVHDMIWLMGCEIDVFVGS 186 (844)
Q Consensus 116 ~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 186 (844)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.+|.+.+++.- +-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677777999999999999999999 9999999999999987632 344667888888888999999999
Q ss_pred HHHHHhhc
Q 003150 187 SLVKLYTE 194 (844)
Q Consensus 187 ~li~~y~~ 194 (844)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.0037 Score=48.55 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=53.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 695 VDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
-.+|.+.+++++|.+.++.+ ...|+ +..|......+...|+++.|...++++++..|+++......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35678888999999888888 55555 577777888888999999999999999999998877665543
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.076 Score=52.44 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=100.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh-HH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQR--KQE-AA---WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACG 663 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~ 663 (844)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...+++.++ ..|+. .-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34445567888888888877764 222 11 23345667777888888888888777 34444 33333343332
Q ss_pred h--hC---------------C---HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 003150 664 H--AG---------------Q---VEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVW 723 (844)
Q Consensus 664 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 723 (844)
+ .+ + ..+|.+.|+.+.+ -|-.+.-..+|...+..+...--.. -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-E 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-H
Confidence 1 10 1 1223333333333 3333333444444333331000000 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCC---CchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQN---SGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
-....-|.+.|++..|..-++.+++.-|+. +.+...+...|...|..++|..+.+.+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 123344778899999999999999988876 45677888999999999999998886643
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.73 E-value=0.033 Score=58.86 Aligned_cols=120 Identities=10% Similarity=0.062 Sum_probs=76.8
Q ss_pred CCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHH
Q 003150 546 GVKHDCMSLSAALSACANLHALHYGKEIHSLMIKD--SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR----KQEAA 619 (844)
Q Consensus 546 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 619 (844)
+.+.+.+.+..++..+....+++.+..++-..... ....-..+..+++..|.+.|..+++.++++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666666777777777777776666665543 2222233334677777777777777777665433 67777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhh
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHA 665 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 665 (844)
+|.|+..+.+.|++..|.++..+|..++...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666555555554
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.72 E-value=0.016 Score=47.52 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHhhccC--------CchHHHHHHHHHHHhcCCCChhhh
Q 003150 216 WNVMLNGYVTCGESDNATRAFKEMRISET-KPNSVTFACILSVCAVEA--------MTDFGTQVHGVVVSVGLEFDPQVA 286 (844)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 286 (844)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 999999999999887543 233566788888888899999999
Q ss_pred hHHHHHHhc
Q 003150 287 NSLLSMYSK 295 (844)
Q Consensus 287 ~~li~~~~~ 295 (844)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.027 Score=56.00 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=39.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcC
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKPDH----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAG 702 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 702 (844)
.+.|++++|+..|+.+++ ..|+. ..+..+..++...|++++|...|+.+.+.+.-.| .++.+.-++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 344555555555555554 23333 2334444445555555555555555544332222 2333333444454555
Q ss_pred CHHHHHHHHHhC
Q 003150 703 RLNKALETINSM 714 (844)
Q Consensus 703 ~~~~A~~~~~~~ 714 (844)
+.++|.+.+++.
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.57 E-value=0.0075 Score=62.88 Aligned_cols=63 Identities=17% Similarity=0.011 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 720 AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY---YVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 720 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
...|..+..++...|++++|+..++++++++|++..+ |..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677777777777777777877777777777777754 77777777777877777776665554
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.56 E-value=1.1 Score=46.01 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=82.7
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 487 VGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
+.+.-+.-+...|+...|.++-.+..-|+..-|-..+.+|+..+++++-.++... +-.++.|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444456667788999999999988889999999999999999999877665332 2345788888999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 003150 567 LHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVF 609 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 609 (844)
..+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88888777652 1245778899999998887653
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.29 Score=46.76 Aligned_cols=139 Identities=16% Similarity=0.084 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCc-----hhHHHHH
Q 003150 518 CWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSD-----NIAESVL 592 (844)
Q Consensus 518 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l 592 (844)
.-+.++..+.-.|.+.-.+..+++.++...+-+..-...+.+.-.+.|+.+.+..+++...+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667777888888888888876566677777788888888999999999987776533333 3333334
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003150 593 IDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAI 658 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 658 (844)
...|.-..++.+|...|+++.. .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 4456667788888888887775 3555666655566667888999999999888 56666544433
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.44 E-value=0.33 Score=52.25 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC
Q 003150 490 AITDMYAKCGRLDLAYKIFKRMSE 513 (844)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~m~~ 513 (844)
+++++....+++++|..+-++.++
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc
Confidence 455667777778888777777765
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.36 E-value=0.036 Score=51.69 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=68.8
Q ss_pred HHHHhc--CCCChHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---------------
Q 003150 607 TVFDMM--QRKQEAAWNSMIAAYGC-----HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH--------------- 664 (844)
Q Consensus 607 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--------------- 664 (844)
..|+.. ..++-.+|..++..|.+ +|..+=....+..|.+-|+.-|..+|+.||+.+=+
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666666666654 35666666777788888888888888888776543
Q ss_pred -hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 003150 665 -AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGR 703 (844)
Q Consensus 665 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 703 (844)
-.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 1245678889999987 6999999999999999887775
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.35 E-value=0.04 Score=51.33 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=75.7
Q ss_pred HHHHHhc--CCCChHhHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhch-------------
Q 003150 505 YKIFKRM--SEKDVVCWNSMITRYSQN-----GKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANL------------- 564 (844)
Q Consensus 505 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 564 (844)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 456788888888888754 56666777888899999999999999999887652
Q ss_pred ---hchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003150 565 ---HALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGN 601 (844)
Q Consensus 565 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 601 (844)
.+-+-|.++++.|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788888999999999999998888888876654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.33 Score=46.37 Aligned_cols=169 Identities=10% Similarity=-0.000 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CC--------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQR--KQ--------EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAI 658 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 658 (844)
+++|...|.-..-+++-...|+.-.. .. ...-++++..+.-+|.+.-.+.++++.++..-+-+..-...|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 34555555544444444444443322 12 234567778888888999999999999996545566677788
Q ss_pred HHHHhhhCCHHHHHHHHHHhHhhcC----CCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 003150 659 ISACGHAGQVEAGIHYFHCMTEEYG----IPARMEHYACMVDLFGRAGRLNKALETINSMPF-AP-DAGVWGTLLGACRV 732 (844)
Q Consensus 659 l~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~ 732 (844)
.+.-.+.|+++.|..+|+...+..+ +.-.......+...|.-++++.+|...+.+.+. .| ++...++-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888999999999999998766422 222233333445566667788888888887743 22 23333433333344
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 733 HGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 733 ~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.|+...|.+..+.+.+..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 6789999999999999998754443
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.85 Score=46.78 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=97.7
Q ss_pred CChHHHHHHHHH-HhchhchHHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHHhcCCCChH-------
Q 003150 549 HDCMSLSAALSA-CANLHALHYGKEIHSLMIKDSCRSDNIAESVLID--LYAKCGNLDFARTVFDMMQRKQEA------- 618 (844)
Q Consensus 549 p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~~~~~~~~------- 618 (844)
|...++..+-.- +...|+.++|.++-..+.+..-. ..+..+++ ++--.++.+.|...|++..+-|+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 444555544443 35667778877776666654311 11112222 223457788888888877653221
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCC
Q 003150 619 --------AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIP 685 (844)
Q Consensus 619 --------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 685 (844)
.|..-.+-..+.|++.+|.+.|.+.+. +.|+. ..|.....+..+.|+.++|+.--+...+ +.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD 317 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---ID 317 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cC
Confidence 233334445688899999999998887 45554 4555556667788999998887776633 44
Q ss_pred CC-chHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 686 AR-MEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 686 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
|. +..|-.-..++.-.++|++|.+-+++.
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 334444455666677889998888876
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=96.13 E-value=0.18 Score=52.98 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhh---------hCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHH
Q 003150 632 HLKDSLALFHEMLN-NKIKPDHV-TFLAIISACGH---------AGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFG 699 (844)
Q Consensus 632 ~~~~A~~l~~~m~~-~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 699 (844)
..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.++-+...+ +.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 35678888988882 22677765 33333222111 2344566666666544 555 6777888888888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHH--HHHhcCCcchHHH
Q 003150 700 RAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSN--IHADAGQWGNVNK 775 (844)
Q Consensus 700 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~y~~~g~~~~a~~ 775 (844)
-.|+++.|..+|++. .+.|| +.+|......+.-.|+.+.|...++++++++|....+-+.--+ .|+..+ .++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 899999999999998 67787 4778877778888999999999999999999987666554333 466544 666666
Q ss_pred HHH
Q 003150 776 IRR 778 (844)
Q Consensus 776 ~~~ 778 (844)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 654
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.13 E-value=1.5 Score=42.90 Aligned_cols=193 Identities=19% Similarity=0.167 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQ-----RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS 660 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 660 (844)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445556666666677766666665543 23344555566666666777777777777766332221 11222222
Q ss_pred -HHhhhCCHHHHHHHHHHhHhhcCCCC----CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003150 661 -ACGHAGQVEAGIHYFHCMTEEYGIPA----RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD--AGVWGTLLGACRV 732 (844)
Q Consensus 661 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 732 (844)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677777777777777633 222 2333333444455667777777777666 33333 4666666667777
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 733 HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 733 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.++.+.|...+..++...|+....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777555666666666666667777766655443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.11 E-value=0.075 Score=48.02 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=72.1
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 739 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 739 (844)
....|+.+.+...++.+..-+.-++ +... ........+.+++.- ..+...++..+...|+.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 4556778888888877766543332 1111 122223333333321 23566677778899999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 740 EVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 740 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
...+++++..+|-+...|..|..+|...|+..+|.++++.++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888774
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.09 E-value=0.4 Score=46.09 Aligned_cols=163 Identities=11% Similarity=0.109 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhh
Q 003150 593 IDLYAKCGNLDFARTVFDMMQR--KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGH 664 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 664 (844)
...+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...++++++ .-|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHH
Confidence 3344556777777777776653 21 23444556666677777777777777666 24443 222323333222
Q ss_pred hCCH-------------HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003150 665 AGQV-------------EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACR 731 (844)
Q Consensus 665 ~g~~-------------~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 731 (844)
-... .+|... +..++.-|-.+....+|...+..+...- ..---.+..-+.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1111 122222 2333333333334444444333330000 000112344577
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHhcCCcchHH
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSG---YYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~ 774 (844)
+.|++..|..-++.+++.-|+.+. +...+...|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 889999999999999999998744 4667888899999888443
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=2.6 Score=46.87 Aligned_cols=335 Identities=13% Similarity=0.029 Sum_probs=162.9
Q ss_pred CCCCCChhhHH-----HHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCC---ChhHHHHHhccCCC--
Q 003150 242 SETKPNSVTFA-----CILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSG---RLYDALKLFELMPQ-- 311 (844)
Q Consensus 242 ~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-- 311 (844)
-|+..+..-|. .+|.-+...+.+..|.++-..+.-.-..- ..++.....-+.+.. +-+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 45555444443 34555556666666666666554222222 455666666666552 23334444444444
Q ss_pred CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCC----CCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHH
Q 003150 312 INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGV----KPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLK 387 (844)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 387 (844)
...++|..+.+-....|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+.+.-. ..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s-- 579 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RS-- 579 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HH--
Confidence 4556787777777788888888877653211110 01112233344445555666655555544443210 00
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHHHHHH--HH----HHcCCCCChhhHHHHHHHH
Q 003150 388 SALIDIYFKCRDVKMACKVFKENTA-ADVVMFTAMISGYVLNGISHEALEKFR--WL----IQEKIIPNTVTLSSILPAC 460 (844)
Q Consensus 388 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m----~~~g~~p~~~t~~~ll~a~ 460 (844)
+......+...|..+|..... .|..+ +..+.+.++-.+++..|. .. ...|..|+. ...-.+|
T Consensus 580 ----~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~ 648 (829)
T KOG2280|consen 580 ----SLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAF 648 (829)
T ss_pred ----HHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHH
Confidence 001111222333333333111 11111 111122222222222221 10 011222322 2233344
Q ss_pred hcccchHHHHH----------HHHHHH-HhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHc
Q 003150 461 ADLAALKLGKE----------LHCYIL-KNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQN 529 (844)
Q Consensus 461 ~~~~~~~~a~~----------~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 529 (844)
++........+ +...+. +.|..-.-.+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 44333111111 111111 1122222233344445566677888888888877777777777777888888
Q ss_pred CCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003150 530 GKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTV 608 (844)
Q Consensus 530 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 608 (844)
+++++-.++-+.+. .+.-|.....+|.+.|+.++|..++..... +.-.+.+|.++|++.+|.++
T Consensus 729 ~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 88777666544442 145566677777777777777776654311 11466777777777777554
No 218
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.98 E-value=1.4 Score=43.54 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=13.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIE 545 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~ 545 (844)
...+.+.|++++|++.|+++...
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~ 61 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR 61 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445566666666666666553
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.97 E-value=2.5 Score=44.10 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=56.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 708 LETINSMPFAP----DAGVWGTLLGA--CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 708 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
..++++.++.| +..+-+.|..| +..+|++.++.-...-+.+..| .+.+|.++|-+.....+++||..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555555554 34566667766 5678999999988888889999 7889999999999999999999988743
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.83 E-value=2.9 Score=43.69 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=109.7
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHH-------HHHHHHh-chhchHHH---HHHHHHHHHhCCC
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLS-------AALSACA-NLHALHYG---KEIHSLMIKDSCR 583 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~-~~~~~~~a---~~~~~~~~~~g~~ 583 (844)
=+.++..++....+.++..+|-+.+.-+... .|+...-. .+-+..+ .-..+..- ..++.......+.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 4567888888889999999998888777553 34332111 1111111 11111122 2233333322222
Q ss_pred Cch--hHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChHHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCC
Q 003150 584 SDN--IAESVLIDLYAKCGN-LDFARTVFDMMQR---KQEAAWNSMI----AAYGC---HGHLKDSLALFHEMLNNKIKP 650 (844)
Q Consensus 584 ~~~--~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p 650 (844)
.-. ...---..-|-+.|. -+.|.++++.+.+ -|...-|... .+|.+ ...+.+-+.+=+-..+.|+.|
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 110 111112223334444 6777777776654 3444433322 12221 123344444444555677766
Q ss_pred CHH----HHHHHHHH--HhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 003150 651 DHV----TFLAIISA--CGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWG 724 (844)
Q Consensus 651 d~~----t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 724 (844)
-.+ .-+.|..| +...|++.++.-+-..+. .+.|++.+|.-++-.+....+++||.+++.+.| |+..+|+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 443 33444443 456788888776555443 378888888888888888888888888888874 5655555
Q ss_pred H
Q 003150 725 T 725 (844)
Q Consensus 725 ~ 725 (844)
+
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 4
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.082 Score=44.45 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----chHHHHHHHHHhcCCc
Q 003150 697 LFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS----GYYVLLSNIHADAGQW 770 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~~ 770 (844)
++...|+++.|++.|.+. .+.| .++.|+.-..+++.+|+.+.|..-+++++++.-+.. ..|+.-+.+|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455667777777777665 3333 356777777777777777777777777777643322 2466777777777777
Q ss_pred chHHHHHHHHHHcC
Q 003150 771 GNVNKIRRLMKERG 784 (844)
Q Consensus 771 ~~a~~~~~~m~~~~ 784 (844)
++|..-|...-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777776665554
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.61 E-value=0.58 Score=39.74 Aligned_cols=140 Identities=12% Similarity=0.197 Sum_probs=80.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHH
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 707 (844)
.-.|..++..++..+.... .+..-++.++---...-+-+-..+.++++-+-+.+.|-. ....++..|.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH-
Confidence 3457777777777777652 222333333322222233344455555554433333311 12334555555554333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCc
Q 003150 708 LETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQ 786 (844)
Q Consensus 708 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 786 (844)
.....+.....+|+.+.-..++..+.+.+..+|++.+-++++|.+.|+..++.+++++.=++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445667778899999999999998877778999999999999999999999999999888875
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.59 E-value=0.014 Score=45.88 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLF 747 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 747 (844)
++..+...+...|+.+.|+..+++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 224
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.58 E-value=4.9 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=13.4
Q ss_pred hHHHHHHHHhcC--CHHHHHHHHHhcC
Q 003150 488 GSAITDMYAKCG--RLDLAYKIFKRMS 512 (844)
Q Consensus 488 ~~~li~~~~~~g--~~~~A~~~~~~m~ 512 (844)
.-.+|..|.+.+ .++.|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345566666665 4555555544443
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.48 E-value=0.12 Score=44.66 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHh--------------HhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 003150 652 HVTFLAIISACGHAGQVEAGIHYFHCM--------------TEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--- 714 (844)
Q Consensus 652 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 714 (844)
..++..++.++++.|+++....+.+.. .....+.|+.....+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445556666666666666655555443 111233445555555666666666666665555444
Q ss_pred -CCCCCHHHHHHHHHHHHh
Q 003150 715 -PFAPDAGVWGTLLGACRV 732 (844)
Q Consensus 715 -~~~p~~~~~~~ll~~~~~ 732 (844)
+++-+..+|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 433345556665554443
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.41 E-value=0.65 Score=47.39 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=34.7
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCC---CChhhHHHHHHHHhcccchHHHHHHHHH
Q 003150 424 GYVLNGISHEALEKFRWLIQEKII---PNTVTLSSILPACADLAALKLGKELHCY 475 (844)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 475 (844)
-+|+.|+......+|+..++.|-. .=+..|..+-+++.-.+++++|.++|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 367777777778888777776532 2233455566667777788888877654
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.40 E-value=0.35 Score=46.49 Aligned_cols=140 Identities=12% Similarity=0.108 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCc-hHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARM-EHYACM 694 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 694 (844)
+-.....+...|++.+|.+.|+++... -|+. .....+..++...|++++|...++...+.+.-.|.. ..+-.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 334445566677777777777777763 2222 244455666777777777777777776654444431 111111
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch-----------------H
Q 003150 695 VDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY-----------------Y 757 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~ 757 (844)
+..+... ..... ...+..+....|...++.+++..|+++-. -
T Consensus 86 g~~~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 86 GLSYYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 00000 00112233455666666666666665433 2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 758 VLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
..++..|.+.|.|..|..-++.+.+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467789999999999998887764
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=95.34 E-value=0.2 Score=52.66 Aligned_cols=113 Identities=11% Similarity=0.110 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003150 667 QVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGR---------AGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHG 734 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 734 (844)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. .+.| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788889988754467775 5566666554432 22355666776666 4555 4677777777777788
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 003150 735 NVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 735 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
+++.|...++++..++|+.+..+...+.+..-.|+.++|.+..++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998776
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.33 E-value=0.44 Score=41.68 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 003150 736 VELAEVASSHLFDLDPQN 753 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~ 753 (844)
...|...+++++...|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 345555555555555554
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.30 E-value=0.24 Score=43.32 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHh
Q 003150 695 VDLFGRAGRLNKALETINSM----PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY---YVLLSNIHAD 766 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~ 766 (844)
.....+.|++++|.+.++.+ |..|= ...--.|+.++...|+++.|...+++.++++|+++.+ +...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 33445677777777777776 33332 2455567788888899999999999999988887553 3444444444
Q ss_pred cC
Q 003150 767 AG 768 (844)
Q Consensus 767 ~g 768 (844)
..
T Consensus 97 ~~ 98 (142)
T PF13512_consen 97 QD 98 (142)
T ss_pred Hh
Confidence 43
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.56 Score=46.36 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCH-HHHH
Q 003150 651 DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAG---RLNKALETINSM-PFAPDA-GVWG 724 (844)
Q Consensus 651 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~-~~~~ 724 (844)
|...|..|...|...|+.+.|...|....+ +.| +++.+..+..++.... ...+|.++++++ ..+|+. ....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 445788888888888888888888887755 333 5677777777665443 356777888887 556654 5555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 725 TLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 725 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
-|.-.+...|++++|...++.+++..|.+..--
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 566668888999999999999988877765443
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.15 E-value=3.4 Score=40.10 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 726 LLGACRVHGNVELAEVASSHLFDLDPQNSG---YYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...-|.+.|....|..-++.+++.-|+.+. .+..|.++|...|..++|.+..+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 344577889999999999999988777654 4556778899999999999999888754
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.2 Score=51.29 Aligned_cols=104 Identities=9% Similarity=-0.043 Sum_probs=52.2
Q ss_pred HHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003150 659 ISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 659 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 738 (844)
.+.+.+.|++..|..-|+.+..-....-. -+.++..... ..-...+..|.-.+.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~--------------~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRS--------------FDEEEQKKAE-----ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhcccc--------------CCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhHHH
Confidence 45677888888888887776553221110 0001100000 0011233344444445555555
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 739 AEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
|+....++++++|+|.-+.+.-+.+|...|.++.|...++++.
