Query 003151
Match_columns 844
No_of_seqs 516 out of 2940
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 9.3E-38 3.2E-42 288.6 10.3 106 734-839 13-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 3.2E-22 1.1E-26 183.5 8.3 92 744-840 5-98 (111)
3 3pgw_S U1-70K; protein-RNA com 99.8 5.1E-19 1.7E-23 201.4 15.3 83 125-207 99-181 (437)
4 1x4q_A U4/U6 small nuclear rib 99.8 2.6E-19 9E-24 159.9 7.6 68 764-831 14-81 (92)
5 4fxv_A ELAV-like protein 1; RN 99.7 1.5E-17 5.1E-22 151.2 10.9 81 127-207 18-98 (99)
6 3s8s_A Histone-lysine N-methyl 99.7 1E-16 3.5E-21 148.5 12.9 84 127-210 5-88 (110)
7 3n9u_C Cleavage and polyadenyl 99.7 1.4E-16 4.7E-21 156.8 12.5 82 127-208 54-137 (156)
8 2khc_A Testis-specific RNP-typ 99.7 4.1E-16 1.4E-20 145.1 14.7 81 125-205 37-117 (118)
9 3ns6_A Eukaryotic translation 99.7 1.1E-16 3.7E-21 145.4 7.2 86 127-212 5-97 (100)
10 2lxi_A RNA-binding protein 10; 99.6 3.2E-17 1.1E-21 146.5 3.1 81 128-208 1-83 (91)
11 2lkz_A RNA-binding protein 5; 99.6 2.3E-16 7.8E-21 142.6 7.7 81 127-207 8-94 (95)
12 3bs9_A Nucleolysin TIA-1 isofo 99.6 7.6E-16 2.6E-20 135.1 10.9 81 127-207 5-85 (87)
13 2e5h_A Zinc finger CCHC-type a 99.6 1.4E-15 5E-20 135.4 12.8 80 127-206 15-94 (94)
14 2cq4_A RNA binding motif prote 99.6 6.7E-16 2.3E-20 142.9 10.5 82 126-208 23-104 (114)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.6 8.1E-16 2.8E-20 134.3 10.4 81 126-206 5-85 (85)
16 2la6_A RNA-binding protein FUS 99.6 8E-16 2.7E-20 138.8 10.6 80 127-206 12-99 (99)
17 3md1_A Nuclear and cytoplasmic 99.6 1E-15 3.4E-20 133.1 10.9 81 128-208 1-81 (83)
18 2x1f_A MRNA 3'-END-processing 99.6 9.5E-16 3.3E-20 137.5 10.8 84 127-210 1-84 (96)
19 2cpz_A CUG triplet repeat RNA- 99.6 1.6E-15 5.4E-20 140.7 12.6 82 126-207 23-104 (115)
20 2cqc_A Arginine/serine-rich sp 99.6 1.7E-15 5.7E-20 135.1 11.8 82 126-207 13-94 (95)
21 1x5u_A Splicing factor 3B subu 99.6 1.5E-15 5E-20 138.3 10.9 83 126-208 13-95 (105)
22 2dgs_A DAZ-associated protein 99.6 1.7E-15 5.8E-20 136.5 10.9 81 126-207 8-88 (99)
23 2dnz_A Probable RNA-binding pr 99.6 1.4E-15 4.8E-20 135.7 10.3 81 127-207 4-84 (95)
24 2cq0_A Eukaryotic translation 99.6 2.4E-15 8.1E-20 136.6 11.8 82 126-207 13-94 (103)
25 1whw_A Hypothetical protein ri 99.6 2.2E-15 7.7E-20 135.6 11.5 83 126-208 6-88 (99)
26 1u6f_A Tcubp1, RNA-binding pro 99.6 4.4E-15 1.5E-19 142.1 14.1 83 125-207 39-121 (139)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.6E-15 5.3E-20 137.4 10.2 83 126-208 10-92 (102)
28 1oo0_B CG8781-PA, drosophila Y 99.6 1.9E-15 6.6E-20 138.8 10.9 82 126-207 24-105 (110)
29 2jrs_A RNA-binding protein 39; 99.6 1.5E-15 5.2E-20 139.9 10.2 83 125-207 23-105 (108)
30 3p5t_L Cleavage and polyadenyl 99.6 3.7E-16 1.3E-20 138.8 5.6 80 129-208 2-83 (90)
31 2dnm_A SRP46 splicing factor; 99.6 1.3E-15 4.4E-20 138.3 9.3 82 126-207 11-92 (103)
32 1p27_B RNA-binding protein 8A; 99.6 1.6E-15 5.6E-20 138.2 9.8 81 127-207 22-102 (106)
33 2dgo_A Cytotoxic granule-assoc 99.6 3.5E-15 1.2E-19 138.2 12.2 82 126-207 13-94 (115)
34 1x5t_A Splicing factor 3B subu 99.6 1.4E-15 4.8E-20 136.1 9.2 81 127-207 4-85 (96)
35 4f25_A Polyadenylate-binding p 99.6 1.7E-15 5.7E-20 141.0 9.9 78 128-207 5-82 (115)
36 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7E-16 2.4E-20 139.8 7.0 80 127-208 18-98 (100)
37 3ulh_A THO complex subunit 4; 99.6 3.2E-15 1.1E-19 136.5 11.5 80 126-206 27-106 (107)
38 2do4_A Squamous cell carcinoma 99.6 5.1E-15 1.7E-19 133.6 12.2 82 126-208 15-96 (100)
39 1x4h_A RNA-binding protein 28; 99.6 3.4E-15 1.1E-19 137.1 11.1 82 126-207 13-100 (111)
40 2ywk_A Putative RNA-binding pr 99.6 2.5E-15 8.4E-20 134.2 9.9 80 126-206 14-93 (95)
41 2dgp_A Bruno-like 4, RNA bindi 99.6 2.1E-15 7.3E-20 137.5 9.3 82 126-207 11-95 (106)
42 1x5s_A Cold-inducible RNA-bind 99.6 2.5E-15 8.5E-20 136.1 9.7 82 127-208 11-92 (102)
43 2cph_A RNA binding motif prote 99.6 3.5E-15 1.2E-19 136.1 10.7 83 125-207 12-96 (107)
44 3s7r_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 130.6 10.8 79 126-205 9-87 (87)
45 2div_A TRNA selenocysteine ass 99.6 2.7E-15 9.1E-20 135.1 9.4 82 126-207 7-93 (99)
46 2cpe_A RNA-binding protein EWS 99.6 4E-15 1.4E-19 137.3 10.7 83 125-207 12-102 (113)
47 2cpf_A RNA binding motif prote 99.6 2.5E-15 8.4E-20 135.1 9.0 82 126-207 3-87 (98)
48 2dnh_A Bruno-like 5, RNA bindi 99.6 4.8E-15 1.6E-19 134.9 10.9 82 126-208 13-97 (105)
49 2dng_A Eukaryotic translation 99.6 5.5E-15 1.9E-19 134.3 11.1 80 126-207 13-92 (103)
50 4a8x_A RNA-binding protein wit 99.6 3.5E-15 1.2E-19 131.0 9.3 81 127-207 3-84 (88)
51 2nlw_A Eukaryotic translation 99.6 1.6E-15 5.5E-20 138.7 7.2 83 126-210 13-102 (105)
52 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.1E-14 3.8E-19 132.1 12.7 81 125-207 12-92 (103)
53 2rs2_A Musashi-1, RNA-binding 99.6 4.6E-15 1.6E-19 136.8 10.2 82 125-207 22-103 (109)
54 3ex7_B RNA-binding protein 8A; 99.6 3.7E-15 1.3E-19 140.3 9.6 81 127-207 21-101 (126)
55 1wi8_A EIF-4B, eukaryotic tran 99.6 7.2E-15 2.5E-19 133.7 11.2 79 127-207 14-93 (104)
56 1s79_A Lupus LA protein; RRM, 99.6 2.2E-15 7.7E-20 137.9 7.8 80 126-207 9-88 (103)
57 3ucg_A Polyadenylate-binding p 99.6 5E-15 1.7E-19 130.4 9.8 79 128-207 6-84 (89)
58 2m2b_A RNA-binding protein 10; 99.6 1.5E-15 5.1E-20 144.5 6.8 81 126-207 21-107 (131)
59 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.7E-15 3.3E-19 139.3 12.5 79 127-205 62-140 (140)
60 2kxn_B Transformer-2 protein h 99.6 3.1E-15 1.1E-19 142.4 8.9 83 126-208 44-126 (129)
61 1x4e_A RNA binding motif, sing 99.6 1.2E-15 4.2E-20 133.5 5.3 80 127-206 4-83 (85)
62 2kt5_A RNA and export factor-b 99.6 3.1E-14 1.1E-18 133.8 15.3 82 126-208 33-114 (124)
63 2cqp_A RNA-binding protein 12; 99.6 4.5E-15 1.6E-19 133.3 9.2 81 127-207 14-94 (98)
64 1x4b_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 137.2 10.0 80 127-207 26-105 (116)
65 2err_A Ataxin-2-binding protei 99.6 5.6E-15 1.9E-19 136.2 9.9 81 125-207 26-106 (109)
66 2fy1_A RNA-binding motif prote 99.6 5.4E-15 1.8E-19 138.0 9.9 81 126-207 5-85 (116)
67 2d9p_A Polyadenylate-binding p 99.6 7.4E-15 2.5E-19 133.3 10.3 80 126-207 13-92 (103)
68 2cqd_A RNA-binding region cont 99.6 1.2E-14 4.2E-19 134.8 11.9 82 125-207 14-95 (116)
69 2do0_A HnRNP M, heterogeneous 99.6 1.2E-14 4.1E-19 134.2 11.6 81 126-207 13-93 (114)
70 2ek1_A RNA-binding protein 12; 99.6 3.5E-15 1.2E-19 133.2 7.6 81 127-207 14-94 (95)
71 2dgv_A HnRNP M, heterogeneous 99.6 6.8E-15 2.3E-19 130.5 9.3 79 127-207 7-85 (92)
72 1p1t_A Cleavage stimulation fa 99.6 3.6E-15 1.2E-19 135.3 7.5 82 127-208 7-88 (104)
73 2cq3_A RNA-binding protein 9; 99.6 2.4E-14 8.2E-19 129.9 12.9 80 126-207 13-92 (103)
74 2mss_A Protein (musashi1); RNA 99.6 3E-15 1E-19 127.9 6.4 75 130-205 1-75 (75)
75 2dhg_A TRNA selenocysteine ass 99.6 4.4E-15 1.5E-19 134.9 7.8 81 126-207 7-89 (104)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.1E-14 3.7E-19 144.1 11.3 82 127-208 71-152 (165)
77 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-14 4.5E-19 130.4 10.8 78 127-207 8-89 (96)
78 2cqg_A TDP-43, TAR DNA-binding 99.6 2.3E-14 7.8E-19 130.0 12.3 81 125-207 12-92 (103)
79 2dgw_A Probable RNA-binding pr 99.6 2E-14 6.7E-19 127.5 11.6 79 126-207 8-86 (91)
80 2dh8_A DAZ-associated protein 99.6 9.8E-15 3.3E-19 133.0 9.8 82 125-207 13-94 (105)
81 2jwn_A Embryonic polyadenylate 99.6 5.9E-15 2E-19 138.5 8.4 80 127-207 35-114 (124)
82 2cpy_A RNA-binding protein 12; 99.5 1.2E-14 4.1E-19 134.9 10.3 80 127-208 14-94 (114)
83 2a3j_A U1 small nuclear ribonu 99.5 9.3E-15 3.2E-19 139.0 9.5 84 126-212 27-114 (127)
84 2kn4_A Immunoglobulin G-bindin 99.5 1.6E-14 5.5E-19 141.1 11.3 81 127-207 69-149 (158)
