Query 003153
Match_columns 843
No_of_seqs 511 out of 3637
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 18:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 1E-194 3E-199 1655.2 78.7 831 5-843 6-868 (868)
2 PLN02270 phospholipase D alpha 100.0 5E-183 1E-187 1562.0 73.5 791 9-843 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 4E-174 9E-179 1487.7 71.0 741 10-843 7-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 1E-153 3E-158 1308.4 58.9 763 4-843 67-853 (887)
5 PLN02866 phospholipase D 100.0 6.8E-99 1E-103 878.7 53.9 541 186-819 320-1056(1068)
6 PRK12452 cardiolipin synthetas 100.0 5.2E-45 1.1E-49 419.9 33.1 336 187-735 131-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 3.3E-44 7.1E-49 413.1 34.2 333 187-735 107-440 (483)
8 PRK11263 cardiolipin synthase 100.0 8.5E-43 1.9E-47 390.5 31.6 341 191-759 3-343 (411)
9 COG1502 Cls Phosphatidylserine 100.0 2.1E-32 4.5E-37 314.6 30.6 336 193-734 57-394 (438)
10 PHA02820 phospholipase-D-like 100.0 7.7E-32 1.7E-36 303.4 30.9 326 225-732 25-360 (424)
11 PRK09428 pssA phosphatidylseri 100.0 8.5E-31 1.8E-35 295.6 30.7 354 194-733 23-394 (451)
12 PHA03003 palmytilated EEV memb 100.0 9.5E-31 2.1E-35 291.3 29.6 318 225-733 30-347 (369)
13 cd04015 C2_plant_PLD C2 domain 99.9 4.4E-26 9.5E-31 224.0 17.2 157 8-164 2-158 (158)
14 PF12357 PLD_C: Phospholipase 99.9 1.9E-26 4.1E-31 188.2 6.2 74 762-835 1-74 (74)
15 cd04016 C2_Tollip C2 domain pr 99.8 1.3E-20 2.8E-25 176.1 14.6 118 12-163 1-121 (121)
16 cd04013 C2_SynGAP_like C2 doma 99.8 6.7E-20 1.4E-24 175.9 16.3 125 11-170 9-145 (146)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.5E-19 2.1E-23 164.6 14.2 114 15-159 2-125 (126)
18 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.8E-18 6.1E-23 161.4 15.9 119 15-165 2-121 (121)
19 cd08682 C2_Rab11-FIP_classI C2 99.8 1.7E-18 3.8E-23 164.0 13.6 117 15-162 1-126 (126)
20 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.9E-17 4.1E-22 156.9 16.3 120 12-165 3-124 (126)
21 PRK05443 polyphosphate kinase; 99.8 1E-16 2.2E-21 189.0 25.0 267 225-734 347-633 (691)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.2E-17 4.8E-22 155.1 14.3 119 15-163 2-121 (121)
23 cd04019 C2C_MCTP_PRT_plant C2 99.7 2.4E-17 5.2E-22 160.5 14.6 123 14-167 1-135 (150)
24 cd08681 C2_fungal_Inn1p-like C 99.7 1.5E-17 3.2E-22 155.7 11.9 116 13-163 1-118 (118)
25 TIGR03705 poly_P_kin polyphosp 99.7 2E-16 4.4E-21 185.2 22.5 267 225-734 338-624 (672)