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555544
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.24 Score=50.73 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=99.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 003150 624 IAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGR 703 (844)
Q Consensus 624 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 703 (844)
.+.|.+.|++..|..-|++.+.. -+ +...-+.++.... ... -...+..+.-++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~-~~~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKA-EAL--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHH-HHH--------HHHHhhHHHHHHHhhhh
Confidence 46789999999999999987661 11 1111122332221 111 12356778888999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchH-HHHHHHH
Q 003150 704 LNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNV-NKIRRLM 780 (844)
Q Consensus 704 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 780 (844)
+.+|++..++. ...| +.....-=..+|...|+++.|+..++++++++|+|-.+..-|+.+-.+....++. .++++.|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 4444 4566666678889999999999999999999999999988888877666666654 6688888
Q ss_pred HH
Q 003150 781 KE 782 (844)
Q Consensus 781 ~~ 782 (844)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.01 E-value=3.8 Score=39.91 Aligned_cols=193 Identities=20% Similarity=0.141 Sum_probs=125.4
Q ss_pred HHHHHHhchhchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHHHHHHHH-HHHhc
Q 003150 556 AALSACANLHALHYGKEIHSLMIKD-SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQ-EAAWNSMIA-AYGCH 630 (844)
Q Consensus 556 ~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~ 630 (844)
.........+.+..+...+...... ........+..+...+...++...+.+.+..... ++ ......... .+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 3333334444444444443333321 2233444455555666666667777777776554 22 122333333 68888
Q ss_pred CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHH
Q 003150 631 GHLKDSLALFHEMLNNKIKP----DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLN 705 (844)
Q Consensus 631 g~~~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 705 (844)
|+++.|...+.+... ..| ....+......+...++.+++...+...... .+. ....+..+...+...|+++
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHH
Confidence 999999999998865 444 2234444444567788999999999888662 333 3677888888999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 706 KALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 706 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
+|...+... ...|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999888887 44554 455666666666667899999999999999987
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.95 E-value=0.029 Score=44.15 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC----CCC---CCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDL----DPQ---NSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
.+++.+...+...|++++|+..+++++++ .|+ -...+..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677777777888888888888877754 222 24568899999999999999999887653
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.21 Score=48.58 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=36.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 003150 629 CHGHLKDSLALFHEMLNNKIKPDH----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGR 703 (844)
Q Consensus 629 ~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 703 (844)
+.|++.+|..-|...++. -|+. ..+..|..++...|++++|..+|..+.+.+.-.|. ++.+--|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555555542 1222 12333444455555555555555555444333332 3344444444444444
Q ss_pred HHHHHHHHHh
Q 003150 704 LNKALETINS 713 (844)
Q Consensus 704 ~~~A~~~~~~ 713 (844)
.++|...+++
T Consensus 231 ~d~A~atl~q 240 (262)
T COG1729 231 TDEACATLQQ 240 (262)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.88 E-value=0.089 Score=45.51 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG 666 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 666 (844)
.++..++-++++.|+++....+++..-.-| +.+-...+. --......|+..+..+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 445556666666666666666665443211 111011111 0122346788888899999999899
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 003150 667 QVEAGIHYFHCMTEEYGIPARMEHYACMVDLF 698 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 698 (844)
++..|.++.+...+.|+++-+...|..|..-.
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999888888777777787776543
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.82 E-value=0.14 Score=53.75 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAPDA----GVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
+..+..+..+|.+.|++++|+..+++. .+.|+. ..|..+..++...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555666666666666666666554 445553 23666666666666666666666666665
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.79 E-value=0.059 Score=34.03 Aligned_cols=33 Identities=33% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888899999999999999988875
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.75 E-value=1.3 Score=39.49 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRA-GRLNKALETINSMPFAPDAGVWGTLLGACR 731 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 731 (844)
...++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+. .++..|..++..|.
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 33455556666666666665555422 22233333333 5566666666552 24455655555443
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.61 E-value=0.051 Score=34.40 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
.+|..+...+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888889999999999999999999874
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.58 E-value=6.9 Score=40.88 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 003150 616 QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACM 694 (844)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 694 (844)
=..+|...++.-.+..-.+.|..+|-+..+.| +.|+...+++.+.-++ .|+..-|.++|+.-...+ +.++..-.-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence 34567777777777777778888888888877 5566677777776554 467777888887665532 2222222344
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 695 VDLFGRAGRLNKALETINSM--PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
.+.+.+-|+-+.|..+|++. .+..+ ..+|..++.--..-|++..+..+-++..++-|.....-+.++
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 56667788888888888765 22223 367888888778888888888888888888887655544444
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.55 E-value=0.31 Score=43.98 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHh----hcCCCCCchH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTE----EYGIPARMEH 690 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 690 (844)
....++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+.+ +.|++|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345566677778888888888888887 444 445788888888888888888888777643 4677777654
No 245
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.39 E-value=14 Score=43.73 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=99.5
Q ss_pred cCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHH
Q 003150 498 CGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLM 577 (844)
Q Consensus 498 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 577 (844)
.+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+.. +
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L 949 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------L 949 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------H
Confidence 456777777777665 334555556667788899998774 57777776666555431 1
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HH
Q 003150 578 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV--TF 655 (844)
Q Consensus 578 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~ 655 (844)
.+. ..++--.-+|.++|+.++|.+. |...|++.+|+.+..++.. .-|.. +-
T Consensus 950 ~~~------~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 REE------LMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HHh------ccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 111 1122334578888888888664 4556788888888777643 12222 22
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 656 LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 656 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
..|.+-+...++.-+|-++..+... . +.--+..|+++-.|++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 4566677777777777777665433 2 234566777777888887776655
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.37 E-value=1.2 Score=47.19 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP-F-APDA--GVWGTLLGAC 730 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~ 730 (844)
-..+..++.+.|+.+||++.|+++.+++...........|++.|...+.+.++..++.+.. + -|.. ..|++.+-..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3445666778899999999999997753322235566788999999999999999988873 2 2332 5566655444
Q ss_pred HhcCCH---------------HHHHHHHHHhhcCCCCCCch
Q 003150 731 RVHGNV---------------ELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 731 ~~~g~~---------------~~a~~~~~~~~~~~p~~~~~ 756 (844)
+.-+|. ..|.+++.++.+.+|--+.+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 444431 23567788888888876654
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=4 Score=39.00 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003150 517 VCWNSMITRYSQNGKPEEAIDLFRQMA 543 (844)
Q Consensus 517 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 543 (844)
..|.--..+|....++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345555667777777777776665554
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.15 E-value=3.2 Score=36.99 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFG 699 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 699 (844)
...++..+...+.......+++.+...+ ..+...++.++..+++.+ .++..+.++. .++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3456667777788888888888888776 355567777787777653 3444455542 122233445777888
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 700 RAGRLNKALETINSMPFAPDAGVWGTLLGACRVH-GNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
+.|.++++.-++.+++. |...+..+..+ ++.+.|.+.+++ ++++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 88888888888888753 22233333344 789999888876 345667776665554
No 249
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.14 E-value=1.9 Score=40.21 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=104.5
Q ss_pred hcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHH
Q 003150 598 KCGNLDFARTVFDMMQ--RKQ-EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIH 673 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~ 673 (844)
..|-.+-|+--|.+.. .|+ ...||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHH
Confidence 3444555555555433 233 46788888888888999999999998887 45543 233333334556788888887
Q ss_pred HHHHhHhhcCCCCCchHHHHHH-HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 674 YFHCMTEEYGIPARMEHYACMV-DLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 674 ~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
-|...- .-.|+- .|.+|- -+-.+.-+..+|..-+.+--...|..-|+..+-.+.- |+.. -+.+++++.+-..+
T Consensus 155 d~~~fY---Q~D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~ 228 (297)
T COG4785 155 DLLAFY---QDDPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATD 228 (297)
T ss_pred HHHHHH---hcCCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc
Confidence 766653 334431 233332 2222334667776444332224555667666655433 2211 11223333333223
Q ss_pred C-------CchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 753 N-------SGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 753 ~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
+ .++|..|+..|...|..++|..++|......
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3 4578899999999999999999999765543
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=1.6 Score=43.15 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=75.0
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGT---LLGACRVHGNVE 737 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 737 (844)
.....|+..+|...|...... .+-+.+.-..|+++|...|+.++|..++..+|..-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 355677778888877777552 222456666778888888888888888888865444333333 122222222222
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 738 LAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
.. ..++.-+..+|+|...-..|+..|...|+.++|.+.+=.+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 1234455678888888888898998899999888854444
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=14 Score=42.06 Aligned_cols=47 Identities=9% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHH
Q 003150 491 ITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAID 537 (844)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 537 (844)
++..+.+..+.+.+..+.+...+.++..|-.++..+++.+..+.-.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHH
Confidence 44555566666666666666665666667667776666665444433
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.95 E-value=0.65 Score=46.62 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHcCCchHHHHHHHHHHHC--CCCCChHHHHHHHHHHhchhchHHHHH
Q 003150 526 YSQNGKPEEAIDLFRQMAIE--GVKHDCMSLSAALSACANLHALHYGKE 572 (844)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 572 (844)
+.+..+.++|+..+.+-... ...--..++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34566777777777665542 111223455555555566555555443
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.93 E-value=0.43 Score=46.51 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM----PFAPD-AGVWGTLL 727 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 727 (844)
.|+.-+. +...|++.+|...|..-.+.|--.+ .+..+-.|+..+...|++++|...|..+ |-.|- +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4444443 4567889999999999988654333 4667778999999999999999888777 44443 35666666
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 728 GACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 728 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
......|+.+.|...++++++..|+.+.+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 677788999999999999999999887664
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.77 E-value=1 Score=48.72 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 734 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 734 (844)
...++.-+.+.|..+.|+++-+.-.. -.++....|+++.|.++.++. ++...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcC
Confidence 45555666667777777665433222 235556677777777776655 35667777777777777
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 735 NVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 735 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
|++.|+..+++. .-+..|.-+|...|+-+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777777777764 234455556666666655555554444433
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.63 E-value=11 Score=39.57 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=93.7
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEG-VKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLI 593 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 593 (844)
-...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.=.+.- +.+..--+-.+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34567777777777777777777888777777 4566666666665443 456666666666544331 22233334566
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003150 594 DLYAKCGNLDFARTVFDMMQR---KQ--EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISAC 662 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 662 (844)
..+.+.++-+.|..+|+...+ .+ ...|..||.--..-|+...+..+=++|.+ +-|...+.....+-+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 677778888888888875432 22 35677888877788888888888777777 567666555555444
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.62 E-value=2.9 Score=40.50 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 758 VLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...++.|.+.|.|-.|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 45778899999999999988888765
No 257
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=16 Score=41.15 Aligned_cols=74 Identities=5% Similarity=-0.037 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 003150 386 LKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACAD 462 (844)
Q Consensus 386 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 462 (844)
+...+|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++ -......+...|..+|..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 45567777888888888888888888888888888888777777655443322 111112344556666666654
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.29 E-value=15 Score=40.22 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=126.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQ---EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAII 659 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 659 (844)
+....|...++.-.+.|+.+.+.-.|+...-|- ..-|-..+.-....|+.+-|-.++....+-- .|+. .+-..-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHH
Confidence 356677888888889999999999998877542 3456555555556688888888777666542 3333 2222222
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----H-H
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKAL---ETINSM-PFAPDAGVWGTLL----G-A 729 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll----~-~ 729 (844)
.-+...|+.+.|..+++.+.+++ |+ .+.-.--+....|.|..+.+. +++... +.+-+..+..-+. . .
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 23677899999999999998853 64 333344567778899999888 665554 2222322222221 1 1
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
+...++.+.|..++.++.+..|++-..|..+.++....+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3456899999999999999999999999999988777763
No 259
>PRK15331 chaperone protein SicA; Provisional
Probab=93.22 E-value=2.4 Score=38.18 Aligned_cols=87 Identities=8% Similarity=0.005 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC
Q 003150 624 IAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAG 702 (844)
Q Consensus 624 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 702 (844)
.--+-..|++++|..+|.-+.. ..|... -|..|..+|-..+++++|+..|.....- . .-|+..+--+..+|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhC
Confidence 3345567788888888877766 334333 3445555566677888888877766441 1 124444555677777888
Q ss_pred CHHHHHHHHHhC
Q 003150 703 RLNKALETINSM 714 (844)
Q Consensus 703 ~~~~A~~~~~~~ 714 (844)
+.++|+.-|+..
T Consensus 120 ~~~~A~~~f~~a 131 (165)
T PRK15331 120 KAAKARQCFELV 131 (165)
T ss_pred CHHHHHHHHHHH
Confidence 888888777666
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.15 E-value=8.3 Score=40.80 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC--CchH
Q 003150 616 QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP---DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA--RMEH 690 (844)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 690 (844)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++..... .+.. +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45578888888888888888888888887643211 2223333344455667888888887777652 1111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 691 YACMVDLFGRAGRLNKALET-INSMPFAPDAGVWGTLLGACRVH------GNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
...+...+.. ..+..... ........-+.++..+..-+... ++.+.+...++++.++.|+....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000012233333333333 788999999999999999998888888877
Q ss_pred HHh
Q 003150 764 HAD 766 (844)
Q Consensus 764 y~~ 766 (844)
+..
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.93 E-value=1.8 Score=45.83 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=93.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhc--CCCCCchHHHHHHHHHHhcCCHHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEY--GIPARMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 707 (844)
..+.+.-+++-++.++ +.||-.+...++. -..+..+.++.++|++..+.. .+..+. .....|. .
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~--------~~~~~g~---~ 246 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEASLGKSQ--------FLQHHGH---F 246 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHhhchhh--------hhhcccc---h
Confidence 3445555666666666 6777765444442 233445777777777765420 000000 0000111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 708 LETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ--NSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 708 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
.+.+.+-...|-..+-..|...+++.|+.++|++.++++++..|. +-.++..|...+...+++.|+..++.+-.+..+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111122233344455666667777777777777777766654 345666777777777777777777765443323
Q ss_pred ccCCCeeEE----EECCEEEEEEeCC--CCCcChHHH--HHHHHHHHHhcCcccC
Q 003150 786 QKIPGYSWI----ELNNITHLFVAAD--ESHSESAQM--LNILLPELEKEGYIPQ 832 (844)
Q Consensus 786 ~~~~~~s~i----~~~~~~~~f~~~~--~~~~~~~~~--~~~l~~~~~~~g~~~~ 832 (844)
.|....+|- ..+.....|.... +.-....++ ++.+.+.++..-.||+
T Consensus 327 pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 222222211 0111112222211 111112233 7788888887777773
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.66 E-value=13 Score=37.78 Aligned_cols=21 Identities=10% Similarity=-0.292 Sum_probs=14.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhh
Q 003150 727 LGACRVHGNVELAEVASSHLF 747 (844)
Q Consensus 727 l~~~~~~g~~~~a~~~~~~~~ 747 (844)
+..+.+.+|++.|...++-.+
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 344667788888888887544
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.63 E-value=5.6 Score=43.80 Aligned_cols=117 Identities=19% Similarity=0.119 Sum_probs=69.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhhhCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCCHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDHVTFLAIIS-ACGHAGQVEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 706 (844)
....+.|.++++++.+ .-|+...|...-. .+...|++++|++.|+.......--| ....+--+.-.+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3466778888888877 4677766654443 45667888888888886543111111 12234445666777888888
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHH-hcCCH-------HHHHHHHHHhhc
Q 003150 707 ALETINSM--PFAPDAGVWGTLLGACR-VHGNV-------ELAEVASSHLFD 748 (844)
Q Consensus 707 A~~~~~~~--~~~p~~~~~~~ll~~~~-~~g~~-------~~a~~~~~~~~~ 748 (844)
|.+.+..+ ....+..+|.-+..+|. ..|+. ++|...++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888777 22334455555555543 34666 555555555433
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.60 E-value=0.39 Score=43.94 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=55.7
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 697 LFGRAGRLNKALETINSM-PFAPD------AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
-+.+.|++++|..-|... ...|. ...|..-..+..+.+..+.|+....++++++|....+....+.+|....+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 344556666665555444 22222 23344444455566777777777777777777777777777777777777
Q ss_pred cchHHHHHHHHHHcC
Q 003150 770 WGNVNKIRRLMKERG 784 (844)
Q Consensus 770 ~~~a~~~~~~m~~~~ 784 (844)
+++|..-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776543
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.56 E-value=0.87 Score=44.11 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=81.2
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccC----------
Q 003150 200 EARYVFDKMS--QRDCVLWNVMLNGYVTC-----GESDNATRAFKEMRISETKPNSVTFACILSVCAVEA---------- 262 (844)
Q Consensus 200 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 262 (844)
..++.|...+ ++|-.+|-+.+..+... +.++=....++.|.+-|+.-|..+|+.+|..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677766 67888888888887654 556667777888999999999999999997765322
Q ss_pred ------CchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCC-hhHHHHHhccCC
Q 003150 263 ------MTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGR-LYDALKLFELMP 310 (844)
Q Consensus 263 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 310 (844)
.-+-+..++++|...|+.||..+-..|++++.+.+- ..+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 233466788888888888888888888888887764 334445555554
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.43 E-value=0.85 Score=38.63 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=28.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 626 AYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
+.+..|+.+.|++.|.+.+. +.|.. ..|+.-..++.-.|+.++|+.-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555555555555555 33332 3555555555555555555555555544
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.23 E-value=1.2 Score=43.16 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=83.8
Q ss_pred HHHHHHhcC--CCChHhHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchh-----------
Q 003150 504 AYKIFKRMS--EKDVVCWNSMITRYSQN-----GKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLH----------- 565 (844)
Q Consensus 504 A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 565 (844)
.++.|...+ ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 56888888888887654 456667778899999999999999999999876642
Q ss_pred -----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcC
Q 003150 566 -----ALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLD-FARTVFDMMQ 613 (844)
Q Consensus 566 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~ 613 (844)
.-+-+..++++|...|+-||..+-..|++++++.|-.- +..++.--|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 22457889999999999999999999999999887643 3334433343
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.19 E-value=2.7 Score=45.47 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHH--hcC-CCChHhHHHHHHHHHHcCCchHHHHHHH
Q 003150 497 KCGRLDLAYKIFK--RMS-EKDVVCWNSMITRYSQNGKPEEAIDLFR 540 (844)
Q Consensus 497 ~~g~~~~A~~~~~--~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 540 (844)
-.++++++.+..+ ++. .-...-.+.++.-+-+.|.++.|+++.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~ 319 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT 319 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC
Confidence 4566766544443 111 1123346677777778888888877643
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=12 Score=35.77 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.2
Q ss_pred HHhc-CCHHHHHHHHHHhhcCCCCCCch
Q 003150 730 CRVH-GNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 730 ~~~~-g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
|... .|.-.+..++++..+++|.-.+.
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 5444 67777888888888888865443
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.90 E-value=3.8 Score=36.79 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=51.5
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 738 (844)
.-...++.+++..++..+. -+.|. +++-..-+..+.+.|+|.+|..+++++ .-.|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3455667777777777773 35664 444444456667778888888888777 333444555666666665433222
Q ss_pred HHHHHHHhhcCCC
Q 003150 739 AEVASSHLFDLDP 751 (844)
Q Consensus 739 a~~~~~~~~~~~p 751 (844)
=...+.++++..|
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3334445555544
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.87 E-value=5.7 Score=43.74 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----hhCCHHHHHHHHHHhHhhcCCCCCch
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDH-----VTFLAIISACG----HAGQVEAGIHYFHCMTEEYGIPARME 689 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 689 (844)
...+++...-.||-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445556666777777777777665522 11111 12333333322 256788999999999774 45544
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHH-HHH
Q 003150 690 HY-ACMVDLFGRAGRLNKALETINSMP-FAP-----DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYV-LLS 761 (844)
Q Consensus 690 ~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 761 (844)
.| -.-..++...|++++|++.+++.- ... ....+--+...+...+++++|...+.++.+.+.-..+.|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34 344678888999999999999762 111 1234445666677789999999999999997766555554 555
Q ss_pred HHHHhcCCc-------chHHHHHHHHHH
Q 003150 762 NIHADAGQW-------GNVNKIRRLMKE 782 (844)
Q Consensus 762 ~~y~~~g~~-------~~a~~~~~~m~~ 782 (844)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 667788988 778887776644
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.09 E-value=0.32 Score=30.60 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666666777777777777777777777774
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=19 Score=35.90 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=98.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAG 702 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 702 (844)
......|++.+|..+|....+. .|+. ..-..+..++...|++++|..++..+-.+ ...+ ......-++.+.++.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 3456778888888888888773 4444 45556677788888888888888776432 1111 111234466777777
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCchHHHHHHHHHhcCCcch-HHHHHH
Q 003150 703 RLNKALETINSMPFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLD--PQNSGYYVLLSNIHADAGQWGN-VNKIRR 778 (844)
Q Consensus 703 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~-a~~~~~ 778 (844)
...+..++..+..-.| |...-..|...+...|+.+.|...+-.++..+ -+|.+.-..|..++...|.-+. +.+.|+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7666666666665556 45666667777888888888877666665543 4456666677777777775554 444555
Q ss_pred HH
Q 003150 779 LM 780 (844)
Q Consensus 779 ~m 780 (844)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 55
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=36 Score=38.91 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=49.5
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHH
Q 003150 223 YVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDA 302 (844)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 302 (844)
+.+.|++++|...|-+-... +.| ..++.-+........--..++.+.+.|+.....+ ..|+.+|.+.++.+.-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHH
Confidence 44577788777766654321 122 2344444444444555556666677776543333 6788888888888887
Q ss_pred HHHhccCC
Q 003150 303 LKLFELMP 310 (844)
Q Consensus 303 ~~~~~~~~ 310 (844)
.++.+...