85 1wel_A RNA-binding protein 12; 99.5 1E-14 3.5E-19 137.3 9.5 81 127-208 24-104 (124)
86 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.6E-14 5.5E-19 141.2 11.3 82 126-207 37-118 (156)
87 1x4a_A Splicing factor, argini 99.5 4.1E-14 1.4E-18 129.8 13.1 79 126-207 20-98 (109)
88 2wbr_A GW182, gawky, LD47780P; 99.5 2.9E-14 9.9E-19 126.3 11.4 74 127-206 6-79 (89)
89 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.1E-15 1.4E-19 127.4 5.8 76 129-205 1-76 (77)
90 2ki2_A SS-DNA binding protein 99.5 2.5E-15 8.7E-20 132.9 4.6 79 129-208 2-80 (90)
91 2db1_A Heterogeneous nuclear r 99.5 1.8E-14 6E-19 134.9 10.4 80 126-207 15-97 (118)
92 1x5o_A RNA binding motif, sing 99.5 3.7E-14 1.3E-18 131.1 12.4 82 125-207 22-111 (114)
93 2j8a_A Histone-lysine N-methyl 99.5 1.6E-14 5.6E-19 136.2 9.7 90 128-217 2-107 (136)
94 2dis_A Unnamed protein product 99.5 1.1E-14 3.9E-19 133.3 8.3 81 127-207 7-91 (109)
95 2cpi_A CCR4-NOT transcription 99.5 1.7E-14 5.7E-19 133.3 9.4 82 127-208 14-101 (111)
96 1fj7_A Nucleolin RBD1, protein 99.5 2.9E-15 9.9E-20 135.5 4.0 80 126-207 15-94 (101)
97 3pgw_A U1-A; protein-RNA compl 99.5 1.8E-13 6.2E-18 145.6 18.5 77 125-206 204-281 (282)
98 3lqv_A PRE-mRNA branch site pr 99.5 3.2E-14 1.1E-18 131.6 10.2 80 127-209 7-86 (115)
99 2krb_A Eukaryotic translation 99.5 7.3E-15 2.5E-19 127.7 5.4 73 128-202 1-80 (81)
100 1nu4_A U1A RNA binding domain; 99.5 1.3E-14 4.6E-19 129.9 7.2 82 126-210 6-91 (97)
101 3q2s_C Cleavage and polyadenyl 99.5 1.3E-14 4.5E-19 151.4 8.3 82 127-208 67-150 (229)
102 1sjq_A Polypyrimidine tract-bi 99.5 2.2E-14 7.5E-19 131.9 8.4 75 127-207 15-91 (105)
103 2xnq_A Nuclear polyadenylated 99.5 5.2E-14 1.8E-18 127.0 10.7 74 126-207 20-94 (97)
104 2fc9_A NCL protein; structure 99.5 6.9E-14 2.4E-18 126.4 11.3 79 125-207 12-90 (101)
105 2cq1_A PTB-like protein L; RRM 99.5 8.4E-14 2.9E-18 127.1 11.7 77 125-207 12-90 (101)
106 2lea_A Serine/arginine-rich sp 99.5 1.2E-14 4E-19 139.4 6.3 81 127-207 46-126 (135)
107 1wg5_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 128.9 9.8 79 127-207 14-93 (104)
108 4f02_A Polyadenylate-binding p 99.5 5.2E-14 1.8E-18 144.4 11.4 82 127-208 14-95 (213)
109 2cpx_A Hypothetical protein FL 99.5 1.9E-14 6.6E-19 133.0 7.3 83 126-208 23-105 (115)
110 1x4d_A Matrin 3; structural ge 99.5 3.5E-14 1.2E-18 130.0 8.7 77 126-208 13-92 (102)
111 1wez_A HnRNP H', FTP-3, hetero 99.5 2.8E-14 9.5E-19 130.2 8.0 78 127-207 14-91 (102)
112 1iqt_A AUF1, heterogeneous nuc 99.5 1E-14 3.5E-19 124.4 4.7 75 130-205 1-75 (75)
113 3r27_A HnRNP L, heterogeneous 99.5 5E-14 1.7E-18 128.3 9.5 77 125-207 18-96 (100)
114 2fc8_A NCL protein; structure 99.5 8.3E-14 2.8E-18 126.0 10.9 79 126-207 13-91 (102)
115 2lmi_A GRSF-1, G-rich sequence 99.5 1.7E-14 5.8E-19 132.4 6.4 81 126-208 9-92 (107)
116 2jvo_A Nucleolar protein 3; nu 99.5 5.6E-14 1.9E-18 129.5 9.9 76 125-208 28-103 (108)
117 2ytc_A PRE-mRNA-splicing facto 99.5 9.5E-14 3.3E-18 121.2 10.4 75 126-206 10-85 (85)
118 1x4c_A Splicing factor, argini 99.5 1.3E-13 4.3E-18 126.7 11.6 74 127-207 14-92 (108)
119 2hgl_A HNRPF protein, heteroge 99.5 4.3E-14 1.5E-18 136.0 8.7 79 127-207 43-124 (136)
120 2f3j_A RNA and export factor b 99.5 1.5E-13 5.2E-18 137.8 12.8 82 126-208 86-167 (177)
121 2dnn_A RNA-binding protein 12; 99.5 1.2E-13 4E-18 127.9 10.7 78 127-207 15-92 (109)
122 2la4_A Nuclear and cytoplasmic 99.5 7.3E-14 2.5E-18 126.2 8.8 75 127-207 26-100 (101)
123 2jvr_A Nucleolar protein 3; RN 99.5 9.4E-14 3.2E-18 129.0 9.6 77 127-207 27-104 (111)
124 1fjc_A Nucleolin RBD2, protein 99.5 5.1E-14 1.8E-18 125.9 7.4 78 125-207 13-90 (96)
125 2dnq_A RNA-binding protein 4B; 99.5 1.1E-13 3.9E-18 122.4 9.5 74 126-207 6-79 (90)
126 3egn_A RNA-binding protein 40; 99.5 2.1E-14 7E-19 138.4 4.8 83 126-208 43-130 (143)
127 2xs2_A Deleted in azoospermia- 99.5 3.8E-14 1.3E-18 128.4 6.2 79 127-208 8-86 (102)
128 2e5j_A Methenyltetrahydrofolat 99.5 1.3E-13 4.6E-18 123.8 9.7 77 127-208 18-94 (97)
129 1x4g_A Nucleolysin TIAR; struc 99.5 1.2E-13 4E-18 126.9 9.5 77 126-208 23-99 (109)
130 3md3_A Nuclear and cytoplasmic 99.5 2.4E-13 8.1E-18 131.9 12.1 80 127-206 86-165 (166)
131 2dgt_A RNA-binding protein 30; 99.5 2.9E-13 9.8E-18 120.3 11.4 74 126-207 8-81 (92)
132 2ad9_A Polypyrimidine tract-bi 99.5 9.2E-14 3.1E-18 130.6 8.4 76 126-207 29-106 (119)
133 1why_A Hypothetical protein ri 99.5 2.5E-13 8.6E-18 121.9 10.7 75 127-207 16-92 (97)
134 1x4f_A Matrin 3; structural ge 99.4 1.4E-13 4.8E-18 128.0 9.0 78 125-208 22-102 (112)
135 2lcw_A RNA-binding protein FUS 99.2 6.7E-15 2.3E-19 136.7 0.0 83 126-208 5-95 (116)
136 2cpj_A Non-POU domain-containi 99.4 1.9E-13 6.6E-18 123.1 9.4 76 126-207 13-88 (99)
137 2dgu_A Heterogeneous nuclear r 99.4 2.9E-13 9.9E-18 123.0 10.6 74 127-208 10-83 (103)
138 1fxl_A Paraneoplastic encephal 99.4 2.6E-13 9E-18 131.7 11.0 80 128-207 2-81 (167)
139 1wf1_A RNA-binding protein RAL 99.4 4.5E-13 1.5E-17 123.2 11.6 73 127-207 26-99 (110)
140 1wex_A Hypothetical protein (r 99.4 2E-13 6.8E-18 125.3 9.1 76 126-207 13-90 (104)
141 1whx_A Hypothetical protein ri 99.4 1.6E-13 5.6E-18 126.9 8.2 75 127-207 9-83 (111)
142 2i2y_A Fusion protein consists 99.4 2.4E-13 8.2E-18 131.9 9.7 77 127-208 72-148 (150)
143 1b7f_A Protein (SXL-lethal pro 99.4 2.5E-13 8.7E-18 132.3 9.9 81 127-207 2-82 (168)
144 2hvz_A Splicing factor, argini 99.4 9.6E-14 3.3E-18 125.4 6.2 75 129-208 1-75 (101)
145 2dnp_A RNA-binding protein 14; 99.4 3.7E-13 1.3E-17 119.1 9.8 74 126-207 7-80 (90)
146 2g4b_A Splicing factor U2AF 65 99.4 3.8E-13 1.3E-17 131.8 10.7 78 128-205 94-171 (172)
147 2e44_A Insulin-like growth fac 99.4 2.6E-13 9E-18 121.3 8.7 77 127-207 14-91 (96)
148 2cpd_A Apobec-1 stimulating pr 99.4 9.4E-13 3.2E-17 118.6 12.2 74 126-207 13-88 (99)
149 2kvi_A Nuclear polyadenylated 99.4 2.1E-13 7E-18 122.5 7.6 75 126-208 8-83 (96)
150 2e5g_A U6 snRNA-specific termi 99.4 4.5E-13 1.5E-17 119.7 8.5 75 127-207 7-81 (94)
151 1l3k_A Heterogeneous nuclear r 99.4 6.3E-13 2.1E-17 133.0 10.4 82 126-208 11-92 (196)
152 2dha_A FLJ20171 protein; RRM d 99.4 2.8E-13 9.7E-18 128.0 7.2 79 127-207 22-104 (123)
153 1wg1_A KIAA1579 protein, homol 99.4 5.9E-13 2E-17 117.5 8.8 74 127-207 4-77 (88)
154 2cqh_A IGF-II mRNA-binding pro 99.4 5.6E-13 1.9E-17 118.5 8.4 74 127-207 7-82 (93)
155 2qfj_A FBP-interacting repress 99.4 6.8E-13 2.3E-17 134.8 10.0 81 127-207 124-204 (216)
156 2yh0_A Splicing factor U2AF 65 99.4 1.5E-12 5.3E-17 130.4 12.4 82 126-207 112-193 (198)
157 4f02_A Polyadenylate-binding p 99.4 1.2E-12 4.2E-17 134.2 11.2 79 128-208 103-181 (213)
158 1x5p_A Negative elongation fac 99.4 2.2E-12 7.6E-17 115.8 11.6 73 127-207 14-86 (97)
159 2hgm_A HNRPF protein, heteroge 99.4 4.6E-13 1.6E-17 127.1 7.4 78 127-207 41-120 (126)
160 3d2w_A TAR DNA-binding protein 99.4 1.1E-12 3.8E-17 116.5 9.4 73 127-208 10-84 (89)
161 2cjk_A Nuclear polyadenylated 99.4 4.5E-13 1.6E-17 130.6 7.5 80 127-207 86-165 (167)
162 2hgn_A Heterogeneous nuclear r 99.4 1.6E-13 5.4E-18 132.5 4.1 78 127-207 45-122 (139)
163 2dnl_A Cytoplasmic polyadenyla 99.4 7.6E-13 2.6E-17 122.7 8.4 77 127-206 7-86 (114)
164 2cq2_A Hypothetical protein LO 99.4 8.4E-13 2.9E-17 123.1 8.6 76 127-208 24-106 (114)
165 2diu_A KIAA0430 protein; struc 99.4 9E-13 3.1E-17 118.0 8.0 71 128-208 8-84 (96)
166 1l3k_A Heterogeneous nuclear r 99.4 1.5E-12 5.2E-17 130.2 10.4 81 127-208 103-183 (196)
167 1b7f_A Protein (SXL-lethal pro 99.4 1.9E-12 6.4E-17 126.1 10.7 79 127-205 88-168 (168)
168 3beg_B Splicing factor, argini 99.4 7E-13 2.4E-17 123.3 7.2 73 127-206 15-92 (115)
169 3md3_A Nuclear and cytoplasmic 99.3 1.6E-12 5.4E-17 126.0 9.5 78 129-207 1-78 (166)
170 2pe8_A Splicing factor 45; RRM 99.3 4E-12 1.4E-16 116.8 11.1 81 127-207 7-93 (105)
