Query 003151
Match_columns 844
No_of_seqs 516 out of 2940
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 18:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 7.5E-68 1.6E-72 594.5 30.5 606 127-839 39-668 (668)
2 PF01480 PWI: PWI domain; Int 99.7 1.2E-18 2.6E-23 152.7 5.9 68 766-833 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.7E-17 3.8E-22 144.2 8.1 71 762-832 3-73 (74)
4 KOG4661 Hsp27-ERE-TATA-binding 99.6 1.5E-15 3.2E-20 168.4 14.4 82 125-206 402-483 (940)
5 KOG2146 Splicing coactivator S 99.6 5.6E-17 1.2E-21 167.7 3.0 89 748-840 29-120 (354)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4.4E-14 9.5E-19 157.3 17.0 82 126-207 267-348 (352)
7 PLN03134 glycine-rich RNA-bind 99.5 3.9E-14 8.5E-19 138.9 11.3 81 127-207 33-113 (144)
8 TIGR01659 sex-lethal sex-letha 99.5 1.2E-12 2.5E-17 145.8 17.5 83 125-207 104-186 (346)
9 KOG0146 RNA-binding protein ET 99.5 1.2E-13 2.5E-18 142.3 7.9 88 118-205 275-362 (371)
10 KOG0121 Nuclear cap-binding pr 99.5 1.1E-13 2.3E-18 129.0 6.9 83 126-208 34-116 (153)
11 KOG0113 U1 small nuclear ribon 99.4 7.5E-13 1.6E-17 138.8 9.9 83 125-207 98-180 (335)
12 PF00076 RRM_1: RNA recognitio 99.4 1.3E-12 2.9E-17 110.3 9.4 70 131-201 1-70 (70)
13 KOG0125 Ataxin 2-binding prote 99.4 2.8E-12 6.1E-17 136.0 13.7 82 125-208 93-174 (376)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1E-12 2.3E-17 146.3 11.0 81 127-207 2-82 (352)
15 KOG0122 Translation initiation 99.4 4.4E-12 9.6E-17 130.0 13.0 81 127-207 188-268 (270)
16 KOG0127 Nucleolar protein fibr 99.3 6.6E-12 1.4E-16 140.2 10.4 86 126-212 115-200 (678)
17 KOG0145 RNA-binding protein EL 99.3 2.7E-11 5.9E-16 124.7 12.2 81 127-207 277-357 (360)
18 KOG0149 Predicted RNA-binding 99.3 5.8E-12 1.3E-16 128.8 6.9 80 125-205 9-88 (247)
19 KOG0126 Predicted RNA-binding 99.3 8.9E-13 1.9E-17 129.6 1.0 80 126-205 33-112 (219)
20 TIGR01645 half-pint poly-U bin 99.3 1.4E-11 2.9E-16 144.7 10.9 81 127-207 203-283 (612)
21 PLN03213 repressor of silencin 99.3 2.3E-11 5E-16 134.0 11.2 88 126-219 8-97 (759)
22 PF14259 RRM_6: RNA recognitio 99.3 3E-11 6.4E-16 103.0 9.6 70 131-201 1-70 (70)
23 TIGR01645 half-pint poly-U bin 99.3 1.4E-11 3E-16 144.6 9.9 79 126-204 105-183 (612)
24 PLN03120 nucleic acid binding 99.2 2.8E-11 6.1E-16 127.6 10.2 76 128-207 4-79 (260)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.2 6.1E-11 1.3E-15 138.8 14.2 82 126-207 293-374 (509)
26 TIGR01659 sex-lethal sex-letha 99.2 4.6E-11 1E-15 133.1 10.4 82 127-208 192-275 (346)
27 KOG0108 mRNA cleavage and poly 99.2 2.6E-11 5.6E-16 137.3 8.0 82 129-210 19-100 (435)
28 KOG0415 Predicted peptidyl pro 99.2 7.1E-11 1.5E-15 126.1 10.7 86 125-210 236-321 (479)
29 KOG4207 Predicted splicing fac 99.2 2.7E-11 5.9E-16 121.4 6.9 80 128-207 13-92 (256)
30 KOG0107 Alternative splicing f 99.2 4E-11 8.6E-16 117.7 7.6 76 127-207 9-84 (195)
31 KOG0148 Apoptosis-promoting RN 99.2 4.1E-11 8.9E-16 124.4 8.0 82 127-208 61-142 (321)
32 KOG0145 RNA-binding protein EL 99.2 1.1E-10 2.5E-15 120.2 11.1 88 125-212 38-125 (360)
33 TIGR01622 SF-CC1 splicing fact 99.2 7.4E-11 1.6E-15 136.3 11.0 80 128-207 186-265 (457)
34 smart00362 RRM_2 RNA recogniti 99.2 1.4E-10 2.9E-15 96.8 9.5 71 130-202 1-71 (72)
35 KOG0117 Heterogeneous nuclear 99.1 1.5E-10 3.4E-15 127.1 10.8 81 127-207 82-163 (506)
36 TIGR01628 PABP-1234 polyadenyl 99.1 1.9E-10 4.1E-15 136.6 12.1 85 127-212 284-368 (562)
37 KOG0124 Polypyrimidine tract-b 99.1 3.6E-11 7.7E-16 128.5 4.6 78 128-205 113-190 (544)
38 TIGR01628 PABP-1234 polyadenyl 99.1 1.6E-10 3.5E-15 137.2 10.7 77 130-206 2-78 (562)
39 PLN03121 nucleic acid binding 99.1 2.1E-10 4.5E-15 119.4 10.0 76 127-206 4-79 (243)
40 COG0724 RNA-binding proteins ( 99.1 2.2E-10 4.8E-15 119.5 10.0 80 128-207 115-194 (306)
41 smart00360 RRM RNA recognition 99.1 3.2E-10 7E-15 94.0 8.8 70 133-202 1-70 (71)
42 TIGR01648 hnRNP-R-Q heterogene 99.1 2.5E-10 5.4E-15 133.9 10.5 79 127-206 57-136 (578)
43 TIGR01622 SF-CC1 splicing fact 99.1 3.6E-10 7.8E-15 130.6 11.3 81 125-206 86-166 (457)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.7E-09 3.7E-14 126.2 16.7 78 125-207 272-350 (481)
45 KOG0131 Splicing factor 3b, su 99.1 1.1E-10 2.4E-15 115.2 5.5 80 127-206 8-87 (203)
46 KOG0111 Cyclophilin-type pepti 99.1 7.5E-11 1.6E-15 119.0 3.9 83 127-209 9-91 (298)
47 KOG0130 RNA-binding protein RB 99.0 3.3E-10 7.1E-15 106.8 7.0 80 127-206 71-150 (170)
48 KOG0148 Apoptosis-promoting RN 99.0 7.7E-10 1.7E-14 115.1 9.2 77 125-207 161-237 (321)
49 cd00590 RRM RRM (RNA recogniti 99.0 1.9E-09 4.2E-14 90.2 10.0 74 130-204 1-74 (74)
50 KOG0144 RNA-binding protein CU 99.0 1.6E-09 3.5E-14 118.7 11.1 82 124-205 420-501 (510)
51 KOG0144 RNA-binding protein CU 99.0 1.4E-09 2.9E-14 119.3 10.0 90 123-212 29-121 (510)
52 KOG0114 Predicted RNA-binding 99.0 2.5E-09 5.4E-14 96.8 9.9 80 127-209 17-96 (124)
53 KOG0127 Nucleolar protein fibr 98.9 3.6E-09 7.8E-14 118.8 9.3 83 127-209 291-379 (678)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 4.1E-09 8.8E-14 123.0 10.3 75 127-207 1-77 (481)
55 KOG0147 Transcriptional coacti 98.9 1.7E-09 3.8E-14 121.9 6.5 79 128-206 278-356 (549)
56 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1E-08 2.2E-13 120.1 12.1 74 124-204 171-256 (509)
57 TIGR01648 hnRNP-R-Q heterogene 98.9 6.9E-09 1.5E-13 122.0 10.2 74 127-208 232-307 (578)
58 smart00361 RRM_1 RNA recogniti 98.8 1.1E-08 2.4E-13 88.0 8.4 61 142-202 2-69 (70)
59 KOG0226 RNA-binding proteins [ 98.8 2.8E-08 6E-13 102.9 12.6 84 125-208 187-270 (290)
60 KOG0105 Alternative splicing f 98.8 4.8E-09 1E-13 103.8 6.5 79 127-208 5-83 (241)
61 KOG0109 RNA-binding protein LA 98.8 3.8E-09 8.2E-14 110.9 5.8 71 129-207 3-73 (346)
62 PF13893 RRM_5: RNA recognitio 98.8 2E-08 4.3E-13 82.2 8.7 56 145-205 1-56 (56)
63 KOG0124 Polypyrimidine tract-b 98.8 6.4E-09 1.4E-13 111.6 7.1 95 111-205 186-287 (544)
64 KOG0117 Heterogeneous nuclear 98.7 1.5E-08 3.3E-13 111.7 7.7 74 127-208 258-331 (506)
65 KOG4208 Nucleolar RNA-binding 98.7 4.1E-08 8.8E-13 99.3 8.0 84 125-208 46-130 (214)
66 KOG0131 Splicing factor 3b, su 98.7 2.6E-08 5.5E-13 98.8 5.6 81 127-207 95-176 (203)
67 KOG0109 RNA-binding protein LA 98.6 2.5E-08 5.5E-13 104.9 5.3 79 122-208 72-150 (346)
68 KOG4206 Spliceosomal protein s 98.6 1E-07 2.2E-12 97.9 7.5 84 128-214 9-96 (221)
69 KOG4212 RNA-binding protein hn 98.6 1.3E-07 2.8E-12 103.9 8.7 79 127-206 43-122 (608)
70 KOG0123 Polyadenylate-binding 98.6 1.6E-07 3.5E-12 105.7 8.8 74 131-207 79-152 (369)
71 KOG0151 Predicted splicing reg 98.5 2.7E-07 5.8E-12 106.6 9.1 87 122-208 168-257 (877)
72 KOG0146 RNA-binding protein ET 98.5 1.9E-07 4.1E-12 97.1 7.1 82 127-209 18-102 (371)
73 KOG0110 RNA-binding protein (R 98.5 1.4E-07 3.1E-12 109.3 6.0 92 125-217 610-701 (725)
74 KOG1457 RNA binding protein (c 98.5 1E-06 2.2E-11 89.9 11.3 82 127-208 33-118 (284)
75 KOG0132 RNA polymerase II C-te 98.5 2.3E-07 5.1E-12 108.1 7.5 75 128-208 421-495 (894)
76 KOG0153 Predicted RNA-binding 98.4 5.9E-07 1.3E-11 96.9 8.2 79 123-207 223-302 (377)
77 KOG0110 RNA-binding protein (R 98.4 6.8E-07 1.5E-11 103.9 8.2 78 128-206 515-596 (725)
78 KOG1548 Transcription elongati 98.4 9.7E-07 2.1E-11 95.2 8.1 82 125-207 131-220 (382)
79 KOG0123 Polyadenylate-binding 98.3 9.5E-07 2.1E-11 99.5 7.8 74 129-208 2-75 (369)
80 KOG4205 RNA-binding protein mu 98.3 5E-07 1.1E-11 98.9 4.2 81 127-208 5-85 (311)
81 KOG0116 RasGAP SH3 binding pro 98.2 4.2E-06 9E-11 95.0 10.5 76 127-203 287-362 (419)
82 KOG1924 RhoA GTPase effector D 98.2 4.4E-06 9.6E-11 97.5 10.6 9 100-108 589-597 (1102)
83 KOG0533 RRM motif-containing p 98.2 3.4E-06 7.4E-11 89.1 8.1 81 126-207 81-161 (243)
84 KOG4212 RNA-binding protein hn 98.2 2.5E-06 5.5E-11 93.9 6.8 76 125-205 533-608 (608)
85 KOG0120 Splicing factor U2AF, 98.2 1.9E-06 4.2E-11 98.8 5.5 83 125-207 286-368 (500)
86 KOG4209 Splicing factor RNPS1, 98.2 2.9E-06 6.3E-11 89.6 6.3 80 125-205 98-177 (231)
87 KOG1924 RhoA GTPase effector D 98.1 7.5E-06 1.6E-10 95.7 9.7 6 128-133 641-646 (1102)
88 KOG4454 RNA binding protein (R 98.1 1.3E-06 2.8E-11 89.0 2.5 80 127-208 8-87 (267)
89 KOG4676 Splicing factor, argin 98.0 1.3E-06 2.7E-11 95.4 0.9 65 127-196 150-214 (479)
90 KOG2253 U1 snRNP complex, subu 98.0 0.00024 5.1E-09 82.9 17.8 34 602-636 514-547 (668)
91 KOG0106 Alternative splicing f 98.0 5.4E-06 1.2E-10 85.9 4.1 71 129-207 2-72 (216)
92 KOG4205 RNA-binding protein mu 98.0 8.6E-06 1.9E-10 89.3 5.8 81 127-208 96-176 (311)
93 KOG4849 mRNA cleavage factor I 97.9 0.00013 2.8E-09 78.8 13.5 77 131-219 348-425 (498)
94 PF04059 RRM_2: RNA recognitio 97.9 8.1E-05 1.8E-09 68.2 9.8 77 129-205 2-84 (97)
95 KOG4660 Protein Mei2, essentia 97.9 1.3E-05 2.7E-10 91.6 5.0 72 125-201 72-143 (549)
96 KOG1190 Polypyrimidine tract-b 97.6 0.00029 6.2E-09 77.8 10.7 76 128-208 297-373 (492)
97 KOG2416 Acinus (induces apopto 97.5 0.00028 6.1E-09 81.0 8.9 77 125-207 441-521 (718)
98 KOG1995 Conserved Zn-finger pr 97.5 0.00023 5E-09 77.9 7.1 84 125-208 63-154 (351)
99 KOG1029 Endocytic adaptor prot 97.5 0.029 6.3E-07 66.6 24.3 12 293-304 257-268 (1118)
100 KOG1457 RNA binding protein (c 97.4 0.00043 9.3E-09 71.1 8.0 67 126-196 208-274 (284)
101 KOG0147 Transcriptional coacti 97.4 0.00011 2.3E-09 84.0 3.6 84 125-209 176-259 (549)
102 PF11608 Limkain-b1: Limkain b 97.4 0.00051 1.1E-08 60.8 6.7 70 129-208 3-77 (90)
103 KOG4307 RNA binding protein RB 97.3 0.011 2.4E-07 69.3 17.8 76 128-204 867-943 (944)
104 KOG4849 mRNA cleavage factor I 97.2 0.00053 1.2E-08 74.2 6.6 90 125-214 77-169 (498)
105 KOG4211 Splicing factor hnRNP- 97.2 0.00087 1.9E-08 75.9 8.0 75 127-205 9-83 (510)
106 KOG2314 Translation initiation 97.1 0.0015 3.2E-08 74.8 9.0 81 127-208 57-144 (698)