T Consensus 451 ~efI~~~~ 458 (933)
T KOG2114|consen 451 TEFISKCD 458 (933)
T ss_pred HHHHhcCC
Confidence 77776665
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.59 E-value=11 Score=38.42 Aligned_cols=219 Identities=12% Similarity=0.126 Sum_probs=132.9
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChHhHHHHHHHHHHcCCchHHHHHHH-HHHHC-CCCCC---hHHHHHHHHHHhch
Q 003150 496 AKCGRLDLAYKIFKRMSEK------DVVCWNSMITRYSQNGKPEEAIDLFR-QMAIE-GVKHD---CMSLSAALSACANL 564 (844)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~-g~~p~---~~t~~~ll~a~~~~ 564 (844)
....+.++|+..+.+..++ ...++..+..+.+..|.+++++..-- .|.-. ...-. ...|..+-.+.-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766655442 24567778888888998888765422 22110 01111 22344444444444
Q ss_pred hchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcC
Q 003150 565 HALHYGKEIHSLMIKD-SCRS---DNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHG 631 (844)
Q Consensus 565 ~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 631 (844)
.++.+++++-..-... |..| .....-.+..+....+.++.+.+.|+...+ .| ...+-.|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555554443322 2222 112333466666777788888888886543 12 347888888999999
Q ss_pred ChHHHHHHHHHHHHC--CCCCC--HHHHHHHH-----HHHhhhCCHHHHHHHHHHhHhh---cCCCC-CchHHHHHHHHH
Q 003150 632 HLKDSLALFHEMLNN--KIKPD--HVTFLAII-----SACGHAGQVEAGIHYFHCMTEE---YGIPA-RMEHYACMVDLF 698 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll-----~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~ 698 (844)
|+++|+-+..+..+. .+..+ ...|..++ -++...|..-.|.++-++..+- .|-.| ......++.|+|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999887776541 12222 23444432 2577788888888888776552 23333 244566889999
Q ss_pred HhcCCHHHHHHHHHhC
Q 003150 699 GRAGRLNKALETINSM 714 (844)
Q Consensus 699 ~~~g~~~~A~~~~~~~ 714 (844)
...|+.|.|+.-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999999998888775
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.54 E-value=8.9 Score=39.08 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhhCC--HHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 003150 634 KDSLALFHEMLNNKIKPDHV--TFLAIISACGHAGQ--VEAGIHYFHCMTEEYGIPARMEHYACMVDLF 698 (844)
Q Consensus 634 ~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 698 (844)
+++..+|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+. ++++...+|..++-+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 55677888888888877653 33444443332222 45778888888884 8999888887665433
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.46 E-value=1.2 Score=39.95 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=36.1
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
...++.+.++.++.-+.-+.|+.++.-..-++++...|+|.+|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345666666666666666777777777777777777777777777766665443
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.37 E-value=0.26 Score=44.22 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=62.8
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHH
Q 003150 254 ILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEA 333 (844)
Q Consensus 254 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 333 (844)
++..+...+........++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556666667777777777776667788889999999999888999998884433 4456778888888888888
Q ss_pred HHHHHHHH
Q 003150 334 LDLFRKMI 341 (844)
Q Consensus 334 ~~~~~~m~ 341 (844)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 88888764
No 279
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.33 E-value=39 Score=38.84 Aligned_cols=125 Identities=9% Similarity=0.096 Sum_probs=72.6
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHH
Q 003150 630 HGHLKDSLALFHEMLNNK-IKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 706 (844)
..+.+.|..++.+..... +.++.. ....+.......+..++|...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 446688888888875432 333332 3333333333333356677776654321 1234444555556668899999
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 707 ALETINSMPFA-PDAGVWGT-LLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 707 A~~~~~~~~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
+...+..|+-. .+..-|.- +..+....|+.+.|...++++.. + .++|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 99999888321 11222333 23444567999999999988743 3 34776665
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.22 E-value=0.058 Score=48.52 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhH
Q 003150 152 SVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDN 231 (844)
Q Consensus 152 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (844)
.++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34555666667777777777777766666778888888888888777777777763322 334556666677777777
Q ss_pred HHHHHHHHH
Q 003150 232 ATRAFKEMR 240 (844)
Q Consensus 232 A~~~~~~m~ 240 (844)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 766666653
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.12 E-value=1.3 Score=38.96 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
..++.+.++.++..+--+.|+.++.-..-++++...|+|+||.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 47888888888888888999999999999999999999999999988887655
No 282
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=11 Score=35.83 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=48.7
Q ss_pred HhhhCCHHHHHHHHHHhHhhc----CCCCCchHHHHHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH--
Q 003150 662 CGHAGQVEAGIHYFHCMTEEY----GIPARMEHYACMVDLFGRA-GRLNKALETINSM-----PFAPDAGVWGTLLGA-- 729 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~-- 729 (844)
|.+.+++++|.+.++..++.+ .+.--..++-.+.+.|... .++++|+..++.. +-..+...-..++..
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 444446555555554443321 1111122333455555544 5666666666665 112223333344433
Q ss_pred -HHhcCCHHHHHHHHHHhhcCCCCCCc
Q 003150 730 -CRVHGNVELAEVASSHLFDLDPQNSG 755 (844)
Q Consensus 730 -~~~~g~~~~a~~~~~~~~~~~p~~~~ 755 (844)
-...+++..|+.+++++....-+|+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 22457888999999998876655543
No 283
>PRK12798 chemotaxis protein; Reviewed
Probab=89.65 E-value=30 Score=36.45 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=110.8
Q ss_pred cCCHHHHHHHHHhcCC----CChHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhhhCCHH
Q 003150 599 CGNLDFARTVFDMMQR----KQEAAWNSMIAAY-GCHGHLKDSLALFHEMLNNKIKPDHV----TFLAIISACGHAGQVE 669 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~ 669 (844)
.|+.++|.+.+..+.. +....+-+|+.+- ....+..+|+++|++..- ..|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5889999999988764 3455677776654 455689999999999876 567554 3333344577889999
Q ss_pred HHHHHHHHhHhhcCCCCCchHHH-HHHHHHHhcC---CHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 003150 670 AGIHYFHCMTEEYGIPARMEHYA-CMVDLFGRAG---RLNKALETINSMPFAPD--AGVWGTLLGACRVHGNVELAEVAS 743 (844)
Q Consensus 670 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 743 (844)
++..+-..-...|...|-...|. -++..+.+.+ ..++-.+++..| .|+ ..+|-.+...-...|+.+.|..+.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~--d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM--DPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc--CchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 98887777766677777543333 2333444433 344444555555 344 478888888888999999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHHh
Q 003150 744 SHLFDLDPQNSGYYVLLSNIHAD 766 (844)
Q Consensus 744 ~~~~~~~p~~~~~~~~l~~~y~~ 766 (844)
++++.+-+. .+.-...+++|..
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~a 302 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRG 302 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHH
Confidence 999988633 3344445555544
No 284
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.60 E-value=1.1 Score=31.73 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 725 TLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 725 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
.+.-++.+.|+++.|....+.+++++|+|..+..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 456678899999999999999999999987665444
No 285
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.60 E-value=7.8 Score=38.88 Aligned_cols=174 Identities=12% Similarity=0.046 Sum_probs=114.3
Q ss_pred HhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhhhCCHH
Q 003150 597 AKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAI----ISACGHAGQVE 669 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l----l~a~~~~g~~~ 669 (844)
--.|+..+|-..++++.+ .|..+|+--=.+|...|+...-...+++.... -.||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345788888878887775 47888888889999999999888888888764 35666444332 22556789999
Q ss_pred HHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 003150 670 AGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSMPFAPD-------AGVWGTLLGACRVHGNVELAEV 741 (844)
Q Consensus 670 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~ 741 (844)
+|.+.-++..+ +.| |.-.-.++...+.-.|+..|+.+++.+-.-..+ ..-|... -.+...+.++.|+.
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHH
Confidence 99998777644 555 455556778888889999999999988732111 1123222 22334578899999
Q ss_pred HHHHhh--cCCCCCCch---HHHHHHHHHhcCCcchHHH
Q 003150 742 ASSHLF--DLDPQNSGY---YVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 742 ~~~~~~--~~~p~~~~~---~~~l~~~y~~~g~~~~a~~ 775 (844)
+|.+-+ +++.+|..+ |.-+-.+-.....|.+-.+
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~ 307 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDK 307 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHh
Confidence 887644 455666533 2223334444444444333
No 286
>PRK09687 putative lyase; Provisional
Probab=89.19 E-value=27 Score=35.37 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCChHhHHHHHHHHHHcCCc----hHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 003150 513 EKDVVCWNSMITRYSQNGKP----EEAIDLFRQMAIEGVKHDCMSLSAALSACAN 563 (844)
Q Consensus 513 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 563 (844)
.+|...-...+.++.+.|+. .++...+..+... .|+...-...+.+...
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGH 117 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhc
Confidence 34444444555556666553 3455555555322 2444444444444433
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.14 E-value=1.2 Score=30.10 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV 653 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 653 (844)
+|..+...|...|++++|.++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455666677777777777777777776 456554
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.80 E-value=0.57 Score=30.06 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 003150 723 WGTLLGACRVHGNVELAEVASSH 745 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~~~~ 745 (844)
|..|...|...|++++|+..+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444455555555555554
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.56 E-value=3.6 Score=41.08 Aligned_cols=161 Identities=11% Similarity=0.017 Sum_probs=114.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHH----HHHHHHHHhcCC
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHY----ACMVDLFGRAGR 703 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~ 703 (844)
-.+|+..+|-..++++++. .+.|...+.-.-.+|...|+.+.-...++++... -.|+...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578999999999999985 6667778888888999999999988888887552 34554333 344566678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC----CCchHHHHHHHHHhcCCcchHHHHH
Q 003150 704 LNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ----NSGYYVLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 704 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~ 777 (844)
+++|++.-++. .+.| |.-.-.++.......|+.+++.+..++--..=.. -.-.|-..+-.|...+.++.|.+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887 4443 3455566677778889999998876654322111 1223445666778889999999998
Q ss_pred HHHHHcCCccCCCe
Q 003150 778 RLMKERGVQKIPGY 791 (844)
Q Consensus 778 ~~m~~~~~~~~~~~ 791 (844)
+.-.-+.+.|..+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 85444445565553
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.55 E-value=19 Score=32.68 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=80.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHH-----HHHHHh
Q 003150 627 YGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACM-----VDLFGR 700 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 700 (844)
+++.|..++|+.-|.++.+.|..--.+ ............|+..+|...|+++-.+ .|.|....-+ .-++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 466778888888888888877543222 2222233467788999999999988664 3333333222 235567
Q ss_pred cCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 701 AGRLNKALETINSMPFAPD---AGVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 701 ~g~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
.|-+++.....+.+....+ ...-.+|.-+-.+.|++..|...++++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888888887732222 35566777778899999999999988766
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.50 E-value=15 Score=34.03 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHH-----HHHHHHHhcCCHHHH
Q 003150 635 DSLALFHEMLNNKIKPDHVTFLAI--ISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA-----CMVDLFGRAGRLNKA 707 (844)
Q Consensus 635 ~A~~l~~~m~~~g~~pd~~t~~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 707 (844)
+.....+++....-.....++..| ...+...|++++|...++.... .|.-+.+. -|.......|..|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455555666653212222233332 3357788899999888887643 22222233 345677788999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 708 LETINSMPFAPDAG--VWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 708 ~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
+..++... .++.. .-..-...+...||.+.|+..|+++++.+++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99988762 23222 22223345778899999999999999887654
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.03 E-value=38 Score=35.59 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=83.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCC--CCC-hHHHHHHHHHHhc---hhchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIEGV--KHD-CMSLSAALSACAN---LHALHYGKEIHSLMIKDSCRSDNIAESVLIDL 595 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~-~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 595 (844)
++-.|....+++..+++++.|..... .++ ...--...-|+.+ .|+.+.|++++..+....-.+++.++..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34456677777777777777765310 011 1111111223333 56666666666664444444555554444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhhhC-CHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV---TFLAIISACGHAG-QVEAG 671 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g-~~~~a 671 (844)
|-. .|.+....|.. ..++|+..|.+--+ +.||.. -+.+|+....+.. .-.+.
T Consensus 227 yKD---------~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el 282 (374)
T PF13281_consen 227 YKD---------LFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEEL 282 (374)
T ss_pred HHH---------HHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHH
Confidence 321 11111111111 25667777776666 456553 3333444333311 11222
Q ss_pred HHHH---HH-hHhhcCCCC--CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 003150 672 IHYF---HC-MTEEYGIPA--RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD 719 (844)
Q Consensus 672 ~~~~---~~-~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 719 (844)
.++- .. ..++....+ +-.-+.++..+..-.|+.++|.+..++| ..+|.
T Consensus 283 ~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 283 RKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3322 11 112212222 3344567788888899999999999888 44443
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.01 E-value=5.8 Score=36.66 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 695 VDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
..++.+.+.++.|++-..+. .+.|.. ....--..+|.+...++.|+.-|+++++.+|..-.+-...+
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 33444455555555444433 233321 11111223455566778888888888888887654443333
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.90 E-value=1.6 Score=43.58 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
...|+.++|..-++.+++++|++.+.-
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 345788888888999999999865443
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.40 E-value=1.3 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEML 644 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~ 644 (844)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666643
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.40 E-value=1.4 Score=27.59 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD 651 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 651 (844)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566777777777777777777777777 5554
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.13 E-value=31 Score=36.44 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----CCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDP----QNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
...+|..++..|+++|+++.|...+.++...++ ..+.....-+.+....|+.++|....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999988653 2466777789999999999999998877765
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.98 E-value=4.6 Score=40.23 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLN-----NKIKPDHVTFLAI 658 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~l 658 (844)
.++..++..+..+|+.+.+.+.+++... -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556678888888888888888887664 3677888888888888888888888887765 5677766665554
Q ss_pred HHH
Q 003150 659 ISA 661 (844)
Q Consensus 659 l~a 661 (844)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=22 Score=34.25 Aligned_cols=47 Identities=6% Similarity=-0.070 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHhhcCCCCC------CchHHHHHHHHHhcCCcchHHHHHH
Q 003150 732 VHGNVELAEVASSHLFDLDPQN------SGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.+-+.+.|+++|++.+++-..+ ...+-..++++....+++||...+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 4456777777777766543222 2334556677777777777766544
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.45 E-value=31 Score=34.25 Aligned_cols=57 Identities=19% Similarity=0.004 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 726 LLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
....|...|++.+|....++++.++|-+.+.+..|.++++..|+--+|.+-+..+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345688899999999999999999999999999999999999998888887776643
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.16 E-value=4.3 Score=38.00 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=58.7
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 738 (844)
|-..|.++-|+.-|.... .+.|+ ++.|+-|+--+..+|+++.|.+.|+.. .+.|.- .+...-.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 444566666666666553 46675 677777777778888888888888877 555543 222222222344578888
Q ss_pred HHHHHHHhhcCCCCCC
Q 003150 739 AEVASSHLFDLDPQNS 754 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~ 754 (844)
|.+-+.+..+-+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 8888877778888776
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.09 E-value=35 Score=33.24 Aligned_cols=238 Identities=17% Similarity=0.222 Sum_probs=142.0
Q ss_pred hcCCHHHHHHHHHhcCC----C---ChHhHHHHHHHHHHcCCchHHHHHHHHHHH---CCC--CCChHHHHHHHHHHhch
Q 003150 497 KCGRLDLAYKIFKRMSE----K---DVVCWNSMITRYSQNGKPEEAIDLFRQMAI---EGV--KHDCMSLSAALSACANL 564 (844)
Q Consensus 497 ~~g~~~~A~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~ 564 (844)
+..++++|..-|++..+ + .-.+.-.+|..+.+.+++++.++.+++|.. ..+ .-+..+.+++++-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34577888888877643 1 234455678888999999999988888853 112 23456777777766666
Q ss_pred hchHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------hHHHHHHH
Q 003150 565 HALHYGKEIHSLMIKD-----SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--------KQ-------EAAWNSMI 624 (844)
Q Consensus 565 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li 624 (844)
.+.+.-.++++.-.+. +-..--.+-.-|...|...|++..-.+++.++.. .| ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655555554433221 1111222334577778888888888888776652 11 24677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----hhhCCHHHHHHHHHHhHhhcCCCCCc-----hHHHH
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISAC-----GHAGQVEAGIHYFHCMTEEYGIPARM-----EHYAC 693 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~ 693 (844)
..|....+-.+-..+|++.+.-. .-|-+ ....+++-| .+.|.+++|..-|-++-+.|.-.-++ --|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 88888888777788888776522 23433 344556655 46788888875444443434322222 23556
Q ss_pred HHHHHHhcCC----HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003150 694 MVDLFGRAGR----LNKALETINSMPF--APDAGVWGTLLGACRVHGNVELAEVA 742 (844)
Q Consensus 694 l~~~~~~~g~----~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 742 (844)
|..++.++|- -.||. |. .|.......|+.+|.. ++..+-+++
T Consensus 278 LANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~I 325 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQN-NDIIEFERI 325 (440)
T ss_pred HHHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 6777777762 11211 43 3455777888888755 344433333
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.01 E-value=9.6 Score=35.46 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
.+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...|++..+..+..++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555666666666666666665544444442 344555555556666666665555543
No 304
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=85.87 E-value=50 Score=34.81 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=55.2
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 003150 388 SALIDIYFKCRDVKMACKVFKENTAA---DVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADL 463 (844)
Q Consensus 388 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 463 (844)
..|+.-|...|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.+++..-..| ..|.+.+-+++.+.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhh
Confidence 35677788899999999999986554 45678899999999998888888888877765 45666666666553
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.83 E-value=18 Score=32.80 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=66.1
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHH-----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhhhCCH
Q 003150 597 AKCGNLDFARTVFDMMQRKQEAAWNSM-----IAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS---ACGHAGQV 668 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~g~~ 668 (844)
+..++.++|..-|..+.+.+--+|..| .....+.|+...|...|++.-...-.|...-=..-+. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445666777777776665544444433 2345667777777777777766444444431111122 24566777
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 669 EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
++...-.+-+..+ +.+-....-.+|.-.-.++|++.+|..+|...
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7666555554331 22222333446666666778888888777766
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.61 E-value=41 Score=38.57 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=15.0
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 003150 698 FGRAGRLNKALETINSMPFAP 718 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~p 718 (844)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457888999999999988777
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.38 E-value=1.3e+02 Score=39.23 Aligned_cols=275 Identities=12% Similarity=0.100 Sum_probs=144.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHh-cCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhchhch
Q 003150 490 AITDMYAKCGRLDLAYKIFKR-MSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACANLHAL 567 (844)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~ 567 (844)
.+...|+.-+++|....+... ...++. ..-|.-....|++..|...|+.+.+.+ |+ ..+++.++......+.+
T Consensus 1425 llq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l 1499 (2382)
T KOG0890|consen 1425 LLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHL 1499 (2382)
T ss_pred HHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccch
Confidence 344466666666666655552 323322 223445566778888888888876654 44 56666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHH-HH-HHHhcC--ChHHHHHHHHH
Q 003150 568 HYGKEIHSLMIKDSCRSDNI-AESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSM-IA-AYGCHG--HLKDSLALFHE 642 (844)
Q Consensus 568 ~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~l~~~ 642 (844)
+...-..+.....- .+... .++.-+.+--+.++++...+... ..+..+|.+. +. ...+.. +.-.-.+..+.
