Query 003150
Match_columns 844
No_of_seqs 775 out of 4917
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 15:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-40 1E-44 380.2 37.0 496 192-766 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-40 1.4E-44 379.1 35.2 481 293-784 63-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 4.9E-24 1.7E-28 230.4 40.4 343 384-769 33-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 1.9E-26 6.6E-31 253.0 21.0 185 516-701 26-223 (501)
5 4g26_A Pentatricopeptide repea 99.9 1.3E-26 4.4E-31 254.4 17.4 184 113-296 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.9E-23 2.7E-27 220.9 40.1 348 424-782 8-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.7E-21 5.7E-26 215.2 30.1 342 383-789 25-412 (450)
8 2gw1_A Mitochondrial precursor 99.9 3.4E-21 1.2E-25 216.6 32.8 427 316-783 8-478 (514)
9 2gw1_A Mitochondrial precursor 99.9 3.3E-21 1.1E-25 216.7 31.2 448 283-763 6-492 (514)
10 1xi4_A Clathrin heavy chain; a 99.9 1.2E-16 4.1E-21 184.5 64.5 637 85-767 486-1327(1630)
11 3fp2_A TPR repeat-containing p 99.9 7.6E-20 2.6E-24 206.9 33.3 417 316-782 27-490 (537)
12 1xi4_A Clathrin heavy chain; a 99.9 1.4E-16 4.8E-21 183.9 59.2 642 80-775 606-1376(1630)
13 2y4t_A DNAJ homolog subfamily 99.8 7.4E-19 2.5E-23 193.8 33.0 357 347-754 24-415 (450)
14 3fp2_A TPR repeat-containing p 99.8 1.1E-18 3.9E-23 197.2 31.1 445 214-760 26-502 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 1.6E-16 5.4E-21 169.1 32.6 202 559-766 128-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.4E-16 4.9E-21 169.3 30.5 285 493-783 11-335 (359)
17 3hym_B Cell division cycle pro 99.8 2.2E-16 7.6E-21 165.8 30.8 286 482-771 19-322 (330)
18 1b89_A Protein (clathrin heavy 99.7 4.4E-16 1.5E-20 162.1 27.0 280 295-639 15-304 (449)
19 2ooe_A Cleavage stimulation fa 99.7 2.5E-14 8.5E-19 160.8 41.7 211 568-784 255-493 (530)
20 3hym_B Cell division cycle pro 99.7 9.8E-16 3.3E-20 160.8 27.8 262 514-781 20-297 (330)
21 2xm6_A Protein corresponding t 99.7 2.7E-14 9.4E-19 158.7 40.5 365 383-766 38-452 (490)
22 1fch_A Peroxisomal targeting s 99.7 3E-16 1E-20 167.7 23.0 278 495-778 35-354 (368)
23 1b89_A Protein (clathrin heavy 99.7 1.8E-16 6.2E-21 165.0 20.4 285 396-714 15-308 (449)
24 2ooe_A Cleavage stimulation fa 99.7 2.4E-14 8.2E-19 160.9 36.7 406 313-753 12-496 (530)
25 3mkr_A Coatomer subunit epsilo 99.7 7.8E-15 2.7E-19 150.1 26.7 267 494-774 8-285 (291)
26 4eqf_A PEX5-related protein; a 99.7 8.2E-16 2.8E-20 164.1 19.4 257 516-778 65-351 (365)
27 2xm6_A Protein corresponding t 99.7 3.3E-13 1.1E-17 150.0 40.5 352 412-784 36-433 (490)
28 4g1t_A Interferon-induced prot 99.7 2.2E-14 7.4E-19 159.0 29.6 361 382-794 49-470 (472)
29 1fch_A Peroxisomal targeting s 99.7 2.2E-15 7.6E-20 160.9 20.4 275 499-783 15-314 (368)
30 3mkr_A Coatomer subunit epsilo 99.7 6E-15 2.1E-19 150.9 21.8 246 523-783 6-264 (291)
31 4eqf_A PEX5-related protein; a 99.7 6.3E-15 2.2E-19 157.2 22.3 231 550-783 64-310 (365)
32 3cv0_A Peroxisome targeting si 99.6 5.5E-15 1.9E-19 154.8 21.0 254 520-779 25-311 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.6 2E-16 6.8E-21 177.2 9.0 150 179-328 124-286 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 4.8E-16 1.6E-20 174.2 9.5 127 583-710 124-258 (1134)
35 2pl2_A Hypothetical conserved 99.6 3.2E-14 1.1E-18 138.9 18.6 194 583-781 2-212 (217)
36 3cv0_A Peroxisome targeting si 99.6 3.1E-14 1E-18 149.1 19.2 257 491-753 27-319 (327)
37 3uq3_A Heat shock protein STI1 99.6 1.6E-13 5.6E-18 138.0 21.7 218 517-783 6-236 (258)
38 3uq3_A Heat shock protein STI1 99.5 1.8E-13 6.2E-18 137.7 19.5 236 486-763 6-256 (258)
39 4g1t_A Interferon-induced prot 99.5 4.9E-13 1.7E-17 148.1 24.5 235 497-761 225-471 (472)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.8E-13 1.6E-17 136.1 20.6 239 530-777 19-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 3.5E-13 1.2E-17 136.9 18.9 243 488-768 6-269 (272)
42 2ho1_A Type 4 fimbrial biogene 99.5 6.4E-12 2.2E-16 125.9 23.9 206 516-759 37-248 (252)
43 3e4b_A ALGK; tetratricopeptide 99.5 6.7E-12 2.3E-16 137.2 25.4 247 488-781 144-419 (452)
44 2ho1_A Type 4 fimbrial biogene 99.5 3E-12 1E-16 128.3 20.8 196 586-784 37-239 (252)
45 2vq2_A PILW, putative fimbrial 99.5 4.3E-12 1.5E-16 124.4 21.0 196 585-783 7-211 (225)
46 2vq2_A PILW, putative fimbrial 99.5 7.2E-12 2.5E-16 122.8 22.5 209 515-761 7-223 (225)
47 2q7f_A YRRB protein; TPR, prot 99.4 1.2E-12 4.1E-17 130.3 16.5 212 516-766 23-239 (243)
48 2h6f_A Protein farnesyltransfe 99.4 3.4E-12 1.2E-16 134.9 20.5 243 516-766 97-365 (382)
49 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-12 7.4E-17 128.4 16.8 197 584-784 21-223 (243)
50 1ouv_A Conserved hypothetical 99.4 6.4E-11 2.2E-15 120.2 26.9 223 515-784 5-252 (273)
51 3vtx_A MAMA; tetratricopeptide 99.4 1E-11 3.5E-16 117.5 18.7 164 616-783 4-170 (184)
52 3e4b_A ALGK; tetratricopeptide 99.4 2.5E-11 8.7E-16 132.5 24.0 343 421-785 9-389 (452)
53 1ouv_A Conserved hypothetical 99.4 5E-11 1.7E-15 120.9 24.6 225 484-754 5-256 (273)
54 4abn_A Tetratricopeptide repea 99.4 1.7E-12 5.8E-17 142.9 14.5 205 567-777 84-315 (474)
55 3sf4_A G-protein-signaling mod 99.4 1.7E-11 5.7E-16 132.5 20.6 285 487-771 11-364 (406)
56 4a1s_A PINS, partner of inscut 99.4 4.9E-12 1.7E-16 137.1 16.3 260 521-782 53-371 (411)
57 3u4t_A TPR repeat-containing p 99.4 5E-11 1.7E-15 120.8 22.6 239 452-729 5-264 (272)
58 2h6f_A Protein farnesyltransfe 99.4 7.7E-12 2.6E-16 132.2 16.7 222 552-780 98-344 (382)
59 3ro2_A PINS homolog, G-protein 99.4 1.9E-11 6.4E-16 128.1 19.5 259 523-783 12-332 (338)
60 2pl2_A Hypothetical conserved 99.4 3.8E-11 1.3E-15 116.9 20.0 109 600-713 98-210 (217)
61 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.9E-11 6.5E-16 124.1 18.0 216 562-783 16-244 (275)
62 3sf4_A G-protein-signaling mod 99.3 5.6E-12 1.9E-16 136.3 14.8 266 449-714 8-333 (406)
63 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-11 3.9E-16 141.5 17.3 161 617-782 9-173 (723)
64 4e6h_A MRNA 3'-END-processing 99.3 3.3E-09 1.1E-13 119.7 36.4 219 534-757 327-578 (679)
65 3vtx_A MAMA; tetratricopeptide 99.3 2.1E-11 7E-16 115.4 14.7 167 585-755 4-176 (184)
66 2ond_A Cleavage stimulation fa 99.3 5E-10 1.7E-14 115.7 25.0 186 568-756 81-277 (308)
67 4a1s_A PINS, partner of inscut 99.3 4.2E-11 1.4E-15 129.7 15.5 199 554-752 129-375 (411)
68 3ro2_A PINS homolog, G-protein 99.2 1.2E-10 4E-15 122.0 17.6 151 602-752 159-335 (338)
69 4e6h_A MRNA 3'-END-processing 99.2 3.9E-08 1.3E-12 110.9 38.6 434 330-785 48-572 (679)
70 2ond_A Cleavage stimulation fa 99.2 6E-10 2E-14 115.1 22.1 212 569-785 34-272 (308)
71 4i17_A Hypothetical protein; T 99.2 3.5E-10 1.2E-14 111.1 19.2 204 550-765 6-225 (228)
72 3ulq_A Response regulator aspa 99.2 1.5E-10 5E-15 124.1 17.3 222 560-782 112-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 1.7E-11 5.9E-16 126.9 9.3 237 515-782 26-306 (311)
74 3as5_A MAMA; tetratricopeptide 99.2 2.5E-10 8.6E-15 107.7 16.6 159 621-782 12-172 (186)
75 3ulq_A Response regulator aspa 99.2 3.4E-10 1.1E-14 121.3 19.4 230 522-751 109-370 (383)
76 3nf1_A KLC 1, kinesin light ch 99.2 1.1E-10 3.8E-15 120.8 14.2 238 485-752 27-310 (311)
77 3as5_A MAMA; tetratricopeptide 99.2 8.9E-10 3.1E-14 103.8 18.6 169 586-758 8-182 (186)
78 1hz4_A MALT regulatory protein 99.2 1E-08 3.5E-13 109.1 28.0 258 525-782 23-321 (373)
79 4abn_A Tetratricopeptide repea 99.1 2.7E-10 9.3E-15 125.2 15.1 178 601-783 83-287 (474)
80 4i17_A Hypothetical protein; T 99.1 8.5E-10 2.9E-14 108.3 16.0 186 586-783 7-209 (228)
81 3q15_A PSP28, response regulat 99.1 2.2E-09 7.7E-14 114.5 18.9 220 561-781 111-363 (378)
82 1qqe_A Vesicular transport pro 99.1 3.6E-09 1.2E-13 108.2 17.9 183 594-778 45-264 (292)
83 4gyw_A UDP-N-acetylglucosamine 99.1 6.4E-10 2.2E-14 127.1 13.4 164 584-752 7-177 (723)
84 3q15_A PSP28, response regulat 99.0 4.3E-08 1.5E-12 104.5 26.2 225 523-749 108-365 (378)
85 1qqe_A Vesicular transport pro 99.0 7.3E-09 2.5E-13 105.9 18.0 215 500-758 32-278 (292)
86 4ga2_A E3 SUMO-protein ligase 99.0 2.8E-10 9.4E-15 103.2 6.4 140 625-769 5-149 (150)
87 3edt_B KLC 2, kinesin light ch 99.0 1.8E-09 6.3E-14 109.6 13.4 197 586-782 43-280 (283)
88 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.2E-08 7.7E-13 97.8 18.3 180 587-786 5-216 (225)
89 3qky_A Outer membrane assembly 98.9 1.3E-08 4.4E-13 102.2 15.8 183 585-771 14-249 (261)
90 1hz4_A MALT regulatory protein 98.9 6E-07 2.1E-11 95.3 28.5 88 627-714 225-319 (373)
91 3edt_B KLC 2, kinesin light ch 98.9 4.6E-08 1.6E-12 99.1 18.7 207 516-750 43-282 (283)
92 2pzi_A Probable serine/threoni 98.9 4.8E-09 1.6E-13 120.7 12.2 144 618-767 434-581 (681)
93 3qky_A Outer membrane assembly 98.9 3.6E-08 1.2E-12 98.9 16.9 167 615-783 13-224 (261)
94 2fo7_A Synthetic consensus TPR 98.9 4.6E-08 1.6E-12 86.2 15.5 128 619-781 3-130 (136)
95 2fo7_A Synthetic consensus TPR 98.9 2.7E-08 9.2E-13 87.7 13.8 95 690-784 3-99 (136)
96 3qou_A Protein YBBN; thioredox 98.9 3.3E-08 1.1E-12 100.5 15.8 171 604-779 104-280 (287)
97 3mv2_B Coatomer subunit epsilo 98.9 2.1E-07 7E-12 93.0 20.6 41 494-534 22-63 (310)
98 3mv2_B Coatomer subunit epsilo 98.8 2.5E-07 8.5E-12 92.4 20.4 158 592-756 106-289 (310)
99 4ga2_A E3 SUMO-protein ligase 98.8 7.7E-09 2.6E-13 93.6 8.2 120 659-781 4-127 (150)
100 2r5s_A Uncharacterized protein 98.8 2.6E-08 9E-13 93.0 11.1 153 624-781 13-171 (176)
101 3urz_A Uncharacterized protein 98.8 6.1E-08 2.1E-12 93.3 13.8 153 595-753 13-190 (208)
102 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.6E-12 106.7 18.7 158 599-761 2-169 (568)
103 3gyz_A Chaperone protein IPGC; 98.8 2.4E-08 8.2E-13 89.8 9.6 102 682-783 29-133 (151)
104 3rjv_A Putative SEL1 repeat pr 98.8 3.6E-07 1.2E-11 88.1 18.5 172 605-785 5-199 (212)
105 4gco_A Protein STI-1; structur 98.8 4.2E-08 1.4E-12 85.5 10.6 113 648-763 8-124 (126)
106 2pzi_A Probable serine/threoni 98.7 1.6E-07 5.6E-12 107.9 18.1 191 562-758 402-611 (681)
107 2ifu_A Gamma-SNAP; membrane fu 98.7 3E-07 1E-11 94.6 18.0 219 529-775 4-253 (307)
108 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4E-12 107.2 15.6 150 630-784 2-158 (568)
109 2uy1_A Cleavage stimulation fa 98.7 1.8E-05 6.2E-10 86.6 31.4 202 534-748 197-412 (493)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.6E-07 1.6E-11 88.3 16.3 185 551-756 4-220 (225)
111 4gco_A Protein STI-1; structur 98.6 9.4E-08 3.2E-12 83.2 8.8 101 683-783 7-110 (126)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.3E-07 1.8E-11 87.0 15.0 129 618-752 7-153 (213)
113 2r5s_A Uncharacterized protein 98.6 3E-07 1E-11 85.7 12.6 154 589-748 9-172 (176)
114 2qfc_A PLCR protein; TPR, HTH, 98.6 9.4E-07 3.2E-11 90.2 17.4 162 619-780 77-263 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.9E-06 6.5E-11 83.0 18.7 150 589-751 9-174 (213)
116 2c2l_A CHIP, carboxy terminus 98.6 9.5E-08 3.3E-12 96.8 9.2 190 585-782 3-198 (281)
117 3u3w_A Transcriptional activat 98.6 5E-06 1.7E-10 84.7 22.2 160 622-781 80-264 (293)
118 3urz_A Uncharacterized protein 98.6 4.8E-07 1.6E-11 86.9 13.6 157 620-782 7-185 (208)
119 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-07 3.6E-12 85.7 8.3 99 684-782 16-117 (148)
120 3qou_A Protein YBBN; thioredox 98.6 5E-07 1.7E-11 91.7 13.7 160 583-747 114-282 (287)
121 1na0_A Designed protein CTPR3; 98.5 7.4E-07 2.5E-11 77.0 12.2 114 653-768 10-125 (125)
122 2vyi_A SGTA protein; chaperone 98.5 8.3E-07 2.8E-11 77.5 12.4 117 653-771 13-131 (131)
123 3dra_A Protein farnesyltransfe 98.5 8.9E-06 3.1E-10 82.1 21.4 185 593-782 74-286 (306)
124 2ifu_A Gamma-SNAP; membrane fu 98.5 3.2E-07 1.1E-11 94.4 10.6 197 563-781 3-222 (307)
125 2uy1_A Cleavage stimulation fa 98.5 9.9E-05 3.4E-09 80.7 31.0 201 433-644 197-411 (493)
126 1a17_A Serine/threonine protei 98.5 9.6E-07 3.3E-11 81.0 12.8 126 655-782 16-145 (166)
127 2lni_A Stress-induced-phosphop 98.5 8.3E-07 2.9E-11 77.8 11.8 113 654-769 18-133 (133)
128 2vgx_A Chaperone SYCD; alterna 98.5 2.2E-07 7.5E-12 83.6 7.6 117 640-761 10-130 (148)
129 1p5q_A FKBP52, FK506-binding p 98.5 5.4E-07 1.8E-11 93.8 11.3 142 617-780 147-291 (336)
130 2xcb_A PCRH, regulatory protei 98.5 6.4E-07 2.2E-11 80.0 10.0 95 688-782 18-114 (142)
131 3gyz_A Chaperone protein IPGC; 98.5 4.4E-07 1.5E-11 81.5 8.8 104 648-754 31-138 (151)
132 3u3w_A Transcriptional activat 98.4 2.7E-05 9.4E-10 79.2 22.1 158 592-749 81-266 (293)
133 3dra_A Protein farnesyltransfe 98.4 7.9E-05 2.7E-09 75.2 24.8 223 533-762 50-301 (306)
134 3rjv_A Putative SEL1 repeat pr 98.4 1.1E-05 3.8E-10 77.5 17.8 160 585-751 17-199 (212)
135 4f3v_A ESX-1 secretion system 98.4 5.8E-07 2E-11 88.5 8.5 181 598-783 18-237 (282)
136 2e2e_A Formate-dependent nitri 98.4 4.9E-07 1.7E-11 84.3 7.8 126 628-757 21-152 (177)
137 2kck_A TPR repeat; tetratricop 98.4 1.6E-06 5.5E-11 73.2 10.2 98 687-784 5-107 (112)
138 3upv_A Heat shock protein STI1 98.4 1.4E-06 4.7E-11 75.8 9.3 94 689-782 5-100 (126)
139 4f3v_A ESX-1 secretion system 98.4 3.3E-06 1.1E-10 83.1 12.8 139 620-763 105-250 (282)
140 2xcb_A PCRH, regulatory protei 98.3 6.4E-07 2.2E-11 80.0 7.1 113 648-763 13-129 (142)
141 2e2e_A Formate-dependent nitri 98.3 2.5E-06 8.5E-11 79.4 11.1 119 663-783 21-144 (177)
142 2qfc_A PLCR protein; TPR, HTH, 98.3 1.2E-05 4E-10 82.0 17.0 162 588-749 77-266 (293)
143 1elw_A TPR1-domain of HOP; HOP 98.3 6.1E-06 2.1E-10 70.2 12.6 109 654-764 6-116 (118)
144 1hxi_A PEX5, peroxisome target 98.3 1.3E-06 4.4E-11 75.3 8.1 94 689-782 18-113 (121)
145 3q49_B STIP1 homology and U bo 98.3 3.7E-06 1.3E-10 74.2 10.8 96 687-782 8-105 (137)
146 3gw4_A Uncharacterized protein 98.3 1.2E-05 4E-10 76.5 15.0 116 598-713 4-132 (203)
147 2fbn_A 70 kDa peptidylprolyl i 98.3 4.4E-06 1.5E-10 79.4 11.6 168 595-783 13-186 (198)
148 3gw4_A Uncharacterized protein 98.3 5.6E-06 1.9E-10 78.9 12.1 116 563-679 4-134 (203)
149 3upv_A Heat shock protein STI1 98.3 4.1E-06 1.4E-10 72.7 10.2 109 654-764 6-122 (126)
150 3sz7_A HSC70 cochaperone (SGT) 98.3 4.7E-06 1.6E-10 76.4 11.0 108 653-763 12-122 (164)
151 3sz7_A HSC70 cochaperone (SGT) 98.2 4.4E-06 1.5E-10 76.5 10.3 97 687-783 10-108 (164)
152 4gcn_A Protein STI-1; structur 98.2 2.7E-06 9.1E-11 74.1 8.0 93 690-782 10-111 (127)
153 2lni_A Stress-induced-phosphop 98.2 4.9E-06 1.7E-10 72.8 9.7 97 687-783 15-113 (133)
154 2dba_A Smooth muscle cell asso 98.2 1.4E-05 4.7E-10 71.5 12.8 77 689-765 66-144 (148)
155 1elw_A TPR1-domain of HOP; HOP 98.2 6E-06 2E-10 70.3 10.0 96 688-783 4-101 (118)
156 2dba_A Smooth muscle cell asso 98.2 9.1E-06 3.1E-10 72.6 11.1 97 687-783 27-128 (148)
157 1wao_1 Serine/threonine protei 98.2 1E-05 3.5E-10 88.4 13.6 197 626-833 15-241 (477)
158 1na0_A Designed protein CTPR3; 98.2 8E-06 2.7E-10 70.3 10.4 96 688-783 9-106 (125)
159 3q7a_A Farnesyltransferase alp 98.2 0.00012 4.2E-09 74.5 20.1 189 589-782 91-330 (349)
160 1a17_A Serine/threonine protei 98.2 2.1E-05 7.1E-10 71.9 13.2 127 618-748 14-145 (166)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.4E-05 4.9E-10 86.9 12.6 143 617-781 268-413 (457)
162 1wao_1 Serine/threonine protei 98.1 5.1E-06 1.7E-10 90.8 8.8 116 660-778 14-134 (477)
163 2vyi_A SGTA protein; chaperone 98.1 1.5E-05 5.2E-10 69.2 10.3 97 687-783 11-109 (131)
164 2hr2_A Hypothetical protein; a 98.1 6.7E-06 2.3E-10 72.8 7.8 72 690-761 59-143 (159)
165 2xev_A YBGF; tetratricopeptide 98.1 8E-06 2.7E-10 71.1 8.3 94 660-756 10-112 (129)
166 3q49_B STIP1 homology and U bo 98.1 1.5E-05 5E-10 70.2 9.9 100 651-752 8-109 (137)
167 1hxi_A PEX5, peroxisome target 98.1 1.2E-05 4E-10 69.2 8.8 97 655-754 20-119 (121)
168 2hr2_A Hypothetical protein; a 98.1 8.5E-06 2.9E-10 72.2 7.9 62 721-782 58-130 (159)
169 3dss_A Geranylgeranyl transfer 98.1 0.0007 2.4E-08 68.7 23.1 190 567-763 90-318 (331)
170 1elr_A TPR2A-domain of HOP; HO 98.0 1E-05 3.5E-10 70.3 8.3 105 658-765 10-123 (131)
171 1dce_A Protein (RAB geranylger 98.0 0.00011 3.8E-09 81.6 18.3 168 600-772 43-244 (567)
172 1p5q_A FKBP52, FK506-binding p 98.0 2.8E-05 9.7E-10 80.7 12.7 118 585-707 146-283 (336)
173 2kck_A TPR repeat; tetratricop 98.0 1.8E-05 6E-10 66.6 8.9 99 654-754 8-111 (112)
174 2c2l_A CHIP, carboxy terminus 98.0 2E-05 6.8E-10 79.5 10.6 107 651-760 3-112 (281)
175 3k9i_A BH0479 protein; putativ 98.0 3.5E-06 1.2E-10 72.0 4.1 91 665-756 3-97 (117)
176 2xev_A YBGF; tetratricopeptide 98.0 4.8E-05 1.6E-09 66.0 11.5 88 694-781 8-103 (129)
177 3rkv_A Putative peptidylprolyl 98.0 1.3E-05 4.3E-10 73.3 8.0 61 721-781 64-124 (162)
178 1ihg_A Cyclophilin 40; ppiase 98.0 2.2E-05 7.5E-10 82.5 10.9 137 617-775 223-362 (370)
179 2fbn_A 70 kDa peptidylprolyl i 98.0 7.2E-06 2.5E-10 77.9 6.5 144 559-708 12-176 (198)
180 4gcn_A Protein STI-1; structur 98.0 4.9E-05 1.7E-09 65.9 11.2 60 619-680 10-70 (127)
181 4b4t_Q 26S proteasome regulato 98.0 2.9E-05 9.9E-10 84.1 11.4 163 619-781 57-243 (434)
182 3rkv_A Putative peptidylprolyl 97.9 1.3E-05 4.4E-10 73.2 7.2 77 688-764 63-142 (162)
183 3k9i_A BH0479 protein; putativ 97.9 6.1E-06 2.1E-10 70.5 4.7 79 702-780 4-87 (117)
184 2if4_A ATFKBP42; FKBP-like, al 97.9 1.9E-05 6.6E-10 82.0 9.4 147 618-784 180-329 (338)
185 1elr_A TPR2A-domain of HOP; HO 97.9 1.9E-05 6.5E-10 68.6 8.0 96 688-783 4-108 (131)
186 3dss_A Geranylgeranyl transfer 97.9 0.00086 2.9E-08 68.0 20.6 176 602-783 90-304 (331)
187 3ro3_A PINS homolog, G-protein 97.9 4.1E-05 1.4E-09 69.4 10.0 135 619-782 11-157 (164)
188 3q7a_A Farnesyltransferase alp 97.9 0.002 6.9E-08 65.6 23.1 224 498-762 67-345 (349)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 2E-05 6.9E-10 81.9 8.4 112 654-782 181-292 (338)
190 3n71_A Histone lysine methyltr 97.9 2.3E-05 7.9E-10 84.9 8.8 98 689-786 352-467 (490)
191 3ro3_A PINS homolog, G-protein 97.9 4.8E-05 1.7E-09 68.9 9.8 95 586-680 9-117 (164)
192 2l6j_A TPR repeat-containing p 97.8 3E-05 1E-09 65.1 7.3 92 687-778 3-102 (111)
193 1na3_A Designed protein CTPR2; 97.7 9.7E-05 3.3E-09 59.3 8.4 81 688-768 9-91 (91)
194 4b4t_Q 26S proteasome regulato 97.7 0.00029 1E-08 76.1 14.6 158 625-782 12-203 (434)
195 3ma5_A Tetratricopeptide repea 97.7 9.5E-05 3.2E-09 60.8 8.1 64 719-782 6-69 (100)
196 1zu2_A Mitochondrial import re 97.7 6E-05 2.1E-09 66.6 6.6 72 705-783 63-147 (158)
197 2kat_A Uncharacterized protein 97.6 0.00014 4.7E-09 61.6 7.7 76 707-782 4-81 (115)
198 3bee_A Putative YFRE protein; 97.6 0.00018 6.3E-09 57.8 7.6 69 717-785 3-74 (93)
199 1zu2_A Mitochondrial import re 97.6 2.8E-05 9.6E-10 68.7 2.7 49 736-784 62-121 (158)
200 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00049 1.7E-08 74.7 12.6 125 585-714 267-412 (457)
201 1ihg_A Cyclophilin 40; ppiase 97.5 0.00019 6.6E-09 75.2 8.4 112 653-783 224-336 (370)
202 1dce_A Protein (RAB geranylger 97.4 0.0025 8.6E-08 70.8 16.0 147 630-781 42-219 (567)
203 2l6j_A TPR repeat-containing p 97.3 0.00045 1.5E-08 57.7 7.0 66 718-783 2-67 (111)
204 3lvg_A Clathrin heavy chain 1; 97.3 0.0011 3.7E-08 68.5 10.6 431 182-674 54-534 (624)
205 3n71_A Histone lysine methyltr 97.2 0.0011 3.9E-08 71.6 11.1 95 654-748 353-463 (490)
206 1klx_A Cysteine rich protein B 97.2 0.0013 4.3E-08 57.8 9.3 110 631-749 9-126 (138)
207 3qwp_A SET and MYND domain-con 97.2 0.00042 1.4E-08 73.9 6.5 62 721-782 330-399 (429)
208 3ly7_A Transcriptional activat 97.2 0.0071 2.4E-07 61.5 14.9 138 615-754 192-344 (372)
209 1klx_A Cysteine rich protein B 97.1 0.0027 9.1E-08 55.6 10.4 113 665-785 8-128 (138)
210 1na3_A Designed protein CTPR2; 97.1 0.0011 3.9E-08 52.7 6.8 64 720-783 9-72 (91)
211 2kat_A Uncharacterized protein 97.0 0.0016 5.4E-08 54.9 7.4 80 671-753 4-86 (115)
212 3qwp_A SET and MYND domain-con 96.9 0.0073 2.5E-07 64.3 13.1 72 690-761 331-417 (429)
213 3qww_A SET and MYND domain-con 96.9 0.004 1.4E-07 66.1 10.6 43 716-758 377-425 (433)
214 3lvg_A Clathrin heavy chain 1; 96.8 0.0078 2.7E-07 62.3 11.9 303 79-409 52-390 (624)
215 2kc7_A BFR218_protein; tetratr 96.8 0.0042 1.4E-07 50.4 8.3 64 694-757 6-72 (99)
216 3qww_A SET and MYND domain-con 96.8 0.0011 3.8E-08 70.5 5.7 62 721-782 341-410 (433)
217 3ma5_A Tetratricopeptide repea 96.6 0.0055 1.9E-07 49.9 7.7 63 616-680 6-69 (100)
218 3ly7_A Transcriptional activat 96.6 0.012 4.3E-07 59.7 11.5 132 648-783 190-339 (372)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0037 1.3E-07 50.8 6.2 59 726-784 6-65 (99)
220 3mkq_A Coatomer beta'-subunit; 96.3 0.088 3E-06 61.8 18.7 42 496-539 610-652 (814)
221 1wy6_A Hypothetical protein ST 96.3 0.25 8.5E-06 41.2 14.9 140 628-786 18-157 (172)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.13 4.4E-06 60.3 19.6 114 494-642 661-774 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.017 5.7E-07 47.4 8.4 72 690-761 7-87 (104)
224 1pc2_A Mitochondria fission pr 96.2 0.018 6.2E-07 50.1 8.4 75 686-760 30-111 (152)
225 1pc2_A Mitochondria fission pr 96.1 0.018 6E-07 50.2 8.2 92 717-831 29-125 (152)
226 3u64_A Protein TP_0956; tetrat 96.1 0.013 4.4E-07 57.0 8.0 86 705-790 180-276 (301)
227 3bee_A Putative YFRE protein; 96.1 0.026 8.9E-07 45.0 8.4 69 685-753 3-76 (93)
228 3mkq_B Coatomer subunit alpha; 95.9 0.26 9E-06 44.0 14.7 130 593-746 12-141 (177)
229 1qsa_A Protein (soluble lytic 95.4 3.8 0.00013 45.3 25.1 124 631-761 228-356 (618)
230 3u64_A Protein TP_0956; tetrat 94.3 0.11 3.9E-06 50.4 8.2 111 599-714 134-266 (301)
231 1nzn_A CGI-135 protein, fissio 94.3 0.39 1.3E-05 40.1 10.4 92 668-761 17-115 (126)
232 4h7y_A Dual specificity protei 92.8 0.13 4.3E-06 44.1 4.9 101 651-753 12-127 (161)
233 2v5f_A Prolyl 4-hydroxylase su 92.6 0.26 9E-06 40.0 6.7 64 719-782 4-74 (104)
234 3mkq_B Coatomer subunit alpha; 92.6 5.4 0.00018 35.5 17.7 127 562-715 16-142 (177)
235 4gns_B Protein CSD3, chitin bi 92.6 0.3 1E-05 55.0 9.1 54 727-780 344-397 (754)
236 1nzn_A CGI-135 protein, fissio 91.5 0.76 2.6E-05 38.4 8.0 66 717-782 32-102 (126)
237 4h7y_A Dual specificity protei 90.5 0.79 2.7E-05 39.3 7.2 102 614-718 10-125 (161)
238 1y8m_A FIS1; mitochondria, unk 89.4 4.3 0.00015 34.5 10.9 75 685-759 36-116 (144)
239 1y8m_A FIS1; mitochondria, unk 89.1 4.4 0.00015 34.4 10.7 69 649-720 36-110 (144)
240 4ady_A RPN2, 26S proteasome re 87.4 48 0.0016 38.3 32.1 255 394-655 384-664 (963)
241 3o48_A Mitochondria fission 1 86.9 3.7 0.00013 34.4 8.8 75 686-760 38-118 (134)
242 1wy6_A Hypothetical protein ST 86.7 11 0.00037 31.6 11.3 85 194-280 73-157 (172)
243 1zbp_A Hypothetical protein VP 85.9 3.6 0.00012 39.3 9.4 51 662-714 7-57 (273)
244 4ady_A RPN2, 26S proteasome re 85.8 57 0.002 37.7 34.3 26 316-341 232-257 (963)
245 4b4t_P 26S proteasome regulato 85.5 39 0.0013 35.6 22.3 96 619-714 139-244 (445)
246 1v54_E Cytochrome C oxidase po 85.4 6.3 0.00022 31.0 8.7 69 706-786 31-99 (109)
247 2p58_C Putative type III secre 84.7 5.8 0.0002 31.0 8.1 87 161-252 21-107 (116)
248 3lpz_A GET4 (YOR164C homolog); 84.6 34 0.0012 34.1 20.1 64 287-361 39-106 (336)
249 3txn_A 26S proteasome regulato 84.5 26 0.00088 36.1 15.9 162 552-713 20-206 (394)
250 3lpz_A GET4 (YOR164C homolog); 84.4 35 0.0012 34.0 21.9 166 489-680 39-215 (336)
251 2uwj_G Type III export protein 84.2 5.5 0.00019 31.1 7.8 87 161-252 20-106 (115)
252 1wdy_A 2-5A-dependent ribonucl 82.9 27 0.00094 33.6 15.5 57 291-348 153-213 (285)
253 4gns_B Protein CSD3, chitin bi 82.5 8.1 0.00028 43.6 12.0 51 626-678 346-397 (754)
254 3ffl_A Anaphase-promoting comp 82.4 6.5 0.00022 34.4 8.8 26 654-679 65-90 (167)
255 2wpv_A GET4, UPF0363 protein Y 82.4 40 0.0014 33.2 22.1 167 489-681 37-217 (312)
256 2p58_C Putative type III secre 82.3 15 0.00052 28.7 9.6 58 595-655 49-106 (116)
257 3ffl_A Anaphase-promoting comp 81.8 7.4 0.00025 34.1 8.9 123 646-780 12-148 (167)
258 4b4t_P 26S proteasome regulato 81.8 44 0.0015 35.1 17.1 93 656-748 141-246 (445)
259 2wpv_A GET4, UPF0363 protein Y 81.4 44 0.0015 33.0 20.5 164 588-782 35-216 (312)
260 1v54_E Cytochrome C oxidase po 80.6 7.9 0.00027 30.5 7.6 63 632-696 25-87 (109)
261 2uwj_G Type III export protein 80.6 15 0.0005 28.8 8.9 58 595-655 48-105 (115)
262 2ff4_A Probable regulatory pro 80.0 3 0.0001 43.4 7.1 67 723-789 174-245 (388)
263 3o48_A Mitochondria fission 1 79.8 4.5 0.00015 33.9 6.5 66 717-782 37-106 (134)
264 2ff4_A Probable regulatory pro 79.8 9.5 0.00032 39.5 10.9 70 620-691 174-248 (388)
265 2qx5_A Nucleoporin NIC96; mRNA 78.1 40 0.0014 37.3 15.5 84 522-616 300-386 (661)
266 3mv2_A Coatomer subunit alpha; 78.1 17 0.00059 35.7 11.1 42 711-752 196-239 (325)
267 2qx5_A Nucleoporin NIC96; mRNA 77.9 38 0.0013 37.5 15.3 45 214-260 154-198 (661)
268 2y69_E Cytochrome C oxidase su 77.5 15 0.00051 30.7 8.7 70 705-786 73-142 (152)
269 1wdy_A 2-5A-dependent ribonucl 77.2 53 0.0018 31.5 16.4 46 262-307 193-240 (285)
270 4fhn_B Nucleoporin NUP120; pro 76.1 49 0.0017 39.9 17.1 166 488-671 815-990 (1139)
271 1k1a_A B-cell lymphoma 3-encod 72.1 36 0.0012 31.7 12.2 84 120-207 14-101 (241)
272 1n11_A Ankyrin; clathrin, BAND 71.3 1E+02 0.0035 32.0 17.0 54 392-450 316-372 (437)
273 2y69_E Cytochrome C oxidase su 71.2 19 0.00065 30.0 7.9 62 633-696 69-130 (152)
274 3kea_A K1L; tropism, ANK repea 71.1 72 0.0024 30.9 14.4 48 289-336 132-180 (285)
275 1zbp_A Hypothetical protein VP 69.9 3.8 0.00013 39.2 4.1 59 696-754 5-65 (273)
276 1k1a_A B-cell lymphoma 3-encod 68.1 45 0.0016 31.0 11.9 25 223-247 16-40 (241)
277 4fhn_B Nucleoporin NUP120; pro 65.5 75 0.0026 38.3 15.4 61 722-782 901-966 (1139)
278 3jxi_A Vanilloid receptor-rela 62.9 26 0.00089 33.4 9.1 91 220-310 9-117 (260)
279 3ltm_A Alpha-REP4; protein eng 62.1 93 0.0032 28.2 19.6 151 505-667 22-172 (211)
280 3kea_A K1L; tropism, ANK repea 62.0 90 0.0031 30.2 13.0 13 396-408 138-150 (285)
281 3hra_A Ankyrin repeat family p 61.1 58 0.002 29.2 10.8 59 291-349 111-173 (201)
282 1n11_A Ankyrin; clathrin, BAND 60.7 1.6E+02 0.0054 30.5 17.8 17 393-409 218-234 (437)
283 3eiq_C Programmed cell death p 59.8 1.3E+02 0.0046 30.2 13.5 71 387-457 220-295 (358)
284 4b4t_R RPN7, 26S proteasome re 59.0 28 0.00094 36.6 8.9 59 655-714 134-194 (429)
285 4b4t_R RPN7, 26S proteasome re 57.5 55 0.0019 34.2 10.9 95 588-682 133-238 (429)
286 3esl_A Checkpoint serine/threo 56.7 67 0.0023 29.1 9.5 63 721-784 81-145 (202)
287 3eu9_A Huntingtin-interacting 56.7 90 0.0031 28.7 11.7 48 158-209 17-66 (240)
288 3mkr_B Coatomer subunit alpha; 54.7 27 0.00093 34.3 7.1 61 711-785 187-249 (320)
289 3jxi_A Vanilloid receptor-rela 54.0 42 0.0014 31.9 8.8 88 121-208 11-116 (260)
290 3ltj_A Alpharep-4; protein eng 52.8 1.3E+02 0.0044 26.9 20.3 61 614-679 118-178 (201)
291 3ljn_A Hypothetical protein; a 49.3 66 0.0023 32.5 9.9 15 395-409 252-266 (364)
292 3b7b_A Euchromatic histone-lys 48.9 91 0.0031 28.8 10.2 40 338-377 194-235 (237)
293 3eu9_A Huntingtin-interacting 47.7 1.2E+02 0.0041 27.8 10.9 20 87-106 45-64 (240)
294 3ltj_A Alpharep-4; protein eng 46.4 1.6E+02 0.0055 26.2 20.1 112 611-732 84-195 (201)
295 3bqo_A Telomeric repeat-bindin 45.1 1.1E+02 0.0037 27.5 8.6 67 704-770 94-167 (211)
296 2zu6_B Programmed cell death p 44.2 1.3E+02 0.0044 29.5 10.3 65 489-553 170-239 (307)
297 2zu6_B Programmed cell death p 42.1 2E+02 0.0068 28.2 11.3 204 387-592 6-243 (307)
298 3ltm_A Alpha-REP4; protein eng 41.9 1.9E+02 0.0066 25.9 20.0 142 495-645 43-184 (211)
299 2nsz_A Programmed cell death p 41.5 1.2E+02 0.0042 25.1 8.4 64 589-652 10-78 (129)
300 2d2s_A Exocyst complex compone 41.4 1.4E+02 0.0047 28.0 9.6 28 686-713 89-116 (235)
301 3eiq_C Programmed cell death p 40.8 2.9E+02 0.01 27.7 16.8 65 590-654 221-290 (358)
302 2rfa_A Transient receptor pote 40.7 2E+02 0.0069 26.2 11.2 20 325-344 162-181 (232)
303 3b7b_A Euchromatic histone-lys 40.0 2.2E+02 0.0075 26.0 11.9 17 191-207 83-99 (237)
304 4a1g_A Mitotic checkpoint seri 39.7 1.4E+02 0.0048 25.6 8.5 47 739-785 84-132 (152)
305 3aji_A 26S proteasome non-ATPa 39.6 1.7E+02 0.0059 26.6 10.5 19 189-207 10-28 (231)
306 3d9h_A CDNA FLJ77766, highly s 39.6 1.1E+02 0.0039 29.4 9.4 18 186-203 16-33 (285)
307 2ion_A PDCD4, programmed cell 38.4 1.9E+02 0.0065 24.8 9.8 65 489-553 13-82 (152)
308 2pnn_A Transient receptor pote 38.2 1.4E+02 0.0049 28.2 9.9 20 290-309 105-124 (273)
309 3hra_A Ankyrin repeat family p 36.6 2.2E+02 0.0076 25.1 10.7 17 91-107 12-28 (201)
310 2wvi_A Mitotic checkpoint seri 36.2 1.6E+02 0.0055 25.7 8.4 45 740-784 80-126 (164)
311 3ljn_A Hypothetical protein; a 34.5 1.5E+02 0.0053 29.6 9.9 16 495-510 251-266 (364)
312 2nsz_A Programmed cell death p 33.7 2E+02 0.007 23.8 11.1 65 489-553 11-80 (129)
313 4g8k_A 2-5A-dependent ribonucl 33.3 3.5E+02 0.012 26.4 16.7 105 470-586 219-329 (337)
314 4b4t_S RPN3, 26S proteasome re 33.0 3.5E+02 0.012 28.7 11.9 61 586-646 231-299 (523)
315 3utm_A Tankyrase-1; tankyrase, 32.9 3.6E+02 0.012 26.3 14.8 118 119-248 28-152 (351)
316 2d2s_A Exocyst complex compone 32.4 2E+02 0.0069 26.8 9.2 86 523-611 25-116 (235)
317 2etb_A Transient receptor pote 32.4 1.3E+02 0.0044 28.2 8.3 90 220-310 6-114 (256)
318 2ion_A PDCD4, programmed cell 32.3 1.2E+02 0.0041 26.1 7.0 64 589-652 12-80 (152)
319 4g8k_A 2-5A-dependent ribonucl 31.9 3.7E+02 0.013 26.2 18.0 58 85-147 26-87 (337)
320 1ug3_A EIF4GI, eukaryotic prot 31.3 3E+02 0.01 27.4 11.0 91 489-579 15-113 (339)
321 3aji_A 26S proteasome non-ATPa 31.2 2.2E+02 0.0074 25.9 9.6 22 324-349 179-200 (231)
322 4gq2_M Nucleoporin NUP120; bet 30.6 4E+02 0.014 31.1 13.4 34 722-755 899-933 (950)
323 1bd8_A P19INK4D CDK4/6 inhibit 30.2 1.3E+02 0.0044 25.3 7.3 14 295-308 110-123 (156)
324 3t8k_A Uncharacterized protein 29.2 3E+02 0.01 24.3 10.5 55 193-248 14-70 (186)
325 3t8k_A Uncharacterized protein 28.7 2.4E+02 0.0083 24.9 9.0 88 294-383 14-108 (186)
326 1bd8_A P19INK4D CDK4/6 inhibit 27.4 2E+02 0.007 24.0 8.1 15 224-238 10-24 (156)
327 3kae_A CDC27, possible protein 25.1 3.5E+02 0.012 23.7 15.2 80 597-678 44-140 (242)
328 3d9h_A CDNA FLJ77766, highly s 24.7 2.4E+02 0.0082 27.0 8.8 21 116-136 16-36 (285)
329 2r9g_A AAA ATPase, central reg 24.7 3.9E+02 0.013 24.1 9.7 61 522-583 17-85 (204)
330 2pnn_A Transient receptor pote 23.7 2.4E+02 0.0081 26.7 8.5 85 123-208 21-124 (273)
331 3i5p_A Nucleoporin NUP170; hel 23.3 2.5E+02 0.0084 30.0 8.8 67 717-783 175-246 (525)
332 2etb_A Transient receptor pote 22.7 1.1E+02 0.0038 28.7 5.8 55 254-308 5-68 (256)
333 3bge_A Predicted ATPase; struc 21.8 3.9E+02 0.013 24.0 8.3 45 522-566 10-57 (201)
334 1oyz_A Hypothetical protein YI 21.7 5.1E+02 0.017 24.4 22.6 18 514-531 140-157 (280)
335 4b4t_S RPN3, 26S proteasome re 21.6 2.2E+02 0.0075 30.2 7.9 62 653-714 232-296 (523)
336 3ctd_A Putative ATPase, AAA fa 20.5 4.8E+02 0.017 23.7 8.8 64 520-583 36-107 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-40 Score=380.22 Aligned_cols=496 Identities=10% Similarity=-0.015 Sum_probs=361.6
Q ss_pred hhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHH
Q 003150 192 YTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVH 271 (844)
Q Consensus 192 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 271 (844)
+.+.|....+...|+.++.++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45678888888999999888999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCCC-------------------CccchHHHHHHHHhCCChhH
Q 003150 272 GVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQI-------------------NLVTWNGMIAGHVQNGFMNE 332 (844)
Q Consensus 272 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 332 (844)
..+... ++++.+++.++.+|.++|++++|+++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678999999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCc-cccccchhhhhccccch--hhHHH-HHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHH
Q 003150 333 ALDLFRKMILSGVKPDE-ITFSSFLPSICEVASIK--QGKEI-HGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFK 408 (844)
Q Consensus 333 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 408 (844)
|+++|++|.+.+ |+. ..+..+...+...+..+ .+..+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999864 443 33333333333222222 12222 4444444555566677888889999999999999999
Q ss_pred hCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCcc
Q 003150 409 ENTA--ADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCH 486 (844)
Q Consensus 409 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 486 (844)
++.. ++..+|+.++.+|.+.|++++|+++|+++.+.+. .+..++..++
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~----------------------------- 346 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHL----------------------------- 346 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHH-----------------------------
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHH-----------------------------
Confidence 9877 7888999999999999999999999998887542 2344444444
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 003150 487 VGSAITDMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACAN 563 (844)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 563 (844)
..|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+..