107 KOG3152 TBP-binding protein, a 97.0 0.00037 8.1E-09 73.0 2.5 88 128-215 74-174 (278)
108 KOG1456 Heterogeneous nuclear 97.0 0.018 3.9E-07 63.3 15.1 77 125-206 284-361 (494)
109 KOG4210 Nuclear localization s 96.9 0.00045 9.7E-09 75.5 2.7 81 127-208 183-264 (285)
110 KOG4206 Spliceosomal protein s 96.9 0.0042 9E-08 64.5 9.0 77 125-206 143-220 (221)
111 PF08777 RRM_3: RNA binding mo 96.8 0.0068 1.5E-07 56.6 8.6 85 129-219 2-93 (105)
112 COG5175 MOT2 Transcriptional r 96.5 0.0065 1.4E-07 65.8 7.7 88 128-217 114-210 (480)
113 KOG0106 Alternative splicing f 96.4 0.0033 7.2E-08 65.5 4.3 70 125-202 96-165 (216)
114 KOG4211 Splicing factor hnRNP- 96.1 0.015 3.2E-07 66.3 8.0 75 127-203 102-177 (510)
115 KOG1855 Predicted RNA-binding 96.1 0.0049 1.1E-07 68.9 4.0 77 118-194 221-310 (484)
116 KOG0129 Predicted RNA-binding 95.8 0.017 3.6E-07 66.2 6.8 65 125-189 367-432 (520)
117 KOG1190 Polypyrimidine tract-b 95.7 0.021 4.5E-07 63.6 6.5 80 125-208 411-491 (492)
118 KOG1548 Transcription elongati 95.6 0.03 6.4E-07 61.4 7.1 79 126-208 263-352 (382)
119 KOG4307 RNA binding protein RB 95.5 0.044 9.5E-07 64.6 8.7 77 127-204 433-510 (944)
120 PF08952 DUF1866: Domain of un 95.5 0.054 1.2E-06 53.2 8.0 71 126-205 25-104 (146)
121 KOG4676 Splicing factor, argin 95.1 0.033 7.2E-07 61.8 5.8 83 129-211 8-93 (479)
122 KOG1365 RNA-binding protein Fu 95.1 0.045 9.7E-07 60.6 6.6 76 127-203 279-357 (508)
123 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.066 1.4E-06 49.6 6.6 79 128-208 6-92 (100)
124 KOG0120 Splicing factor U2AF, 94.7 0.072 1.6E-06 62.0 7.4 64 144-207 425-491 (500)
125 KOG0128 RNA-binding protein SA 94.7 0.012 2.7E-07 70.6 1.2 79 128-207 736-814 (881)
126 KOG0129 Predicted RNA-binding 94.4 0.83 1.8E-05 52.9 14.6 76 127-205 258-338 (520)
127 KOG0112 Large RNA-binding prot 94.3 0.072 1.6E-06 64.7 6.4 84 124-213 451-536 (975)
128 PF14605 Nup35_RRM_2: Nup53/35 94.0 0.1 2.2E-06 42.6 5.0 52 129-187 2-53 (53)
129 KOG0128 RNA-binding protein SA 93.5 0.01 2.2E-07 71.4 -2.5 76 127-202 666-741 (881)
130 KOG4285 Mitotic phosphoprotein 93.4 1.8 4E-05 47.0 14.2 64 129-200 198-261 (350)
131 KOG2193 IGF-II mRNA-binding pr 93.3 0.11 2.3E-06 58.3 5.0 77 129-212 2-80 (584)
132 KOG1996 mRNA splicing factor [ 93.3 0.2 4.3E-06 53.9 6.8 63 144-206 302-365 (378)
133 KOG0115 RNA-binding protein p5 92.8 0.094 2E-06 55.6 3.6 63 128-191 31-93 (275)
134 KOG1923 Rac1 GTPase effector F 92.8 0.36 7.8E-06 58.1 8.7 7 144-150 405-411 (830)
135 KOG1365 RNA-binding protein Fu 92.2 0.25 5.3E-06 55.0 5.9 79 128-220 161-243 (508)
136 KOG0105 Alternative splicing f 92.1 0.64 1.4E-05 47.2 8.1 63 127-196 114-176 (241)
137 KOG1456 Heterogeneous nuclear 91.1 0.6 1.3E-05 51.8 7.4 79 128-211 120-202 (494)
138 PTZ00121 MAEBL; Provisional 90.9 9.1 0.0002 49.6 17.8 11 178-188 941-951 (2084)
139 PTZ00266 NIMA-related protein 90.8 2.6 5.6E-05 53.8 13.5 21 742-762 874-894 (1021)
140 KOG0112 Large RNA-binding prot 90.3 0.069 1.5E-06 64.8 -0.7 80 126-206 370-449 (975)
141 KOG4574 RNA-binding protein (c 89.7 0.7 1.5E-05 56.1 6.9 75 128-208 298-374 (1007)
142 KOG2068 MOT2 transcription fac 89.3 0.17 3.6E-06 55.7 1.3 87 128-217 77-170 (327)
143 PF08675 RNA_bind: RNA binding 88.0 1.6 3.5E-05 39.1 6.3 55 129-191 9-63 (87)
144 KOG2202 U2 snRNP splicing fact 87.7 0.27 5.9E-06 52.2 1.7 64 144-208 84-148 (260)
145 PF15023 DUF4523: Protein of u 87.4 2.1 4.6E-05 42.0 7.3 75 125-207 83-161 (166)
146 KOG4661 Hsp27-ERE-TATA-binding 86.9 4.4 9.5E-05 47.4 10.6 6 191-196 429-434 (940)
147 KOG2891 Surface glycoprotein [ 86.6 14 0.0003 39.9 13.4 67 127-193 148-245 (445)
148 PF10309 DUF2414: Protein of u 85.7 2.8 6E-05 35.5 6.3 55 128-190 5-62 (62)
149 PF04847 Calcipressin: Calcipr 85.1 2 4.2E-05 44.3 6.2 60 143-208 10-71 (184)
150 KOG2591 c-Mpl binding protein, 84.6 7.1 0.00015 45.8 10.9 69 127-202 174-246 (684)
151 KOG4660 Protein Mei2, essentia 84.4 1.9 4.1E-05 50.4 6.3 89 129-217 389-484 (549)
152 PF03467 Smg4_UPF3: Smg-4/UPF3 82.5 2.2 4.7E-05 43.7 5.3 81 127-207 6-97 (176)
153 TIGR03687 pupylate_cterm ubiqu 79.2 2.7 6E-05 30.6 3.3 24 800-823 4-27 (33)
154 KOG2135 Proteins containing th 77.4 1.3 2.8E-05 50.8 1.9 75 127-208 371-446 (526)
155 PF07576 BRAP2: BRCA1-associat 76.4 18 0.0004 34.1 9.0 67 128-196 13-80 (110)
156 KOG4210 Nuclear localization s 75.7 2.1 4.5E-05 47.2 2.9 82 127-208 87-168 (285)
157 PF03880 DbpA: DbpA RNA bindin 72.6 15 0.00032 32.0 6.9 67 130-205 2-74 (74)
158 PF11517 Nab2: Nuclear abundan 71.3 21 0.00045 32.9 7.5 74 764-837 8-83 (107)
159 KOG1925 Rac1 GTPase effector F 69.6 8.8 0.00019 44.5 6.0 27 125-151 303-329 (817)
160 KOG2318 Uncharacterized conser 69.1 16 0.00035 43.3 8.0 78 125-202 171-300 (650)
161 COG5178 PRP8 U5 snRNP spliceos 68.5 3.9 8.5E-05 51.3 3.1 33 127-159 71-103 (2365)
162 KOG3671 Actin regulatory prote 64.8 66 0.0014 37.8 11.6 29 130-158 483-511 (569)
163 PF03276 Gag_spuma: Spumavirus 61.6 22 0.00049 41.9 7.3 13 175-187 325-337 (582)
164 KOG0226 RNA-binding proteins [ 61.4 23 0.0005 38.1 6.8 69 130-199 98-169 (290)
165 KOG0804 Cytoplasmic Zn-finger 58.7 26 0.00057 40.5 7.1 68 127-196 73-141 (493)
166 PHA03378 EBNA-3B; Provisional 58.2 84 0.0018 38.2 11.2 9 141-149 821-829 (991)
167 KOG4364 Chromatin assembly fac 57.9 2.2E+02 0.0048 34.8 14.6 7 181-187 83-89 (811)
168 KOG2375 Protein interacting wi 54.9 48 0.001 41.0 8.9 12 8-19 546-557 (756)
169 PF11767 SET_assoc: Histone ly 54.0 45 0.00097 28.7 6.2 55 139-202 11-65 (66)
170 KOG0307 Vesicle coat complex C 53.5 90 0.002 40.0 11.1 11 143-153 953-963 (1049)
171 KOG1984 Vesicle coat complex C 53.1 1.1E+02 0.0024 38.3 11.5 10 785-794 989-998 (1007)
172 KOG3702 Nuclear polyadenylated 52.9 16 0.00034 44.0 4.3 64 765-828 21-84 (681)
173 KOG1984 Vesicle coat complex C 51.5 64 0.0014 40.3 9.1 11 197-207 358-368 (1007)
174 KOG2888 Putative RNA binding p 50.9 11 0.00024 41.6 2.5 19 199-217 162-180 (453)
175 PF05639 Pup: Pup-like protein 50.7 6 0.00013 34.1 0.4 24 799-822 39-62 (69)
176 KOG0151 Predicted splicing reg 46.8 5.9 0.00013 47.7 -0.3 10 207-216 543-552 (877)
177 KOG4019 Calcineurin-mediated s 45.5 15 0.00034 37.5 2.4 76 127-208 9-90 (193)
178 PF11600 CAF-1_p150: Chromatin 44.3 4E+02 0.0088 28.0 16.2 11 501-511 162-172 (216)
179 KOG4410 5-formyltetrahydrofola 43.5 1.1E+02 0.0025 33.4 8.5 50 127-182 329-379 (396)
180 KOG4246 Predicted DNA-binding 41.1 12 0.00027 45.7 1.1 9 1-9 1-9 (1194)
181 KOG0162 Myosin class I heavy c 40.4 1.8E+02 0.0038 36.0 10.2 8 151-158 1071-1078(1106)
182 cd07354 HN_L-delphilin-R1_like 38.6 60 0.0013 28.9 4.7 48 773-821 9-59 (80)
183 KOG4483 Uncharacterized conser 38.0 3.9E+02 0.0084 30.9 11.9 55 128-189 391-446 (528)
184 KOG2135 Proteins containing th 37.4 36 0.00079 39.6 4.0 61 767-827 8-72 (526)
185 KOG4454 RNA binding protein (R 35.7 9.7 0.00021 40.0 -0.7 76 126-202 78-157 (267)
186 KOG2888 Putative RNA binding p 34.9 45 0.00097 37.1 4.1 15 144-158 85-99 (453)
187 KOG0917 Uncharacterized conser 34.4 3.8E+02 0.0082 29.4 10.7 7 175-181 314-320 (338)
188 KOG3938 RGS-GAIP interacting p 33.7 47 0.001 36.0 3.9 57 771-827 263-322 (334)
189 PF05518 Totivirus_coat: Totiv 33.4 3E+02 0.0065 34.3 11.0 20 4-23 624-643 (759)
190 COG5178 PRP8 U5 snRNP spliceos 32.1 41 0.00088 43.0 3.5 17 63-79 6-22 (2365)
191 PF09707 Cas_Cas2CT1978: CRISP 32.0 68 0.0015 29.1 4.1 50 127-179 24-73 (86)
192 KOG1985 Vesicle coat complex C 31.6 3E+02 0.0065 34.6 10.5 8 173-180 230-237 (887)
193 KOG2295 C2H2 Zn-finger protein 30.8 9.2 0.0002 45.0 -2.0 71 128-198 231-301 (648)
194 PF13797 Post_transc_reg: Post 29.9 1.2E+02 0.0027 27.4 5.4 58 764-821 5-67 (87)
195 KOG2193 IGF-II mRNA-binding pr 29.2 3.8 8.2E-05 46.5 -5.2 75 127-205 79-154 (584)
196 KOG2891 Surface glycoprotein [ 29.1 8E+02 0.017 26.9 13.1 25 171-195 76-104 (445)
197 PRK14950 DNA polymerase III su 28.4 2.1E+02 0.0045 34.9 8.8 13 193-205 496-508 (585)
198 KOG4008 rRNA processing protei 27.3 99 0.0021 33.1 4.9 34 125-158 37-70 (261)
199 PRK11558 putative ssRNA endonu 27.1 72 0.0016 29.6 3.5 50 128-180 27-76 (97)
200 PF15473 PCNP: PEST, proteolyt 26.7 24 0.00051 34.9 0.3 18 603-620 88-105 (150)
201 COG0724 RNA-binding proteins ( 26.4 84 0.0018 32.2 4.4 65 125-189 222-286 (306)
202 PF02607 B12-binding_2: B12 bi 26.2 1.8E+02 0.0039 24.9 5.8 51 770-825 3-54 (79)
203 KOG1985 Vesicle coat complex C 24.8 3.7E+02 0.008 33.9 9.7 23 183-205 221-246 (887)
204 PF15208 Rab15_effector: Rab15 24.4 67 0.0015 33.6 3.0 35 756-796 21-69 (236)
205 TIGR01795 CM_mono_cladeE monof 24.4 2.5E+02 0.0054 25.7 6.5 38 803-840 52-91 (94)
206 KOG1925 Rac1 GTPase effector F 23.6 1.8E+02 0.0039 34.3 6.4 9 630-638 753-761 (817)
207 cd07347 harmonin_N_like N-term 23.4 2.4E+02 0.0052 25.1 5.9 60 769-828 5-64 (78)
208 PF08926 DUF1908: Domain of un 21.3 1.9E+02 0.0041 31.7 5.8 27 802-828 190-223 (282)
209 PF09932 DUF2164: Uncharacteri 20.5 2.2E+02 0.0047 25.2 5.1 63 761-824 8-71 (76)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=7.5e-68 Score=594.51 Aligned_cols=606 Identities=32% Similarity=0.484 Sum_probs=367.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+..+||||||...|....+..++..||.|.+|+++. ||||.|.......+|+..|+-..++|..|.++++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 578999999999999999999999999999998754 99999999999999999999999999999998872
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhcccCCCcccccccccccCCCCCCCc---------ccccCCCCCCCCCCCCcCCccch
Q 003151 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVVTE 277 (844)
Q Consensus 207 ~~kk~le~~k~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~egd~~~~~~~~v~~~~~~~~ 277 (844)
.+-..- +.++... ......|.+..+ ....++-..+..+.|.+-..+..