T Consensus 1500 ~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~ 1575 (2382)
T KOG0890|consen 1500 STEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIEN 1575 (2382)
T ss_pred hHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHH
Confidence 65555443333221 22222 22223334456677776666655 4555666655 22 111111 11111123333
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHH----------hHhhcCCCCCchHH---HHHHHHHHhcCCHHHHHH
Q 003150 643 MLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHC----------MTEEYGIPARMEHY---ACMVDLFGRAGRLNKALE 709 (844)
Q Consensus 643 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~----------~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~ 709 (844)
+.+.-+.| +.+|+..|.+-.+.++.-. .....++.|+.... .....-+.+.+....+.+
T Consensus 1576 ~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~e 1647 (2382)
T KOG0890|consen 1576 SRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKE 1647 (2382)
T ss_pred HHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHh
Confidence 33221111 2233333322222222111 11112344421111 111222333333333333
Q ss_pred HHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 003150 710 TINSM-------PFAPD-----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 710 ~~~~~-------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 777 (844)
-+-.+ ...|+ ..+|-.....++..|.++.|..+.-++.+.. -+.++.-.|......|+-..|..+.
T Consensus 1648 pILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~L 1725 (2382)
T KOG0890|consen 1648 PILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVL 1725 (2382)
T ss_pred HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHH
Confidence 32222 11222 4789999999999999999999988887776 4678999999999999999999999
Q ss_pred HHHHHc
Q 003150 778 RLMKER 783 (844)
Q Consensus 778 ~~m~~~ 783 (844)
++..+.
T Consensus 1726 q~~l~~ 1731 (2382)
T KOG0890|consen 1726 QEILSK 1731 (2382)
T ss_pred HHHHHh
Confidence 877654
No 308
>PRK09687 putative lyase; Provisional
Probab=84.80 E-value=48 Score=33.62 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=40.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHH-HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVF-DMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISAC 662 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 662 (844)
++..+-...+.++++.|+.. |...+ +.+..++ ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44555555666666666643 33333 3333333 233556667777774 577777777662 45665555445544
Q ss_pred h
Q 003150 663 G 663 (844)
Q Consensus 663 ~ 663 (844)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 309
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.74 E-value=25 Score=30.33 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
....+.....+|+-+.-.+++.++... -+|++.....+..||.+.|+..++.+++.++-+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344556667777777777777777653 367777777777788888888888887777766
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.60 E-value=8.4 Score=30.98 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 706 KALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 706 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
+++.-+-.+.+.|++.+..+.+.||++-+|+..|.++++-+...-.++...|-.+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 3444444457889999999999999999999999999997764444344444433
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.46 E-value=3.9 Score=40.75 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 723 WGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
+..++..+...|+.+.+...++.+++.+|-+...|..|...|...|+...|.+.++.++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 444455555555566666666666666666666666666666666666666665555543
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.99 E-value=15 Score=32.50 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=27.3
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 665 AGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
.++.+++..+++.|. -+.|+ ++.-..-+-.+.+.|+|++|..++++.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 566666666666663 34553 333333444556666777777776666
No 313
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.82 E-value=17 Score=40.68 Aligned_cols=181 Identities=18% Similarity=0.294 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChH----------HHHHHHHHHhchhchHHHHHHHHHHHHh-C-CCCch
Q 003150 519 WNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCM----------SLSAALSACANLHALHYGKEIHSLMIKD-S-CRSDN 586 (844)
Q Consensus 519 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g-~~~~~ 586 (844)
-..++-.|....+++..+++.+.++.. ||.. .|.-.++---+-|+-+.|....--+.+. | +.||
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD- 279 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD- 279 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc-
Confidence 344555666667777777777776553 3211 2222333333445666666555444433 2 3343
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHh
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV---TFLAIISACG 663 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~ 663 (844)
+||-||++- +.|- +.+.|...+..+.|.++|++..+ +.|... .+..|+.+-.
T Consensus 280 --------m~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 --------MYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred --------eeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 566777642 2221 12345556667788899999888 788774 4555554433
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003150 664 HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVAS 743 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 743 (844)
+. ++...++ +.+ | -.|-.+++|.|.+++-.++++-. +.+++-...+|+..|.+++
T Consensus 335 ~~--Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 EH--FENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hh--ccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 21 1211111 111 1 12445678888888776665432 3455566678999999999
Q ss_pred HHhhcCCCCC
Q 003150 744 SHLFDLDPQN 753 (844)
Q Consensus 744 ~~~~~~~p~~ 753 (844)
+.++++.|..
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 9999998864
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.58 E-value=2.5 Score=26.26 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD 651 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 651 (844)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 455566666777777777777777666 4454
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.28 E-value=7.1 Score=35.68 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhc----CCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEY----GIPAR-MEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGA 729 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 729 (844)
|...|.-+++.....++.++++...+++ .+.|+ ...+.|++.+|...+.+ .||..-
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l------------~~d~~~------- 91 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL------------TPDTAE------- 91 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---------------HHH-------
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh------------cCChHH-------
Confidence 3334444455555566666666655432 34553 34555555555433311 122100
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccC
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKI 788 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~ 788 (844)
....+++|...++++.+.+|+|..+...|--. ++|-++..++..++....
T Consensus 92 --A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 92 --AEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS---
T ss_pred --HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhhhh
Confidence 11235677888888889999987776666432 457778888877765443
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.27 E-value=1.9 Score=43.05 Aligned_cols=45 Identities=9% Similarity=0.007 Sum_probs=20.8
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKAL 708 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 708 (844)
-|.+.|.+++|+.+|..... +.| ++..+..-..+|.+..++..|.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 34455555555555544422 333 4444444444455444444443
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.25 E-value=1.1 Score=28.31 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=13.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKAL 708 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~ 708 (844)
++..|..+..+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666666666666666654
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.16 E-value=8.7 Score=40.39 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=74.5
Q ss_pred cCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHH
Q 003150 630 HGHLKDSL-ALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKAL 708 (844)
Q Consensus 630 ~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 708 (844)
.|+...|- +++.-+....-.|+.+...+.| ..+.|.++.+...+..... -+-....+..|++.-+-+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 44444443 3455555544567666655555 5677888888777766644 23334556677777777888888888
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 709 ETINSM-P-FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 709 ~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
.+-+.| + --.++.+...........|-++++...+++++.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777776 1 12233344444444556677788888888888877643
No 319
>PRK10941 hypothetical protein; Provisional
Probab=82.38 E-value=12 Score=37.47 Aligned_cols=62 Identities=23% Similarity=0.063 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.+-+|++.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45666777889999999999999999999999999999999999999999999977766554
No 320
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.26 E-value=55 Score=33.43 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--hhC----CHHHHHHHHHHhHhhcCCCC
Q 003150 633 LKDSLALFHEMLNNKIKPDHVTFLAIISACG--HAG----QVEAGIHYFHCMTEEYGIPA 686 (844)
Q Consensus 633 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~--~~g----~~~~a~~~~~~~~~~~~~~p 686 (844)
+++.+.+++.|.+.|++-+..+|.+-..... ... ....|..+|+.|++++..--
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 3455678888999998888876665333222 222 34578889999988754433
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.24 E-value=13 Score=40.62 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHH
Q 003150 599 CGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHC 677 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 677 (844)
.|+++.|..++..+++ ..-+.++.-+.+.|-.++|++ +.||.. -|. ...+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFe----lal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALE---------LSTDPDQRFE----LALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhh---------cCCChhhhhh----hhhhcCcHHHHHHHHHh
Confidence 3566666665555542 223344455555565555554 233332 121 12345666666665544
Q ss_pred hHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 678 MTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 678 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.. +..-|..|.++...+|++..|.+-+.+.. -|..|+-.+-..|+.+.-..+....-+....|..+
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF- 728 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF- 728 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH-
Confidence 32 23346677777777777777777666542 24555555555566554444444443333333222
Q ss_pred HHHHHHHHhcCCcchHHHHHH
Q 003150 758 VLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~~ 778 (844)
..|...|+.++..+++-
T Consensus 729 ----~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLI 745 (794)
T ss_pred ----HHHHHcCCHHHHHHHHH
Confidence 24555666666666554
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.22 E-value=1.4 Score=25.78 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=18.1
Q ss_pred chHHHHHHHHHhcCCcchHHHHHH
Q 003150 755 GYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 755 ~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887764
No 323
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.06 E-value=41 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=32.5
Q ss_pred hHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHH
Q 003150 287 NSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMIL 342 (844)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 342 (844)
..+++.+...|++-+|.++.......+...-..++.+..+.++..-=..+|+-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566677777777776665444445555666666666665544444444443
No 324
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.91 E-value=14 Score=29.95 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003150 162 NLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRI 241 (844)
Q Consensus 162 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (844)
..++|..|-+.+...|-. ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346677777776665422 22333333456778999999999999999999999988765 466777777777888877
Q ss_pred CCCCCChhhHH
Q 003150 242 SETKPNSVTFA 252 (844)
Q Consensus 242 ~g~~p~~~t~~ 252 (844)
+| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 76 45555553
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.89 E-value=2.6 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
.|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666667777666666666664
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.24 E-value=17 Score=33.77 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQRKQ------EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV---TFL 656 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~ 656 (844)
...+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......|++..+.....+....--.+... .-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3556789999999999999999999988642 3467778888899999999998888776532222221 111
Q ss_pred HHHH--HHhhhCCHHHHHHHHHHhH
Q 003150 657 AIIS--ACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 657 ~ll~--a~~~~g~~~~a~~~~~~~~ 679 (844)
.+.. ++...|++.+|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 1222 2344567777777665553
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.59 E-value=1.1e+02 Score=34.93 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=59.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCCh
Q 003150 220 LNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRL 299 (844)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 299 (844)
|..+.+.+.+++|++..+.-.. ..|... -..++..+|+.+.-.|++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~--------------------------------i~kv~~~yI~HLl~~~~y 408 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFV--------------------------------IKKVGKTYIDHLLFEGKY 408 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--Cccccc--------------------------------hHHHHHHHHHHHHhcchH
Confidence 5567788888888877665432 222110 122335666777777788
Q ss_pred hHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhc
Q 003150 300 YDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICE 361 (844)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 361 (844)
++|-...-.|...+..-|.--+.-+...++......+ +.....+.+...|..+|..+..
T Consensus 409 ~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 409 DEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 8887777777766767777666666666655443322 1111112334445555555544
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.89 E-value=7.8 Score=36.28 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC----CCchHHHHHHHHHhcCCcchH
Q 003150 705 NKALETINSMPFAP--DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ----NSGYYVLLSNIHADAGQWGNV 773 (844)
Q Consensus 705 ~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a 773 (844)
++|.+.|-.+...| +....-..+..+....|.+.++.++-+++++.+. |+.++..|+.+|...|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56666666663222 2233444455566677888899888888887433 477888888898888888776
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.73 E-value=2.9 Score=25.72 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=11.7
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 729 ACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 729 ~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
++...|+.+.|...++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555554443
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.55 E-value=17 Score=36.30 Aligned_cols=96 Identities=10% Similarity=0.143 Sum_probs=70.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003150 581 SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR-K--------QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD 651 (844)
Q Consensus 581 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 651 (844)
|.+....+...++..-....++++++..+-.... + ...+|-.++.. =++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccc
Confidence 5555555666667666677888888887766653 2 23344443333 367788888888888899999
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 652 HVTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 652 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
..|++.+++.+.+.|++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999988887766654
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.42 E-value=46 Score=31.61 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYACM 694 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 694 (844)
.+..++.+.+.+..++|+...++-++. +|.. .+-..++..++-.|++++|..-++...+ +.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 344566677778888888887776663 4544 4555666778888888888877766533 4443 4445555
Q ss_pred HHHHHhcCCHHHHH-HHHHhCCCCC-----CHHHHHHHHHH---HHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 695 VDLFGRAGRLNKAL-ETINSMPFAP-----DAGVWGTLLGA---CRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 695 ~~~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
|++ +.+. ++|..- ..| ....|-..+.+ |..-|.-+.+....+.+++.-|..+
T Consensus 79 ir~-------ea~R~evfag~-~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRC-------EAARNEVFAGG-AVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHHhccC-CCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 443 2222 233222 122 12445554433 3333455666677777777766543
No 332
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.96 E-value=80 Score=34.25 Aligned_cols=162 Identities=13% Similarity=0.004 Sum_probs=72.4
Q ss_pred HHHHhCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHhhccCChHHHHHHHhcCCCC
Q 003150 136 FKMLSCGIRPDNHT--FPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVF--VGSSLVKLYTENRCIDEARYVFDKMSQR 211 (844)
Q Consensus 136 ~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~ 211 (844)
+.+.+.|..|+... -.+.|..++..|+.+ +.+.+.+.|..|+.. ...+-+...++.|+.+.+..+++.-...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 33444565554422 233444455556654 344455556544432 1223445556677777777777654321
Q ss_pred C----cchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhH--HHHHHHhhccCCchHHHHHHHHHHHhcCCCChh-
Q 003150 212 D----CVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTF--ACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQ- 284 (844)
Q Consensus 212 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 284 (844)
+ ...++ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.++.+ .+.|..++..
T Consensus 95 ~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d 165 (413)
T PHA02875 95 DDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIED 165 (413)
T ss_pred cccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCC
Confidence 1 11122 23333445554 344555556666554321 1233344445554433333 3344332211
Q ss_pred -hhhHHHHHHhcCCChhHHHHHhccCC
Q 003150 285 -VANSLLSMYSKSGRLYDALKLFELMP 310 (844)
Q Consensus 285 -~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (844)
...+-+...+..|+.+-+..+++.-.
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 11223333444555555555554433
No 333
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.88 E-value=52 Score=30.08 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHH
Q 003150 371 IHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVF 407 (844)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 407 (844)
....+.+.+++++..++..+++.+.+.|.+..-..++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344445566666666666666666666555444443
No 334
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.61 E-value=1.1e+02 Score=33.79 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=97.7
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003150 485 CHVGSAITDMYAKCGRLDLAYKIFKRMSEK---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSAC 561 (844)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 561 (844)
..+|+..++.-.+.|+.+.+.-+|++...| -...|--.+.-....|+.+-|..++..-.+--++-...+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345666667777888888888888877654 22344444444444577777766665554433322222222222223
Q ss_pred hchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH---HHHHhcCC--CChHHHHHHHH-----HHHhcC
Q 003150 562 ANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFAR---TVFDMMQR--KQEAAWNSMIA-----AYGCHG 631 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~-----~~~~~g 631 (844)
-..|+...|+.+++.+...- +.-+..-..-+.+..+.|+.+.+. +++..... .+....+.+.. .+.-.+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 45678888888888777653 222233333456666777777776 44433322 12222222221 233456
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhh
Q 003150 632 HLKDSLALFHEMLNNKIKPDHVTFLAIISACGHA 665 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 665 (844)
+.+.|..++.++.+. +.++..-|..++.-+...
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 777777777777773 344445566666544433
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.46 E-value=10 Score=30.84 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 706 KALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 706 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
+++.-+-.+.+.|++.+..+.|.+|++-+|+..|.++++-+-..-.+....|-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 3333444457889999999999999999999999999998876555444455443
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.81 E-value=1.5e+02 Score=34.69 Aligned_cols=183 Identities=15% Similarity=0.140 Sum_probs=86.7
Q ss_pred HhcCCHHHHHHHHHhcC----CCC-------hHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHH
Q 003150 597 AKCGNLDFARTVFDMMQ----RKQ-------EAAWNSMIAA-YGCHGHLKDSLALFHEMLNNKIK-----PDHVTFLAII 659 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~----~~~-------~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~-----pd~~t~~~ll 659 (844)
....++++|..++.+.. .++ ...|+++-.. ....|++++|+++.+..... +. +..+.+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhh
Confidence 34556666666655432 221 1245555332 33456777777777666653 22 2223444455
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHH-----HHHHHhcCCHHHHH--HHHH---hC--CCCCC----HHHH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACM-----VDLFGRAGRLNKAL--ETIN---SM--PFAPD----AGVW 723 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A~--~~~~---~~--~~~p~----~~~~ 723 (844)
.+..-.|++++|..+.....+. .-.-+..++..+ ...+...|+...|. ..++ .- +.+|- ..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 5566667777777766555441 122233333322 22344555322222 1121 11 22222 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcC----CCCCCc---hHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDL----DPQNSG---YYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
..++.++.+ .+.+...+.+.++. .|..-. .+..|+.++...|+.++|.....++....
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 344444333 44444444433332 222211 12367777777788888777777776543
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.50 E-value=1e+02 Score=32.63 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHhhhCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 003150 659 ISACGHAGQVEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFG-RAGRLNKALETINSM 714 (844)
Q Consensus 659 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 714 (844)
+..+.+.|-+..|.++.+-+. .+.| |+.....+||.|+ ++++++--+++++..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 446677788888888777763 3555 4555555666664 666776666666654
No 338
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.33 E-value=17 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.287 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 003150 632 HLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMV 695 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 695 (844)
+.-++.+-++.+....+.|+.....+-+.||.+.+++.-|.++|+.++.+-+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445566666777777899999999999999999999999999998876433 2444565554
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.15 E-value=5.6 Score=26.06 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 645 (844)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666666666666666666543
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.01 E-value=13 Score=30.23 Aligned_cols=60 Identities=12% Similarity=0.322 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 635 DSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 635 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
+..+-++.+....+.|+.....+.|.||.+.+++.-|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666777899999999999999999999999999999987533 33336766654
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.88 E-value=3.9 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 645 (844)
+|..+...|.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.82 E-value=1.5e+02 Score=34.20 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHhCCC-------CChhhHHHHHHHH--HhcCCchHHHHHHHHHHHcCC---------CCChhhHHHHHH
Q 003150 397 CRDVKMACKVFKENTA-------ADVVMFTAMISGY--VLNGISHEALEKFRWLIQEKI---------IPNTVTLSSILP 458 (844)
Q Consensus 397 ~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~ 458 (844)
.++...|.+.++.+.. +-+...-.++.+. .+.+..+++++..+++..... .|-..+|..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 3677777776665321 2223333344333 345556777777776643221 234455666666
Q ss_pred HHhc--ccchHHHHHHHHHH
Q 003150 459 ACAD--LAALKLGKELHCYI 476 (844)
Q Consensus 459 a~~~--~~~~~~a~~~~~~~ 476 (844)
.|+. .|+++.+.+....+
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 6544 45555665554444
No 343
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.69 E-value=1.7 Score=43.67 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=30.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 728 GACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 728 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
+++.+.++...|++-+..+++++|+...-|-.-+.+....|+|++|.+.+...-+.+.
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 3344444555555555555555555555555555555555555555555544444433
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.19 E-value=4.9 Score=39.86 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=56.8
Q ss_pred CCCCChhhHhHHHHHHHhcCChhhHhhhccCCCC-C--------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003150 76 GISDNAALGAKILGMYVLCGGFIDAGNMFPRLDL-A--------TSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPD 146 (844)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 146 (844)
|...+..+-..++..-.....++++...+-+++. | +.++| ++.+.+ -++++++.++..=...|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHHc-cChHHHHHHHhCcchhccccc
Confidence 4444444445555555555566666666555432 1 12222 222222 255677777777777777777
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 003150 147 NHTFPSVMKACSALGNLRFGKLVHDMIWLMG 177 (844)
Q Consensus 147 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 177 (844)
.+++..++..+.+.+++..|.++..+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666665543
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.15 E-value=71 Score=36.19 Aligned_cols=82 Identities=18% Similarity=0.054 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc-CCcchHHHHH
Q 003150 703 RLNKALETINSMP--FAPDAGVWGTLLGACR--VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA-GQWGNVNKIR 777 (844)
Q Consensus 703 ~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~ 777 (844)
+...|.+++.... -.+++..+-++...+- ...+.+.|...++++-+.+ ++.+...++..|.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 3456666666652 2223333322222111 2236667777777776666 344444444444333 6777766666
Q ss_pred HHHHHcCCc
Q 003150 778 RLMKERGVQ 786 (844)
Q Consensus 778 ~~m~~~~~~ 786 (844)
..+++.|.+
T Consensus 421 ~~~a~~g~~ 429 (552)
T KOG1550|consen 421 LYLAELGYE 429 (552)
T ss_pred HHHHHhhhh
Confidence 666665543
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.70 E-value=42 Score=27.34 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=26.8
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003150 597 AKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF 655 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 655 (844)
...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.+|...| .|...+|
T Consensus 50 mNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34455555555555555555555544432 23444444444444554443 3433333
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.32 E-value=2.6 Score=25.91 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 756 YYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 756 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
++..++.+|...|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999988654
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.15 E-value=59 Score=30.90 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP----DAGVWGTLL 727 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll 727 (844)
|....++.+.+.+.+.+|+...+.-.+ -+| +...-..++++|+-.|+|++|..-++-. .+.| ....|+.++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 344556778888999999998877655 355 6677778999999999999998766655 3334 457777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhc--CCCCCCc----hH--HHHHHHHHhcCCcch-HHHHHHHHHHcC
Q 003150 728 GACRVHGNVELAEVASSHLFD--LDPQNSG----YY--VLLSNIHADAGQWGN-VNKIRRLMKERG 784 (844)
Q Consensus 728 ~~~~~~g~~~~a~~~~~~~~~--~~p~~~~----~~--~~l~~~y~~~g~~~~-a~~~~~~m~~~~ 784 (844)
.+-.. -...++ ..|.-.+ .+ .+++++-++.+.-.+ +..+++.-.+.+
T Consensus 80 r~ea~----------R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa 135 (273)
T COG4455 80 RCEAA----------RNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAA 135 (273)
T ss_pred HHHHH----------HHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhC
Confidence 64222 222222 3343222 23 345555555554555 445666555544
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.14 E-value=23 Score=37.44 Aligned_cols=140 Identities=8% Similarity=0.056 Sum_probs=99.1
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003150 664 HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEV 741 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 741 (844)
..|++-.|-+-+....+.+.- ++.+.......+...|.++.+.+.+... -+.....+...++......|..+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~--~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ--DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC--CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 356666665444444332333 4445555556778899999999999887 234445778888898889999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCeeEEEECCEEEEEEeCC
Q 003150 742 ASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGYSWIELNNITHLFVAAD 807 (844)
Q Consensus 742 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~ 807 (844)
.++-++..+-++++....-+..--..|-.|++.-.+++.-... +.....|+..-..+.-|-.|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCcc
Confidence 9999999888888777666655566788999999999886543 333445776666666665554
No 350
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.01 E-value=1.6e+02 Score=33.81 Aligned_cols=90 Identities=12% Similarity=0.207 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh--HHHHHHHHHH-HhcCC-----------hHHHHHHHHHHHHCC-----CCCC-H
Q 003150 593 IDLYAKCGNLDFARTVFDMMQRKQE--AAWNSMIAAY-GCHGH-----------LKDSLALFHEMLNNK-----IKPD-H 652 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~-~~~g~-----------~~~A~~l~~~m~~~g-----~~pd-~ 652 (844)
..-+...|++++|..+|+-..+.|. ...|.+++-. ..... ...|..+.+.....+ +.+. .