T Consensus 347 ------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------- 403 (597)
T 2xpi_A 347 ------ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD----------------- 403 (597)
T ss_dssp ------HHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred ------HHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------
Confidence 445555555555555554432 245566666666666666666666666665421
Q ss_pred hhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 003150 564 LHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALF 640 (844)
Q Consensus 564 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 640 (844)
+.+..+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|
T Consensus 404 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 404 -------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12344555666666666666666666665542 36677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhc---CCCCC--chHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003150 641 HEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEY---GIPAR--MEHYACMVDLFGRAGRLNKALETINSM- 714 (844)
Q Consensus 641 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~- 714 (844)
+++.+.. ..+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8887742 3356788888888888888888888888886632 55676 678888999999999999999888887
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh
Q 003150 715 PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 766 (844)
Q Consensus 715 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 766 (844)
...| +..+|..+...|...|+.++|...++++++++|+++.++..|+++|..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 3344 678999999999999999999999999999999999999999988753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-40 Score=379.11 Aligned_cols=481 Identities=9% Similarity=-0.041 Sum_probs=399.6
Q ss_pred HhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHH
Q 003150 293 YSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIH 372 (844)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 372 (844)
+.+.|....+...++.++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++.+.|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677888888889988888999999999999999999999999999985 4578889999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCC-------------------ChhhHHHHHHHHHhcCCchH
Q 003150 373 GYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAA-------------------DVVMFTAMISGYVLNGISHE 433 (844)
Q Consensus 373 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 433 (844)
+.+... +++..+++.++.+|.++|++++|.++|+++.+. ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678999999999999999999999999965443 37899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChh-hHHHHHHHHhcccchHH--HHHH-HHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 003150 434 ALEKFRWLIQEKIIPNTV-TLSSILPACADLAALKL--GKEL-HCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFK 509 (844)
Q Consensus 434 A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (844)
|++.|++|.+.+ |+.. .+..+...+...+..+. ...+ +..+...+......+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999864 5443 33333333322222211 1111 3334444444445566777888999999999999999
Q ss_pred hcCC--CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchh
Q 003150 510 RMSE--KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNI 587 (844)
Q Consensus 510 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 587 (844)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 799999999999999999999999999999765 3367889999999999999999999999998654 56788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003150 588 AESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH 664 (844)
Q Consensus 588 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 664 (844)
+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 999999999999999999999998753 568899999999999999999999999999853 4467899999999999
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 003150 665 AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-------PFAPD--AGVWGTLLGACRVHGN 735 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 735 (844)
.|++++|.++|+.+.+. .+.++.+|..++.+|.+.|++++|.++++++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999873 3447889999999999999999999999988 45787 7899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
+++|+..++++++++|+++.+|..++++|...|+|++|.+.++++.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999887643
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.9e-24 Score=230.43 Aligned_cols=343 Identities=14% Similarity=0.186 Sum_probs=236.4
Q ss_pred hHHHHHHHHHhhhCCCHHHHHHHHHhC---CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 003150 384 AFLKSALIDIYFKCRDVKMACKVFKEN---TAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNT-VTLSSILPA 459 (844)
Q Consensus 384 ~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 459 (844)
...+..+...+...|++++|...++.. .+.+..+|..+...|.+.|++++|+..|+++... .|+. .++..+..+
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHH
Confidence 334444555555556666665555442 2234455666666666666666666666666553 2332 234444444
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHH
Q 003150 460 CADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAI 536 (844)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 536 (844)
+...|+++.|...+..+++.. +.+...+..+...|...|++++|.+.|+++.+ | +..+|+.+...|.+.|++++|+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444433322 11122233344445555555555555554432 2 3445555555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 003150 537 DLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR-- 614 (844)
Q Consensus 537 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 614 (844)
..|+++.+ .+ +.+...+..+...+...|++++|...|++...
T Consensus 190 ~~~~~al~-----------------------------------~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 190 HHFEKAVT-----------------------------------LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHH-----------------------------------HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHh-----------------------------------cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555544 32 22345666778888888899998888886653
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 003150 615 -KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA 692 (844)
Q Consensus 615 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 692 (844)
.+..+|..+...|...|++++|+..|+++.+ ..|+ ..++..+..++...|++++|++.|+.+.+. .+++...+.
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 309 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLN 309 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHH
Confidence 4678899999999999999999999999998 4565 468888999999999999999999999873 345788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 693 CMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
.++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++++|+++.+|..++.+|...|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999998 55565 68899999999999999999999999999999999999999999887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.9e-26 Score=252.99 Aligned_cols=185 Identities=12% Similarity=0.188 Sum_probs=173.3
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchh---------chHHHHHHHHHHHHhCCCCch
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLH---------ALHYGKEIHSLMIKDSCRSDN 586 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~~~ 586 (844)
...++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++++.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 34688899999999999999999999999999999999999999998654 478999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQR----KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISAC 662 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 662 (844)
.+|++||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999974 799999999999999999999999999999999999999999999999
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc
Q 003150 663 GHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRA 701 (844)
Q Consensus 663 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 701 (844)
++.|++++|.++|++|.+ .+..|+..+|+.+++.|.+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999988 59999999999999998764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.3e-26 Score=254.37 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=171.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC---------chHHHHHHHHHHHhCCCCCcc
Q 003150 113 LPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGN---------LRFGKLVHDMIWLMGCEIDVF 183 (844)
Q Consensus 113 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 183 (844)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34788999999999999999999999999999999999999999987664 577999999999999999999
Q ss_pred hHHHHHHHhhccCChHHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 003150 184 VGSSLVKLYTENRCIDEARYVFDKMS----QRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCA 259 (844)
Q Consensus 184 ~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 259 (844)
+||+||.+|++.|++++|.++|++|. .||.++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 47999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcC
Q 003150 260 VEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKS 296 (844)
Q Consensus 260 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 296 (844)
+.|+.++|.++++.|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=7.9e-23 Score=220.91 Aligned_cols=348 Identities=14% Similarity=0.112 Sum_probs=281.2
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHH
Q 003150 424 GYVLNGISHEALEKFRWLIQEKIIPNTV-TLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLD 502 (844)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 502 (844)
.+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+++.+...+...++.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 344556666666666555543 23332 33333344455566666666665555542 334556777778888888888
Q ss_pred HHHHHHHhcCC--C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhchhchHHHHHHHHHHH
Q 003150 503 LAYKIFKRMSE--K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDC-MSLSAALSACANLHALHYGKEIHSLMI 578 (844)
Q Consensus 503 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~ 578 (844)
+|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888887753 3 5567899999999999999999999998875 3554 445566677788899999999999988
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 003150 579 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVT 654 (844)
Q Consensus 579 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t 654 (844)
+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHH
Confidence 764 34577889999999999999999999998764 4577899999999999999999999999998 5676 468
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PF-APDAGVWGTLLGACR 731 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 731 (844)
+..+...+...|++++|++.|+.+.+ ..| ++..|..++.++.+.|++++|.+.++++ .. +++..+|..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 88899999999999999999999977 345 5788999999999999999999999998 33 345789999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
..|+++.|...++++++++|+++..+..++.+|...|++++|.+.++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998865
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.7e-21 Score=215.15 Aligned_cols=342 Identities=13% Similarity=0.107 Sum_probs=230.4
Q ss_pred chHHHHHHHHHhhhCCCHHHHHHHHHhCC---CCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003150 383 DAFLKSALIDIYFKCRDVKMACKVFKENT---AADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPA 459 (844)
Q Consensus 383 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 459 (844)
+...+..+...|.+.|++++|...|+++. +.+..+|..+...|...|++++|+..|+++.+.+ |+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD---------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC----------
Confidence 44455555555555555555555555422 2344455555555555555555555555544432 11
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch---HhHHHHHHHHHHcCCch
Q 003150 460 CADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEK---DV---VCWNSMITRYSQNGKPE 533 (844)
Q Consensus 460 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~ 533 (844)
+..++..+...|.+.|++++|.+.|+++.+. +. ..|..++..+...+
T Consensus 93 ------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 145 (450)
T 2y4t_A 93 ------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--- 145 (450)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred ------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH---
Confidence 1223344445566666666666666655432 22 44444433311111
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003150 534 EAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQ 613 (844)
Q Consensus 534 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 613 (844)
+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|+++.
T Consensus 146 --------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 146 --------------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp --------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred --------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111223445566666666666665543 3466778888999999999999999999876
Q ss_pred C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHH------------HHHHhhhCCHHHHHHHHHH
Q 003150 614 R---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVT-FLAI------------ISACGHAGQVEAGIHYFHC 677 (844)
Q Consensus 614 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~ 677 (844)
+ .+..+|..++..|...|++++|+..|+++.+ ..|+... +..+ ...|.+.|++++|..+|+.
T Consensus 205 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 205 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp HHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 5788999999999999999999999999997 5676654 3333 6789999999999999999
Q ss_pred hHhhcCCCCC-----chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 678 MTEEYGIPAR-----MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 678 ~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
+.+. .|+ ..+|..++.++.+.|++++|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++
T Consensus 283 ~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 283 VMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9873 454 458899999999999999999999997 4455 57999999999999999999999999999999
Q ss_pred CCCCchHHHHH------------HHHHhcC--CcchHHHHHHHHHHcCCccCC
Q 003150 751 PQNSGYYVLLS------------NIHADAG--QWGNVNKIRRLMKERGVQKIP 789 (844)
Q Consensus 751 p~~~~~~~~l~------------~~y~~~g--~~~~a~~~~~~m~~~~~~~~~ 789 (844)
|+++.++..++ +.|...| ++....++++.+++..++..|
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999 5577777 333334444444433333333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.4e-21 Score=216.62 Aligned_cols=427 Identities=11% Similarity=-0.023 Sum_probs=279.7
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 003150 316 TWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYF 395 (844)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 395 (844)
.|......+.+.|++++|+..|+++.... |+..++..+..++.+.|+++.|...++.+++.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 69 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---------------- 69 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----------------
Confidence 44555666677777777777777776643 444444444444444444444444444444432
Q ss_pred hCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHH
Q 003150 396 KCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCY 475 (844)
Q Consensus 396 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 475 (844)
+.+..+|..+..+|.+.|++++|+..|+++...+. ++.......+..+........+.+.+..
T Consensus 70 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 70 ----------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp ----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555556666666666666666666655432 2333333333333222222222222211
Q ss_pred HHHhCCCCCccchHH---HHHHHHhcCCHHHHHHHHHhcC---------CC-ChHhHHHHHHHHHH---cCCchHHHHHH
Q 003150 476 ILKNGLDGKCHVGSA---ITDMYAKCGRLDLAYKIFKRMS---------EK-DVVCWNSMITRYSQ---NGKPEEAIDLF 539 (844)
Q Consensus 476 ~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~ 539 (844)
+...+..++....+. .............+...+.... .| +...+......+.. .|++++|+..|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 111111110000000 0000001111111111121111 11 24444444444444 78899999999
Q ss_pred HHHHH-----CCCCC--------ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003150 540 RQMAI-----EGVKH--------DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFAR 606 (844)
Q Consensus 540 ~~m~~-----~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 606 (844)
+++.. ....| +..++..+...+...|+++.|..+++.+.+.... ...+..+...|...|++++|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGG
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHH
Confidence 99887 32122 2456667777888899999999999998887644 778888999999999999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhc
Q 003150 607 TVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEY 682 (844)
Q Consensus 607 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 682 (844)
+.|+.+.. .+...|..+...|...|++++|+..|++..+. .|+ ..++..+...+...|++++|..+++.+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 367 (514)
T 2gw1_A 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK- 367 (514)
T ss_dssp GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence 99988764 46778999999999999999999999999984 444 467888888999999999999999998773
Q ss_pred CCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhcCCC
Q 003150 683 GIPARMEHYACMVDLFGRAGRLNKALETINSM----PFAPD----AGVWGTLLGACRV---HGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 683 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p 751 (844)
.+.++..+..++..+.+.|++++|.+.++++ +..|+ ..+|..+...+.. .|+++.|...++++++++|
T Consensus 368 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 368 -FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp -STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred -cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 2336788899999999999999999999887 32333 3488889999999 9999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 752 QNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 752 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+++..+..++.+|...|++++|.+.+++..+.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.3e-21 Score=216.74 Aligned_cols=448 Identities=9% Similarity=-0.016 Sum_probs=309.5
Q ss_pred hhhhhHHHHHHhcCCChhHHHHHhccCCC--CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhh
Q 003150 283 PQVANSLLSMYSKSGRLYDALKLFELMPQ--INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSIC 360 (844)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 360 (844)
...+..+...|.+.|++++|...|+++.+ ||...|..+..++.+.|++++|+..|+++.+.+. .+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 35567788889999999999999998864 7888999999999999999999999999988642 23456777777777
Q ss_pred ccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCC----CChhhHHHHHHHHHhcCCchHHHH
Q 003150 361 EVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTA----ADVVMFTAMISGYVLNGISHEALE 436 (844)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 436 (844)
..|++++|...++.+.+.+. ++......++..+.+......+.+.+..+.. ++...++.-......
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------- 154 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK--------- 154 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh---------
Confidence 88888888888887777653 3333333333333332222222222211111 111111100000000
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHH---hcCCHHHHHHHHHhcCC
Q 003150 437 KFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYA---KCGRLDLAYKIFKRMSE 513 (844)
Q Consensus 437 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~ 513 (844)
....|+.......+..+........ ..-+.+...+..+...+. +.|++++|...|+++.+
T Consensus 155 -------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 155 -------QENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred -------ccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 0111222222111111100000000 000001112222222233 26777777777776543
Q ss_pred ----------------C-ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHH
Q 003150 514 ----------------K-DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSL 576 (844)
Q Consensus 514 ----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 576 (844)
+ +..+|..+...+...|++++|+..|+++.... |+...+..+..++...|+++.|...++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 35667788888899999999999999888765 3477778888888889999999999988
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 003150 577 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DH 652 (844)
Q Consensus 577 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~ 652 (844)
+.+.. +.+...+..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..|+++.+. .| +.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 372 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAP 372 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCS
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCH
Confidence 88764 34566788899999999999999999997653 46788999999999999999999999999884 44 45
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGR---AGRLNKALETINSM-PFAP-DAGVW 723 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~ 723 (844)
.++..+...+...|++++|..+++.+.+...-.|+ ...+..++.++.+ .|++++|.+.++++ ...| +..+|
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 68888888999999999999999998764322232 3489999999999 99999999999987 3344 46888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
..+...+...|+.+.|...++++++++|+++..+..+...
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999999999999999998887776433
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=1.2e-16 Score=184.47 Aligned_cols=637 Identities=12% Similarity=0.094 Sum_probs=362.0
Q ss_pred hHHHHHHHhcCChhhHhhhccCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCch
Q 003150 85 AKILGMYVLCGGFIDAGNMFPRLDLATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACSALGNLR 164 (844)
Q Consensus 85 ~~l~~~~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 164 (844)
+..+..+++.|.++.+...-.+..- ..-|..|++.+.+. +++.|.++-..+.+.. |....++.+...+...+.+.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~~--~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVGY--TPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccCC--CccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHH
Confidence 4556666666666666555443321 23377888888765 5788888777776653 24556777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHH-----------------------------HHHhhccCChHHHHHHHhcCCC--C--
Q 003150 165 FGKLVHDMIWLMGCEIDVFVGSSL-----------------------------VKLYTENRCIDEARYVFDKMSQ--R-- 211 (844)
Q Consensus 165 ~a~~~~~~~~~~g~~~~~~~~~~l-----------------------------i~~y~~~g~~~~A~~~f~~~~~--~-- 211 (844)
++..++-...+.+-+.+..+.+.| ...|-+.|-++.|.+.+..+.. +
T Consensus 561 ~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~ 640 (1630)
T 1xi4_A 561 QCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAV 640 (1630)
T ss_pred HHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHh
Confidence 888877777766544333443333 3344455555555555544321 1
Q ss_pred ---CcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHh-----------
Q 003150 212 ---DCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSV----------- 277 (844)
Q Consensus 212 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----------- 277 (844)
....-.-|+. |...=..+.+++.+++|...+++-|......+-.-|...=-.+....+|+.....
T Consensus 641 ~~~~~~~~~~l~~-~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv 719 (1630)
T 1xi4_A 641 VHTHLLNPEWLVN-YFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV 719 (1630)
T ss_pred hccCcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc
Confidence 1111111222 2222344555666666655444444333222222222222223333333333211
Q ss_pred cCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC---------------CCcc---------c-h------------HHH
Q 003150 278 GLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ---------------INLV---------T-W------------NGM 320 (844)
Q Consensus 278 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~---------~-~------------~~l 320 (844)
.+..|+.+....|.++++.|++.+.+++.++-.- +|.. . . ...
T Consensus 720 ~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ 799 (1630)
T 1xi4_A 720 NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 799 (1630)
T ss_pred cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhH
Confidence 2345888999999999999999998888765321 1211 0 1 122
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCC-----------CCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHH
Q 003150 321 IAGHVQNGFMNEALDLFRKMILSGVK-----------PDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSA 389 (844)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 389 (844)
|..|++.-++..+-.+.-.+.+.+.. .+......|+..+-+.+++......++.-+..| ..++.++|+
T Consensus 800 ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hna 878 (1630)
T 1xi4_A 800 IEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNA 878 (1630)
T ss_pred HHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 33333332222222222222111100 111112223333334444444444555555555 457788888
Q ss_pred HHHHhhhCCCHHHH-------------------------HHHHHh------------------------CCCCChhhH--
Q 003150 390 LIDIYFKCRDVKMA-------------------------CKVFKE------------------------NTAADVVMF-- 418 (844)
Q Consensus 390 li~~~~~~g~~~~A-------------------------~~~~~~------------------------~~~~~~~~~-- 418 (844)
|...|...++-.+. .-.+++ ....|...|
T Consensus 879 lakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~ 958 (1630)
T 1xi4_A 879 LAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGS 958 (1630)
T ss_pred HHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHH
Confidence 88887755432222 111111 001122222
Q ss_pred ------------------------------HHHHHHHHhcCCchHHHHHHHHHHHcCC--CCChhhHHHHHHHHhcccch
Q 003150 419 ------------------------------TAMISGYVLNGISHEALEKFRWLIQEKI--IPNTVTLSSILPACADLAAL 466 (844)
Q Consensus 419 ------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~ 466 (844)
...+.+|...|.+.+|++++++....+- .-+...-+.++.+..+. +.
T Consensus 959 vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A 959 VLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred HhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Ch
Confidence 3355678888999999999999884421 01122233333333222 33
Q ss_pred HHHHHHHHHHHHhCCCCCccchHHHHHHHH---------------------------hcCCHHHHHHHHHhcCCCChHhH
Q 003150 467 KLGKELHCYILKNGLDGKCHVGSAITDMYA---------------------------KCGRLDLAYKIFKRMSEKDVVCW 519 (844)
Q Consensus 467 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------------------------~~g~~~~A~~~~~~m~~~~~~~~ 519 (844)
.++.++.....+. ....+...+. ..+++++|.++.++. .+..+|
T Consensus 1038 ~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vW 1108 (1630)
T 1xi4_A 1038 TRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVW 1108 (1630)
T ss_pred hhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHH
Confidence 3333332222100 0111223333 444455555554444 235667
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003150 520 NSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKC 599 (844)
Q Consensus 520 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 599 (844)
..+..++.+.|++++|++.|.+. -|...|..+..+|.+.|+++++.+++....+.. +++...+.++..|++.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 77777777788888887777543 456667777777788888888888777766654 3333334577777777
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 600 GNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.
T Consensus 1181 ~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 7777544442 3455666777777777788888888877774 36777777777778888887777665
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 680 EEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 680 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
.+..+|..+..++...|++..|....... .-++..+..++..|...|.+++|+..+++++.++|.+.+.+.-
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 23366777777777777777777766543 3444555677888888999999999999999999999999988
Q ss_pred HHHHHHhc
Q 003150 760 LSNIHADA 767 (844)
Q Consensus 760 l~~~y~~~ 767 (844)
|+.+|++.
T Consensus 1320 LaiLyaKy 1327 (1630)
T 1xi4_A 1320 LAILYSKF 1327 (1630)
T ss_pred HHHHHHhC
Confidence 88888764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=7.6e-20 Score=206.87 Aligned_cols=417 Identities=10% Similarity=0.048 Sum_probs=202.2
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 003150 316 TWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYF 395 (844)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 395 (844)
.|..+...+.+.|++++|+..|+++.... +.+..++..+...+.+.|+++.|.+.++.+++.. +.+...+..+..+|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 45555666666777777777776666542 1133444444445555555555555555555443 334555566666666
Q ss_pred hCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHc------CCCCChhhHHHHHHHHhcccchHHH
Q 003150 396 KCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQE------KIIPNTVTLSSILPACADLAALKLG 469 (844)
Q Consensus 396 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a 469 (844)
..|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----------------- 166 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----------------- 166 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH-----------------
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH-----------------
Confidence 666666666666432 212222222233444444455566666665432 12222222
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChH---hHHHHHHHHHH--------cCCchHHHHH
Q 003150 470 KELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVV---CWNSMITRYSQ--------NGKPEEAIDL 538 (844)
Q Consensus 470 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~~ 538 (844)
+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+
T Consensus 167 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 167 ----------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp ----------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22333333443333333333222111 11111111111 1244555555
Q ss_pred HHHHHHCCCCCC--------hHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 003150 539 FRQMAIEGVKHD--------CMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFD 610 (844)
Q Consensus 539 ~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 610 (844)
|+++.+.. |+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...|...|++++|.+.|+
T Consensus 225 ~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55554322 22 1123333334444555555555555555442 224445555555555566666655555
Q ss_pred hcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC
Q 003150 611 MMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA 686 (844)
Q Consensus 611 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 686 (844)
.+.+ .+..+|..+...|...|++++|+..|++..+ ..|+ ..++..+...+...|++++|..+|+.+.+. .+.
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 376 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT 376 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 4432 2445555566666666666666666666655 2333 245555555566666666666666665542 122
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHhhc
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM----PFAPD----AGVWGTLLGACRVH----------GNVELAEVASSHLFD 748 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~ 748 (844)
++..+..++.++.+.|++++|.+.++++ |..++ ...+..+...+... |+++.|...++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 3455555666666666666666665554 11111 12233333444444 666666666666666
Q ss_pred CCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 749 LDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 749 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666666666666655543
No 12
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.4e-16 Score=183.86 Aligned_cols=642 Identities=12% Similarity=0.067 Sum_probs=423.4
Q ss_pred ChhhHhHHHHHHHhcCChhhHhhhccCCCC-------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 003150 80 NAALGAKILGMYVLCGGFIDAGNMFPRLDL-------ATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPS 152 (844)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 152 (844)
+.+-...+.+.|-+.|-+..|.+.+..+.. .....=.-|+ .|...=..+.+++.++.|...+++-+-...-.
T Consensus 606 thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvq 684 (1630)
T 1xi4_A 606 THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQ 684 (1630)
T ss_pred ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhh
Confidence 334456677778888888888888876621 1111112233 33444567888888888887554443322222
Q ss_pred HHHHHhccCCchHHHHHHHHHHH-----------hCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCC-----------
Q 003150 153 VMKACSALGNLRFGKLVHDMIWL-----------MGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQ----------- 210 (844)
Q Consensus 153 ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----------- 210 (844)
+..-+...=....-.++|+.... -++..|+.+....|.+.++.|++.+.+++.++-.-
T Consensus 685 va~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk 764 (1630)
T 1xi4_A 685 VASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 764 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHh
Confidence 22222211112222222222111 13466888999999999999999988888765321
Q ss_pred ----CCc----------------c------hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHH---------
Q 003150 211 ----RDC----------------V------LWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACIL--------- 255 (844)
Q Consensus 211 ----~~~----------------~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------- 255 (844)
+|. + .....|..|++.-++..+-.+...+.+.+. +......+|
T Consensus 765 ~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~ 842 (1630)
T 1xi4_A 765 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFST 842 (1630)
T ss_pred hCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCH
Confidence 111 1 112335555555454444444444433222 222222233
Q ss_pred ----HHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccC------------CCCCcc----
Q 003150 256 ----SVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELM------------PQINLV---- 315 (844)
Q Consensus 256 ----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~---- 315 (844)
..+-+.+++......++.-+..| ..++.++|+|...|...++-.+ +++.+- .++|+.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~i 919 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHH
Confidence 33333334444444455555555 4588899999999987654222 221111 112221
Q ss_pred ------chHHHHHHHHhCCChhHHH------------------------HHHHHHHHc----CCCCCccccccchhhhhc
Q 003150 316 ------TWNGMIAGHVQNGFMNEAL------------------------DLFRKMILS----GVKPDEITFSSFLPSICE 361 (844)
Q Consensus 316 ------~~~~li~~~~~~g~~~~A~------------------------~~~~~m~~~----g~~p~~~t~~~ll~~~~~ 361 (844)
.-.-||...-+++.+..-- ++.++-... ...|+. .....+++..
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pee--Vs~~vKaf~~ 997 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEE--VSVTVKAFMT 997 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHH--hHHHHHHHHh
Confidence 1122333333333322111 111111111 122333 3556778888
Q ss_pred cccchhhHHHHHHHHHhC--CCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 003150 362 VASIKQGKEIHGYIIRNG--VPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFR 439 (844)
Q Consensus 362 ~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 439 (844)
.|...++.++++.++-.+ +..+....+.|+.+..+. +..+......+....+ ...+...+...|.+++|..+|+
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999888442 224456677777777776 5566666666655333 4457778889999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhH
Q 003150 440 WLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCW 519 (844)
Q Consensus 440 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 519 (844)
+.. -.....+.++. ..+++++|.++...+ .+..+|..+..++.+.|++++|.+.|.+. .|...|
T Consensus 1074 Ka~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say 1137 (1630)
T 1xi4_A 1074 KFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSY 1137 (1630)
T ss_pred HcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHH
Confidence 852 11122233332 667888888887754 44678889999999999999999999775 677888
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003150 520 NSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKC 599 (844)
Q Consensus 520 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 599 (844)
..++..+.+.|++++|++.+...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...
T Consensus 1138 ~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1138 MEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhc
Confidence 999999999999999999999877754 33333445888999998888644443 1 34556677799999999
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 600 GNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|.+..|......
T Consensus 1209 g~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-- 1275 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-- 1275 (1630)
T ss_pred CCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--
Confidence 9999999999986 48999999999999999999999976 3558899999999999999999887543
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc--CCHHHHHHHHHHhhcCCC----
Q 003150 680 EEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA-GVWGTLLGACRVH--GNVELAEVASSHLFDLDP---- 751 (844)
Q Consensus 680 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p---- 751 (844)
+..+++.+..++..|.+.|.+++|+.+++.. +..|.. ..|.-|...+.+. ++..++.+.+..-+.+.|
T Consensus 1276 ----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~ 1351 (1630)
T 1xi4_A 1276 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 1351 (1630)
T ss_pred ----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHH
Confidence 4446778889999999999999999999877 666554 5676666666554 577788888888888887
Q ss_pred -CCCchHHHHHHHHHhcCCcchHHH
Q 003150 752 -QNSGYYVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 752 -~~~~~~~~l~~~y~~~g~~~~a~~ 775 (844)
++...|.-+.-+|.+.|+|+.|..
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHH
Confidence 788889999999999999999984
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=7.4e-19 Score=193.83 Aligned_cols=357 Identities=9% Similarity=0.037 Sum_probs=239.1
Q ss_pred CCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCC---CCChhhHHHHHH
Q 003150 347 PDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENT---AADVVMFTAMIS 423 (844)
Q Consensus 347 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 423 (844)
.+...+..+...+.+.|+++.|..+++.+++.. +.+..++..+..+|...|++++|...|+++. +.+...|..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 345677888889999999999999999999874 5578899999999999999999999998854 356789999999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcC
Q 003150 424 GYVLNGISHEALEKFRWLIQEKIIPNT----VTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCG 499 (844)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 499 (844)
.|.+.|++++|...|+++... .|+. ..+..+...+...+. ..+...|.+.|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~-----------------------~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRL-----------------------RSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHcC
Confidence 999999999999999999875 4554 344444433221111 22335577788
Q ss_pred CHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHH
Q 003150 500 RLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSL 576 (844)
Q Consensus 500 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 576 (844)
++++|...|+++.+ .+...+..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888887653 367778888888888888888888888887642 22345555555555555555555555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----
Q 003150 577 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH---- 652 (844)
Q Consensus 577 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---- 652 (844)
+.+.... +...+..+... + ....+..+...|...|++++|+..|+++.+ +.|+.
T Consensus 237 ~~~~~p~-~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~ 294 (450)
T 2y4t_A 237 CLKLDQD-HKRCFAHYKQV----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYT 294 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHH----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHH
T ss_pred HHHhCCC-hHHHHHHHHHH----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHH
Confidence 5543211 11111111000 0 001112236667777777777777777776 44552
Q ss_pred -HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 003150 653 -VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGA 729 (844)
Q Consensus 653 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 729 (844)
..+..+...+.+.|++++|+..++.+.+. .+.+...|..++.+|...|++++|.+.++++ ...|+ ..+|..+..+
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 35566666777777777777777776552 2225667777777777777777777777776 55555 3455444422
Q ss_pred ------------HHhcC-----CHHHHHHHHHH-hhcCCCCCC
Q 003150 730 ------------CRVHG-----NVELAEVASSH-LFDLDPQNS 754 (844)
Q Consensus 730 ------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~ 754 (844)
+...| +.+++.+.+++ +++.+|++.
T Consensus 373 ~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 22223 55667777776 778888764
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.1e-18 Score=197.17 Aligned_cols=445 Identities=10% Similarity=0.017 Sum_probs=262.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCCCChhhhhHHHHHH
Q 003150 214 VLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLEFDPQVANSLLSMY 293 (844)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 293 (844)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|+++.|...+..+++.. +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666667777777777777777776643 2344555555555566666666666666655543 22445555566666
Q ss_pred hcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHH
Q 003150 294 SKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHG 373 (844)
Q Consensus 294 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 373 (844)
...|++++|...|+.+. .+....+..+..+...+...+|+..++++.... |+..
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~----------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG----------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc-----------------------
Confidence 66666666666664322 122222222333444444455555555553321 0000
Q ss_pred HHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChh---hHHHHHHHHHh--------cCCchHHHHHHHHHH
Q 003150 374 YIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVV---MFTAMISGYVL--------NGISHEALEKFRWLI 442 (844)
Q Consensus 374 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~ 442 (844)
....|+. ..+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|+++.
T Consensus 158 ----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 158 ----SQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0011221 2233344455555555555554443332 22222222221 135666666666665
Q ss_pred HcCCCCChh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHH
Q 003150 443 QEKIIPNTV-TLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNS 521 (844)
Q Consensus 443 ~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 521 (844)
+.. |+.. .+..+. .+|..
T Consensus 230 ~~~--p~~~~~~~~~~-----------------------------------------------------------~~~~~ 248 (537)
T 3fp2_A 230 SAN--TVDDPLRENAA-----------------------------------------------------------LALCY 248 (537)
T ss_dssp C----CCCHHHHHHHH-----------------------------------------------------------HHHHH
T ss_pred HHC--CCcchhhHHHH-----------------------------------------------------------HHHHH
Confidence 532 2221 111111 12223
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGN 601 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 601 (844)
+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 333444455555555555555443 2334445555555555566666666655555543 2345667788888888899
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHH
Q 003150 602 LDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHC 677 (844)
Q Consensus 602 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~ 677 (844)
+++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...|+.
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999888887653 45678889999999999999999999999884 454 45788888889999999999999999
Q ss_pred hHhhcCCCCC----chHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003150 678 MTEEYGIPAR----MEHYACMVDLFGRA----------GRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEV 741 (844)
Q Consensus 678 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 741 (844)
+.+...-.+. ...+..+..++.+. |++++|.+.++++ ...| +..+|..+...+...|+.+.|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 8764211121 22344556778888 9999999999988 3344 46889999999999999999999
Q ss_pred HHHHhhcCCCCCCchHHHH
Q 003150 742 ASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 742 ~~~~~~~~~p~~~~~~~~l 760 (844)
.+++++++.|+++.....+
T Consensus 484 ~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHH
Confidence 9999999999987765543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=1.6e-16 Score=169.06 Aligned_cols=202 Identities=10% Similarity=0.068 Sum_probs=151.2
Q ss_pred HHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHH
Q 003150 559 SACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKD 635 (844)
Q Consensus 559 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 635 (844)
..+...|+++.|...++.+.+.. +.+...+..+...|...|++++|.+.|+...+ .+...|..+...|...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44455566666666666655543 33556677788888888888888888887654 467788888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHH------------HHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-c----hHHHHHHHH
Q 003150 636 SLALFHEMLNNKIKPDHV-TFL------------AIISACGHAGQVEAGIHYFHCMTEEYGIPAR-M----EHYACMVDL 697 (844)
Q Consensus 636 A~~l~~~m~~~g~~pd~~-t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~ 697 (844)
|...|++..+ ..|+.. .+. .+...+...|++++|...++.+.+. .|+ . ..+..++.+
T Consensus 207 A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 207 SLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 9999988887 455543 222 2245678889999999999988774 343 2 335567888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh
Q 003150 698 FGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 766 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 766 (844)
+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.++..|+.++..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 89999999999998887 3345 568888888889999999999999999999999998888888776543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=1.4e-16 Score=169.33 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=201.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHH
Q 003150 493 DMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHY 569 (844)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 569 (844)
..+...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 344444455555544444322 233444444555555555555555555544432 1123344444444455555555
Q ss_pred HHHHHHHHHHhCCC--CchhHHH------------HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC
Q 003150 570 GKEIHSLMIKDSCR--SDNIAES------------VLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGH 632 (844)
Q Consensus 570 a~~~~~~~~~~g~~--~~~~~~~------------~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 632 (844)
|...++.+.+.... .+...+. .+...+...|++++|.+.|+++.+ .+...|..+...|...|+
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC
Confidence 55555544443210 1222222 236788999999999999998764 467889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHH------------HHHHHH
Q 003150 633 LKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYA------------CMVDLF 698 (844)
Q Consensus 633 ~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~------------~l~~~~ 698 (844)
+++|+..++++.+. .| +..++..+...+...|++++|...|+.+.+. .| +...+. .++..+
T Consensus 170 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 170 PRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999984 45 4568888888999999999999999999773 34 333333 337779
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 699 GRAGRLNKALETINSM-PFAPD-A----GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 699 ~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|...++++++.+|+++.++..++.+|...|++++
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999987 33444 2 3355677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 003150 773 VNKIRRLMKER 783 (844)
Q Consensus 773 a~~~~~~m~~~ 783 (844)
|.+.+++..+.