171 3tyt_A Heterogeneous nuclear r 99.3 2.1E-12 7.3E-17 132.3 10.3 76 127-207 3-79 (205)
172 2qfj_A FBP-interacting repress 99.3 1.6E-12 5.3E-17 132.1 9.0 82 127-208 27-108 (216)
173 2hzc_A Splicing factor U2AF 65 99.3 2E-12 6.9E-17 113.1 8.5 71 126-203 4-85 (87)
174 1sjr_A Polypyrimidine tract-bi 99.3 2.6E-12 9E-17 126.9 9.9 78 127-208 45-124 (164)
175 1fxl_A Paraneoplastic encephal 99.3 2.4E-12 8.3E-17 124.8 9.5 79 127-205 87-167 (167)
176 3nmr_A Cugbp ELAV-like family 99.3 2.1E-12 7.3E-17 126.4 9.1 79 127-206 94-175 (175)
177 3zzy_A Polypyrimidine tract-bi 99.3 4.9E-12 1.7E-16 120.5 10.6 77 127-208 27-106 (130)
178 2e5i_A Heterogeneous nuclear r 99.3 1.1E-11 3.6E-16 117.4 12.8 75 128-208 25-102 (124)
179 2cjk_A Nuclear polyadenylated 99.3 2.7E-12 9.2E-17 125.0 8.8 80 127-208 2-81 (167)
180 3pgw_A U1-A; protein-RNA compl 99.3 6.4E-12 2.2E-16 133.6 11.3 82 125-209 6-91 (282)
181 3nmr_A Cugbp ELAV-like family 99.3 4.6E-12 1.6E-16 124.0 9.4 81 127-207 2-87 (175)
182 2voo_A Lupus LA protein; RNA-b 99.3 5.6E-12 1.9E-16 128.1 10.1 79 127-207 108-186 (193)
183 2bz2_A Negative elongation fac 99.3 4.7E-12 1.6E-16 119.1 8.5 74 127-208 38-111 (121)
184 1fje_B Nucleolin RBD12, protei 99.3 1E-11 3.4E-16 122.3 10.5 76 127-207 98-173 (175)
185 1wf0_A TDP-43, TAR DNA-binding 99.3 3.2E-12 1.1E-16 112.5 6.1 74 127-207 4-77 (88)
186 2ghp_A U4/U6 snRNA-associated 99.3 1E-11 3.6E-16 132.7 9.8 82 125-207 207-290 (292)
187 3smz_A Protein raver-1, ribonu 99.2 1.9E-11 6.4E-16 130.2 11.4 81 127-207 94-174 (284)
188 2adc_A Polypyrimidine tract-bi 99.2 9.2E-12 3.2E-16 129.1 8.1 76 127-207 33-109 (229)
189 3smz_A Protein raver-1, ribonu 99.2 2.3E-11 7.8E-16 129.5 10.7 82 126-208 182-264 (284)
190 3u1l_A PRE-mRNA-splicing facto 99.2 1.1E-11 3.7E-16 129.9 7.5 78 125-208 131-229 (240)
191 3tyt_A Heterogeneous nuclear r 99.2 1.6E-11 5.5E-16 125.8 8.3 78 126-205 121-204 (205)
192 1fje_B Nucleolin RBD12, protei 99.2 5.5E-12 1.9E-16 124.2 4.2 80 126-207 11-90 (175)
193 3v4m_A Splicing factor U2AF 65 99.2 5.2E-11 1.8E-15 109.2 10.0 83 126-208 3-97 (105)
194 2dit_A HIV TAT specific factor 99.2 4.1E-11 1.4E-15 110.7 8.7 78 127-208 14-102 (112)
195 3sde_A Paraspeckle component 1 99.2 7.7E-11 2.6E-15 124.6 11.3 76 126-207 20-95 (261)
196 1qm9_A Polypyrimidine tract-bi 99.2 2.5E-11 8.7E-16 122.1 6.6 76 128-208 3-79 (198)
197 1qm9_A Polypyrimidine tract-bi 99.1 8.4E-11 2.9E-15 118.3 9.6 77 126-207 118-196 (198)
198 2ghp_A U4/U6 snRNA-associated 99.1 7.9E-11 2.7E-15 125.8 9.2 81 127-208 116-197 (292)
199 3sde_A Paraspeckle component 1 99.1 9.7E-11 3.3E-15 123.8 9.6 80 127-207 95-178 (261)
200 1jmt_A Splicing factor U2AF 35 99.1 3.2E-11 1.1E-15 110.4 5.1 73 132-205 19-103 (104)
201 3ue2_A Poly(U)-binding-splicin 99.1 1.4E-10 4.8E-15 108.8 9.1 81 127-207 19-108 (118)
202 2adc_A Polypyrimidine tract-bi 99.1 1.9E-10 6.3E-15 119.2 9.1 77 126-207 149-227 (229)
203 2g4b_A Splicing factor U2AF 65 99.1 2.7E-10 9.4E-15 111.3 8.6 73 127-206 3-86 (172)
204 2yh0_A Splicing factor U2AF 65 99.0 3.4E-10 1.2E-14 113.2 8.5 74 127-207 3-87 (198)
205 3tht_A Alkylated DNA repair pr 98.9 1.2E-09 4.1E-14 120.2 9.3 77 125-207 15-98 (345)
206 3s6e_A RNA-binding protein 39; 98.9 7E-09 2.4E-13 96.6 10.6 84 127-215 6-99 (114)
207 2d9o_A DNAJ (HSP40) homolog, s 98.9 6.6E-09 2.3E-13 94.5 9.8 63 138-207 27-89 (100)
208 1owx_A Lupus LA protein, SS-B, 98.8 4E-08 1.4E-12 92.2 11.4 87 125-217 15-107 (121)
209 2dnr_A Synaptojanin-1; RRM dom 98.7 2.3E-08 7.8E-13 88.8 8.4 73 126-207 5-85 (91)
210 1ufw_A Synaptojanin 2; RNP dom 98.5 1.5E-07 5.2E-12 83.9 7.4 72 125-205 12-92 (95)
211 3dxb_A Thioredoxin N-terminall 98.4 5.2E-07 1.8E-11 92.7 7.9 67 141-207 142-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.9 4.4E-05 1.5E-09 69.6 9.2 74 127-206 20-98 (117)
213 1wey_A Calcipressin 1; structu 97.1 0.00091 3.1E-08 60.6 7.1 76 127-208 4-84 (104)
214 1uw4_A UPF3X; nonsense mediate 95.2 0.056 1.9E-06 47.9 8.0 68 129-196 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 95.0 0.088 3E-06 47.1 8.5 54 128-190 16-69 (100)
216 2dhx_A Poly (ADP-ribose) polym 94.4 0.099 3.4E-06 47.2 7.4 68 127-203 7-79 (104)
217 1wwh_A Nucleoporin 35, nucleop 93.9 0.16 5.5E-06 47.1 7.9 71 127-205 23-94 (119)
218 3ctr_A Poly(A)-specific ribonu 93.5 0.08 2.7E-06 47.5 5.0 53 130-191 8-60 (101)
219 2kn4_A Immunoglobulin G-bindin 90.7 0.17 5.9E-06 48.2 4.1 37 157-195 2-38 (158)
220 3p3d_A Nucleoporin 53; structu 90.6 0.34 1.2E-05 45.6 5.8 88 128-219 7-108 (132)
221 2i2y_A Fusion protein consists 90.0 0.15 5E-06 48.5 2.8 47 158-207 3-50 (150)
222 2l08_A Regulator of nonsense t 89.2 0.49 1.7E-05 42.3 5.4 69 128-196 9-79 (97)
223 3pq1_A Poly(A) RNA polymerase; 85.0 0.46 1.6E-05 54.0 3.5 64 128-198 53-116 (464)
224 3d45_A Poly(A)-specific ribonu 66.6 12 0.0004 43.0 8.3 55 128-191 440-494 (507)
225 3m91_B Prokaryotic ubiquitin-l 64.1 2.4 8.3E-05 31.9 1.2 24 800-823 15-38 (44)
226 2v75_A Nuclear polyadenylated 56.1 29 0.001 30.6 6.8 61 764-824 6-72 (104)
227 3qks_C DNA double-strand break 38.2 15 0.0005 26.0 1.7 25 772-796 7-31 (34)
228 3m9d_G Prokaryotic ubiquitin-l 33.7 6.4 0.00022 32.4 -0.8 24 800-823 39-62 (68)
229 2g0c_A ATP-dependent RNA helic 22.1 1.4E+02 0.0049 24.3 5.6 67 130-205 2-74 (76)
230 4f25_A Polyadenylate-binding p 20.2 22 0.00074 31.7 0.0 17 127-143 96-112 (115)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=9.3e-38 Score=288.57 Aligned_cols=106 Identities=44% Similarity=0.889 Sum_probs=101.3
Q ss_pred hHHhhhhcCCCCchhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhh
Q 003151 734 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 813 (844)
Q Consensus 734 ~~~~l~~~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld 813 (844)
++++||++||++|++||+|+|+|++||.++|.++|||||++||+||||++|++||+||+++|.+|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 003151 814 DEAEMFVLKMWRMLIFEIKKVETGLA 839 (844)
Q Consensus 814 ~~a~~fv~~lwr~life~~~~~~g~~ 839 (844)
++|+.||.+||||||||+++++.||+
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999996
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.86 E-value=3.2e-22 Score=183.50 Aligned_cols=92 Identities=21% Similarity=0.435 Sum_probs=83.9
Q ss_pred CCchhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhc-cCCHHHHHHHHHHhhh-HHHHHHHH
Q 003151 744 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 821 (844)
Q Consensus 744 ~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~-~~~~~~l~~~l~~~ld-~~a~~fv~ 821 (844)
+.++.+|+++|||..|+-. .|||||++||++|||++|++|||||+++|.. +.+|+.|+++|++||| ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3467899999999999865 4799999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 003151 822 KMWRMLIFEIKKVETGLAL 840 (844)
Q Consensus 822 ~lwr~life~~~~~~g~~~ 840 (844)
+||+||||- .+...||..
T Consensus 81 eLW~LLi~a-q~~~~GIP~ 98 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIPS 98 (111)
T ss_dssp HHHHHHHHH-TTSSSSCCH
T ss_pred HHHHHHHHh-hcCCcCcCH
Confidence 999999964 788888864
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=5.1e-19 Score=201.43 Aligned_cols=83 Identities=18% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.|++.+|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 875
No 4
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=159.93 Aligned_cols=68 Identities=24% Similarity=0.390 Sum_probs=64.8
Q ss_pred HhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003151 764 LHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEI 831 (844)
Q Consensus 764 ~~~~~~pwi~kki~e~lG~~e~~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~a~~fv~~lwr~life~ 831 (844)
-.+.|||||++||++|||++|++||+||+++|..+.+|+.|+++|++|||++|+.||.+||+|||+-.