T Consensus 110 q~~~n~-----------~k~~~~~------------~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~ 166 (668)
T KOG2253|consen 110 QTIENA-----------DKEKSIA------------NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRR 166 (668)
T ss_pred hhhcCc-----------cccccch------------hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhh
Confidence 221111 1100000 001111111100 00011111222233333333333
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccccccchhhhccccccccCccccc
Q 003151 278 EDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASD 357 (844)
Q Consensus 278 ede~~d~~~~ek~e~~~eer~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~re 357 (844)
....+|...++.+...+++... .+..+.+..+ ..+-.-..+.+.+..+ + |.+ +
T Consensus 167 ~~~e~d~h~~e~~~~~~~s~~~----~~~~~~~~~~-----~~e~~~~s~~~~s~td-----s----------~~~---~ 219 (668)
T KOG2253|consen 167 QIAEADDHCLELEKTETESNSA----LSKEAESKKS-----PFEDTKDSKRSFSSTD-----S----------GSE---S 219 (668)
T ss_pred hhHHHHHHHHHHHHhhcccccc----cCcccccccC-----chhhhchhhhhhcccC-----c----------ccc---c
Confidence 3333444444433333332222 1111111000 0000000000000000 0 000 0
Q ss_pred CCCCCCCCCCCCcccc-ccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003151 358 HDRPETSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREK 436 (844)
Q Consensus 358 ~~r~~~~~~~rsr~r~-rr~rdr~r~r~r~r~re~~r~~r~reRer~r~~r~~~~r~re~E~~y~er~r~we~RER~r~~ 436 (844)
..... +|.++. .+++.+.+.|.|...|.+.+.+.....+..|++|....+..++|+||+.|++.|+.|||.+++
T Consensus 220 d~~~~-----~s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~K 294 (668)
T KOG2253|consen 220 DSAEV-----NSSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEK 294 (668)
T ss_pred hhhhh-----cccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHH
Confidence 00000 011111 111222222222222222222222233556667888889999999999999999999999955
Q ss_pred HHHHHHHHhHHHH------HHHHHHhhhccccchhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003151 437 ERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEE 510 (844)
Q Consensus 437 ~re~ekerere~e------r~r~~e~~~d~dddr~d~rk~~r~~~~~~R~~~r~rE~e~d~~dR~rE~eE~~e~~rr~~e 510 (844)
.+++++.+|..+. ++++++|++||||++++ .+||++++|..|++++.+|+|+|.+||.+|++|++|+||+..+
T Consensus 295 e~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~ 373 (668)
T KOG2253|consen 295 EREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSE 373 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 5544444444332 46788999999999777 6999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHhhhcccccCCCc----cchhhhcccCCcccCCCCCCcccccCCCCCCCCCCCCCCCCCccccccccccc
Q 003151 511 EQLQQQQRDALKLLSDNAVNGSL----AEESAVESKGMDVEHDYHDDSIRENHMADPSSQNGNGDESTNVPIAASDMRQS 586 (844)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (844)
+..+.....+...+.+......+ .+...++..+........+.+++..|+.+- ..+..+-++- .+-....-
T Consensus 374 ~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~e-ee~~s~r~~~----~~d~~~~i 448 (668)
T KOG2253|consen 374 EEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDE-EEIKSQRDDY----KPDENDHI 448 (668)
T ss_pred hcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccch-hhcccchhhh----hhhhhhhh
Confidence 76544443334443333222222 133344444444445555555554444331 1011010000 00001123
Q ss_pred CCCccccccCcccCCCCccccCCcCCCCCCcccccccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhhcc
Q 003151 587 GNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNV 666 (844)
Q Consensus 587 ~~~~~~k~~~~~~~~~kr~~v~~vf~~~dde~~~~~~~kr~lvpl~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (844)
..+|...+.+++++++.+..+..+|-.-+...++....+...+||.|+.....+ .|+.++.+..++. -+-.|
T Consensus 449 ~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~k---k~~~~ 520 (668)
T KOG2253|consen 449 SHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAKK---KLPET 520 (668)
T ss_pred hcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCccccccc---cCCCc
Confidence 456777888888888888889988876544444556667789999987633222 2222222111111 00011
Q ss_pred CcchhhchHHHHhhhhhccccchhhcccccccccchhhhhhhhhcccccc----cccccccccCchhhhhhhHHhhhhcC
Q 003151 667 NSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRD----REHGLDKVKTPDNKKLLDAKQLIDMI 742 (844)
Q Consensus 667 ~~ke~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~i 742 (844)
+. .+.+ .++|.+-..++ ++.+.+.+ +.|++. +.+ .|.+++++||.+|
T Consensus 521 ~v--------------------~~~~--~d~Dk~v~~~k---k~vp~dyd~n~~~~~~~~---~nd-eK~~~~ksLI~tI 571 (668)
T KOG2253|consen 521 GV--------------------FRED--DDEDKNVHEKK---KLVPLDYDRNQARAHSGE---SND-EKRKRIKSLIETI 571 (668)
T ss_pred cc--------------------cccc--CCcccccchhh---hcccccCChhhcccccCC---cch-hHHHHHHhhcccC
Confidence 00 0000 11221111111 33333333 333322 222 2445799999999
Q ss_pred CCCchhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHH
Q 003151 743 PKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLK 822 (844)
Q Consensus 743 p~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~ 822 (844)
|++|++||+|+|+|+.||..+|+.+|+|||+|||+||||++|++||||||++|+.|..|++||++|.+||||+|++||+|
T Consensus 572 P~~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~K 651 (668)
T KOG2253|consen 572 PTEKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVK 651 (668)
T ss_pred CcchHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccc
Q 003151 823 MWRMLIFEIKKVETGLA 839 (844)
Q Consensus 823 lwr~life~~~~~~g~~ 839 (844)
||||||||+.+++.||+
T Consensus 652 mWRlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 652 MWRLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHHHhhhhhccCC
Confidence 99999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.75 E-value=1.2e-18 Score=152.71 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 003151 766 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 833 (844)
Q Consensus 766 ~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~-----~~~~l~~~l~~~ld~~a~~fv~~lwr~life~~~ 833 (844)
++|||||.+||+||||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||+|||+.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988654
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=1.7e-17 Score=144.21 Aligned_cols=71 Identities=42% Similarity=0.718 Sum_probs=67.8
Q ss_pred hhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003151 762 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 832 (844)
Q Consensus 762 ~~~~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~lwr~life~~ 832 (844)
.+..++|+|||+++|++|||++|++||+||+++|++|.+|+.++.+|..+++.+|+.||.+||+||||++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.64 E-value=1.5e-15 Score=168.44 Aligned_cols=82 Identities=11% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
...+++|||.+|+..+...+|+.||++||+|+..+||++..+...+|||||+|.+..+|.+||.+||..+|+|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34478999999999999999999999999999999999988888899999999999999999999999999999999975
Q ss_pred ec
Q 003151 205 DQ 206 (844)
Q Consensus 205 a~ 206 (844)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 53
No 5
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=5.6e-17 Score=167.71 Aligned_cols=89 Identities=21% Similarity=0.502 Sum_probs=75.9
Q ss_pred hhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhc--cCCHHHHHHHHHHhhh-HHHHHHHHHHH
Q 003151 748 ELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKMW 824 (844)
Q Consensus 748 ~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~--~~~~~~l~~~l~~~ld-~~a~~fv~~lw 824 (844)
+-+.-.||...| -.+.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.|+++|++||+ .+|..||-.||
T Consensus 29 ~~lekkVDmsKv----nleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW 104 (354)
T KOG2146|consen 29 ACLEKKVDMSKV----NLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELW 104 (354)
T ss_pred HHHhhhcchhhc----chhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHH
Confidence 444445555444 4567899999999999999999999999999975 6699999999999999 99999999999
Q ss_pred HHHHHHHHhhhhcccc
Q 003151 825 RMLIFEIKKVETGLAL 840 (844)
Q Consensus 825 r~life~~~~~~g~~~ 840 (844)
-|||-+.-+..+||..
T Consensus 105 ~LliS~a~~s~~giP~ 120 (354)
T KOG2146|consen 105 SLLISEASQSQYGIPA 120 (354)
T ss_pred HHHHhhccccccCCch
Confidence 9999877777777653
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.57 E-value=4.4e-14 Score=157.28 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=78.3
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..+.+|||+|||+.+++++|..+|++||.|.+++|++++.||.++|||||+|.+.++|..||..|||+.|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 347 ~~ 348 (352)
T TIGR01661 347 TN 348 (352)
T ss_pred cC
Confidence 65
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=3.9e-14 Score=138.92 Aligned_cols=81 Identities=19% Similarity=0.342 Sum_probs=77.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|..||.|.++.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|+|.|+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=1.2e-12 Score=145.82 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=79.0
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....++|||+|||+.+++++|+.+|..||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.++.|.|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 9
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.2e-13 Score=142.34 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 003151 118 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (844)
Q Consensus 118 ~p~~~~~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G 197 (844)
.+......+.+|+|||-.||...++.+|..+|-.||.|++.++..|+.|+.++|||||.|.++.++..||..|||+.|+-
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 34444557789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEee
Q 003151 198 QELMLKVD 205 (844)
Q Consensus 198 r~L~V~~a 205 (844)
+.|+|.+-
T Consensus 355 KRLKVQLK 362 (371)
T KOG0146|consen 355 KRLKVQLK 362 (371)
T ss_pred hhhhhhhc
Confidence 99998653
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.1e-13 Score=129.02 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=79.3
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..++|||||||++.++++.|.+||++||.|..|.+-.|+.+-.++|||||+|.+.++|..||+.|+|..|+.+.|.|+|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 774
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.5e-13 Score=138.81 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=79.5
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..|.+||||+-|++.+++..|+..|..||.|+.|.||++..||+++|||||+|++..+...|....+|..|+|+.|.|+|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
.-.
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 644
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.40 E-value=1.3e-12 Score=110.29 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.7
Q ss_pred EEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 131 LfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
|||+|||+.+++.+|+.+|+.||.|..+.++.+ .+|..+|||||.|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.8e-12 Score=135.96 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
...++.|||.|||+...+.+|+.+|.+||+|.+|.|+.+ .-.++|||||+|++.++|.+|-..|||..|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 345789999999999999999999999999999999997 566899999999999999999999999999999999998
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8765
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=1e-12 Score=146.29 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++.+|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.4e-12 Score=130.02 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=78.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|-|.|||..+++.+|+.||.+||.|..+.|++|+.||.++|||||.|.+.++|.+||..|||+.++.-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 5
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=6.6e-12 Score=140.21 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=79.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+...|+|.||||.|...+|..+|+.||.|..+.|++. ..|+.+|||||.|....+|..||..|||..|+||+|.|+||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 34678999999999999999999999999999999977 47888899999999999999999999999999999999999
Q ss_pred chhHHHH
Q 003151 206 QATREYL 212 (844)
Q Consensus 206 ~~~kk~l 212 (844)
...-.|-
T Consensus 194 V~Kd~ye 200 (678)
T KOG0127|consen 194 VDKDTYE 200 (678)
T ss_pred ccccccc
Confidence 8765554
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.7e-11 Score=124.72 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=77.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+.+|||-||++.+.+..|-++|+.||.|..++|++|..|.+++|||||.+.+.++|..||..|||+.++++.|.|.|-.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 3
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=5.8e-12 Score=128.82 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
+..-++||||+|+|.+..+.|+.+|..||.|+...|+.|+.||+++|||||+|.+.++|.+|+.. ..-.|+||+..+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34578999999999999999999999999999999999999999999999999999999999986 55689999988876
Q ss_pred e
Q 003151 205 D 205 (844)
Q Consensus 205 a 205 (844)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 5
No 19
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=8.9e-13 Score=129.59 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..+.-|||||||+..|+.+|..+|+.||.|+.|.+++|..||+++||||.-|++..++.-|+..|||..|.||.|+|+-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999743
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.27 E-value=1.4e-11 Score=144.73 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+||++.+++++|+.+|+.||.|.+++|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2.3e-11 Score=134.04 Aligned_cols=88 Identities=19% Similarity=0.358 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCH--HHHHHHHHHhCCcEeCCeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~--e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
....+||||||++.+++++|..+|+.||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3468999999999999999999999999999999994 577 89999999987 78999999999999999999998
Q ss_pred eechhHHHHHHHHHhh
Q 003151 204 VDQATREYLERYVDKK 219 (844)
Q Consensus 204 ~a~~~kk~le~~k~kk 219 (844)
-|.. .||..++..+
T Consensus 84 KAKP--~YLeRLkrER 97 (759)
T PLN03213 84 KAKE--HYLARLKREW 97 (759)
T ss_pred eccH--HHHHHHHHHH
Confidence 7654 5777776644
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.25 E-value=3e-11 Score=102.99 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=65.0
Q ss_pred EEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 131 LfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
|||+|||+.++.++|..+|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 99999999999999999999999999999999974
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.4e-11 Score=144.61 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=75.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
...++|||||||+.+++++|+.+|..||.|.+|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999974
No 24
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=2.8e-11 Score=127.64 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||||||+.+++.+|+.+|+.||.|.+|.|+.+. ..+|||||+|.+..+|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 357999999999999999995 899999999999988654
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.23 E-value=6.1e-11 Score=138.79 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...++|||||||+.+++++|+.+|..||.|..+.|+.+..+|.++|||||+|.+...|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 26
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.20 E-value=4.6e-11 Score=133.13 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=76.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G--r~L~V~~ 204 (844)
..++|||+|||+.+++++|+.+|+.||.|..+.|+.+..+|+++|||||+|.+.++|..||..||++.|.+ +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999999876 7889988
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8653
No 27
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=2.6e-11 Score=137.33 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.1
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeechh
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~~ 208 (844)
++|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 003151 209 RE 210 (844)
Q Consensus 209 kk 210 (844)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.1e-11 Score=126.07 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=82.8
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
.+|.+.|||+.|++.+++++|.-||+.||+|.+|.|++|..||.+..||||+|++.+++..|.-.|+.+.|+.+.|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHH
Q 003151 205 DQATRE 210 (844)
Q Consensus 205 a~~~kk 210 (844)
++++.+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 999866
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.19 E-value=2.7e-11 Score=121.36 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=77.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
-++|-|-||.+.++.++|+.+|.+||.|..|.|++|+.|+.++|||||-|.+..+|+.|+..|+|.+|+|+.|.|.+|..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999987754
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=4e-11 Score=117.70 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=70.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..+.||||||+..++..+|+.+|..||.|.+|.|... +.|||||+|+++.+|..|+..|+|..|.|..|.|.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999988775 45999999999999999999999999999999998775
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4.1e-11 Score=124.38 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=78.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
....||||.|+..++-+.|++.|.+||.|..++|++|..|+|++|||||.|-+.++|++||..|||..|++|.|+.+|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 141 RK 142 (321)
T KOG0148|consen 141 RK 142 (321)
T ss_pred cC
Confidence 64
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.1e-10 Score=120.19 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=83.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
+...++|.|.-||..+|.++|+.||+..|.|.+|++++|+.+|.+.|||||.|.++.+|++||..|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHH
Q 003151 205 DQATREYL 212 (844)
Q Consensus 205 a~~~kk~l 212 (844)
+.+....|
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 98876555
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=7.4e-11 Score=136.30 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=77.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999763
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=1.4e-10 Score=96.76 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.4
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
+|||+|||..++..+|+.+|..||.|..+.+..++ |.+.|||||+|.+...|..|+..|+|..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 889999999999999999999999999999999987
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.5e-10 Score=127.11 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=77.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~L~V~~a 205 (844)
.++-||||.||.++.+++|.-||.+.|.|-.++|+.|+.+|.++|||||+|++.+.|..||+.||+++|. |+.|.|+++
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 5889999999999999999999999999999999999999999999999999999999999999999997 999999887
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 162 va 163 (506)
T KOG0117|consen 162 VA 163 (506)
T ss_pred ee
Confidence 54
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=1.9e-10 Score=136.62 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=79.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+||++.+++++|+.+|+.||.|.+|+++.+ .+|.++|||||.|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4678999999999999999999999999999999999 699999999999999999999999999999999999999998
Q ss_pred hhHHHH
Q 003151 207 ATREYL 212 (844)
Q Consensus 207 ~~kk~l 212 (844)
......