T Consensus 325 A~~~~~~a~~~ 335 (359)
T 3ieg_A 325 AIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.2e-16 Score=165.77 Aligned_cols=286 Identities=13% Similarity=0.048 Sum_probs=224.0
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHH
Q 003150 482 DGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAAL 558 (844)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 558 (844)
+.+..+...+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+..++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44555666666777777888888887777643 245566667777778888888888888877643 22455666677
Q ss_pred HHHhchh-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH
Q 003150 559 SACANLH-ALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLK 634 (844)
Q Consensus 559 ~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 634 (844)
..+...| ++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888888777654 33566788889999999999999999987764 35677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcC-------CCCCchHHHHHHHHHHhcCCHHH
Q 003150 635 DSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYG-------IPARMEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 635 ~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 706 (844)
+|...|++..+. .|+ ..++..+...+...|++++|..+++.+.+... .+.....+..++.++.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999984 454 46788888899999999999999999876421 13346789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH-HhcCCcc
Q 003150 707 ALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH-ADAGQWG 771 (844)
Q Consensus 707 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~ 771 (844)
|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999987 3344 4688999999999999999999999999999999999999999988 4455443
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.4e-16 Score=162.08 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=124.3
Q ss_pred cCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHH
Q 003150 295 KSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGY 374 (844)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 374 (844)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 9999999999999999999999763 6888999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 003150 375 IIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLS 454 (844)
Q Consensus 375 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 454 (844)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------------
Confidence 7774 45678899999999999999999988864 67779999999999999999999998866
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchH
Q 003150 455 SILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEE 534 (844)
Q Consensus 455 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 534 (844)
..|..|++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.
T Consensus 149 -------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 149 -------------------------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp -------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHH
Confidence 13455667788888888888888887 377888888888888888888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHHhc
Q 003150 535 AIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK--CGNLDFARTVFDMM 612 (844)
Q Consensus 535 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~ 612 (844)
|......+. +.|+. ...++..|.+.|.++++..+++...... +-...+|+-|.-+|+| -+++.+..+.|..-
T Consensus 196 A~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 196 AQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 855444321 33433 4467777888888888888888777554 4556677777777765 45667777777643
Q ss_pred CC--------CChHHHHHHHHHHHhcCChHHHHHH
Q 003150 613 QR--------KQEAAWNSMIAAYGCHGHLKDSLAL 639 (844)
Q Consensus 613 ~~--------~~~~~~~~li~~~~~~g~~~~A~~l 639 (844)
.. .+...|..++-.|.+.++++.|...
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 32 2456799999999999999988763
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.5e-14 Score=160.82 Aligned_cols=211 Identities=7% Similarity=0.011 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---C-ChHHHHHHHHHHHh
Q 003150 568 HYGKEIHSLMIKDSCRSDNIAESVLIDLYAK-------CGNLD-------FARTVFDMMQR---K-QEAAWNSMIAAYGC 629 (844)
Q Consensus 568 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 629 (844)
+.+..+++.++... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36667787777652 4467788888888875 79987 89999998764 3 57899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHH-HHhcCCHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDH--VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDL-FGRAGRLN 705 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 705 (844)
.|++++|..+|+++++ +.|+. ..|..+...+.+.|++++|+++|+...+. .| +...|...+.+ +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999999 57764 47888888888999999999999999763 44 33444433333 34689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHhcCCcchHHHHHHH
Q 003150 706 KALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG----YYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 706 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
+|.+++++. ...| ++..|..++......|+.+.|..++++++...|.++. .|..........|+.+++.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 3345 4789999999999999999999999999999887765 777778888889999999999888
Q ss_pred HHHcC
Q 003150 780 MKERG 784 (844)
Q Consensus 780 m~~~~ 784 (844)
+.+.-
T Consensus 489 ~~~~~ 493 (530)
T 2ooe_A 489 RFTAF 493 (530)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 76643
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.8e-16 Score=160.82 Aligned_cols=262 Identities=13% Similarity=0.072 Sum_probs=225.7
Q ss_pred CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003150 514 KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLI 593 (844)
Q Consensus 514 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 593 (844)
.+...+..+...+...|++++|+++|+++.... +.+...+..+..++...|++++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888889999999999999999998764 2334556667788899999999999999999864 34567888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCH
Q 003150 594 DLYAKCG-NLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQV 668 (844)
Q Consensus 594 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 668 (844)
..|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999998764 45788999999999999999999999999984 454 46777788899999999
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHH
Q 003150 669 EAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PF----------APDAGVWGTLLGACRVHGNVE 737 (844)
Q Consensus 669 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~ 737 (844)
++|.++++.+.+. .+.+...+..++.++.+.|++++|.+.+++. .. ..+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999762 2336788999999999999999999999887 11 233578999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 738 LAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
.|+..++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998543
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=2.7e-14 Score=158.74 Aligned_cols=365 Identities=10% Similarity=0.016 Sum_probs=279.6
Q ss_pred chHHHHHHHHHhhh----CCCHHHHHHHHHhCCC-CChhhHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhH
Q 003150 383 DAFLKSALIDIYFK----CRDVKMACKVFKENTA-ADVVMFTAMISGYVL----NGISHEALEKFRWLIQEKIIPNTVTL 453 (844)
Q Consensus 383 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 453 (844)
+......|...|.. .+++++|...|++..+ .+...+..|...|.. .++.++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55566666666666 6778888877776332 456667777777777 777888888888777754 44444
Q ss_pred HHHHHHHhc----ccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHhHHHHHH
Q 003150 454 SSILPACAD----LAALKLGKELHCYILKNGLDGKCHVGSAITDMYAK----CGRLDLAYKIFKRMSE-KDVVCWNSMIT 524 (844)
Q Consensus 454 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 524 (844)
..+-..+.. .+++++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555 567788888888777765 34556667777776 7889999999987654 46778888888
Q ss_pred HHHH----cCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----hhchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003150 525 RYSQ----NGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACAN----LHALHYGKEIHSLMIKDSCRSDNIAESVLIDLY 596 (844)
Q Consensus 525 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 596 (844)
.|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8888 889999999999988765 44556666666654 788999999999888765 345666777888
Q ss_pred Hh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC
Q 003150 597 AK----CGNLDFARTVFDMMQR-KQEAAWNSMIAAYGCH-----GHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG 666 (844)
Q Consensus 597 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 666 (844)
.. .++.++|.+.|+...+ .+...+..+...|... +++++|+.+|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 87 8999999999998765 4677888888888887 89999999999999865 3445566666666655
Q ss_pred ---CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 003150 667 ---QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR----AGRLNKALETINSMPFAPDAGVWGTLLGACRV----HGN 735 (844)
Q Consensus 667 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~ 735 (844)
+.++|.++|+...+. .++..+..|..+|.. .+++++|.+.+++.--..++..+..|...+.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 889999999999773 467788899999988 89999999999988323467788888888887 899
Q ss_pred HHHHHHHHHHhhcCCCC---CCchHHHHHHHHHh
Q 003150 736 VELAEVASSHLFDLDPQ---NSGYYVLLSNIHAD 766 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 766 (844)
.++|...++++++.+|+ ++.....|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 77777778777654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=3e-16 Score=167.72 Aligned_cols=278 Identities=10% Similarity=0.015 Sum_probs=216.3
Q ss_pred HHhcCCHHHHHH-HHHhcCC--C-----ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 495 YAKCGRLDLAYK-IFKRMSE--K-----DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 495 ~~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
+...|++++|.+ .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444567777777 7775432 1 34567778888888888888888888888754 3355677777778888888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChHHHHH---------------HHHHHH
Q 003150 567 LHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEAAWNS---------------MIAAYG 628 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 628 (844)
++.|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888888765 34677788888899999999999998887653 2 2222221 233344
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHH
Q 003150 629 CHGHLKDSLALFHEMLNNKIKPD---HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLN 705 (844)
Q Consensus 629 ~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 705 (844)
..|++++|+..|+++.+ ..|+ ..++..+...+...|++++|+.+|+.+.+. .+.++..+..++.++.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 89999999999999998 4565 678888999999999999999999999773 2335788999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-----------CchHHHHHHHHHhcCCcch
Q 003150 706 KALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN-----------SGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 706 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~ 772 (844)
+|.+.++++ ...|+ ..+|..+...+...|+++.|...+++++++.|++ +..|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 44454 6889999999999999999999999999999988 7899999999999999999
Q ss_pred HHHHHH
Q 003150 773 VNKIRR 778 (844)
Q Consensus 773 a~~~~~ 778 (844)
|..+++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 999876
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.8e-16 Score=164.98 Aligned_cols=285 Identities=12% Similarity=0.120 Sum_probs=132.7
Q ss_pred hCCCHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHH
Q 003150 396 KCRDVKMACKVFKENTAADVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCY 475 (844)
Q Consensus 396 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 475 (844)
+.|++++|.++++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999986654 8999999999999999999999653 6778999999999999999999998887
Q ss_pred HHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHH
Q 003150 476 ILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLS 555 (844)
Q Consensus 476 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 555 (844)
..+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 4557888999999999999999888875 377789999999999999999999999977 3688
Q ss_pred HHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH
Q 003150 556 AALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKD 635 (844)
Q Consensus 556 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 635 (844)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888889999999988888877 367888888899999999999977766654 444445568888999999999
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC------CchHHHHHHHHHHhcCCHHH
Q 003150 636 SLALFHEMLNNKIKPDH---VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA------RMEHYACMVDLFGRAGRLNK 706 (844)
Q Consensus 636 A~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~ 706 (844)
|+.++++.+. ..|.. .|...++.+-.+.|++.+.++.|..- -+++| +...|.-++-+|...|+++.
T Consensus 226 ai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999888775 44443 24444444555566677777766532 35555 46788889999999999998
Q ss_pred HHHHHHhC
Q 003150 707 ALETINSM 714 (844)
Q Consensus 707 A~~~~~~~ 714 (844)
|...+-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 88776665
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=2.4e-14 Score=160.95 Aligned_cols=406 Identities=10% Similarity=0.093 Sum_probs=256.8
Q ss_pred CccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-ccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHH
Q 003150 313 NLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPD-EITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALI 391 (844)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 391 (844)
|...|..++. +.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+++.|..+++..++.. |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 4556777776 46677788888888877753 233 3334555555555666666666666665543 3555555555
Q ss_pred HH-hhhCCCHHHHHH----HHHhC------CCCChhhHHHHHHHHHh---------cCCchHHHHHHHHHHHcCCCCCh-
Q 003150 392 DI-YFKCRDVKMACK----VFKEN------TAADVVMFTAMISGYVL---------NGISHEALEKFRWLIQEKIIPNT- 450 (844)
Q Consensus 392 ~~-~~~~g~~~~A~~----~~~~~------~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~- 450 (844)
.. ....|+.+.|.+ +|++. ...+...|...+....+ .|++++|..+|++.+.. |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 32 233455554443 44432 11234556555554433 45666666666666552 221
Q ss_pred --hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHh-------cC------CCC
Q 003150 451 --VTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKR-------MS------EKD 515 (844)
Q Consensus 451 --~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~------~~~ 515 (844)
..|..........+. ..+. .++. .+.++++.|..+++. +. .|+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 112111110000000 0000 0000 123345556555543 11 111
Q ss_pred --------hHhHHHHHHHHHHc----CCc----hHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-------hhchH----
Q 003150 516 --------VVCWNSMITRYSQN----GKP----EEAIDLFRQMAIEGVKHDCMSLSAALSACAN-------LHALH---- 568 (844)
Q Consensus 516 --------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~---- 568 (844)
...|...+...... ++. ++|+.+|++..... +-+...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 24566555433332 222 36778888887642 2245556666655554 68876
Q ss_pred ---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch-HHHHHHHHHHHhcCChHHHHHHHH
Q 003150 569 ---YGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QE-AAWNSMIAAYGCHGHLKDSLALFH 641 (844)
Q Consensus 569 ---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~ 641 (844)
+|..+++..++.-.+.+...+..++..+.+.|++++|.++|+++.+ | +. ..|...+..+.+.|+.++|.++|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888887633445688899999999999999999999998764 3 33 589999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHH-HhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 003150 642 EMLNNKIKPD-HVTFLAIISA-CGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM----P 715 (844)
Q Consensus 642 ~m~~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 715 (844)
+..+. .|+ ...+...... +...|+.++|..+|+...+.. +.++..|..+++.+.+.|+.++|..++++. +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99984 443 2333332222 335899999999999998742 336788999999999999999999999987 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 716 FAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 716 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
..|+ ..+|...+.....+|+.+.+..+.+++.+..|++
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 3443 4589999999999999999999999999998853
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=7.8e-15 Score=150.06 Aligned_cols=267 Identities=10% Similarity=-0.021 Sum_probs=210.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh----HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHH
Q 003150 494 MYAKCGRLDLAYKIFKRMSEKDV----VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHY 569 (844)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 569 (844)
-....|++..|...++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34568999999999888765432 3445578899999999999986654 235667788888888899999999
Q ss_pred HHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003150 570 GKEIHSLMIKDSCRS-DNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKI 648 (844)
Q Consensus 570 a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 648 (844)
|.+.++.+...+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+ .
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 999999988877544 566677788999999999999999998 46788999999999999999999999999998 4
Q ss_pred CCCHHHH---HHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 003150 649 KPDHVTF---LAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVW 723 (844)
Q Consensus 649 ~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 723 (844)
.|+.... ..++..+...|++++|..+|+++.+. .++++..+..++.++.+.|++++|.+.+++. ...|+ +.+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5776422 12233344568999999999999884 4557888999999999999999999999987 44554 6789
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHH
Q 003150 724 GTLLGACRVHGNVEL-AEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 774 (844)
..++..+...|+.+. +...++++++++|+++.+.. +..+.+.++++.
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~ 285 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLV 285 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHH
Confidence 999988888998765 67889999999999976543 344444444444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=8.2e-16 Score=164.14 Aligned_cols=257 Identities=11% Similarity=-0.014 Sum_probs=186.2
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDL 595 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 595 (844)
...|..+...+.+.|++++|++.|+++.... +.+..++..+..++...|++++|...++.+.+.. +.+...+..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345555556666666666666666655532 2234455555556666666666666666665543 2345667777777
Q ss_pred HHhcCCHHHHHHHHHhcCCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQRKQ-------------EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD---HVTFLAII 659 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll 659 (844)
|.+.|++++|.+.|+++.+.+ ...+..+...|...|++++|+..|+++.+. .|+ ..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHH
Confidence 777888888887777665311 223445678889999999999999999984 554 67888888
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVE 737 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 737 (844)
..+...|++++|+++|+.+.+. .+.+...|..++.+|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 8999999999999999999773 2336888999999999999999999999887 44555 788999999999999999
Q ss_pred HHHHHHHHhhcCCCC------------CCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 738 LAEVASSHLFDLDPQ------------NSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.|...+++++++.|+ +...+..|+.++...|+.+.+.++.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999887 36778999999999999998887765
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=3.3e-13 Score=150.00 Aligned_cols=352 Identities=12% Similarity=0.015 Sum_probs=291.7
Q ss_pred CCChhhHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----ccchHHHHHHHHHHHHhCCCC
Q 003150 412 AADVVMFTAMISGYVL----NGISHEALEKFRWLIQEKIIPNTVTLSSILPACAD----LAALKLGKELHCYILKNGLDG 483 (844)
Q Consensus 412 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~ 483 (844)
..+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3466777778888888 899999999999998874 45566666666766 889999999999998875
Q ss_pred CccchHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChHhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCChHHH
Q 003150 484 KCHVGSAITDMYAK----CGRLDLAYKIFKRMSEK-DVVCWNSMITRYSQ----NGKPEEAIDLFRQMAIEGVKHDCMSL 554 (844)
Q Consensus 484 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 554 (844)
+...+..|..+|.. .+++++|.+.|++..+. +...+..+...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55667778888888 88999999999987654 67788888888887 789999999999998875 56666
Q ss_pred HHHHHHHhc----hhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHH
Q 003150 555 SAALSACAN----LHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK----CGNLDFARTVFDMMQR-KQEAAWNSMIA 625 (844)
Q Consensus 555 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 625 (844)
..+-..+.. .++.++|..++....+.| +...+..+..+|.. .+++++|.+.|+...+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777766 789999999999998876 45677788888886 8999999999998765 56778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhh-----CCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 626 AYGC----HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHA-----GQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 626 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
.|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|..+|+...+. .++..+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8887 899999999999998865 344556666667666 8999999999998773 24567888889
Q ss_pred HHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh---
Q 003150 697 LFGRAG---RLNKALETINSMPFAPDAGVWGTLLGACRV----HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD--- 766 (844)
Q Consensus 697 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 766 (844)
+|.+.| ++++|.+++++.--..++..+..|...+.. .+|.+.|...++++.+.. ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 988867 889999999988323678889999998888 899999999999998864 68899999999998
Q ss_pred -cCCcchHHHHHHHHHHcC
Q 003150 767 -AGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 767 -~g~~~~a~~~~~~m~~~~ 784 (844)
.++.++|.+.+++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 899999999999887766
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.2e-14 Score=159.03 Aligned_cols=361 Identities=10% Similarity=-0.025 Sum_probs=215.2
Q ss_pred CchHHHHHHHHHhhhCCCHHHHHHHHHhC------------CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHHcC----
Q 003150 382 LDAFLKSALIDIYFKCRDVKMACKVFKEN------------TAADVVMFTAMISGYVLNGISHEALEKFRWLIQEK---- 445 (844)
Q Consensus 382 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---- 445 (844)
.....||.|...|...|+.++|.+.|++. .....++|+.+...|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888888888888877652 11234677778888888888888888777665420
Q ss_pred --CCCC-hhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHh--cCCHHHHHHHHHhcCC--C-ChH
Q 003150 446 --IIPN-TVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAK--CGRLDLAYKIFKRMSE--K-DVV 517 (844)
Q Consensus 446 --~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~--~-~~~ 517 (844)
..++ ..++ +.+..++.+ .+++++|.+.|++..+ | +..
T Consensus 129 ~~~~~~~~~~~-----------------------------------~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 129 SPYRIESPELD-----------------------------------CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp CSSCCCCHHHH-----------------------------------HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred cccchhhHHHH-----------------------------------HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 0111 1112 112222222 3356667777665532 3 344
Q ss_pred hHHHHHHH---HHHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh----chhchHHHHHHHHHHHHhCCCCchhHH
Q 003150 518 CWNSMITR---YSQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACA----NLHALHYGKEIHSLMIKDSCRSDNIAE 589 (844)
Q Consensus 518 ~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~ 589 (844)
.+..+... +...++.++|++.+++..+.. |+ ...+..+...+. ..++.++|.++++...+.. +.+...+
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 44444333 344566777777777766543 33 333333333332 3456677777777776654 3455667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCC
Q 003150 590 SVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGC-------------------HGHLKDSLALFHEMLNNK 647 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g 647 (844)
..+...|.+.|++++|.+.|++..+ .+..+|..+...|.. .+..++|...|++..+
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-- 328 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE-- 328 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--
Confidence 7788888888888888888876653 345566666555532 2346778888888877
Q ss_pred CCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCch----HHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCH
Q 003150 648 IKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARME----HYACMVD-LFGRAGRLNKALETINSM-PFAPDA 720 (844)
Q Consensus 648 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~ 720 (844)
..|+. .++..+...+...|++++|+.+|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+.
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 45554 46777888899999999999999988762 33322 2333333 235678999999998887 667775
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCeeEE
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGYSWI 794 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 794 (844)
..+... .+.++.++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 406 ~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 406 REKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 444332 34556778888999999999999999999999999999999998777664443445554
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=2.2e-15 Score=160.94 Aligned_cols=275 Identities=11% Similarity=0.021 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHH-HHHHHHHCCC-CC--ChHHHHHHHHHHhchhchHHHHHHH
Q 003150 499 GRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAID-LFRQMAIEGV-KH--DCMSLSAALSACANLHALHYGKEIH 574 (844)
Q Consensus 499 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~ 574 (844)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555443322 3445688899998 8886654321 11 3456778888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003150 575 SLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD 651 (844)
Q Consensus 575 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 651 (844)
+.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999874 45677888999999999999999999997763 47889999999999999999999999999984 455
Q ss_pred HHHHHH----------------HHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003150 652 HVTFLA----------------IISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM- 714 (844)
Q Consensus 652 ~~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 714 (844)
...... .+..+...|++++|..+|+.+.+...-.++...+..++.+|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432211 244445899999999999999874322225788999999999999999999999987
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 715 PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 715 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...|+ ..+|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44454 6899999999999999999999999999999999999999999999999999999999887653
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=6e-15 Score=150.90 Aligned_cols=246 Identities=11% Similarity=0.041 Sum_probs=201.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKHDC--MSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCG 600 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 600 (844)
|.-....|++..|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999998876543 3443 3456677899999999999875543 24667888899999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHH
Q 003150 601 NLDFARTVFDMMQ----RK-QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 601 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
+.++|.+.++++. .| +...+..+...|...|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566778888999999999999999987 355678888888999999999999999
Q ss_pred HHhHhhcCCCCCchH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 676 HCMTEEYGIPARMEH---YACMVDLFGRAGRLNKALETINSM--PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 676 ~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
+.+.+. .|+... ..+++..+...|++++|..+++++ ..++++.+|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 465321 123445666679999999999998 334567899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcch-HHHHHHHHHHc
Q 003150 751 PQNSGYYVLLSNIHADAGQWGN-VNKIRRLMKER 783 (844)
Q Consensus 751 p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~~ 783 (844)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987 56788877654
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=6.3e-15 Score=157.23 Aligned_cols=231 Identities=14% Similarity=0.051 Sum_probs=195.8
Q ss_pred ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 003150 550 DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAA 626 (844)
Q Consensus 550 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 626 (844)
+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999999875 45678899999999999999999999998764 468899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 003150 627 YGCHGHLKDSLALFHEMLNNKIKPDHV-----------TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMV 695 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 695 (844)
|...|++++|+..|+++.+ +.|+.. .+..+...+...|++++|+.+|+.+.+...-.+++..+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 456543 223346788999999999999999988532222688999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchH
Q 003150 696 DLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNV 773 (844)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 773 (844)
.+|.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|+..++++++++|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 3444 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 003150 774 NKIRRLMKER 783 (844)
Q Consensus 774 ~~~~~~m~~~ 783 (844)
.+.+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=5.5e-15 Score=154.83 Aligned_cols=254 Identities=10% Similarity=-0.017 Sum_probs=175.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003150 520 NSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKC 599 (844)
Q Consensus 520 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 599 (844)
..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 333444444444444444444444322 1123333334444444444444444444444432 22344555566666666
Q ss_pred CCHHHHHHHHHhcCC--C-ChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003150 600 GNLDFARTVFDMMQR--K-QEAAWNSM--------------IA-AYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIIS 660 (844)
Q Consensus 600 g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~ 660 (844)
|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+. .| +..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 666666666665542 1 12222222 22 377888999999999999884 44 4568888888
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 738 (844)
.+...|++++|.++++.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+++.
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999773 2336788999999999999999999999887 3444 46889999999999999999
Q ss_pred HHHHHHHhhcCCCC------------CCchHHHHHHHHHhcCCcchHHHHHHH
Q 003150 739 AEVASSHLFDLDPQ------------NSGYYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 739 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
|...+++++++.|+ ++..+..++.+|...|++++|..++++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999 788999999999999999999998763
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=177.24 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=127.9
Q ss_pred CCCcchHHHHHHHhhccCChHHHHHHHhcCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhH
Q 003150 179 EIDVFVGSSLVKLYTENRCIDEARYVFDKMS-------QRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTF 251 (844)
Q Consensus 179 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 251 (844)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997753 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCc-hHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC-----CCccchHHHHHHHH
Q 003150 252 ACILSVCAVEAMT-DFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ-----INLVTWNGMIAGHV 325 (844)
Q Consensus 252 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 325 (844)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.. +.+.+.+.|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 78999999999999999999999999988887777777666655542 12334455666666
Q ss_pred hCC
Q 003150 326 QNG 328 (844)
Q Consensus 326 ~~g 328 (844)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=174.21 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=91.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003150 583 RSDNIAESVLIDLYAKCGNLDFARTVFDMMQ-------RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF 655 (844)
Q Consensus 583 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 655 (844)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445577777777777777777777776543 367777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhhCC-HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHH
Q 003150 656 LAIISACGHAGQ-VEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALET 710 (844)
Q Consensus 656 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 710 (844)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....|.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 777777777776 46777777777774 7777777777777666655444444333
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=3.2e-14 Score=138.87 Aligned_cols=194 Identities=12% Similarity=0.078 Sum_probs=158.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003150 583 RSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAI 658 (844)
Q Consensus 583 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~l 658 (844)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667778888999999999999999998764 4678899999999999999999999999998 56765 577788
Q ss_pred HHHHhhh-----------CCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003150 659 ISACGHA-----------GQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGT 725 (844)
Q Consensus 659 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 725 (844)
...+... |++++|+..|+...+ +.| +...+..+..+|...|++++|++.+++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 999999999999977 356 5788999999999999999999999987 22277899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 726 LLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887543
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=3.1e-14 Score=149.11 Aligned_cols=257 Identities=12% Similarity=0.100 Sum_probs=163.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhch
Q 003150 491 ITDMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHAL 567 (844)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 567 (844)
+...+...|++++|...|+++.+ .+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCH
Confidence 33444555555555555554432 234445555555555555555555555554432 12334444455555555555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHh
Q 003150 568 HYGKEIHSLMIKDSCRSDNIAESVL--------------ID-LYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGC 629 (844)
Q Consensus 568 ~~a~~~~~~~~~~g~~~~~~~~~~l--------------i~-~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 629 (844)
++|...++.+.+.... +...+..+ .. .+...|++++|.+.++++.+ .+...|..+...|..
T Consensus 106 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 5555555555543211 11111111 22 36667777888877776553 356778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKAL 708 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 708 (844)
.|++++|+..++++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|.
T Consensus 185 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 88888888888888873 444 457777778888888888888888888663 2335777888888888888888888
Q ss_pred HHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 709 ETINSM-PFAPD-------------AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 709 ~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
+.++++ ...|+ ..+|..+...+...|+.+.|...++++++..|++
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 888776 22333 5788888888899999999999888877765543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.6e-13 Score=137.98 Aligned_cols=218 Identities=11% Similarity=0.077 Sum_probs=157.8
Q ss_pred HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003150 517 VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLY 596 (844)
Q Consensus 517 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 596 (844)
..|..+...+...|++++|+..|++..+.. ++ ...+..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD-----------------------------------ITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC-----------------------------------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc-----------------------------------HHHHHHHHHHH
Confidence 345555566666666666666666655543 33 44445555555
Q ss_pred HhcCCHHHHHHHHHhcCC--C----C----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC
Q 003150 597 AKCGNLDFARTVFDMMQR--K----Q----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG 666 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 666 (844)
...|++++|.+.|+...+ | + ...|..+...|...|++++|+..|++..+ +.|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 666666666666555442 1 1 46677778888888888888888888887 45663 3355667
Q ss_pred CHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003150 667 QVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVAS 743 (844)
Q Consensus 667 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 743 (844)
++++|...++.+.. ..| +...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888765 344 4677888888888889999988888887 3333 4678888888888889999999999
Q ss_pred HHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 744 SHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 744 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888876543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.8e-13 Score=137.65 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=180.7
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHhcCC--CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCChHHHHHHHHHH
Q 003150 486 HVGSAITDMYAKCGRLDLAYKIFKRMSE--KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGV--KHDCMSLSAALSAC 561 (844)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~ 561 (844)
..+..+...+...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---------
Confidence 4567788899999999999999987643 6788899999999999999999999999876321 11110
Q ss_pred hchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHH
Q 003150 562 ANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQEAAWNSMIAAYGCHGHLKDSLAL 639 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l 639 (844)
.....+..+...|.+.|++++|.+.|++..+ ++ ...+...|++++|+..
T Consensus 77 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 ----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKK 127 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHH
Confidence 0134455666677777777777777776553 33 2345667788888888
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 003150 640 FHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFA 717 (844)
Q Consensus 640 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 717 (844)
++++.. ..|+. ..+..+...+...|++++|...|+.+.+. .+.++..+..++.++.+.|++++|.+.+++. ...
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888 45655 46777777888899999999999988773 2336778888999999999999999998887 334
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCCCchHHHHHHH
Q 003150 718 PD-AGVWGTLLGACRVHGNVELAEVASSHLFDLD------PQNSGYYVLLSNI 763 (844)
Q Consensus 718 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 763 (844)
|+ ...|..+...+...|+.+.|...++++++++ |++...+..|+.+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 44 6888889999999999999999999999998 8877777666543
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=4.9e-13 Score=148.10 Aligned_cols=235 Identities=9% Similarity=-0.016 Sum_probs=125.1
Q ss_pred hcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhchhchHHHHH
Q 003150 497 KCGRLDLAYKIFKRMS---EKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDC-MSLSAALSACANLHALHYGKE 572 (844)
Q Consensus 497 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~ 572 (844)
..++.++|.+.+++.. ..+...+..+...|.+.|++++|++.|++..+. .|+. .++..+..++...+....+
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~-- 300 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN-- 300 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh--
Confidence 3456677777777653 235677888888888999999999988888764 3543 3333332222111110000
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003150 573 IHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIK 649 (844)
Q Consensus 573 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 649 (844)
. ............+..+.|...|+...+ .+..+|..+...|...|++++|+..|++.++....
T Consensus 301 -------~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 301 -------L-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp -------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred -------H-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 0 000011111122345677777776543 45667888999999999999999999999984333
Q ss_pred CCHH--HHHHHHH-HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 003150 650 PDHV--TFLAIIS-ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWG 724 (844)
Q Consensus 650 pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 724 (844)
|... .+..+.. ...+.|+.++|+..|++..+ +.|+.....-. .+.+.+++++. ...| ++.+|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 2221 2233322 34578999999999998865 56653322222 23333444333 2233 468899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 725 TLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 725 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
.|...+...|+.++|+..+++++++.|.+|.++.-+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999999999999999988776554
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.8e-13 Score=136.06 Aligned_cols=239 Identities=10% Similarity=-0.067 Sum_probs=172.8
Q ss_pred CCchHHHHHHHHHHHCCCC---CChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 003150 530 GKPEEAIDLFRQMAIEGVK---HDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFAR 606 (844)
Q Consensus 530 g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 606 (844)
|++++|++.|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443211 123344444445555555555555555555443 235667778888888999999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcC
Q 003150 607 TVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYG 683 (844)
Q Consensus 607 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 683 (844)
+.|++..+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 99887764 4678899999999999999999999999998 5677766666666678889999999999888763
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 684 IPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 684 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|++...+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 34444444 4777888888999999999887 33332 57888899999999999999999999999999885544
Q ss_pred HHHHHHHHhcCCcchHHHHH
Q 003150 758 VLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~ 777 (844)
+.++...|++++|.+.+
T Consensus 253 ---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 ---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHhhHHHH
Confidence 66778888888887665
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=3.5e-13 Score=136.85 Aligned_cols=243 Identities=10% Similarity=0.011 Sum_probs=148.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhch
Q 003150 488 GSAITDMYAKCGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANL 564 (844)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 564 (844)
.......+...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------- 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH-------------
Confidence 34445556666666666666665532 23445666666666666666666666666553211111
Q ss_pred hchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 003150 565 HALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFH 641 (844)
Q Consensus 565 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 641 (844)
....+..+...|.+.|++++|.+.|+...+ .+...|..+...|...|++++|+..|+
T Consensus 73 --------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 73 --------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred --------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 122345556666666666666666665442 345566677777777777777777777
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCC---HHHHHHHHHhC--
Q 003150 642 EMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGR---LNKALETINSM-- 714 (844)
Q Consensus 642 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-- 714 (844)
+..+ ..|+.. .+..+...+...+++++|.+.|+.+.+. .| +...+..+..++...|+ +++|...+++.
T Consensus 133 ~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 133 KQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp GGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 7666 344443 4444442444455777777777777652 33 35566666677766666 55566555554
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcC
Q 003150 715 --PFAPD------AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 768 (844)
Q Consensus 715 --~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 768 (844)
...|+ ..+|..+...+...|+++.|...++++++++|+++.++..+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11233 2567778888899999999999999999999999988888877655444
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=6.4e-12 Score=125.86 Aligned_cols=206 Identities=13% Similarity=0.048 Sum_probs=141.0
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDL 595 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 595 (844)
...|..+...+...|++++|++.|+++.... | .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 4567778888888888888888888876642 2 123344555666
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAG 671 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a 671 (844)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+++|+++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666665442 35566777777777777777777777777664345544 4566666677778888888
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 672 IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 672 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
.++|+.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...+++++++
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888777663 1224666777777777778888887777776 3333 3566667777777778888888888888888
Q ss_pred CCCCCchHHH
Q 003150 750 DPQNSGYYVL 759 (844)
Q Consensus 750 ~p~~~~~~~~ 759 (844)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 8877665543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=6.7e-12 Score=137.17 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=151.5
Q ss_pred hHHHHHHHHhcC----CHHHHHHHHHhcCCCChHhHHHHHHHHHHcC---CchHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 003150 488 GSAITDMYAKCG----RLDLAYKIFKRMSEKDVVCWNSMITRYSQNG---KPEEAIDLFRQMAIEGVKHDCMSLSAALSA 560 (844)
Q Consensus 488 ~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 560 (844)
...|...|...+ ..+.+..+++.....+...+..|...|.+.| +.++|++.|++..+.|
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------------- 209 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------------- 209 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------
Confidence 334444455544 2333444455444445556666666666666 5666666666655554
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChHHHHHHHHH-H--HhcCCh
Q 003150 561 CANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKC----GNLDFARTVFDMMQRKQEAAWNSMIAA-Y--GCHGHL 633 (844)
Q Consensus 561 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~ 633 (844)
.++...+..|..+|... +++++|.+.|+.....+...+..|... | ...|++
T Consensus 210 ----------------------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 210 ----------------------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp ----------------------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCH
T ss_pred ----------------------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Confidence 22222223444555433 677788888877663356677777766 4 467889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC-----CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCCH
Q 003150 634 KDSLALFHEMLNNKIKPDHVTFLAIISACGHAG-----QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR----AGRL 704 (844)
Q Consensus 634 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 704 (844)
++|+.+|++..+.| +...+..|...|. .| ++++|.++|+... +.++..+..|..+|.. ..++
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 99999999988876 4455555555555 55 8999999988763 3366777788887776 3488
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh--cCCcchHHHHHH
Q 003150 705 NKALETINSMPFAPDAGVWGTLLGACRV----HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD--AGQWGNVNKIRR 778 (844)
Q Consensus 705 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~ 778 (844)
++|.+++++.--..++.....|...|.. ..|.+.|...++++.+..+. .....+..+... .++..+|.++.+
T Consensus 339 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 339 QKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999887222334445555555543 45889999999998887653 344455555333 234445666555
Q ss_pred HHH
Q 003150 779 LMK 781 (844)
Q Consensus 779 ~m~ 781 (844)
+.+
T Consensus 417 ~~~ 419 (452)
T 3e4b_A 417 QEL 419 (452)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=3e-12 Score=128.28 Aligned_cols=196 Identities=10% Similarity=-0.058 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISA 661 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a 661 (844)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 56677888999999999999999998763 46788999999999999999999999999984 45 55688888889
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 738 (844)
+...|++++|.++|+.+.+ .+..| +...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 33556 4778889999999999999999999987 3344 47889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 739 AEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999887654
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=4.3e-12 Score=124.42 Aligned_cols=196 Identities=12% Similarity=0.018 Sum_probs=141.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIIS 660 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~ 660 (844)
+...+..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|...|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 445566677777777777777777776543 35667777777778888888888888877773 34 4456666777
Q ss_pred HHhhh-CCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003150 661 ACGHA-GQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNV 736 (844)
Q Consensus 661 a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 736 (844)
.+... |++++|..+++.+.+ .+..| +...+..++.++...|++++|.+.++++ ...|+ ...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77777 888888888877766 23334 2566777777888888888888777776 33343 56777777777788888
Q ss_pred HHHHHHHHHhhcCCC-CCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 737 ELAEVASSHLFDLDP-QNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
+.|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888888888 77777777777788888888888877776543
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=7.2e-12 Score=122.81 Aligned_cols=209 Identities=14% Similarity=0.053 Sum_probs=160.4
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLID 594 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 594 (844)
+...|..+...+...|++++|++.|++..+.. | .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34556666777777777777777777665532 2 23445566677
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHH
Q 003150 595 LYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCH-GHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVE 669 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~ 669 (844)
.|...|++++|.+.|++..+ .+..+|..+...|... |++++|+..++++.+.+..|+. ..+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 77777788888777776543 3567888888899999 9999999999999884445554 57777888899999999
Q ss_pred HHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003150 670 AGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP--DAGVWGTLLGACRVHGNVELAEVASSHL 746 (844)
Q Consensus 670 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 746 (844)
+|..+|+.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999998773 2335788889999999999999999999887 3334 5667777777788899999999999999
Q ss_pred hcCCCCCCchHHHHH
Q 003150 747 FDLDPQNSGYYVLLS 761 (844)
Q Consensus 747 ~~~~p~~~~~~~~l~ 761 (844)
.+.+|+++.....+.
T Consensus 209 ~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 209 QANFPYSEELQTVLT 223 (225)
T ss_dssp HHHCTTCHHHHHHHC
T ss_pred HHhCCCCHHHHHHhc
Confidence 999999988776664
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1.2e-12 Score=130.29 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=126.9
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDL 595 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 595 (844)
...|..+...+...|++++|+..|++..+.. | .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHH
Confidence 3455556666666777777777776665532 2 123344455556
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGI 672 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 672 (844)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 6666666666666665442 355667777777777777777777777777632 234456666677777778888888
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 673 HYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 673 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
.+++.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|...++++++++
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 877777653 2335667777777777788888887777776 2233 35677777777778888888888888888888
Q ss_pred CCCCchHHHHHHHHHh
Q 003150 751 PQNSGYYVLLSNIHAD 766 (844)
Q Consensus 751 p~~~~~~~~l~~~y~~ 766 (844)
|+++..+..++.+...