T Consensus 14 ~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq 81 (92)
T 1x4q_A 14 ELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGR 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999755
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=151.18 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=148.54 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=80.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhHH
Q 003151 207 ATRE 210 (844)
Q Consensus 207 ~~kk 210 (844)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6544
No 7
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=156.82 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=77.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G--~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..++|||||||+.+++++|+.+|+.|| .|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=4.1e-16 Score=145.13 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=77.6
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred e
Q 003151 205 D 205 (844)
Q Consensus 205 a 205 (844)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=1.1e-16 Score=145.37 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCcEEEecCCCC------CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC-eE
Q 003151 127 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 199 (844)
Q Consensus 127 ~~~tLfVgNLp~------~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G-r~ 199 (844)
..++|||+|||+ .+++.+|+.+|+.||.|.+|.|+.++.||+++|||||+|.+.++|..||..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEeechhHHHH
Q 003151 200 LMLKVDQATREYL 212 (844)
Q Consensus 200 L~V~~a~~~kk~l 212 (844)
|.|.++....+|.
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999998866553
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-17 Score=146.50 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.9
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEEEee
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 205 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~I~Gr~L~V~~a 205 (844)
+++|||+|||+.+|+++|+.+|+.|| .|.+|+|+.++.+|.++|||||+|.+.++|.+||..| |+..|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999877 577899999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=142.55 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=75.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCc--eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----EeCCeEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQEL 200 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~--I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~----~I~Gr~L 200 (844)
.-.||||+|||+.+|+++|+.+|+.||. |.+|++++|+.||.++|||||+|.+.++|..||..|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999995 679999999999999999999999999999999999996 6999999
Q ss_pred EEEeech
Q 003151 201 MLKVDQA 207 (844)
Q Consensus 201 ~V~~a~~ 207 (844)
.|.|+.+
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=135.09 Aligned_cols=81 Identities=16% Similarity=0.328 Sum_probs=77.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=135.40 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=77.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998889999999999999999999999999999999999999873
No 14
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-16 Score=142.93 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=77.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 35789999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 664
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=8.1e-16 Score=134.34 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 003151 206 Q 206 (844)
Q Consensus 206 ~ 206 (844)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=138.81 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr 198 (844)
+.++|||+|||+.+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 5789999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred EEEEEeec
Q 003151 199 ELMLKVDQ 206 (844)
Q Consensus 199 ~L~V~~a~ 206 (844)
.|.|.++.
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999873
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1e-15 Score=133.13 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=77.4
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred h
Q 003151 208 T 208 (844)
Q Consensus 208 ~ 208 (844)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=9.5e-16 Score=137.54 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
|.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hhHH
Q 003151 207 ATRE 210 (844)
Q Consensus 207 ~~kk 210 (844)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.6e-15 Score=140.67 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=135.14 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=138.32 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=79.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 653
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=136.55 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=77.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999998899999999999999999999999 8999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=135.74 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=78.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
++++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=136.59 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=135.61 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=79.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 663
No 26
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-15 Score=142.11 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=79.0
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 119 a~~ 121 (139)
T 1u6f_A 119 AAS 121 (139)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=137.40 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.9e-15 Score=138.81 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 29
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=139.88 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=78.9
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 865
No 30
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=3.7e-16 Score=138.78 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.7
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G--~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+|||||||+.+++++|+.+|+.|| .|.++.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999886
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 31
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=138.31 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=138.25 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=78.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++.+|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 102 ~ 102 (106)
T 1p27_B 102 V 102 (106)
T ss_dssp E
T ss_pred C
Confidence 5
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=3.5e-15 Score=138.16 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 93 ~~ 94 (115)
T 2dgo_A 93 TR 94 (115)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=136.05 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=78.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+ .|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999999 99999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=1.7e-15 Score=141.03 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=73.5
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||||||+.+++++|+.+|+.||.|.+|+|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999984 55899999999999999999999999999999999998765
No 36
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=7e-16 Score=139.82 Aligned_cols=80 Identities=20% Similarity=0.426 Sum_probs=74.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~-~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..++|||+|||+.+++++|+.+|+.|| |.++.|+.++ .+|+++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 579999999999999999999999999 9999999987 68999999999999999999999 89999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 653
No 37
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=3.2e-15 Score=136.48 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|.++.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 357999999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred c
Q 003151 206 Q 206 (844)
Q Consensus 206 ~ 206 (844)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-15 Score=133.64 Aligned_cols=82 Identities=17% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=137.15 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC------CcEeCCeE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 199 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln------g~~I~Gr~ 199 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 357899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEeech
Q 003151 200 LMLKVDQA 207 (844)
Q Consensus 200 L~V~~a~~ 207 (844)
|.|.|+..
T Consensus 93 l~v~~a~~ 100 (111)
T 1x4h_A 93 LKVDLAVT 100 (111)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 99999865
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=134.17 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=76.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357999999999999999999999999999999999996 5999999999999999999999999999999999999987
Q ss_pred c
Q 003151 206 Q 206 (844)
Q Consensus 206 ~ 206 (844)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=2.1e-15 Score=137.46 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe---CCeEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELML 202 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I---~Gr~L~V 202 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..+ +|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3579999999999999999999999999999999999988999999999999999999999999999998 8999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.++..
T Consensus 91 ~~a~~ 95 (106)
T 2dgp_A 91 KPADS 95 (106)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 99865
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=136.05 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 91 ~~ 92 (102)
T 1x5s_A 91 KS 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=136.15 Aligned_cols=83 Identities=20% Similarity=0.417 Sum_probs=78.7
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 202 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d-~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~I~Gr~L~V 202 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +.+|.++|||||+|.+.++|..||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345799999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.|+..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99865
No 44
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=4.2e-15 Score=130.61 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=74.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++.+|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||. ++|..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 457899999999999999999999999999999999998899999999999999999999997 4889999999999875
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=135.12 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=78.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCcee-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeE----E
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 200 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~-s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~----L 200 (844)
.+.++|||+|||+.+++++|+.+|+.||.|. ++.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3579999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEeech
Q 003151 201 MLKVDQA 207 (844)
Q Consensus 201 ~V~~a~~ 207 (844)
.|.|+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998864
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=137.33 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=78.3
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCcee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~--------s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
..+.++|||+|||+.+++++|+.+|+.||.|. .|.|+.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34579999999999999999999999999999 5999999889999999999999999999999999999999
Q ss_pred CeEEEEEeech
Q 003151 197 GQELMLKVDQA 207 (844)
Q Consensus 197 Gr~L~V~~a~~ 207 (844)
|+.|.|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999998865
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=135.09 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=77.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~---tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++. +|.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999999875 6699999999999999999999999999999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.++..
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99865
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=4.8e-15 Score=134.90 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC---eEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 202 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G---r~L~V 202 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 458999999999999999999999999999999999997 89999999999999999999999999999998 99999
Q ss_pred Eeechh
Q 003151 203 KVDQAT 208 (844)
Q Consensus 203 ~~a~~~ 208 (844)
.|+...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998653
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=5.5e-15 Score=134.29 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=76.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3579999999999999999999999998 999999999889999999999999999999999 89999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=130.95 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCC-CccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk-~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+++|||+|||+.+++++|+.+|+.||.|..+.++.++.++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876666 9999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 51
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=138.74 Aligned_cols=83 Identities=13% Similarity=0.266 Sum_probs=75.8
Q ss_pred CCCcEEEecCCCCCC------ChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe-
Q 003151 126 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 198 (844)
Q Consensus 126 ~~~~tLfVgNLp~~v------te~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr- 198 (844)
...++|||||||+.+ ++.+|+.+|+.||.|.+|.|+. .+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 6789999999999999999983 6899999999999999999999999999999998
Q ss_pred EEEEEeechhHH
Q 003151 199 ELMLKVDQATRE 210 (844)
Q Consensus 199 ~L~V~~a~~~kk 210 (844)
.|.|.++....+
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999876543
No 52
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=132.11 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=75.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++ +.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3457999999999999999999999999999999999984 34689999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 866
No 53
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=4.6e-15 Score=136.82 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446789999999999999999999999999999999999889999999999999999999999976 5999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=3.7e-15 Score=140.26 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=78.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 101 ~ 101 (126)
T 3ex7_B 101 V 101 (126)
T ss_dssp E
T ss_pred C
Confidence 5
No 55
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.2e-15 Score=133.74 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=75.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~t-Gk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+ |.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 579999999999999999999999999 999999999877 999999999999999999999 89999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 56
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=137.91 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...++|||||||+.+++++|+.+|+.||.|.+|.|+.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.|+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3578999999999999999999999999999999999975 9999999999999999999999 8999999999999987
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=5e-15 Score=130.41 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=76.0
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998865
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=144.53 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=77.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----EeCCeE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 199 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s--~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~----~I~Gr~ 199 (844)
.+.++|||||||+.+++++|+.+|+.||.|.. |+|+.++.+|+++|||||+|.+. +|..||..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEeech
Q 003151 200 LMLKVDQA 207 (844)
Q Consensus 200 L~V~~a~~ 207 (844)
|.|.++..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99999866
No 59
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=9.7e-15 Score=139.33 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=75.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999999889999999999999999999999999999999999999875
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=3.1e-15 Score=142.41 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 653
No 61
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=133.48 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=76.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999887653
No 62
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=3.1e-14 Score=133.80 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 357899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=133.34 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=76.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 57899999999999999999999999999988888888899999999999999999999999999999999999999875
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=137.20 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=76.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 478999999999999999999999999999999999988999999999999999999999998 9999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=136.16 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.++ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3357899999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=5.4e-15 Score=137.97 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 67
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.4e-15 Score=133.28 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=76.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36889999999999999999999999999999999987 8999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 91 ~~ 92 (103)
T 2d9p_A 91 QR 92 (103)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=134.83 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=77.7
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..||+ .|+|+.|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 854
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=134.20 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 357899999999999999999999999999999999996 7999999999999999999999999999999999999997
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=3.5e-15 Score=133.17 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999998888899999999999999999999999999999999999999875
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=6.8e-15 Score=130.50 Aligned_cols=79 Identities=25% Similarity=0.428 Sum_probs=75.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5789999999999999999999999999999999884 89999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 5
No 72
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-15 Score=135.31 Aligned_cols=82 Identities=29% Similarity=0.532 Sum_probs=78.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 65
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-14 Score=129.92 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 357999999999999999999999999999999999884 348999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 91 ~~ 92 (103)
T 2cq3_A 91 TA 92 (103)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=3e-15 Score=127.87 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=72.2
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 8999999999999875
No 75
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=134.90 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=77.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhc-CCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE-eCCeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~-~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~-I~Gr~L~V~ 203 (844)
.+.++|||+|||+.+++++|+.+|+. ||.|.+|.|+.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 35789999999999999999999999 9999999999997 99999999999999999999999999999 999999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 8855
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=1.1e-14 Score=144.05 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|.++|||||+|.+..+|..||..|||..|+|+.|.|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 151 ~~ 152 (165)
T 1rk8_A 151 VK 152 (165)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 77
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=130.40 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCcEEEecCCCCCCChHHHH----HhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr----~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
..++|||+|||+.+++++|+ .+|+.||.|.+|.|+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 47899999999999999999 99999999999999998644 899999999999999999999999999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99865
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=130.04 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=76.0
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999998 57899999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 90 a~~ 92 (103)
T 2cqg_A 90 PNS 92 (103)
T ss_dssp CCT
T ss_pred cCC
Confidence 865
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=127.53 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...++|||+|||+.+++++|+.+|+.| .|..+.|+.+ .+|+++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 357899999999999999999999999 8999999999 799999999999999999999999 9999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=9.8e-15 Score=132.96 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=77.7
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||+.|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999998 99999999999998
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 765
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=5.9e-15 Score=138.49 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=134.88 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCce-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I-~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+|||+.+++++|+.+|+.||.| ..|.|+.++ +|.++|||||+|.+.++|..||.. ||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 57899999999999999999999999999 899999997 999999999999999999999997 999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 83
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=9.3e-15 Score=138.97 Aligned_cols=84 Identities=12% Similarity=0.262 Sum_probs=74.8
Q ss_pred CCCcEEEecCCCCCCChHHHH----HhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr----~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
.+.++|||||||+.+++++|+ .+|+.||.|..|.+.. +|+++|||||+|.+.++|..||..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999998765 7999999999987743 789999999999999999999999999999999999
Q ss_pred EEeechhHHHH
Q 003151 202 LKVDQATREYL 212 (844)
Q Consensus 202 V~~a~~~kk~l 212 (844)
|.|+......+
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99998764443
No 84
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.55 E-value=1.6e-14 Score=141.11 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 149 ~ 149 (158)
T 2kn4_A 149 Y 149 (158)
T ss_dssp C
T ss_pred C
Confidence 5
No 85
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=137.33 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=75.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|..||.|..+.++.+..+|+++|||||+|.+.++|..||. |||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 56899999999999999999999999999886666666799999999999999999999999 99999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=1.6e-14 Score=141.16 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=78.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 87
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.1e-14 Score=129.80 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|.. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3578999999999999999999999999999999955 4668999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=2.9e-14 Score=126.32 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.+..||||||++.++++.|+.+|..||+|.+++++. ++|||||+|.+.++|..|+..|||..|+|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999865 57999999999999999999999999999999999994
No 89
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.1e-15 Score=127.39 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.3
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998899999999999999999999999999 9999999999986
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=2.5e-15 Score=132.88 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=74.2
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeechh
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~~ 208 (844)
++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999889999999999999999 99999999999999999999998764
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=1.8e-14 Score=134.89 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~---I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
...++|||+|||+.+++++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35789999999999999999999999999 89999999964 9999999999999999999999 8999999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 92
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=131.07 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe--------C
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 196 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I--------~ 196 (844)
..+.++|||+|||+.+++++|+.+|..||.|..+.|+.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEeech
Q 003151 197 GQELMLKVDQA 207 (844)
Q Consensus 197 Gr~L~V~~a~~ 207 (844)
++.|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999864
No 93
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-14 Score=136.25 Aligned_cols=90 Identities=12% Similarity=0.220 Sum_probs=77.7
Q ss_pred CcEEEecCC----CCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhCCc
Q 003151 128 QTKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKF 193 (844)
Q Consensus 128 ~~tLfVgNL----p~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~----~e~----A~~Al~--~Lng~ 193 (844)
++.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.+ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 433 788888 78999
Q ss_pred EeCCeEEEEEeechh--HHHHHHHHH
Q 003151 194 NIDGQELMLKVDQAT--REYLERYVD 217 (844)
Q Consensus 194 ~I~Gr~L~V~~a~~~--kk~le~~k~ 217 (844)
.|+|+.|+|.++... .+.++.+..
