BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003153
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 60 KMITSDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDND 114
K +SDPYVTV +G T RT+ I NP+W E+F + +I+ V D D
Sbjct: 34 KTGSSDPYVTVQVG-KTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 63 TSDPYVTVCLGGA--TVARTRVISNCQNPIWNEHFKIPL-AHPVSQIEFYVKDNDVFGAD 119
T DPYV + + + RTR +N NP+WNE F+ L + + +E + D + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100
Query: 120 LIGVATIPAARIKSGE 135
+G AT + +K GE
Sbjct: 101 TLGTATFTVSSMKVGE 116
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 63 TSDPYVTVCLGGA--TVARTRVISNCQNPIWNEHFKIPL-AHPVSQIEFYVKDNDVFGAD 119
T DPYV + + + RTR +N NP+WNE F+ L + + +E + D + +
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85
Query: 120 LIGVATIPAARIKSGE 135
+G AT + +K GE
Sbjct: 86 TLGTATFTVSSMKVGE 101
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 63 TSDPYVTVCLGGA--TVARTRVISNCQNPIWNEHFKIPL-AHPVSQIEFYVKDNDVFGAD 119
T DPYV + + + RTR +N NP+WNE F+ L + + +E + D + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100
Query: 120 LIGVATIPAARIKSGE 135
+G AT + +K GE
Sbjct: 101 TLGTATFTVSSMKVGE 116
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 64 SDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLA--HPVSQIEFYVKDNDVFGADLI 121
SDP+ + LG + V N NP WN+ F P+ H V ++ + +D D D +
Sbjct: 34 SDPFCLLELGNDRLQTHTVYKNL-NPEWNKVFTFPIKDIHDVLEVTVFDEDGDK-PPDFL 91
Query: 122 GVATIPAARIKSGE 135
G IP I+ G+
Sbjct: 92 GKVAIPLLSIRDGQ 105
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 64 SDPYVTV-CLGGATVA---RTRVISNCQNPIWNEHFKIPLAHPVSQ-------IEFYVKD 112
+DPYV + L GA+ + RT+ + N +NP+WNE + H +++ + V D
Sbjct: 48 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY---HGITEEDMQRKTLRISVCD 104
Query: 113 NDVFG-ADLIGVATIPAARIKSGE 135
D FG + IG ++K+ +
Sbjct: 105 EDKFGHNEFIGETRFSLKKLKANQ 128
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 64 SDPYVTV-CLGGATVA---RTRVISNCQNPIWNEHFKIPLAHPVSQ-------IEFYVKD 112
+DPYV + L GA+ + RT+ + N +NP+WNE + H +++ + V D
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY---HGITEEDMQRKTLRISVCD 106
Query: 113 NDVFG-ADLIGVATIPAARIKSGE 135
D FG + IG ++K+ +
Sbjct: 107 EDKFGHNEFIGETRFSLKKLKANQ 130
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 694 HAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMS 753
H KG+ VDD Y++L N+N R A D E + Y P + E Q+ +
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPR--AWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421
Query: 754 LWAEHMGMLDDCFREPESLE 773
L +H L++ + PE ++
Sbjct: 422 L--KHYTELEELNQYPEPVQ 439
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 64 SDPYVTVCL-----GGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKD-NDVFG 117
SDPYV V L G T +T+ I NP WNE + +I F V D N +
Sbjct: 29 SDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTR 88
Query: 118 ADLIGVATIP 127
D +G +P
Sbjct: 89 DDFLGQVDVP 98
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 63 TSDPYVTVCL----GGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYV-------- 110
T DPYV + L +T+ + +C++P ++EHF P+ Q V
Sbjct: 46 TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ 105
Query: 111 -KDNDVFGADLIGVATIPAARIKSGESISDWFPILG 145
+ + + G GV ++ + + IS W+ +LG
Sbjct: 106 SRQSGLIGCXSFGVKSL----LTPDKEISGWYYLLG 137
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 64 SDPYVTVCL-----GGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKD-NDVFG 117
SDPYV V L G T +T+ I NP WNE + ++ F V D N +
Sbjct: 41 SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTR 100
Query: 118 ADLIGVATIP 127
D +G +P
Sbjct: 101 DDFLGQVDVP 110
>pdb|3GI8|H Chain H, Crystal Structure Of Apct K158a Transporter Bound To 7f11
Monoclonal Fab Fragment