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 3445567888888888877765432 2344444322 22222 334444444443322 2222 2
Q ss_pred HHHHHHHH-----HHhhhCCHHHHHHHHHHhHhhcCCCC
Q 003150 653 VTFLAIIS-----ACGHAGQVEAGIHYFHCMTEEYGIPA 686 (844)
Q Consensus 653 ~t~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~~~~p 686 (844)
.|+..|+. ...+.|++++|++.++++ ++-|
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L----~liP 535 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKL----DLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT----T-S-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC
Confidence 46666665 357889999999988876 6777
No 351
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=74.05 E-value=1.2e+02 Score=31.73 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=124.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHH--HHHHHHCCCCCCHHHHHHHH
Q 003150 582 CRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLAL--FHEMLNNKIKPDHVTFLAII 659 (844)
Q Consensus 582 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~pd~~t~~~ll 659 (844)
...+..+...+++++...++|+.--+... ....++|+...|+.. .+-|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 34455566667777777777765333221 223466777777652 22233223456777766666
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCC------CH--HHHHHHHHHHH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAP------DA--GVWGTLLGACR 731 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~--~~~~~ll~~~~ 731 (844)
..+.. +-++. +|-+.. ....-..|++.+-..|++++|.+++.+.+.+. .. ...---+..|.
T Consensus 114 ~tLr~---Vtegk-IyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 114 ETLRT---VTEGK-IYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred HHHHH---hhcCc-eEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55432 11111 111111 12233457788899999999999998885421 11 11112245688
Q ss_pred hcCCHHHHHHHHHHhhcCC---CCC----CchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCeeEEEECCEEEEEE
Q 003150 732 VHGNVELAEVASSHLFDLD---PQN----SGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGYSWIELNNITHLFV 804 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~ 804 (844)
..+|+-.|..+.+++.... |+- -.+|.++..++.+.+.+=++-+.++.+-+-|..+...--|+++--.+-.|.
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 8899999998888876532 221 236888888988999999999999999887766554444766655555555
Q ss_pred eCCCCCcChHHH
Q 003150 805 AADESHSESAQM 816 (844)
Q Consensus 805 ~~~~~~~~~~~~ 816 (844)
.-...-+.-.++
T Consensus 263 ~LAp~dneQsdl 274 (439)
T KOG1498|consen 263 VLAPHDNEQSDL 274 (439)
T ss_pred eecCCCcHHHHH
Confidence 544333333333
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.86 E-value=1.4e+02 Score=32.44 Aligned_cols=160 Identities=9% Similarity=0.075 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhh
Q 003150 588 AESVLIDLYAKCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHA 665 (844)
Q Consensus 588 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 665 (844)
..-++++.++..-+..-.+.+..+|.. .+-..|-.++..|..+ ..++-..+|+++.+ ..-|.+.+..-+.-+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHH
Confidence 334455555555555555555555543 3445566666666666 44556666666666 344554444444444444
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC------chHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 003150 666 GQVEAGIHYFHCMTEEYGIPAR------MEHYACMVDLFGRAGRLNKALETINSM----PFAPDAGVWGTLLGACRVHGN 735 (844)
Q Consensus 666 g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~ 735 (844)
++.+.+..+|..+.. .+-|. .+.|.-++... ..+.|.-+.+..+. +..--.+.+.-+-.-|....|
T Consensus 145 ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 666666666666654 23331 22344333322 22344444444443 212222333334344555566
Q ss_pred HHHHHHHHHHhhcCCCCCC
Q 003150 736 VELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~ 754 (844)
+++|+++.+.+++.+..|.
T Consensus 221 ~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 221 WTEAIRILKHILEHDEKDV 239 (711)
T ss_pred HHHHHHHHHHHhhhcchhh
Confidence 6667666666666655543
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.66 E-value=9.4 Score=41.32 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=69.8
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFGRAGRLNKALETINSM-PF-APDAGVWGTLLGACRVHGNVE 737 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~ 737 (844)
+...|+...|...+..+ +...| .......|...+.+.|...+|-.++.+. .+ ...+.+...+.+++....|++
T Consensus 617 wr~~gn~~~a~~cl~~a---~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRA---LNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHH---hccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 44567778887777666 34455 2334556777777888777887777665 22 334566777778888888889
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 738 LAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
.|++.++++++++|+++.....|-.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999888777666544
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.87 E-value=15 Score=33.72 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC----cchHHHHHHHH
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ----WGNVNKIRRLM 780 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m 780 (844)
++.|+.-+++++.++|+...++..|+++|...+. ..+|..++++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888899999999999999999988644 33444555444
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.50 E-value=7.7 Score=22.55 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 003150 692 ACMVDLFGRAGRLNKALETIN 712 (844)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~ 712 (844)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665553
No 356
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.88 E-value=3.5e+02 Score=35.79 Aligned_cols=108 Identities=15% Similarity=0.037 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--------HHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM--PFAPD--------AGV 722 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------~~~ 722 (844)
.+|......+...|.++.|...+-.+.+. + . +..+--.+..+...|+-..|+.++++. ...|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36777777777788888887766555442 2 2 344556677778888888888777664 11121 222
Q ss_pred HHHHHHH--------H-HhcCC--HHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 723 WGTLLGA--------C-RVHGN--VELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 723 ~~~ll~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
-+.++.. + ...|+ .+.-++.|.++.+..|....-|+.|+.-|
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 2222222 1 12344 34556778889999998777777777444
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.89 E-value=35 Score=34.31 Aligned_cols=118 Identities=13% Similarity=0.165 Sum_probs=57.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHH
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNNKIKPDHV---TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLF 698 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 698 (844)
|..+-.+.|+..+|.+.|+.+.+. .|=.. ....|+.+|....-+.+...++-+-.+ ...+.+ ...|++ ++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd-islPkSA~icYTa---AL 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD-ISLPKSAAICYTA---AL 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcchHHHHHHH---HH
Confidence 444555677777777777776653 23111 234456666655555544444433322 112212 122221 11
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 699 GRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
-++..+-++ +.||..+-+.|-.+- ..|.++..++.+.+|.-|.+..-+
T Consensus 355 ------LK~RAVa~k--Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 355 ------LKTRAVSEK--FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred ------HHHHHHHhh--cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHHHHHH
Confidence 122222222 356655444333222 236677888889999877765433
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.91 E-value=1.7e+02 Score=31.52 Aligned_cols=204 Identities=15% Similarity=0.166 Sum_probs=104.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhhhCCHHHHHHHHH---HhHhhcCCCCCchHHHH
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNNKIKPDH------VTFLAIISACGHAGQVEAGIHYFH---CMTEEYGIPARMEHYAC 693 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t~~~ll~a~~~~g~~~~a~~~~~---~~~~~~~~~p~~~~~~~ 693 (844)
-...|..+..+..|+++....... +.|=. +++..+. .+....+.++|+.++. .|.......|...+-
T Consensus 106 ~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~-l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~-- 181 (696)
T KOG2471|consen 106 FAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDL-LAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHI-- 181 (696)
T ss_pred hheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--
Confidence 344556666777777776665543 22221 2222221 2344455666666544 333332333321100
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchH
Q 003150 694 MVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNV 773 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 773 (844)
-.....+.+-...|..-+-.. .|...+..--+.++....++..+.+-.+.+.....+.+.+..+-++.++..|++.+|
T Consensus 182 ~~nn~~kt~s~~aAe~s~~~a--~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 182 PANNLLKTLSPSAAERSFSTA--DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred chhhhcccCCcchhcccchhh--ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 011222333333333322222 111122222344556667888888888888888778888888999999999999999
Q ss_pred HHHHHHHHHcCCccCCC------e-eEEEECCEEEEEEeCCCCCcChHHH--HHHHHHHH--HhcCcccCCCCcc
Q 003150 774 NKIRRLMKERGVQKIPG------Y-SWIELNNITHLFVAADESHSESAQM--LNILLPEL--EKEGYIPQPCLSM 837 (844)
Q Consensus 774 ~~~~~~m~~~~~~~~~~------~-s~i~~~~~~~~f~~~~~~~~~~~~~--~~~l~~~~--~~~g~~~~~~~~~ 837 (844)
.+++-. .++.+.|| + ++|--+|-.--|..- +|.+.... +..|...+ ...|+.|.+-+.+
T Consensus 260 ~KlL~~---sni~~~~g~~~T~q~~~cif~NNlGcIh~~~--~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 260 MKLLLV---SNIHKEAGGTITPQLSSCIFNNNLGCIHYQL--GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHHHh---cccccccCccccchhhhheeecCcceEeeeh--hhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 987653 44555555 3 444433322222211 23333333 44453222 2358888765543
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.54 E-value=34 Score=29.67 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
.-|.-+|.+.++++.+++..+.+++.+|+|..+
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 345567888899999999999999999987544
No 360
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.79 E-value=41 Score=29.20 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhc-CCCCC-CchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCe
Q 003150 717 APDAGVWGTLLGACRVH---GNVELAEVASSHLFD-LDPQN-SGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGY 791 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~ 791 (844)
.++..+--.+..++... .|.++++.+++.+++ -.|+. -.....|+-.+++.|+++.+.++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e------- 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE------- 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC-------
Confidence 34445555666666554 366788899999997 45543 3345567778999999999999998776532
Q ss_pred eEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHhcCcc
Q 003150 792 SWIELNNITHLFVAADESHSESAQMLNILLPELEKEGYI 830 (844)
Q Consensus 792 s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~ 830 (844)
.+.++..+.-+.+..+|.++|+.
T Consensus 102 ----------------~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 102 ----------------PNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ----------------CCcHHHHHHHHHHHHHHhhccee
Confidence 12344444455667788888875
No 361
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.74 E-value=9.3 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHH
Q 003150 757 YVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 757 ~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
+..|+.+|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344555555555555555554444
No 362
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.58 E-value=1.4e+02 Score=32.37 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=65.4
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHhhccCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCChhHHH
Q 003150 158 SALGNLRFGKLVHDMIWLMGCEIDVFV--GSSLVKLYTENRCIDEARYVFDKMSQRDCV--LWNVMLNGYVTCGESDNAT 233 (844)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~ 233 (844)
+..|+.+. .+.+++.|..++... ..+.+...++.|+.+-+.-+++.=..++.. ...+.+...++.|+.+.+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 34456544 444556677665432 344556666778887776666543323221 1123344556677776554
Q ss_pred HHHHHHHhCCCCCChh---hHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChh--hhhHHHHHHhcCCChhHHHHHhcc
Q 003150 234 RAFKEMRISETKPNSV---TFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQ--VANSLLSMYSKSGRLYDALKLFEL 308 (844)
Q Consensus 234 ~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 308 (844)
.+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 86 ~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 86 ELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 4443 23211110 0112233333444443 344444555554322 112334444455665555555544
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.38 E-value=1.6e+02 Score=29.82 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEM 643 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m 643 (844)
|+. ...+.+.+++++|.++|+-.
T Consensus 250 W~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 250 WNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHH-HHHHHhhcCHHHHHHHHHHH
Confidence 444 34456778899999888743
No 364
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.56 E-value=5.3 Score=42.32 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=66.4
Q ss_pred HHHHhhhCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 003150 659 ISACGHAGQVEAGIHYFHCMTEEYGIPARM-EHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVHGN 735 (844)
Q Consensus 659 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~ 735 (844)
+......+.++.|...+.++++ +.|+- ..|..=..++.+.+.+..|+.=..++ ...|.- ..|---..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 3445566788888888888865 67753 33444447777888888887554444 555553 334333456777778
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
+..|...++....+.|+++.+-..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 8888888888888899887655444
No 365
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.46 E-value=98 Score=30.16 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 003150 620 WNSMIAAY--GCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDL 697 (844)
Q Consensus 620 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 697 (844)
|...+.|+ ..++++++|++++..- .+.|+... -++.++...|+.+.|..+++.+.- .-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 33344443 3456666666665221 12233222 255566667777888877766521 11123333333334
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003150 698 FGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 734 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 734 (844)
...|.+.||..+.++.+-.-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 455788888887777643222356777777776544
No 366
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.45 E-value=9.8 Score=30.67 Aligned_cols=62 Identities=23% Similarity=0.088 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHhcCCcc-hHHHHHHHH
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN--SGYYVLLSNIHADAGQWG-NVNKIRRLM 780 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~-~a~~~~~~m 780 (844)
|......+...+...|+++.|...+-.+++.+|+. ...-..|..++...|.-+ -+.+.|++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 34566666667777777777777777777766543 556666666666666644 455555554
No 367
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.32 E-value=11 Score=35.86 Aligned_cols=58 Identities=26% Similarity=0.428 Sum_probs=45.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 697 LFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
+....|+.+.|.+++++. ...|+ ...|--+...-.+.|+++.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445677788888888777 55555 57788887777888999999999999999988763
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.97 E-value=3.5e+02 Score=32.95 Aligned_cols=49 Identities=10% Similarity=-0.103 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003150 686 ARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 734 (844)
Q Consensus 686 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 734 (844)
+++..-...+..+++.|..+.+...+..+-..+|..+-...+.++...+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 3444445555555555544333222222222344444444444444444
No 369
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.97 E-value=50 Score=31.08 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=18.6
Q ss_pred hCCHHHHHHHHHHhHhhcC--CCCCchHHHHHHHHHHhcCCHHHH
Q 003150 665 AGQVEAGIHYFHCMTEEYG--IPARMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 707 (844)
..+.++++.++....+-+. -.++++.+..|+..+.+.|++++|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444433211 123444455555555555554444
No 370
>PF15469 Sec5: Exocyst complex component Sec5
Probab=62.64 E-value=1.3e+02 Score=28.00 Aligned_cols=119 Identities=11% Similarity=0.204 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLF 698 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 698 (844)
+..++..-.+......++.++++..- .+..-.-|.-|...|+++.+...|..+...++-.. ....+.-
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~----- 128 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK----- 128 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH-----
Confidence 33334333444445555555554432 11222445667788888888888887766432221 1111211
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 699 GRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
-+.++..+++... ..+|..|... ....+....+...+++++|++.++|..|
T Consensus 129 ----v~~eve~ii~~~r----~~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 129 ----VWSEVEKIIEEFR----EKLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred ----HHHHHHHHHHHHH----HHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 2334444433331 1233333322 1567778888888889988766666544
No 371
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.20 E-value=27 Score=33.68 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
+...|++-+++..-..++..+|+|..+|..-+.+.+..=+.++|.+-+....
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3456788888888888888888888888888877766655556666555443
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.14 E-value=11 Score=22.79 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 003150 734 GNVELAEVASSHLFDLDPQNSGYYVLLSN 762 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 762 (844)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888999988888888877776654
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.08 E-value=92 Score=30.94 Aligned_cols=88 Identities=13% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh-
Q 003150 624 IAAYGCHGHLKDSLALFHEMLNN--KIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR- 700 (844)
Q Consensus 624 i~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 700 (844)
|.+++..|++.+++...-+--+. .++|...-..++ .|++.|......+.-....+..+.. +..-|..++++|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHHHHH
Confidence 56777778888877765544431 244443333333 4788888888888777776642222 23338877776654
Q ss_pred ----cCCHHHHHHHHHhC
Q 003150 701 ----AGRLNKALETINSM 714 (844)
Q Consensus 701 ----~g~~~~A~~~~~~~ 714 (844)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 68899999888554
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.06 E-value=3.5e+02 Score=32.26 Aligned_cols=127 Identities=12% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhh-
Q 003150 115 WNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYT- 193 (844)
Q Consensus 115 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~- 193 (844)
|..|+-.|...|++++|+++|.+.....-.-|. +.. +.-+.+.+.+.+.|-+ +. .||-.|.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~~~------------~~~e~ii~YL~~l~~~-~~----~Li~~y~~ 568 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDS-FQL------------DGLEKIIEYLKKLGAE-NL----DLILEYAD 568 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccccccc-chh------------hhHHHHHHHHHHhccc-ch----hHHHHHhh
Confidence 889999999999999999999998763210111 111 1111234444444422 11 2222222
Q ss_pred --ccCChHHHHHHHhcCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 003150 194 --ENRCIDEARYVFDKMSQ--RDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAV 260 (844)
Q Consensus 194 --~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 260 (844)
-..+.+.+.++|-.-.. .....-. -+-.|......+-+...++.+....-.++..-.+.++..|+.
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 24556666677765111 1111112 234567778888889999998877666777777777766653
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.74 E-value=68 Score=26.57 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=57.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 003150 161 GNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMR 240 (844)
Q Consensus 161 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (844)
...++|..|.+.+...+- ....+--..+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456778888888887663 333333444556778999999966666677799999977754 57888888888888887
Q ss_pred hCCCCCChhhH
Q 003150 241 ISETKPNSVTF 251 (844)
Q Consensus 241 ~~g~~p~~~t~ 251 (844)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3444444
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.30 E-value=17 Score=28.15 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=7.5
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 003150 691 YACMVDLFGRAGRLNKAL 708 (844)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~ 708 (844)
+.+|+.+|+..|++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.13 E-value=1.9e+02 Score=28.98 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHh----hcCCCCC
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTE----EYGIPAR 687 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~ 687 (844)
++.....|...|.+.+|.++-++.+. +.| +...+..++..+...|+--.+.+.++.+.+ ++|+..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 44455678888888888888888777 344 445666777778888886667666666543 3455554
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.74 E-value=22 Score=34.14 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=72.7
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARM-EHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGAC-RVHGNVE 737 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~ 737 (844)
-|.....++.|+..+.+.+ .+.|+. ..|..=+-.+.+..+++.+.+--.+. .+.|+.+--...++.+ .....++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4777788889998776664 467865 55666777788888888887666555 7788875555555554 4556788
Q ss_pred HHHHHHHHhhcC---CCCCCchHHHHHHHHHhcCCcchHHH
Q 003150 738 LAEVASSHLFDL---DPQNSGYYVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 738 ~a~~~~~~~~~~---~p~~~~~~~~l~~~y~~~g~~~~a~~ 775 (844)
.|+..+.++..+ .|-+++-=+-.+-.-++..+|+....