T Consensus 82 ~I~Gr~irV~ln~~g~~~~~~~~~i~ 107 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSILNNIISKFVE 107 (136)
T ss_dssp EETTEEEEEEECCTTHHHHHHHHHHH
T ss_pred eecCcEEEEEECcccHHHHHHHHHHH
Confidence 999999999998655 344444443
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=133.27 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=76.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCc-eeEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~-I~s~ki~-~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~I~Gr~L~V 202 (844)
+.++|||+|||+.+++++|+.+|..||. |..+.++ .+..+|.++|||||+|.+.++|..||..|| ++.|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999998 9999998 777889999999999999999999999996 59999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.|+..
T Consensus 87 ~~a~~ 91 (109)
T 2dis_A 87 DWAEP 91 (109)
T ss_dssp EESCS
T ss_pred EEcCC
Confidence 99865
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=133.31 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=75.5
Q ss_pred CCcEEEecCCCCCCChHHHH---HhhhcCCceeEEEEeecCCCC---CCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 127 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr---~lF~~~G~I~s~ki~~d~~tG---k~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
..++|||+|||+.+++++|+ .+|+.||.|..+.|+.+..+| .++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 999999999999999887544 566999999999999999999999999999999
Q ss_pred EEEeechh
Q 003151 201 MLKVDQAT 208 (844)
Q Consensus 201 ~V~~a~~~ 208 (844)
.|.|+...
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99998653
No 96
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-15 Score=135.51 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 667777789999999999999999999999 9999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 97
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=1.8e-13 Score=145.62 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=71.7
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~L~V~ 203 (844)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4568899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred eec
Q 003151 204 VDQ 206 (844)
Q Consensus 204 ~a~ 206 (844)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 98
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=3.2e-14 Score=131.64 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.+ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5789999999999999999999999999999999864 5669999999999999999999999999999999999998
Q ss_pred hhH
Q 003151 207 ATR 209 (844)
Q Consensus 207 ~~k 209 (844)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 653
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=7.3e-15 Score=127.69 Aligned_cols=73 Identities=15% Similarity=0.334 Sum_probs=68.1
Q ss_pred CcEEEecCCCCCC------ChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe-EE
Q 003151 128 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (844)
Q Consensus 128 ~~tLfVgNLp~~v------te~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr-~L 200 (844)
.++|||+|||+.+ ++++|+.+|+.||.|.++.++. .+|.++|||||+|.+.++|..||..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 6699999999999999999873 5899999999999999999999999999999999 88
Q ss_pred EE
Q 003151 201 ML 202 (844)
Q Consensus 201 ~V 202 (844)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 100
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=1.3e-14 Score=129.86 Aligned_cols=82 Identities=13% Similarity=0.310 Sum_probs=75.4
Q ss_pred CCCcEEEecCCCCCCChHHHH----HhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr----~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
.+.++|||+|||+.+++++|+ .+|+.||.|..+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 357899999999999999999 9999999999999873 678889999999999999999999999999999999
Q ss_pred EEeechhHH
Q 003151 202 LKVDQATRE 210 (844)
Q Consensus 202 V~~a~~~kk 210 (844)
|.|+.....
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999976543
No 101
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=1.3e-14 Score=151.42 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G--~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..++|||+||++.+++++|+.+|+.|| .|.+|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=131.86 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~I~Gr~L~V~~ 204 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.|+.+ +|||||+|.+.++|..||..|+ |..|+|+.|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5789999999999999999999999999999999875 5999999999999999999886 4799999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 103
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=5.2e-14 Score=127.00 Aligned_cols=74 Identities=16% Similarity=0.390 Sum_probs=69.5
Q ss_pred CCCcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 126 ~~~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
.+.++|||||||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3579999999998 99999999999999999999983 58999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 104
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.9e-14 Score=126.39 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.| .++.+ .+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3458999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 88 a~~ 90 (101)
T 2fc9_A 88 QGP 90 (101)
T ss_dssp CSS
T ss_pred cCC
Confidence 865
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.4e-14 Score=127.10 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=70.2
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCcEeCCeEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELML 202 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L--ng~~I~Gr~L~V 202 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ++..|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999988764 599999999999999999976 578899999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.|+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99865
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.2e-14 Score=139.43 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=77.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 126 ~ 126 (135)
T 2lea_A 126 Y 126 (135)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.5e-14 Score=128.90 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=73.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s-~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..++|||+|||+.+++++|+.+|..||.|.. |.|+.+ .+|+++|||||+|.+.++|..||.. ||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 5789999999999999999999999999987 888888 7999999999999999999999997 999999999999876
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 43
No 108
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=5.2e-14 Score=144.44 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=78.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
|.+||||||||+.+++++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|..||..|||..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 109
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=133.01 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35789999999999999999999999999944333222238899999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=129.96 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=70.3
Q ss_pred CCCcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--cEeCCeEEEE
Q 003151 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (844)
Q Consensus 126 ~~~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng--~~I~Gr~L~V 202 (844)
.+.++|||+|||+ .+++++|+.+|+.||.|.++.|+.++ |||||+|.+.++|..||..||| ..|+|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3588999999999 99999999999999999999998763 8999999999999999998886 4699999999
Q ss_pred Eeechh
Q 003151 203 KVDQAT 208 (844)
Q Consensus 203 ~~a~~~ 208 (844)
.|+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999753
No 111
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=130.24 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=72.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|..|| +..|.|+.++ +|+++|||||+|.+.++|..||. +|+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 468999999999999999999999999 5599999997 99999999999999999999995 79999999999998765
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=1e-14 Score=124.39 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+.. +|..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988999999999999999999999995 999999999999875
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=128.28 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE--eCCeEEEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELML 202 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~--I~Gr~L~V 202 (844)
.+|+++|||+|||+.+++++|+.+|+.||.|.++.++.. +|||||+|.+.++|..|+..|||.. |+|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 346889999999999999999999999999999999753 5899999999999999999998875 88999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.|+..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99865
No 114
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.3e-14 Score=125.99 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.|+ .+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3579999999999999999999999874 6778888789999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 90 ~~ 91 (102)
T 2fc8_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=132.38 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~---I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
...++|||+|||+.+++++|+.+|+.||. |.+|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 35789999999999999999999999998 89999999975 9999999999999999999999 8999999999999
Q ss_pred Eeechh
Q 003151 203 KVDQAT 208 (844)
Q Consensus 203 ~~a~~~ 208 (844)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988653
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=5.6e-14 Score=129.45 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=71.1
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8654
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.5e-14 Score=121.22 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=70.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEEEe
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKV 204 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~I~Gr~L~V~~ 204 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 35789999999999999999999999999999999874 589999999999999999988 99999999999998
Q ss_pred ec
Q 003151 205 DQ 206 (844)
Q Consensus 205 a~ 206 (844)
+.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=126.68 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC-----eEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QELM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G-----r~L~ 201 (844)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4789999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EEeech
Q 003151 202 LKVDQA 207 (844)
Q Consensus 202 V~~a~~ 207 (844)
|.++..
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 999865
No 119
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=4.3e-14 Score=135.97 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=74.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~---I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
..++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4789999999999999999999999999 89999999975 9999999999999999999999 99999999999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 120
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=1.5e-13 Score=137.83 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457999999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 664
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=127.90 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=73.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.| .|..|.|+.++ +|+++|||||+|.+.++|..|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999 89999999996 5999999999999999999999 589999999999998775
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 5
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.3e-14 Score=126.23 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=70.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|.++.++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999873 46999999999999999999999999999999999875
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=9.4e-14 Score=128.98 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..++|||+|||+.+++++|+.+|+.|| .|..+.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 357899999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 124
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=5.1e-14 Score=125.93 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3468999999999999999999999999988766 24889999999999999999999999999999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=122.43 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 357999999999999999999999999999999987 489999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 78 ~~ 79 (90)
T 2dnq_A 78 KN 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 126
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=138.37 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=72.8
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEE--Eee---cCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--RAQ---YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~k--i~~---d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+. ++. ...+|.++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3578999999999999999999999999998751 111 12479999999999999999999999999999999999
Q ss_pred EEEeechh
Q 003151 201 MLKVDQAT 208 (844)
Q Consensus 201 ~V~~a~~~ 208 (844)
.|.|+...
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999664
No 127
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=3.8e-14 Score=128.35 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=75.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++ +|.++|||||+|.+.++|..||. +|..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 47899999999999999999999999999999999997 99999999999999999999999 9999999999999987
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=123.82 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=70.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999996 66654 4688999999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=126.86 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999876 599999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 130
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.4e-13 Score=131.90 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=77.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999985
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.9e-13 Score=120.33 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=69.7
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4579999999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 80 ~~ 81 (92)
T 2dgt_A 80 TS 81 (92)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.2e-14 Score=130.61 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~I~Gr~L~V~ 203 (844)
.+.++|||+|||+.+++++|+.+|+.||.|.++.|+.+ +|||||+|.+.++|..||..|+ +..|+|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 35789999999999999999999999999999999876 5999999999999999999887 468999999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
|+..