26 cd04022 C2A_MCTP_PRT_plant C2 99.7 5.4E-17 1.2E-21 154.0 13.5 120 14-165 1-127 (127)
27 cd08678 C2_C21orf25-like C2 do 99.7 1.3E-16 2.8E-21 151.2 15.1 122 15-168 1-124 (126)
28 cd08378 C2B_MCTP_PRT_plant C2 99.7 7.8E-17 1.7E-21 151.4 13.0 113 15-164 2-120 (121)
29 cd08377 C2C_MCTP_PRT C2 domain 99.7 2E-16 4.4E-21 148.2 14.8 117 13-163 1-118 (119)
30 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.3E-16 5E-21 148.4 14.6 118 14-162 1-120 (121)
31 cd04044 C2A_Tricalbin-like C2 99.7 1.8E-16 3.9E-21 149.6 13.3 121 13-165 2-124 (124)
32 cd04014 C2_PKC_epsilon C2 doma 99.7 4.6E-16 9.9E-21 148.7 15.4 126 11-165 2-130 (132)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.7E-16 5.9E-21 150.4 13.4 120 14-164 1-133 (133)
34 cd08376 C2B_MCTP_PRT C2 domain 99.7 6E-16 1.3E-20 144.4 15.2 113 14-164 1-115 (116)
35 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.4E-16 7.5E-21 147.0 13.7 120 13-163 1-121 (121)
36 cd04024 C2A_Synaptotagmin-like 99.7 4.5E-16 9.7E-21 147.8 14.1 120 13-163 1-128 (128)
37 cd04036 C2_cPLA2 C2 domain pre 99.7 4.8E-16 1E-20 145.8 13.5 113 15-163 2-117 (119)
38 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 8.2E-16 1.8E-20 145.1 13.7 117 14-161 1-122 (123)
39 cd08381 C2B_PI3K_class_II C2 d 99.7 5.7E-16 1.2E-20 145.8 10.9 101 12-143 12-121 (122)
40 cd08685 C2_RGS-like C2 domain 99.6 4.2E-16 9.1E-21 145.9 9.7 102 11-143 10-119 (119)
41 cd04046 C2_Calpain C2 domain p 99.6 3.4E-15 7.4E-20 141.5 16.0 122 12-166 2-124 (126)
42 cd08375 C2_Intersectin C2 doma 99.6 2E-15 4.3E-20 144.8 14.5 114 13-163 15-135 (136)
43 cd08395 C2C_Munc13 C2 domain t 99.6 1.1E-15 2.3E-20 142.7 12.2 101 14-145 1-112 (120)
44 KOG1030 Predicted Ca2+-depende 99.6 6.8E-16 1.5E-20 147.4 10.1 98 9-137 2-100 (168)
45 cd08373 C2A_Ferlin C2 domain f 99.6 3.1E-15 6.7E-20 142.0 14.5 103 64-169 15-121 (127)
46 cd08688 C2_KIAA0528-like C2 do 99.6 9.5E-16 2.1E-20 141.6 10.7 101 15-145 1-109 (110)
47 cd08677 C2A_Synaptotagmin-13 C 99.6 9.7E-16 2.1E-20 141.2 10.5 99 12-143 13-118 (118)
48 cd04028 C2B_RIM1alpha C2 domai 99.6 1.8E-15 3.9E-20 145.8 11.9 105 12-146 28-139 (146)
49 cd04050 C2B_Synaptotagmin-like 99.6 2.4E-15 5.2E-20 137.8 11.9 99 15-146 2-103 (105)
50 cd08385 C2A_Synaptotagmin-1-5- 99.6 3.3E-15 7.1E-20 141.1 12.3 103 12-144 15-123 (124)
51 cd08382 C2_Smurf-like C2 domai 99.6 4.8E-15 1E-19 139.8 12.9 116 15-161 2-122 (123)
52 cd08387 C2A_Synaptotagmin-8 C2 99.6 3E-15 6.5E-20 141.4 11.3 103 12-144 15-123 (124)