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~ 136 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEE 136 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHH
Confidence 899888887543 23333322222334456677775443
No 379
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.69 E-value=39 Score=32.54 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCHHH-------HHHHHHHhhcCC--CC----CCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 721 GVWGTLLGACRVHGNVEL-------AEVASSHLFDLD--PQ----NSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.++--+.+.|+..|+.+. |...++++++.+ |. ......++|.++.+.|+.++|.+.+..+...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 445556666777777444 444455554433 22 2456778889999999999999988877653
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.48 E-value=21 Score=24.13 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNN 646 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~ 646 (844)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666653
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.45 E-value=2.1e+02 Score=28.83 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHhHHHHHHHHHHcCCchHH
Q 003150 481 LDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE-----KDVVCWNSMITRYSQNGKPEEA 535 (844)
Q Consensus 481 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A 535 (844)
-.++..+...+++.+++.+++..-.++++.... .|...|...|......|+..-.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 345555556666666667777666666665432 3667777777777777775433
No 382
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.04 E-value=76 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=13.7
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
|...--.+...+...|++++|++.+-.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444445555555555555555544443
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.77 E-value=2.9e+02 Score=30.21 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=55.1
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLID 594 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 594 (844)
|....-+++..+.++....-...+..+|..-| -+-..|..++..+... .-+.-..+++.+.+..+. |+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455566666666666666666666666644 4556666666666655 344455566655555433 4444455666
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 003150 595 LYAKCGNLDFARTVFDMMQ 613 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~ 613 (844)
.|.+ ++.+.+...|..+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 6665 66666666665543
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.72 E-value=1.3e+02 Score=33.43 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
..+.|+++.|.++..+. .+..-|..|..+..+.|+...|.+.|.+..+ |..|+-.+...|+-+.-..+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34556666666554433 2455666666666666666666666665443 334454555555544333322
Q ss_pred HHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 676 HCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 676 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
...++. |. .+.-.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQ-GK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhh-cc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 222221 11 112223445566666666666554
No 385
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=57.41 E-value=38 Score=36.14 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 711 INSMPFAPDA--GVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 711 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
|....+.|.. .++++.++.+.+++|+..|-..+++++++.|+.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3334566664 567888888999999999999999999999864
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.40 E-value=21 Score=20.83 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 645 (844)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555666666666666665554
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.83 E-value=3.6e+02 Score=31.09 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=42.3
Q ss_pred CChHHHHHHHhcCCC-----CC--cchHHHHHHHH--HhCCChhHHHHHHHHHHhCCC---------CCChhhHHHHHHH
Q 003150 196 RCIDEARYVFDKMSQ-----RD--CVLWNVMLNGY--VTCGESDNATRAFKEMRISET---------KPNSVTFACILSV 257 (844)
Q Consensus 196 g~~~~A~~~f~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~ 257 (844)
++...|.+.++.+.. .| ...+-.++.+. .+.+..+++++.++++..... .|-..+|..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 566666666665432 11 12222233332 244556677777776643221 3345567777776
Q ss_pred hh--ccCCchHHHHHHHHHH
Q 003150 258 CA--VEAMTDFGTQVHGVVV 275 (844)
Q Consensus 258 ~~--~~~~~~~a~~~~~~~~ 275 (844)
|+ ..|++..+++.+..+.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 65 4556556666655553
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.82 E-value=38 Score=26.24 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=34.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHHHHHHHH
Q 003150 629 CHGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 629 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
...+.++|+..|...++.-..|.. .++..++.+++..|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888875333332 37778888999999988887753
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.70 E-value=28 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.035 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHhhcCCCCC
Q 003150 723 WGTLLGACRVHGNVELAEVA--SSHLFDLDPQN 753 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 753 (844)
|-.+...+...|+.+.|+.+ ++-+..++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 45566666777777777777 44665565543
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.61 E-value=2.9e+02 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=34.0
Q ss_pred hHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchh
Q 003150 518 CWNSMITRYSQ---NGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLH 565 (844)
Q Consensus 518 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 565 (844)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455566655 4789999999999999998888766655555544443
No 391
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.56 E-value=2.9e+02 Score=29.94 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=32.9
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC
Q 003150 620 WNSMIAAYGC---HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG 666 (844)
Q Consensus 620 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 666 (844)
...+++++.+ .++.+.|+.++.+|.+.|..|..+.-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3444555544 4789999999999999998887766555555555544
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.00 E-value=1.5e+02 Score=26.41 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003150 617 EAAWNSMIAAYGCHGH-LKDSLALFHEMLNNKIKPDHVTFLAIISACGH 664 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 664 (844)
..+|.+++.+.+...- ---+..+|+-|.+.+.+++..-|..++.+|.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3345555555543333 22334455555555555555555555555544
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.98 E-value=19 Score=35.76 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 700 RAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 700 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
+.|+.++|..+|+-. ...|+ +.+...+......+++.-+|.+.|-+++.++|.|+.+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 456666666666544 34444 2333333333344556666777777777777776665443
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.86 E-value=40 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS 660 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 660 (844)
+.-++.+.|++++|.+..+.+++ +.|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 45677888888888888888888 7887765554443
No 395
>PRK10941 hypothetical protein; Provisional
Probab=55.65 E-value=61 Score=32.48 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 692 ACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
+.+-.+|.+.+++++|+...+.+ .+.|+ +.-|+--.-.+.+-|....|..-++..++.-|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555666777777777777666 44454 3456655566777777777777777777777777655443
No 396
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=55.51 E-value=2.9e+02 Score=29.55 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003150 590 SVLIDLYAKCGNLDFARTVFDMMQRK---QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK 647 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 647 (844)
..|+.-|...|++.+|...++++--| ..+.+.+++.+.-+.|+-..-+.++++....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34677788888888888888876654 46678888888877777776666666665554
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.44 E-value=1.4e+02 Score=31.79 Aligned_cols=53 Identities=6% Similarity=0.102 Sum_probs=33.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--hhCCHHHHHHHHHHhHh
Q 003150 627 YGCHGHLKDSLALFHEMLNNKIKPDHV--TFLAIISACG--HAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 680 (844)
+..++++..|.++|+++.+. +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33667888888888888776 555444 3333434443 34566778887777655
No 398
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.15 E-value=1.8e+02 Score=27.03 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 725 TLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 725 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
..+..|.+.|.+++|.+++++.++ +|++...-..|..+-.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 445669999999999999999998 8877666555554433
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.91 E-value=20 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 758 VLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
..|+.+|...|+.+.|.++.++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357778888888888888887776543
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.22 E-value=2.9e+02 Score=29.21 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR-----K-QEAAWNSMIAAYGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 645 (844)
...+.-+.+-|..||+++.|.+.+.+... + -+..|-.+|..-.-.|++......-.+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34556788999999999999999988653 1 233565666666666777766666666554
No 401
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.64 E-value=51 Score=33.48 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC--C--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSM--P--FAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSN 762 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 762 (844)
.+|--=++-|.+..++..|.+.|.+. . -.|| ++.|+.-..+-.-.||+..++.-..+++.++|.+...|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34545566778888999999888776 1 1344 3666666666666789999999999999999999998888888
Q ss_pred HHHhcCCcchHHH
Q 003150 763 IHADAGQWGNVNK 775 (844)
Q Consensus 763 ~y~~~g~~~~a~~ 775 (844)
+.....++++|..
T Consensus 162 c~~eLe~~~~a~n 174 (390)
T KOG0551|consen 162 CLLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777544443
No 402
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.40 E-value=3.9e+02 Score=30.39 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc---CCcchHHH
Q 003150 703 RLNKALETINSMPFAPDAGVWGTLLGACRV----HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA---GQWGNVNK 775 (844)
Q Consensus 703 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~ 775 (844)
+.+.+..++.+....-+......|...+.. ..+.+.|...+.++-+.. +.....|+.++-.- .++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 344555555555333333333333332221 125666666666655544 45555666665442 11566777
Q ss_pred HHHHHHH
Q 003150 776 IRRLMKE 782 (844)
Q Consensus 776 ~~~~m~~ 782 (844)
++.+..+
T Consensus 531 ~~~~~~~ 537 (552)
T KOG1550|consen 531 YYDQASE 537 (552)
T ss_pred HHHHHHh
Confidence 6665544
No 403
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.41 E-value=93 Score=27.66 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=43.6
Q ss_pred hhHhHHHHHHHhcCChhhHhhhccCCC---------CCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCcccHH
Q 003150 82 ALGAKILGMYVLCGGFIDAGNMFPRLD---------LATSLPWNRMIRVFAKMGL-FRFALLFYFKMLSCGIRPDNHTFP 151 (844)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~a~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~ 151 (844)
...|.++.-.+..+++.....+++.++ ..+..+|..++.+.++... ---+..+|.-|++.+.+++...|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 334555555555555555444444431 2344456666666655544 234556666666666666666666
Q ss_pred HHHHHHhc
Q 003150 152 SVMKACSA 159 (844)
Q Consensus 152 ~ll~~~~~ 159 (844)
.++.+|.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 66666654
No 404
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.35 E-value=1.2e+02 Score=26.06 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 705 NKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 705 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.+++.-+-.+.+.|++.+..+.+.+|++-+|+..|.+++|-+-..-++....|
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y 121 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVY 121 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHH
Confidence 34444444557889999999999999999999999999998765544443334
No 405
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.33 E-value=2.2e+02 Score=26.86 Aligned_cols=85 Identities=8% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-CChHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCC
Q 003150 594 DLYAKCGNLDFARTVFDMMQR-KQEAAWN-----SMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQ 667 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~-~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 667 (844)
..+..+|++++|..-++.... +....+. .|.....+.|.+++|+.+++...+.+..+ .....-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCc
Confidence 344445555555555553331 2111111 22334455555555555555443322111 111122234555566
Q ss_pred HHHHHHHHHHhHh
Q 003150 668 VEAGIHYFHCMTE 680 (844)
Q Consensus 668 ~~~a~~~~~~~~~ 680 (844)
-++|+.-|+....
T Consensus 175 k~~Ar~ay~kAl~ 187 (207)
T COG2976 175 KQEARAAYEKALE 187 (207)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655554
No 406
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.02 E-value=1.6e+02 Score=28.70 Aligned_cols=81 Identities=10% Similarity=-0.054 Sum_probs=46.1
Q ss_pred HHhcCCHHHHHHHHHhcC--CCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhhhCCHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQ--RKQEA-AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLA-IISACGHAGQVEAG 671 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~a 671 (844)
|....+++.|...+.+.. .|... =|+.-+..|.+..+++.+..--.+.++ +.||.+--.. +-.+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334455666666665443 24443 345556666667777766666666665 6676653333 33345555666777
Q ss_pred HHHHHHh
Q 003150 672 IHYFHCM 678 (844)
Q Consensus 672 ~~~~~~~ 678 (844)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7666665
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.55 E-value=2.4e+02 Score=33.02 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=89.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHH
Q 003150 594 DLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIH 673 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 673 (844)
+....||+++.|.+.-..+. |...|..|...-...|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 44567899999988776654 667899999999999999999999988755 2222233566788888766
Q ss_pred HHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 674 YFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 674 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
+.+.+.. ..|.. .....-.-.|+.++-..+++..+..|-+ |.+ -..+|.-++|+++.+++-..
T Consensus 720 m~~iae~----r~D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--ylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 720 MMKIAEI----RNDAT---GQFQNALYLGDVKERVKILENGGQLPLA--YLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHh----hhhhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--HHH----HhhcCcHHHHHHHHHhhccc
Confidence 6554432 22211 1111112368889989999888654422 222 34688889999998887663
No 408
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.03 E-value=32 Score=34.26 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=39.6
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.++.|+.+.|..+++.++++.|+++.+..-++...-...+.=+|..++-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 4678999999999999999999999999888877665555555555543
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.59 E-value=46 Score=31.47 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 003150 716 FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 716 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 751 (844)
..|++.++..++.++...|+.++|++..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456777777777777777777777777777777777
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.35 E-value=1.5e+02 Score=24.62 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=6.2
Q ss_pred hhCCHHHHHHHHHHh
Q 003150 664 HAGQVEAGIHYFHCM 678 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~ 678 (844)
+.|.-+++...+.++
T Consensus 81 klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 81 KLGLASALESRLTRL 95 (116)
T ss_dssp HCT-HHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHH
Confidence 344444444444433
No 411
>PHA03100 ankyrin repeat protein; Provisional
Probab=49.19 E-value=4.1e+02 Score=29.42 Aligned_cols=13 Identities=15% Similarity=0.421 Sum_probs=6.2
Q ss_pred ccCChHHHHHHHh
Q 003150 194 ENRCIDEARYVFD 206 (844)
Q Consensus 194 ~~g~~~~A~~~f~ 206 (844)
..|+.+-...+++
T Consensus 117 ~~~~~~iv~~Ll~ 129 (480)
T PHA03100 117 KSNSYSIVEYLLD 129 (480)
T ss_pred ccChHHHHHHHHH
Confidence 4455544444444
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.88 E-value=1.1e+02 Score=32.31 Aligned_cols=48 Identities=10% Similarity=0.220 Sum_probs=27.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH------------HHHHHHHHHhhhCCHHHHHHHHHHh
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDHV------------TFLAIISACGHAGQVEAGIHYFHCM 678 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~~------------t~~~ll~a~~~~g~~~~a~~~~~~~ 678 (844)
...+.++...|...++.+ .|+.. |+..+-..|.+.|+.+.|.+++++.
T Consensus 7 s~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667777777777654 55442 1222333455666666666665554
No 413
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.56 E-value=2.8e+02 Score=27.37 Aligned_cols=186 Identities=11% Similarity=0.131 Sum_probs=117.3
Q ss_pred cCCchHHHHHHHHHHHCCCCCCh---HHHHHHHHHHhchhchHHHHHHHHHHHH---h--CCCCchhHHHHHHHHHHhcC
Q 003150 529 NGKPEEAIDLFRQMAIEGVKHDC---MSLSAALSACANLHALHYGKEIHSLMIK---D--SCRSDNIAESVLIDLYAKCG 600 (844)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~---~--g~~~~~~~~~~li~~y~~~g 600 (844)
...+++|+.-|++..+..-.-.. ..+.-++....+.+++++....+.++.. + .-..+....|++++.-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44788899999888764322223 3445567777888888888777766642 2 22345567788888887777
Q ss_pred CHHHHHHHHHhcCC-----CChHHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCH-------HHHHHHHH
Q 003150 601 NLDFARTVFDMMQR-----KQEAAW----NSMIAAYGCHGHLKDSLALFHEMLNNKIK----PDH-------VTFLAIIS 660 (844)
Q Consensus 601 ~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~-------~t~~~ll~ 660 (844)
+.+--.++++.-.+ +|...| +.|...|...|.+.+-.+++.++.+.--. -|. ..|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 77766666654332 343333 45677788888888888888888663211 121 23444555
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHH----HHHHHhcCCHHHHH-HHHHhC
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACM----VDLFGRAGRLNKAL-ETINSM 714 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~-~~~~~~ 714 (844)
.|....+-..-..+++.........|.+.....+ +.+..|.|++++|- ++|+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 6666666667677777765544556666554433 44566788888875 444444
No 414
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.37 E-value=24 Score=40.38 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=58.9
Q ss_pred HHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003150 658 IISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE 737 (844)
Q Consensus 658 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 737 (844)
+|.-+.+.|-.+-|+.+.+.-... .++...+|+++.|++.-++. .|..+|..|......+||.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchH
Confidence 344456667776666654332221 23445688888888888776 46778888888888888888
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 738 LAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
.|+..|++.-..+ .|+-+|.-.|+.++
T Consensus 690 IaEm~yQ~~knfe--------kLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFE--------KLSFLYLITGNLEK 716 (1202)
T ss_pred HHHHHHHHhhhhh--------heeEEEEEeCCHHH
Confidence 8888888754432 34444555555444
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.52 E-value=56 Score=30.91 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=19.9
Q ss_pred cCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 682 YGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 682 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
....|++..|..++.++...|+.++|.+...++
T Consensus 138 l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 138 LRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666666666666666666665555
No 416
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.70 E-value=63 Score=28.66 Aligned_cols=67 Identities=18% Similarity=0.064 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchH
Q 003150 704 LNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNV 773 (844)
Q Consensus 704 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 773 (844)
.++|.++++-|+ .....-.........|++.-|..+.+.++..+|+|..+-.+.+.+|.+.|.-.+.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 456677777763 2223334445567889999999999999999999999999999988777655443
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.05 E-value=2.1e+02 Score=27.92 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHhhcCCCCC
Q 003150 732 VHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
..++.+.|...++++++++|+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3457789999999999999864
No 418
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.02 E-value=2.9e+02 Score=26.82 Aligned_cols=138 Identities=16% Similarity=0.196 Sum_probs=75.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHH
Q 003150 492 TDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGK 571 (844)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 571 (844)
+..|.+.-++.-|...++++.+|= .+-. -|--|.+..+..--.++.+-...+++.-+...+..++ +...|+..+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEPI-QSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEPI-QSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhhH-Hhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Confidence 456777777766666666665541 1111 1222333333322233333333445544444443333 23456666665
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003150 572 EIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD 651 (844)
Q Consensus 572 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 651 (844)
..++.-... -|. -.+..+|+-..+|.+.....|+..| ..+++++|.+++.++-+.|+.|.
T Consensus 213 NnLQst~~g------------------~g~-Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 213 NNLQSTVNG------------------FGL-VNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHhcc------------------ccc-cchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 554433221 111 1244566666677777777777654 45689999999999999999887
Q ss_pred HH
Q 003150 652 HV 653 (844)
Q Consensus 652 ~~ 653 (844)
..
T Consensus 273 Di 274 (333)
T KOG0991|consen 273 DI 274 (333)
T ss_pred HH
Confidence 65
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.12 E-value=50 Score=26.81 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCC---------CchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 731 RVHGNVELAEVASSHLFDLDPQN---------SGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
.+.||+..|...+.+.++..... ..+...++.++...|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677777777666666543221 1234557778888899999888777654
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.09 E-value=1.3e+02 Score=34.21 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHhhhCCHHHHHHHHHHhHhh-cCCCC
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVT----------FLAIISACGHAGQVEAGIHYFHCMTEE-YGIPA 686 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----------~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p 686 (844)
.+...++-.|....+++.-+++.+.+.. -||..- |.--++-=.+-|+-+.|+...-.+.++ ..+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455566677777777777777777766 343321 111222223456777777665555442 23445
Q ss_pred CchH-----HHH--HHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 003150 687 RMEH-----YAC--MVDLFGRAGRLNKALETINSM-PFAPD 719 (844)
Q Consensus 687 ~~~~-----~~~--l~~~~~~~g~~~~A~~~~~~~-~~~p~ 719 (844)
|..+ |.- +...|..++..+.|.+++++. ...|.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 5321 110 011222344456666666665 44454
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.64 E-value=1.5e+02 Score=25.45 Aligned_cols=59 Identities=12% Similarity=0.298 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 003150 635 DSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMV 695 (844)
Q Consensus 635 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 695 (844)
+..+-++.+..-.+.|+......-|.||.+.+++.-|.++|+.++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34445566666678899999999999999999999999999988764 444334555554
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.46 E-value=52 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 650 PDHVTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 650 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
-|..-...++.++...|++++|.++.+.+..
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445556666666666666666655544
No 423
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.36 E-value=2.8e+02 Score=30.76 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 003150 591 VLIDLYAKCGNLDFARTVFDMMQ 613 (844)
Q Consensus 591 ~li~~y~~~g~~~~A~~~~~~~~ 613 (844)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 57778999999999999998886
No 424
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=43.15 E-value=1.7e+02 Score=25.30 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSMPFAPDA-GVWGTLLGACRVHGNVELAEVASSHLF 747 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 747 (844)
...+-.++..++.=.|..++|.+++...+..+.. ..-..++..|....+-++-..+-++.+
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3455667778888889999999999888776765 455568888888877776666655543
No 425
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.74 E-value=4.3e+02 Score=28.10 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=30.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHh--hhCCHHHHHHHHH
Q 003150 626 AYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAII----SACG--HAGQVEAGIHYFH 676 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll----~a~~--~~g~~~~a~~~~~ 676 (844)
.+...+++..|.++|+++.+..++|+...+...+ .+|. ..-+.++|.+.++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4556788999999999998876655554433222 2222 2334556666655
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.27 E-value=1.5e+02 Score=24.94 Aligned_cols=27 Identities=22% Similarity=0.419 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003150 114 PWNRMIRVFAKMGLFRFALLFYFKMLS 140 (844)
Q Consensus 114 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 140 (844)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388999999999999999999998877
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.91 E-value=1.8e+02 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 003150 417 MFTAMISGYVLNGISHEALEKFRWLIQ 443 (844)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (844)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999887
No 428
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=41.39 E-value=40 Score=25.91 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCcChHHHHHHHHHHHHhcCcccCCC
Q 003150 800 THLFVAADESHSESAQMLNILLPELEKEGYIPQPC 834 (844)
Q Consensus 800 ~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 834 (844)
+-.|-..+.......++|......+++.||-|-.-
T Consensus 4 Tm~F~~~~~~~~~~~~iL~~Vy~AL~EKGYnPinQ 38 (79)
T PF06135_consen 4 TMMFKFEKEKEKEIREILKQVYAALEEKGYNPINQ 38 (79)
T ss_pred ceEeeCCCcchhhHHHHHHHHHHHHHHcCCChHHH
Confidence 34566666656677888999999999999998443
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=41.07 E-value=6.8e+02 Score=29.66 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=27.0
Q ss_pred hhchHHHHHHHHHHHHh----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003150 564 LHALHYGKEIHSLMIKD----SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ 613 (844)
Q Consensus 564 ~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 613 (844)
.|+++.+..+-+..... -..+....+..+..+..-.|++++|..+..+..