T Consensus 363 ~k~~~~ 368 (562)
T TIGR01628 363 RKEQRR 368 (562)
T ss_pred CcHHHH
Confidence 764433
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=3.6e-11 Score=128.52 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=75.7
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
-|.||||.|++.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|+-|++.|||..++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999754
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=1.6e-10 Score=137.16 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=74.8
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+|||||||+.+++.+|+.+|+.||.|.+|+|+++..|++++|||||+|.+.++|.+||..||+..|.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999999899999999999999999999999999999999999999864
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.12 E-value=2.1e-10 Score=119.40 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+.||||+||++.+|+.+|+.||+.||.|.+|.|+.+ +...|||||+|.++.++..||. |||..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999995 89999999999986543
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=2.2e-10 Score=119.49 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=77.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||||||+.+++++|..+|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..|+|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998654
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=3.2e-10 Score=94.02 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.9
Q ss_pred ecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 133 VgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|+|..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999987
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=2.5e-10 Score=133.91 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~L~V~~a 205 (844)
..++|||+|||+.+++++|..+|+.||.|..++|+.| .+|+++|||||+|.+.++|..||..||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3689999999999999999999999999999999999 79999999999999999999999999999986 788777655
Q ss_pred c
Q 003151 206 Q 206 (844)
Q Consensus 206 ~ 206 (844)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 3
No 43
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.09 E-value=3.6e-10 Score=130.63 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999997 799999999999986
Q ss_pred ec
Q 003151 205 DQ 206 (844)
Q Consensus 205 a~ 206 (844)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 54
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.08 E-value=1.7e-09 Score=126.15 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 125 ~~~~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
.+++++|||+||++ .+++++|+.+|+.||.|.+|+|+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998862 5899999999999999999999999999999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8754
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=1.1e-10 Score=115.20 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=76.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
...|||||||+..+++..|.+||-.+|+|+.+++++|+.+...+|||||+|.+.++|.-|+..||.+.|.|++|+|+-+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999997543
No 46
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.5e-11 Score=118.98 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=79.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..+|||||+|...|++..|...|-.||.|..+.++.|-.+++++|||||+|...++|..||..||+.+|.|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhH
Q 003151 207 ATR 209 (844)
Q Consensus 207 ~~k 209 (844)
+.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 653
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=3.3e-10 Score=106.76 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=77.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+-.|||.++...+++++|...|+-||.|+.+.+..|+.||-.+||++|+|++...|+.||..|||..|.|.+|.|+|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999983
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.7e-10 Score=115.07 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
.+..|+||||||+..++++.|+..|+.||.|..|+|..+. ||+||.|++.++|..||..+||..|+|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 4568999999999999999999999999999999998875 9999999999999999999999999999999988
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
-..
T Consensus 235 GKe 237 (321)
T KOG0148|consen 235 GKE 237 (321)
T ss_pred ccc
Confidence 744
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.02 E-value=1.9e-09 Score=90.22 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.8
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
+|||+|||..++..+|..+|..||.|..+.+..++ .+.+.|+|||.|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999875 447889999999999999999999999999999999864
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=1.6e-09 Score=118.71 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=77.6
Q ss_pred CCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 124 ~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
..+.+.+|||++||....+.+|-..|..||.|++.++..|+.||.++|||||.|++..+|..||..|||+.|++++|+|.
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ee
Q 003151 204 VD 205 (844)
Q Consensus 204 ~a 205 (844)
+.
T Consensus 500 lk 501 (510)
T KOG0144|consen 500 LK 501 (510)
T ss_pred ee
Confidence 54
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=119.27 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=79.1
Q ss_pred CCCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE-eC--CeE
Q 003151 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQE 199 (844)
Q Consensus 123 ~~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~-I~--Gr~ 199 (844)
..+.....||||.||..+++.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+.++|.+|+.+||... |- ...
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 334567899999999999999999999999999999999999999999999999999999999999998754 33 477
Q ss_pred EEEEeechhHHHH
Q 003151 200 LMLKVDQATREYL 212 (844)
Q Consensus 200 L~V~~a~~~kk~l 212 (844)
|.|++++.-+..+
T Consensus 109 vqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 109 VQVKYADGERERI 121 (510)
T ss_pred eeecccchhhhcc
Confidence 8899988765443
No 52
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=2.5e-09 Score=96.76 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=72.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
-.+-|||.|||+.+|.+++..||++||.|..++|-. +...+|-|||.|++..+|.+|+.+|+|+.+.++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 367899999999999999999999999999999855 34567999999999999999999999999999999998876
Q ss_pred hhH
Q 003151 207 ATR 209 (844)
Q Consensus 207 ~~k 209 (844)
...
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 653
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3.6e-09 Score=118.75 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-----CC-cEeCCeEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQEL 200 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-----ng-~~I~Gr~L 200 (844)
...||||.|||+.|+++.|...|+.||.|.++.++.++.||.++|+|||.|.+...|..||... .| +.|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999999999999999999999999999999999865 34 88999999
Q ss_pred EEEeechhH
Q 003151 201 MLKVDQATR 209 (844)
Q Consensus 201 ~V~~a~~~k 209 (844)
.|..+...+
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999887653
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.90 E-value=4.1e-09 Score=123.03 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=68.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH--hCCcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL--LNKFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~--Lng~~I~Gr~L~V~~ 204 (844)
|+++|||+|||+.+++.+|+.+|+.||.|.+|.++.+ +|||||+|.+.++|..||.. +++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999864 38999999999999999986 478999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.89 E-value=1.7e-09 Score=121.94 Aligned_cols=79 Identities=25% Similarity=0.492 Sum_probs=74.3
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
...||||||.+++++.+|+.+|..||.|..|.+..|..||.++|||||+|.+.+.|.+|+..|||++|.|+.|+|.+-.
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3349999999999999999999999999999999997899999999999999999999999999999999999997653
No 56
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.86 E-value=1e-08 Score=120.10 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=61.6
Q ss_pred CCCCCcEEEecCCCCCCChHHHHHhhhcC------------CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003151 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVC------------GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (844)
Q Consensus 124 ~~~~~~tLfVgNLp~~vte~~Lr~lF~~~------------G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (844)
.....++|||||||+.+++.+|..+|..| +.|..+.+ ++.+|||||+|.+.++|..||. ||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34567899999999999999999999975 23333333 4557999999999999999995 99
Q ss_pred CcEeCCeEEEEEe
Q 003151 192 KFNIDGQELMLKV 204 (844)
Q Consensus 192 g~~I~Gr~L~V~~ 204 (844)
|+.|.|+.|.|..
T Consensus 244 g~~~~g~~l~v~r 256 (509)
T TIGR01642 244 SIIYSNVFLKIRR 256 (509)
T ss_pred CeEeeCceeEecC
Confidence 9999999999863
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.86 E-value=6.9e-09 Score=121.95 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=68.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcC--CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~--G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..++|||+||++.+++++|+.+|+.| |.|..|.++. +||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+.+.
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 9653
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.84 E-value=1.1e-08 Score=87.97 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.9
Q ss_pred hHHHHHhhh----cCCceeEEE-EeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 142 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 142 e~~Lr~lF~----~~G~I~s~k-i~~d~~t--Gk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
+++|+.+|. .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999995 6666556 999999999999999999999999999999999986
No 59
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=2.8e-08 Score=102.95 Aligned_cols=84 Identities=18% Similarity=0.386 Sum_probs=76.7
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
......||+|.|...++++.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|+..|||..++.+.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
....
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 4333
No 60
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=4.8e-09 Score=103.75 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=70.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||||||..+.+.+|..||.+||.|..|.+-.- ..+-+||||+|+++.+|.-||..-+|+.++|..|+|.|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4789999999999999999999999999999987432 3445899999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 53
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.82 E-value=3.8e-09 Score=110.94 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=66.9
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
..|||||||..+++..|+.||.+||+|..|.|+.+ ||||..++...+.-||+.|||+.|+|..|.|.-+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999999986 999999999999999999999999999999975544
No 62
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.82 E-value=2e-08 Score=82.19 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.7
Q ss_pred HHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 145 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 145 Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..++|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999986652 689999999999999999999999999999999986
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=6.4e-09 Score=111.56 Aligned_cols=95 Identities=26% Similarity=0.468 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCC-------CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHH
Q 003151 111 PVVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 183 (844)
Q Consensus 111 p~~~P~~~p~~~~~-------~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A 183 (844)
.++.|.++|+..+. ....+.|||..+.+..++++|+.+|..||.|++|.+.+++..+.++||||++|.+..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 35566666665543 44578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEeCCeEEEEEee
Q 003151 184 LRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 184 ~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..||..||-+.|+|..|+|.-+
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HHHhhhcchhhcccceEecccc
Confidence 9999999999999999999754
No 64
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=111.74 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=70.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
....|||.||+..+|++.|+.+|+.||.|..|+.++| ||||.|.+.++|.+||..|||+.|+|..|.|.+|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4678999999999999999999999999999998876 99999999999999999999999999999999998
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
+.
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 75
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.69 E-value=4.1e-08 Score=99.27 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.5
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcC-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~-G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
.....-+||+.||..+.+.++..+|..| |.|..+++.+++.||.++|||||+|++.+-|.-|-..||++-|+|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446679999999999999999999988 678888888999999999999999999999999999999999999999999
Q ss_pred eechh
Q 003151 204 VDQAT 208 (844)
Q Consensus 204 ~a~~~ 208 (844)
|=.+-
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86554
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.66 E-value=2.6e-08 Score=98.77 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.+||||||.+.+++..|..+|+.||.|.+. ++++++.||.++|||||.|.+.+.+.+||..|||..++.++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35799999999999999999999999988663 78888899999999999999999999999999999999999999887
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
-.
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 43
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=2.5e-08 Score=104.87 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 122 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 122 ~~~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
.......++||||||.+.|+..+|+..|.+||+|..|.|+.+ |+||.|.-.++|..|++.|||.+|.|+.++
T Consensus 72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceee
Confidence 334557899999999999999999999999999999999986 999999999999999999999999999999
Q ss_pred EEeechh
Q 003151 202 LKVDQAT 208 (844)
Q Consensus 202 V~~a~~~ 208 (844)
|.+..+.
T Consensus 144 vq~stsr 150 (346)
T KOG0109|consen 144 VQLSTSR 150 (346)
T ss_pred eeeeccc
Confidence 9987654
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=1e-07 Score=97.88 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=76.2
Q ss_pred CcEEEecCCCCCCChHHHHH----hhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 128 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~----lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
..||||.||+..+.-++|+. ||+.||.|..|.... +.+.+|-|||.|.+...|..|+..|+|+.+-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998887 999999999887653 78999999999999999999999999999999999999
Q ss_pred eechhHHHHHH
Q 003151 204 VDQATREYLER 214 (844)
Q Consensus 204 ~a~~~kk~le~ 214 (844)
+|....+.+..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99887777644
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.58 E-value=1.3e-07 Score=103.92 Aligned_cols=79 Identities=25% Similarity=0.416 Sum_probs=73.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhh-cCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~-~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..+.+||.|||+.+...+|+.||. +.|.|..|.+..| .+||++|||.|+|.+++.+++|++.||.+.+.|+.|.|+-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356799999999999999999998 8899999999999 69999999999999999999999999999999999999754
Q ss_pred c
Q 003151 206 Q 206 (844)
Q Consensus 206 ~ 206 (844)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 3
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.6e-07 Score=105.65 Aligned_cols=74 Identities=26% Similarity=0.475 Sum_probs=70.3
Q ss_pred EEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 131 LfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
|||.||++.++...|..+|+.||.|++|++.++. .| ++|| ||.|.+.++|.+||..|||..+.|++|.|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 9999999999999999999999999999999984 66 9999 9999999999999999999999999999987655
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=2.7e-07 Score=106.61 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q 003151 122 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (844)
Q Consensus 122 ~~~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~---~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr 198 (844)
...++..++||||||++.+++.+|...|+.||+|.+++|++-+ .......||||.|.+..+|.+|+..|+|..|.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3345668899999999999999999999999999999998865 2345678999999999999999999999999999
Q ss_pred EEEEEeechh
Q 003151 199 ELMLKVDQAT 208 (844)
Q Consensus 199 ~L~V~~a~~~ 208 (844)
.+++.|...+
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999998543
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.9e-07 Score=97.12 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=74.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC---CeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~---Gr~L~V~ 203 (844)
..++||||-|...-++++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|..||..|||-... ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999985 8999999999999999999999999997544 4679999
Q ss_pred eechhH
Q 003151 204 VDQATR 209 (844)
Q Consensus 204 ~a~~~k 209 (844)
|++..+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 987653
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=1.4e-07 Score=109.30 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....+.|+|.|||+..+-.+++.||..||.|.+|.|+.-...+.++|||||+|-++.+|.+|+.+|.++.|.||.|++.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 34468999999999999999999999999999999987656677899999999999999999999999999999999999
Q ss_pred echhHHHHHHHHH
Q 003151 205 DQATREYLERYVD 217 (844)
Q Consensus 205 a~~~kk~le~~k~ 217 (844)
+..--. ++....
T Consensus 690 A~~d~~-~e~~r~ 701 (725)
T KOG0110|consen 690 AKSDNT-MEALRE 701 (725)
T ss_pred hccchH-HHHHHH
Confidence 865433 444443
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.48 E-value=1e-06 Score=89.90 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=69.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEee-cCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC---CeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~-d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~---Gr~L~V 202 (844)
..+||||.+||.++...+|..||..|-....+.+-. ++...-++-+|||+|.+...|..|+..|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 478999999999999999999999997776665533 2222234579999999999999999999999998 899999
Q ss_pred Eeechh
Q 003151 203 KVDQAT 208 (844)
Q Consensus 203 ~~a~~~ 208 (844)
.++.+.