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 133
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.5e-13 Score=121.91 Aligned_cols=75 Identities=16% Similarity=0.397 Sum_probs=70.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC--CeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~--Gr~L~V~~ 204 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..|+ |+.|.|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 5689999999999999999999999999999998754 589999999999999999999999999 99999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=127.99 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=69.9
Q ss_pred CCCCcEEEecCCCCC-CChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEE
Q 003151 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln--g~~I~Gr~L~ 201 (844)
..+.++|||+|||+. +++++|+.+|+.||.|.++.|+.. +|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446889999999998 999999999999999999999753 5999999999999999999885 5679999999
Q ss_pred EEeechh
Q 003151 202 LKVDQAT 208 (844)
Q Consensus 202 V~~a~~~ 208 (844)
|.|+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998653
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=6.7e-15 Score=136.71 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s--------~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G 197 (844)
.+.++|||+|||+.+++++|+.+|+.||.|.. +.|+.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999999 8999998899999999999999999999999999999999
Q ss_pred eEEEEEeechh
Q 003151 198 QELMLKVDQAT 208 (844)
Q Consensus 198 r~L~V~~a~~~ 208 (844)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999988653
No 136
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.9e-13 Score=123.14 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 35789999999999999999999999999999999764 589999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 137
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=2.9e-13 Score=122.97 Aligned_cols=74 Identities=15% Similarity=0.407 Sum_probs=69.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..|.+++ |||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 578999999999999999999999999999999863 599999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=2.6e-13 Score=131.67 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=77.2
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999998864
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=4.5e-13 Score=123.18 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=68.8
Q ss_pred CCcEEEecCCCCC-CChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~-vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+|||+. +++++|+.+|+.||.|..|.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999988 4589999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 140
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=125.27 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--cEeCCeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng--~~I~Gr~L~V~ 203 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|++ ..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999998764 59999999999999999998865 45999999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=126.86 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 45899999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.43 E-value=2.4e-13 Score=131.92 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=72.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||||||+.+++++|+.+|+.||.|.++.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5789999999999999999999999999999999876 57999999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 143
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=2.5e-13 Score=132.30 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=77.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=9.6e-14 Score=125.45 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=70.8
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeechh
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~~ 208 (844)
++|||+|||+.+++++|+.+|+.||.|.++.++.+ ++|||||+|.+.++|..|+..|||..|+|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6799999999999999999999999999999999998663
No 145
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=119.12 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=69.5
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3578999999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 79 ~~ 80 (90)
T 2dnp_A 79 TK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 146
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=3.8e-13 Score=131.79 Aligned_cols=78 Identities=22% Similarity=0.460 Sum_probs=76.0
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 789999999999999999999999999999999999889999999999999999999999999999999999999987
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=121.27 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~-ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..++|||+|||+.+++++|+.+|+.||.|..+ .++.++.+| +|||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999 588775444 4999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.4e-13 Score=118.58 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=68.9
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcC--CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~--G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
.+.++|||+|||+.+++++|+.+|+.| |.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 999998875 3799999999999999999999999999999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
|+..
T Consensus 85 ~a~~ 88 (99)
T 2cpd_A 85 LAKP 88 (99)
T ss_dssp CCCC
T ss_pred ECCC
Confidence 9865
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.1e-13 Score=122.45 Aligned_cols=75 Identities=17% Similarity=0.421 Sum_probs=69.6
Q ss_pred CCCcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 126 ~~~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
.+.++|||+|||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4689999999999 99999999999999999999984 58999999999999999999999999999999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8653
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=119.65 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|..| +.++.+|. ||||+|.+.++|..||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 55655666 99999999999999999 99999999999998764
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 81 ~ 81 (94)
T 2e5g_A 81 Q 81 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=6.3e-13 Score=133.01 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=77.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
...++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..||.. +|..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3588999999999999999999999999999999999988999999999999999999999986 999999999999988
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 653
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=128.03 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=72.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCce----eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I----~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
..++|||+|||+.+++++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 47899999999999999999999999975 68999998 5999999999999999999999996 999999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87754
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=5.9e-13 Score=117.50 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=69.1
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.| .|..+.+. +++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 567999999999999999999999999999999999975
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.6e-13 Score=118.54 Aligned_cols=74 Identities=15% Similarity=0.336 Sum_probs=67.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCc-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-cEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~-I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng-~~I~Gr~L~V~~ 204 (844)
+.++|||+|||+.+++++|+.+|+.||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5789999999999999999999999999 6655552 358999999999999999999999 999999999999
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 80 a~~ 82 (93)
T 2cqh_A 80 SVS 82 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.39 E-value=6.8e-13 Score=134.81 Aligned_cols=81 Identities=30% Similarity=0.492 Sum_probs=77.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 204 ~ 204 (216)
T 2qfj_A 204 T 204 (216)
T ss_dssp S
T ss_pred C
Confidence 5
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=1.5e-12 Score=130.36 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=78.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=1.2e-12 Score=134.21 Aligned_cols=79 Identities=18% Similarity=0.365 Sum_probs=74.5
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
..+|||+|||+.+++++|+.+|+.||.|..+.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 5789999999999999999999999999999999983 55899999999999999999999999999999999999976
Q ss_pred h
Q 003151 208 T 208 (844)
Q Consensus 208 ~ 208 (844)
.
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.2e-12 Score=115.77 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=67.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|| .+++++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5789999996 89999999999999999999884 466999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 5
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=4.6e-13 Score=127.13 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCcee--EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~--s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
..++|||+|||+.+++++|+.+|+.| .|. .|.|+.++. |+++|||||+|.+.++|.+||.. ++..|+|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 46789999999999999999999999 566 999999975 99999999999999999999985 88999999999987
Q ss_pred ech
Q 003151 205 DQA 207 (844)
Q Consensus 205 a~~ 207 (844)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 743
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=116.49 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE--eCCeEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~--I~Gr~L~V~~ 204 (844)
+.++|||||||+.+++++|+.+|+.||.|.++.|+.+ ++|||||+|.+.++|.. |+|.. +.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 5789999999999999999999999999999999874 78999999999999883 45554 5699999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8764
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=4.5e-13 Score=130.57 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 36799999999999999999999999999999999998899999999999999999999998 89999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 162
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=1.6e-13 Score=132.52 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=72.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.|| |..|.|+.++ +|+++|||||+|.+.++|..|| .||+..|+|+.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 468999999999999999999999999 7799999996 5999999999999999999999 689999999999998775
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.6e-13 Score=122.72 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=68.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~t---Gk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
..++|||+|||+.+++++|+.+|+.||.|. +.++.+..+ |.++|||||+|.+.++|..||..|+ .++|+.|.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 478999999999999999999999999999 888888766 8999999999999999999999985 4788888886
Q ss_pred eec
Q 003151 204 VDQ 206 (844)
Q Consensus 204 ~a~ 206 (844)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.4e-13 Score=123.05 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=68.9
Q ss_pred CCcEEEe--cCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe-----CCeE
Q 003151 127 PQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQE 199 (844)
Q Consensus 127 ~~~tLfV--gNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I-----~Gr~ 199 (844)
+.++||| |||++.+++++|+.+|+.||.|..+.|+.+ +|||||+|.+.++|..|+..|||..| .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 5789999 889999999999999999999999988643 58999999999999999999999998 7899
Q ss_pred EEEEeechh
Q 003151 200 LMLKVDQAT 208 (844)
Q Consensus 200 L~V~~a~~~ 208 (844)
|.|.|+...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998653
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=9e-13 Score=117.98 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=64.1
Q ss_pred CcE-EEecCCCCCCChHH----HHHhhhcC-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 128 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 128 ~~t-LfVgNLp~~vte~~----Lr~lF~~~-G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
..| |||+|||+.++.+. |+.+|+.| |.|..| +| |||||.|.+.++|.+|++.|||..|.|+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999987 66899999 499887 34 9999999999999999999999999999999
Q ss_pred EEeechh
Q 003151 202 LKVDQAT 208 (844)
Q Consensus 202 V~~a~~~ 208 (844)
|.++...
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9998764
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.5e-12 Score=130.18 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999986 8999999999999987
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
+.
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 75
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=1.9e-12 Score=126.14 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G--r~L~V~~ 204 (844)
+.++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+| +.|.|.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 46899999999999999999999999999999999998899999999999999999999999999999988 9999988
Q ss_pred e
Q 003151 205 D 205 (844)
Q Consensus 205 a 205 (844)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 168
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=7e-13 Score=123.32 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=65.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeE-----EE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~-----L~ 201 (844)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999775 89999999999999999999999999998 66
Q ss_pred EEeec
Q 003151 202 LKVDQ 206 (844)
Q Consensus 202 V~~a~ 206 (844)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65543
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.6e-12 Score=126.01 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=73.3
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
++|||+|||+.+++++|+.+|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999985 688999999999999999999999999999999999998754
No 170
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.34 E-value=4e-12 Score=116.78 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=72.6
Q ss_pred CCcEEEecCCCC-----CCChHHHHHhhhcCCceeEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 127 PQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 127 ~~~tLfVgNLp~-----~vte~~Lr~lF~~~G~I~s~ki~~d~~-tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
++++|+|.||.. .-++++|+.+|++||.|.++.|+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 578999999973 235689999999999999999999864 47899999999999999999999999999999999
Q ss_pred EEEeech
Q 003151 201 MLKVDQA 207 (844)
Q Consensus 201 ~V~~a~~ 207 (844)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999876
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.34 E-value=2.1e-12 Score=132.33 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCcEEEecCCC-CCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp-~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+||| +.+++++|+.+|+.||.|.+|+++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3699999999999999999999999999999999998
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.34 E-value=1.6e-12 Score=132.15 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=75.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=2e-12 Score=113.09 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=66.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcC----C-------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~----G-------~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~ 194 (844)
.+.++|||+|||+.+++++|+.+|+.| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999988764 599999999999999999 999999
Q ss_pred eCCeEEEEE
Q 003151 195 IDGQELMLK 203 (844)
Q Consensus 195 I~Gr~L~V~ 203 (844)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999986
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=2.6e-12 Score=126.88 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=70.4
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G--r~L~V~~ 204 (844)
...+|||+||++.+++++|+.+|+.||.|.+|.|+.. .++|||||+|.+.++|..|+..|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3578999999999999999999999999999998653 257899999999999999999999999965 9999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8653
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=2.4e-12 Score=124.82 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=74.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeE--EEEEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKV 204 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~--L~V~~ 204 (844)
..++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 3678999999999999999999999999999999999889999999999999999999999999999999975 78877
Q ss_pred e
Q 003151 205 D 205 (844)
Q Consensus 205 a 205 (844)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.33 E-value=2.1e-12 Score=126.41 Aligned_cols=79 Identities=14% Similarity=0.344 Sum_probs=74.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC---CeEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~---Gr~L~V~ 203 (844)
..++|||+|||+.+++++|+.+|+.||.|.++.++.++ +|.++|||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46899999999999999999999999999999999985 7999999999999999999999999998777 4999999
Q ss_pred eec
Q 003151 204 VDQ 206 (844)
Q Consensus 204 ~a~ 206 (844)
|++
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=4.9e-12 Score=120.50 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLK 203 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGf-gFVeF~~~e~A~~Al~~Lng~~I~G--r~L~V~ 203 (844)
....|||+||++.+++++|+.+|+.||.|.+|.++.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3567899999999999999999999999999988764 2588 9999999999999999999999998 999999
Q ss_pred eechh
Q 003151 204 VDQAT 208 (844)
Q Consensus 204 ~a~~~ 208 (844)
|+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 98654
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=1.1e-11 Score=117.37 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEe
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGf-gFVeF~~~e~A~~Al~~Lng~~I~G--r~L~V~~ 204 (844)
...|||+||++.+++++|+.+|+.||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 276 9999999999999999999999987 6899998
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8654
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.31 E-value=2.7e-12 Score=125.05 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=74.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||.. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 478999999999999999999999999999999999988999999999999999999999984 679999999999876
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=6.4e-12 Score=133.62 Aligned_cols=82 Identities=13% Similarity=0.301 Sum_probs=75.3
Q ss_pred CCCCcEEEecCCCCCCChHHHH----HhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q 003151 125 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~Lr----~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L 200 (844)
..+.++|||+|||+.+++++|+ .+|+.||.|.+|.++. +|+++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3468999999999999999966 8999999999999875 78999999999999999999999999999999999
Q ss_pred EEEeechhH
Q 003151 201 MLKVDQATR 209 (844)
Q Consensus 201 ~V~~a~~~k 209 (844)
.|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986544
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=4.6e-12 Score=124.01 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHhCCcEeC---CeEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tG--k~kGfgFVeF~~~e~A~~Al~~Lng~~I~---Gr~L~ 201 (844)
..++|||+|||+.+++++|+.+|+.||.|.++.++.++.+| .++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999999998876 67777
Q ss_pred EEeech
Q 003151 202 LKVDQA 207 (844)
Q Consensus 202 V~~a~~ 207 (844)
|.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 776643
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=5.6e-12 Score=128.10 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
..++|||+|||+.+++++|+.+|+.||.|.+|.|+.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 36899999999999999999999999999999999985 6999999999999999999999865 459999999999865
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=4.7e-12 Score=119.09 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=68.2
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|| .+++++|+.+|+.||.|.+|.+. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 5789999996 69999999999999999999985 466999999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.28 E-value=1e-11 Score=122.28 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 57899999999999999999999999988766 3589999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
+
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 5
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.2e-12 Score=112.55 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..|+. .++.+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5789999999999999999999999999999999764 67999999999999975432 2355689999998876
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=1e-11 Score=132.66 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCCcEEEecCCCCC-CChHHHHHhhhcCCceeEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q 003151 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~Lr~lF~~~G~I~s~ki~~d~~-tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V 202 (844)
..+.++|||+|||+. +++++|+.+|+.||.|..+.++.+.. ||.++|||||+|.+.++|.+|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999864 5999999999999999999999 99999999999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.|+..