T Consensus 224 p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHH 239 (243)
T ss_dssp TTCHHHHHHHTC----
T ss_pred cchHHHHHHHHHHHhh
Confidence 8887777766655443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=3.4e-12 Score=134.92 Aligned_cols=243 Identities=10% Similarity=0.058 Sum_probs=194.1
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhchhc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHD-CMSLSAALSACANLHA-LHYGKEIHSLMIKDSCRSDNIAESVLI 593 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 593 (844)
...|+.+...+.+.|++++|++.|++.... .|+ ...|..+..++...|+ +++|...++.+++.. +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 456777777888888888888888888764 344 4566666677777785 888888888888765 33677888889
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-hCCH
Q 003150 594 DLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGH-AGQV 668 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~-~g~~ 668 (844)
.+|.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+. ..|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998764 5788999999999999999999999999999 56655 578888888888 6665
Q ss_pred HHH-----HHHHHHhHhhcCCCC-CchHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-----
Q 003150 669 EAG-----IHYFHCMTEEYGIPA-RMEHYACMVDLFGRAG--RLNKALETINSMPFAPD-AGVWGTLLGACRVHG----- 734 (844)
Q Consensus 669 ~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g----- 734 (844)
++| +..|+.+.+ +.| +...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 477888766 456 5778888999999988 68999999988855565 577888888887764
Q ss_pred ---C-HHHHHHHHHHh-hcCCCCCCchHHHHHHHHHh
Q 003150 735 ---N-VELAEVASSHL-FDLDPQNSGYYVLLSNIHAD 766 (844)
Q Consensus 735 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 766 (844)
+ .+.|+.+++++ ++++|....+|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 99999999999888776543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.2e-12 Score=128.41 Aligned_cols=197 Identities=8% Similarity=0.031 Sum_probs=155.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAII 659 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll 659 (844)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .| +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3455667788889999999999999998764 46788999999999999999999999999984 44 456788888
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVE 737 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 737 (844)
..+...|++++|.++++.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999873 2346788999999999999999999999987 3334 5788999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 738 LAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
.|+..++++++..|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999886643
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=6.4e-11 Score=120.17 Aligned_cols=223 Identities=13% Similarity=0.033 Sum_probs=146.7
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLID 594 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 594 (844)
+..++..+...|...|++++|++.|++..+.+ + ...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~-----------------------------------~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E-----------------------------------NSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C-----------------------------------HHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C-----------------------------------HHHHHHHHH
Confidence 45566667777777777777777777776522 2 223334445
Q ss_pred HHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-
Q 003150 595 LYAK----CGNLDFARTVFDMMQR-KQEAAWNSMIAAYGC----HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH- 664 (844)
Q Consensus 595 ~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~- 664 (844)
.|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 6666666666665443 355566666666666 777777777777776653 45556666666666
Q ss_pred ---hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 003150 665 ---AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR----AGRLNKALETINSMPFAPDAGVWGTLLGACRV----H 733 (844)
Q Consensus 665 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~ 733 (844)
.|++++|+++|+...+. + +...+..+..+|.. .+++++|.+.+++.--..++..+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 67777777777776652 2 44556666677766 77777777777766212345666667777777 7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh----cCCcchHHHHHHHHHHcC
Q 003150 734 GNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD----AGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 784 (844)
++.+.|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788888888888777765 5677778888877 788888888777666554
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1e-11 Score=117.53 Aligned_cols=164 Identities=12% Similarity=0.095 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 003150 616 QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACM 694 (844)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 694 (844)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+...+...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456677788888888888888888888877 45655 46777777788888888888888877653 22346667777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 695 VDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
...+...+++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888887776 33443 57788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHc
Q 003150 773 VNKIRRLMKER 783 (844)
Q Consensus 773 a~~~~~~m~~~ 783 (844)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888766543
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=2.5e-11 Score=132.54 Aligned_cols=343 Identities=10% Similarity=0.001 Sum_probs=223.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccch---HHHHHHHHHHHHhCCCCCccchHHHHHHHHh
Q 003150 421 MISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAAL---KLGKELHCYILKNGLDGKCHVGSAITDMYAK 497 (844)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 497 (844)
+...+.+.|++++|+++|++..+.|- |+. +..+-..+...|+. ++|...+....+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A--~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEA--QVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTG--GGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHH--HHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56677889999999999999988763 333 22333334456666 8888888888755 55556666665555
Q ss_pred cC-----CHHHHHHHHHhcCCC-ChHhHHHHHHHHHHcCCch---HHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchH
Q 003150 498 CG-----RLDLAYKIFKRMSEK-DVVCWNSMITRYSQNGKPE---EAIDLFRQMAIEGVKHDCMSLSAALSACANLHALH 568 (844)
Q Consensus 498 ~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 568 (844)
.+ ++++|...|++..++ +...+..|...|...+..+ ++.+.+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 54 778899999887654 5567888888888776544 45555555555443 334445555555556444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChHHHHHHHHHHHhc----CChHHHHH
Q 003150 569 YGKEIHSLMIKDSCRSDNIAESVLIDLYAKCG---NLDFARTVFDMMQR---KQEAAWNSMIAAYGCH----GHLKDSLA 638 (844)
Q Consensus 569 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 638 (844)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44443333333322334447888999999999 89999999987654 3444556777777554 69999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--hhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC-----CHHHHHHH
Q 003150 639 LFHEMLNNKIKPDHVTFLAIISA-C--GHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAG-----RLNKALET 710 (844)
Q Consensus 639 l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~ 710 (844)
+|++.. .| +...+..+... + ...|+.++|.++|+...+. | ++..+..|..+|. .| ++++|+++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 33 23344444444 3 4589999999999998763 3 6677888888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh----cCCcchHHHHHHHHHH
Q 003150 711 INSMPFAPDAGVWGTLLGACRV----HGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD----AGQWGNVNKIRRLMKE 782 (844)
Q Consensus 711 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~ 782 (844)
+++.- ..++..+..|...+.. ..|.++|...++++.+ +.++.+...|+.+|.. ..+.++|...++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99987 5567777777766554 2399999999999876 4668889999999986 4578889999888877
Q ss_pred cCC
Q 003150 783 RGV 785 (844)
Q Consensus 783 ~~~ 785 (844)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=5e-11 Score=120.94 Aligned_cols=225 Identities=12% Similarity=0.040 Sum_probs=168.8
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHhcCCC-ChHhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCChHHHHHHH
Q 003150 484 KCHVGSAITDMYAKCGRLDLAYKIFKRMSEK-DVVCWNSMITRYSQ----NGKPEEAIDLFRQMAIEGVKHDCMSLSAAL 558 (844)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 558 (844)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|++.|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a----- 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG----- 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH-----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH-----
Confidence 4456677888899999999999999987765 56778888889999 999999999999887764 3333
Q ss_pred HHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----
Q 003150 559 SACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK----CGNLDFARTVFDMMQR-KQEAAWNSMIAAYGC---- 629 (844)
Q Consensus 559 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 629 (844)
+..+..+|.. .|++++|.+.|++..+ .+..++..+...|..
T Consensus 77 ------------------------------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 77 ------------------------------CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ------------------------------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ------------------------------HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 3344455555 6666666666665543 356667777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----c
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH----AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR----A 701 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 701 (844)
.|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. .++..+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 788888888888888754 44556666666666 78888888888887663 245667778888888 8
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCC
Q 003150 702 GRLNKALETINSM-PFAPDAGVWGTLLGACRV----HGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 702 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
|++++|++.+++. ... +...+..+...+.. .++.++|...+++++++.|+++
T Consensus 200 ~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 200 KNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred ccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8889998888877 322 36677777777887 8899999999999999888654
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.7e-12 Score=142.86 Aligned_cols=205 Identities=9% Similarity=0.014 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 003150 567 LHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNL-DFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHE 642 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 642 (844)
++.+.+.+....+. .+.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443332 234667778888889999999 999999987653 4578999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhh---------CCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhc--------CCH
Q 003150 643 MLNNKIKPDHVTFLAIISACGHA---------GQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRA--------GRL 704 (844)
Q Consensus 643 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~ 704 (844)
..+ +.|+...+..+...+... |++++|++.|+++.+. .| +...|..++.+|... |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 578888888888899999 9999999999999773 45 688899999999999 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 003150 705 NKALETINSM-PFAP----DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 705 ~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 777 (844)
++|++.+++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 4456 57899999999999999999999999999999999999999999999999999998744
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=1.7e-11 Score=132.55 Aligned_cols=285 Identities=12% Similarity=0.041 Sum_probs=152.9
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hHhHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-hHHH
Q 003150 487 VGSAITDMYAKCGRLDLAYKIFKRMSE--K-D----VVCWNSMITRYSQNGKPEEAIDLFRQMAIE----GVKHD-CMSL 554 (844)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~ 554 (844)
.+..+...+.+.|++++|...|++..+ | + ...|..+...|...|++++|+..+++.... +-.|. ..++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344556667777788888777776543 2 2 245667777777777777777777775432 21221 2344
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 003150 555 SAALSACANLHALHYGKEIHSLMIKD----SCR-SDNIAESVLIDLYAKCGN--------------------LDFARTVF 609 (844)
Q Consensus 555 ~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~--------------------~~~A~~~~ 609 (844)
..+...+...|++++|...+....+. +-. .....+..+...|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55555566666666666666655532 111 112345556666666666 66666655
Q ss_pred HhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhhhCCHHHHHHHH
Q 003150 610 DMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDH----VTFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 610 ~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~----~t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
++... ++ ..+|..+...|...|++++|+..+++..+.. -.++. .++..+...+...|++++|..++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 54321 11 2345555666666666666666666655410 01111 14455555566666666666666
Q ss_pred HHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 003150 676 HCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKALETINSM----PFAPD----AGVWGTLLGACRVHGNVELAEVAS 743 (844)
Q Consensus 676 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~ 743 (844)
+...+...-.++ ...+..++.+|.+.|++++|.+.+++. +..++ ..++..+...+...|+++.|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 655432111111 344555566666666666666665554 11111 244555555566666666666666
Q ss_pred HHhhcCCCCCC------chHHHHHHHHHhcCCcc
Q 003150 744 SHLFDLDPQNS------GYYVLLSNIHADAGQWG 771 (844)
Q Consensus 744 ~~~~~~~p~~~------~~~~~l~~~y~~~g~~~ 771 (844)
++++++.+... .++..++.+|...|+..
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 66666655552 23444444444444444
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=4.9e-12 Score=137.13 Aligned_cols=260 Identities=12% Similarity=0.029 Sum_probs=172.1
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHhchhchHHHHHHHHHHHHh----C-CCCchhHHH
Q 003150 521 SMITRYSQNGKPEEAIDLFRQMAIEGVKHDC-----MSLSAALSACANLHALHYGKEIHSLMIKD----S-CRSDNIAES 590 (844)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~ 590 (844)
.+...+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...++...+. + .+.....+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445556666666666666665542 221 24445555555666666666666555432 1 122345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 003150 591 VLIDLYAKCGNLDFARTVFDMMQR-----K----QEAAWNSMIAAYGCHGH-----------------LKDSLALFHEML 644 (844)
Q Consensus 591 ~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 644 (844)
.+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 677777788888888777776542 1 23467777788888888 888888877765
Q ss_pred HC----CCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 003150 645 NN----KIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKALETINSM- 714 (844)
Q Consensus 645 ~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 714 (844)
+. +-.|.. .++..+...+...|++++|+.++++..+...-.++ ...+..++.+|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 41 111222 36666777788888888888888887653211112 236778888888889988888888776
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC------CchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 715 ---PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN------SGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 715 ---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
+-..+ ..+|..+...+...|+++.|...+++++++.|+. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11112 4667778888888899999999999888875543 3478888999999999999988887765
Q ss_pred H
Q 003150 782 E 782 (844)
Q Consensus 782 ~ 782 (844)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=5e-11 Score=120.79 Aligned_cols=239 Identities=12% Similarity=0.052 Sum_probs=185.4
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hHhHHHHHHH
Q 003150 452 TLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSE--KD----VVCWNSMITR 525 (844)
Q Consensus 452 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~ 525 (844)
.+......+...|+++.|...+..+++... .+...+..+...|...|++++|...|++..+ ++ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 444556678889999999999999988643 3455888899999999999999999998765 22 2348889999
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003150 526 YSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFA 605 (844)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 605 (844)
|...|++++|++.|++..+.. +.+...+..+...|...|++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999987732 22345677788899999999999
Q ss_pred HHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCC---HHHHHHHHHHh
Q 003150 606 RTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQ---VEAGIHYFHCM 678 (844)
Q Consensus 606 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~---~~~a~~~~~~~ 678 (844)
.+.|++..+ .+...|..+...+...+++++|+..|++..+ ..|+. ..+..+...+...|+ .++|...++.+
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999998875 3567788777344445699999999999998 56664 567777777888888 88899999888
Q ss_pred HhhcCCCCCc------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 003150 679 TEEYGIPARM------EHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGA 729 (844)
Q Consensus 679 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 729 (844)
.+...-.|+. ..|..++..|.+.|++++|.+.+++. ...|+ ...+..+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 7754334442 57888999999999999999999988 45565 4555544433
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=7.7e-12 Score=132.19 Aligned_cols=222 Identities=9% Similarity=0.042 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 003150 552 MSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGN-LDFARTVFDMMQR---KQEAAWNSMIAAY 627 (844)
Q Consensus 552 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 627 (844)
..+..+...+...|++++|...++.+++.. +.+...|+.+..+|.+.|+ +++|+..|++..+ .+...|+.+..+|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666667788899999999999999875 3467788899999999997 9999999998774 4788999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHh-cCCH
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGR-AGRL 704 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 704 (844)
...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..|+.+.+ +.| +...|..+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 56765 5888888899999999999999999987 355 68889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcC-------
Q 003150 705 NKA-----LETINSM-PFAPD-AGVWGTLLGACRVHG--NVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG------- 768 (844)
Q Consensus 705 ~~A-----~~~~~~~-~~~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 768 (844)
++| ++.+++. .+.|+ ...|..+...+...| +.+.|...++++ +.+|+++.++..|+.+|...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4677666 55665 689999998888888 689999999998 999999999999999999975
Q ss_pred --CcchHHHHHHHH
Q 003150 769 --QWGNVNKIRRLM 780 (844)
Q Consensus 769 --~~~~a~~~~~~m 780 (844)
..++|.++++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 258899999887
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.9e-11 Score=128.11 Aligned_cols=259 Identities=15% Similarity=0.064 Sum_probs=172.9
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhchhchHHHHHHHHHHHHh----CCC-CchhHHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGVKHD-----CMSLSAALSACANLHALHYGKEIHSLMIKD----SCR-SDNIAESVL 592 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l 592 (844)
...+...|++++|+..|++..+.. |+ ...+..+...+...|+++.|...+....+. +.. .....+..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455555555555555554432 22 133444444555555555555555544322 111 124456667
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 003150 593 IDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGH--------------------LKDSLALFHEM 643 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 643 (844)
...|...|++++|.+.|++..+ ++ ..++..+...|...|+ +++|+..+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7778888888888887776542 22 3367777888888888 88888888776
Q ss_pred HHC----CCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 644 LNN----KIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 644 ~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
.+. +-.|.. .++..+...+...|++++|..+++...+...-.++ ...+..++..+.+.|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 541 112222 35666777888899999999998887653211122 347788889999999999999888876
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC------CchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 715 ----PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN------SGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 715 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
+..++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11222 4677778888999999999999999998876544 337888999999999999999998877
Q ss_pred HHc
Q 003150 781 KER 783 (844)
Q Consensus 781 ~~~ 783 (844)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.36 E-value=3.8e-11 Score=116.88 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHH
Q 003150 600 GNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFH 676 (844)
Q Consensus 600 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 676 (844)
|++++|...|++..+ .+...|..+...|...|++++|+..|++.++.. .+...+..+..++...|++++|+..|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444332 233444444455555555555555555554433 334444444445555555555555555
Q ss_pred HhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 677 CMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINS 713 (844)
Q Consensus 677 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (844)
.+.+. .| ++..+..++.++.+.|++++|.+.+++
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 54431 22 344444455555555555555544443
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=1.9e-11 Score=124.13 Aligned_cols=216 Identities=10% Similarity=-0.012 Sum_probs=178.7
Q ss_pred hchhchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHH
Q 003150 562 ANLHALHYGKEIHSLMIKDSC---RSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKD 635 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 635 (844)
...|++++|...++.+.+... +.+...+..+...|...|++++|.+.|++..+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456899999999999997642 22567888899999999999999999998764 468899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 636 SLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 636 A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
|+..|++..+ ..| +..++..+...+...|++++|..+|+.+.+ +.|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999998 455 457888888999999999999999999977 3565444555556667889999999999776
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC----CchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 715 -P-FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN----SGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 715 -~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
. ..++...|. ++..+...++.+.|...++++++..|+. +..+..++.+|...|++++|...+++..+.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 233444444 6777788889999999999999887743 788999999999999999999999988654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=5.6e-12 Score=136.31 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=166.4
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC---ccchHHHHHHHHhcCCHHHHHHHHHhcCC-----C----Ch
Q 003150 449 NTVTLSSILPACADLAALKLGKELHCYILKNGLDGK---CHVGSAITDMYAKCGRLDLAYKIFKRMSE-----K----DV 516 (844)
Q Consensus 449 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~----~~ 516 (844)
....+...-..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++... . ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334445555566777778888877777777632211 24566677777777787777777765432 1 24
Q ss_pred HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHhchhc--------------------hHHHH
Q 003150 517 VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVK-HD----CMSLSAALSACANLHA--------------------LHYGK 571 (844)
Q Consensus 517 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~~~--------------------~~~a~ 571 (844)
.+|..+...|...|++++|+..+++....... ++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666777777778888887777776542110 11 3355666666777777 77777
Q ss_pred HHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHH
Q 003150 572 EIHSLMIKD----SCR-SDNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSL 637 (844)
Q Consensus 572 ~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~ 637 (844)
..+....+. +.. .....+..+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777665532 111 1234566677777777888777777776542 12 236677777777778888887
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHH
Q 003150 638 ALFHEMLNN----KIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKAL 708 (844)
Q Consensus 638 ~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 708 (844)
..+++..+. +-.+. ..++..+...+...|++++|..+++...+...-.++ ...+..+..+|.+.|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777776642 11111 235666666777778888887777776553211111 456667777777778877777
Q ss_pred HHHHhC
Q 003150 709 ETINSM 714 (844)
Q Consensus 709 ~~~~~~ 714 (844)
+.+++.
T Consensus 328 ~~~~~a 333 (406)
T 3sf4_A 328 HFAEKH 333 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=1.1e-11 Score=141.50 Aligned_cols=161 Identities=14% Similarity=0.258 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACM 694 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 694 (844)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45788888888888888999999988888 67775 5788888889999999999999988876 356 47888899
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 695 VDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
+.+|.+.|++++|++.+++. .+.|+ ...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999998887 55665 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003150 773 VNKIRRLMKE 782 (844)
Q Consensus 773 a~~~~~~m~~ 782 (844)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987776543
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=3.3e-09 Score=119.70 Aligned_cols=219 Identities=8% Similarity=-0.051 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003150 534 EAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGK-EIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMM 612 (844)
Q Consensus 534 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 612 (844)
.+..+|++....- .-+...|.....-+...|+.+.|. .+++..+.. ++.+...+-.++....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677766542 234556666666667778888886 999988864 3556677788889999999999999999876
Q ss_pred CC-------------C------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhh-h
Q 003150 613 QR-------------K------------QEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGH-A 665 (844)
Q Consensus 613 ~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~-~ 665 (844)
.. | ....|...+....+.|..+.|..+|.+..+. +. +....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhC
Confidence 53 2 1236888888888999999999999999885 21 122333322222223 3
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 003150 666 GQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP----DAGVWGTLLGACRVHGNVELAE 740 (844)
Q Consensus 666 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~ 740 (844)
++.+.|.++|+...+.+ +.++..+...++.+...|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55899999999998853 335666778899999999999999999997 3334 2378999999999999999999
Q ss_pred HHHHHhhcCCCCCCchH
Q 003150 741 VASSHLFDLDPQNSGYY 757 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~ 757 (844)
.+.+++.+..|+++..-
T Consensus 562 ~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHhCCCCcHHH
Confidence 99999999999986543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=2.1e-11 Score=115.43 Aligned_cols=167 Identities=12% Similarity=0.092 Sum_probs=144.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIIS 660 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 660 (844)
+..+|..+...|.+.|++++|++.|++..+ .+..+|..+...|...|++++|+..+.+... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 567788899999999999999999998764 4678999999999999999999999999988 45554 56666777
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 738 (844)
.+...++++.|...+....+. .+.+...+..++.+|.+.|++++|++.+++. ...|+ +.+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999998763 2336788999999999999999999999988 44554 6889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCc
Q 003150 739 AEVASSHLFDLDPQNSG 755 (844)
Q Consensus 739 a~~~~~~~~~~~p~~~~ 755 (844)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998743
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=5e-10 Score=115.67 Aligned_cols=186 Identities=9% Similarity=0.101 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 003150 568 HYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-QEA-AWNSMIAAYGCHGHLKDSLALFHEM 643 (844)
Q Consensus 568 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 643 (844)
++|..+++..++.-.+.+...|..++..+.+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666531233455777778888888888888888887654 2 333 7888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHh-hhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC
Q 003150 644 LNNKIKPDHVTFLAIISACG-HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-P---FAP 718 (844)
Q Consensus 644 ~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p 718 (844)
.+.+ +++...|........ ..|++++|..+|+...+.. +.++..|..+++.+.+.|++++|..++++. . +.|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 8742 223334443333222 3588888888888887632 235677788888888888888888888877 2 344
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 719 D--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 719 ~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
+ ...|..++.....+|+.+.|..+++++++..|+++..
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 3 4678888888888888888888888888888876533
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.26 E-value=4.2e-11 Score=129.71 Aligned_cols=199 Identities=15% Similarity=0.032 Sum_probs=129.6
Q ss_pred HHHHHHHHhchhchHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHh
Q 003150 554 LSAALSACANLHALHYGKEIHSLMIKD----S-CRSDNIAESVLIDLYAKCGN-----------------LDFARTVFDM 611 (844)
Q Consensus 554 ~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~ 611 (844)
+..+...+...|++++|...+..+.+. + .......+..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 333334444444444444444443322 1 11123345556666666666 6666666655
Q ss_pred cCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhhhCCHHHHHHHHHH
Q 003150 612 MQR-----K----QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKI-KPD----HVTFLAIISACGHAGQVEAGIHYFHC 677 (844)
Q Consensus 612 ~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~ 677 (844)
..+ . ...+|..+...|...|++++|+..|++..+..- .++ ..++..+...+...|++++|..+|+.
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 432 1 234677778888888888888888888766210 012 12667777788889999999998888
Q ss_pred hHhhcCCCC----CchHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003150 678 MTEEYGIPA----RMEHYACMVDLFGRAGRLNKALETINSM-PF---APD----AGVWGTLLGACRVHGNVELAEVASSH 745 (844)
Q Consensus 678 ~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 745 (844)
..+...-.. ....+..++.+|.+.|++++|.+.+++. .. .++ ..++..+...+...|+.+.|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 765321111 1467788899999999999999888876 11 122 35777888889999999999999999
Q ss_pred hhcCCCC
Q 003150 746 LFDLDPQ 752 (844)
Q Consensus 746 ~~~~~p~ 752 (844)
++++.+.
T Consensus 369 al~~~~~ 375 (411)
T 4a1s_A 369 HLQLAXX 375 (411)
T ss_dssp HHHHCCH
T ss_pred HHHHHhh
Confidence 9888764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=1.2e-10 Score=121.98 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhhhCC
Q 003150 602 LDFARTVFDMMQR-----K----QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKI-KPD----HVTFLAIISACGHAGQ 667 (844)
Q Consensus 602 ~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~ 667 (844)
+++|.+.+++... + ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 6666666554321 1 134677777888888888888888888765210 111 1266777778888899
Q ss_pred HHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 003150 668 VEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKALETINSM----PFAPD----AGVWGTLLGACRVHGN 735 (844)
Q Consensus 668 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~ 735 (844)
+++|..+++...+...-.++ ...+..++.++...|++++|.+.+++. +..++ ..+|..+...+...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999988887653211122 556778889999999999999888776 11122 3577888888999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q 003150 736 VELAEVASSHLFDLDPQ 752 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~ 752 (844)
++.|...+++++++.++
T Consensus 319 ~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=3.9e-08 Score=110.94 Aligned_cols=434 Identities=10% Similarity=0.027 Sum_probs=263.0
Q ss_pred hhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCC---HHHHHHH
Q 003150 330 MNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRD---VKMACKV 406 (844)
Q Consensus 330 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 406 (844)
..+.+..|++-...+. -|..+|..++..+.+.+.++.+..+++.+++. ++.....|...++.-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4445555555555432 36667777777777777777788888777766 45666777777777777777 7778877
Q ss_pred HHhCCC-----CChhhHHHHHHHHHhcCCc----hH----HHHHHHHHHH-cCC-CCCh-hhHHHHHHHHh---------
Q 003150 407 FKENTA-----ADVVMFTAMISGYVLNGIS----HE----ALEKFRWLIQ-EKI-IPNT-VTLSSILPACA--------- 461 (844)
Q Consensus 407 ~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~--------- 461 (844)
|++... +++..|...+.-..+.+.. ++ ..++|+..+. -|. .|+. ..|...+.-..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 777322 5666777766655444443 22 2345554443 244 4443 34444443221
Q ss_pred cccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHH
Q 003150 462 DLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQ 541 (844)
Q Consensus 462 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 541 (844)
..+.++.+..+|..++......-..+|......-...+. ..+.+++.+ ...+++.|...+.+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e 267 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQD 267 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHH
Confidence 123345555555555532111111111111110000000 001111111 01122333344433
Q ss_pred HHH--CCCC---------------C--C---h---HHHHHHHHHHhchh-------chHHHHHHHHHHHHhCCCCchhHH
Q 003150 542 MAI--EGVK---------------H--D---C---MSLSAALSACANLH-------ALHYGKEIHSLMIKDSCRSDNIAE 589 (844)
Q Consensus 542 m~~--~g~~---------------p--~---~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~ 589 (844)
+.. .++. | + . ..|...+.---..+ ..+....+++.++.. ++....+|
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW 346 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIW 346 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHH
Confidence 221 1110 1 0 0 11222222111111 123455667777765 34477788
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC-----
Q 003150 590 SVLIDLYAKCGNLDFAR-TVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK---------IKPD----- 651 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~pd----- 651 (844)
-..+..+.+.|+.++|. ++|++... ++...|-..+...-+.|++++|.++|+++++.. -.|+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 88888888999999996 99987654 356678888899999999999999999998731 0142
Q ss_pred -------HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHH
Q 003150 652 -------HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAG-RLNKALETINSM--PFAPDAG 721 (844)
Q Consensus 652 -------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~ 721 (844)
...|...+....+.|..+.|+.+|..+.+.. -.+....|...+.+..+.| +.+.|.++|+.. .+..+..
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 2357777778888899999999999998731 1123445555555555655 489999999887 3334567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC---CCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLDPQ---NSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
.|...+......|+.+.|..++++++...|+ ....+..+...-...|+.+.+.++.+++.+.-.
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888899999999999999998884 456777888888889999999999999976543
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=6e-10 Score=115.10 Aligned_cols=212 Identities=8% Similarity=0.007 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChHHHHHHHHHHHhc
Q 003150 569 YGKEIHSLMIKDSCRSDNIAESVLIDLYA-------KCGNL-------DFARTVFDMMQR---K-QEAAWNSMIAAYGCH 630 (844)
Q Consensus 569 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 630 (844)
+|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3333444444321 234445555555554 45775 899999997654 3 567899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH-hcCCHHHH
Q 003150 631 GHLKDSLALFHEMLNNKIKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFG-RAGRLNKA 707 (844)
Q Consensus 631 g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 707 (844)
|++++|..+|++.++ +.|+.. .|..+...+.+.|++++|+.+|+++.+. .+++...|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 677643 7888899999999999999999999762 2334555655444433 36999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC---CCC-CCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 708 LETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDL---DPQ-NSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 708 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
.+++++. ...| +...|..++..+...|+.+.|..+++++++. +|+ ....|..++..+...|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988 3334 4789999999999999999999999999995 554 67789999999999999999999999887
Q ss_pred HcCC
Q 003150 782 ERGV 785 (844)
Q Consensus 782 ~~~~ 785 (844)
+...
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 6543
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=3.5e-10 Score=111.12 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=127.6
Q ss_pred ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 003150 550 DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAA 626 (844)
Q Consensus 550 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 626 (844)
|...+...-..+...|++++|...++..++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 34556666666677777777777777777665434555555577777777777777777776543 234566667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC---chHHHHHH
Q 003150 627 YGCHGHLKDSLALFHEMLNNKIKPDHV--------TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR---MEHYACMV 695 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 695 (844)
|...|++++|+..|++..+ ..|+.. .|..+...+...|++++|++.|+.+.+ +.|+ +..|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 7777777777777777766 344432 344455566667777777777776644 3443 45566666
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 696 DLFGRAGRL--NKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 696 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
.+|...|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.+...|+.+..
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 666554432 2222111 11222232222 233456699999999999999999988888877644
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=1.5e-10 Score=124.11 Aligned_cols=222 Identities=9% Similarity=0.003 Sum_probs=144.0
Q ss_pred HHhchhchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hHHHHHHH
Q 003150 560 ACANLHALHYGKEIHSLMIKD----SCRS-DNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ-----EAAWNSMI 624 (844)
Q Consensus 560 a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 624 (844)
.+...|++++|...+....+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344556666666666665542 1111 234566677777777777777777665442 11 34677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhc---CCCC-CchHHHHHH
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKI-KPDH----VTFLAIISACGHAGQVEAGIHYFHCMTEEY---GIPA-RMEHYACMV 695 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~ 695 (844)
..|...|++++|+..|++..+..- .++. .++..+...+...|++++|+++|+...+.. +..| ....+..++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 888888888888888887765210 1111 366677777888888888888888775521 2213 356677888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-----CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 696 DLFGRAGRLNKALETINSM-PF-----APDA-GVWGTLLGACRVHGN---VELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~-~~-----~p~~-~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
.+|.+.|++++|.+.+++. .+ .|.. ..+..+...+...|+ .+.|...+++. ...|....++..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 8888888888888888776 11 1222 234555556666777 67777777766 444555667788888899
Q ss_pred hcCCcchHHHHHHHHHH
Q 003150 766 DAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 766 ~~g~~~~a~~~~~~m~~ 782 (844)
..|++++|.+.+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999998888876644
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=126.91 Aligned_cols=237 Identities=13% Similarity=0.127 Sum_probs=119.9
Q ss_pred ChHhHHHHHHHHHHcCCchHHHHHHHHHHHC-------CCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHh------C
Q 003150 515 DVVCWNSMITRYSQNGKPEEAIDLFRQMAIE-------GVKHDCMSLSAALSACANLHALHYGKEIHSLMIKD------S 581 (844)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g 581 (844)
+..+|..+...|...|++++|+..|+++.+. ........+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888888899999999999999888762 11122333444444555555555555555544432 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-H
Q 003150 582 C-RSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN------KIKPDH-V 653 (844)
Q Consensus 582 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~ 653 (844)
- +... .+|..+...|...|++++|+..|++..+. +-.|+. .
T Consensus 106 ~~~~~~-------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVA-------------------------------ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHH-------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHH-------------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 1122 34444555555555555555555555442 112222 2
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhc-----CCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CC
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEY-----GIPA-RMEHYACMVDLFGRAGRLNKALETINSM-P---------FA 717 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~ 717 (844)
++..+...+...|++++|+++|+.+.+.. +..| ....+..++.+|.+.|++++|.+.++++ . ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44445555556666666666665554421 1122 2344555566666666666666555554 0 11
Q ss_pred CCH-HH------HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 718 PDA-GV------WGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 718 p~~-~~------~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|.. .. +..+...+...+.+..+...++++....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 11 112222223344455555666666667777777788888888888888888887776543
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=2.5e-10 Score=107.71 Aligned_cols=159 Identities=12% Similarity=0.052 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh
Q 003150 621 NSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR 700 (844)
Q Consensus 621 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 700 (844)
..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444443321 112234444444455555555555555554432 12234445555555555
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 701 AGRLNKALETINSM-PF-APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 701 ~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
.|++++|.+.++++ .. ..+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555544 11 22345566666666666666777777777666667666667777777777777777776666
Q ss_pred HHHH
Q 003150 779 LMKE 782 (844)
Q Consensus 779 ~m~~ 782 (844)
+..+
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=3.4e-10 Score=121.25 Aligned_cols=230 Identities=9% Similarity=0.035 Sum_probs=164.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHhchhchHHHHHHHHHHHHh--CC----CCchhHHH
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIE----GVKH-DCMSLSAALSACANLHALHYGKEIHSLMIKD--SC----RSDNIAES 590 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~----~~~~~~~~ 590 (844)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+. .. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666666543 1111 1234555555666666676666666665543 11 11234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHH
Q 003150 591 VLIDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNN----KIKPDH-VTFL 656 (844)
Q Consensus 591 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~ 656 (844)
.+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|+..|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999998887653 22 247888999999999999999999998872 232444 5788
Q ss_pred HHHHHHhhhCCHHHHHHHHHHhHhhcCC--CC-CchHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 003150 657 AIISACGHAGQVEAGIHYFHCMTEEYGI--PA-RMEHYACMVDLFGRAGR---LNKALETINSMPFAPDA-GVWGTLLGA 729 (844)
Q Consensus 657 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 729 (844)
.+...+...|++++|..+++...+...- .| ....+..+..++...|+ +++|++++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888999999999999999988653211 12 23346778899999999 99999999999655553 677788888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCC
Q 003150 730 CRVHGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p 751 (844)
+...|+++.|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.1e-10 Score=120.75 Aligned_cols=238 Identities=12% Similarity=0.066 Sum_probs=148.1
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChHhHHHHHHHHHHcCCchHHHHHHHHHHHC------CC
Q 003150 485 CHVGSAITDMYAKCGRLDLAYKIFKRMSE--------K---DVVCWNSMITRYSQNGKPEEAIDLFRQMAIE------GV 547 (844)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 547 (844)
..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45677888999999999999999998754 1 3467888999999999999999999998764 22
Q ss_pred CC-ChHHHHHHHHHHhchhchHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHH
Q 003150 548 KH-DCMSLSAALSACANLHALHYGKEIHSLMIKD------SCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAW 620 (844)
Q Consensus 548 ~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 620 (844)
.| ...++..+...+...|++++|...+..+.+. +-.|. ....|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 2455666666777777777777777766543 11111 12344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhc------CCCCC
Q 003150 621 NSMIAAYGCHGHLKDSLALFHEMLNN------KIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEY------GIPAR 687 (844)
Q Consensus 621 ~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~ 687 (844)
..+...|...|++++|+.+|+++.+. +-.|+. .++..+...+...|++++|.++|+.+.+.. ...|.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 55555566666666666666665542 113333 355666667777777777777777765421 12221
Q ss_pred -chH------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 688 -MEH------YACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 688 -~~~------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
... +..+...+...+.+.+|...++.. ...|+ ..+|..+...+...|+++.|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 222333344455555666666665 23343 478888999999999999999999999998775
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=8.9e-10 Score=103.84 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISA 661 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a 661 (844)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...++++.+. .| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 34566778889999999999999998875 36788999999999999999999999999884 44 45678888889
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELA 739 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 739 (844)
+...|++++|.++++.+.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999774 3446788899999999999999999999887 3334 468899999999999999999
Q ss_pred HHHHHHhhcCCCCCCchHH
Q 003150 740 EVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 740 ~~~~~~~~~~~p~~~~~~~ 758 (844)
...++++++++|+++....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 164 LPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHcCCCchhhHh
Confidence 9999999999998876543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1e-08 Score=109.14 Aligned_cols=258 Identities=13% Similarity=0.035 Sum_probs=147.6
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCChH----HHHHHHHHHhchhchHHHHHHHHHHHHh----CCC-CchhHHHHHHHH
Q 003150 525 RYSQNGKPEEAIDLFRQMAIEGVKHDCM----SLSAALSACANLHALHYGKEIHSLMIKD----SCR-SDNIAESVLIDL 595 (844)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~ 595 (844)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+. |.. ........+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555544432111111 2233333444555555555555554432 110 011224456666
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-C-HHHHHHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQR-------K----QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIK--P-D-HVTFLAIIS 660 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d-~~t~~~ll~ 660 (844)
|...|++++|...+++... + ....+..+...|...|++++|...+++..+..-. | . ..++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777665432 1 1234555667777788888888888777652111 1 1 235566666
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCCCchHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA-----CMVDLFGRAGRLNKALETINSM-PFAPD-----AGVWGTLLGA 729 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~ 729 (844)
.+...|++++|..+++.......-......+. ..+..+...|++++|.+.+++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77778888888888877765321111111121 2334466788888888888777 22221 2345666677
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCC------CchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQN------SGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
+...|+.+.|...++++++..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888888888888777654322 13666778888888888888887776543
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=2.7e-10 Score=125.19 Aligned_cols=178 Identities=9% Similarity=0.026 Sum_probs=156.4
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHH
Q 003150 601 NLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHL-KDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYF 675 (844)
Q Consensus 601 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 675 (844)
++++|.+.++.... .+...|..+...|...|++ ++|++.|++.++ ..|+ ...|..+..++...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665543 4678899999999999999 999999999998 5666 468888999999999999999999
Q ss_pred HHhHhhcCCCCCchHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CCH
Q 003150 676 HCMTEEYGIPARMEHYACMVDLFGRA---------GRLNKALETINSM-PFAPD-AGVWGTLLGACRVH--------GNV 736 (844)
Q Consensus 676 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--------g~~ 736 (844)
+.+.+ +.|+...+..+..+|... |++++|++.+++. ...|+ ...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99966 568888899999999999 9999999999998 44555 68899999999988 999
Q ss_pred HHHHHHHHHhhcCCC---CCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 737 ELAEVASSHLFDLDP---QNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
++|+..++++++++| +++.+|..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999887654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=8.5e-10 Score=108.35 Aligned_cols=186 Identities=10% Similarity=-0.041 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR----KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIIS 660 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 660 (844)
+..+..+...|.+.|++++|.+.|+...+ ++...|..+..+|...|++++|+..|++..+ ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34455555555556666666655554432 3444444455555555566666665555555 34443 24444555
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCC-Cc-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPA-RM-------EHYACMVDLFGRAGRLNKALETINSM-PFAPD---AGVWGTLLG 728 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~ 728 (844)
.+...|++++|+..|+...+. .| ++ ..|..+...+.+.|++++|++.+++. ...|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 555555555555555555442 22 22 33444555555555555555555554 33443 234444444
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 729 ACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 729 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.+.. .+...++++..+.+.++..|. .......+.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4332 223334444444444433322 22233344458888888877653
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=2.2e-09 Score=114.52 Aligned_cols=220 Identities=8% Similarity=-0.026 Sum_probs=142.7
Q ss_pred HhchhchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hHHHHHHHH
Q 003150 561 CANLHALHYGKEIHSLMIKDS--CR---SDNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ-----EAAWNSMIA 625 (844)
Q Consensus 561 ~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 625 (844)
+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345666666766666665431 11 1234566677777788888777777765432 11 346777788
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhc---CCCCCchHHHHHHHH
Q 003150 626 AYGCHGHLKDSLALFHEMLNN----KIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEY---GIPARMEHYACMVDL 697 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~ 697 (844)
.|...|++++|++.|++..+. |-.+. ..++..+...+...|++++|+++|+...+.. +.+.....+..++.+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888877652 11111 1356667777888888888888888776521 112235667778888
Q ss_pred HHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc
Q 003150 698 FGRAGRLNKALETINSM----PF--APDA-GVWGTLLGACRVHGN---VELAEVASSHLFDLDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 767 (844)
+.+.|++++|.+.+++. +. .|.. ..+..+...+...|+ .+.|...+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 2322 334444444555667 66676666652 33444556777888899999
Q ss_pred CCcchHHHHHHHHH
Q 003150 768 GQWGNVNKIRRLMK 781 (844)
Q Consensus 768 g~~~~a~~~~~~m~ 781 (844)
|++++|.+.+++..