53 cd04045 C2C_Tricalbin-like C2 99.6 4.8E-15 1E-19 139.1 12.3 104 13-147 1-105 (120)
54 cd08394 C2A_Munc13 C2 domain f 99.6 6.5E-15 1.4E-19 137.0 12.8 99 13-146 2-102 (127)
55 cd04051 C2_SRC2_like C2 domain 99.6 3.5E-15 7.5E-20 141.2 10.8 113 14-159 1-125 (125)
56 cd04027 C2B_Munc13 C2 domain s 99.6 9E-15 1.9E-19 138.8 13.5 114 14-161 2-127 (127)
57 cd04029 C2A_SLP-4_5 C2 domain 99.6 4.8E-15 1E-19 140.1 11.4 104 12-144 14-125 (125)
58 cd04043 C2_Munc13_fungal C2 do 99.6 1.7E-14 3.6E-19 136.7 15.0 115 14-166 2-123 (126)
59 cd08393 C2A_SLP-1_2 C2 domain 99.6 4.5E-15 9.7E-20 140.4 10.5 103 12-144 14-125 (125)
60 KOG3603 Predicted phospholipas 99.6 2.3E-13 5.1E-18 146.4 24.4 337 226-733 72-419 (456)
61 cd08383 C2A_RasGAP C2 domain ( 99.6 1.8E-14 3.9E-19 134.5 13.7 112 15-163 2-117 (117)
62 cd04052 C2B_Tricalbin-like C2 99.6 1.3E-14 2.8E-19 134.3 12.4 101 60-166 9-111 (111)
63 cd04017 C2D_Ferlin C2 domain f 99.6 2.8E-14 6E-19 136.9 14.8 118 14-166 2-134 (135)
64 cd04010 C2B_RasA3 C2 domain se 99.6 9.2E-15 2E-19 141.7 11.5 104 14-149 1-126 (148)
65 cd04041 C2A_fungal C2 domain f 99.6 7.9E-15 1.7E-19 135.7 10.3 99 13-144 1-107 (111)
66 cd04039 C2_PSD C2 domain prese 99.6 1.2E-14 2.6E-19 133.6 11.1 97 13-136 1-100 (108)
67 cd04040 C2D_Tricalbin-like C2 99.6 2.4E-14 5.3E-19 133.3 12.8 111 15-158 1-113 (115)
68 cd04031 C2A_RIM1alpha C2 domai 99.6 1.5E-14 3.3E-19 136.7 11.1 102 12-144 15-125 (125)
69 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-14 2.6E-19 141.2 10.6 112 14-143 1-115 (151)
70 cd04030 C2C_KIAA1228 C2 domain 99.6 1.6E-14 3.4E-19 137.1 11.1 101 13-143 16-126 (127)
71 cd08680 C2_Kibra C2 domain fou 99.6 1.2E-14 2.7E-19 136.7 10.0 102 12-143 13-124 (124)
72 cd08690 C2_Freud-1 C2 domain f 99.6 4.9E-14 1.1E-18 136.8 14.2 98 64-164 25-137 (155)
73 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.6E-14 3.4E-19 137.0 10.4 102 12-143 14-127 (128)
74 cd08521 C2A_SLP C2 domain firs 99.6 2.3E-14 5E-19 135.1 11.1 102 12-143 13-123 (123)
75 cd04049 C2_putative_Elicitor-r 99.5 3.6E-14 7.9E-19 134.0 11.8 103 13-146 1-109 (124)
76 cd08386 C2A_Synaptotagmin-7 C2 99.5 4.4E-14 9.5E-19 133.6 12.1 103 12-144 15-124 (125)
77 cd08388 C2A_Synaptotagmin-4-11 99.5 6E-14 1.3E-18 133.2 12.7 104 12-144 15-127 (128)
78 cd08407 C2B_Synaptotagmin-13 C 99.5 1.1E-14 2.4E-19 139.3 7.7 110 12-151 14-131 (138)
79 cd08676 C2A_Munc13-like C2 dom 99.5 4.7E-14 1E-18 137.2 10.9 98 12-143 27-153 (153)
80 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.7E-14 3.6E-19 138.1 7.4 107 12-150 12-126 (133)