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 34555555555544432 233444555556666666677777666655443
No 430
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=40.50 E-value=2.3e+02 Score=30.45 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhcC
Q 003150 715 PFAPDAGVWGTLLGA-CRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 715 ~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~ 749 (844)
|-.||..-|-..-++ |..+|+++.-+++++.++++
T Consensus 331 psh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~m 366 (615)
T KOG0508|consen 331 PSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDM 366 (615)
T ss_pred CCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHH
Confidence 445665444333333 56677777777777777653
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.27 E-value=3.7e+02 Score=26.41 Aligned_cols=57 Identities=9% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHh-chhchHHHHHHHHHHH
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACA-NLHALHYGKEIHSLMI 578 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~~~~~~~ 578 (844)
++...-+.++++++.+.++++...+...+..--+.+-.+|- ..|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45566778888888888888888766666555555555552 2345555555555554
No 432
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.08 E-value=3.3e+02 Score=25.81 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNN 646 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 646 (844)
...+.++..+...|+++.|-+.|.-++..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34556666666777777777777766653
No 433
>PRK05473 hypothetical protein; Provisional
Probab=39.52 E-value=40 Score=26.37 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=28.0
Q ss_pred CEEEEEEeCCCCCcChHHHHHHHHHHHHhcCcccCC
Q 003150 798 NITHLFVAADESHSESAQMLNILLPELEKEGYIPQP 833 (844)
Q Consensus 798 ~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 833 (844)
+.+-.|-..+...-..++||......+++.||-|-.
T Consensus 5 ~~Tm~F~~~~~~~~~v~eiL~~Vy~AL~EKGYNPin 40 (86)
T PRK05473 5 DKTMRFDFDDEKKKDVREILTTVYDALEEKGYNPIN 40 (86)
T ss_pred CCceeeeCCcccHHHHHHHHHHHHHHHHHcCCChHH
Confidence 345567777665557888899999999999999843
No 434
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.09 E-value=2.5e+02 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=11.9
Q ss_pred HHHHHhcCCcchHHHHHHH
Q 003150 761 SNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 761 ~~~y~~~g~~~~a~~~~~~ 779 (844)
+..+...|+.++|.+.++.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 3445567888888876663
No 435
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=38.96 E-value=2.7e+02 Score=27.90 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHhhcCCCCCCchHHHHHHH
Q 003150 741 VASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
-++--++.+||-.|+.+-.+..+
T Consensus 265 iLyLLv~R~DPA~Pss~p~i~kL 287 (309)
T PF07163_consen 265 ILYLLVVRLDPASPSSLPWIYKL 287 (309)
T ss_pred HHHHHheeecCCCCCcchHHHHH
Confidence 34555667888888776655443
No 436
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.15 E-value=4.8e+02 Score=27.08 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh---cCCcchHHHHHH
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD---AGQWGNVNKIRR 778 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~ 778 (844)
+...+..++..+.+-.+.+....-+++++..+|+++..|....+.... .-..++...++.
T Consensus 64 ~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 64 SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 357777788888777788888888888888888888887766554433 223445555444
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.69 E-value=2.1e+02 Score=22.84 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH
Q 003150 598 KCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDS 636 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 636 (844)
..|+.+.|.+++..+. +....|...+.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 5555566666666655554433
No 438
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.42 E-value=1.7e+02 Score=23.35 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=29.6
Q ss_pred cCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHH
Q 003150 295 KSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEAL 334 (844)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 334 (844)
..|+.+.|+.+++.++ +....|..++.++-..|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888888888 77778888888887777655443
No 439
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.12 E-value=4.2e+02 Score=25.81 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=83.7
Q ss_pred hHHHHHHHhcCChhhHhhhccCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCch
Q 003150 85 AKILGMYVLCGGFIDAGNMFPRLDLATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLR 164 (844)
Q Consensus 85 ~~l~~~~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 164 (844)
..-+..|.+.-+|.-|...++++-+|=..-+ + |--|.+..+..-.-++.+-....++..+...+..++ +...||.+
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEPIQSRC-A-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEPIQSRC-A-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhhHHhhh-H-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHH
Confidence 3345556666666666666666544422111 1 112333333333334444455566666665555554 34556666
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003150 165 FGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISET 244 (844)
Q Consensus 165 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 244 (844)
+|...++.-.. ..|. -.+..+|.-..+|....-..++..+. .+++++|.+++.++-+.|.
T Consensus 210 QalNnLQst~~------------------g~g~-Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 210 QALNNLQSTVN------------------GFGL-VNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHHHhc------------------cccc-cchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCC
Confidence 66554433221 1121 22345666666777777777776654 5789999999999999998
Q ss_pred CCChhhHHHHHHHhhcc
Q 003150 245 KPNSVTFACILSVCAVE 261 (844)
Q Consensus 245 ~p~~~t~~~ll~~~~~~ 261 (844)
.|... .+++++.+-..
T Consensus 270 sp~Di-i~~~FRv~K~~ 285 (333)
T KOG0991|consen 270 SPEDI-ITTLFRVVKNM 285 (333)
T ss_pred CHHHH-HHHHHHHHHhc
Confidence 87543 34455555433
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.88 E-value=1.2e+02 Score=20.90 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=20.9
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 003150 223 YVTCGESDNATRAFKEMRISETKPNSVTFACILS 256 (844)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 256 (844)
..+.|-..++..++++|.+.|+.-+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666667777766666666665555543
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.49 E-value=1.1e+02 Score=24.83 Aligned_cols=24 Identities=29% Similarity=0.170 Sum_probs=16.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 726 LLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
+.......|+.+.|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444455667777777777777664
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.73 E-value=9.5e+02 Score=29.54 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKALETINSMPFAPDA----GVWGTL 726 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l 726 (844)
|..++.-+...+..|++.++-..+++. ++|+ +.+++++.+-....|.+-+|.+.+-+- ||. ...+.|
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRql 1060 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHH
Confidence 455555666666666666666555552 3332 345566666666666666666666554 332 344555
Q ss_pred HHHHHhcCCHHH------------HHH-HHHHhhcCCC-CCCchHHHHHHHHHhcCCcchHHH
Q 003150 727 LGACRVHGNVEL------------AEV-ASSHLFDLDP-QNSGYYVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 727 l~~~~~~g~~~~------------a~~-~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~ 775 (844)
+...+..|..+. .+. +.+.+-.-.| ....+|.+|--.+...++|.+|.-
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 555555554432 111 2222222222 234455555555666666666554
No 443
>PF14162 YozD: YozD-like protein
Probab=34.68 E-value=53 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHHhcCcccCCC
Q 003150 812 ESAQMLNILLPELEKEGYIPQPC 834 (844)
Q Consensus 812 ~~~~~~~~l~~~~~~~g~~~~~~ 834 (844)
.+++|.+-...++.+.||+|...
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcHH
Confidence 46788999999999999999753
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.17 E-value=1.8e+02 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHhhc--CCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 003150 738 LAEVASSHLFD--LDPQNSGYYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 738 ~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
.+..+++.+.. +.-+.+..|...|..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56667666654 4556677888888888888888888888763
No 445
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.06 E-value=8e+02 Score=28.48 Aligned_cols=80 Identities=9% Similarity=-0.223 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCCCchHHHHHHHHHhcCCcc
Q 003150 695 VDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD---PQNSGYYVLLSNIHADAGQWG 771 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~ 771 (844)
+..+...|+..+|...+..+--..+......+.......|..+.+..+..+....+ -.-|..|.....-++..-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 45666778888888777766223455555566666677888888887776543211 011233444444444444455
Q ss_pred hHH
Q 003150 772 NVN 774 (844)
Q Consensus 772 ~a~ 774 (844)
.+.
T Consensus 494 ~~l 496 (644)
T PRK11619 494 QSY 496 (644)
T ss_pred HHH
Confidence 444
No 446
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.46 E-value=75 Score=33.37 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 003150 693 CMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
-|+-+|.+.++.+-|+.-..+-
T Consensus 233 klv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhh
Confidence 3566777777777777554443
No 447
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.98 E-value=1.9e+02 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.615 Sum_probs=9.5
Q ss_pred HHHHHHHcCCchHHHHHHHHH
Q 003150 522 MITRYSQNGKPEEAIDLFRQM 542 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m 542 (844)
++..|...++.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555554443
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.98 E-value=1.2e+02 Score=32.74 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=62.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhhCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCH
Q 003150 627 YGCHGHLKDSLALFHEMLNNKIKPDHVTFLAII-SACGHAGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRL 704 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 704 (844)
+...++++.|..++.+.++ +.||...|...= .++.+.+++..|+.=+..+.+ ..|+ ...|--=+.++.+.++.
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhHHHH
Confidence 4455677888888888888 678776554443 567777777777776666554 2343 33333333444555667
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 003150 705 NKALETINSM-PFAPDAGVWGTLLGACRV 732 (844)
Q Consensus 705 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 732 (844)
.+|+..++.. .+.|+..-..-.+.-|-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 7777777766 556666555555555543
No 449
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=32.78 E-value=2.8e+02 Score=25.19 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=52.6
Q ss_pred HhhhCCHHHHHHHHHHhHhh---------------cCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEE---------------YGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDA-GVWGT 725 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~---------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~ 725 (844)
+.-.+.|.+..++|..+... ||-+--..+-.+++.++.=.|..++|.+++....+-++. ..-..
T Consensus 74 ~vvdcSW~~~~~~f~~l~~~~~R~LP~LvAaNPVNYGkp~kLss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e 153 (179)
T COG2042 74 TVVDCSWNRVERVFKKLRGREHRRLPFLVAANPVNYGKPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKE 153 (179)
T ss_pred EEEEccHHHHHHHHHhcCccccccccHhhhcCCcccCCcchhchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHH
Confidence 44455666666666665431 222223445567777888889999999998888665654 45556
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 003150 726 LLGACRVHGNVELAEVASSHL 746 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~ 746 (844)
+|..|.+..+-.+..++-++.
T Consensus 154 ~Le~Y~~a~~s~eVveiq~~~ 174 (179)
T COG2042 154 LLEEYSNAEDSAEVVEIQEEY 174 (179)
T ss_pred HHHHHHhccchHHHHHHHHHH
Confidence 777777766654444444443
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.70 E-value=81 Score=31.80 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAII 659 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 659 (844)
||..|..-.+.||+++|+.+++|..+.|+.--..||..-+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 6688888889999999999999999988765555665433
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.79 E-value=56 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=25.0
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003150 526 YSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSAC 561 (844)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 561 (844)
....|.-..|..+|++|.+.|-.||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999985 45555443
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.33 E-value=62 Score=28.09 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=25.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003150 123 AKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKAC 157 (844)
Q Consensus 123 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 157 (844)
...|.-.+|-.+|..|.+.|-+||. ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4446677899999999999999875 66776654
No 453
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=3e+02 Score=30.59 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=0.0
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCC------------chHHHHHHHHHHhcCCHHHHHHHHHhC------CCCCCHHH-
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPAR------------MEHYACMVDLFGRAGRLNKALETINSM------PFAPDAGV- 722 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~- 722 (844)
+.+...++++...|..... -.+|+ +.+.-.|.+++...|+.+-|.+++++. -+.|....
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred -------------------HHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHH
Q 003150 723 -------------------WGTLLGACRVHGNVELAEVASSHLFDLDPQ-NSGYYVLLSNIHA 765 (844)
Q Consensus 723 -------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~ 765 (844)
....+....+.|-...|....+-++.++|. ||-.-..+..+|+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.47 E-value=85 Score=23.11 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003150 621 NSMIAAYGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 621 ~~li~~~~~~g~~~~A~~l~~~m~~ 645 (844)
-.+|.+|.+.|++++|.++.+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456677777777777776666554
No 455
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=30.35 E-value=4.1e+02 Score=29.52 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHh
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG-YYVLLSNIHAD 766 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~ 766 (844)
+..-.||-+-+....++.-|.++.++.++. ...+|.+..-+|.+.+++..|..-+++++++.-+|.. ...-+.|. .+
T Consensus 556 ~~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ie 633 (1141)
T KOG1811|consen 556 PAASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IE 633 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hc
Confidence 344566777777777777777777776532 2357888888899999999999999998887654433 33333333 33
Q ss_pred cCCcchHHHHHHHHHHcCCccCC
Q 003150 767 AGQWGNVNKIRRLMKERGVQKIP 789 (844)
Q Consensus 767 ~g~~~~a~~~~~~m~~~~~~~~~ 789 (844)
-|-.-++..+++ |-+.-.++.|
T Consensus 634 Ggpp~dVq~Vre-m~dhlak~ap 655 (1141)
T KOG1811|consen 634 GGPPRDVQDVRE-MLDHLAKPAP 655 (1141)
T ss_pred CCCcchHHHHHH-HHHHhccCCc
Confidence 443333333333 4444445544
No 456
>PRK02287 hypothetical protein; Provisional
Probab=30.34 E-value=3e+02 Score=25.27 Aligned_cols=61 Identities=8% Similarity=0.008 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSMPFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
..+..+++.++.=.|..++|.++++.....+.. ..-..++..|....+-++...+-++.++
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 345567777777888888888888887666664 4556678888877777776666665544
No 457
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.09 E-value=32 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 733 HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 733 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.|+.+.|...|++.+..=-+-.++-+. .....-.|++|.++..+|+.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 467777777777765421000000000 23455679999999999975
No 458
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.68 E-value=1.7e+02 Score=29.18 Aligned_cols=58 Identities=22% Similarity=0.092 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 725 TLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 725 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.+=.++...++.+.|....++++.++|+++.-..--+-+|++.|-..-|.+-.....+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3444567788999999999999999999998888889999999999888887776444
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.43 E-value=86 Score=31.63 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHH
Q 003150 211 RDCV-LWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFA 252 (844)
Q Consensus 211 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 252 (844)
+|.. -||.-|...++.||+++|+.++++.++.|+.--..||.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3443 46799999999999999999999999988765555553
No 460
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.37 E-value=7.8e+02 Score=26.91 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=63.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCC-CCCCh--H-----HHHHHHH-HHhchhchHHHHHHHHHHHHhCCCCchhH--HH
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIEG-VKHDC--M-----SLSAALS-ACANLHALHYGKEIHSLMIKDSCRSDNIA--ES 590 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~-----t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~ 590 (844)
++..-.-.|++.+|++-..+|.+-- -.|.. . ....++. -|...+.++.|..-|....+.--..|... ..
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455789999999888887632 12331 1 1112222 23445666666666666555433333322 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHH--------HHH--HHhcCChHHHHHHHHHHHH
Q 003150 591 VLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSM--------IAA--YGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 591 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~~g~~~~A~~l~~~m~~ 645 (844)
.+.-.|.+.|+.++-.++++.+..+|..++.+- +.| ....+++.+|..++.+-.+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 355566677777776666666665543322210 111 1244566666666555544
No 461
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=4.9e+02 Score=24.53 Aligned_cols=52 Identities=8% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC------CChHHHHHHHH-HHHhcC--ChHHHHHHHHHHHHC
Q 003150 595 LYAKCGNLDFARTVFDMMQR------KQEAAWNSMIA-AYGCHG--HLKDSLALFHEMLNN 646 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g--~~~~A~~l~~~m~~~ 646 (844)
.....|++++|..-++.+.+ +-...|+.+.. +++.++ .+-+|..++.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 33455667777776666543 12334555554 566665 355666666555443
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.35 E-value=5.9e+02 Score=25.46 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=43.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACG 663 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 663 (844)
-++.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...+ +|...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e--------------~dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE--------------ADLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS----------------HHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc--------------hhHHHHHHHH-HHH
Confidence 4677788899999999999999887754433322222222222222222211 1222222333 355
Q ss_pred hhCCHHHHHHHHHHhHhh
Q 003150 664 HAGQVEAGIHYFHCMTEE 681 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~ 681 (844)
..|++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877776653
No 463
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.97 E-value=2e+02 Score=19.85 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=20.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS 660 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 660 (844)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666677777777776666666555543
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.70 E-value=4.1e+02 Score=25.72 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP---DHVTF--LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYAC 693 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 693 (844)
-.|.||--|.-+..+.+|.+.|.+ +.|+.| |..++ ..-+......|++++|++..+...-. -+..|.+.+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555555555555555555543 233444 22222 22344556677777777766665332 23333322221
Q ss_pred -----HHHHHHhcCCHHHHHHHHHhC
Q 003150 694 -----MVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 694 -----l~~~~~~~g~~~~A~~~~~~~ 714 (844)
+|. +.|.|..++|+++.+.-
T Consensus 105 Lq~q~lIE-liR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIE-LIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHH-HHHhhhHHHHHHHHHHH
Confidence 222 34677777777777653
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.48 E-value=90 Score=31.40 Aligned_cols=73 Identities=5% Similarity=0.028 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH-HHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTL-LGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
|+..|...+.-..+.|.+.+.-.++.+. ...| |+..|-.- ..-+..++|++.+...+.+.+.++|++|..|.-
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3444444443333444444444444444 2233 34555431 122456788888888888888888888887654
No 466
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.43 E-value=2.5e+02 Score=31.19 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHhhh--CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCCC--HH
Q 003150 648 IKPDHVTFLAIISACGHA--GQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR-AGRLNKALETINSM-PFAPD--AG 721 (844)
Q Consensus 648 ~~pd~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~p~--~~ 721 (844)
--|+..|..+++.-...- ..-+-|-.+|..|.+ .+-|--...+ +..+|.| .|+...|..-+... ..+|. .+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346777776666544332 234556677777754 4445332222 3445555 48888888877766 33443 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
..-.|.+.....|-.-.|-..+.+.+.+.-..|-++..++++|....+.+.|.+.++...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 445667777777877789999999999998899999999999999999999999776543
No 467
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.88 E-value=6.4e+02 Score=25.37 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=80.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCChHHH-------HHHHHHHhchhchHHHHHHHHH----HHHhCCCCchhHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSL-------SAALSACANLHALHYGKEIHSL----MIKDSCRSDNIAESV 591 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~ 591 (844)
.+-..+.+++++|+..+.+....|+..|..+. ..+...+...|+...-.+.... |....-+....+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34456677888888888888888877765543 3444455555554433333222 222222233444555
Q ss_pred HHHHHHh-cCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHH
Q 003150 592 LIDLYAK-CGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALF----HEMLNNKIKPDHVTFLA 657 (844)
Q Consensus 592 li~~y~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ 657 (844)
|++.+.. ...++.-+++.....+ +. ...-..+|..+.+.|.+.+|+.+. .++.+-.-+|+.++...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 5555532 3345555555443332 11 112234566777777777777654 34444444555554443
Q ss_pred HHH-HHhhhCCHHHHHHHHHHh
Q 003150 658 IIS-ACGHAGQVEAGIHYFHCM 678 (844)
Q Consensus 658 ll~-a~~~~g~~~~a~~~~~~~ 678 (844)
+=+ +|-...++..+..-+..+
T Consensus 170 lESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHH
Confidence 322 344444444444444433
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.28 E-value=5.8e+02 Score=24.74 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=58.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HhhhCCHHHHHHHHHHhHhhcCCCC-C--chHH--HHHHHHHHhcCCHHHHHHHHH
Q 003150 639 LFHEMLNNKIKPDHVTFLAIISA-CGHAGQVEAGIHYFHCMTEEYGIPA-R--MEHY--ACMVDLFGRAGRLNKALETIN 712 (844)
Q Consensus 639 l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p-~--~~~~--~~l~~~~~~~g~~~~A~~~~~ 712 (844)
..+++.. +.++..-++.|+-- +.+.|..+ |.+.|.. ..+++| . ...+ ..-|......|++++|++.++
T Consensus 15 w~~~~~~--~~~~~~d~n~LVmnylv~eg~~E-aA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 15 WEEQLMK--VSVMREDLNRLVMNYLVHEGYVE-AAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hHHHHhc--cCcchhhHHHHHHHHHHhccHHH-HHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 3444444 66666666666654 45555555 4444432 246666 2 2222 245677789999999999999
Q ss_pred hC-C--CCCCH--HHHHHHHHH--HHhcCCHHHHHHHHHH
Q 003150 713 SM-P--FAPDA--GVWGTLLGA--CRVHGNVELAEVASSH 745 (844)
Q Consensus 713 ~~-~--~~p~~--~~~~~ll~~--~~~~g~~~~a~~~~~~ 745 (844)
+. | +..|. ..|-..+.. ..+.|..+.|...++.