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888877654
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=3.6e-09 Score=108.18 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=123.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHH
Q 003150 594 DLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-------HVTFLA 657 (844)
Q Consensus 594 ~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~~ 657 (844)
..|...|++++|.+.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 345566676666666664432 11 34677778888888888888888887765 2221 246777
Q ss_pred HHHHHhhh-CCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--------HHH
Q 003150 658 IISACGHA-GQVEAGIHYFHCMTEEYGIPAR----MEHYACMVDLFGRAGRLNKALETINSM-PFAPDA--------GVW 723 (844)
Q Consensus 658 ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~ 723 (844)
+...+... |++++|+..|++..+...-..+ ..++..++..|.+.|++++|++.+++. ...|+. ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 77888886 9999999999988763211111 356788899999999999999999887 223321 156
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch-----HHHHHHHHH--hcCCcchHHHHHH
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQNSGY-----YVLLSNIHA--DAGQWGNVNKIRR 778 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 778 (844)
..+...+...|+++.|+..++++++++|+.... +..|+..|. ..+++++|.+.++
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 677777888999999999999999999987653 334555554 3466777777664
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=6.4e-10 Score=127.13 Aligned_cols=164 Identities=12% Similarity=0.221 Sum_probs=144.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003150 584 SDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAII 659 (844)
Q Consensus 584 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 659 (844)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|+..|++.++ +.|+. ..|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3567788899999999999999999998764 4678999999999999999999999999998 67775 5888899
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNV 736 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 736 (844)
.++...|++++|++.|++..+ +.| +...|..++.+|.+.|++++|++.+++. .+.|+ ...|..|...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999876 466 5888999999999999999999999987 66676 68899999999999999
Q ss_pred HHHHHHHHHhhcCCCC
Q 003150 737 ELAEVASSHLFDLDPQ 752 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p~ 752 (844)
+.|+..+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999887654
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=4.3e-08 Score=104.50 Aligned_cols=225 Identities=10% Similarity=0.034 Sum_probs=163.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhchhchHHHHHHHHHHHHh--CC---C-CchhHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIEGV-KHD----CMSLSAALSACANLHALHYGKEIHSLMIKD--SC---R-SDNIAESV 591 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~---~-~~~~~~~~ 591 (844)
...+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+. .. . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777654311 122 234555666667777777777777766543 11 1 12456677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCC-HHHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLN-----NKIKPD-HVTFL 656 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd-~~t~~ 656 (844)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+ . .|+ ..++.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 265 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVLF 265 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHHH
Confidence 88889999999999988876553 22 34788889999999999999999999887 3 233 45777
Q ss_pred HHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 003150 657 AIISACGHAGQVEAGIHYFHCMTEEYGIPAR---MEHYACMVDLFGRAGR---LNKALETINSMPFAPDA-GVWGTLLGA 729 (844)
Q Consensus 657 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 729 (844)
.+...+...|++++|..+++...+...-.++ ...+..+...+...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999998774322222 3456777788888888 99999999997655553 567778888
Q ss_pred HHhcCCHHHHHHHHHHhhcC
Q 003150 730 CRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~ 749 (844)
+...|+.+.|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=7.3e-09 Score=105.88 Aligned_cols=215 Identities=11% Similarity=-0.032 Sum_probs=141.8
Q ss_pred CHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHH
Q 003150 500 RLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIK 579 (844)
Q Consensus 500 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 579 (844)
++++|...|++. ...|...|++++|++.|++...... +
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~ 69 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK-------------------------------K 69 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH-------------------------------H
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------H
Confidence 477777766554 6677778888888887776654210 0
Q ss_pred hCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCC
Q 003150 580 DSCRS-DNIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCH-GHLKDSLALFHEMLNNKI 648 (844)
Q Consensus 580 ~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~ 648 (844)
.|-++ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+ +
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~ 147 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--W 147 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--H
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--H
Confidence 01001 123445555666666666666666554432 11 34677888888886 999999999998877 3
Q ss_pred CCC-------HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 003150 649 KPD-------HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARM-----EHYACMVDLFGRAGRLNKALETINSM-P 715 (844)
Q Consensus 649 ~pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 715 (844)
.|+ ..++..+...+...|++++|+.+|+.+.+...-.+.. ..|..++.++...|++++|...+++. .
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332 2467778888999999999999999987731111121 15677888999999999999999988 5
Q ss_pred CCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHhhcCCCCCCchHH
Q 003150 716 FAPDA------GVWGTLLGACR--VHGNVELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 716 ~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
+.|+. ..+..++.++. ..++++.|...+++++.++|.....+.
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 55553 23444555554 346799999999999999987644443
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2.8e-10 Score=103.22 Aligned_cols=140 Identities=9% Similarity=0.029 Sum_probs=102.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcC
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAG 702 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 702 (844)
..+...|++++|+..+++... ..|+.. .+..+...|...|++++|++.|+...+ +.| ++..|..++.+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556677777777776654 344443 455666677788888888888887766 345 5777888888888888
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH-HHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 703 RLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEV-ASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 703 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
++++|+..+++. .+.|+ +.+|..+...+...|+.+.|.. .++++++++|+++.+|.+.+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 45565 5788888888888888866554 4689999999999999999988888775
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=1.8e-09 Score=109.61 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR-----------KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN------KI 648 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 648 (844)
..++..+...|...|++++|...|++..+ ....+|..+...|...|++++|+..|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555566666666555554331 12335666666666677777777666666552 11
Q ss_pred CCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhc-----CCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-C-----
Q 003150 649 KPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEY-----GIPA-RMEHYACMVDLFGRAGRLNKALETINSM-P----- 715 (844)
Q Consensus 649 ~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 715 (844)
.|+. .++..+...+...|++++|..+|+.+.+.. ...| ....+..++.+|.+.|++++|.+.+++. .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2322 355666666777777777777777765521 1122 2456667777777777777777777665 1
Q ss_pred ----CCCC-HHHHHHHHHHHHhc------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 716 ----FAPD-AGVWGTLLGACRVH------GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 716 ----~~p~-~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
..+. ...|..+....... ..+..+...++.+....|..+..+..|+.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 23343333333322 2234444445555455566677888888888888999988888876543
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=2.2e-08 Score=97.78 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 003150 587 IAESVLIDLYAKCGNLDFARTVFDMMQR--KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV----TFL 656 (844)
Q Consensus 587 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~ 656 (844)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++ ..|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHH
Confidence 3444556667777888888877777653 22 24566677777777888888888877776 344432 233
Q ss_pred HHHHHHhh------------------hCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 003150 657 AIISACGH------------------AGQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFGRAGRLNKALETINSMPFA 717 (844)
Q Consensus 657 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (844)
.+..++.. .|+.++|+..|+.+.+. .|+ ...+.+...+. ...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH---------
Confidence 33333332 34555565555555442 232 22221111100 000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---chHHHHHHHHHhcCCcchHHHHHHHHHHcCCc
Q 003150 718 PDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS---GYYVLLSNIHADAGQWGNVNKIRRLMKERGVQ 786 (844)
Q Consensus 718 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 786 (844)
......+...+...|+++.|+..++++++..|+++ .++..++.+|...|++++|.+.++.+...+.+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113455667889999999999999999999986 57899999999999999999999998877654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=1.3e-08 Score=102.18 Aligned_cols=183 Identities=11% Similarity=0.004 Sum_probs=132.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-Q---EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD----HVT 654 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t 654 (844)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|...|++++|+..|++.++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 445555667778888888888888887764 3 3 567778888888899999999999988883 442 235
Q ss_pred HHHHHHHHhh--------hCCHHHHHHHHHHhHhhcCCCCCchHH-----------------HHHHHHHHhcCCHHHHHH
Q 003150 655 FLAIISACGH--------AGQVEAGIHYFHCMTEEYGIPARMEHY-----------------ACMVDLFGRAGRLNKALE 709 (844)
Q Consensus 655 ~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~ 709 (844)
+..+..++.. .|++++|+..|+.+.+.+.- +.... ..++.+|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5566666777 88999999999888774221 23333 556888999999999999
Q ss_pred HHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHhcCCcc
Q 003150 710 TINSM-PFAPD----AGVWGTLLGACRVH----------GNVELAEVASSHLFDLDPQNSGY---YVLLSNIHADAGQWG 771 (844)
Q Consensus 710 ~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~ 771 (844)
.++++ ...|+ ...+..+..++... |+++.|+..++++++..|+++.+ ...+..++...|+.+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99887 23343 35677777777755 88999999999999999998644 444555544444433
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.91 E-value=6e-07 Score=95.32 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=38.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHHH
Q 003150 627 YGCHGHLKDSLALFHEMLNNKIKPD---HVTFLAIISACGHAGQVEAGIHYFHCMTEEY---GIPAR-MEHYACMVDLFG 699 (844)
Q Consensus 627 ~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~ 699 (844)
+...|++++|...+++.......+. ...+..+...+...|++++|...++...... +..++ ...+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 4445555555555544433211100 1123334444555555555555555443211 11111 124444555555
Q ss_pred hcCCHHHHHHHHHhC
Q 003150 700 RAGRLNKALETINSM 714 (844)
Q Consensus 700 ~~g~~~~A~~~~~~~ 714 (844)
+.|+.++|.+.+++.
T Consensus 305 ~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 556666655555544
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.90 E-value=4.6e-08 Score=99.12 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=124.9
Q ss_pred hHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003150 516 VVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDL 595 (844)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 595 (844)
..+|..+...|...|++++|+..+++...... .......+.....+..+...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIRE----------------------------KTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----------------------------HHcCCcchHHHHHHHHHHHH
Confidence 34566666666666676666666666543200 00000011223455556666
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHH
Q 003150 596 YAKCGNLDFARTVFDMMQR-------K----QEAAWNSMIAAYGCHGHLKDSLALFHEMLNN------KIKPDH-VTFLA 657 (844)
Q Consensus 596 y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ 657 (844)
|...|++++|.+.|++... + ...+|..+...|...|++++|+..|++..+. +-.|+. .++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6667777776666665432 1 2456777788888888888888888888763 113433 46777
Q ss_pred HHHHHhhhCCHHHHHHHHHHhHhhc------CCCC-CchHHHHHHHHHHhcC------CHHHHHHHHHhCC-CCCC-HHH
Q 003150 658 IISACGHAGQVEAGIHYFHCMTEEY------GIPA-RMEHYACMVDLFGRAG------RLNKALETINSMP-FAPD-AGV 722 (844)
Q Consensus 658 ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p~-~~~ 722 (844)
+...+...|++++|..+++.+.+.. ...+ ....+..+...+...+ .+.++...++... ..|+ ..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888999999999999998886531 1233 2344444444444333 3555555566553 2333 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 003150 723 WGTLLGACRVHGNVELAEVASSHLFDLD 750 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 750 (844)
|..+...+...|+++.|...++++++..
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 8888999999999999999999988753
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=4.8e-09 Score=120.74 Aligned_cols=144 Identities=8% Similarity=-0.090 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHH
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMV 695 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 695 (844)
..|..+...|...|++++|+..|++..+ ..|+. ..+..+..++...|++++|+..|+++.+ +.| +...|..+.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg 508 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALA 508 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHH
Confidence 3444444444444444444444444444 23322 2344444444444444444444444433 122 344444444
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc
Q 003150 696 DLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 767 (844)
.+|.+.|++++ ++.+++. ...|+ ...|..+..++...|++++|+..++++++++|++..++..++.+|...
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence 44444444444 4444443 22232 344444444444445555555555555555554444444444444433
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=3.6e-08 Score=98.89 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=136.7
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-ch
Q 003150 615 KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD----HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-ME 689 (844)
Q Consensus 615 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 689 (844)
.+...+-.+...+...|++++|+..|+++++. .|+ ...+..+..++...|++++|+..|+...+.+.-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45677778888999999999999999999984 555 357778888999999999999999999885333333 56
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 003150 690 HYACMVDLFGR--------AGRLNKALETINSM-PFAPD-AGVW-----------------GTLLGACRVHGNVELAEVA 742 (844)
Q Consensus 690 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~ 742 (844)
.+..++.++.+ .|++++|.+.+++. ...|+ ...+ ..+...+...|+++.|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788899998 99999999999887 33343 2233 4567778899999999999
Q ss_pred HHHhhcCCCCC---CchHHHHHHHHHhc----------CCcchHHHHHHHHHHc
Q 003150 743 SSHLFDLDPQN---SGYYVLLSNIHADA----------GQWGNVNKIRRLMKER 783 (844)
Q Consensus 743 ~~~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~ 783 (844)
++++++..|++ +.++..++.+|... |++++|...+++..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999985 45889999999977 8999999999987653
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=4.6e-08 Score=86.18 Aligned_cols=128 Identities=18% Similarity=0.279 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLF 698 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 698 (844)
.|..+...|...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+|+.+.+. .+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~---------- 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSA---------- 69 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCch----------
Confidence 35555566666666666666666665531 223344555555556666666666666655442 11123
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 003150 699 GRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 778 (844)
..|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 70 ----------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 70 ----------------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ----------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555555555555555555
Q ss_pred HHH
Q 003150 779 LMK 781 (844)
Q Consensus 779 ~m~ 781 (844)
++.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=2.7e-08 Score=87.74 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-PFA-PDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 767 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 767 (844)
.|..++..+.+.|++++|.++++++ ... .+...|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667778888888888888888776 223 34678888888899999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcC
Q 003150 768 GQWGNVNKIRRLMKERG 784 (844)
Q Consensus 768 g~~~~a~~~~~~m~~~~ 784 (844)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999887654
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=3.3e-08 Score=100.55 Aligned_cols=171 Identities=11% Similarity=0.010 Sum_probs=135.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhc
Q 003150 604 FARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEY 682 (844)
Q Consensus 604 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 682 (844)
...+.+......+...+..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 344444444444556677788888899999999999999988 56765 4777788889999999999999998855
Q ss_pred CCCCCchHHH-HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CchH
Q 003150 683 GIPARMEHYA-CMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN--SGYY 757 (844)
Q Consensus 683 ~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 757 (844)
..|+..... ...-.+.+.|+.++|.+.+++. ...|+ ...+..+...+...|+.+.|+..++++++.+|++ +.++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 355543332 2333466778888888888776 44554 6889999999999999999999999999999998 8899
Q ss_pred HHHHHHHHhcCCcchHHHHHHH
Q 003150 758 VLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
..|+.+|...|+.++|...+++
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHH
Confidence 9999999999999999886654
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=2.1e-07 Score=92.96 Aligned_cols=41 Identities=7% Similarity=-0.065 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChH-hHHHHHHHHHHcCCchH
Q 003150 494 MYAKCGRLDLAYKIFKRMSEKDVV-CWNSMITRYSQNGKPEE 534 (844)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~ 534 (844)
-..-.|.+..+..-...+...+.. .-.-+.++|...|++..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~ 63 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQS 63 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCcc
Confidence 344578888777755555432222 22224467777777653
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=2.5e-07 Score=92.37 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=69.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQR-----KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-----DHVTFLAIISA 661 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~a 661 (844)
+..+|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...|..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHH
Confidence 33444444444444444444321 1233344444555555555555555555544 344 23333333333
Q ss_pred --HhhhC--CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCC-HHHHHH
Q 003150 662 --CGHAG--QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PF----------APD-AGVWGT 725 (844)
Q Consensus 662 --~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~-~~~~~~ 725 (844)
....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ .. .|+ +.+...
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 12222 555555555555332 222111222222455555555555555433 11 132 344434
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 726 LLGACRVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
++......|+ .|.+.++++.+.+|++|-.
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 4444444454 5566666666666666543
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=7.7e-09 Score=93.59 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=101.7
Q ss_pred HHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003150 659 ISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGN 735 (844)
Q Consensus 659 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 735 (844)
...+...|++++|+..++.... ..| ++..+..+..+|.+.|++++|++.+++. .+.|+ +.+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456678999999999988744 455 4666778999999999999999999998 55665 6899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHH-HHHH
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIR-RLMK 781 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~-~~m~ 781 (844)
++.|+..++++++++|+++.++..++.+|...|++++|.+.+ ++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987753 5443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=2.6e-08 Score=92.97 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=91.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH-HHhc
Q 003150 624 IAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDL-FGRA 701 (844)
Q Consensus 624 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 701 (844)
...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|+..|+.+.+. .|++..+..+... +...
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555544443 23333 24444444555555555555555554332 2222222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHhcCCcchHHHHH
Q 003150 702 GRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN--SGYYVLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 702 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~ 777 (844)
+...+|.+.+++. ...|+ ...|..+...+...|++++|+..++++++.+|+. +..+..|+.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555554 33454 6888888888999999999999999999999875 558999999999999999999887
Q ss_pred HHHH
Q 003150 778 RLMK 781 (844)
Q Consensus 778 ~~m~ 781 (844)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=6.1e-08 Score=93.26 Aligned_cols=153 Identities=11% Similarity=0.073 Sum_probs=113.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH
Q 003150 595 LYAKCGNLDFARTVFDMMQRK---QEAAWNS----------------MIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VT 654 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t 654 (844)
.+...|++++|...|++..+. +...|.. +...|...|++++|+..|++.++ +.|+. ..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 344556666666665554431 2233444 88899999999999999999998 56765 57
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGR--LNKALETINSMPFAPDA--GVWGTLLGA 729 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~ 729 (844)
+..+...+...|++++|+..|+++.+ +.| ++..+..++.+|...|+ .+++...+++.. .|++ ..|..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 88888899999999999999999977 356 58889999998877664 445666666652 3443 345555666
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
+...|+++.|+..++++++++|+.
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCH
Confidence 777899999999999999999974
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=1.3e-07 Score=106.74 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHH
Q 003150 599 CGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678888888887764 3577899999999999999999999999998 56654 5788888899999999999999
Q ss_pred HHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHhhc
Q 003150 675 FHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVH---GNVELAEVASSHLFD 748 (844)
Q Consensus 675 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 748 (844)
|++..+. .| +...+..+..+|.+.|++++|.+.+++. ...|+ ...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999773 45 5788999999999999999999999987 44454 67888899999999 999999999999999
Q ss_pred CCCCCCchHHHHH
Q 003150 749 LDPQNSGYYVLLS 761 (844)
Q Consensus 749 ~~p~~~~~~~~l~ 761 (844)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888877
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=2.4e-08 Score=89.82 Aligned_cols=102 Identities=12% Similarity=0.027 Sum_probs=87.1
Q ss_pred cCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHH
Q 003150 682 YGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 682 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
..+.| ++..+..++..+.+.|++++|.+.|++. ...|+ +..|..+..++...|+++.|+..++++++++|+++.+|.
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34566 4667778888888999999999998887 44554 688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 759 LLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 759 ~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.++.+|...|++++|.+.+++..+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999988877654
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=3.6e-07 Score=88.11 Aligned_cols=172 Identities=6% Similarity=-0.081 Sum_probs=132.0
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhC----CHHHHHHHHHHhH
Q 003150 605 ARTVFDMMQR-KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAG----QVEAGIHYFHCMT 679 (844)
Q Consensus 605 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 679 (844)
|.+.|++..+ .+..++..+...|...+++++|+.+|++..+.| +...+..|...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444332 466777788888888888888998888888865 44555666666666 6 8899999998886
Q ss_pred hhcCCCCCchHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 003150 680 EEYGIPARMEHYACMVDLFGR----AGRLNKALETINSM-PFAPD---AGVWGTLLGACRV----HGNVELAEVASSHLF 747 (844)
Q Consensus 680 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 747 (844)
+. .++..+..|..+|.. .+++++|++++++. ...|+ +..+..|...+.. .+|.+.|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 356677788888877 78999999999887 44453 6788888888877 789999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhc-C-----CcchHHHHHHHHHHcCC
Q 003150 748 DLDPQNSGYYVLLSNIHADA-G-----QWGNVNKIRRLMKERGV 785 (844)
Q Consensus 748 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~~ 785 (844)
++ |.++..+..|+.+|... | +.++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 77788899999998764 3 88999999888776653
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=4.2e-08 Score=85.52 Aligned_cols=113 Identities=11% Similarity=0.063 Sum_probs=88.7
Q ss_pred CCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 003150 648 IKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVW 723 (844)
Q Consensus 648 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 723 (844)
+.|+. ..+......+.+.|++++|++.|+...+. .| ++..|..++.+|.+.|++++|++.+++. .+.|+ ...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55655 35666777788888888888888887662 44 5777888888888888888888888776 44454 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
..+..++...|+++.|+..++++++++|+++.++..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888889999999999999999999998888877765
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.6e-07 Score=107.93 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=137.8
Q ss_pred hchhchHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC
Q 003150 562 ANLHALHYGKEIHSLMIK-------DSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHG 631 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 631 (844)
...|++++|.+.++...+ ...+.+...+..+...|...|++++|.+.|++..+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 344455555555554441 11133456677778888888999999998887764 46778888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHH
Q 003150 632 HLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALE 709 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 709 (844)
++++|+..|++.++ +.|+. ..+..+..++...|++++ ++.|+++.+ +.| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988 56755 577888888999999999 999998876 355 57788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHhhcCCCCCCchHH
Q 003150 710 TINSM-PFAPD-AGVWGTLLGACRVHGN-----VELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 710 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
.+++. ...|+ ...|..+..++...|+ .+...++.+.+.++.|+++....
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 99998 66777 4677777777655554 34444555555556565555443
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=3e-07 Score=94.60 Aligned_cols=219 Identities=9% Similarity=-0.013 Sum_probs=149.8
Q ss_pred cCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003150 529 NGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTV 608 (844)
Q Consensus 529 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 608 (844)
.|++++|.+++++..+... .. + +...++++.|...+.. ....|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHH
Confidence 4567788888877654311 10 0 1113556666655544 35577788899888888
Q ss_pred HHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhhhCCHHHHHHH
Q 003150 609 FDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNK---IKPD--HVTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 609 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876543 12 3478888899999999999999999876521 1222 2467777778888 999999999
Q ss_pred HHHhHhhcCCCC----CchHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003150 675 FHCMTEEYGIPA----RMEHYACMVDLFGRAGRLNKALETINSM-PF---APD----AGVWGTLLGACRVHGNVELAEVA 742 (844)
Q Consensus 675 ~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 742 (844)
|++..+...-.. ....+..+..+|.+.|++++|++.+++. .+ .++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876321111 1467888999999999999999999887 11 122 23566666677778999999999
Q ss_pred HHHhhcCCCCCCch-----HHHHHHHHHhcCCcchHHH
Q 003150 743 SSHLFDLDPQNSGY-----YVLLSNIHADAGQWGNVNK 775 (844)
Q Consensus 743 ~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 775 (844)
+++++ ++|+.... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33444444 4566655544
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=1.2e-07 Score=107.21 Aligned_cols=150 Identities=18% Similarity=0.106 Sum_probs=115.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 707 (844)
.|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+.|++..+ ..| +...+..++.+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 4665 46788888899999999999999999866 455 588899999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc---CCcchHHHHHHHHHH
Q 003150 708 LETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA---GQWGNVNKIRRLMKE 782 (844)
Q Consensus 708 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~ 782 (844)
.+.+++. ...|+ ...|..+...+...|+.++|...++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999987 44454 688999999999999999999999999999999999999999999999 888899988877655
Q ss_pred cC
Q 003150 783 RG 784 (844)
Q Consensus 783 ~~ 784 (844)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=1.8e-05 Score=86.58 Aligned_cols=202 Identities=9% Similarity=-0.031 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhc
Q 003150 534 EAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFAR-TVFDMM 612 (844)
Q Consensus 534 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~ 612 (844)
.+..+|+++.... +.+...|...+.-+...|+.+.|..+++..++. +.+...+.. |+...+.++.. .+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 4566777766543 233555665666666777888888888888877 333333322 22221111111 111111
Q ss_pred C------------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhhCCHHHHHHHHHHhH
Q 003150 613 Q------------RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISA-CGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 613 ~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~ 679 (844)
. ......|...+..+.+.|..+.|..+|++. ... .++...|...... +...++.+.|+.+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 011245777777777778889999999888 321 1233344322221 122336888999999888
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 680 EEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 680 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
+.++ .++..+...++...+.|+.+.|..+++++. .....|...+.--..+|+.+.+..++++.++
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7532 234556667888888899999999999883 3567888888888888998888888777764
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=4.6e-07 Score=88.35 Aligned_cols=185 Identities=11% Similarity=0.000 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHhchhchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---HHHHH
Q 003150 551 CMSLSAALSACANLHALHYGKEIHSLMIKDSCR-S-DNIAESVLIDLYAKCGNLDFARTVFDMMQR--KQ-E---AAWNS 622 (844)
Q Consensus 551 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 622 (844)
...+......+...|++++|...++.+++.... + ....+..+..+|.+.|++++|...|++..+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788999999999999999986432 2 245777889999999999999999998764 32 2 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcC
Q 003150 623 MIAAYGC------------------HGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYG 683 (844)
Q Consensus 623 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 683 (844)
+..++.. .|++++|+..|+++++ ..|+.. ....... .+.. ...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~~~------~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LVFL------KDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HHHH------HHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HHHH------HHHHH----
Confidence 5555554 5789999999999998 567764 2221111 0000 11111
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 684 IPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA----GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 684 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
.....++..|.+.|++++|...++++ ...|+. ..+..+..++...|+.+.|+..++.+....|++..-
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999887 334442 568888899999999999999999999999987653
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=9.4e-08 Score=83.24 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=90.4
Q ss_pred CCCCC-chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 683 GIPAR-MEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 683 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
.+.|+ .+.+...+..|.+.|++++|++.|++. ...|+ +.+|..+..++...|+++.|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35664 567888999999999999999999987 44554 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHc
Q 003150 760 LSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 760 l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
++.+|...|++++|.+.+++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999877653
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=5.3e-07 Score=86.96 Aligned_cols=129 Identities=9% Similarity=-0.043 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDL 697 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 697 (844)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|+..|+...+. .+.+...|..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34555666677777777777777665 3556667777777777777777777777777653 12245666677777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC----------------C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 698 FGRAGRLNKALETINSM-PFAP----------------D-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~-~~~p----------------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
|.+.|++++|.+.+++. ...| + ..+|..+...+...|+.+.|...++++++++|+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 77777777777776665 2112 1 256666666667777777777777777777664
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=3e-07 Score=85.65 Aligned_cols=154 Identities=10% Similarity=0.016 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H-Hh
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIIS-A-CG 663 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a-~~ 663 (844)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++... ..|+... ..+.. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~-~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSY-KSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHH-HHHHHHHHHH
Confidence 34566778889999999999998875 4678899999999999999999999999876 4554432 22222 1 22
Q ss_pred hhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHH
Q 003150 664 HAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD---AGVWGTLLGACRVHGNVEL 738 (844)
Q Consensus 664 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~ 738 (844)
..+...+|+..++...+ ..| ++..+..++.++...|++++|.+.++++ ...|+ ...|..+...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233356888888766 355 5788899999999999999999999887 55554 5689999999999999999
Q ss_pred HHHHHHHhhc
Q 003150 739 AEVASSHLFD 748 (844)
Q Consensus 739 a~~~~~~~~~ 748 (844)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=9.4e-07 Score=90.17 Aligned_cols=162 Identities=7% Similarity=-0.016 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----ch
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----ME 689 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 689 (844)
.+...+..+...|++++|++.+++..+..-..+. ..+..+...+...|++++|+..++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677788899999999999888874322111 12333444567788999999999887652211112 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC------CC
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM----PFAPD-----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ------NS 754 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 754 (844)
.|..++..|...|++++|.+.+++. ...|+ ..++..+...|...|+++.|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999888776 11222 258888889999999999999999999887543 15
Q ss_pred chHHHHHHHHHhcCCcchH-HHHHHHH
Q 003150 755 GYYVLLSNIHADAGQWGNV-NKIRRLM 780 (844)
Q Consensus 755 ~~~~~l~~~y~~~g~~~~a-~~~~~~m 780 (844)
.+|..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6788999999999999999 7755544
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=1.9e-06 Score=83.01 Aligned_cols=150 Identities=11% Similarity=0.048 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCC
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQ 667 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 667 (844)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456778889999999999999998889999999999999999999999999999984 454 4678888889999999
Q ss_pred HHHHHHHHHHhHhhcC-------------CCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 003150 668 VEAGIHYFHCMTEEYG-------------IPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRV 732 (844)
Q Consensus 668 ~~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 732 (844)
+++|++.|+.+.+... ..| ....+..++.+|.+.|++++|.+.+++. ...|+. .
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~ 155 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------R 155 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------G
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------c
Confidence 9999999999977311 111 1278889999999999999999999988 666765 2
Q ss_pred cCCHHHHHHHHHHhhcCCC
Q 003150 733 HGNVELAEVASSHLFDLDP 751 (844)
Q Consensus 733 ~g~~~~a~~~~~~~~~~~p 751 (844)
.+..+.|...+++.....|
T Consensus 156 ~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGHHHHHHHHHHTTCCCCC
T ss_pred cchHHHHHHHHHhcccccc
Confidence 3455556665555444444
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=9.5e-08 Score=96.75 Aligned_cols=190 Identities=7% Similarity=-0.035 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIIS 660 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 660 (844)
+...+..+...|.+.|++++|...|+.... .+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566777888889999999999887653 4678888999999999999999999999888 56655 57777888
Q ss_pred HHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003150 661 ACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 739 (844)
Q Consensus 661 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 739 (844)
++...|++++|...|+...+. .| +...+...+....+.++..+... .......++..+...+ +.+ ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 899999999999999888653 22 11112222222222222122122 2223334445544444 333 36899999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHhc-CCcchHHHHHHHHHH
Q 003150 740 EVASSHLFDLDPQNSGYYVLLSNIHADA-GQWGNVNKIRRLMKE 782 (844)
Q Consensus 740 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 782 (844)
...++++++++|++......+..++... +++++|.+++++..+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988888888888777 788999999987754
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=5e-06 Score=84.73 Aligned_cols=160 Identities=8% Similarity=0.032 Sum_probs=119.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC----chHHH
Q 003150 622 SMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHV----TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR----MEHYA 692 (844)
Q Consensus 622 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 692 (844)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.+...-.++ ...|.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988732 122221 2234555667778999999999998773222223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC------CchH
Q 003150 693 CMVDLFGRAGRLNKALETINSM-----PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN------SGYY 757 (844)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 757 (844)
.++..|...|++++|.+.++++ ....+ ..++..+...+...|+++.|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999888776 11112 2578889999999999999999999999876543 5678
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHH
Q 003150 758 VLLSNIHADAGQ-WGNVNKIRRLMK 781 (844)
Q Consensus 758 ~~l~~~y~~~g~-~~~a~~~~~~m~ 781 (844)
..++.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599998777654
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.59 E-value=4.8e-07 Score=86.93 Aligned_cols=157 Identities=8% Similarity=0.025 Sum_probs=122.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHhhhCCHHHHHHHHHHhHhhc
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV-TFLA----------------IISACGHAGQVEAGIHYFHCMTEEY 682 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~ 682 (844)
+-.....+...|++++|+..|++.++ ..|+.. .+.. +..++...|++++|+..|+...+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 34455677899999999999999998 577764 5666 777899999999999999999773
Q ss_pred CCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--HHHHHHHHHHhhcCCCCCCchH
Q 003150 683 GIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGN--VELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 683 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.| ++..+..++.+|...|++++|.+.+++. ...|+ ..+|..+...+...|+ .+.+...+++++...|.. ..+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 55 6889999999999999999999999998 55665 6788888888766654 445566677765444332 245
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 758 VLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 758 ~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
..++..+...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6678888889999999999987654
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1.1e-07 Score=85.68 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=68.5
Q ss_pred CCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 684 IPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 684 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
+.| +...+..++..+.+.|++++|.+.+++. ...| ++..|..+..++...|+++.|+..++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 3455566666777777777777777665 3334 456677777777777777777777777777777777777777
Q ss_pred HHHHHhcCCcchHHHHHHHHHH
Q 003150 761 SNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 761 ~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
+.+|...|++++|.+.+++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777765544
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.56 E-value=5e-07 Score=91.75 Aligned_cols=160 Identities=9% Similarity=-0.049 Sum_probs=109.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003150 583 RSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAII 659 (844)
Q Consensus 583 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 659 (844)
+.+...+..+...+...|++++|...|++... .+...+..+...|...|++++|...+++... ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 33444555666677777788888777776653 3566777777778888888888888877766 456554332222
Q ss_pred H-HHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc
Q 003150 660 S-ACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD---AGVWGTLLGACRVH 733 (844)
Q Consensus 660 ~-a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~ 733 (844)
. .+...|..++|...++..... .| +...+..+..+|...|++++|.+.+.++ ...|+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2 355666777777777777652 44 5677777888888888888888877776 33343 56777888888888
Q ss_pred CCHHHHHHHHHHhh
Q 003150 734 GNVELAEVASSHLF 747 (844)
Q Consensus 734 g~~~~a~~~~~~~~ 747 (844)
|+.+.|...+++.+
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888877777654
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=7.4e-07 Score=77.02 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFA-PDAGVWGTLLGAC 730 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 730 (844)
.++..+...+...|++++|.++|+.+.+. .+.+...+..++..+.+.|++++|..+++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 35555556666667777777766666552 1224556666777777777777777777666 222 3467788888888
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcC
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 768 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 768 (844)
...|+++.|...++++++.+|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999988888876554
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=8.3e-07 Score=77.47 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGAC 730 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 730 (844)
..+..+...+...|++++|...|+..... .+.+...+..++.++...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35555566666777777777777776552 2224666777777777777777777777766 3334 367788888889
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcc
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWG 771 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 771 (844)
...|+++.|...++++++++|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998888764
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=8.9e-06 Score=82.10 Aligned_cols=185 Identities=14% Similarity=0.161 Sum_probs=103.1
Q ss_pred HHHHHhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003150 593 IDLYAKCG--NLDFARTVFDMMQR---KQEAAWNSMIAAY----GCH---GHLKDSLALFHEMLNNKIKP-DHVTFLAII 659 (844)
Q Consensus 593 i~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll 659 (844)
-..+...| +++++++.++.+.. ++..+|+.--..+ ... +++++++.+++++.+. .| |..+|..-.
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~ 151 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRK 151 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 33334444 55666665555443 3444555443333 333 5666666666666662 33 334555555
Q ss_pred HHHhhhCCHH--HHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 003150 660 SACGHAGQVE--AGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGR------LNKALETINSM-PFAP-DAGVWGTLLG 728 (844)
Q Consensus 660 ~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~ 728 (844)
-.+.+.|.++ +++++++.+.+. .| +...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+..
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ 228 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG 228 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 5555556555 666666666552 23 34445444445555554 66666666655 3333 3566666666
Q ss_pred HHHhcCC-HHHHHHHHHHhhcCC---CCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 729 ACRVHGN-VELAEVASSHLFDLD---PQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 729 ~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.+...|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++.+.+
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 6666555 333445666666655 66666666777777777777777777766654
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.51 E-value=3.2e-07 Score=94.41 Aligned_cols=197 Identities=9% Similarity=-0.016 Sum_probs=150.2
Q ss_pred chhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 003150 563 NLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHE 642 (844)
Q Consensus 563 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 642 (844)
..|++++|.++++...+..-. . .+...|++++|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 467888999999887764211 1 12225889999888765 35678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCC--C--CchHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 643 MLNN----KIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIP--A--RMEHYACMVDLFGRAGRLNKALETINS 713 (844)
Q Consensus 643 m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (844)
..+. |-.+. ..+|..+...+...|++++|+..|+...+.+.-. | ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 11111 2477888888999999999999999886642111 1 14678889999988 999999999988
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHhcCCcchHHHHHHH
Q 003150 714 M-PFA---PD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG------YYVLLSNIHADAGQWGNVNKIRRL 779 (844)
Q Consensus 714 ~-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 779 (844)
. .+. .+ ..++..+...+...|+++.|+..+++++++.|++.. .+..++.+|...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 111 11 367888899999999999999999999998776543 667788889999999999999986
Q ss_pred HH
Q 003150 780 MK 781 (844)
Q Consensus 780 m~ 781 (844)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.51 E-value=9.9e-05 Score=80.70 Aligned_cols=201 Identities=9% Similarity=-0.000 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccchHHHHHHHHhcCCHHHH-HHHHHhc
Q 003150 433 EALEKFRWLIQEKIIPNTVTLSSILPACADLAALKLGKELHCYILKNGLDGKCHVGSAITDMYAKCGRLDLA-YKIFKRM 511 (844)
Q Consensus 433 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m 511 (844)
.+..+|++++... +-+...|...+.-+...|+.+.|..++...++. +.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 3556777776643 333555665666666777888888888888777 33332222 23322111111 1111111
Q ss_pred C------------CCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchh-chHHHHHHHHHHH
Q 003150 512 S------------EKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLH-ALHYGKEIHSLMI 578 (844)
Q Consensus 512 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~ 578 (844)
. ......|-..+....+.+..+.|..+|++. ... .++...|......-...+ +.+.|..+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001234555555555566677777777766 211 122222321111111122 4666677766666
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003150 579 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEML 644 (844)
Q Consensus 579 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 644 (844)
+.. +.++..+...++...+.|+.+.|..+|+.+. +....|...+.--..+|+.+.+.++++++.