81 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.4E-14 5.1E-19 137.6 7.6 107 12-150 14-128 (136)
82 cd08390 C2A_Synaptotagmin-15-1 99.5 9.3E-14 2E-18 130.9 11.6 103 12-144 13-122 (123)
83 cd08406 C2B_Synaptotagmin-12 C 99.5 2.7E-14 5.8E-19 136.7 7.4 107 12-150 14-128 (136)
84 cd00138 PLDc Phospholipase D. 99.5 2.1E-13 4.6E-18 136.8 14.2 145 225-443 20-169 (176)
85 cd04011 C2B_Ferlin C2 domain s 99.5 1.5E-13 3.2E-18 127.2 11.8 97 14-145 5-110 (111)
86 cd08675 C2B_RasGAP C2 domain s 99.5 1.1E-13 2.3E-18 133.0 10.8 101 15-146 1-121 (137)
87 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 7.9E-14 1.7E-18 137.7 10.1 104 11-144 25-137 (162)
88 cd08389 C2A_Synaptotagmin-14_1 99.5 1.6E-13 3.4E-18 129.6 11.4 102 12-144 15-123 (124)
89 cd08405 C2B_Synaptotagmin-7 C2 99.5 5.5E-14 1.2E-18 135.1 8.4 107 12-150 14-128 (136)
90 cd08692 C2B_Tac2-N C2 domain s 99.5 4.9E-14 1.1E-18 133.1 7.5 108 12-150 13-128 (135)
91 cd00275 C2_PLC_like C2 domain 99.5 3.6E-13 7.7E-18 127.8 13.6 116 14-163 3-127 (128)
92 cd08402 C2B_Synaptotagmin-1 C2 99.5 3.4E-14 7.3E-19 136.5 6.4 107 12-150 14-128 (136)
93 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.4E-14 1.4E-18 134.2 8.1 107 12-150 13-127 (134)
94 cd04038 C2_ArfGAP C2 domain pr 99.5 2.1E-13 4.6E-18 131.8 11.6 92 13-136 2-94 (145)
95 cd00276 C2B_Synaptotagmin C2 d 99.5 6.7E-14 1.5E-18 133.9 7.1 107 12-150 13-127 (134)
96 cd04032 C2_Perforin C2 domain 99.5 2.2E-13 4.7E-18 128.5 10.2 89 13-133 28-119 (127)
97 cd04026 C2_PKC_alpha_gamma C2 99.5 2.6E-13 5.7E-18 129.4 10.8 106 10-146 10-122 (131)
98 cd04021 C2_E3_ubiquitin_ligase 99.5 7.6E-13 1.6E-17 125.2 13.7 117 13-161 2-124 (125)
99 cd08409 C2B_Synaptotagmin-15 C 99.4 1.4E-13 3E-18 132.4 7.4 108 12-150 14-129 (137)
100 cd08691 C2_NEDL1-like C2 domai 99.4 2E-12 4.4E-17 123.6 13.9 115 14-161 2-136 (137)
101 cd04009 C2B_Munc13-like C2 dom 99.4 6.3E-13 1.4E-17 127.2 10.1 91 13-133 16-118 (133)
102 cd08410 C2B_Synaptotagmin-17 C 99.4 4.2E-13 9E-18 128.7 8.7 108 12-150 13-128 (135)
103 PHA02820 phospholipase-D-like 99.4 2.9E-12 6.3E-17 145.1 15.9 147 496-731 4-150 (424)
104 KOG1028 Ca2+-dependent phospho 99.4 1.6E-12 3.5E-17 146.9 13.7 127 12-168 166-298 (421)
105 cd08408 C2B_Synaptotagmin-14_1 99.4 3.8E-13 8.2E-18 129.3 7.1 108 12-150 14-130 (138)
106 cd04048 C2A_Copine C2 domain f 99.4 1.7E-12 3.6E-17 121.9 10.9 97 18-144 5-113 (120)