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 98 2 23332 233333333 3466778887766654
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.02 E-value=4.2e+02 Score=22.95 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHH
Q 003150 635 DSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFH 676 (844)
Q Consensus 635 ~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 676 (844)
++.++|+.|...|+--... -|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555444433332 33333334444455555544443
No 470
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=26.56 E-value=7.9e+02 Score=26.04 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHH
Q 003150 590 SVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSM 623 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 623 (844)
..|...+..+|++++|..++.+.+ +.||.+|
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~---VETygsm 165 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ---VETYGSM 165 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhh
Confidence 347788889999999999988775 4455443
No 471
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.08 E-value=3.2e+02 Score=21.32 Aligned_cols=15 Identities=7% Similarity=0.377 Sum_probs=6.8
Q ss_pred HHHHHHHHcCCCCCc
Q 003150 335 DLFRKMILSGVKPDE 349 (844)
Q Consensus 335 ~~~~~m~~~g~~p~~ 349 (844)
++++.+.+.|..++.
T Consensus 40 ~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 40 EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHHTTTCTT-
T ss_pred HHHHHHHHhcccccc
Confidence 444444455555544
No 472
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.68 E-value=85 Score=24.05 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=28.1
Q ss_pred CCEEEEEEeCCCCCcChHHHHHHHHHHHHhcCcccC
Q 003150 797 NNITHLFVAADESHSESAQMLNILLPELEKEGYIPQ 832 (844)
Q Consensus 797 ~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 832 (844)
...+-.|-.+|...-...++|......+++.||-|-
T Consensus 4 ~D~T~~f~~~d~~~~~v~e~L~~VY~sL~ekGYNpi 39 (88)
T COG4472 4 TDETMRFDVGDSDKKDVKETLNDVYNSLEEKGYNPI 39 (88)
T ss_pred ccceeeeecCCChHHHHHHHHHHHHHHHHHcCCChH
Confidence 345667888885555667779999999999999884
No 473
>PRK14700 recombination factor protein RarA; Provisional
Probab=25.56 E-value=6.6e+02 Score=25.66 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHH---cCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 521 SMITRYSQ---NGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 521 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
-+|+++.+ ..+++.|+-.+-+|.+.|..|..+.-..++.|+-..|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34666654 57899999999999999999988888888877766663
No 474
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.91 E-value=3.4e+02 Score=29.68 Aligned_cols=58 Identities=12% Similarity=0.309 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
..|-....-|...++|++|.++..-. .+...|.+|......+.+...++.+|-.+.+.
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv---~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFV---QEQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhc---cchHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 33444445555566666666665543 23455666665555555655555555544443
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.67 E-value=3.2e+02 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003150 695 VDLFGRAGRLNKALETINSMPFAPDAGVWGT 725 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 725 (844)
+-.+.+.|.+++|.+++++.--.|+......
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 4455566666666666666532444433333
No 476
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.63 E-value=2.9e+02 Score=31.56 Aligned_cols=244 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCch----------HHH
Q 003150 199 DEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTD----------FGT 268 (844)
Q Consensus 199 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------~a~ 268 (844)
+-|....+..+......+..++.+.. .|++..+++....+ ..|..+-..+...+...|-++ ..+
T Consensus 284 ~~a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lr 357 (566)
T PF07575_consen 284 EYAQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLR 357 (566)
T ss_dssp HHHHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccccccccccccccHH
Q ss_pred HHHHHHHHhcCCCChhhhhHHHHHHhcCC--ChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 003150 269 QVHGVVVSVGLEFDPQVANSLLSMYSKSG--RLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVK 346 (844)
Q Consensus 269 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 346 (844)
+.+-.--...+-.+...|..-+..+..|+ .......++.+.+-.+...-.-++..|.+.|..+.|.++.+.+-..-.+
T Consensus 358 e~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~ 437 (566)
T PF07575_consen 358 EYLLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK 437 (566)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_pred CCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 003150 347 PDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYV 426 (844)
Q Consensus 347 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 426 (844)
..-|..-+.-+.+.|+...+..+-..+.+.....+......+++......-...-...+.+..+ ..-..
T Consensus 438 --~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre---------F~~~~ 506 (566)
T PF07575_consen 438 --EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE---------FYELY 506 (566)
T ss_dssp --HHHHHHHHHHHH------------------------------------------------------------------
T ss_pred --CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH---------HHHHH
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003150 427 LNGISHEALEKFRWLIQEKIIPNTVTLSSILPA 459 (844)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 459 (844)
+.|+..+|.+.+-.+...+..|..+-...+.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.27 E-value=1.7e+02 Score=18.33 Aligned_cols=24 Identities=4% Similarity=0.397 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003150 632 HLKDSLALFHEMLNNKIKPDHVTFLA 657 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~~t~~~ 657 (844)
.++.|..+|++.+. +.|+..+|..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 35667777777766 5566666543
No 478
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.56 E-value=1.3e+02 Score=28.94 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
...+|.+.+..++.+++++-|+....|..++...-++|+.+.|.+.+++..+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999999999999888776543
No 479
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.50 E-value=7.7e+02 Score=24.86 Aligned_cols=183 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh--hCCHHHHH
Q 003150 600 GNLDFARTVFDMMQR-KQEAAWNSMIAAYGCHG----HLKDSLALFHEMLNNKIKPDHVTFLAIISACGH--AGQVEAGI 672 (844)
Q Consensus 600 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~g~~~~a~ 672 (844)
+.+..|...+..... .+......+...|.... +..+|..+|..+.+.| .|........+..... ..+..+|.
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~a~~~lg~~~~~G~gv~~d~~~A~ 133 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAEALFNLGLMYANGRGVPLDLVKAL 133 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHHHHHhHHHHHhcCCCcccCHHHHH
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHHHhc-----CCHH--HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 003150 673 HYFHCMTEEYGIPARMEHYACMVDLFGRA-----GRLN--KALETINSMPFAPDAGVWGTLLGACRV----HGNVELAEV 741 (844)
Q Consensus 673 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~--~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~ 741 (844)
.+|+.+.+ .|..+.......+...|..- -..+ .|...+.++...-+......|...+.. ..|.++|..
T Consensus 134 ~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 134 KYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHH
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHhcC---------------CcchHHHHHHHHHHcCCcc
Q 003150 742 ASSHLFDLDPQNSGYYVLLSNIHADAG---------------QWGNVNKIRRLMKERGVQK 787 (844)
Q Consensus 742 ~~~~~~~~~p~~~~~~~~l~~~y~~~g---------------~~~~a~~~~~~m~~~~~~~ 787 (844)
.++++-+... ......++ ++...| ++..|...+...-..+...
T Consensus 213 wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 213 WYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.99 E-value=8.5e+02 Score=25.14 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 600 GNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
++.+....++..+.+.+...|-..+.. +..++-|..-++.+. -.+...+++--+..+...
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~--~~neeki~eld~~iedae 95 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMK--KANEEKIKELDEKIEDAE 95 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHH--HhhHHHHHHHHHHHHHHH
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhcCCC
Q 003150 680 EEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-------PFAPDAGVWGTLLGA-CRVHGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 680 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p 751 (844)
+..|-.--.+.+-...+-|++.|+.+.|++.+.+. +.+-|...+..-++. +..+.=+.+.+..++.+++..-
T Consensus 96 enlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 96 ENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Q ss_pred C
Q 003150 752 Q 752 (844)
Q Consensus 752 ~ 752 (844)
+
T Consensus 176 D 176 (393)
T KOG0687|consen 176 D 176 (393)
T ss_pred C
No 481
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.79 E-value=7.2e+02 Score=24.21 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 003150 599 CGNLDFARTVFDMMQR-KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHC 677 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 677 (844)
.+++++|.+.+-.-.- ++-. .-++.++..+|+.+.|+.+++...-..-.+ .....++.+ ...|.+.||..+-+.
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 3666777666643321 1111 136667777888888888887643321112 222222333 445788888887655
Q ss_pred hHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 003150 678 MTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAG 721 (844)
Q Consensus 678 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 721 (844)
..+. -....+..++..+.....-....+.+-.+|+.+...
T Consensus 166 ~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 166 YPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred Cchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 4331 113456666666654443344445555567666543
No 482
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.73 E-value=8.4e+02 Score=25.01 Aligned_cols=179 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhc--CCCChHHHHHHHHHHHhcC-----ChHHHHHHHHH---------HHHCCCCCC------HHHHHHH
Q 003150 601 NLDFARTVFDMM--QRKQEAAWNSMIAAYGCHG-----HLKDSLALFHE---------MLNNKIKPD------HVTFLAI 658 (844)
Q Consensus 601 ~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~---------m~~~g~~pd------~~t~~~l 658 (844)
.++.+.+++..+ .+++...|..++..+.... ..+.....|+. +.+.|..++ .......
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Q ss_pred HH--HHhhhCCHHHHHHHHHHhHhhcCC---CCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003150 659 IS--ACGHAGQVEAGIHYFHCMTEEYGI---PARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVH 733 (844)
Q Consensus 659 l~--a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 733 (844)
+- +|...+-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++......++.+..-.
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Q ss_pred CCHHHHHHHHHHhhcCC-CCCCchHHHHHHHH-HhcCCcchHHHHHHH
Q 003150 734 GNVELAEVASSHLFDLD-PQNSGYYVLLSNIH-ADAGQWGNVNKIRRL 779 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y-~~~g~~~~a~~~~~~ 779 (844)
.+.+.-.++++.++.-+ -.....+..+..++ ...---+-+.+.++.
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 483
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.67 E-value=7.4e+02 Score=24.32 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=88.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc
Q 003150 623 MIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACG-HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRA 701 (844)
Q Consensus 623 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 701 (844)
++..+-+.|++++....++++...+...+..--+.+-.+|- ..|....+++.+..+.....-..+. ....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~-~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNE-KQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchh-HHHHHHHHHHHH
Confidence 45556677777777777777777654444443333333332 2244445555555554432222221 122222222110
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCHHH-HHHHHHHHHh------cC-----CHHHHHHHHHHhhc-----CCCCCC
Q 003150 702 ------GRLNKALETINSM--PF--APDAGV-WGTLLGACRV------HG-----NVELAEVASSHLFD-----LDPQNS 754 (844)
Q Consensus 702 ------g~~~~A~~~~~~~--~~--~p~~~~-~~~ll~~~~~------~g-----~~~~a~~~~~~~~~-----~~p~~~ 754 (844)
.--.+.+++++.. |. .+...+ |.-+-+=|.+ .| -.+.|..+|+++++ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 0123444455443 21 122222 1111111111 12 23667777777764 577776
Q ss_pred chHHH---HHHHH-HhcCCcchHHHHHHHHHHcCCccCCCeeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHH
Q 003150 755 GYYVL---LSNIH-ADAGQWGNVNKIRRLMKERGVQKIPGYSWIELNNITHLFVAADESHSESAQMLNILLPELE 825 (844)
Q Consensus 755 ~~~~~---l~~~y-~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~ 825 (844)
...-+ .+-.| --.|+.++|.++-+..-+..+....+ ..+.+++++..|++.|..-+.
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~--------------l~e~~~~d~~~ilqlLrdNl~ 226 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT--------------LSEESYKDSTLILQLLRDNLT 226 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG--------------SHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc--------------cchhhhHHHHHHHHHHHHHHH
Confidence 54433 33333 44799999999877665554432221 124556666667666655543
No 484
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=22.64 E-value=1.4e+03 Score=27.63 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCC-------HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHH
Q 003150 720 AGVWGTLLGACRVHGN-------VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 720 ~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 775 (844)
+.-.++|++++...+. -+.=.-+.+.+++++|-||..-..|+..+..-.++++..+
T Consensus 773 pn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 773 PNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred CcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 3446788888753322 1223456788889999999999999999998888887666
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.55 E-value=2.7e+02 Score=25.66 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=24.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCH
Q 003150 626 AYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQV 668 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 668 (844)
.+...++.-.|.++++++.+.+..++..|....|..+...|.+
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3333344455666666666666555566555555555555544
No 486
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.18 E-value=4.7e+02 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=9.9
Q ss_pred HHHHHHHcCCchHHHHHHHHH
Q 003150 522 MITRYSQNGKPEEAIDLFRQM 542 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m 542 (844)
++.-|...++.++|.+-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 334444445555555444444
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.83 E-value=2.4e+02 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=6.8
Q ss_pred HHHHhcCCchHHHHHH
Q 003150 423 SGYVLNGISHEALEKF 438 (844)
Q Consensus 423 ~~~~~~g~~~~A~~~~ 438 (844)
.+|...|++.+|+.-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3444444444444443
No 488
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=21.32 E-value=9.3e+02 Score=24.99 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh------hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHH
Q 003150 633 LKDSLALFHEMLNNKIKPDHVTFLAIISACGH------AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 633 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 706 (844)
+++++.++++....+ .|........|.+|-. .-+|..-..+|+.+.. +.|++..--+=.-++++.--.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 567788888887776 4777777666665432 2256666666666644 45553322222223333334566
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 707 ALETINSMPFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 707 A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
++..++.+.-.|. ...|..-.+.+.+.|..++|...|++++++.++...--
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 6666666633322 23444555567888999999999999998887765443
No 489
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.28 E-value=1.1e+03 Score=28.37 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=70.8
Q ss_pred hccCCchHHHHHHHHHHHhcCCCChh--hhhHHHHHHhcCCChhHHHHHhccCCC---CCccchHHHHHHHHhCCChhHH
Q 003150 259 AVEAMTDFGTQVHGVVVSVGLEFDPQ--VANSLLSMYSKSGRLYDALKLFELMPQ---INLVTWNGMIAGHVQNGFMNEA 333 (844)
Q Consensus 259 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 333 (844)
+..|+.+ +.+.+++.|..+|.. ...+.+...+..|..+-+.-+++.-.. .|..-++.+..+ +..|+.+-+
T Consensus 533 a~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A-~~~g~~~iv 607 (823)
T PLN03192 533 ASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA-ISAKHHKIF 607 (823)
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH-HHhCCHHHH
Confidence 3455544 333344555554432 223445555666776666666554333 233334444333 344443322
Q ss_pred HHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchH--HHHHHHHHhhhCCCHHHHHHHHHhCC
Q 003150 334 LDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAF--LKSALIDIYFKCRDVKMACKVFKENT 411 (844)
Q Consensus 334 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~ 411 (844)
.-+ ...+-..+..+-...+...+..|+.+.++.+ ++.|..++.. -..+-+...+..|+.+-+.-+++...
T Consensus 608 ~~L----~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~L----l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 608 RIL----YHFASISDPHAAGDLLCTAAKRNDLTAMKEL----LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred HHH----HhcCcccCcccCchHHHHHHHhCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 222 2333333434444566667777777655444 4556554432 11233444567788888887777654
Q ss_pred CC
Q 003150 412 AA 413 (844)
Q Consensus 412 ~~ 413 (844)
..
T Consensus 680 dv 681 (823)
T PLN03192 680 DV 681 (823)
T ss_pred CC
Confidence 43
No 490
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.71 E-value=3.9e+02 Score=21.21 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=27.0
Q ss_pred hccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChh
Q 003150 193 TENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESD 230 (844)
Q Consensus 193 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 230 (844)
+...+.+.|.++++-++.++..+|.+...++-..|...
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34455777788888888888888888777777666443
No 491
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=20.66 E-value=9.6e+02 Score=28.95 Aligned_cols=146 Identities=11% Similarity=-0.005 Sum_probs=81.6
Q ss_pred HHhcCCChhHHHHHhccCCCCCc---cchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccc--cccchhhhhccccch
Q 003150 292 MYSKSGRLYDALKLFELMPQINL---VTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEIT--FSSFLPSICEVASIK 366 (844)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 366 (844)
..+..|+.+....+++.-..+|. .-.+.| ...+..|..+- .+.+.+.|..++... -.+-+...+..|+.+
T Consensus 531 ~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpL-h~Aa~~g~~~~----v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPL-HIAASKGYEDC----VLVLLKHACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcChHHH----HHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 34567888888888766544333 333444 44455666543 334455666665432 234455555667666
Q ss_pred hhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 003150 367 QGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAAD---VVMFTAMISGYVLNGISHEALEKFRWLIQ 443 (844)
Q Consensus 367 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (844)
-+.-++ +.+-..+.......+...+..|+.+-+..+++....+| ..-++.|..+ +..|+.+- .+.+.+
T Consensus 606 iv~~L~----~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A-~~~g~~~i----v~~Ll~ 676 (823)
T PLN03192 606 IFRILY----HFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA-MAEDHVDM----VRLLIM 676 (823)
T ss_pred HHHHHH----hcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCcHHH----HHHHHH
Confidence 555444 34433343444456777888999999999998755533 3334444433 45565443 334445
Q ss_pred cCCCCChh
Q 003150 444 EKIIPNTV 451 (844)
Q Consensus 444 ~g~~p~~~ 451 (844)
.|..++..
T Consensus 677 ~GAdv~~~ 684 (823)
T PLN03192 677 NGADVDKA 684 (823)
T ss_pred cCCCCCCC
Confidence 56555543
No 492
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=7.3e+02 Score=23.45 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
-+....-...|.|++++|.+-++.+.+
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356666667788888888887777644
No 493
>PRK14015 pepN aminopeptidase N; Provisional
Probab=20.54 E-value=1.6e+03 Score=27.34 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCC-------HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHH
Q 003150 720 AGVWGTLLGACRVHGN-------VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 720 ~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 775 (844)
+.-.++|++++...+. -..=.-+.+.+++++|-||..-..|...+..-.++++..+
T Consensus 783 pn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 783 PNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred CcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 3456788888754322 2223456788899999999999999999988888887665
No 494
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=9e+02 Score=24.51 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCCHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPAR-----MEHYACMVDLFGRAGRLNKAL----ETINSMPFAPDAGVWGTLLG 728 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~~~~~~~ll~ 728 (844)
..|...|++-.|--+-+.+.+++--+|+ ...|+.++..-.....+=+|- +++.......|...|...++
T Consensus 179 rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS 256 (439)
T COG5071 179 RLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLS 256 (439)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhh
Confidence 3466677777777777777666544554 234555555444444444555 44444445555566666555
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=20.23 E-value=1.6e+03 Score=27.37 Aligned_cols=254 Identities=9% Similarity=-0.068 Sum_probs=138.3
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC
Q 003150 405 KVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGK 484 (844)
Q Consensus 405 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 484 (844)
.+...+..+|...-..-+..+.+.+. .++...+.+.... +|...=...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 34444556666666666666666554 3344444444432 3333333444444433221111122222222 245
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhch
Q 003150 485 CHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANL 564 (844)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 564 (844)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....+....
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555566666544321 123445566667776666667777766554321 1221 235555556666666666
Q ss_pred hchHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH-HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 003150 565 HALHY-GKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFART-VFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHE 642 (844)
Q Consensus 565 ~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 642 (844)
+..+. +...+..+.+ .++..+-.+.+..+++.|..+.+.. +...+..+|...-...+.++...+. +++...+-.
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54432 2233333332 4567777888889999888765533 4444555676666667777777765 457777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 643 MLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 643 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
+.+ .|+...-...+.++...+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 765 56776666677777765334456666666654
No 496
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=1.5e+03 Score=26.96 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH-----H
Q 003150 386 LKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPA-----C 460 (844)
Q Consensus 386 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-----~ 460 (844)
++..-.+.|...+++..|.+++.++ ..++..+.--|....+.+ ++..|-.=+-..++|...+-..++.. +
T Consensus 391 Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~ 465 (911)
T KOG2034|consen 391 VLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELY 465 (911)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 3344456677777777777777765 333444444455555544 44444333333444544443332211 1
Q ss_pred -hcccchH----HHHHHHH--------HHHH-hCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHH
Q 003150 461 -ADLAALK----LGKELHC--------YILK-NGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRY 526 (844)
Q Consensus 461 -~~~~~~~----~a~~~~~--------~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 526 (844)
.+.++++ .+..-++ ++.+ .....+.....+........|+.+....+-.-| .-|..++.-+
T Consensus 466 L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~-----~d~~~vv~~~ 540 (911)
T KOG2034|consen 466 LEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLI-----KDYEFVVSYW 540 (911)
T ss_pred HHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHH-----HHHHHHHHHH
Confidence 1222222 1111111 1111 111112222333444455556665554443333 2355667777
Q ss_pred HHcCCchHHHHHHHHH
Q 003150 527 SQNGKPEEAIDLFRQM 542 (844)
Q Consensus 527 ~~~g~~~~A~~~~~~m 542 (844)
.+.+.+++|++++..-
T Consensus 541 ~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 541 IQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888876544
Done!