T Consensus 113 ElAKSN 118 (284)
T KOG1457|consen 113 ELAKSN 118 (284)
T ss_pred eehhcC
Confidence 998765
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.47 E-value=2.3e-07 Score=108.15 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=70.8
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
++|||||+|+..+++.+|..+|..||.|.+|.++..+ |||||.+....+|.+||..|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 6899999999999999999999999999999997764 9999999999999999999999999999999999864
Q ss_pred h
Q 003151 208 T 208 (844)
Q Consensus 208 ~ 208 (844)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 3
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=5.9e-07 Score=96.90 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=70.9
Q ss_pred CCCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH-HHhCCcEeCCeEEE
Q 003151 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELM 201 (844)
Q Consensus 123 ~~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al-~~Lng~~I~Gr~L~ 201 (844)
+.+....|||||+|...+++.+|+..|.+||.|.++.++... +||||+|.+..+|+.|. +.+|.+.|+|+.|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 345568899999999999999999999999999999997764 69999999999999776 56788999999999
Q ss_pred EEeech
Q 003151 202 LKVDQA 207 (844)
Q Consensus 202 V~~a~~ 207 (844)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999877
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=6.8e-07 Score=103.85 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=70.4
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCC----CCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tG----k~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
.++|||.||++.++...|..+|...|.|.++.|...+ .+ .+.|||||+|.++++|.+|++.|+|..|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887764 33 255999999999999999999999999999999999
Q ss_pred eec
Q 003151 204 VDQ 206 (844)
Q Consensus 204 ~a~ 206 (844)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 886
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.35 E-value=9.7e-07 Score=95.16 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=74.4
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
...++.|||.|||..+|.+++..+|++||.|.. |+|..+ ..|+.+|-|.|.|.-.+++.-|+.+|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344677999999999999999999999998864 688888 57999999999999999999999999999999
Q ss_pred CeEEEEEeech
Q 003151 197 GQELMLKVDQA 207 (844)
Q Consensus 197 Gr~L~V~~a~~ 207 (844)
|+.|+|..|.-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999987753
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.5e-07 Score=99.51 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=69.4
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeechh
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~~ 208 (844)
..|||| +.+|+..|..+|+.+|+|.++++.+|. | +.|||||.|.++.+|.+||..||...|.|++|+|.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999995 4 9999999999999999999999999999999999997654
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.29 E-value=5e-07 Score=98.86 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=72.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++||||+|+|.++++.|+..|.+||.|..|.++.++.+|.++||+||+|.++..+..+|.. .-+.|+|+.|.++-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999888874 5567888888887665
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 54
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.24 E-value=4.2e-06 Score=94.95 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=66.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
...+|||+|||++++..+|+.+|..||.|+...|..-...++..|||||+|.+..++..||.+ +-..|++++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 355699999999999999999999999999888765422456569999999999999999997 7899999999994
No 82
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=4.4e-06 Score=97.53 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 003151 100 PGIPGVRPI 108 (844)
Q Consensus 100 p~~pg~~P~ 108 (844)
+|.+|.+|+
T Consensus 589 ~g~~Gg~pp 597 (1102)
T KOG1924|consen 589 GGFLGGPPP 597 (1102)
T ss_pred CCCCCCCCC
Confidence 444444443
No 83
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.20 E-value=3.4e-06 Score=89.14 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=74.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...++|+|.||++.|.+.+|++||..||.+..+.|.+++ +|.+.|.|-|.|....+|..|+..|||+.++|+.|.+.+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 345889999999999999999999999999999998885 9999999999999999999999999999999999988765
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 44
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.18 E-value=2.5e-06 Score=93.95 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=69.8
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....|+|||.|||+++|...|+.-|..||.|.++.|+ ..|+++| .|.|.+++.|++|+..|||..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4457899999999999999999999999999999884 3688887 8999999999999999999999999999986
Q ss_pred e
Q 003151 205 D 205 (844)
Q Consensus 205 a 205 (844)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=1.9e-06 Score=98.78 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=77.8
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....+.+|||+||..+++..+.+++..||.+....++.+..+|.++|||||+|.++.-+..|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44578899999999999999999999999999999999998999999999999999999999999999999999999986
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
|-.
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 644
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.15 E-value=2.9e-06 Score=89.61 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=74.6
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....+.+||||+.+.++...+...|..||.|..+.+..+..+|.++||+||+|.+...+..|+. |||-.|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457899999999999999999999999999999999999888999999999999999999999 899999999999965
Q ss_pred e
Q 003151 205 D 205 (844)
Q Consensus 205 a 205 (844)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 4
No 87
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=7.5e-06 Score=95.67 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.7
Q ss_pred CcEEEe
Q 003151 128 QTKVYV 133 (844)
Q Consensus 128 ~~tLfV 133 (844)
..+.||
T Consensus 641 ~~cFWv 646 (1102)
T KOG1924|consen 641 ENCFWV 646 (1102)
T ss_pred ccceee
Confidence 344444
No 88
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.11 E-value=1.3e-06 Score=89.02 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..+||||+|+...|+++.|.++|-..|+|..+.|..+. .++.+ ||||.|.+..+..-|+.+|||..+.+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 47899999999999999999999999999999998874 77777 99999999999999999999999999999998755
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
.+
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 43
No 89
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.04 E-value=1.3e-06 Score=95.36 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=54.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
..+||+|++|+..+...++..+|..+|.|....+ +.|...-||.+.|....+...|+.. +|..+.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~----ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHT----ASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhh----hccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 3589999999999999999999999999887766 3555566888999999999999985 776653
No 90
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.98 E-value=0.00024 Score=82.86 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=26.6
Q ss_pred CCccccCCcCCCCCCcccccccCCCCcccCCCChH
Q 003151 602 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 636 (844)
Q Consensus 602 ~kr~~v~~vf~~~dde~~~~~~~kr~lvpl~y~~e 636 (844)
.+.+.+.+||+.++|.|.+--.++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356789999999988875544444 9999999985
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=5.4e-06 Score=85.93 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=65.3
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
..||||+||+.+.+.+|..||..||.|..+.+.. |||||+|.+..+|.-|+..|||..|.|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3699999999999999999999999999988744 7999999999999999999999999999988887764
No 92
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.97 E-value=8.6e-06 Score=89.30 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=74.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
....||||+||..+++.+|+.+|.+||.|..+.++.|..+..++|||||.|.+.+++..++.. +-+.|.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeecc
Confidence 466999999999999999999999999999999999999999999999999999999988874 8889999999998776
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
+.
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 64
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.93 E-value=0.00013 Score=78.78 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=51.7
Q ss_pred EEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHH-HHHHHhCCcEeCCeEEEEEeechhH
Q 003151 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL-RALRLLNKFNIDGQELMLKVDQATR 209 (844)
Q Consensus 131 LfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~-~Al~~Lng~~I~Gr~L~V~~a~~~k 209 (844)
+.|+--.+.+++.+++.++.+.-.|.+..|.+. .++.+.| .|.+..+.. .||.++. .-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lIK-------qSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLIK-------QSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHHH-------hhccccchHHH
Confidence 455555667889999999999988888776554 4666666 566655544 6776653 34466667777
Q ss_pred HHHHHHHHhh
Q 003151 210 EYLERYVDKK 219 (844)
Q Consensus 210 k~le~~k~kk 219 (844)
.+|..++.+-
T Consensus 416 vLissL~dcL 425 (498)
T KOG4849|consen 416 VLISSLEDCL 425 (498)
T ss_pred HHHHHHHHHH
Confidence 7776555443
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.89 E-value=8.1e-05 Score=68.24 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=67.5
Q ss_pred cEEEecCCCCCCChHHHHHhhhc--CCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC----CeEEEE
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 202 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~--~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~----Gr~L~V 202 (844)
+||-|.|||...+..+|..++.. .|..--+.++.|..++-..|||||.|.++..|..-...++|.... .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999888874 367777889999889999999999999999999999999999875 566677
Q ss_pred Eee
Q 003151 203 KVD 205 (844)
Q Consensus 203 ~~a 205 (844)
.+|
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 776
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=1.3e-05 Score=91.56 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.9
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
..+..+|+|-|||..|+.++|+.+|+.||.|+.+.. |-...|..||+|.|..+|.+|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445789999999999999999999999999999654 444568999999999999999999999999998887
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.64 E-value=0.00029 Score=77.85 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=67.8
Q ss_pred CcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 128 ~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+.|.|.||.. .+|.+.|..+|+.||.|..|+|..++. --|.|.|.+...|.-|+.+|+|..|.|++|+|.+..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999876 689999999999999999999988742 469999999999999999999999999999998775
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
-+
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 97
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.51 E-value=0.00028 Score=80.97 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhh-cCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe---CCeEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQEL 200 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~-~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I---~Gr~L 200 (844)
..+.+.|||.||-.-+|.-.|+.|++ .||.|... +.| +.+..|||.|.+.++|...+.+|||+.. +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45688999999999999999999999 66777666 233 3456899999999999999999999864 47778
Q ss_pred EEEeech
Q 003151 201 MLKVDQA 207 (844)
Q Consensus 201 ~V~~a~~ 207 (844)
.|.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8887654
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00023 Score=77.86 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
.....+|||-+||..++..+|..+|.+||.|.. +.|.+++.|++++|=|.|.|.++..|+.||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 335679999999999999999999999998854 567788899999999999999999999999999999999
Q ss_pred CeEEEEEeechh
Q 003151 197 GQELMLKVDQAT 208 (844)
Q Consensus 197 Gr~L~V~~a~~~ 208 (844)
|..|.|.++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999988766543
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.029 Score=66.62 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.7
Q ss_pred HHHHhhhCCCCC
Q 003151 293 MVEERLKTNPLP 304 (844)
Q Consensus 293 ~~eer~~~~~~~ 304 (844)
||+-...+-++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 343333344433
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.42 E-value=0.00043 Score=71.15 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
.-+.||||.||...|+++.|+.+|+.|-....++|-. ..| .+.+|++|++.+.|..|+..|.|..|-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 3477999999999999999999999998776666622 122 358999999999999999999998763
No 101
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.39 E-value=0.00011 Score=84.05 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=77.5
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
....+|||+-.|+..++..+|..||+.+|+|..|.++.|+.++.++|.|||+|.+..+...||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4457899999999999999999999999999999999999999999999999999999999995 799999999999987
Q ss_pred echhH
Q 003151 205 DQATR 209 (844)
Q Consensus 205 a~~~k 209 (844)
...-+
T Consensus 255 sEaek 259 (549)
T KOG0147|consen 255 SEAEK 259 (549)
T ss_pred cHHHH
Confidence 66543
No 102
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.36 E-value=0.00051 Score=60.76 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=49.3
Q ss_pred cEEEecCCCCCCChH----HHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 129 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 129 ~tLfVgNLp~~vte~----~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
..|||.|||...... -|+.|+..|| +|.++. | +.|++-|.+.+.|.+|..-|+|-.+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 569999999988875 5778888998 565541 1 689999999999999999999999999999999
Q ss_pred eechh
Q 003151 204 VDQAT 208 (844)
Q Consensus 204 ~a~~~ 208 (844)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.26 E-value=0.011 Score=69.34 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=65.9
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCcee-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~-s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
++.|-|.|+|+.++-++|.+||.-|-.+- +|.+-++ ..|++.|-|.|.|++.++|.+|..-|++..|..+.+.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 44788999999999999999999997664 4444344 7899999999999999999999999999999999988754
No 104
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.00053 Score=74.20 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=74.4
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G--~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
.....++|||||-|.+|+.+|.+.+...| .+..+++.-++.+|.++|||+|...+..+....+.+|.-..|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34567999999999999999999988887 5778888889999999999999999999999999999999999987655
Q ss_pred E-eechhHHHHHH
Q 003151 203 K-VDQATREYLER 214 (844)
Q Consensus 203 ~-~a~~~kk~le~ 214 (844)
- ++......++.
T Consensus 157 ~~~NK~~~ak~E~ 169 (498)
T KOG4849|consen 157 LSYNKTNQAKLED 169 (498)
T ss_pred eccchhhHHHHHH
Confidence 4 33333333433
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.20 E-value=0.00087 Score=75.92 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=65.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...-|-+.+|||.||+.+|..||+.|+ |..+.+.+ .+|++.|=|||+|.+.+++..||+. +...++.+-|.|--+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 355677889999999999999999997 77766655 5899999999999999999999995 888899999998644
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0015 Score=74.83 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCcEEEecCCCCCCCh------HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeE
Q 003151 127 PQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQE 199 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte------~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~ 199 (844)
-...|+|-|+|-.-.. ..|..+|+++|+|....++.+. .|+++||.|++|.+..+|..|+..|||+.|+ ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4678999999853322 2567899999999999999885 5669999999999999999999999999998 677
Q ss_pred EEEEeechh
Q 003151 200 LMLKVDQAT 208 (844)
Q Consensus 200 L~V~~a~~~ 208 (844)
+.|..-...
T Consensus 136 f~v~~f~d~ 144 (698)
T KOG2314|consen 136 FFVRLFKDF 144 (698)
T ss_pred EEeehhhhH
Confidence 777644443
No 107
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.00 E-value=0.00037 Score=73.02 Aligned_cols=88 Identities=26% Similarity=0.308 Sum_probs=68.9
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCC--------CCCccE----EEEEeCCHHHHHHHHHHhCCcEe
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKGF----GFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~t--------Gk~kGf----gFVeF~~~e~A~~Al~~Lng~~I 195 (844)
.-.||+++||+.+...-|++||+.||.|-.|.+.....+ |...++ |+|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999999988665433 333333 78999999999999999999999
Q ss_pred CCeEE-EEEeechhHHHHHHH
Q 003151 196 DGQEL-MLKVDQATREYLERY 215 (844)
Q Consensus 196 ~Gr~L-~V~~a~~~kk~le~~ 215 (844)
+|++- .+..+....+||-.|
T Consensus 154 ggkk~S~~~~dlWNmKYLprF 174 (278)
T KOG3152|consen 154 GGKKKSPFRDDLWNMKYLPRF 174 (278)
T ss_pred CCCCCCchHHhhhhhhhccCc
Confidence 98764 343344455555433
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.97 E-value=0.018 Score=63.34 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=67.7
Q ss_pred CCCCcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 125 ~~~~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
..+++.+.|-+|.. .++.+.|..||..||.|..+++++.+ . |-|.|++.+....++||.+||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 44678899999987 45667999999999999999998863 2 689999999999999999999999999999998
Q ss_pred eec
Q 003151 204 VDQ 206 (844)
Q Consensus 204 ~a~ 206 (844)
++.
T Consensus 359 ~Sk 361 (494)
T KOG1456|consen 359 VSK 361 (494)
T ss_pred ecc
Confidence 764
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.94 E-value=0.00045 Score=75.49 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=73.4
Q ss_pred CCcEEE-ecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLf-VgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+..++| |+||++.++.++|+..|..||.|..+++..++.+|.+.|||||.|.....+..++.. ....|+++.+.|..+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 999999999999999999999999999999999999999999999999999999987 889999999999766
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 553
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.88 E-value=0.0042 Score=64.46 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=68.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~L~V~ 203 (844)
.++..++|+.|||..++.+.|..+|..|+....+.++... .+.+||+|.+...+..|...|.|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5578899999999999999999999999999999987652 379999999999999999999999988 7888887
Q ss_pred eec
Q 003151 204 VDQ 206 (844)
Q Consensus 204 ~a~ 206 (844)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 664
No 111
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.75 E-value=0.0068 Score=56.57 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=53.3
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--C---CcEeCCeEEEEE
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--N---KFNIDGQELMLK 203 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L--n---g~~I~Gr~L~V~ 203 (844)
+.|+|.+++..|+-.+|+.+|+.||.|..|.+...- .-|||-|.+++.|..|+..+ . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999998886542 47999999999999999765 3 457777777776
Q ss_pred ee--chhHHHHHHHHHhh
Q 003151 204 VD--QATREYLERYVDKK 219 (844)
Q Consensus 204 ~a--~~~kk~le~~k~kk 219 (844)
+- ..-..|+..+.+.+
T Consensus 76 vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 64 34467777766644
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.54 E-value=0.0065 Score=65.81 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred CcEEEecCCCCCCChHH------HHHhhhcCCceeEEEEeecC-CCCCCcc-E-EEEEeCCHHHHHHHHHHhCCcEeCCe
Q 003151 128 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP-SNGTPKG-F-GFCEFESAEGVLRALRLLNKFNIDGQ 198 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~------Lr~lF~~~G~I~s~ki~~d~-~tGk~kG-f-gFVeF~~~e~A~~Al~~Lng~~I~Gr 198 (844)
..-|||-+||+.+..++ -.++|+.||.|..+.|-... ......+ + .||+|...++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887664 34799999999988775432 1111222 2 39999999999999999999999999
Q ss_pred EEEEEeechhHHHHHHHHH
Q 003151 199 ELMLKVDQATREYLERYVD 217 (844)
Q Consensus 199 ~L~V~~a~~~kk~le~~k~ 217 (844)
.|+..+. +-+|...|..