107 cd08686 C2_ABR C2 domain in th 99.4 5.1E-12 1.1E-16 116.2 12.8 80 15-130 1-92 (118)
108 cd04035 C2A_Rabphilin_Doc2 C2 99.4 2.8E-12 6.1E-17 120.9 11.4 101 12-142 14-122 (123)
109 PLN03200 cellulose synthase-in 99.4 1.2E-12 2.5E-17 166.7 11.4 119 11-165 1978-2101(2102)
110 KOG0696 Serine/threonine prote 99.4 2.1E-13 4.5E-18 145.3 3.7 104 12-146 179-289 (683)
111 cd04037 C2E_Ferlin C2 domain f 99.4 4.1E-12 9E-17 120.0 11.1 89 15-133 2-93 (124)
112 PRK13912 nuclease NucT; Provis 99.3 4.5E-11 9.8E-16 120.0 15.9 141 225-443 32-174 (177)
113 PRK13912 nuclease NucT; Provis 99.3 2.7E-11 6E-16 121.5 13.3 141 536-757 32-173 (177)
114 PHA03003 palmytilated EEV memb 99.3 1.9E-11 4.2E-16 136.7 13.5 142 227-443 217-363 (369)
115 cd00138 PLDc Phospholipase D. 99.3 2.8E-11 6E-16 121.4 13.3 131 535-733 19-152 (176)
116 PRK12452 cardiolipin synthetas 99.3 2.5E-11 5.3E-16 141.0 12.9 139 225-444 343-481 (509)
117 cd04047 C2B_Copine C2 domain s 99.2 5.6E-11 1.2E-15 109.7 10.8 89 17-136 4-103 (110)
118 KOG2059 Ras GTPase-activating 99.2 2.2E-11 4.8E-16 137.3 9.2 125 13-169 5-130 (800)
119 PF13091 PLDc_2: PLD-like doma 99.2 4.8E-11 1E-15 112.7 7.9 113 542-733 1-113 (126)
120 PLN02223 phosphoinositide phos 99.1 3.9E-10 8.4E-15 127.7 14.1 123 12-163 408-536 (537)
121 PF00168 C2: C2 domain; Inter 99.1 1.3E-10 2.8E-15 101.1 7.3 81 15-125 1-85 (85)
122 KOG1011 Neurotransmitter relea 99.1 1.2E-10 2.6E-15 129.0 7.3 118 11-162 293-422 (1283)
123 PF13091 PLDc_2: PLD-like doma 99.1 8.7E-10 1.9E-14 104.1 11.6 125 231-440 1-126 (126)
124 cd00030 C2 C2 domain. The C2 d 99.1 7.3E-10 1.6E-14 98.5 10.3 99 15-143 1-102 (102)
125 smart00239 C2 Protein kinase C 99.1 7.3E-10 1.6E-14 99.0 10.1 93 14-136 1-97 (101)
126 PLN02952 phosphoinositide phos 99.0 2E-09 4.3E-14 124.6 13.5 124 12-163 469-598 (599)
127 PLN02230 phosphoinositide phos 99.0 2.8E-09 6.2E-14 123.1 12.6 124 12-163 468-597 (598)
128 PLN02222 phosphoinositide phos 98.9 6E-09 1.3E-13 120.3 13.8 96 64-163 479-580 (581)
129 PRK01642 cls cardiolipin synth 98.9 4.9E-09 1.1E-13 121.6 13.0 139 225-445 317-456 (483)
130 KOG1028 Ca2+-dependent phospho 98.9 1E-09 2.3E-14 124.2 7.2 108 12-151 297-412 (421)
131 KOG0169 Phosphoinositide-speci 98.9 6E-09 1.3E-13 120.1 11.5 122 14-165 617-745 (746)
132 PF00614 PLDc: Phospholipase D 98.9 4.7E-10 1E-14 75.4 1.3 27 347-381 2-28 (28)
133 PLN02228 Phosphoinositide phos 98.9 1.1E-08 2.4E-13 117.7 13.2 98 64-165 458-562 (567)
134 COG5038 Ca2+-dependent lipid-b 98.9 9.3E-09 2E-13 122.7 11.8 133 13-177 436-570 (1227)