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.25 E-value=1.9e-11 Score=130.17 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003151 207 A 207 (844)
Q Consensus 207 ~ 207 (844)
.
T Consensus 174 ~ 174 (284)
T 3smz_A 174 A 174 (284)
T ss_dssp G
T ss_pred C
Confidence 5
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=9.2e-12 Score=129.07 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=71.8
Q ss_pred CCcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
+.++|||+|||+ .+++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 578999999999 99999999999999999999998874 689999999999999999999999999999999988
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 108 ~~ 109 (229)
T 2adc_A 108 KH 109 (229)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.22 E-value=2.3e-11 Score=129.48 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCcEEEecCCCCCC-ChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEe
Q 003151 126 KPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (844)
Q Consensus 126 ~~~~tLfVgNLp~~v-te~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~ 204 (844)
.+.++|||+|||+.+ ++++|+.+|+.||.|.++.|+.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 899999999999999999999985 899999999999999999999999999999999999999
Q ss_pred echh
Q 003151 205 DQAT 208 (844)
Q Consensus 205 a~~~ 208 (844)
+...
T Consensus 261 a~~~ 264 (284)
T 3smz_A 261 CAPG 264 (284)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9765
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.1e-11 Score=129.90 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=70.9
Q ss_pred CCCCcEEEecCCCCCC---------ChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe
Q 003151 125 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~v---------te~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I 195 (844)
....++||||||+..+ ++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4468999999999998 78999999999999999999864 59999999999999999999999999
Q ss_pred ------------CCeEEEEEeechh
Q 003151 196 ------------DGQELMLKVDQAT 208 (844)
Q Consensus 196 ------------~Gr~L~V~~a~~~ 208 (844)
+|+.|.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.21 E-value=1.6e-11 Score=125.80 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCce--eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe----E
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 199 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I--~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr----~ 199 (844)
++.++|||+|||+.+++++|+.+|+.||.| .+++++.+. |..+|||||+|.+.++|..||..|||+.|+|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 357899999999999999999999999999 899998873 66779999999999999999999999999987 5
Q ss_pred EEEEee
Q 003151 200 LMLKVD 205 (844)
Q Consensus 200 L~V~~a 205 (844)
+.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.20 E-value=5.5e-12 Score=124.15 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+++++|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 45899999999999999999999999998877 344555689999999999999999999995 9999999999999988
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 89 ~~ 90 (175)
T 1fje_B 89 KG 90 (175)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.19 E-value=5.2e-11 Score=109.24 Aligned_cols=83 Identities=17% Similarity=0.077 Sum_probs=71.5
Q ss_pred CCCcEEEecCCCC--CCC--------hHHHHHhhhcCCceeEEEEeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCc
Q 003151 126 KPQTKVYVGKIAP--TAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 193 (844)
Q Consensus 126 ~~~~tLfVgNLp~--~vt--------e~~Lr~lF~~~G~I~s~ki~~d~~t--Gk~kGfgFVeF~~~e~A~~Al~~Lng~ 193 (844)
.|+++|.|.|+-. .+. .++|+.+|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3578999999833 333 2589999999999999999988644 468999999999999999999999999
Q ss_pred EeCCeEEEEEeechh
Q 003151 194 NIDGQELMLKVDQAT 208 (844)
Q Consensus 194 ~I~Gr~L~V~~a~~~ 208 (844)
.++|+.|.|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=4.1e-11 Score=110.73 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCcEEEecCCCCCCC-----------hHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe
Q 003151 127 PQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 127 ~~~tLfVgNLp~~vt-----------e~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I 195 (844)
+.++|+|.||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|..|+..|||..|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 578999999954432 4699999999999999965 543 3899999999999999999999999999
Q ss_pred CCeEEEEEeechh
Q 003151 196 DGQELMLKVDQAT 208 (844)
Q Consensus 196 ~Gr~L~V~~a~~~ 208 (844)
+|+.|.|.++...
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998664
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.17 E-value=7.7e-11 Score=124.63 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.+..+ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35789999999999999999999999999999998654 599999999999999999999999999999999988
Q ss_pred ch
Q 003151 206 QA 207 (844)
Q Consensus 206 ~~ 207 (844)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=2.5e-11 Score=122.08 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=71.4
Q ss_pred CcEEEecCCCC-CCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeec
Q 003151 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (844)
Q Consensus 128 ~~tLfVgNLp~-~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~ 206 (844)
.++|||+|||+ .+++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998863 6899999999999999999999999999999999986
Q ss_pred hh
Q 003151 207 AT 208 (844)
Q Consensus 207 ~~ 208 (844)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.14 E-value=8.4e-11 Score=118.27 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~L~V~ 203 (844)
++.++|||+|||+.+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999999664 2689999999999999999999999999 9999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
|+.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9865
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.13 E-value=7.9e-11 Score=125.80 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a 205 (844)
..++|||+|||+.+++.+|+.+|+.|| .|..+.++.++ .|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999985 5899999999999999999999999999999999999998
Q ss_pred chh
Q 003151 206 QAT 208 (844)
Q Consensus 206 ~~~ 208 (844)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.12 E-value=9.7e-11 Score=123.83 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCcEeC---CeEEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNID---GQELML 202 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~I~---Gr~L~V 202 (844)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||..| +|..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 59999999999999999999999999 555655 999999
Q ss_pred Eeech
Q 003151 203 KVDQA 207 (844)
Q Consensus 203 ~~a~~ 207 (844)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.12 E-value=3.2e-11 Score=110.44 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=64.7
Q ss_pred EecCCCCCCChHHHHHhh------------hcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q 003151 132 YVGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (844)
Q Consensus 132 fVgNLp~~vte~~Lr~lF------------~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~ 199 (844)
+++||++.+++.+|+.+| ++||.|.++.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 366788888887777666 999999999999885 6899999999999999999999999999999999
Q ss_pred EEEEee
Q 003151 200 LMLKVD 205 (844)
Q Consensus 200 L~V~~a 205 (844)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.11 E-value=1.4e-10 Score=108.76 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=71.0
Q ss_pred CCcEEEecCCCC--CC---ChHHHHHhhhcCCceeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 003151 127 PQTKVYVGKIAP--TA---DSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (844)
Q Consensus 127 ~~~tLfVgNLp~--~v---te~~Lr~lF~~~G~I~s~ki~~d~~----tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G 197 (844)
++++|+|.|+-. .+ -+++|+..|++||.|.+|.|+.++. ++.++|||||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999843 22 2469999999999999999998853 46788999999999999999999999999999
Q ss_pred eEEEEEeech
Q 003151 198 QELMLKVDQA 207 (844)
Q Consensus 198 r~L~V~~a~~ 207 (844)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999866
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.08 E-value=1.9e-10 Score=119.22 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCcEEEecCCCCCCChHHHHHhhhcCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q 003151 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (844)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~Lr~lF~~~G-~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~-Gr~L~V~ 203 (844)
.+.++|||+|||+.+++++|+.+|+.|| .|..+.++.. .+|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998653 3589999999999999999999999999 9999999
Q ss_pred eech
Q 003151 204 VDQA 207 (844)
Q Consensus 204 ~a~~ 207 (844)
|+.+
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9865
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.05 E-value=2.7e-10 Score=111.29 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=65.0
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcC----C-------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~----G-------~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I 195 (844)
+.++|||+|||+.+++++|+.+|+.| | .|..+.+. .++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 47899999999999999999999999 6 66666654 44699999999999999999 8999999
Q ss_pred CCeEEEEEeec
Q 003151 196 DGQELMLKVDQ 206 (844)
Q Consensus 196 ~Gr~L~V~~a~ 206 (844)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999998754
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.03 E-value=3.4e-10 Score=113.17 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=64.7
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCC-----------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-----------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G-----------~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I 195 (844)
..++|||+|||+.+++++|+.+|+.|| .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999995 4444444 556799999999999999999 7999999
Q ss_pred CCeEEEEEeech
Q 003151 196 DGQELMLKVDQA 207 (844)
Q Consensus 196 ~Gr~L~V~~a~~ 207 (844)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999988754
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.95 E-value=1.2e-09 Score=120.19 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=66.0
Q ss_pred CCCCcEEEecC--CCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC---Ce-
Q 003151 125 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 198 (844)
Q Consensus 125 ~~~~~tLfVgN--Lp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~---Gr- 198 (844)
..|..+||||| |++.+++++|+.+|+.||.|.++.+.. ++|||||+|.+.++|..||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44688999999 688999999999999999999987743 3699999999999999999999999883 44
Q ss_pred -EEEEEeech
Q 003151 199 -ELMLKVDQA 207 (844)
Q Consensus 199 -~L~V~~a~~ 207 (844)
.|.|.|...