T Consensus 194 ~lkatYG--TTKYCtsYLR 210 (480)
T COG5175 194 VLKATYG--TTKYCTSYLR 210 (480)
T ss_pred eEeeecC--chHHHHHHHc
Confidence 9987654 5567777764
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.38 E-value=0.0033 Score=65.54 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.0
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
....+.++|-|++..+...+|...|..+|.+....+ ..+|+||.|....++..||..|+|..|.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 345788999999999999999999999999844333 3379999999999999999999999999999998
No 114
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.13 E-value=0.015 Score=66.27 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=62.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
+...|-+.+||+.|++.+|.+||+..-.|.. +.++.+ ..|++.|=|||.|++.+.|+.||.. |...|+.+-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 4567889999999999999999997754444 445666 4788999999999999999999986 7788888888874
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.10 E-value=0.0049 Score=68.88 Aligned_cols=77 Identities=23% Similarity=0.384 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeec---CC--CCCC--------ccEEEEEeCCHHHHH
Q 003151 118 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PS--NGTP--------KGFGFCEFESAEGVL 184 (844)
Q Consensus 118 ~p~~~~~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d---~~--tGk~--------kGfgFVeF~~~e~A~ 184 (844)
+|......-+.+||.+.|||..-.-+-|..||+.||.|++|+|..- +. .|.+ +-||||+|...+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 3444444557999999999998888999999999999999998765 22 2222 467999999999999
Q ss_pred HHHHHhCCcE
Q 003151 185 RALRLLNKFN 194 (844)
Q Consensus 185 ~Al~~Lng~~ 194 (844)
+|...|+...
T Consensus 301 KA~e~~~~e~ 310 (484)
T KOG1855|consen 301 KARELLNPEQ 310 (484)
T ss_pred HHHHhhchhh
Confidence 9999886543
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.017 Score=66.23 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=60.5
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhh-cCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~-~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 189 (844)
-.+.+|||||+||.-++..+|-.||. -||.|..+.|=+|+.-+-++|-|-|+|.+..+-.+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45689999999999999999999999 899999999999988889999999999999999999974
No 117
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.67 E-value=0.021 Score=63.61 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=67.1
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe-EEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLK 203 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr-~L~V~ 203 (844)
-+|+.+|+..|||..+++++|+.+|..-|......... ++.+.++++.+++.++|..|+-.+|.+.+++. .|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 45678999999999999999999999988765544322 34557999999999999999999999999954 89999
Q ss_pred eechh
Q 003151 204 VDQAT 208 (844)
Q Consensus 204 ~a~~~ 208 (844)
|.+.+
T Consensus 487 FSks~ 491 (492)
T KOG1190|consen 487 FSKST 491 (492)
T ss_pred eeccc
Confidence 98753
No 118
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.56 E-value=0.03 Score=61.38 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=62.9
Q ss_pred CCCcEEEecCCCC----CCCh-------HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE
Q 003151 126 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (844)
Q Consensus 126 ~~~~tLfVgNLp~----~vte-------~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~ 194 (844)
...+||.|.||=. ..+. ++|..-..+||.|.+|.|.- ..+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3467899998743 2221 35566688999999998843 3467999999999999999999999999
Q ss_pred eCCeEEEEEeechh
Q 003151 195 IDGQELMLKVDQAT 208 (844)
Q Consensus 195 I~Gr~L~V~~a~~~ 208 (844)
|+|+.|...+....
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998776654
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.51 E-value=0.044 Score=64.56 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=67.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
-..+|||-.||..++...+..+|...-.|.. |.|...+ +++..+-|||.|..+..+..|+..-+.+.++.+.|+|.-
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 4789999999999999999999998777766 6776665 899999999999999999999887788899999999964
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.50 E-value=0.054 Score=53.23 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=52.2
Q ss_pred CCCcEEEecCCCC------CCChH---HHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 126 KPQTKVYVGKIAP------TADSD---FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 126 ~~~~tLfVgNLp~------~vte~---~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
++.-||.|.-+.+ ...+. .|...|..||.|.-++++.+ .-+|+|.+-.+|.+|+. |+|..|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 3456777765551 23332 67788899999988877653 67999999999999999 6999999
Q ss_pred CeEEEEEee
Q 003151 197 GQELMLKVD 205 (844)
Q Consensus 197 Gr~L~V~~a 205 (844)
|+.|.|..-
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999999754
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.12 E-value=0.033 Score=61.76 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~---~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..|.|.||.+.++-+.++.||+..|.|-.+.|+... .-....-.|||.|.|..++..|-.+-|-+.|+--.|.+-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 489999999999999999999999999999887643 22334568999999999999888765655665555566666
Q ss_pred chhHHH
Q 003151 206 QATREY 211 (844)
Q Consensus 206 ~~~kk~ 211 (844)
+.+.-+
T Consensus 88 ~~~~p~ 93 (479)
T KOG4676|consen 88 DEVIPD 93 (479)
T ss_pred CCCCcc
Confidence 555433
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.08 E-value=0.045 Score=60.57 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=64.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCc-eeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~-I~s--~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
...+|-+.+||+..+.++|..||.-|-. |.. +.++.+ ..|.+.|=|||+|.+.+.|..|....|.....++.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3678999999999999999999998873 333 788887 689999999999999999999998777777678887774
No 123
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.01 E-value=0.066 Score=49.56 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=52.0
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecC-------CCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeE-
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE- 199 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~-------~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~- 199 (844)
.+.|.|-+.|+. .-..|...|++||.|.+..-+... ........-.|.|.++.+|.+||.. ||..|+|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456777788877 446777899999999877511110 0112336889999999999999996 999999864
Q ss_pred EEEEeechh
Q 003151 200 LMLKVDQAT 208 (844)
Q Consensus 200 L~V~~a~~~ 208 (844)
+-|.+.+..
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 557766543
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.71 E-value=0.072 Score=62.02 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=53.5
Q ss_pred HHHHhhhcCCceeEEEEeec-C--CCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 144 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 144 ~Lr~lF~~~G~I~s~ki~~d-~--~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
+++.-+++||.|.+|.+.+. . ...-..|.-||+|.+.+++++|+..|+|..+.|+.+...|-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45566788999999998876 2 3344678899999999999999999999999999998877654
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.68 E-value=0.012 Score=70.62 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=71.7
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
...|||.|+|+.+|.+.|+.+|..+|.+.+..+++. ..|+++|.+||.|.+..++.+++...++..+.-..+.|.+...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999999999999999999999999999888 4999999999999999999999988888888877777777555
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.83 Score=52.87 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=51.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCce-eEEEEeecC-CCCCCcc---EEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I-~s~ki~~d~-~tGk~kG---fgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
-.+.||||+||+.+++..|...|..||.+ +.|-.-... .---++| |.|+.|++..++..-|.... .+...+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccceE
Confidence 37899999999999999999999999976 444320110 0112445 99999999988876665432 2444444
Q ss_pred EEee
Q 003151 202 LKVD 205 (844)
Q Consensus 202 V~~a 205 (844)
+++.
T Consensus 335 f~vs 338 (520)
T KOG0129|consen 335 FKVS 338 (520)
T ss_pred EEEe
Confidence 4443
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.31 E-value=0.072 Score=64.66 Aligned_cols=84 Identities=12% Similarity=0.223 Sum_probs=70.8
Q ss_pred CCCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEE
Q 003151 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 201 (844)
Q Consensus 124 ~~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G--r~L~ 201 (844)
...+.+.+|||+|..++....|...|..||.|..|.+-. ..-|++|.|++...++.|+..|-|..|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678999999999999999999999999998876532 23599999999999999999999999994 7799
Q ss_pred EEeechhHHHHH
Q 003151 202 LKVDQATREYLE 213 (844)
Q Consensus 202 V~~a~~~kk~le 213 (844)
|.|+...-.+-.
T Consensus 525 vdla~~~~~~Pq 536 (975)
T KOG0112|consen 525 VDLASPPGATPQ 536 (975)
T ss_pred cccccCCCCChh
Confidence 999876644443
No 128
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.04 E-value=0.1 Score=42.57 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=41.1
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 187 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al 187 (844)
+.|-|.+.+....+.. ...|..||.|....+.. ...+.|+.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5678888887776544 45888999999988752 2358999999999999985
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.54 E-value=0.01 Score=71.36 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
..+++||.||+..+...+|...|..+|.+..+.+......|..+|+||+.|..+..+.+||....+..++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 3578999999999999999999999999888887766678999999999999999999999876666555333333
No 130
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.42 E-value=1.8 Score=47.04 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=48.5
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
.-|-|-+.|+.-. ..|..+|.+||.|+..... ....|-+|-|.+...|.+||.. ||..|+|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 3455556776544 4677899999999775432 3336999999999999999996 9999987654
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.31 E-value=0.11 Score=58.31 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=59.7
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCce-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-EeCCeEEEEEeec
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 206 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I-~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~-~I~Gr~L~V~~a~ 206 (844)
..+|+|||++.++..+|..+|...-.- ..-.++.. ||+||.+.+..-|.+|+..|+|. .+.|+.+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999854211 11223333 89999999999999999999985 7889999997766
Q ss_pred hhHHHH
Q 003151 207 ATREYL 212 (844)
Q Consensus 207 ~~kk~l 212 (844)
..+...
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 554333
No 132
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.29 E-value=0.2 Score=53.92 Aligned_cols=63 Identities=21% Similarity=0.112 Sum_probs=51.0
Q ss_pred HHHHhhhcCCceeEEEEeecCCCCCC-ccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 144 FVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 144 ~Lr~lF~~~G~I~s~ki~~d~~tGk~-kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+..-+.+||.|..|.|.-.+..... .---||+|+..++|.+|+--|||..|+|+.+...|-.
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56778889999999988776522222 2347999999999999999999999999998877653
No 133
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.84 E-value=0.094 Score=55.55 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=57.6
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (844)
...|||.||+..++.+.|..-|+.||.|....++.| ..|++.+=|+|.|.....+..|+..++
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 378999999999999999999999999988888777 689999999999999999999998773
No 134
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.80 E-value=0.36 Score=58.06 Aligned_cols=7 Identities=14% Similarity=-0.092 Sum_probs=3.0
Q ss_pred HHHHhhh
Q 003151 144 FVLSVLK 150 (844)
Q Consensus 144 ~Lr~lF~ 150 (844)
.+++.|.
T Consensus 405 ~~ee~Fk 411 (830)
T KOG1923|consen 405 RFEEQFK 411 (830)
T ss_pred HHHHHHH
Confidence 3444444
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.21 E-value=0.25 Score=54.96 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=60.0
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcC----CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~----G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
.-.|-+.+||++|++.++..||..- |.+..+-+++.+ +|+..|-|||.|...+.|..||.. |...|+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG------- 231 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIG------- 231 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHh-------
Confidence 3456778999999999999999732 244566666664 899999999999999999999975 443333
Q ss_pred eechhHHHHHHHHHhhh
Q 003151 204 VDQATREYLERYVDKKT 220 (844)
Q Consensus 204 ~a~~~kk~le~~k~kk~ 220 (844)
+.||+-|+..+.
T Consensus 232 -----qRYIElFRSTaa 243 (508)
T KOG1365|consen 232 -----QRYIELFRSTAA 243 (508)
T ss_pred -----HHHHHHHHHhHH
Confidence 457777776553
No 136
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=92.07 E-value=0.64 Score=47.21 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=57.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
....|.|.+||+..+..+|+..+...|.|....+.+| |+|.|+|...++..-||+.|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3678999999999999999999999999999999888 69999999999999999998876554
No 137
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.13 E-value=0.6 Score=51.84 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=63.1
Q ss_pred CcEEEec--CCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC--CeEEEEE
Q 003151 128 QTKVYVG--KIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLK 203 (844)
Q Consensus 128 ~~tLfVg--NLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~--Gr~L~V~ 203 (844)
...|.+. |--+.+|.+.|..|...+|+|..+.|++. +| --|.|+|++.+.|.+|...|||..|. =-.|+|.
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 4444444 44557899999999999999999988764 44 35899999999999999999999887 3568888
Q ss_pred eechhHHH
Q 003151 204 VDQATREY 211 (844)
Q Consensus 204 ~a~~~kk~ 211 (844)
++.+++-.
T Consensus 195 yAkP~rln 202 (494)
T KOG1456|consen 195 YAKPTRLN 202 (494)
T ss_pred ecCcceee
Confidence 88876443
No 138
>PTZ00121 MAEBL; Provisional
Probab=90.89 E-value=9.1 Score=49.57 Aligned_cols=11 Identities=9% Similarity=-0.085 Sum_probs=4.4
Q ss_pred CCHHHHHHHHH
Q 003151 178 ESAEGVLRALR 188 (844)
Q Consensus 178 ~~~e~A~~Al~ 188 (844)
.+......|+.
T Consensus 941 ~~~~~f~eC~e 951 (2084)
T PTZ00121 941 VGINKFGGCLE 951 (2084)
T ss_pred ccchhHHHHHH
Confidence 33334444443
No 139
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.76 E-value=2.6 Score=53.77 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.7
Q ss_pred CCCCchhhhcccccccccchh
Q 003151 742 IPKTKEELFSYEINWAVYDKH 762 (844)
Q Consensus 742 ip~~k~~lf~~~i~w~~~~~~ 762 (844)
|..-|..++.-.++=..|.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 444555565555555555443
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.30 E-value=0.069 Score=64.79 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=67.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
....|||+|||...+++..|+..|..+|.|..|.|-+- .-+....||||.|.+...+..|...+.|..|+.-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34789999999999999999999999999999887543 34566679999999999999999989998888666666555
Q ss_pred c
Q 003151 206 Q 206 (844)
Q Consensus 206 ~ 206 (844)
.
T Consensus 449 ~ 449 (975)
T KOG0112|consen 449 Q 449 (975)
T ss_pred c
Confidence 3
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.74 E-value=0.7 Score=56.13 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=61.4
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC--CeEEEEEee
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVD 205 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~--Gr~L~V~~a 205 (844)
..+.++-|.+-..+-..|..+|+.||.|.++...++- ..+.|.|...++|..|+.+|+|..+- |-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3455666667778888999999999999988776653 57999999999999999999998654 778888887
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 554
No 142
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.27 E-value=0.17 Score=55.74 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred CcEEEecCCCCCCChH-HHH--HhhhcCCceeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 128 QTKVYVGKIAPTADSD-FVL--SVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~-~Lr--~lF~~~G~I~s~ki~~d~~----tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
..-+||-+|+..+-+. .|. ..|+.||.|.++.+..++. .|.+ +-++|+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4568888999877665 333 6899999999998877652 2223 338999999999999999999999999996
Q ss_pred EEEeechhHHHHHHHHH
Q 003151 201 MLKVDQATREYLERYVD 217 (844)
Q Consensus 201 ~V~~a~~~kk~le~~k~ 217 (844)
+..+. +.+|-..|..
T Consensus 156 ka~~g--ttkycs~~l~ 170 (327)
T KOG2068|consen 156 KASLG--TTKYCSFYLR 170 (327)
T ss_pred HHhhC--CCcchhHHhh
Confidence 65443 3445544443
No 143
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.96 E-value=1.6 Score=39.10 Aligned_cols=55 Identities=7% Similarity=0.086 Sum_probs=41.1
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (844)
..||--..|..+...+|..+|+.||.| .|..+.+ .-|||...+.+.|..++..+.