135 COG5038 Ca2+-dependent lipid-b 98.9 5.5E-09 1.2E-13 124.6 9.5 123 12-166 1039-1163(1227)
136 cd08689 C2_fungal_Pkc1p C2 dom 98.9 1E-08 2.2E-13 91.3 8.7 88 15-133 1-88 (109)
137 cd08374 C2F_Ferlin C2 domain s 98.8 1.6E-08 3.5E-13 95.7 9.5 94 15-136 2-126 (133)
138 PRK11263 cardiolipin synthase 98.8 3.2E-08 6.9E-13 112.0 12.4 135 225-441 205-340 (411)
139 KOG1264 Phospholipase C [Lipid 98.7 7.6E-08 1.7E-12 109.9 11.1 124 11-169 1063-1194(1267)
140 KOG1031 Predicted Ca2+-depende 98.7 6.2E-08 1.3E-12 106.7 9.7 130 12-174 2-146 (1169)
141 KOG3603 Predicted phospholipas 98.7 1.6E-07 3.5E-12 102.0 11.9 177 194-443 254-439 (456)
142 PRK05443 polyphosphate kinase; 98.6 4.9E-07 1.1E-11 107.7 15.5 119 540-735 351-481 (691)
143 smart00155 PLDc Phospholipase 98.6 5.6E-08 1.2E-12 66.2 3.2 25 692-716 4-28 (28)
144 PRK09428 pssA phosphatidylseri 98.5 5.8E-07 1.3E-11 102.6 12.9 137 536-733 34-178 (451)
145 KOG1328 Synaptic vesicle prote 98.3 2E-07 4.4E-12 105.5 1.7 91 12-132 946-1048(1103)
146 PF00614 PLDc: Phospholipase D 98.2 3.4E-07 7.3E-12 61.7 0.7 25 692-716 4-28 (28)
147 COG1502 Cls Phosphatidylserine 98.2 6.1E-06 1.3E-10 95.2 11.4 135 229-443 273-409 (438)
148 KOG1328 Synaptic vesicle prote 98.1 9.7E-07 2.1E-11 100.2 0.9 88 78-167 179-304 (1103)
149 cd08683 C2_C2cd3 C2 domain fou 97.9 1.1E-05 2.3E-10 74.3 4.4 83 61-143 30-143 (143)
150 KOG3964 Phosphatidylglycerolph 97.8 0.00043 9.4E-09 74.7 14.1 130 224-383 37-171 (469)
151 KOG2059 Ras GTPase-activating 97.7 5.2E-05 1.1E-09 86.9 6.8 108 63-170 150-282 (800)
152 PF07894 DUF1669: Protein of u 97.7 0.00025 5.4E-09 74.9 11.0 189 160-440 90-278 (284)
153 KOG1011 Neurotransmitter relea 97.7 0.00011 2.5E-09 82.6 8.3 101 14-145 1126-1237(1283)
154 KOG0905 Phosphoinositide 3-kin 97.6 4.2E-05 9.1E-10 91.4 4.3 104 11-144 1522-1634(1639)
155 PF13918 PLDc_3: PLD-like doma 97.6 0.00053 1.1E-08 67.7 11.0 59 539-611 84-148 (177)
156 smart00155 PLDc Phospholipase 97.5 8.4E-05 1.8E-09 50.5 2.7 24 348-379 3-26 (28)
157 PF13918 PLDc_3: PLD-like doma 97.3 0.00094 2E-08 65.9 8.7 69 211-289 71-140 (177)
158 TIGR03705 poly_P_kin polyphosp 97.2 0.0031 6.7E-08 75.3 13.8 118 540-734 342-471 (672)
159 PLN02964 phosphatidylserine de 97.2 0.00021 4.5E-09 84.3 4.0 85 64-148 68-156 (644)
160 KOG1326 Membrane-associated pr 97.2 0.0002 4.3E-09 85.1 3.2 88 13-130 613-703 (1105)
161 KOG1013 Synaptic vesicle prote 97.1 0.00057 1.2E-08 72.4 5.0 99 12-142 232-338 (362)