T Consensus 348 ~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 542 2223344555666666666666666666653 234555555555555566666555555554
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=9.6e-07 Score=81.03 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRV 732 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 732 (844)
+..+...+...|++++|...|+...+. .+.+...+..++.++...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445556666666666666666542 1224556666667777777777777766665 2233 45778888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHH--HHhcCCcchHHHHHHHHHH
Q 003150 733 HGNVELAEVASSHLFDLDPQNSGYYVLLSNI--HADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 733 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~m~~ 782 (844)
.|+++.|...++++++++|+++..+..++.+ +...|++++|.+.++....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988887554444 7888999999998776543
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=8.3e-07 Score=77.84 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGAC 730 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 730 (844)
.+..+...+...|++++|...|+...+ ..| +...+..++.++...|++++|.+.+++. ...| +...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 444455555555555555555555543 223 3455555666666666666666666555 2233 457788888888
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCC
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQ 769 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 769 (844)
...|+++.|+..++++++++|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999988877664
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=2.2e-07 Score=83.60 Aligned_cols=117 Identities=10% Similarity=0.029 Sum_probs=89.4
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 003150 640 FHEMLNNKIKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PF 716 (844)
Q Consensus 640 ~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 716 (844)
|+++.. +.|+.. .+..+...+...|++++|+..|+.+... .| ++..|..++.+|.+.|++++|++.+++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 456543 5666666788888888888888887663 44 6777888888888888888888888887 44
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 717 APD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 717 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
.|+ +..|..+..++...|+++.|+..++++++++|+++.......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 454 577888888899999999999999999999999887754443
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=5.4e-07 Score=93.79 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+++.+. ... ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~-~~~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKA-QAL--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHH-HHH--------HHHHHHHHHH
Confidence 44566666666666666666666666665 33332100 00111110 000 1356777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHH
Q 003150 697 LFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 774 (844)
+|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877 4445 46888899999999999999999999999999999999999999999999999984
Q ss_pred H-HHHHH
Q 003150 775 K-IRRLM 780 (844)
Q Consensus 775 ~-~~~~m 780 (844)
+ .++.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 55554
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=6.4e-07 Score=79.96 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
...+..++..+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 444555566666666666666666665 2333 35666666667777777777777777777777777777777777777
Q ss_pred hcCCcchHHHHHHHHHH
Q 003150 766 DAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 766 ~~g~~~~a~~~~~~m~~ 782 (844)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777665544
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=4.4e-07 Score=81.48 Aligned_cols=104 Identities=7% Similarity=0.004 Sum_probs=76.6
Q ss_pred CCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 003150 648 IKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVW 723 (844)
Q Consensus 648 ~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 723 (844)
+.|+.. .+..+...+...|++++|+..|+.+.+ +.| ++..|..++.+|.+.|++++|++.+++. .+.|+ +..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 455553 556666677777888888888877765 345 5677777888888888888888877777 44454 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
..+..++...|+++.|+..+++++++.|+.+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888888753
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.41 E-value=2.7e-05 Score=79.17 Aligned_cols=158 Identities=11% Similarity=-0.023 Sum_probs=120.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Ch-----H-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 003150 592 LIDLYAKCGNLDFARTVFDMMQRK---QE-----A-AWNSMIAAYGCHGHLKDSLALFHEMLNNKIK-PDH----VTFLA 657 (844)
Q Consensus 592 li~~y~~~g~~~~A~~~~~~~~~~---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ 657 (844)
.+..+.+.|++++|.+.+++..+. +. . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999886542 11 1 3334666777788999999999999984222 232 26888
Q ss_pred HHHHHhhhCCHHHHHHHHHHhHhhc----CCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003150 658 IISACGHAGQVEAGIHYFHCMTEEY----GIPA-RMEHYACMVDLFGRAGRLNKALETINSM-------PFAPD-AGVWG 724 (844)
Q Consensus 658 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 724 (844)
+...+...|++++|..+|+.+.+.. +..| ....|..++..|.+.|++++|.+.+++. +..+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999987522 1122 2457889999999999999999998876 22233 57888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHhhcC
Q 003150 725 TLLGACRVHG-NVELAEVASSHLFDL 749 (844)
Q Consensus 725 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 749 (844)
.+...+...| +.+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 569999999998764
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.40 E-value=7.9e-05 Score=75.15 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHCCCCCChHH-HHHHHHHHhchh--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CCH
Q 003150 533 EEAIDLFRQMAIEGVKHDCMS-LSAALSACANLH--ALHYGKEIHSLMIKDSCRSDNIAESVLIDLY----AKC---GNL 602 (844)
Q Consensus 533 ~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~---g~~ 602 (844)
++|++++.++... .|+..| ++.--.+....+ .++++...++.++....+ +..+|+.-...+ .+. +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555442 233322 222222333344 555555555555544322 223333322222 334 788
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCC------HHHH
Q 003150 603 DFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLK--DSLALFHEMLNNKIKPDHVTFLAIISACGHAGQ------VEAG 671 (844)
Q Consensus 603 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~~~a 671 (844)
+++.++++.+.+ +|..+|+--.-.+.+.|+++ ++++.++++++.. .-|...|........+.|. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999988764 57788888888888888888 9999999999853 2344567666666666666 8999
Q ss_pred HHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003150 672 IHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNK-ALETINSM-PF----APDAGVWGTLLGACRVHGNVELAEVASS 744 (844)
Q Consensus 672 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 744 (844)
+++++.+... .| +...|.-+..++.+.|+..+ +.++.++. .. ..++..+..++..+...|+.++|..+++
T Consensus 206 l~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 206 LNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999988773 45 67888888889989888444 55677776 22 3456889999999999999999999999
Q ss_pred Hhhc-CCCCCCchHHHHHH
Q 003150 745 HLFD-LDPQNSGYYVLLSN 762 (844)
Q Consensus 745 ~~~~-~~p~~~~~~~~l~~ 762 (844)
.+.+ .+|-...+|...++
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9996 89998888876654
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.40 E-value=1.1e-05 Score=77.50 Aligned_cols=160 Identities=10% Similarity=-0.067 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR-KQEAAWNSMIAAYGCHG----HLKDSLALFHEMLNNKIKPDHVTFLAII 659 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll 659 (844)
++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+.+|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 455566677777777888888888876654 456677777777776 6 7888888888887754 445566666
Q ss_pred HHHhh----hCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003150 660 SACGH----AGQVEAGIHYFHCMTEEYGIPAR---MEHYACMVDLFGR----AGRLNKALETINSM-PFAPDAGVWGTLL 727 (844)
Q Consensus 660 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll 727 (844)
..+.. .+++++|+++|+...+ ..|+ +..+..|..+|.. .+++++|++++++. ...+++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66665 7788889888888755 2332 6777888888887 77899999988887 3334555666666
Q ss_pred HHHHhc-C-----CHHHHHHHHHHhhcCCC
Q 003150 728 GACRVH-G-----NVELAEVASSHLFDLDP 751 (844)
Q Consensus 728 ~~~~~~-g-----~~~~a~~~~~~~~~~~p 751 (844)
..+... | |.++|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666542 3 88999999988877643
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=5.8e-07 Score=88.51 Aligned_cols=181 Identities=9% Similarity=-0.004 Sum_probs=111.7
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 003150 598 KCGNLDFARTVFDMMQR---KQEAAWNSM-------IAAYGCHGHLKDSLALFHEMLNNKIKPDHV-------------- 653 (844)
Q Consensus 598 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------------- 653 (844)
..++...|.+.|.+..+ .....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35667777777776653 235566666 3455555555555555554443 333321
Q ss_pred --------HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 003150 654 --------TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDA----G 721 (844)
Q Consensus 654 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 721 (844)
....+...+...|++++|.+.|+.+.. ..|+......+..++.+.|++++|++.+++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122344556777777777777776643 2343225555666777777788877777766333332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CC-CCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLD--PQ-NSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
++..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+++++.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56666777777777877877777776433 44 4446677777777778888877777777654
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=4.9e-07 Score=84.26 Aligned_cols=126 Identities=10% Similarity=0.103 Sum_probs=65.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH-HHhcCCH-
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDL-FGRAGRL- 704 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 704 (844)
...|++++|+..+++..+. .| +...+..+...+...|++++|..+|+.+.+. .+.++..+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3455666666666666552 33 3345555555666666666666666665542 11234455555555 4555555
Q ss_pred -HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 705 -NKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 705 -~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
++|.+.+++. ...|+ ...|..+...+...|+++.|...++++++++|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 6666555554 22232 34555555555555666666666666666666554443
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=1.6e-06 Score=73.19 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=82.8
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC--CCchHHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ--NSGYYVLLSN 762 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 762 (844)
+...+..++..+.+.|++++|...+++. ...| +..+|..+...+...|+++.|...++++++.+|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888889999998888876 3333 4678888888899999999999999999999999 9999999999
Q ss_pred HHHhc-CCcchHHHHHHHHHHcC
Q 003150 763 IHADA-GQWGNVNKIRRLMKERG 784 (844)
Q Consensus 763 ~y~~~-g~~~~a~~~~~~m~~~~ 784 (844)
+|... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999988776543
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.4e-06 Score=75.79 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 766 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 766 (844)
..+..++..+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555566666666666666666655 2333 356666666667777777777777777777777777777777777777
Q ss_pred cCCcchHHHHHHHHHH
Q 003150 767 AGQWGNVNKIRRLMKE 782 (844)
Q Consensus 767 ~g~~~~a~~~~~~m~~ 782 (844)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7777777776665544
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=3.3e-06 Score=83.12 Aligned_cols=139 Identities=13% Similarity=0.020 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR--MEHYACMVDL 697 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 697 (844)
+-.....+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 34456667778888888888877766 3466655555555778888888888888755331 1 121 2356778888
Q ss_pred HHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 698 FGRAGRLNKALETINSM---PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
+.+.|++++|++.+++. +..|. ...+..+..+++..|+.++|...++++++.+|+ +.++..|.+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 88899999999888887 22254 346777778888999999999999999999998 7776666543
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=6.4e-07 Score=79.96 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=85.6
Q ss_pred CCCCHH-HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 003150 648 IKPDHV-TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVW 723 (844)
Q Consensus 648 ~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 723 (844)
+.|+.. .+..+...+...|++++|+..|+.+... .| ++..|..++.+|.+.|++++|.+.+++. ...|+ +..|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 445443 4555566777888888888888887663 44 5777788888888888888888888877 33444 5678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 724 GTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 724 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
..+..++...|+++.|+..++++++++|+++........+
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8888888999999999999999999999988776655444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=2.5e-06 Score=79.40 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=71.1
Q ss_pred hhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 003150 663 GHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGA-CRVHGNV--E 737 (844)
Q Consensus 663 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 737 (844)
...|++++|...++...+. .+.+...|..++.+|...|++++|.+.+++. ...| +...|..+... +...|+. +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666542 1224566666666677777777777666665 2223 34555555555 5566666 6
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 738 LAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 738 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.|+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6777777777777776666667777777777777777666665543
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=1.2e-05 Score=81.96 Aligned_cols=162 Identities=10% Similarity=-0.045 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 003150 588 AESVLIDLYAKCGNLDFARTVFDMMQR---KQE------AAWNSMIAAYGCHGHLKDSLALFHEMLNNKI---KPD--HV 653 (844)
Q Consensus 588 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~ 653 (844)
.+...+..|...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334466777888899998888875432 111 2344456667788899999999998876321 122 23
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CCC-H
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-----MEHYACMVDLFGRAGRLNKALETINSM-PF------APD-A 720 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p~-~ 720 (844)
++..+...+...|++++|..+|+++.+.....|+ ...|..++..|.+.|++++|.+.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888899999999999999888732222222 257888899999999999999888876 11 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHhhcC
Q 003150 721 GVWGTLLGACRVHGNVELA-EVASSHLFDL 749 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 749 (844)
.+|..+...+...|+.+.| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888888999999999 7778887654
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=6.1e-06 Score=70.22 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACR 731 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 731 (844)
.+..+...+...|++++|...|+..... .+.++..+..++.++.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555556666666666666666542 1224555666666666666666666666655 2233 3567777777788
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
..|+++.|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888888888888888888888877777776553
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=1.3e-06 Score=75.32 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHh
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 766 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 766 (844)
..+..++..+.+.|++++|...+++. ...| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778888999999999998887 4455 468888888889999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHH
Q 003150 767 AGQWGNVNKIRRLMKE 782 (844)
Q Consensus 767 ~g~~~~a~~~~~~m~~ 782 (844)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999887654
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=3.7e-06 Score=74.17 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=65.7
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
++..+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4555666666666666666666666655 22333 566667777777777777777777777777777777777777777
Q ss_pred HhcCCcchHHHHHHHHHH
Q 003150 765 ADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 765 ~~~g~~~~a~~~~~~m~~ 782 (844)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777766554
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=1.2e-05 Score=76.54 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=55.9
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHhhhCCHH
Q 003150 598 KCGNLDFART---VFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN----NKIKPDH-VTFLAIISACGHAGQVE 669 (844)
Q Consensus 598 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~-~t~~~ll~a~~~~g~~~ 669 (844)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++..+ .|..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566677766 44332223445666666666666666666666666554 1111111 24444445555666666
Q ss_pred HHHHHHHHhHhhcCCCC-C----chHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 670 AGIHYFHCMTEEYGIPA-R----MEHYACMVDLFGRAGRLNKALETINS 713 (844)
Q Consensus 670 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (844)
+|..++++..+...-.+ + ...+..+..++...|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666555544211111 1 22344444444444555544444443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=4.4e-06 Score=79.41 Aligned_cols=168 Identities=8% Similarity=0.005 Sum_probs=101.4
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHH
Q 003150 595 LYAKCGNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG 671 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 671 (844)
.....|+++.|.+.++.-.. .....|..+...+...|++++|+..|++.++ +.|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHHHH
Confidence 33444556666555543222 1344566677777777777778777777776 33332111000 00000
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 003150 672 IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDL 749 (844)
Q Consensus 672 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 749 (844)
. ..+ ....|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..+++++++
T Consensus 83 ~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 000 0245667778888888888888888776 3344 4678888888999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCcchHH-HHHHHHHHc
Q 003150 750 DPQNSGYYVLLSNIHADAGQWGNVN-KIRRLMKER 783 (844)
Q Consensus 750 ~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~~ 783 (844)
+|+++.++..++.++...|+.+++. ..++.|-.+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888888777 455555433
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.26 E-value=5.6e-06 Score=78.86 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=56.0
Q ss_pred chhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C---ChHHHHHHHHHHHhcCCh
Q 003150 563 NLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR------K---QEAAWNSMIAAYGCHGHL 633 (844)
Q Consensus 563 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~g~~ 633 (844)
..|++++|.++++.+.. ........+..+...|...|++++|...|++... . ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555554333322 1123444555555666666666666655554432 1 123455555556666666
Q ss_pred HHHHHHHHHHHHC----CCCC-C-HHHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 634 KDSLALFHEMLNN----KIKP-D-HVTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 634 ~~A~~l~~~m~~~----g~~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
++|+..+++..+. |-.| . ...+..+...+...|++++|..++++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666555441 1011 0 1234444445555666666666655554
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.1e-06 Score=72.72 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACR 731 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 731 (844)
.+..+...+...|++++|+..|+...+. .+.++..|..++.+|.+.|++++|++.+++. ...|+ ...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4444555566666666666666666552 1224566667777777777777777777665 33444 567777888888
Q ss_pred hcCCHHHHHHHHHHhhcCC------CCCCchHHHHHHHH
Q 003150 732 VHGNVELAEVASSHLFDLD------PQNSGYYVLLSNIH 764 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 764 (844)
..|+++.|+..++++++++ |+++.+...+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888 77777776666553
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=4.7e-06 Score=76.39 Aligned_cols=108 Identities=11% Similarity=-0.003 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGA 729 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 729 (844)
..+..+...+...|++++|+.+|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35556666677777777777777777652 34 5667777778888888888888777776 34454 6788889999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 730 CRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 730 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
+...|+++.|+..++++++++|+++..+...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999877665533
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=4.4e-06 Score=76.54 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
+...+..++..+.+.|++++|++.+++. ...| +...|..+...+...|+++.|+..++++++++|+++.+|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4667888999999999999999999988 4455 5788999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 003150 765 ADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 765 ~~~g~~~~a~~~~~~m~~~ 783 (844)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999877654
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=2.7e-06 Score=74.06 Aligned_cols=93 Identities=4% Similarity=-0.069 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc-------hHHHH
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG-------YYVLL 760 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 760 (844)
.+..++..+.+.|++++|++.|++. .+.|+ +..|..+..++...|+++.|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777788888888888888776 44454 577888888888899999999999999998887754 56678
Q ss_pred HHHHHhcCCcchHHHHHHHHHH
Q 003150 761 SNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 761 ~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8888889999999998876543
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=4.9e-06 Score=72.75 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
+...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|+..++++++.+|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4677888999999999999999999987 5555 5688999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 003150 765 ADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 765 ~~~g~~~~a~~~~~~m~~~ 783 (844)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999877654
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-05 Score=71.46 Aligned_cols=77 Identities=16% Similarity=0.055 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
..+..+...|...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++++|+++.++..++.+..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 34444555555555555555555544 2233 35667777777888888888888888888888888877777766543
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=6e-06 Score=70.29 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
+..+..++..+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778889999999999999999987 3344 57888899999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHc
Q 003150 766 DAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 766 ~~g~~~~a~~~~~~m~~~ 783 (844)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999877654
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=9.1e-06 Score=72.65 Aligned_cols=97 Identities=11% Similarity=-0.007 Sum_probs=86.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
+...+..++..+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667778888888999999999988887 66677 578888888999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHc
Q 003150 762 NIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 762 ~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999877654
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=1e-05 Score=88.40 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCC
Q 003150 626 AYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGR 703 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 703 (844)
.+.+.|++++|++.|++.++ ..|+ ..++..+..++...|++++|++.+++..+ +.| +...|..++.+|.+.|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC
Confidence 34455566666666666555 3443 34555555566666666666666666544 233 35555666666666666
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH-----------HhhcCCCCCCchHH----------
Q 003150 704 LNKALETINSM-PFAPD-AGVWGTLLGA--CRVHGNVELAEVASS-----------HLFDLDPQNSGYYV---------- 758 (844)
Q Consensus 704 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~-----------~~~~~~p~~~~~~~---------- 758 (844)
+++|.+.+++. ...|+ ...|..+..+ +...|++++|+..++ ++++++|+..+.+.
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l 169 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFM 169 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHH
Confidence 66666666555 22222 2333333333 555566666666666 66666665433322
Q ss_pred -HHHHHHHhcCCcchHH--HHHHHHHHcCCccCCCeeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHhcCcccCC
Q 003150 759 -LLSNIHADAGQWGNVN--KIRRLMKERGVQKIPGYSWIELNNITHLFVAADESHSESAQMLNILLPELEKEGYIPQP 833 (844)
Q Consensus 759 -~l~~~y~~~g~~~~a~--~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 833 (844)
.+...+...+...+.. .+....++. +++.|....+.........+.||- |-+. ..|...++..|+.|..
T Consensus 170 ~~lie~l~~~~~l~e~~v~~L~~~a~ei-l~~e~~~~~~~~~~~~~~~vigDi-HG~~----~~l~~~l~~~~~~~~~ 241 (477)
T 1wao_1 170 KELMQWYKDQKKLHRKCAYQILVQVKEV-LSKLSTLVETTLKETEKITVCGDT-HGQF----YDLLNIFELNGLPSET 241 (477)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHH-HHTSCSEEEECCCSSCEEEEECBC-TTCH----HHHHHHHHHHCCCBTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH-HccCCCeEEeecCCCcceEEEeCC-CCCH----HHHHHHHHHcCCCCCc
Confidence 1223333444444322 234333321 234454433333222345566663 4332 3333444455665543
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=8e-06 Score=70.30 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
...+..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 3334 56889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHc
Q 003150 766 DAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 766 ~~g~~~~a~~~~~~m~~~ 783 (844)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999987654
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00012 Score=74.50 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003150 589 ESVLIDLYAKCG-NLDFARTVFDMMQR---KQEAAWNSMIAAYGCH-G-HLKDSLALFHEMLNNKIKP-DHVTFLAIISA 661 (844)
Q Consensus 589 ~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a 661 (844)
|+.--..+...| .++++++.++.+.. ++..+|+.-.-.+... + ++++++++++++.+. .| |...|..-.-.
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wv 168 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWL 168 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 333333444445 47777777776654 4566777766666665 6 778888888888773 44 34466555444
Q ss_pred HhhhCCHH--------HHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHH
Q 003150 662 CGHAGQVE--------AGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGR-------LNKALETINSM-PFAP-DAGVW 723 (844)
Q Consensus 662 ~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~ 723 (844)
..+.|.++ +++++++.+.+. .| +...|+....++.+.|+ ++++++.++++ ...| |...|
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 55555444 788888888763 34 56667777777777765 68888888776 4445 46888
Q ss_pred HHHHHHHHhcCCH--------------------HHHHHHHHHhhcCC------CCCCchHHHHHHHHHhcCCcchHHHHH
Q 003150 724 GTLLGACRVHGNV--------------------ELAEVASSHLFDLD------PQNSGYYVLLSNIHADAGQWGNVNKIR 777 (844)
Q Consensus 724 ~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~ 777 (844)
..+-+.+...|+. .........+.... +..+-+...|+.+|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8877777665543 23334444444332 456667889999999999999999999
Q ss_pred HHHHH
Q 003150 778 RLMKE 782 (844)
Q Consensus 778 ~~m~~ 782 (844)
+.+.+
T Consensus 326 ~~l~~ 330 (349)
T 3q7a_A 326 EKLSS 330 (349)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.16 E-value=2.1e-05 Score=71.91 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
..|..+...+...|++++|...|++..+ ..| +..++..+...+...|++++|...++...+. .+.+...+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4566677777788888888888888777 344 3456777777788888888888888887663 2335677788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-HHHHH--HHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 697 LFGRAGRLNKALETINSM-PFAPD-AGVWG--TLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
++.+.|++++|.+.+++. ...|+ ...|. .++..+...|+++.|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888776 33333 34443 333336667888888888776544
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=1.4e-05 Score=86.88 Aligned_cols=143 Identities=11% Similarity=0.064 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHHH--------HHHHHHHHHH
Confidence 45677777778888888888888887776 33332110 0 011100 0000 1356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHH
Q 003150 697 LFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVN 774 (844)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 774 (844)
+|.+.|++++|++.+++. .+.|+ ...|..+..++...|+++.|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887 44444 6888899999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHH
Q 003150 775 K-IRRLMK 781 (844)
Q Consensus 775 ~-~~~~m~ 781 (844)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 445453
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=5.1e-06 Score=90.82 Aligned_cols=116 Identities=9% Similarity=0.016 Sum_probs=100.2
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNV 736 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 736 (844)
..+...|++++|++.|+++.+. .| +...|..++.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3567889999999999999773 55 5889999999999999999999999988 55565 68899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHH--HHhcCCcchHHHHHH
Q 003150 737 ELAEVASSHLFDLDPQNSGYYVLLSNI--HADAGQWGNVNKIRR 778 (844)
Q Consensus 737 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 778 (844)
++|+..++++++++|+++..+..++.+ +...|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988 888999999999877
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.09 E-value=1.5e-05 Score=69.15 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=86.9
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH 764 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 764 (844)
+...+..++..+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567788899999999999999999987 3344 5788999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 003150 765 ADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 765 ~~~g~~~~a~~~~~~m~~~ 783 (844)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999877654
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=6.7e-06 Score=72.83 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM--------PFAPDA-GVW----GTLLGACRVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
.|..+..++.+.|++++|++.+++. .+.|+. ..| .....++...|++++|+..++++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4445555555555555555444443 347774 678 888888889999999999999999999988877
Q ss_pred HHHHH
Q 003150 757 YVLLS 761 (844)
Q Consensus 757 ~~~l~ 761 (844)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65554
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=8e-06 Score=71.09 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=45.2
Q ss_pred HHHhhhCCHHHHHHHHHHhHhhcCCCC-Cc---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003150 660 SACGHAGQVEAGIHYFHCMTEEYGIPA-RM---EHYACMVDLFGRAGRLNKALETINSM-PFAPD----AGVWGTLLGAC 730 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 730 (844)
..+...|++++|...|+.+.+. .| ++ ..+..++.++.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445555555555555555442 12 12 34444555555555555555555444 11222 23344444445
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCch
Q 003150 731 RVHGNVELAEVASSHLFDLDPQNSGY 756 (844)
Q Consensus 731 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 756 (844)
...|+.+.|...++++++..|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 55555555555555555555554433
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=1.5e-05 Score=70.24 Aligned_cols=100 Identities=7% Similarity=-0.081 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 003150 651 DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLG 728 (844)
Q Consensus 651 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 728 (844)
+...+..+...+...|++++|...|+...+. .+.+...|..++.++...|++++|...+++. ...|+ ...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666677777777777666552 1224566667777777777777777777665 33343 567777888
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 729 ACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 729 ~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
.+...|+++.|+..++++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888877
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.2e-05 Score=69.18 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACR 731 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 731 (844)
+..+...+...|++++|+..|+.+.+. .| +...|..+..++.+.|++++|++.+++. ...|+ ...|..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455677778888888888877662 44 5677777888888888888888888776 44554 577888888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCC
Q 003150 732 VHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
..|+.+.|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88899999999999999888764
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=8.5e-06 Score=72.20 Aligned_cols=62 Identities=8% Similarity=-0.055 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCCCchH----HHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDL-------DPQNSGYY----VLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
..|..+..++...|++++|+..+++++++ +|+++..| ..++.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 48999999999999999999999999999 99999999 9999999999999999999887654
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.0007 Score=68.67 Aligned_cols=190 Identities=10% Similarity=0.003 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC-hHHHHHHH
Q 003150 567 LHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCG--NLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGH-LKDSLALF 640 (844)
Q Consensus 567 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 640 (844)
++++..+++.+.... +-+..+|+.-...+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 556666666666553 335556666556666666 37788888877764 566777777777777777 57888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhhh--------------CCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhc---
Q 003150 641 HEMLNNKIKPD-HVTFLAIISACGHA--------------GQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRA--- 701 (844)
Q Consensus 641 ~~m~~~g~~pd-~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 701 (844)
+++++. .|+ ...|+.....+.+. +.++++++++..... ..| |...|+-+-.++.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 888874 443 34555544444433 457778887777765 345 555565454455444
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 003150 702 --------GRLNKALETINSM-PFAPDAGVWGTLLGACR-----VHGNVELAEVASSHLFDLDPQNSGYYVLLSNI 763 (844)
Q Consensus 702 --------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 763 (844)
+.++++++.++++ ...||. .|.-+..++. ..|..++....+.+++++||-..+.|..|..-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4577777777777 556664 3443222221 24667777788888888888777777766544
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=1e-05 Score=70.34 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=54.4
Q ss_pred HHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----HHHHHHHHH
Q 003150 658 IISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM----P-FAPD----AGVWGTLLG 728 (844)
Q Consensus 658 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~----~~~~~~ll~ 728 (844)
+...+...|++++|..+|+...+. .+.++..+..++.++.+.|++++|.+.+++. + ..++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444331 1113334444444444444444444444443 1 0122 455666777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 729 ACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 729 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
.+...|+++.|...++++++..| ++.....++.++.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777888888888888877777 4555555554433
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00011 Score=81.63 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhh
Q 003150 600 GNLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGH----------LKDSLALFHEMLNNKIKPDH-VTFLAIISACGHA 665 (844)
Q Consensus 600 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 665 (844)
..-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 344677888887764 456788887777777777 8999999999998 45655 5788877788888
Q ss_pred C--CHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc------
Q 003150 666 G--QVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAG-RLNKALETINSM-PFAPD-AGVWGTLLGACRVH------ 733 (844)
Q Consensus 666 g--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~------ 733 (844)
| +++++++.++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...|+ ...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999873 45 6777888888888889 899999999998 55554 68999988887663
Q ss_pred --------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcch
Q 003150 734 --------GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGN 772 (844)
Q Consensus 734 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 772 (844)
+.++++...+++++.++|++.++|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999988655
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=2.8e-05 Score=80.67 Aligned_cols=118 Identities=9% Similarity=-0.015 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-Q---------------EAAWNSMIAAYGCHGHLKDSLALFHEMLNN 646 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 646 (844)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 466788899999999999999999997653 3 2 36777777777777777777777777777
Q ss_pred CCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHH
Q 003150 647 KIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 647 g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 707 (844)
+.|+. ..+..+..++...|++++|+..|+.+.+ +.| +...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44543 4666666677777777777777777755 234 455666666666666666666
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.02 E-value=1.8e-05 Score=66.57 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP---DAGVWGTLLGA 729 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 729 (844)
.+..+...+...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|.+.+++. ...| +..+|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555566666666666666666552 1224556666677777777777777776665 3333 35677777777
Q ss_pred HHhc-CCHHHHHHHHHHhhcCCCCCC
Q 003150 730 CRVH-GNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 730 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 754 (844)
+... |+.+.|+..++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.01 E-value=2e-05 Score=79.51 Aligned_cols=107 Identities=6% Similarity=-0.124 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003150 651 DHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLL 727 (844)
Q Consensus 651 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 727 (844)
+...+..+...+...|++++|+..|+...+. .| +...|..++.+|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4457777888899999999999999998773 45 6788999999999999999999999887 56665 57888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 728 GACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 728 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
.++...|+++.|+..++++++++|+++..+..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 112 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence 899999999999999999999999876554433
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=3.5e-06 Score=72.04 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=42.1
Q ss_pred hCCHHHHHHHHHHhHhhcCC-CC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003150 665 AGQVEAGIHYFHCMTEEYGI-PA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAE 740 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 740 (844)
.|++++|+..|++..+. +. .| +...+..++.+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555555555441 10 12 2344455555555555555555555544 22232 344444555555555555555
Q ss_pred HHHHHhhcCCCCCCch
Q 003150 741 VASSHLFDLDPQNSGY 756 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~ 756 (844)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 5555555555555443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=4.8e-05 Score=66.04 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC---CchHHHHHHHHH
Q 003150 694 MVDLFGRAGRLNKALETINSM-PFAPDA----GVWGTLLGACRVHGNVELAEVASSHLFDLDPQN---SGYYVLLSNIHA 765 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 765 (844)
++..+.+.|++++|.+.+++. ...|+. ..|..+...+...|+++.|...++++++.+|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344444555555555554443 111221 244444444445555555555555555555554 344455555555
Q ss_pred hcCCcchHHHHHHHHH
Q 003150 766 DAGQWGNVNKIRRLMK 781 (844)
Q Consensus 766 ~~g~~~~a~~~~~~m~ 781 (844)
..|++++|.+.++...
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555544443
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=1.3e-05 Score=73.27 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
.+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 4555555555666666666666666666666666666666666666666666666555443
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=2.2e-05 Score=82.51 Aligned_cols=137 Identities=7% Similarity=0.022 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHH
Q 003150 617 EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMV 695 (844)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 695 (844)
...|..+...+.+.|++++|+..|++.++ +.|+.. ..-..+++. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 34577777888888888888888887766 212110 000111111 1223 356788899
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchH
Q 003150 696 DLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNV 773 (844)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 773 (844)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|++++|+..++++++++|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888 66665 688889999999999999999999999999999999999999999988887776
Q ss_pred HH
Q 003150 774 NK 775 (844)
Q Consensus 774 ~~ 775 (844)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=7.2e-06 Score=77.87 Aligned_cols=144 Identities=10% Similarity=-0.001 Sum_probs=85.6
Q ss_pred HHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------HH
Q 003150 559 SACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQR---KQE----------------AA 619 (844)
Q Consensus 559 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~----------------~~ 619 (844)
......|.++.+.+.++...... ......+..+...|.+.|++++|...|++..+ .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 34445566666666655332211 11344566788899999999999999997653 222 56
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPD-HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDL 697 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 697 (844)
|..+..+|...|++++|+..+++.++ +.|+ ...+..+..++...|++++|+..|+...+. .| +...+..+..+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHH
Confidence 66777777777777777777777776 3443 345666666677777777777777776552 33 45555666666
Q ss_pred HHhcCCHHHHH
Q 003150 698 FGRAGRLNKAL 708 (844)
Q Consensus 698 ~~~~g~~~~A~ 708 (844)
+...|+.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.98 E-value=4.9e-05 Score=65.87 Aligned_cols=60 Identities=7% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
+|..+...+.+.|++++|+..|++.++ +.|+. ..|..+..++...|++++|++.|+...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555666666666666666666666 44443 3455555566666666666666665544
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.9e-05 Score=84.11 Aligned_cols=163 Identities=8% Similarity=-0.066 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhhhCCHHHHHHHHHHhHhh---cCCCC-Cch
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHV----TFLAIISACGHAGQVEAGIHYFHCMTEE---YGIPA-RME 689 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 689 (844)
++..+...|...|++++|.+++.++... +..++.. +...+-..+...|..++|.++++..... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4667778888888888888888776541 1112221 2222223445668888888887776442 12222 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-------C
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-----PF--APD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN-------S 754 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~ 754 (844)
.+..++..|...|++++|.+++++. .. +|. ..++..++..|...||++.|...+++++...|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778888999999999998888776 11 222 3677778888889999999999998887654322 2
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHHH
Q 003150 755 GYYVLLSNIHADAGQWGNVNKIRRLMK 781 (844)
Q Consensus 755 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 781 (844)
..+..++.+|...|+|++|.+.+.+.-
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346677788888899999988766553
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=1.3e-05 Score=73.21 Aligned_cols=77 Identities=17% Similarity=0.059 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS-GYYVLLSNIH 764 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y 764 (844)
...|..+..+|.+.|++++|+..+++. .+.|+ +..|..+..++...|+++.|...++++++++|+++ .+...|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888888888888888888777 44454 67888899999999999999999999999999988 5566665543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=6.1e-06 Score=70.53 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHH
Q 003150 702 GRLNKALETINSM-PF---APD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKI 776 (844)
Q Consensus 702 g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 776 (844)
|++++|++.+++. .. .|+ ..+|..+...+...|+++.|+..++++++++|+++.++..++.+|...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555444 22 122 244444555555555555555555555555555555555555555555555555554
Q ss_pred HHHH
Q 003150 777 RRLM 780 (844)
Q Consensus 777 ~~~m 780 (844)
+++.
T Consensus 84 ~~~a 87 (117)
T 3k9i_A 84 LLKI 87 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=1.9e-05 Score=82.00 Aligned_cols=147 Identities=7% Similarity=-0.017 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 003150 618 AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDL 697 (844)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 697 (844)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677778888899999999998887 5666542 233445555443321 1367788889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH-HhcCCcchHH
Q 003150 698 FGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIH-ADAGQWGNVN 774 (844)
Q Consensus 698 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~a~ 774 (844)
|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|+.+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887 4445 4678888889999999999999999999999999999999998884 4456777778
Q ss_pred HHHHHHHHcC
Q 003150 775 KIRRLMKERG 784 (844)
Q Consensus 775 ~~~~~m~~~~ 784 (844)
+.++.|-...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8887775443
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=1.9e-05 Score=68.59 Aligned_cols=96 Identities=7% Similarity=0.042 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-------CchHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN-------SGYYV 758 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 758 (844)
...+..++..+...|++++|...+++. ...| +..+|..+...+...|+++.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778899999999999999999987 3334 57888889999999999999999999999998877 77899
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 759 LLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 759 ~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999887653
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.00086 Score=68.00 Aligned_cols=176 Identities=13% Similarity=0.079 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCC-HHHHHHH
Q 003150 602 LDFARTVFDMMQR---KQEAAWNSMIAAYGCHG--HLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQ-VEAGIHY 674 (844)
Q Consensus 602 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-~~~a~~~ 674 (844)
++++..+++.+.. ++..+|+.-.-.+...| ++++++.+++++.+. .| |...|+.-.-.+.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 5677777777654 57788988887788888 489999999999994 45 44677776667777787 6999999
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----
Q 003150 675 FHCMTEEYGIPARMEHYACMVDLFGRA--------------GRLNKALETINSM-PFAP-DAGVWGTLLGACRVH----- 733 (844)
Q Consensus 675 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----- 733 (844)
++.+.+. .+-+...|+....++.+. +.++++++.+.+. ...| |...|+-+-+.+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999874 233566677666666655 5688999998887 4445 468898776666554
Q ss_pred ------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-----hcCCcchHHHHHHHHHHc
Q 003150 734 ------GNVELAEVASSHLFDLDPQNSGYYVLLSNIHA-----DAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 734 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-----~~g~~~~a~~~~~~m~~~ 783 (844)
+.++.++..++++++++|++ .+.+++.+.. ..|..++....+.++.+-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45789999999999999998 4555444332 346666777777777653
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=4.1e-05 Score=69.35 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHH
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNNKIK-PDH----VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYAC 693 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 693 (844)
++..+...|...|++++|+..+++..+..-. ++. .++..+...+...|++++|..+++...+...-.++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------ 84 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD------ 84 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC------
Confidence 4556666666666666666666666542100 111 13444444555555555555555554331100000
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC------CCCchHHHHHHHHHh
Q 003150 694 MVDLFGRAGRLNKALETINSMPFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDP------QNSGYYVLLSNIHAD 766 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~y~~ 766 (844)
.+ ...++..+...+...|+++.|...+++++++.+ .....+..++.+|..
T Consensus 85 -----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 85 -----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 00 023455555556666666666666666655422 113456677888888
Q ss_pred cCCcchHHHHHHHHHH
Q 003150 767 AGQWGNVNKIRRLMKE 782 (844)
Q Consensus 767 ~g~~~~a~~~~~~m~~ 782 (844)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888888887765543
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.91 E-value=0.002 Score=65.60 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=143.1
Q ss_pred cCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcC-CchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHH
Q 003150 498 CGRLDLAYKIFKRMSE---KDVVCWNSMITRYSQNG-KPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEI 573 (844)
Q Consensus 498 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 573 (844)
.+..++|+++++.+.. .+...|+.--..+...| .+++++++++.+.... |
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--P------------------------ 120 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--L------------------------ 120 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--C------------------------
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--C------------------------
Confidence 3444556666665543 24455666555555555 3666666666665533 2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhc-C-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--------HHHHHH
Q 003150 574 HSLMIKDSCRSDNIAESVLIDLYAKC-G-NLDFARTVFDMMQR---KQEAAWNSMIAAYGCHGHLK--------DSLALF 640 (844)
Q Consensus 574 ~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~ 640 (844)
-+..+|+.-...+.+. + +++++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.+
T Consensus 121 ----------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 121 ----------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp ----------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ----------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 2333444433444444 4 67788888888776 45667776655555555555 899999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhhhCC-------HHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCH-------
Q 003150 641 HEMLNNKIKP-DHVTFLAIISACGHAGQ-------VEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRL------- 704 (844)
Q Consensus 641 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~------- 704 (844)
+++++. .| |...|+.....+.+.+. +++++++++.+.. ..| |...|.-+-.++.+.|+-
T Consensus 191 ~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 191 NEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 999884 44 45577776666766665 7888888888866 345 566777777777776653
Q ss_pred -------------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-cCCCCCCchHHHHHH
Q 003150 705 -------------NKALETINSM-PF-------APDAGVWGTLLGACRVHGNVELAEVASSHLF-DLDPQNSGYYVLLSN 762 (844)
Q Consensus 705 -------------~~A~~~~~~~-~~-------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 762 (844)
.+..++..++ +. .+++..+..|+..+...|+.+.|..+++.+. +.+|-...+|...+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 4455555555 21 3567888889999999999999999999987 778877766655543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=2e-05 Score=81.87 Aligned_cols=112 Identities=8% Similarity=-0.020 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVH 733 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 733 (844)
.+..+...+...|++++|+..|+..... .|+.. .+...|+.+++...+.. ..|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 4556667788999999999999988662 34321 23344555665544422 3788888899999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 734 GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 734 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986643
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=2.3e-05 Score=84.88 Aligned_cols=98 Identities=7% Similarity=-0.006 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCCCC
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSM---------PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFD-----LDPQN 753 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 753 (844)
.+++.|+.+|...|++++|..++++. +..|+. .+++.|...|...|++++|+..++++++ +.|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44555566666666666665555544 345553 6788888888888888888888888876 45666
Q ss_pred Cch---HHHHHHHHHhcCCcchHHHHHHHHHHcCCc
Q 003150 754 SGY---YVLLSNIHADAGQWGNVNKIRRLMKERGVQ 786 (844)
Q Consensus 754 ~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 786 (844)
|.+ ...|+.++...|++++|..+++.+++.-.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544 457888889999999999999999875543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.88 E-value=4.8e-05 Score=68.86 Aligned_cols=95 Identities=15% Similarity=0.051 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQR-----KQ----EAAWNSMIAAYGCHGHLKDSLALFHEMLNNKI-KPD---- 651 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd---- 651 (844)
..++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678889999999999999999987664 22 24788899999999999999999999876210 111
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 652 HVTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 652 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
...+..+...+...|++++|..+++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23555666677788888888888777654
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=3e-05 Score=65.14 Aligned_cols=92 Identities=11% Similarity=-0.016 Sum_probs=75.7
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC------CchHH
Q 003150 687 RMEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN------SGYYV 758 (844)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 758 (844)
+...+..++..+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777888888888888888888877 3344 46888888889999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCcchHHHHHH
Q 003150 759 LLSNIHADAGQWGNVNKIRR 778 (844)
Q Consensus 759 ~l~~~y~~~g~~~~a~~~~~ 778 (844)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 89999988888887765443
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=9.7e-05 Score=59.25 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 003150 688 MEHYACMVDLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 765 (844)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 765 (844)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888877776 3334 46778888888999999999999999999999999999999998887
Q ss_pred hcC
Q 003150 766 DAG 768 (844)
Q Consensus 766 ~~g 768 (844)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00029 Score=76.09 Aligned_cols=158 Identities=8% Similarity=-0.039 Sum_probs=117.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCc
Q 003150 625 AAYGCHGHLKDSLALFHEMLNNKIKPD----------------HVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARM 688 (844)
Q Consensus 625 ~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 688 (844)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+++..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345667888888888888877421111 1246778889999999999999999987643333332
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC------C
Q 003150 689 ----EHYACMVDLFGRAGRLNKALETINSM-------PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDL------D 750 (844)
Q Consensus 689 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 750 (844)
...+.+...+...|++++|.++++.. ...+. ..++..|...+...|+++.|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445566667789999999888765 22333 477888999999999999999999988753 2
Q ss_pred CCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 751 PQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 751 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33356788999999999999999999887654
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=9.5e-05 Score=60.82 Aligned_cols=64 Identities=19% Similarity=0.093 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
++..|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888899999999999999999999999999999999999999999999999998886654
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=6e-05 Score=66.56 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=45.7
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcc
Q 003150 705 NKALETINSM-PFAPD-AGVWGTLLGACRVH-----------GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWG 771 (844)
Q Consensus 705 ~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 771 (844)
++|+..+++. .+.|+ ..+|..+..++... |++++|+..++++++++|+++.+...+.. .+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HH
Confidence 3555555554 34443 34555555555544 58999999999999999998766555432 35
Q ss_pred hHHHHHHHHHHc
Q 003150 772 NVNKIRRLMKER 783 (844)
Q Consensus 772 ~a~~~~~~m~~~ 783 (844)
+|.++.-.+...