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 577777643
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.88 E-value=7e-09 Score=96.59 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=68.2
Q ss_pred CCcEEEecCCCCCCC----------hHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 127 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 127 ~~~tLfVgNLp~~vt----------e~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
+.++|.+.|+-..-. .++|+..|++||.|.++.|..+. ++|||||+|.+.++|..|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467888888754221 13789999999999999986652 5899999999999999999999999999
Q ss_pred CeEEEEEeechhHHHHHHH
Q 003151 197 GQELMLKVDQATREYLERY 215 (844)
Q Consensus 197 Gr~L~V~~a~~~kk~le~~ 215 (844)
|+.|.|.|... ..|...|
T Consensus 82 GR~i~v~~~~~-~~y~~~f 99 (114)
T 3s6e_A 82 GKMITAAYVPL-PTYHNLF 99 (114)
T ss_dssp TEECEEEEECH-HHHHHHC
T ss_pred CEEEEEEEEcH-HHHHHhC
Confidence 99999999864 3444433
No 207
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6.6e-09 Score=94.51 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 138 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 138 ~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
..+++++|+.+|+.||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|.|.|+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 468899999999999999999987 47889999999999999999998655 6799999999765
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4e-08 Score=92.21 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=75.4
Q ss_pred CCCCcEEEecCCCCC-CChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHHHh--CCcEeCCeEE
Q 003151 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLL--NKFNIDGQEL 200 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~-~e~A~~Al~~L--ng~~I~Gr~L 200 (844)
.++++.|||+||++. ++.++|+.+|+.||.|..|.++.+. .+|||.|.+ ..+|..|+..| +|..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 446899999999999 9999999999999999999998875 369999999 89999999999 4889999998
Q ss_pred EEEeec--hhHHHHHHHHH
Q 003151 201 MLKVDQ--ATREYLERYVD 217 (844)
Q Consensus 201 ~V~~a~--~~kk~le~~k~ 217 (844)
.+.+-. .-+.|+..+.+
T Consensus 89 ~~evL~GeeE~~yw~Ki~e 107 (121)
T 1owx_A 89 TWEVLEGEVEKEALKKIIE 107 (121)
T ss_dssp EEEECCHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 888764 34677777665
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.3e-08 Score=88.77 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=62.2
Q ss_pred CCCcEEEecCCCC----CCCh----HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 003151 126 KPQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (844)
Q Consensus 126 ~~~~tLfVgNLp~----~vte----~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G 197 (844)
+|.-||+|.-.+. .+-+ .+|...|+.||.|..++++.+ .+||+|.+.++|.+||. |||+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 3567898887762 3333 479999999999999999886 38999999999999999 99999999
Q ss_pred eEEEEEeech
Q 003151 198 QELMLKVDQA 207 (844)
Q Consensus 198 r~L~V~~a~~ 207 (844)
+.|+|.++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999988653
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.5e-07 Score=83.91 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCCcEEEecCCCCC------CCh---HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe
Q 003151 125 EKPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 125 ~~~~~tLfVgNLp~~------vte---~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I 195 (844)
.+|.-||+|.-++.. ..+ ..|.+.|..||.|..++++.++ +||+|.+.++|.+||. |||+.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345789999888743 332 3688999999999999999873 9999999999999999 999999
Q ss_pred CCeEEEEEee
Q 003151 196 DGQELMLKVD 205 (844)
Q Consensus 196 ~Gr~L~V~~a 205 (844)
+|+.|+|.+-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999763
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=5.2e-07 Score=92.72 Aligned_cols=67 Identities=19% Similarity=0.075 Sum_probs=60.6
Q ss_pred ChHHHHHhhhcCCceeEEEEeecC----CCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEeech
Q 003151 141 DSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (844)
Q Consensus 141 te~~Lr~lF~~~G~I~s~ki~~d~----~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~~a~~ 207 (844)
.+++|...|++||.|.++.|+.+. .+|.++||+||+|.+.++|.+|+..|||..++||.|.|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456899999999999999998553 4558999999999999999999999999999999999999765
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.4e-05 Score=69.56 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcC-----CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~-----G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
..++|-+-|||..+++..|+.|+..+ |.|..+.++.|. |-|+|+|.+...|.+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47889999999999999999999999 999999998885 6799999999999999999999999999999
Q ss_pred EEeec
Q 003151 202 LKVDQ 206 (844)
Q Consensus 202 V~~a~ 206 (844)
|.-..
T Consensus 94 ~gTv~ 98 (117)
T 2l9w_A 94 SGTIN 98 (117)
T ss_dssp EECHH
T ss_pred ecCHH
Confidence 96443
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.00091 Score=60.63 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=64.3
Q ss_pred CCcEEEecCCCCCC-Ch----HHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 127 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~v-te----~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
-+++|+|.||+..| .. ..++.+|..|+.+.+|..... -.=..|.|.++++|.+|-..|||..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 36899999998855 22 367999999999999887654 23578999999999999999999999999999
Q ss_pred EEeechh
Q 003151 202 LKVDQAT 208 (844)
Q Consensus 202 V~~a~~~ 208 (844)
|-|++.+
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.24 E-value=0.056 Score=47.90 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=56.8
Q ss_pred cEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 129 ~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk--~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
+.|.|.+||+++|++.+...++.++.+..+..+....+.+ .-+-|||.|.+.+++..-...++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999999887777766543333 3456999999999999999999998764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.00 E-value=0.088 Score=47.08 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=45.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L 190 (844)
...++| +.|..+.-.+|..+|+.||.| .|..+-| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 445556 999999999999999999843 4556666 38999999999999999876
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.38 E-value=0.099 Score=47.24 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=56.5
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhc----C-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKV----C-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~----~-G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~ 201 (844)
-..+|.|.|||+.+.++.|.-+|.+ . |.|.+|.... +-|+|+|.+...|.+.|.. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4689999999999999999999987 2 4788887633 4689999999999999874 46788888888
Q ss_pred EE
Q 003151 202 LK 203 (844)
Q Consensus 202 V~ 203 (844)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.86 E-value=0.16 Score=47.14 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=56.3
Q ss_pred CCcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCC-eEEEEEee
Q 003151 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKVD 205 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~G-r~L~V~~a 205 (844)
..+.|.|-+.|+.. -..|...|.+||.|....... ...+-.|.|.+..+|.+||.. ||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 36788888888775 467778999999999887621 236899999999999999995 9999985 55666553
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.51 E-value=0.08 Score=47.47 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=45.0
Q ss_pred EEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003151 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (844)
Q Consensus 130 tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (844)
.++| +.|..+.-.+|..+|+.|| -..|..+-| .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4455 9999999999999999999 446666676 489999999999999999764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=90.74 E-value=0.17 Score=48.22 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=30.2
Q ss_pred EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEe
Q 003151 157 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (844)
Q Consensus 157 s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I 195 (844)
+++|+.+ .+.++|||||+|.+..+|.+|+..+++...
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 5677776 347899999999999999999988876433
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.62 E-value=0.34 Score=45.61 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=56.2
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEE-Eeec--------C----CCC-CCccEEEEEeCCHHHHHHHHHHhCCc
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK-RAQY--------P----SNG-TPKGFGFCEFESAEGVLRALRLLNKF 193 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~k-i~~d--------~----~tG-k~kGfgFVeF~~~e~A~~Al~~Lng~ 193 (844)
...|.|-+.|+... ..+...|++||.|..-. +... + ..+ ...++-.|.|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 34566667765544 56678999999987621 1110 0 000 1246779999999999999995 999
Q ss_pred EeCCeEEEEEeechhHHHHHHHHHhh
Q 003151 194 NIDGQELMLKVDQATREYLERYVDKK 219 (844)
Q Consensus 194 ~I~Gr~L~V~~a~~~kk~le~~k~kk 219 (844)
.|+|..|-|... .+..++++...+
T Consensus 85 ii~G~mIGV~Py--~~~~ve~l~~~~ 108 (132)
T 3p3d_A 85 VFNGVLLGVIPY--TKDAVERLQKRK 108 (132)
T ss_dssp EETTEECEEEEC--CHHHHHHHC---
T ss_pred EeCcEEEEEEEC--CHHHHHHHhcCC
Confidence 999986666554 455665554444
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.98 E-value=0.15 Score=48.46 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=39.3
Q ss_pred EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEEEeech
Q 003151 158 WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQA 207 (844)
Q Consensus 158 ~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~L-ng~~I~Gr~L~V~~a~~ 207 (844)
+.+..+ ..+.+|+++|+|.+.+.|.+|+..| ||..|+| .|.|.++..
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 344443 4678999999999999999999999 9999999 998876643
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.16 E-value=0.49 Score=42.28 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=51.1
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 196 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk--~kGfgFVeF~~~e~A~~Al~~Lng~~I~ 196 (844)
+-.|.|..||+++|++.+.+.++.+-.+.....+....+-+ .-+-|||.|.+.+++..-...++|+.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999988888765543323333222222 2245899999999999999999998764
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.99 E-value=0.46 Score=53.97 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=45.7
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr 198 (844)
.++|||. .|..+++.+|..+|+.||.|.++.+..+ .| .|+.|+|.+.+++..++.. .+..+.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~-~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG-THTPXXXX 116 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS-CCCCCCBC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc-cCCCcccc
Confidence 5799997 7999999999999999999999987654 23 7999999999999877654 34444333
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.62 E-value=12 Score=43.04 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred CcEEEecCCCCCCChHHHHHhhhcCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003151 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (844)
Q Consensus 128 ~~tLfVgNLp~~vte~~Lr~lF~~~G~I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Ln 191 (844)
...++|+ +|..+...+|..+|+.||. ..|.++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 8889999999999999994 46666665 479999999999999999884
No 225
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=64.11 E-value=2.4 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003151 800 KASQMLELLQTILDDEAEMFVLKM 823 (844)
Q Consensus 800 ~~~~l~~~l~~~ld~~a~~fv~~l 823 (844)
+-..||+++..+|+.+|+.||...
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345899999999999999999753
No 226
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=56.13 E-value=29 Score=30.62 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=47.5
Q ss_pred HhhhhhhhHHHHHHhhhCCchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHH-HH---HHHHHHH
Q 003151 764 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDE-AE---MFVLKMW 824 (844)
Q Consensus 764 ~~~~~~pwi~kki~e~lG~~e~--~lv~~i~~~l~~~~~~~~l~~~l~~~ld~~-a~---~fv~~lw 824 (844)
+-+.||--|.+|...+=.+-|+ .+.+||+=++....++..++.+|...+|.= .+ .||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3456788899999888555554 488999999999999999999999999943 33 5665544
No 227
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=38.22 E-value=15 Score=26.01 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.3
Q ss_pred HHHHHHhhhCCchhHHHHHHHHhhh
Q 003151 772 ISKKITEFLGEEETTLVDYIVSSTQ 796 (844)
Q Consensus 772 i~kki~e~lG~~e~~lv~~i~~~l~ 796 (844)
+..||+++||+.+=.=+|+|++.+.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4689999999988888899998875
No 228
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=33.70 E-value=6.4 Score=32.37 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003151 800 KASQMLELLQTILDDEAEMFVLKM 823 (844)
Q Consensus 800 ~~~~l~~~l~~~ld~~a~~fv~~l 823 (844)
+-..||++|..||+.+|+.||...
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445899999999999999999753
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.11 E-value=1.4e+02 Score=24.25 Aligned_cols=67 Identities=9% Similarity=0.121 Sum_probs=40.2
Q ss_pred EEEecC-CCCCCChHHHHHhhhcCCc-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q 003151 130 KVYVGK-IAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (844)
Q Consensus 130 tLfVgN-Lp~~vte~~Lr~lF~~~G~-----I~s~ki~~d~~tGk~kGfgFVeF~~~e~A~~Al~~Lng~~I~Gr~L~V~ 203 (844)
++||.. --..+...+|..++..-|. |-.+.+. + .|.||+-... .+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 566632 1235666677777775543 4445553 3 4888888764 4677888899999999999887
Q ss_pred ee
Q 003151 204 VD 205 (844)
Q Consensus 204 ~a 205 (844)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 230
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=20.19 E-value=22 Score=31.66 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=0.0
Q ss_pred CCcEEEecCCCCCCChH
Q 003151 127 PQTKVYVGKIAPTADSD 143 (844)
Q Consensus 127 ~~~tLfVgNLp~~vte~ 143 (844)
..++|||+|||+.+|++
T Consensus 96 ~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -----------------
T ss_pred CCCceEeCCCCCCcccc
Confidence 35689999999999875
Done!