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 345544599999999999999999987 4445555 479999999999999998875
No 144
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=87.72 E-value=0.27 Score=52.21 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=52.1
Q ss_pred HHHHhhh-cCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeechh
Q 003151 144 FVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (844)
Q Consensus 144 ~Lr~lF~-~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~~ 208 (844)
+|...|. +||.|..+.|..+ ..-...|=.||.|...++|.+|+..||+..+.|++|...+..-+
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3444445 9999999977665 34456788999999999999999999999999999998876543
No 145
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.38 E-value=2.1 Score=41.97 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=56.4
Q ss_pred CCCCcEEEecCCCCCCCh----HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 125 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte----~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
++|-.||.|.=|..++.. ..+...++.||+|.++.+.- + .-|.|.|.+..+|-.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----r--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----R--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----C--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 445678888876665543 25556778999999987632 2 4699999999999999999876 5667888
Q ss_pred EEEeech
Q 003151 201 MLKVDQA 207 (844)
Q Consensus 201 ~V~~a~~ 207 (844)
...|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8877543
No 146
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=86.89 E-value=4.4 Score=47.42 Aligned_cols=6 Identities=0% Similarity=-0.263 Sum_probs=2.7
Q ss_pred CCcEeC
Q 003151 191 NKFNID 196 (844)
Q Consensus 191 ng~~I~ 196 (844)
-|..|+
T Consensus 429 yGKVvG 434 (940)
T KOG4661|consen 429 YGKVVG 434 (940)
T ss_pred hcceec
Confidence 344444
No 147
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.64 E-value=14 Score=39.94 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=42.4
Q ss_pred CCcEEEecCCCCC------------CChHHHHHhhhcCCceeEEEEeec-C----CCCCCc-----cEEE---------E
Q 003151 127 PQTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRAQY-P----SNGTPK-----GFGF---------C 175 (844)
Q Consensus 127 ~~~tLfVgNLp~~------------vte~~Lr~lF~~~G~I~s~ki~~d-~----~tGk~k-----GfgF---------V 175 (844)
-+.|||+.+||-. .+++-|+..|..||.|..|.|+.. | .+|+.. |||| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 4567888887742 345689999999999999877542 2 455543 3433 3
Q ss_pred EeCCHHHHHHHHHHhCCc
Q 003151 176 EFESAEGVLRALRLLNKF 193 (844)
Q Consensus 176 eF~~~e~A~~Al~~Lng~ 193 (844)
.|........|+..|.|.
T Consensus 228 qfmeykgfa~amdalr~~ 245 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGM 245 (445)
T ss_pred HHHHHHhHHHHHHHHhcc
Confidence 444444555555555554
No 148
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.73 E-value=2.8 Score=35.53 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=44.9
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcC---CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~---G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 190 (844)
+..|+|.++. .++..+|+.+|..| .....+.++-|. -|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999986 67788999999988 235677787773 6889999999999999765
No 149
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.14 E-value=2 Score=44.32 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=45.9
Q ss_pred HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEEEEeechh
Q 003151 143 DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQAT 208 (844)
Q Consensus 143 ~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~I~Gr~L~V~~a~~~ 208 (844)
..|+.+|..|+.+..|..... .+-..|.|.+.+.|..|...|+ +..|+|..|+|.|+..+
T Consensus 10 ~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 10 AELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 689999999999999877654 2568899999999999999999 99999999999988544
No 150
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.58 E-value=7.1 Score=45.82 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=55.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhh--cCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--cEeCCeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~--~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng--~~I~Gr~L~V 202 (844)
..|.|++.-||..+..+.++.||. .|-++++|.+..+- -=||+|++..+|..|...|.. ..|-|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 356788999999999999999998 58999999987762 369999999999999877632 3566666543
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.36 E-value=1.9 Score=50.45 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=56.7
Q ss_pred cEEEecCCCCCCChHHHHHhhh-cCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE---eCC-eEEEEE
Q 003151 129 TKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN---IDG-QELMLK 203 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~-~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~---I~G-r~L~V~ 203 (844)
+|+-|.|++...|-..|..... ..|.--.+.++.|-.+-...|||||.|.++..+..+.+++||+. |++ +.+.+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3344444444433333322222 34555666777776667788999999999999999999999984 443 444666
Q ss_pred eec--hhHHHHHHHHH
Q 003151 204 VDQ--ATREYLERYVD 217 (844)
Q Consensus 204 ~a~--~~kk~le~~k~ 217 (844)
||. .+..+++.|+.
T Consensus 469 YArIQGk~~Li~hFqn 484 (549)
T KOG4660|consen 469 YARIQGKEALIEHFQN 484 (549)
T ss_pred hhhhhchHHHHHHhhc
Confidence 664 33445666654
No 152
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.50 E-value=2.2 Score=43.67 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=51.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhc-CCceeEEEEee---cCCCC--CCccEEEEEeCCHHHHHHHHHHhCCcEeCC---
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNIDG--- 197 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~-~G~I~s~ki~~---d~~tG--k~kGfgFVeF~~~e~A~~Al~~Lng~~I~G--- 197 (844)
....|.|.+||+++|++.+...++. +|....|..+. ...+. ....-|||.|.+.+.+..-+..++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4578999999999999999998887 77664454333 11111 123569999999999999999999977652
Q ss_pred --eEEEEEeech
Q 003151 198 --QELMLKVDQA 207 (844)
Q Consensus 198 --r~L~V~~a~~ 207 (844)
....|.+|..
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3346677766
No 153
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=79.23 E-value=2.7 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003151 800 KASQMLELLQTILDDEAEMFVLKM 823 (844)
Q Consensus 800 ~~~~l~~~l~~~ld~~a~~fv~~l 823 (844)
+-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 154
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=77.42 E-value=1.3 Score=50.80 Aligned_cols=75 Identities=7% Similarity=0.001 Sum_probs=60.8
Q ss_pred CCcEEEecCCCCCCCh-HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte-~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..+.|-+.-+++..+. .+|...|..||.|..|.+-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 3556666667777655 599999999999999987443 2468999999999988887 4999999999999997
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 664
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=76.43 E-value=18 Score=34.14 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=48.5
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
...+.+...|+.++.++|..+.+.+- .|..++|+++. .-.+-.+.+.|.+...|..-...+||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33444455555666667776666664 56677888762 236677899999999999999999999765
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=75.72 E-value=2.1 Score=47.16 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=67.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..+++|||++.+.+.+.++..+|..+|.+..+.+........++||+++.|...+.+..||.....+.+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46899999999999999999999999988887776655688999999999999999999998644457767776665554
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 44
No 157
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.59 E-value=15 Score=31.95 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=37.6
Q ss_pred EEEec-CCCCCCChHHHHHhhhcCCc-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 130 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 130 tLfVg-NLp~~vte~~Lr~lF~~~G~-----I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
++||. +=-..++..+|..+|...+. |-.+.|.. .|.||+-... .+..++..|++..+.|+.|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 12236777788888876643 44566643 3899988764 7888999999999999999997
Q ss_pred ee
Q 003151 204 VD 205 (844)
Q Consensus 204 ~a 205 (844)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 158
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=71.32 E-value=21 Score=32.95 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=55.1
Q ss_pred HhhhhhhhHHHHHHhhhCCchhH--HHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 003151 764 LHERMRPWISKKITEFLGEEETT--LVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 837 (844)
Q Consensus 764 ~~~~~~pwi~kki~e~lG~~e~~--lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~lwr~life~~~~~~g 837 (844)
+.+.||-.|.+|...+=.+-|++ +-+||+=++....++..++.+|...+|.=...++...-.-..|..++..-|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 45678889999998885555544 889999999999999999999999999776677767777777777776665
No 159
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=69.56 E-value=8.8 Score=44.49 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=16.8
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhc
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKV 151 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~ 151 (844)
..++.++|-.-=+-.++...|..+|..
T Consensus 303 ~r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 303 SRPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccccchhhhccCcceecHHHHHHHHHH
Confidence 344556665444445666789999964
No 160
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.08 E-value=16 Score=43.25 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=58.0
Q ss_pred CCCCcEEEecCCCCC-CChHHHHHhhhcC----CceeEEEEeecC----------CCCC---------------------
Q 003151 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 168 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~Lr~lF~~~----G~I~s~ki~~d~----------~tGk--------------------- 168 (844)
..+.++|-|.|+.|. +...+|.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445789999999994 5666898888876 689999765321 1222
Q ss_pred ----------------CccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 169 ----------------PKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 169 ----------------~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
..-||.|+|.+...|......++|+.+...-..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 2347889999999999999999999988444333
No 161
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=68.47 E-value=3.9 Score=51.31 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=23.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK 159 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~k 159 (844)
...+++|-.+-..+..+.|+.+.+.||...++.
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~ 103 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVL 103 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhh
Confidence 356677777777777788888888877665543
No 162
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=64.79 E-value=66 Score=37.79 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=12.7
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEE
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSW 158 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ 158 (844)
.|-...|+..-.-..|..-...-|.+..+
T Consensus 483 ~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 483 KVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred ceeeccCcCcccHHHHHHHHHhccccccc
Confidence 44455555333334444333333444443
No 163
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=61.55 E-value=22 Score=41.90 Aligned_cols=13 Identities=31% Similarity=0.179 Sum_probs=7.3
Q ss_pred EEeCCHHHHHHHH
Q 003151 175 CEFESAEGVLRAL 187 (844)
Q Consensus 175 VeF~~~e~A~~Al 187 (844)
++..+..+|..||
T Consensus 325 ~ec~sW~~avaaL 337 (582)
T PF03276_consen 325 NECGSWASAVAAL 337 (582)
T ss_pred cccccHHHHHHHH
Confidence 3444556666665
No 164
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=61.44 E-value=23 Score=38.08 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=45.1
Q ss_pred EEEecCCCCCCChHH---HHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q 003151 130 KVYVGKIAPTADSDF---VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (844)
Q Consensus 130 tLfVgNLp~~vte~~---Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~ 199 (844)
..|++|+-..+...- +...|+-|-.+...+++.+ .-+...+++|+.|........+-..-++..|+-..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~ 169 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPP 169 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcc
Confidence 344555444444332 2566777777777788887 47888999999998776666665554555555554
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.65 E-value=26 Score=40.46 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=57.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
+++.|+|-.+|..++-.+|..|+..|- .|..+++++|. --.+-...|.|.+..+|..-...+||..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378999999999999999999998765 68899999963 123345789999999999999999999776
No 166
>PHA03378 EBNA-3B; Provisional
Probab=58.17 E-value=84 Score=38.25 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=4.9
Q ss_pred ChHHHHHhh
Q 003151 141 DSDFVLSVL 149 (844)
Q Consensus 141 te~~Lr~lF 149 (844)
+..-|+.|+
T Consensus 821 ~k~ilrqll 829 (991)
T PHA03378 821 TKQILRQLL 829 (991)
T ss_pred HHHHHHHHh
Confidence 344566665
No 167
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=57.88 E-value=2.2e+02 Score=34.76 Aligned_cols=7 Identities=29% Similarity=-0.178 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003151 181 EGVLRAL 187 (844)
Q Consensus 181 e~A~~Al 187 (844)
..++.|+
T Consensus 83 ~~~L~ae 89 (811)
T KOG4364|consen 83 MVALLAE 89 (811)
T ss_pred ccchhhh
Confidence 3344443
No 168
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=54.89 E-value=48 Score=40.97 Aligned_cols=12 Identities=8% Similarity=-0.180 Sum_probs=6.2
Q ss_pred cccccccccCCC
Q 003151 8 KVGRLQILHKRT 19 (844)
Q Consensus 8 ~~~~~~~l~~~~ 19 (844)
.+.++|-++-+.
T Consensus 546 ~~~~~P~~ap~s 557 (756)
T KOG2375|consen 546 PSIFLPRVAPAS 557 (756)
T ss_pred CCCCCCCcCccc
Confidence 455556555333
No 169
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=53.97 E-value=45 Score=28.69 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=42.1
Q ss_pred CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 139 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 139 ~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
.++-.+|+..|.+|+- ..|..| .| || ||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-RT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-CC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4667899999999973 123333 23 33 89999999999999999999988777654
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.48 E-value=90 Score=39.95 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=6.0
Q ss_pred HHHHHhhhcCC
Q 003151 143 DFVLSVLKVCG 153 (844)
Q Consensus 143 ~~Lr~lF~~~G 153 (844)
..++.+...|+
T Consensus 953 ~~~e~~~~r~~ 963 (1049)
T KOG0307|consen 953 TFLEELLQRCS 963 (1049)
T ss_pred HHHHHHHHHhh
Confidence 35555555665
No 171
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.06 E-value=1.1e+02 Score=38.34 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=5.4
Q ss_pred hHHHHHHHHh
Q 003151 785 TTLVDYIVSS 794 (844)
Q Consensus 785 ~~lv~~i~~~ 794 (844)
..-|||+|..
T Consensus 989 ~sY~dyL~~~ 998 (1007)
T KOG1984|consen 989 SSYVDYLCEL 998 (1007)
T ss_pred cccchHHHHH
Confidence 3456666653
No 172
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=52.92 E-value=16 Score=44.03 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=52.3
Q ss_pred hhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003151 765 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 828 (844)
Q Consensus 765 ~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~lwr~li 828 (844)
..+++--+.....+|+|-.-+.++..|+..|........=+.+|..||.++.+.||..||-.|-
T Consensus 21 ~~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 21 VAKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3578888999999999998777777777777655555455559999999999999999999887
No 173
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.47 E-value=64 Score=40.34 Aligned_cols=11 Identities=9% Similarity=0.307 Sum_probs=5.1
Q ss_pred CeEEEEEeech
Q 003151 197 GQELMLKVDQA 207 (844)
Q Consensus 197 Gr~L~V~~a~~ 207 (844)
|++...+++..
T Consensus 358 gr~f~Cn~C~~ 368 (1007)
T KOG1984|consen 358 GRKFICNFCGS 368 (1007)
T ss_pred CceEEecCCCc
Confidence 44444444433
No 174
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=50.93 E-value=11 Score=41.63 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=11.2
Q ss_pred EEEEEeechhHHHHHHHHH
Q 003151 199 ELMLKVDQATREYLERYVD 217 (844)
Q Consensus 199 ~L~V~~a~~~kk~le~~k~ 217 (844)
.+.|.+-++...++..|..
T Consensus 162 FmYiRYtqpp~dLw~WyEp 180 (453)
T KOG2888|consen 162 FMYIRYTQPPADLWDWYEP 180 (453)
T ss_pred eeEEeecCChhHHHHHhhh
Confidence 3456666666666665543
No 175
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=50.75 E-value=6 Score=34.12 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHH
Q 003151 799 VKASQMLELLQTILDDEAEMFVLK 822 (844)
Q Consensus 799 ~~~~~l~~~l~~~ld~~a~~fv~~ 822 (844)
.+-..||++|..||+.+|+.||..
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~ 62 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRS 62 (69)
T ss_dssp CCHHHHHHHHTTTSSSC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999975
No 176
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=46.81 E-value=5.9 Score=47.70 Aligned_cols=10 Identities=0% Similarity=0.042 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 003151 207 ATREYLERYV 216 (844)
Q Consensus 207 ~~kk~le~~k 216 (844)
.+.+.|..|.