T Consensus 136 ka~el~~~~~~~ 147 (158)
T 1zu2_A 136 KAPQLHAEAYKQ 147 (158)
T ss_dssp THHHHHHHHHHS
T ss_pred hCHhccCccccc
Confidence 566665555544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00014 Score=61.63 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=52.1
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 707 ALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 707 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|++.+++. ...|+ ...|..+...+...|+++.|+..++++++++|+++..|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444443 33343 566777777777777777777777777777777777777777777777777777777766544
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.58 E-value=0.00018 Score=57.79 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 717 APDAGVWGTLLGACRVHGN---VELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
.+++..|..+..++...++ .+.|...++++++++|+++.+...|++.+...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567888888888765555 69999999999999999999999999999999999999999999987654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=2.8e-05 Score=68.69 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcC-----------CcchHHHHHHHHHHcC
Q 003150 736 VELAEVASSHLFDLDPQNSGYYVLLSNIHADAG-----------QWGNVNKIRRLMKERG 784 (844)
Q Consensus 736 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-----------~~~~a~~~~~~m~~~~ 784 (844)
+++|+..++++++++|+++.+|..|+++|...| ++++|.+.+++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999998776643
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.53 E-value=0.00049 Score=74.68 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQR--K-Q---------------EAAWNSMIAAYGCHGHLKDSLALFHEMLNN 646 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 646 (844)
....+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++.++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 356778889999999999999999997653 2 2 46677777777777777777777777777
Q ss_pred CCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 003150 647 KIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKAL-ETINSM 714 (844)
Q Consensus 647 g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 714 (844)
+.|+. ..|..+..++...|++++|+..|+.+.+ +.| +...+..+..++.+.|+.++|. .++++|
T Consensus 346 -~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 -LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 4666666677777777777777777644 344 4556666666666666666655 334444
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.00019 Score=75.23 Aligned_cols=112 Identities=9% Similarity=-0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPD-AGVWGTLLGACR 731 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~ 731 (844)
..+..+...+...|++++|++.|++..+.. |. . ......+++. ...|. ..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~------~----~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG------S----RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH------H----HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc------C----ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888888776520 00 0 0001111111 12233 478888999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 732 VHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 732 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
..|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999877653
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.37 E-value=0.0025 Score=70.76 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhhCC----------HHHHHHHHHHhHhhcCCCC-CchHHHHHHHH
Q 003150 630 HGHLKDSLALFHEMLNNKIKPDHV-TFLAIISACGHAGQ----------VEAGIHYFHCMTEEYGIPA-RMEHYACMVDL 697 (844)
Q Consensus 630 ~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 697 (844)
....++|++.+++++. +.|+.. .|+.--.++.+.|+ ++++++.++.+.+. .| +...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3456789999999999 678775 56655556666666 99999999999873 45 67788888888
Q ss_pred HHhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhc-----
Q 003150 698 FGRAG--RLNKALETINSM-PFAP-DAGVWGTLLGACRVHG-NVELAEVASSHLFDLDPQNSGYYVLLSNIHADA----- 767 (844)
Q Consensus 698 ~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----- 767 (844)
+.+.| ++++|+++++++ ...| +..+|+.-.......| ..+.+...++++++.+|+|.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 89999 779999999999 4455 4789999888888888 899999999999999999999999999998874
Q ss_pred ---------CCcchHHHHHHHHH
Q 003150 768 ---------GQWGNVNKIRRLMK 781 (844)
Q Consensus 768 ---------g~~~~a~~~~~~m~ 781 (844)
++++++.+..+...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 44567777665443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00045 Score=57.69 Aligned_cols=66 Identities=12% Similarity=-0.027 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 718 PDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 718 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
++...|..+...+...|+++.|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999999999999999999999999999999999999877653
No 204
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.29 E-value=0.0011 Score=68.46 Aligned_cols=431 Identities=10% Similarity=0.021 Sum_probs=234.4
Q ss_pred cchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhcc
Q 003150 182 VFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVE 261 (844)
Q Consensus 182 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 261 (844)
+.+|+.|-.++.+.|.+.+|.+.|=+ ..|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence 44555555565555555555544422 2344455556666666666666666555444432222 2233455566655
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhhHHHHHHhcCCChhHHHHHhccCCC------------------------CCccch
Q 003150 262 AMTDFGTQVHGVVVSVGLEFDPQVANSLLSMYSKSGRLYDALKLFELMPQ------------------------INLVTW 317 (844)
Q Consensus 262 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~ 317 (844)
+++.+-+.++. .|+..-...+-+-|...|.++.|.-+|..++. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 55544333322 24444445555555556666666665555432 467899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhccccchhhHHHHHHHHHhCC-CCchHHHHHHHHHhhh
Q 003150 318 NGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEVASIKQGKEIHGYIIRNGV-PLDAFLKSALIDIYFK 396 (844)
Q Consensus 318 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~ 396 (844)
-.+-.+|+..+.+.-|.-.--.+. ....-...++..|-..|.+++-..+++.-. |. .....+++-|.-.|+|
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHh
Confidence 999999999999887766554443 233456778888999999999988888765 33 3467788888888888
Q ss_pred CCCHHHHHHHHH----hCCCC-------ChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccc
Q 003150 397 CRDVKMACKVFK----ENTAA-------DVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNTVTLSSILPACADLAA 465 (844)
Q Consensus 397 ~g~~~~A~~~~~----~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 465 (844)
-. .++-++-++ ++.-| ....|.-++-.|.+...++.|.... .+. .|+...-........+..+
T Consensus 276 Y~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KVaN 349 (624)
T 3lvg_A 276 FK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN 349 (624)
T ss_dssp SC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGCSC
T ss_pred cC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHcch
Confidence 63 333333332 22222 4467999999999999888775432 111 0000101111111122222
Q ss_pred hHHHHHHHHHHHHhCCCCCccchHHHHH-------------HHHhcCCHHHHHHHHHhcCCCChHhH-HHHHHHHHHcCC
Q 003150 466 LKLGKELHCYILKNGLDGKCHVGSAITD-------------MYAKCGRLDLAYKIFKRMSEKDVVCW-NSMITRYSQNGK 531 (844)
Q Consensus 466 ~~~a~~~~~~~~~~g~~~~~~~~~~li~-------------~~~~~g~~~~A~~~~~~m~~~~~~~~-~~li~~~~~~g~ 531 (844)
.+.-.+..... ++..+...+-|+. .+.|.|++.-....+......|...- .++-..|....+
T Consensus 350 ~EiyYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEED 425 (624)
T 3lvg_A 350 VELYYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED 425 (624)
T ss_dssp SHHHHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence 22111111111 2222223334443 44455555444444444444444433 345555666666
Q ss_pred chHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 532 PEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDM 611 (844)
Q Consensus 532 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 611 (844)
++.- +.-.+.--.-|.. ..|.++ .++ +-...-..-...|.+.++++++.++.++
T Consensus 426 y~~L----R~SId~ydNFD~i---------------~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk 479 (624)
T 3lvg_A 426 YQAL----RTSIDAYDNFDNI---------------SLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK 479 (624)
T ss_dssp CHHH----HHTTSSCCCSCTT---------------HHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST
T ss_pred HHHH----HHHHHHhccccHH---------------HHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 5422 2222222222222 222221 111 1222333445667888888888765442
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHH
Q 003150 612 MQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHY 674 (844)
Q Consensus 612 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 674 (844)
=. .|.-.|...+..|+.+-|.++++-..+.| +...|...+-.|...=+.|.++++
T Consensus 480 Dk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 480 DS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 11 12223344567788888888888888755 456788888888888777777664
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.24 E-value=0.0011 Score=71.60 Aligned_cols=95 Identities=12% Similarity=-0.048 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhHhhc--CCCC----CchHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMTEEY--GIPA----RMEHYACMVDLFGRAGRLNKALETINSM---------PFAP 718 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p 718 (844)
+++.|..+|...|++++|+.++++..+.+ -+.| ...+++.|+.+|...|++++|+.++++. +-.|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 45555556666666666666655543311 1122 1345666666666666666666666554 2344
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 719 DAG-VWGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 719 ~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
+.. +...|..+....|.++.|+..+.++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 333333444466777778777776643
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.0013 Score=57.77 Aligned_cols=110 Identities=12% Similarity=-0.035 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCCHHH
Q 003150 631 GHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGR----AGRLNK 706 (844)
Q Consensus 631 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 706 (844)
+++++|+.+|++..+.| .|+.. |-..+...+.+++|.++|+...+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35666777777777665 34333 444455556666677777666552 244555556666655 556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcC
Q 003150 707 ALETINSMPFAPDAGVWGTLLGACRV----HGNVELAEVASSHLFDL 749 (844)
Q Consensus 707 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 749 (844)
|++++++.--..++..+..|...+.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666655222344445555555554 45566666666555554
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.00042 Score=73.89 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC-----CCCC---CchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDL-----DPQN---SGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.+++.|..+|...|++++|+..+++++++ .|++ ...+..|+.+|...|++++|..++++..+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55666666677777777777777766642 3443 44577788888888888888887776544
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.0071 Score=61.47 Aligned_cols=138 Identities=15% Similarity=0.057 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh---hC-----CHHHHHHHHHHhHh
Q 003150 615 KQEAAWNSMIAAYG--CHG---HLKDSLALFHEMLNNKIKPDHV-TFLAIISACGH---AG-----QVEAGIHYFHCMTE 680 (844)
Q Consensus 615 ~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~---~g-----~~~~a~~~~~~~~~ 680 (844)
.+...|...+.+.. ..+ ...+|..+|++.++ ..|+.. .+..+.-++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666666665543 333 35789999999998 688864 34333333320 00 11111111211111
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 681 EYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 681 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
....+.++.+|..+.-.+...|++++|...++++ .+.|+...|..+...+...|+.++|...+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1112334556666655555566666666666666 3345655555555556666666666666666666666554
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.13 E-value=0.0027 Score=55.63 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=94.7
Q ss_pred hCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003150 665 AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRV----HGNVELAE 740 (844)
Q Consensus 665 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 740 (844)
.+++++|.++|+...+. + .|. .. |..+|...+..++|++++++.--..++..+..|...+.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45789999999999873 4 333 33 888898889999999999998334677888888888877 78999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHh----cCCcchHHHHHHHHHHcCC
Q 003150 741 VASSHLFDLDPQNSGYYVLLSNIHAD----AGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 785 (844)
..++++.+. .++.++..|+.+|.. .++.++|.+.+++.-+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999887 678899999999999 8999999999998877664
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.06 E-value=0.0011 Score=52.75 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 720 AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 720 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...|..+...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4678888888999999999999999999999999999999999999999999999999877653
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.00 E-value=0.0016 Score=54.88 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=51.2
Q ss_pred HHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003150 671 GIHYFHCMTEEYGIPA-RMEHYACMVDLFGRAGRLNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLF 747 (844)
Q Consensus 671 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 747 (844)
|+..|+...+ ..| ++..+..++..|.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555433 233 4556666666666777777777666665 33343 5667777777777788888888888877
Q ss_pred cCCCCC
Q 003150 748 DLDPQN 753 (844)
Q Consensus 748 ~~~p~~ 753 (844)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.0073 Score=64.28 Aligned_cols=72 Identities=18% Similarity=-0.021 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCCCCC
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM---------PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFD-----LDPQNS 754 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 754 (844)
+++.++.+|...|++++|+.++++. +..|+. .+++.|...+...|++++|+..++++++ +.|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444445555555555555444443 344553 6677777888888888888888887775 467776
Q ss_pred chHHHHH
Q 003150 755 GYYVLLS 761 (844)
Q Consensus 755 ~~~~~l~ 761 (844)
.+-..+.
T Consensus 411 ~~~~~~~ 417 (429)
T 3qwp_A 411 LIEDLIL 417 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.85 E-value=0.004 Score=66.11 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=28.6
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCCCCCchHH
Q 003150 716 FAPDA-GVWGTLLGACRVHGNVELAEVASSHLFD-----LDPQNSGYYV 758 (844)
Q Consensus 716 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 758 (844)
..|+. .+++.|...|..+|++++|+..++++++ +.|++|.+-.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 34553 5677777777777777777777777765 3566654433
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.83 E-value=0.0078 Score=62.28 Aligned_cols=303 Identities=12% Similarity=0.076 Sum_probs=191.8
Q ss_pred CChhhHhHHHHHHHhcCChhhHhhhccCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 003150 79 DNAALGAKILGMYVLCGGFIDAGNMFPRLDLATSLPWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDNHTFPSVMKACS 158 (844)
Q Consensus 79 ~~~~~~~~l~~~~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 158 (844)
..+.+|+.|..++.+.+.+.+|...|-+-. |...|..+|.+..+.|.+++-+..+...++..-.| ..=+.|+-+++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 467889999999999999999999886544 55567889999999999999998887776654434 34468889999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCC------------------------CCcc
Q 003150 159 ALGNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQ------------------------RDCV 214 (844)
Q Consensus 159 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~ 214 (844)
+.+++.+-+.++ -.|+..-...+-+-+...|.++.|.-+|..++. .++-
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 988876533322 135555556666677777778887777776653 3566
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHHHHHhcCC-CChhhhhHHHHHH
Q 003150 215 LWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGVVVSVGLE-FDPQVANSLLSMY 293 (844)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~ 293 (844)
+|-.+-.+|...+.+.-|.-.--.+.- .|| -...++..|-..|.+++...+++.-. |++ ....+++-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 899999999999988776554444331 111 12234555677787777777776554 332 4566777777788
Q ss_pred hcCCChhHHHHHhccCCC-----------CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccccccchhhhhcc
Q 003150 294 SKSGRLYDALKLFELMPQ-----------INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEITFSSFLPSICEV 362 (844)
Q Consensus 294 ~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 362 (844)
+|- +.++-.+-++..-. .....|.-++-.|.+-..++.|... |.+. .|+...-..+.....+.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGC
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHc
Confidence 876 34444444433221 2345788888888888888766543 3221 12233333344444455
Q ss_pred ccchhhHHHHHHHHHhCCCCchHHHHHHHHHhhhCCCHHHHHHHHHh
Q 003150 363 ASIKQGKEIHGYIIRNGVPLDAFLKSALIDIYFKCRDVKMACKVFKE 409 (844)
Q Consensus 363 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 409 (844)
.+.+.--+..... +.-.+...+-|+......=|...+.++|++
T Consensus 348 aN~EiyYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k 390 (624)
T 3lvg_A 348 ANVELYYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 390 (624)
T ss_dssp SCSHHHHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHT
T ss_pred chHHHHHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHh
Confidence 5544333333322 233334455555555555555566666655
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0042 Score=50.38 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchH
Q 003150 694 MVDLFGRAGRLNKALETINSM-PFAPD-AG-VWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYY 757 (844)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 757 (844)
.+..+.+.|++++|.+.+++. ...|+ .. .|..+...+...|+++.|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777777777777766 33443 45 777777777788888888888888888888887766
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0011 Score=70.45 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC-----CCCC---CchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFDL-----DPQN---SGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.+++.|..+|...|++++|+..+++++++ .|++ ...+..|+.+|...|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 66777888888888888888888877753 3444 55688999999999999999998887654
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.63 E-value=0.0055 Score=49.95 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 616 QEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
+...|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|++.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555666666666666666666666665 33433 3555555566666666666666665544
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.61 E-value=0.012 Score=59.67 Aligned_cols=132 Identities=12% Similarity=0.008 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHH--hhh---CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHH----hcC-------CHHHHHHH
Q 003150 648 IKPDHVTFLAIISAC--GHA---GQVEAGIHYFHCMTEEYGIPAR-MEHYACMVDLFG----RAG-------RLNKALET 710 (844)
Q Consensus 648 ~~pd~~t~~~ll~a~--~~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~----~~g-------~~~~A~~~ 710 (844)
.+.+...|...+.+. ... ....+|+.+|+++.+ +.|+ ...|..+.-+|. ..+ .+.+|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 345556777777654 333 345789999999977 5775 445554433332 111 12233333
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 711 INSMPF-APDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 711 ~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
...++. ..++.+|.++...+...|+++.|...++++++++|+ ...|..++.++...|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 333333 445788888887788889999999999999999975 677899999999999999999988765543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.55 E-value=0.0037 Score=50.77 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=53.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 726 LLGACRVHGNVELAEVASSHLFDLDPQNSG-YYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 726 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
....+...|+++.|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445677899999999999999999999999 99999999999999999999999876543
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.088 Score=61.77 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=24.3
Q ss_pred HhcCCHHHHHH-HHHhcCCCChHhHHHHHHHHHHcCCchHHHHHH
Q 003150 496 AKCGRLDLAYK-IFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLF 539 (844)
Q Consensus 496 ~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 539 (844)
...+++++|.+ ++..++.+ .....++..+.+.|..++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 34677777776 55443301 12256666667777777777654
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.27 E-value=0.25 Score=41.18 Aligned_cols=140 Identities=9% Similarity=0.065 Sum_probs=92.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHH
Q 003150 628 GCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 628 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 707 (844)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+.+.+.+ +|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 4457777777777777652 2233444444333333444455555666544333333 4444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCc
Q 003150 708 LETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQ 786 (844)
Q Consensus 708 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 786 (844)
..-+-.++ .+.....-.+.....+|+.++-..++..++..+|-+|+..+-++++|.+.|+..+|.+++++.=++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444442 223334455677788999999999999988888888999999999999999999999999999889986
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.13 Score=60.33 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=72.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHH
Q 003150 494 MYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEI 573 (844)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 573 (844)
.....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 356778999998887766 3567899999999999999999999988743 23333334445555554444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 003150 574 HSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHE 642 (844)
Q Consensus 574 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 642 (844)
-+.....|- ++.-..+|.+.|++++|.+++. +.+++++|..+-++
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 444443331 2333445556666666666543 44567777666554
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.25 E-value=0.017 Score=47.43 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 003150 690 HYACMVDLFGRAGRLNKALETINSM-----P----FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLL 760 (844)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 760 (844)
-+-.|+..+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445566666666666666665554 0 123457889999999999999999999999999999998775555
Q ss_pred H
Q 003150 761 S 761 (844)
Q Consensus 761 ~ 761 (844)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.018 Score=50.13 Aligned_cols=75 Identities=15% Similarity=-0.008 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHH
Q 003150 686 ARMEHYACMVDLFGRAG---RLNKALETINSM-PFA-P--DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 686 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
++.++...+..++.+++ +.++++.++++. ... | ....+..|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45555555555666655 444666555555 222 4 2355667777889999999999999999999999876655
Q ss_pred HH
Q 003150 759 LL 760 (844)
Q Consensus 759 ~l 760 (844)
+.
T Consensus 110 Lk 111 (152)
T 1pc2_A 110 LE 111 (152)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.15 E-value=0.018 Score=50.21 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCC-C-CCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCCccCCCe
Q 003150 717 APDAGVWGTLLGACRVHG---NVELAEVASSHLFDLD-P-QNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGVQKIPGY 791 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~ 791 (844)
.++..+...+..++.+.+ +.++|+..++.+++.+ | ++...++.|+-.|++.|++++|.+.++.+.+. +|
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----eP-- 102 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----EP-- 102 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----CT--
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CC--
Confidence 478888888999988887 6779999999999998 7 56888999999999999999999999988653 22
Q ss_pred eEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHhcCccc
Q 003150 792 SWIELNNITHLFVAADESHSESAQMLNILLPELEKEGYIP 831 (844)
Q Consensus 792 s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 831 (844)
.|++.......+...+.+.|++-
T Consensus 103 -----------------~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 103 -----------------QNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHTTCCC
T ss_pred -----------------CCHHHHHHHHHHHHHHHHhhHHH
Confidence 24555555677778888888753
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.13 E-value=0.013 Score=56.98 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=52.1
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHhc-CCcchH
Q 003150 705 NKALETINSM-PFAPD---AGVWGTLLGACRV-----HGNVELAEVASSHLFDLDPQN-SGYYVLLSNIHADA-GQWGNV 773 (844)
Q Consensus 705 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~a 773 (844)
.+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.++++++++|+. ...++.++..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 33454 2455555555555 377777777777777777754 77777777777663 777777
Q ss_pred HHHHHHHHHcCCccCCC
Q 003150 774 NKIRRLMKERGVQKIPG 790 (844)
Q Consensus 774 ~~~~~~m~~~~~~~~~~ 790 (844)
.+.+++......+..|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777666555443344
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.05 E-value=0.026 Score=45.00 Aligned_cols=69 Identities=9% Similarity=0.008 Sum_probs=55.2
Q ss_pred CCCchHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 685 PARMEHYACMVDLFGRAGR---LNKALETINSM-PFAPD-AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 685 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
++++..+..+..++...++ .++|..++++. ...|+ +..+..+...+...|+++.|+..++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3467788888888865554 68898888887 55665 5677777788899999999999999999999983
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.26 Score=43.98 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHH
Q 003150 593 IDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGI 672 (844)
Q Consensus 593 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 672 (844)
.+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+..+ |..+.--|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556789999998888776 4677899999999999999999998887644 344444566677776655
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003150 673 HYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL 746 (844)
Q Consensus 673 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 746 (844)
++-+..... .-++.....+.-.|+++++.+++.+.+.-|.+. -....+|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 554443331 124455556667889999999888875433322 2234577788888777655
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.39 E-value=3.8 Score=45.31 Aligned_cols=124 Identities=8% Similarity=0.081 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHH
Q 003150 631 GHLKDSLALFHEMLNNK-IKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 707 (844)
Q Consensus 631 g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 707 (844)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886543 322222 222333344445535566666666433 223333344445555678999999
Q ss_pred HHHHHhCCCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 003150 708 LETINSMPFAP-DAGVWGT-LLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 708 ~~~~~~~~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 761 (844)
...|+.|+-.+ +..-|.- +..+....|+.+.|..+++++.+ + .++|-.|+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 99999995433 2222222 23356678999999999999875 3 35676664
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.34 E-value=0.11 Score=50.40 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHhcCCCCh--HHHHHHHH-HHHhc--C------ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhh
Q 003150 599 CGNLDFARTVFDMMQRKQE--AAWNSMIA-AYGCH--G------HLKDSLALFHEMLNNKIKPD---HVTFLAIISACGH 664 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g------~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~ 664 (844)
.|+..+-.+.+.+....++ ..|..++. ++... | ...+|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444445555543333 34665554 23332 2 24566777777777 6676 2456666666666
Q ss_pred h-----CCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 003150 665 A-----GQVEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFGRA-GRLNKALETINSM 714 (844)
Q Consensus 665 ~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 714 (844)
. |+.++|.++|++..+ +.| ++.++....+.+++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 777777777777755 355 266666666666663 6666666666665
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.34 E-value=0.39 Score=40.11 Aligned_cols=92 Identities=13% Similarity=-0.021 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-CC--HHHHHHHHHHHHhcCCHHHHH
Q 003150 668 VEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNK---ALETINSM-PFA-PD--AGVWGTLLGACRVHGNVELAE 740 (844)
Q Consensus 668 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p~--~~~~~~ll~~~~~~g~~~~a~ 740 (844)
+..+.+.|...... + .|+..+-..+..++.++....+ ++.+++.. ... |+ -.....|.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444331 2 2555555556666666665544 66666665 222 31 244556677899999999999
Q ss_pred HHHHHhhcCCCCCCchHHHHH
Q 003150 741 VASSHLFDLDPQNSGYYVLLS 761 (844)
Q Consensus 741 ~~~~~~~~~~p~~~~~~~~l~ 761 (844)
+..+.+++.+|+|..+..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999876655543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.84 E-value=0.13 Score=44.10 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhhhCCH------HHHHHHHHHhHhhcCCCCCc-hHHHHHHH------HHHhcCCHHHHHHHHHhC-CC
Q 003150 651 DHVTFLAIISACGHAGQV------EAGIHYFHCMTEEYGIPARM-EHYACMVD------LFGRAGRLNKALETINSM-PF 716 (844)
Q Consensus 651 d~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~-~~ 716 (844)
|..+|-..+......|+. ++-+++|++... .++|+. ..|...|. .+...++.++|.++|+.+ ..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345777777777777888 788888888777 567742 11222111 223346777777777776 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 003150 717 AP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN 753 (844)
Q Consensus 717 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 753 (844)
.. =+.+|-....--.++|+++.|..++.+++.+.|..
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 11 16777777777777888888888888888877765
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.63 E-value=0.26 Score=40.03 Aligned_cols=64 Identities=11% Similarity=-0.051 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC-------CCCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 719 DAGVWGTLLGACRVHGNVELAEVASSHLFDLD-------PQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 719 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
++.-...+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|....++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556678888999999999999999998753 34466799999999999999999999887754
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.58 E-value=5.4 Score=35.55 Aligned_cols=127 Identities=11% Similarity=0.062 Sum_probs=82.4
Q ss_pred hchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 003150 562 ANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFH 641 (844)
Q Consensus 562 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 641 (844)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|...|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 3456777777766554 3577888999999999999999999988763 4455556677788777666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003150 642 EMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP 715 (844)
Q Consensus 642 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 715 (844)
.....|- ++.-...+...|+++++.++|.+..+ -|. -+-.....|.-+.|.++.++++
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r----~~e------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS----LPL------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC----HHH------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC----hHH------HHHHHHHcCcHHHHHHHHHHhC
Confidence 5555441 23334455667999999888866522 121 1111222456677777777763
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.58 E-value=0.3 Score=55.02 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 727 LGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 727 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
..-|...|+++.|+.+++++...-|++...|..|+.+|...|+|+.|.-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445778899999999999999999999999999999999999999999988765
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.47 E-value=0.76 Score=38.37 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhcCC-C-CCCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 717 APDAGVWGTLLGACRVHGNVEL---AEVASSHLFDLD-P-QNSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.|+..+-..+..++...++... ++.+++.++..+ | ..-...+.|+-.|++.|++++|.+..+.+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3777777778888877776554 999999999877 5 4566788999999999999999999998865
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.45 E-value=0.79 Score=39.27 Aligned_cols=102 Identities=10% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HhhhCCHHHHHHHHHHhHh
Q 003150 614 RKQEAAWNSMIAAYGCHGHL------KDSLALFHEMLNNKIKPDHV----TFLAIISA---CGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 614 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----t~~~ll~a---~~~~g~~~~a~~~~~~~~~ 680 (844)
..|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|..+.-- +...+++++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45788999988888888998 8888999998885 777652 33333332 3345788899999999977
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 003150 681 EYGIPARMEHYACMVDLFGRAGRLNKALETINSM-PFAP 718 (844)
Q Consensus 681 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 718 (844)
. +-+- ...|-.....-.|.|++++|.+++.+. +..|
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 4 2222 667777778888999999999998877 4334
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.43 E-value=4.3 Score=34.50 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=47.5
Q ss_pred CCCchHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHH
Q 003150 685 PARMEHYACMVDLFGRAGRLN---KALETINSM-PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYV 758 (844)
Q Consensus 685 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 758 (844)
.|+..+--.+..++.++...+ +++.+++.. ...|+ -...--|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456666666677777776543 566666665 22332 234445556677788888888888888888887754443
Q ss_pred H
Q 003150 759 L 759 (844)
Q Consensus 759 ~ 759 (844)
+
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.08 E-value=4.4 Score=34.43 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHhhhCC---HHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 003150 649 KPDHVTFLAIISACGHAGQ---VEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFGRAGRLNKALETINSM-PFAPDA 720 (844)
Q Consensus 649 ~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 720 (844)
.|+..|-..+..++.++.. ..+|+.+++.+.+. .| ..+..--|.-++.|.|++++|.++.+.+ ...|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4555555555555655553 44677777777653 23 2444455666778888888888887776 556654
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.37 E-value=48 Score=38.30 Aligned_cols=255 Identities=12% Similarity=0.083 Sum_probs=133.8
Q ss_pred hhhCCCHHHHHHHHHhCCC----CCh--hhHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCC---hhhHHHHHHHHhc
Q 003150 394 YFKCRDVKMACKVFKENTA----ADV--VMFTAMISGYVLNGISHEALEKFRWLIQEKI--IPN---TVTLSSILPACAD 462 (844)
Q Consensus 394 ~~~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t~~~ll~a~~~ 462 (844)
....|+.+++..+++.... .+. ..-..+.-|....|..++++.++.......- .-+ ...-....-+++.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566888888888887543 222 2333444566777777778887777655321 001 1111111112222
Q ss_pred --ccc-hHHHHHHHHHHHHhCCCCCc--cchHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHhHHHHHHHHHHcCCchH
Q 003150 463 --LAA-LKLGKELHCYILKNGLDGKC--HVGSAITDMYAKCGRLDLAYKIFKRMSE--KD-VVCWNSMITRYSQNGKPEE 534 (844)
Q Consensus 463 --~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~ 534 (844)
.|. -+.+...+..++...-. .. ...-+|.-.|.-.|+.+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222 12333333333332110 00 1111333344556777777777765433 22 2223344445667889888
Q ss_pred HHHHHHHHHHCCCCCChHHHH---HHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 535 AIDLFRQMAIEGVKHDCMSLS---AALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDM 611 (844)
Q Consensus 535 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 611 (844)
+..+++.+.... .| ..-|. ++.-+|+..|+.....+++..+.... ..++.-...+.-+..-.|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888887631 22 22232 23346778889888887888887642 22333222333334446777777777775
Q ss_pred cCC-CChHHHHH--HHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 003150 612 MQR-KQEAAWNS--MIAAYGCHGHL-KDSLALFHEMLNNKIKPDHVTF 655 (844)
Q Consensus 612 ~~~-~~~~~~~~--li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~t~ 655 (844)
+.+ .|..+-.. +.-|....|.. .+|+.++..+.. .+|..+-
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 543 34443333 33344444543 678889988875 4555443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.86 E-value=3.7 Score=34.40 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 003150 686 ARMEHYACMVDLFGRAGRL---NKALETINSM-PFAPD--AGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVL 759 (844)
Q Consensus 686 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 759 (844)
|++.+--.+..++.++... .+++.++++. ...|+ -..+--|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3444444445555555543 3444554444 12242 3556667778899999999999999999999998655444
Q ss_pred H
Q 003150 760 L 760 (844)
Q Consensus 760 l 760 (844)
.
T Consensus 118 k 118 (134)
T 3o48_A 118 K 118 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.72 E-value=11 Score=31.63 Aligned_cols=85 Identities=11% Similarity=-0.066 Sum_probs=62.4
Q ss_pred ccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCchHHHHHHHH
Q 003150 194 ENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAVEAMTDFGTQVHGV 273 (844)
Q Consensus 194 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 273 (844)
.||++......+-.+. .+..-.+..+..+...|+-++-.+++..+.. +.+|++.....+-.+|.+.|+..++..++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4566666665555543 3444557778888889998888888888543 3477888888888899999999999888888
Q ss_pred HHHhcCC
Q 003150 274 VVSVGLE 280 (844)
Q Consensus 274 ~~~~g~~ 280 (844)
.-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8887754
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.87 E-value=3.6 Score=39.30 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=28.3
Q ss_pred HhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 662 CGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 662 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
..+.|.+++|+.....-.+. -+-|...-..++.+||-.|+|++|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44556666666655555442 2225555566666666666666666555444
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.76 E-value=57 Score=37.65 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=19.4
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHH
Q 003150 316 TWNGMIAGHVQNGFMNEALDLFRKMI 341 (844)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~~~~~m~ 341 (844)
-|..++.+..+.++.+.+.++|.++.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667777777788888888887775
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.54 E-value=39 Score=35.56 Aligned_cols=96 Identities=8% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhhhCCHHHHHHHHHHhHhh-cCCCCC----c
Q 003150 619 AWNSMIAAYGCHGHLKDSLALFHEMLNN--KIKPDH---VTFLAIISACGHAGQVEAGIHYFHCMTEE-YGIPAR----M 688 (844)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~----~ 688 (844)
....|...|...|++.+|..++.++... |..+.. ..+...+..|...+++..|..+++++... ....+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778889999999999999988642 322222 24555667899999999999999887532 122222 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 689 EHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
..|.+++..+...+++.+|...|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56789999999999999998776665
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.40 E-value=6.3 Score=30.99 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 706 KALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 706 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
+++.-+-.+.+.|++.+..+.|.||++-+|+..|.++++-+-..-.+...+|-.+. .++.-.+.+.|+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI 98 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGI 98 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCC
Confidence 34444444578999999999999999999999999999988665544455554442 345555666666
Q ss_pred c
Q 003150 786 Q 786 (844)
Q Consensus 786 ~ 786 (844)
.
T Consensus 99 ~ 99 (109)
T 1v54_E 99 S 99 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.66 E-value=5.8 Score=31.00 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=64.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 003150 161 GNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMR 240 (844)
Q Consensus 161 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (844)
...++|..|-+.+...|. ...+--.-+..+...|++++|..+.+...-||..+|-+|-. .+.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778888888877663 33333333456778999999999999999999999988765 46788888888887887
Q ss_pred hCCCCCChhhHH
Q 003150 241 ISETKPNSVTFA 252 (844)
Q Consensus 241 ~~g~~p~~~t~~ 252 (844)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444553
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.61 E-value=34 Score=34.05 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=37.8
Q ss_pred hHHHHHHhcCCChhHHHHHhccCCCCCccchHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCccccccchhhhhc
Q 003150 287 NSLLSMYSKSGRLYDALKLFELMPQINLVTWNGMIAGHVQNGFMNEALDLF----RKMILSGVKPDEITFSSFLPSICE 361 (844)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 361 (844)
.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4555567778888888877532 223455666665555544 444556777776665555554443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.49 E-value=26 Score=36.07 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhchhchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CChHHH---
Q 003150 552 MSLSAALSACANLHALHYGKEIHSLMIKD-SCRS---DNIAESVLIDLYAKC-GNLDFARTVFDMMQR---KQEAAW--- 620 (844)
Q Consensus 552 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~---~~~~~~--- 620 (844)
.....+...+.+.|+.++..+++...... +.-+ .......+++.+... |..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666554322 1111 223344566666553 223333333332221 111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcC-CCCCchH-
Q 003150 621 ---NSMIAAYGCHGHLKDSLALFHEMLNNKIKPDH-----VTFLAIISACGHAGQVEAGIHYFHCMTEEYG-IPARMEH- 690 (844)
Q Consensus 621 ---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~- 690 (844)
..++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...|++..+..++.......+ +.|++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14566677777777777777776652111121 1233344456667777777777766644321 2133221
Q ss_pred ---HHHHHHHHH-hcCCHHHHHHHHHh
Q 003150 691 ---YACMVDLFG-RAGRLNKALETINS 713 (844)
Q Consensus 691 ---~~~l~~~~~-~~g~~~~A~~~~~~ 713 (844)
..+-+-++. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 222233444 56777777665544
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.42 E-value=35 Score=33.99 Aligned_cols=166 Identities=16% Similarity=0.125 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHH----HHHHHCCCCCChHHHHHHHHHHhch
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLF----RQMAIEGVKHDCMSLSAALSACANL 564 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 564 (844)
.++..-|.+.+++++|.+++-.- ...+.+.|+...|.++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 45556688999999998876432 23455666665554443 4445567788887777777766554
Q ss_pred hchH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHH
Q 003150 565 HALH-YGKEIHSLMI----KDS--CRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSL 637 (844)
Q Consensus 565 ~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 637 (844)
..-+ .=..+.+.++ +.| -.-|+.....+...|.+.+++.+|+.-|-.-.++....+..|+.-+...+...
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--- 184 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH--- 184 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG---
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc---
Confidence 4311 1122333332 333 33467788889999999999999999884222222355655554433332211
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHh
Q 003150 638 ALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE 680 (844)
Q Consensus 638 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 680 (844)
.+|...-..++. |...+++..|...|+...+
T Consensus 185 -----------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -----------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122223333333 4556788888887766654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.16 E-value=5.5 Score=31.08 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=64.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHhhccCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 003150 161 GNLRFGKLVHDMIWLMGCEIDVFVGSSLVKLYTENRCIDEARYVFDKMSQRDCVLWNVMLNGYVTCGESDNATRAFKEMR 240 (844)
Q Consensus 161 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (844)
...++|..|-+.+...|. ...+--.-+..+...|++++|..+.+...-||..+|-+|-. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888888877663 33333333456778999999999999999999999988755 57888888888888888
Q ss_pred hCCCCCChhhHH
Q 003150 241 ISETKPNSVTFA 252 (844)
Q Consensus 241 ~~g~~p~~~t~~ 252 (844)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 45554553
No 252
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.91 E-value=27 Score=33.60 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=25.0
Q ss_pred HHHhcCCChhHHHHHhccCC-C---CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003150 291 SMYSKSGRLYDALKLFELMP-Q---INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPD 348 (844)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 348 (844)
...+..|+.+-...+++... . .|...++.+..+ +..+......++++.+.+.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 33444555555555554321 1 222233333322 334444444555555555555544
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.53 E-value=8.1 Score=43.58 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHHh
Q 003150 626 AYGCHGHLKDSLALFHEMLNNKIKPDH-VTFLAIISACGHAGQVEAGIHYFHCM 678 (844)
Q Consensus 626 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 678 (844)
-+...|+++-|+++-++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566777788888777777 56665 47787888888888888887777776
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.39 E-value=6.5 Score=34.42 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 654 TFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 654 t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
++..+..++...|++..|...|+...
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444555666666666666666543
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.36 E-value=40 Score=33.23 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHH----HHHHHHCCCCCChHHHHHHHHHHhch
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDL----FRQMAIEGVKHDCMSLSAALSACANL 564 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~ 564 (844)
.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 45556688899999998886542 2345666776665554 44455667888887777777766543
Q ss_pred hchH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc---CChH
Q 003150 565 HALH-YGKEIHSLMI----KDS--CRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCH---GHLK 634 (844)
Q Consensus 565 ~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 634 (844)
..-+ .=..+.+.++ +.| -.-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 2111 1123333333 332 2247788889999999999999999987633222455555554443333 3322
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhh
Q 003150 635 DSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEE 681 (844)
Q Consensus 635 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 681 (844)
++ |...-..++ -+...|++..|...|+...+.
T Consensus 186 e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 22 111222223 244568899999988877653
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.27 E-value=15 Score=28.71 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=32.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003150 595 LYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF 655 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 655 (844)
.+...|++++|..+.+...-||.+.|-+|-. .+.|-.+++...+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445566666666666666666666655543 34555555555555555544 4444443
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.81 E-value=7.4 Score=34.08 Aligned_cols=123 Identities=10% Similarity=-0.028 Sum_probs=63.3
Q ss_pred CCCCCCHH--HHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC-------chHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 003150 646 NKIKPDHV--TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR-------MEHYACMVDLFGRAGRLNKALETINSM-- 714 (844)
Q Consensus 646 ~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 714 (844)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+ ..++..+++++...|++.+|...+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45666554 3334455677778888887776665543333443 235566677777777777777777664
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHH
Q 003150 715 --PFAPDA-GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLM 780 (844)
Q Consensus 715 --~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 780 (844)
..-|.. ....++ . ..... ..-..+ +.+.+.-..++.+|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~~~~~-~---~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-G---NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccccc-c---ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 011000 0 00000 000111 334456678999999999999999998743
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.80 E-value=44 Score=35.15 Aligned_cols=93 Identities=9% Similarity=0.072 Sum_probs=59.7
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHhHhh-cCCCCC---chHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCH----HH
Q 003150 656 LAIISACGHAGQVEAGIHYFHCMTEE-YGIPAR---MEHYACMVDLFGRAGRLNKALETINSM-----PFAPDA----GV 722 (844)
Q Consensus 656 ~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~----~~ 722 (844)
..|...+...|++.+|.+++..+..+ ++..+. .+.+..-+.+|...+++.+|..++++. ...+.+ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566788889999999998887654 233332 566777788899999999998888776 122222 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003150 723 WGTLLGACRVHGNVELAEVASSHLFD 748 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 748 (844)
+...+..+...+++..|-..|..+++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333334455666666655555543
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.37 E-value=44 Score=32.98 Aligned_cols=164 Identities=5% Similarity=-0.066 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 003150 588 AESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLAL----FHEMLNNKIKPDHVTFLAIISACG 663 (844)
Q Consensus 588 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~a~~ 663 (844)
.+.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456777788999999999886542 3456677887766654 455556788888887777776554
Q ss_pred hhCC--------HHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003150 664 HAGQ--------VEAGIHYFHCMTEEYGIPA--RMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVH 733 (844)
Q Consensus 664 ~~g~--------~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 733 (844)
.-.. +++|+++ -.+ .+-.| +++....+...|.+.|++.+|..-+-- +..-|+..+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~W---S~~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNW---SIK-FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHH---HHH-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHH---Hhh-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHh
Confidence 4221 1222222 222 23223 678888899999999999999986652 2122455666666655554
Q ss_pred ---CCHHHHHHHHHHhhcCCCCCCchHHHHH-HHHHhcCCcchHHHHHHHHHH
Q 003150 734 ---GNVELAEVASSHLFDLDPQNSGYYVLLS-NIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 734 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~y~~~g~~~~a~~~~~~m~~ 782 (844)
|...++ +.+..-+ -.|...|+...|..+++...+
T Consensus 179 ~~~~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 179 VDDIEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TTCCCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCCCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 443332 2222222 235677899999998887654
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.60 E-value=7.9 Score=30.46 Aligned_cols=63 Identities=10% Similarity=0.224 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 632 HLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 632 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
+.-+..+-++.+....+.|+.....+.|.||.+.+++.-|.++|+.++.+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344566667777777789999999999999999999999999999988753 333456766654
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.58 E-value=15 Score=28.77 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=35.5
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003150 595 LYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTF 655 (844)
Q Consensus 595 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 655 (844)
.+...|++++|..+.+...-||.+.|-+|-. .+.|-.+++...+.++..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445677777777777666677777765543 45666666666666666654 4444444
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.98 E-value=3 Score=43.37 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHH-----cCCccCC
Q 003150 723 WGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKE-----RGVQKIP 789 (844)
Q Consensus 723 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~~ 789 (844)
...++.++...|+.+.+...++.++..+|-+...|..|..+|...|+..+|.+.++..++ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 445666777889999999999999999999999999999999999999999887776543 4665444
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.78 E-value=4.5 Score=33.90 Aligned_cols=66 Identities=6% Similarity=-0.045 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 717 APDAGVWGTLLGACRVHG---NVELAEVASSHLFDLDPQ-NSGYYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
.|++.+--.+..++.+.. +...|+.+++.+++.+|. .-..+..|+-.+.+.|++++|.+.-+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567777777777777665 456789999999988884 466788899999999999999999987764
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.77 E-value=9.5 Score=39.52 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHhHh----hcCCCCCchHH
Q 003150 620 WNSMIAAYGCHGHLKDSLALFHEMLNNKIKP-DHVTFLAIISACGHAGQVEAGIHYFHCMTE----EYGIPARMEHY 691 (844)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 691 (844)
...++..+...|++++|+..+.++.. ..| +...+..++.++.+.|+..+|++.|+...+ +.|+.|++.+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456777788888888888888877 344 556888888899999999999888887644 46888886643
No 265
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=78.13 E-value=40 Score=37.33 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 003150 522 MITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLYAK--- 598 (844)
Q Consensus 522 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--- 598 (844)
....+.-.|+++.|++.+-.. ...+.+.+...+.-+.-.+- ...++.. ..+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHhh
Confidence 456667789999999987755 35667777776665443332 1111111 001 11 2235568888875
Q ss_pred cCCHHHHHHHHHhcCCCC
Q 003150 599 CGNLDFARTVFDMMQRKQ 616 (844)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~ 616 (844)
..++.+|.+.|--+..++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 578888888887664443
No 266
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=78.11 E-value=17 Score=35.66 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=35.0
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 003150 711 INSMPFAPDA--GVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752 (844)
Q Consensus 711 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 752 (844)
|...++.|.. .++++.++.+.+++|+..|...+++++++.|+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3344667764 67888888999999999999999999999995
No 267
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.87 E-value=38 Score=37.46 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 003150 214 VLWNVMLNGYVTCGESDNATRAFKEMRISETKPNSVTFACILSVCAV 260 (844)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 260 (844)
..| ++|--+.+.|++++|.++.++.... .+--...|...+..++.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 355 5677788888888888888766431 11111355555666553
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.53 E-value=15 Score=30.68 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 705 NKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 705 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
.+++.-+-.+.+.|++.+..+.|.+|++-+|+..|.+++|-+...-.+...+|-.+. .++.-.+.+.|
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l------------qElkPtl~ELG 140 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELG 140 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHT
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH------------HHHhhHHHHhC
Confidence 444444555678999999999999999999999999999988765444455554442 34555566667
Q ss_pred Cc
Q 003150 785 VQ 786 (844)
Q Consensus 785 ~~ 786 (844)
+.