pdb|3GI9|H Chain H, Crystal Structure Of Apct Transporter Bound To 7f11
Monoclonal Fab Fragment
Length = 223
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 515 PKDVYQAELQNLVCAKNLVIDKSIQTAYIQ--AIRSAQHFIYI--ENQYFLGSSYAWP-D 569
P D Y QN L +DKS TA++Q ++ S +Y + ++ G++Y +P D
Sbjct: 53 PSDSYTNYNQNFKGKATLTVDKSSSTAFMQLSSLTSQDSAVYFCARSPHYYGTTYNYPMD 112
Query: 570 YKDAGADNTI 579
Y G T+
Sbjct: 113 YWGQGTSVTV 122
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 64 SDPYVTVCL----GGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVK-------- 111
SDPYV + L + +T+ I + NP WNE F+ L V+
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 112 DNDVFGADLIGVATIPAARIKSGESISDWFPIL 144
ND G+ G++ + A + WF +L
Sbjct: 253 RNDFMGSLSFGISELQKA------GVDGWFKLL 279
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 64 SDPYVTVCL----GGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVK-------- 111
SDPYV + L + +T+ I NP WNE F+ L V+
Sbjct: 52 SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 112 DNDVFGADLIGVATIPAARIKSGESISDWFPILG 145
ND G+ G++ + A + WF +L
Sbjct: 112 RNDFMGSLSFGISELQKA------GVDGWFKLLS 139
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTV 70
LH L ++++EAR LP P ++ R + M S+PYV +
Sbjct: 24 LHNHLTVRVIEARDLPP--------------------PISHDGSR---QDMAHSNPYVKI 60
Query: 71 CL--GGATVARTRVISNCQNPIWNEH--FKIP-LAHPVSQIEFYVKDNDVFGAD-LIGVA 124
CL +T V Q P++ E F+IP L + V D D F +IG
Sbjct: 61 CLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKV 120
Query: 125 TIPAARI 131
++P +
Sbjct: 121 SVPLCEV 127
>pdb|1FBI|H Chain H, Crystal Structure Of A Cross-Reaction Complex Between Fab
F9.13.7 And Guinea-Fowl Lysozyme
pdb|1FBI|Q Chain Q, Crystal Structure Of A Cross-Reaction Complex Between Fab
F9.13.7 And Guinea-Fowl Lysozyme
Length = 221
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 515 PKDVYQAELQNLVCAKNLVIDKSIQTAYIQ--AIRSAQHFI-YIENQYFLGSSYAWPDYK 571
P D Y + L +DKS TAY+Q ++ S + Y + Y+ G+SY DY
Sbjct: 53 PSDSYPNYNEKFKGKATLTVDKSSSTAYMQLSSLTSEDSAVYYCASLYYYGTSYGVLDYW 112
Query: 572 DAGADNTI 579
G T+
Sbjct: 113 GQGTSVTV 120
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 64 SDPYVTVCLGGA------TVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKD-NDVF 116
SDPYV + L A + +T+ I NP WNE F + ++ F V D N +
Sbjct: 42 SDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLT 101
Query: 117 GADLIGVATIPAARIKS 133
D +G +P + + +
Sbjct: 102 RDDFLGQVDVPLSHLPT 118
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 52 SKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEHFK-----IPLAHPVSQI 106
S + K DP V+V +V N NP+WNE + IPL S +
Sbjct: 15 SASNIPKTKFGKPDPIVSVIFKDEKKKTKKV-DNELNPVWNEILEFDLRGIPLDFS-SSL 72
Query: 107 EFYVKDNDVFGAD-LIGVATIPAARIKSGESISDWFPILGL 146
VKD + G + LIG AT+ + +S S + ++ L
Sbjct: 73 GIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISL 113
>pdb|1PJB|A Chain A, L-alanine Dehydrogenase
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
Length = 361
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 513 GFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKD 572
G PK++ KN + + ++ + A H ++IE Q +G+ +A DY
Sbjct: 4 GVPKEI-----------KNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQ 52
Query: 573 AGA 575
AGA
Sbjct: 53 AGA 55
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma
Length = 144
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 64 SDPYVTVCL----GGATVARTRVISNCQNPIWNEHF 95
SDPYV + L T +TR + NP+WNE F
Sbjct: 41 SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,440,631
Number of Sequences: 62578
Number of extensions: 1213672
Number of successful extensions: 2648
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2643
Number of HSP's gapped (non-prelim): 23
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)