T Consensus 543 RV~kVirvWe 552 (877)
T KOG0151|consen 543 RVMKVIRVWE 552 (877)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 177
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.54 E-value=15 Score=37.48 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=55.1
Q ss_pred CCcEEEecCCCCCCChH-----HHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe-EE
Q 003151 127 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~-----~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr-~L 200 (844)
-.+++++++|+..+-.+ ....+|..|-......+++. .++--|.|.++..|..|.-.+++..|.|+ .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 45678899988865433 44566666655544444432 35666899999999999999999999998 78
Q ss_pred EEEeechh
Q 003151 201 MLKVDQAT 208 (844)
Q Consensus 201 ~V~~a~~~ 208 (844)
..-+++..
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 87777654
No 178
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=44.34 E-value=4e+02 Score=28.01 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 003151 501 IAVAKRRAEEE 511 (844)
Q Consensus 501 ~~e~~rr~~e~ 511 (844)
.++.+++.+++
T Consensus 162 keeekr~~eE~ 172 (216)
T PF11600_consen 162 KEEEKRKKEEE 172 (216)
T ss_pred HHHHHHhhHHH
Confidence 34444554444
No 179
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=43.48 E-value=1.1e+02 Score=33.42 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCce-eEEEEeecCCCCCCccEEEEEeCCHHH
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEG 182 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I-~s~ki~~d~~tGk~kGfgFVeF~~~e~ 182 (844)
-.+-|||+|||..+.-.+|+..+...|.+ .++.+- .+.|-||..|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccC
Confidence 35669999999999999999999887743 333331 234679999987643
No 180
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=41.10 E-value=12 Score=45.74 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=5.1
Q ss_pred CCccccccc
Q 003151 1 MNEYTVRKV 9 (844)
Q Consensus 1 ~~~~~~~~~ 9 (844)
|.||+-.|-
T Consensus 1 m~QfGgqk~ 9 (1194)
T KOG4246|consen 1 MQQFGGQKG 9 (1194)
T ss_pred CcccCCCCC
Confidence 556665553
No 181
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=40.39 E-value=1.8e+02 Score=36.03 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=4.5
Q ss_pred cCCceeEE
Q 003151 151 VCGTVKSW 158 (844)
Q Consensus 151 ~~G~I~s~ 158 (844)
+-|.|..+
T Consensus 1071 ~~~diIei 1078 (1106)
T KOG0162|consen 1071 KKGDIIEI 1078 (1106)
T ss_pred cCCCEEEE
Confidence 45666554
No 182
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=38.61 E-value=60 Score=28.93 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHhhhCCchhHHHHHHHHhhhccC---CHHHHHHHHHHhhhHHHHHHHH
Q 003151 773 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVL 821 (844)
Q Consensus 773 ~kki~e~lG~~e~~lv~~i~~~l~~~~---~~~~l~~~l~~~ld~~a~~fv~ 821 (844)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=..
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Ll 59 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLL 59 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHH
Confidence 578999999 68999999999997543 6778999999999988765433
No 183
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.97 E-value=3.9e+02 Score=30.86 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=44.3
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCc-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~-I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 189 (844)
...|-|.++|...-.++|..+|+.||. --.|+++-+ ..+|..|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 567778888888888889999999974 345666666 3799999999999999874
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=37.38 E-value=36 Score=39.55 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHhhhCCchhHHHHHHHHhhhccC----CHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003151 767 RMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRML 827 (844)
Q Consensus 767 ~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~----~~~~l~~~l~~~ld~~a~~fv~~lwr~l 827 (844)
.|+-|...-..=+---.-..|-.||+-.|+..+ -+..+++.|..||.+++..||.||+..|
T Consensus 8 ~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~ 72 (526)
T KOG2135|consen 8 ALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDAL 72 (526)
T ss_pred HHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhh
Confidence 456666554333322233458899999998654 3566789999999999999999998655
No 185
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=35.70 E-value=9.7 Score=40.00 Aligned_cols=76 Identities=16% Similarity=0.341 Sum_probs=62.9
Q ss_pred CCCcEEEecC----CCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 126 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 126 ~~~~tLfVgN----Lp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
....+++.|| |...++.+.+...|+..|.+..+++.++. +|..+.|+|+.|.-....-.++....++.+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3467888888 78889999999999999999999998884 699999999999988888888887777665544444
Q ss_pred E
Q 003151 202 L 202 (844)
Q Consensus 202 V 202 (844)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 3
No 186
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=34.87 E-value=45 Score=37.07 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=6.4
Q ss_pred HHHHhhhcCCceeEE
Q 003151 144 FVLSVLKVCGTVKSW 158 (844)
Q Consensus 144 ~Lr~lF~~~G~I~s~ 158 (844)
.|.+||.+.-.|.-|
T Consensus 85 videIyyqVkHvEPW 99 (453)
T KOG2888|consen 85 VIDEIYYQVKHVEPW 99 (453)
T ss_pred HHHHHHHHHhccCch
Confidence 444444444333333
No 187
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.40 E-value=3.8e+02 Score=29.43 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=3.2
Q ss_pred EEeCCHH
Q 003151 175 CEFESAE 181 (844)
Q Consensus 175 VeF~~~e 181 (844)
+.|++..
T Consensus 314 l~yedVs 320 (338)
T KOG0917|consen 314 LQYEDVS 320 (338)
T ss_pred cchHHHH
Confidence 4455443
No 188
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.67 E-value=47 Score=36.02 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=43.3
Q ss_pred hHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 003151 771 WISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 827 (844)
Q Consensus 771 wi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~-ld~~--a~~fv~~lwr~l 827 (844)
-|+....-|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 263 kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 263 KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 56677778899999999999988888888888877766655 4422 456888999654
No 189
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=33.38 E-value=3e+02 Score=34.32 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=9.7
Q ss_pred cccccccccccccCCCCCCC
Q 003151 4 YTVRKVGRLQILHKRTTSTT 23 (844)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~ 23 (844)
|...-++..++....|+...
T Consensus 624 fG~~~~~~m~i~~~~P~~~~ 643 (759)
T PF05518_consen 624 FGRADVPEMPISTVPPSFGT 643 (759)
T ss_pred cCCCCccccccccCCCcccc
Confidence 34444555555555554444
No 190
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=32.11 E-value=41 Score=43.00 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003151 63 CGLPRYPAPYPSMVRPA 79 (844)
Q Consensus 63 Pg~p~~p~P~~~~~~P~ 79 (844)
||.||.|||.++.-+|+
T Consensus 6 pg~ppppppppg~epps 22 (2365)
T COG5178 6 PGNPPPPPPPPGFEPPS 22 (2365)
T ss_pred CCCCcccccCCCCCCCC
Confidence 44444444444444444
No 191
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.01 E-value=68 Score=29.10 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=35.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCC
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 179 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~ 179 (844)
...-|||||++..+.+.-...+...++.- ++.++.. ..+ ..||+|.++.+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~-~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWS-DNN-EQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEc-cCC-CCCEEEEEeCC
Confidence 35579999999999988777777765543 3334343 233 88999998854
No 192
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.64 E-value=3e+02 Score=34.60 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=5.2
Q ss_pred EEEEeCCH
Q 003151 173 GFCEFESA 180 (844)
Q Consensus 173 gFVeF~~~ 180 (844)
-||+|.+.
T Consensus 230 PFV~fid~ 237 (887)
T KOG1985|consen 230 PFVEFIDQ 237 (887)
T ss_pred CeEEecCC
Confidence 46777665
No 193
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.76 E-value=9.2 Score=44.96 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=56.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr 198 (844)
.|+|||.||+++++-..|..++..+-.+..+.+..+-..-...-+++|+|.--....-|+-+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 57899999999999999999999887777776644433344566899999988888888888888765543
No 194
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=29.91 E-value=1.2e+02 Score=27.42 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.6
Q ss_pred HhhhhhhhHHHHHHhh--hCC---chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHH
Q 003151 764 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 821 (844)
Q Consensus 764 ~~~~~~pwi~kki~e~--lG~---~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~ 821 (844)
..+.|+|||..|+.|+ ||. ..+.|=+|+++..-++..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3567899999999986 564 578899999999988888888888888888877777764
No 195
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=29.15 E-value=3.8 Score=46.46 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=61.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~-~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..+.+-|.|||+....+.|..|+..||.|..|..+ +++ -...--|+|...+.+..||..|+|..+....+.|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~----etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS----ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch----HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 46779999999999999999999999999988653 222 2234457899999999999999999999988888653
No 196
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=29.12 E-value=8e+02 Score=26.95 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=13.8
Q ss_pred cEEEEEeCCHHH----HHHHHHHhCCcEe
Q 003151 171 GFGFCEFESAEG----VLRALRLLNKFNI 195 (844)
Q Consensus 171 GfgFVeF~~~e~----A~~Al~~Lng~~I 195 (844)
..-||.|+.... ....+..|+|+.|
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsi 104 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSI 104 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCee
Confidence 366777765433 3344556666543
No 197
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.39 E-value=2.1e+02 Score=34.89 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=7.2
Q ss_pred cEeCCeEEEEEee
Q 003151 193 FNIDGQELMLKVD 205 (844)
Q Consensus 193 ~~I~Gr~L~V~~a 205 (844)
+.+.|..|.+.+.
T Consensus 496 ~~~~~~~l~l~~~ 508 (585)
T PRK14950 496 VSVEKNTLTLSFK 508 (585)
T ss_pred eeecCCEEEEecC
Confidence 4555666666554
No 198
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.26 E-value=99 Score=33.09 Aligned_cols=34 Identities=6% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 158 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ 158 (844)
.....++|+-|||..+++..|..+.+.||.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3457899999999999999999999999976554
No 199
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.06 E-value=72 Score=29.57 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=34.9
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCH
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 180 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~ 180 (844)
..-||||+++..+.+.--..+-..||. -++.++.. +....||+|.++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCCC
Confidence 557999999999988866666666654 33444442 334559999998864
No 200
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=26.66 E-value=24 Score=34.92 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=14.2
Q ss_pred CccccCCcCCCCCCcccc
Q 003151 603 KRTAVPSVFHVEDDDDAD 620 (844)
Q Consensus 603 kr~~v~~vf~~~dde~~~ 620 (844)
+..+|+.|||.+||+|..
T Consensus 88 ~~~~va~~Fn~d~d~e~e 105 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPE 105 (150)
T ss_pred CcchhhhhhccccccChh
Confidence 467899999998777644
No 201
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.40 E-value=84 Score=32.18 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~ 189 (844)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 44578999999999999999999999999997777665543333455555555554444444443
No 202
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.23 E-value=1.8e+02 Score=24.92 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.6
Q ss_pred hhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 003151 770 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 825 (844)
Q Consensus 770 pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~-l~~~ld~~a~~fv~~lwr 825 (844)
+++..-+.-++....+.+..++-..+....++..++.+ |.++|.+ |-.+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56777777778888888999999999887899999988 8888886 556665
No 203
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.77 E-value=3.7e+02 Score=33.88 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=10.3
Q ss_pred HHHHHHHhCCcEe--C-CeEEEEEee
Q 003151 183 VLRALRLLNKFNI--D-GQELMLKVD 205 (844)
Q Consensus 183 A~~Al~~Lng~~I--~-Gr~L~V~~a 205 (844)
|..|-..+|-+.. + |++.+.+++
T Consensus 221 Cr~CRtYiNPFV~fid~gr~WrCNlC 246 (887)
T KOG1985|consen 221 CRRCRTYINPFVEFIDQGRRWRCNLC 246 (887)
T ss_pred ehhhhhhcCCeEEecCCCceeeechh
Confidence 4444445555431 1 455555443
No 204
>PF15208 Rab15_effector: Rab15 effector
Probab=24.40 E-value=67 Score=33.61 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=25.7
Q ss_pred ccccchhhHhhhhhhhHHHHHHhhhCCchhH--------------HHHHHHHhhh
Q 003151 756 WAVYDKHELHERMRPWISKKITEFLGEEETT--------------LVDYIVSSTQ 796 (844)
Q Consensus 756 w~~~~~~~~~~~~~pwi~kki~e~lG~~e~~--------------lv~~i~~~l~ 796 (844)
+++|...++ ..+.|..||||++|+. ||.||--.+.
T Consensus 21 cev~S~avv------hAsqklkEYLgFedP~skl~p~~~TLnEIFLi~fItfc~e 69 (236)
T PF15208_consen 21 CEVVSQAVV------HASQKLKEYLGFEDPLSKLCPAPNTLNEIFLIHFITFCQE 69 (236)
T ss_pred HHHHHHHHH------HHHHHHHHHhCccCcHHhcCCCchhHHHHHHHHHHHHHHh
Confidence 667766666 4578899999999984 6666665554
No 205
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=24.38 E-value=2.5e+02 Score=25.75 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 003151 803 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 840 (844)
Q Consensus 803 ~l~~~l~~~ld~~--a~~fv~~lwr~life~~~~~~g~~~ 840 (844)
+++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443332 4679999999999999998876654
No 206
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=23.56 E-value=1.8e+02 Score=34.31 Aligned_cols=9 Identities=44% Similarity=0.538 Sum_probs=3.8
Q ss_pred cCCCChHHH
Q 003151 630 PIDYSTEEL 638 (844)
Q Consensus 630 pl~y~~e~~ 638 (844)
|-|-.||-+
T Consensus 753 ~~d~~DEIm 761 (817)
T KOG1925|consen 753 PSDTSDEIM 761 (817)
T ss_pred CCChHHHHH
Confidence 334444444
No 207
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=23.41 E-value=2.4e+02 Score=25.14 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=44.3
Q ss_pred hhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003151 769 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 828 (844)
Q Consensus 769 ~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~lwr~li 828 (844)
.+=+..++..+|-..|-.-+-+.++....+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 455677888899666655555556666667799999999999999999865555555555
No 208
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=21.28 E-value=1.9e+02 Score=31.69 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhh-------HHHHHHHHHHHHHHH
Q 003151 802 SQMLELLQTILD-------DEAEMFVLKMWRMLI 828 (844)
Q Consensus 802 ~~l~~~l~~~ld-------~~a~~fv~~lwr~li 828 (844)
-+|.++|+..|. -++..||.+|||.|+
T Consensus 190 ~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL 223 (282)
T PF08926_consen 190 YELSENLEKLLQEAHERSESEEVAFVTQLVRKLL 223 (282)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHH
Confidence 478888888887 345779999999887
No 209
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.54 E-value=2.2e+02 Score=25.23 Aligned_cols=63 Identities=19% Similarity=0.444 Sum_probs=43.2
Q ss_pred hhhHhhhhhhhHHHHHHhhhCC-chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHH
Q 003151 761 KHELHERMRPWISKKITEFLGE-EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMW 824 (844)
Q Consensus 761 ~~~~~~~~~pwi~kki~e~lG~-~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~lw 824 (844)
...|..+|+-|....--+=||. +-..|+|||++.|..|---+.|.+. ..+|.+-.+.+-..||
T Consensus 8 k~~li~~iq~yf~~E~d~eiG~~~Ae~LLDF~~~elGp~~YNqgv~DA-~~~~~~r~~~l~~~ly 71 (76)
T PF09932_consen 8 KAELIDKIQRYFAEELDEEIGDFEAEFLLDFFIEELGPHFYNQGVQDA-QAVLEERMEDLEEELY 71 (76)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHhHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhHHHHHH
Confidence 4567788899988888888886 4556899999999887755554433 3444444555555555
Done!