T Consensus 141 I~ 142 (152)
T 2y69_E 141 IS 142 (152)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.19 E-value=53 Score=31.47 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHHHHhcCCCChh--hhhHHHHHHhcCCChhHHHHHhc
Q 003150 262 AMTDFGTQVHGVVVSVGLEFDPQ--VANSLLSMYSKSGRLYDALKLFE 307 (844)
Q Consensus 262 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 307 (844)
+.......+...+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333344555555555443321 11233344444555555555554
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.10 E-value=49 Score=39.89 Aligned_cols=166 Identities=7% Similarity=0.043 Sum_probs=98.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhch
Q 003150 488 GSAITDMYAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHAL 567 (844)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 567 (844)
...++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|.+.|++... |+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------hh
Confidence 34566667777888888776655543 444444566778889999999999987532 2222111000 00
Q ss_pred HHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----HHHHHHHHHHHhcCChHHHH
Q 003150 568 HYGKEIHSLMIKD-S-CRSDNIAESVLIDLYAKCGNLDFARTVFDM----MQRKQE----AAWNSMIAAYGCHGHLKDSL 637 (844)
Q Consensus 568 ~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~ 637 (844)
.. ...+... . ...-..-|.-++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 0011111 1 111223455667777777777776655432 222221 25888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHH
Q 003150 638 ALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG 671 (844)
Q Consensus 638 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 671 (844)
..+-.+-.... -...+..|+..++..|..++-
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 98888876433 345677777777777776553
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.14 E-value=36 Score=31.73 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=37.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHhhcc
Q 003150 120 RVFAKMGLFRFALLFYFKMLSCGIRPDNHT--FPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVFV--GSSLVKLYTEN 195 (844)
Q Consensus 120 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~ 195 (844)
...++.|+.+-+..+++.+.+.|..++... -.+.|...+..|+.+ +.+.+++.|..++... ..+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 344555666666666666555555544321 112333333444443 3344444554433221 11223333344
Q ss_pred CChHHHHHHHhc
Q 003150 196 RCIDEARYVFDK 207 (844)
Q Consensus 196 g~~~~A~~~f~~ 207 (844)
|+.+-+..+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 555444444443
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=71.31 E-value=1e+02 Score=32.03 Aligned_cols=54 Identities=9% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHhhhCCCHHHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh
Q 003150 392 DIYFKCRDVKMACKVFKENTAA---DVVMFTAMISGYVLNGISHEALEKFRWLIQEKIIPNT 450 (844)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (844)
...+..|+.+-+..+++....+ |..-++.|..+ ++.|+. ++.+.+.+.|..|+.
T Consensus 316 ~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChH----HHHHHHHHCcCCCCC
Confidence 3344556666555555543322 22222333222 334443 344444556666554
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.20 E-value=19 Score=30.04 Aligned_cols=62 Identities=10% Similarity=0.232 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 003150 633 LKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVD 696 (844)
Q Consensus 633 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 696 (844)
.-+..+-++.+....+.|+......-|.+|.+.+++.-|.++|+.++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3455566667777778999999999999999999999999999999875 4444556776654
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.08 E-value=72 Score=30.90 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=21.1
Q ss_pred HHHHHhcCCChhHHHHHhccCCCC-CccchHHHHHHHHhCCChhHHHHH
Q 003150 289 LLSMYSKSGRLYDALKLFELMPQI-NLVTWNGMIAGHVQNGFMNEALDL 336 (844)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 336 (844)
.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 344444555555555555544332 221223334444455555433333
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.93 E-value=3.8 Score=39.21 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 003150 696 DLFGRAGRLNKALETINSM-PFAP-DAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNS 754 (844)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 754 (844)
.-+.+.|.+++|++.+... .-.| |+..-..|...++..|+.+.|..-++-+.+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3456788999988776655 3344 566677778888899999999999999999998753
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.09 E-value=45 Score=31.03 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=12.1
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCC
Q 003150 223 YVTCGESDNATRAFKEMRISETKPN 247 (844)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~g~~p~ 247 (844)
.++.|+.+-+..+++.+.+.|..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3445555555555554444444333
No 277
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.47 E-value=75 Score=38.30 Aligned_cols=61 Identities=8% Similarity=-0.137 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCc-----hHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFDLDPQNSG-----YYVLLSNIHADAGQWGNVNKIRRLMKE 782 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 782 (844)
-|..++..+.++|-++.+.+.++.+++..+.+.. .|..+-+.+.+.|++++|-...-.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 3444555555566666666666666554332221 233344445555666666555544443
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=62.86 E-value=26 Score=33.40 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=46.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCChhh-------HHHHHHHhh--ccCCchHHHHHHHHHHHhcC---------CC
Q 003150 220 LNGYVTCGESDNATRAFKEMRISETKPNSVT-------FACILSVCA--VEAMTDFGTQVHGVVVSVGL---------EF 281 (844)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~ 281 (844)
+...++.|+.+....+++.+.+.|..++... .+.+..++. +.|..+.++.+++.-...+. ..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344566777777777777666666555332 223333322 55666666666655433111 00
Q ss_pred ChhhhhHHHHHHhcCCChhHHHHHhccCC
Q 003150 282 DPQVANSLLSMYSKSGRLYDALKLFELMP 310 (844)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (844)
......+.+...+..|+.+-+..+++.-.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 00012233444455666666666665433
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.08 E-value=93 Score=28.22 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=63.2
Q ss_pred HHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCC
Q 003150 505 YKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRS 584 (844)
Q Consensus 505 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 584 (844)
..+.+.+..++...-...+..+.+.+..+ +...+.++.. .++...-...+.++...+..+....+...+ -.+
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l----~~~ 93 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL----KDE 93 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT----TCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH----cCC
Confidence 33444444455544444555555555432 3333333322 234444444444444444322222221111 124
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003150 585 DNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH 664 (844)
Q Consensus 585 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 664 (844)
+..+-...+.++++.|+.+....+.+.+..++...-...+.++...|+. ++...+.++.+ .||...-...+.++..
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4444445555555555543333333333445544444445555555443 23333333332 3444444444444444
Q ss_pred hCC
Q 003150 665 AGQ 667 (844)
Q Consensus 665 ~g~ 667 (844)
.|.
T Consensus 170 ~~~ 172 (211)
T 3ltm_A 170 IGG 172 (211)
T ss_dssp HCS
T ss_pred hCc
Confidence 443
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.98 E-value=90 Score=30.16 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=5.2
Q ss_pred hCCCHHHHHHHHH
Q 003150 396 KCRDVKMACKVFK 408 (844)
Q Consensus 396 ~~g~~~~A~~~~~ 408 (844)
..|+.+-+..+++
T Consensus 138 ~~~~~~~v~~Ll~ 150 (285)
T 3kea_A 138 MLNDVSIVSYFLS 150 (285)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHh
Confidence 3344444433333
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=61.15 E-value=58 Score=29.18 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=26.9
Q ss_pred HHHhcCCChhHHHHHhccC-CC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc
Q 003150 291 SMYSKSGRLYDALKLFELM-PQ---INLVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDE 349 (844)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 349 (844)
...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..|+.
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 3344555665555555543 11 23333444444333222233334555555566655543
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=60.74 E-value=1.6e+02 Score=30.47 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=9.2
Q ss_pred HhhhCCCHHHHHHHHHh
Q 003150 393 IYFKCRDVKMACKVFKE 409 (844)
Q Consensus 393 ~~~~~g~~~~A~~~~~~ 409 (844)
..+..|+.+-+..+++.
T Consensus 218 ~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 218 IAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 34455666555555554
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.80 E-value=1.3e+02 Score=30.20 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=47.5
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCChhhHHHHH
Q 003150 387 KSALIDIYFKCRDVKMACKVFKENTAAD---VVMFTAMISGYVLNGI--SHEALEKFRWLIQEKIIPNTVTLSSIL 457 (844)
Q Consensus 387 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll 457 (844)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3567778888999999999999987764 2344555555554433 356778888888877655544443333
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.98 E-value=28 Score=36.56 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 655 FLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR--MEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 655 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
...+..-+.+.|++++|.+.|.++... ...+. .+.+-..+.++...|++..|...+++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444455555555555555555442 22221 344444455555555555555554444
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.53 E-value=55 Score=34.20 Aligned_cols=95 Identities=8% Similarity=-0.074 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHH
Q 003150 588 AESVLIDLYAKCGNLDFARTVFDMMQR------KQEAAWNSMIAAYGCHGHLKDSLALFHEMLN---NKIKPDHVTFLAI 658 (844)
Q Consensus 588 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~~l 658 (844)
....+.+.|.++|+++.|.+.|.++.. .-...|-..+..+...+++..+...+++... .+-.|+...-...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456688899999999999999888764 1245677778888888999999888888754 3323333321111
Q ss_pred --HHHHhhhCCHHHHHHHHHHhHhhc
Q 003150 659 --ISACGHAGQVEAGIHYFHCMTEEY 682 (844)
Q Consensus 659 --l~a~~~~g~~~~a~~~~~~~~~~~ 682 (844)
...+...+++.+|-+.|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 123456788888888887776543
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.70 E-value=67 Score=29.15 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 721 GVWGTLLGACRVHGNVELAEVASSHLFD--LDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 721 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
.+|-..+..| ..++...+..+++.+.. +.-.-+..|...|..+...|++++|.++++.-.+++
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444333 23345556666665543 344556666677777777777777777766554443
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.70 E-value=90 Score=28.73 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=22.9
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHhhccCChHHHHHHHhcCC
Q 003150 158 SALGNLRFGKLVHDMIWLMGCEIDVF--VGSSLVKLYTENRCIDEARYVFDKMS 209 (844)
Q Consensus 158 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~ 209 (844)
+..|+++.. ..+++.|..++.. ...+.+...++.|+.+-+..+++.-.
T Consensus 17 ~~~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 17 TQYGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 445555433 3344455443322 12234445556666666666655443
No 288
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=54.68 E-value=27 Score=34.29 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=44.3
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 711 INSMPFAPDA--GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 711 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
|...++.|.. .++++.++.+.+++|+..|...+++++++.|+.. ..++|.++...-...+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 4444667764 6788888889999999999999999999988521 12446666666655543
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.01 E-value=42 Score=31.85 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=44.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHh--ccCCchHHHHHHHHHHHhC---------CCCCc
Q 003150 121 VFAKMGLFRFALLFYFKMLSCGIRPDNH-------TFPSVMKACS--ALGNLRFGKLVHDMIWLMG---------CEIDV 182 (844)
Q Consensus 121 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~ 182 (844)
..++.|+.+....+++.+.+.|..++.. -.+.|..++. +.|+.+.++.+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3356677777767777666666555533 2334444432 5566666666655443211 00000
Q ss_pred chHHHHHHHhhccCChHHHHHHHhcC
Q 003150 183 FVGSSLVKLYTENRCIDEARYVFDKM 208 (844)
Q Consensus 183 ~~~~~li~~y~~~g~~~~A~~~f~~~ 208 (844)
....+.+...+..|+.+-+..+++.-
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 01223334445567776666666643
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.76 E-value=1.3e+02 Score=26.95 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhH
Q 003150 614 RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMT 679 (844)
Q Consensus 614 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 679 (844)
.++...-...+.++...|+. ++...+.++.. .|+...-...+.++...|. +++...+..+.
T Consensus 118 d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34443333444444444432 23333333332 2344444444444444444 23344444443
No 291
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=49.30 E-value=66 Score=32.48 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=6.9
Q ss_pred hhCCCHHHHHHHHHh
Q 003150 395 FKCRDVKMACKVFKE 409 (844)
Q Consensus 395 ~~~g~~~~A~~~~~~ 409 (844)
++.|..+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 334445444444443
No 292
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=48.85 E-value=91 Score=28.80 Aligned_cols=40 Identities=3% Similarity=-0.138 Sum_probs=20.4
Q ss_pred HHHHHcCCCCCccc--cccchhhhhccccchhhHHHHHHHHH
Q 003150 338 RKMILSGVKPDEIT--FSSFLPSICEVASIKQGKEIHGYIIR 377 (844)
Q Consensus 338 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 377 (844)
+.+.+.|..++... =.+.+......|+...+.++.+.+.+
T Consensus 194 ~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555444322 23344555566666666666666554
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.68 E-value=1.2e+02 Score=27.81 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=8.6
Q ss_pred HHHHHHhcCChhhHhhhccC
Q 003150 87 ILGMYVLCGGFIDAGNMFPR 106 (844)
Q Consensus 87 l~~~~~~~g~~~~a~~~f~~ 106 (844)
.+...++.|+.+-...+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHc
Confidence 33344444444444444433
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.38 E-value=1.6e+02 Score=26.25 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=54.5
Q ss_pred hcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCCchH
Q 003150 611 MMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEH 690 (844)
Q Consensus 611 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 690 (844)
.+..++...-...+.++...|+.+ +...+.++.. .||...-...+.++...|.. ++...+..+.. .++...
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~v 154 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWV 154 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHH
Confidence 333455555555555555555532 3333444433 45555555555555555543 23333333322 345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003150 691 YACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRV 732 (844)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 732 (844)
-...+.++++.|. +++...+..+-..++..+-.....+..+
T Consensus 155 r~~A~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 155 RQSAADALGEIGG-ERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5666667776665 3444444444223555554444444443
No 295
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.06 E-value=1.1e+02 Score=27.50 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhcCCc
Q 003150 704 LNKALETINSMPFAPDA-------GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAGQW 770 (844)
Q Consensus 704 ~~~A~~~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 770 (844)
++.|+.+++.+.-.-|. .+--..+..|.+.|.+++|..++++.+..+|++...-..|.++-.....+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 56677777777333332 12233456699999999999999999999888877766666664443333
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.22 E-value=1.3e+02 Score=29.55 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hHhHHHHHHHHHHcCC--chHHHHHHHHHHHCCCCCChHH
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKD---VVCWNSMITRYSQNGK--PEEAIDLFRQMAIEGVKHDCMS 553 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 553 (844)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467788889999999999999998762 2344455555554433 3456778888887776554433
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.13 E-value=2e+02 Score=28.23 Aligned_cols=204 Identities=12% Similarity=0.117 Sum_probs=98.1
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCCCh--hhHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCChhh---HHHHHHH
Q 003150 387 KSALIDIYFKCRDVKMACKVFKENTAADV--VMFTAMISGYVLNGI--SHEALEKFRWLIQEKIIPNTVT---LSSILPA 459 (844)
Q Consensus 387 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a 459 (844)
...++.-|...|+.++|...++++..|.- ..-..+|..-...++ -+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 34677778888999999999998876541 111222222222222 2334455666653 33222222 3344433
Q ss_pred Hhccc-chHHHHHHHH----HHHHhCCCCCccchHHHHHHHHhcC--CHHHHHHHHHh------cCC----C----Ch--
Q 003150 460 CADLA-ALKLGKELHC----YILKNGLDGKCHVGSAITDMYAKCG--RLDLAYKIFKR------MSE----K----DV-- 516 (844)
Q Consensus 460 ~~~~~-~~~~a~~~~~----~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~------m~~----~----~~-- 516 (844)
+.... |...+...+. .++..++-|-..+....-..-...| -+..|..++.. +.. + ..
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 33322 3333444433 3344444433333221110000000 02223333311 110 0 11
Q ss_pred --HhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchh--chHHHHHHHHHHHHhCCCCchhHHHHH
Q 003150 517 --VCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLH--ALHYGKEIHSLMIKDSCRSDNIAESVL 592 (844)
Q Consensus 517 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l 592 (844)
...+.++.=|...|+.++|.+.++++..-...+ .+....+..+.-+.+ ..+....++..+.+.|+-+.......+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 234567888888999999999999885322111 233344444554432 345566777777776665555444433
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.91 E-value=1.9e+02 Score=25.92 Aligned_cols=142 Identities=12% Similarity=0.089 Sum_probs=69.5
Q ss_pred HHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhchHHHHHHH
Q 003150 495 YAKCGRLDLAYKIFKRMSEKDVVCWNSMITRYSQNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHALHYGKEIH 574 (844)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 574 (844)
+.+.+..+....+.+.+..+|...-...+.++.+.+..+ +...+.++.. .++...-...+.+..+.+..+....+.
T Consensus 43 L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~ 118 (211)
T 3ltm_A 43 LGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI 118 (211)
T ss_dssp HHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred HHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 333333333333334444444444444445555555432 3333333322 244444445555555555433222222
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003150 575 SLMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN 645 (844)
Q Consensus 575 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 645 (844)
. +. -.++..+-...+.++++.|..+....+...+..++...-...+.++...+. .++...+.++.+
T Consensus 119 ~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 119 K-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp H-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred H-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 2 21 245555666666777777765444444444445666666666777777665 456666666655
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.46 E-value=1.2e+02 Score=25.12 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQRKQ---EAAWNSMIAAYGCHGH--LKDSLALFHEMLNNKIKPDH 652 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 652 (844)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3467788888899999999999887652 3445555556655442 35567777777776654433
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.42 E-value=1.4e+02 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHh
Q 003150 686 ARMEHYACMVDLFGRAGRLNKALETINS 713 (844)
Q Consensus 686 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (844)
+++......+..+.|.|+-++|.++|-+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3444455566777777777777776644
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.83 E-value=2.9e+02 Score=27.69 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 003150 590 SVLIDLYAKCGNLDFARTVFDMMQRKQ---EAAWNSMIAAYGCHGH--LKDSLALFHEMLNNKIKPDHVT 654 (844)
Q Consensus 590 ~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t 654 (844)
+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+...|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 567888888899999999999988764 3445555666655443 3457778888887776554443
No 302
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.68 E-value=2e+02 Score=26.17 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=9.0
Q ss_pred HhCCChhHHHHHHHHHHHcC
Q 003150 325 VQNGFMNEALDLFRKMILSG 344 (844)
Q Consensus 325 ~~~g~~~~A~~~~~~m~~~g 344 (844)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444444
No 303
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.99 E-value=2.2e+02 Score=26.00 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=8.1
Q ss_pred HhhccCChHHHHHHHhc
Q 003150 191 LYTENRCIDEARYVFDK 207 (844)
Q Consensus 191 ~y~~~g~~~~A~~~f~~ 207 (844)
..+..|+.+-+..+++.
T Consensus 83 ~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33444555555544443
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.71 E-value=1.4e+02 Score=25.62 Aligned_cols=47 Identities=9% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHHHHHhhc--CCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 003150 739 AEVASSHLFD--LDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERGV 785 (844)
Q Consensus 739 a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 785 (844)
+..+++.+.. +.-..+..|...|..+...|++++|.++++.-.+++-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5555555554 3345566677777777777777777777775555443
No 305
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.61 E-value=1.7e+02 Score=26.63 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=11.9
Q ss_pred HHHhhccCChHHHHHHHhc
Q 003150 189 VKLYTENRCIDEARYVFDK 207 (844)
Q Consensus 189 i~~y~~~g~~~~A~~~f~~ 207 (844)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777777766654
No 306
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=39.55 E-value=1.1e+02 Score=29.39 Aligned_cols=18 Identities=0% Similarity=-0.250 Sum_probs=0.0
Q ss_pred HHHHHHhhccCChHHHHH
Q 003150 186 SSLVKLYTENRCIDEARY 203 (844)
Q Consensus 186 ~~li~~y~~~g~~~~A~~ 203 (844)
.+.+...+..|+.++..+
T Consensus 16 ~~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDG 33 (285)
T ss_dssp ------------------
T ss_pred HHHHHHHhhcCCCCCccc
Confidence 344455555555555444
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.38 E-value=1.9e+02 Score=24.81 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hHhHHHHHHHHHHcCC--chHHHHHHHHHHHCCCCCChHH
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKD---VVCWNSMITRYSQNGK--PEEAIDLFRQMAIEGVKHDCMS 553 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 553 (844)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 567788999999999999999997662 3444555555555432 4567788888887776554433
No 308
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=38.21 E-value=1.4e+02 Score=28.23 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=10.8
Q ss_pred HHHHhcCCChhHHHHHhccC
Q 003150 290 LSMYSKSGRLYDALKLFELM 309 (844)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~ 309 (844)
+...+..|+.+-+..+++.-
T Consensus 105 L~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 105 LHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHCC
Confidence 33444556666666665543
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.65 E-value=2.2e+02 Score=25.07 Aligned_cols=17 Identities=0% Similarity=-0.185 Sum_probs=9.6
Q ss_pred HHhcCChhhHhhhccCC
Q 003150 91 YVLCGGFIDAGNMFPRL 107 (844)
Q Consensus 91 ~~~~g~~~~a~~~f~~~ 107 (844)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666544
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.17 E-value=1.6e+02 Score=25.66 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=24.8
Q ss_pred HHHHHHhhc--CCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 003150 740 EVASSHLFD--LDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKERG 784 (844)
Q Consensus 740 ~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 784 (844)
..+++.+.. +.-.-+..|...|..+...|++.+|.++++.-.+++
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444433 334445566666666666666666666666544443
No 311
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.53 E-value=1.5e+02 Score=29.61 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHHHh
Q 003150 495 YAKCGRLDLAYKIFKR 510 (844)
Q Consensus 495 ~~~~g~~~~A~~~~~~ 510 (844)
-++.|..+-+.-+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3445565555555554
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.69 E-value=2e+02 Score=23.75 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hHhHHHHHHHHHHcCC--chHHHHHHHHHHHCCCCCChHH
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKD---VVCWNSMITRYSQNGK--PEEAIDLFRQMAIEGVKHDCMS 553 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 553 (844)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 567788999999999999999997662 3444555555555432 3567788888887776554433
No 313
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.27 E-value=3.5e+02 Score=26.40 Aligned_cols=105 Identities=10% Similarity=0.150 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCCCccch--HHHHHHHHhcCCHHHHHHHHHhcC----CCChHhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003150 470 KELHCYILKNGLDGKCHVG--SAITDMYAKCGRLDLAYKIFKRMS----EKDVVCWNSMITRYSQNGKPEEAIDLFRQMA 543 (844)
Q Consensus 470 ~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 543 (844)
..+...+++.|..++..-. .+-+...+..|..+....+++.-. .+|..-++.|..+ ++.|+. ++.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHH
Confidence 3445556677766654322 233445567777777776665321 1222223334333 344553 3445556
Q ss_pred HCCCCCChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCch
Q 003150 544 IEGVKHDCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDN 586 (844)
Q Consensus 544 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 586 (844)
+.|..||..+ . +...+..|+. ++.+.+++.|-.||.
T Consensus 294 ~~GAd~n~~~--~-L~~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 294 KRGASTDCGD--L-VMTARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp TTSCSSTTCC--H-HHHHHHTTCH----HHHHHHHHTTCCC--
T ss_pred HCCCCCCCCC--H-HHHHHHcCCH----HHHHHHHHCcCCCCC
Confidence 6777777554 2 2222333443 344556666665553
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.98 E-value=3.5e+02 Score=28.73 Aligned_cols=61 Identities=5% Similarity=0.089 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-H------HHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 003150 586 NIAESVLIDLYAKCGNLDFARTVFDMMQRKQE-A------AWN-SMIAAYGCHGHLKDSLALFHEMLNN 646 (844)
Q Consensus 586 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~------~~~-~li~~~~~~g~~~~A~~l~~~m~~~ 646 (844)
..++|.++..|...+.++.|..+.....-|.. . .|. -+...+.-.+++.+|.+.|.+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667788888888888888888887765421 1 221 1234456677888888777777653
No 315
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=32.88 E-value=3.6e+02 Score=26.32 Aligned_cols=118 Identities=6% Similarity=0.036 Sum_probs=58.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHhhc
Q 003150 119 IRVFAKMGLFRFALLFYFKMLSCGIRPDNHT--FPSVMKACSALGNLRFGKLVHDMIWLMGCEIDVF--VGSSLVKLYTE 194 (844)
Q Consensus 119 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~ 194 (844)
+-..++.|+.+....++.. .+..++... -.+.|...+..|+.+ +.+.+++.|..++.. ...+.+...+.
T Consensus 28 L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 3344567777766666543 343333221 123444455566654 444555667655432 12233445556
Q ss_pred cCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh
Q 003150 195 NRCIDEARYVFDKMSQR---DCVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNS 248 (844)
Q Consensus 195 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 248 (844)
.|+.+-+..+++.-... |...++.|.. .+..|+.+ +++.+.+.|..|+.
T Consensus 101 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 101 YGHYEVTELLLKHGACVNAMDLWQFTPLHE-AASKNRVE----VCSLLLSHGADPTL 152 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHH----HHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCcc
Confidence 77777777777653332 2223333333 34555543 34444455655543
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.36 E-value=2e+02 Score=26.84 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=42.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC--CCCC----ChHHHHHHHHHHhchhchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003150 523 ITRYSQNGKPEEAIDLFRQMAIE--GVKH----DCMSLSAALSACANLHALHYGKEIHSLMIKDSCRSDNIAESVLIDLY 596 (844)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 596 (844)
+..+....++++|.+++++.... ++++ +.......+..-.....-..+..+.+.+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45566677777777776665431 2221 1112222222222222223333333333 22 33444455566777
Q ss_pred HhcCCHHHHHHHHHh
Q 003150 597 AKCGNLDFARTVFDM 611 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~ 611 (844)
.+.|+-++|.++|=+
T Consensus 102 ~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHH
Confidence 777777777777644
No 317
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.36 E-value=1.3e+02 Score=28.24 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHhhcc---CCchHHHHHHHHHHHhcCCC--------
Q 003150 220 LNGYVTCGESDNATRAFKEMRISETKPNS-------VTFACILSVCAVE---AMTDFGTQVHGVVVSVGLEF-------- 281 (844)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~-------- 281 (844)
+...++.|+.+....+++.+.+.|..++. .-.+. |...+.. |+.+.++.+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 33445667777666666666666655443 22222 3333333 66666665555443322110
Q ss_pred C-hhhhhHHHHHHhcCCChhHHHHHhccCC
Q 003150 282 D-PQVANSLLSMYSKSGRLYDALKLFELMP 310 (844)
Q Consensus 282 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (844)
+ .....+.+...+..|+.+-+..+++.-.
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 0 0112333444455666666666665533
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.31 E-value=1.2e+02 Score=26.09 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 003150 589 ESVLIDLYAKCGNLDFARTVFDMMQRKQ---EAAWNSMIAAYGCHGH--LKDSLALFHEMLNNKIKPDH 652 (844)
Q Consensus 589 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 652 (844)
.+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567788888899999999999887652 3445555556655432 34566777777766654433
No 319
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.85 E-value=3.7e+02 Score=26.23 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=30.2
Q ss_pred hHHHHHHHhcCChhhHhhhccCCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 003150 85 AKILGMYVLCGGFIDAGNMFPRLDLATSL----PWNRMIRVFAKMGLFRFALLFYFKMLSCGIRPDN 147 (844)
Q Consensus 85 ~~l~~~~~~~g~~~~a~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 147 (844)
+.++..-++.|+++-.+.+++.=..+|.. -++.|.-+ ++.|+.+ +.+.+.+.|..|+.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A-~~~g~~~----iv~~Ll~~ga~~~~ 87 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSRED----IVELLLRHGADPVL 87 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTC
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH-HHcCCHH----HHHHHHHcCCchhh
Confidence 44555556778887777777654333322 23444333 4455543 33444556655543
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.28 E-value=3e+02 Score=27.38 Aligned_cols=91 Identities=11% Similarity=0.137 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hHhHHHHHHHHHHcC-CchHHHHHHHHHHHCCCCCChHH---HHHHHHHH
Q 003150 489 SAITDMYAKCGRLDLAYKIFKRMSEKD---VVCWNSMITRYSQNG-KPEEAIDLFRQMAIEGVKHDCMS---LSAALSAC 561 (844)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 561 (844)
..++.-|...|+.++|...++++..|. .+....+..++-+.. ..+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 467788889999999999999998763 222333333332221 23456677777877765444332 33333333
Q ss_pred hchh-chHHHHHHHHHHHH
Q 003150 562 ANLH-ALHYGKEIHSLMIK 579 (844)
Q Consensus 562 ~~~~-~~~~a~~~~~~~~~ 579 (844)
.... +...+..++..+..
T Consensus 95 ~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHG
T ss_pred hHhhcCccchHHHHHHHHH
Confidence 3322 44556666666553
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.19 E-value=2.2e+02 Score=25.90 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=11.4
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCc
Q 003150 324 HVQNGFMNEALDLFRKMILSGVKPDE 349 (844)
Q Consensus 324 ~~~~g~~~~A~~~~~~m~~~g~~p~~ 349 (844)
.+..|+. ++.+.+.+.|..|+.
T Consensus 179 A~~~~~~----~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 179 ACDEERV----EEAKFLVTQGASIYI 200 (231)
T ss_dssp HHHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHHCCCH----HHHHHHHHCCCCCCC
Confidence 3445553 344455566766553
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.58 E-value=4e+02 Score=31.14 Aligned_cols=34 Identities=9% Similarity=-0.227 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCCCCc
Q 003150 722 VWGTLLGACRVHGNVELAEVASSHLFD-LDPQNSG 755 (844)
Q Consensus 722 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~ 755 (844)
-|..++..+..++-++-+...++.+++ ..++++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 566667777778888888888888886 3455443
No 323
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.22 E-value=1.3e+02 Score=25.34 Aligned_cols=14 Identities=14% Similarity=-0.090 Sum_probs=6.0
Q ss_pred cCCChhHHHHHhcc
Q 003150 295 KSGRLYDALKLFEL 308 (844)
Q Consensus 295 ~~g~~~~A~~~~~~ 308 (844)
+.|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34444444444433
No 324
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.23 E-value=3e+02 Score=24.27 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=28.7
Q ss_pred hccCChHHHHHHHhcCCCC-C-cchHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCh
Q 003150 193 TENRCIDEARYVFDKMSQR-D-CVLWNVMLNGYVTCGESDNATRAFKEMRISETKPNS 248 (844)
Q Consensus 193 ~~~g~~~~A~~~f~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 248 (844)
++.|+++....++..-... + ..-+ +.+...+..|+.+.-.++.+.+.+.|..+|.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 3556666665555543211 1 1112 2334445566666556666667777766654
No 325
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.71 E-value=2.4e+02 Score=24.89 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=43.6
Q ss_pred hcCCChhHHHHHhccCCC-CC-ccchHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCccc---cccchhhhhccc--cch
Q 003150 294 SKSGRLYDALKLFELMPQ-IN-LVTWNGMIAGHVQNGFMNEALDLFRKMILSGVKPDEIT---FSSFLPSICEVA--SIK 366 (844)
Q Consensus 294 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~--~~~ 366 (844)
++.|+++....+++.-.. .+ ..-+ +.+...+..|+.+.-.++.+-+.+.|..++... .+.|..+ +..+ +..
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a-~~~~~~~~~ 91 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL-FQGGGNDIT 91 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH-HHHCTTCHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH-HHcCCcchh
Confidence 455666666655554321 11 1122 334445566666666677777778887766543 2222222 2222 222
Q ss_pred hhHHHHHHHHHhCCCCc
Q 003150 367 QGKEIHGYIIRNGVPLD 383 (844)
Q Consensus 367 ~a~~~~~~~~~~g~~~~ 383 (844)
...++.+.+++.|..++
T Consensus 92 ~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 92 GTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHTTCCSS
T ss_pred hHHHHHHHHHHCCCCCC
Confidence 23455555666665443
No 326
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.37 E-value=2e+02 Score=23.98 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=6.8
Q ss_pred HhCCChhHHHHHHHH
Q 003150 224 VTCGESDNATRAFKE 238 (844)
Q Consensus 224 ~~~g~~~~A~~~~~~ 238 (844)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 444555444444443
No 327
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.10 E-value=3.5e+02 Score=23.71 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=50.5
Q ss_pred HhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------------CHH-HHHHHH
Q 003150 597 AKCGNLDFARTVFDMMQRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKP----------------DHV-TFLAII 659 (844)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------------d~~-t~~~ll 659 (844)
--.|.+..+.-.+...-.-...-|.. -+|-+..++..|+..++.+++..+.. |.. -++.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 34577777766665543222222322 35677888999999888888654442 222 344455
Q ss_pred HHHhhhCCHHHHHHHHHHh
Q 003150 660 SACGHAGQVEAGIHYFHCM 678 (844)
Q Consensus 660 ~a~~~~g~~~~a~~~~~~~ 678 (844)
..|...|..+||+.+|..-
T Consensus 122 ~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhh
Confidence 5788888999998887654
No 328
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.71 E-value=2.4e+02 Score=26.98 Aligned_cols=21 Identities=10% Similarity=-0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 003150 116 NRMIRVFAKMGLFRFALLFYF 136 (844)
Q Consensus 116 ~~li~~~~~~g~~~~a~~l~~ 136 (844)
.+.+...+..|+.++..++..
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~ 36 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKP 36 (285)
T ss_dssp ---------------------
T ss_pred HHHHHHHhhcCCCCCcccCCC
Confidence 444555556666655555433
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.70 E-value=3.9e+02 Score=24.10 Aligned_cols=61 Identities=7% Similarity=0.050 Sum_probs=41.7
Q ss_pred HHHHHH---HcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhch-----HHHHHHHHHHHHhCCC
Q 003150 522 MITRYS---QNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHAL-----HYGKEIHSLMIKDSCR 583 (844)
Q Consensus 522 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~~~~~~~~~g~~ 583 (844)
+|+++. +..+++.|+-.+-+|.+.| .|..+.-..++.+.-..|.- ..+...++...+.|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 455553 5688999999999999999 88777777777777666642 3344444444455544
No 330
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.69 E-value=2.4e+02 Score=26.65 Aligned_cols=85 Identities=9% Similarity=-0.075 Sum_probs=37.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-------CcccHHHHHHHHh--ccCCchHHHHHHHHHHHhC---------CC-CCcc
Q 003150 123 AKMGLFRFALLFYFKMLSCGIRP-------DNHTFPSVMKACS--ALGNLRFGKLVHDMIWLMG---------CE-IDVF 183 (844)
Q Consensus 123 ~~~g~~~~a~~l~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~-~~~~ 183 (844)
++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+.++.+++.-...+ +. .|..
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~ 100 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK 100 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTT
T ss_pred HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCC
Confidence 44556555555555555444322 2233444444443 2355555555544432211 00 1112
Q ss_pred hHHHHHHHhhccCChHHHHHHHhcC
Q 003150 184 VGSSLVKLYTENRCIDEARYVFDKM 208 (844)
Q Consensus 184 ~~~~li~~y~~~g~~~~A~~~f~~~ 208 (844)
-.+ -+...+..|+.+-+..+++.-
T Consensus 101 g~t-pL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 101 GQT-ALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp TCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred CCC-HHHHHHHcCCHHHHHHHHHCC
Confidence 222 233334566666666666653
No 331
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.30 E-value=2.5e+02 Score=30.03 Aligned_cols=67 Identities=7% Similarity=-0.130 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH-----HHHhhcCCCCCCchHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 003150 717 APDAGVWGTLLGACRVHGNVELAEVA-----SSHLFDLDPQNSGYYVLLSNIHADAGQWGNVNKIRRLMKER 783 (844)
Q Consensus 717 ~p~~~~~~~ll~~~~~~g~~~~a~~~-----~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 783 (844)
.+|......|-.-+..+|-.+.-..+ ..-+.+..|++.....+|-..|.+.|++-+|.++.-.+-..
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 45666666666666666654432211 11111245667777888888999999999999999888765
No 332
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.72 E-value=1.1e+02 Score=28.73 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=34.0
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhcCCCCh------hhhhHHHHHHhcC---CChhHHHHHhcc
Q 003150 254 ILSVCAVEAMTDFGTQVHGVVVSVGLEFDP------QVANSLLSMYSKS---GRLYDALKLFEL 308 (844)
Q Consensus 254 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~---g~~~~A~~~~~~ 308 (844)
.|...+..|+.+..+.+++.+.+.|..++. ....+.+...+.. |+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc
Confidence 455566778888888888888888876553 1222333334444 666666666543
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.77 E-value=3.9e+02 Score=24.02 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHH---HcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhc
Q 003150 522 MITRYS---QNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHA 566 (844)
Q Consensus 522 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 566 (844)
+|+++. +..+++.|+-.+-+|.+.|..|..+.-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 455554 568899999999999999988888777777777766654
No 334
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.71 E-value=5.1e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=6.6
Q ss_pred CChHhHHHHHHHHHHcCC
Q 003150 514 KDVVCWNSMITRYSQNGK 531 (844)
Q Consensus 514 ~~~~~~~~li~~~~~~g~ 531 (844)
++...-...+.++.+.++
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 343333334444444443
No 335
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.65 E-value=2.2e+02 Score=30.24 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003150 653 VTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPAR---MEHYACMVDLFGRAGRLNKALETINSM 714 (844)
Q Consensus 653 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (844)
..++.++..|.+.+.+++|..+.....--....++ ...+-.++..+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46788888899999999999988876310000111 122234577778889999998887765
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.48 E-value=4.8e+02 Score=23.67 Aligned_cols=64 Identities=11% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHHHHH---HcCCchHHHHHHHHHHHCCCCCChHHHHHHHHHHhchhch-----HHHHHHHHHHHHhCCC
Q 003150 520 NSMITRYS---QNGKPEEAIDLFRQMAIEGVKHDCMSLSAALSACANLHAL-----HYGKEIHSLMIKDSCR 583 (844)
Q Consensus 520 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~~~~~~~~~g~~ 583 (844)
--+|+++. +..+++.|+-.+-+|.+.|..|..+.-..++.+.-..|.- ..+...++...+.|.+
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33556654 5689999999999999999888888877777777666642 3344444444444543
Done!