162 PLN02866 phospholipase D 97.0 0.002 4.4E-08 78.5 9.4 62 536-604 343-404 (1068)
163 KOG1013 Synaptic vesicle prote 96.8 0.00035 7.6E-09 73.9 0.2 93 12-134 92-193 (362)
164 KOG1265 Phospholipase C [Lipid 96.6 0.01 2.2E-07 70.0 10.1 110 11-161 701-820 (1189)
165 KOG2060 Rab3 effector RIM1 and 96.5 0.0039 8.4E-08 67.3 5.4 107 12-147 268-381 (405)
166 KOG1326 Membrane-associated pr 96.4 0.0007 1.5E-08 80.6 -0.2 155 12-203 205-370 (1105)
167 cd08684 C2A_Tac2-N C2 domain f 96.4 0.0026 5.7E-08 54.7 2.8 77 65-143 22-103 (103)
168 KOG3837 Uncharacterized conser 96.1 0.0065 1.4E-07 66.1 4.7 98 64-164 388-503 (523)
169 PF11495 Regulator_TrmB: Archa 96.0 0.029 6.3E-07 59.0 9.4 50 225-291 9-58 (233)
170 PF10358 NT-C2: N-terminal C2 95.6 0.3 6.5E-06 47.0 13.8 122 13-172 7-143 (143)
171 PF07894 DUF1669: Protein of u 95.2 0.06 1.3E-06 57.3 7.8 130 536-729 133-262 (284)
172 KOG1327 Copine [Signal transdu 95.0 0.03 6.6E-07 64.0 5.3 113 64-180 157-284 (529)
173 PF12416 DUF3668: Cep120 prote 94.5 0.4 8.7E-06 52.9 12.4 120 15-168 2-136 (340)
174 COG0855 Ppk Polyphosphate kina 94.4 3.2 7E-05 48.7 19.5 94 224-360 350-448 (696)
175 PLN03008 Phospholipase D delta 94.4 0.066 1.4E-06 64.6 6.3 94 196-289 528-633 (868)
176 PF13090 PP_kinase_C: Polyphos 94.4 4.5 9.8E-05 44.4 19.6 137 226-438 18-160 (352)
177 PLN02352 phospholipase D epsil 94.2 0.079 1.7E-06 63.6 6.4 65 225-289 452-519 (758)
178 cd08687 C2_PKN-like C2 domain 94.1 0.35 7.6E-06 42.3 8.5 84 64-163 9-92 (98)
179 COG3886 Predicted HKD family n 94.0 0.76 1.7E-05 45.7 11.6 140 225-441 38-178 (198)
180 KOG1329 Phospholipase D1 [Lipi 93.7 0.23 4.9E-06 59.9 8.9 27 349-383 701-727 (887)
181 PLN02270 phospholipase D alpha 91.7 0.32 6.8E-06 58.8 6.6 27 349-383 657-683 (808)
182 PF15627 CEP76-C2: CEP76 C2 do 90.9 2.2 4.7E-05 41.6 10.3 103 65-168 35-154 (156)
183 cd08398 C2_PI3K_class_I_alpha 90.5 0.93 2E-05 44.6 7.5 86 11-130 6-105 (158)
184 KOG1452 Predicted Rho GTPase-a 88.5 1 2.2E-05 47.9 6.3 122 8-165 46-168 (442)
185 PF15625 CC2D2AN-C2: CC2D2A N- 86.8 3 6.4E-05 41.5 8.4 69 64-132 37-107 (168)
186 cd08397 C2_PI3K_class_III C2 d 86.4 2 4.4E-05 42.3 6.8 69 62-130 28-106 (159)
187 cd08693 C2_PI3K_class_I_beta_d 85.7 3.6 7.7E-05 41.2 8.3 71 12-114 7-86 (173)
188 KOG0694 Serine/threonine prote 84.2 0.94 2E-05 53.4 3.8 96 64-168 28-125 (694)
189 cd08380 C2_PI3K_like C2 domain 84.2 2.9 6.3E-05 40.9 6.9 67 64-130 28-106 (156)
190 PF13090 PP_kinase_C: Polyphos 81.0 3.7 7.9E-05 45.1 6.6 93 582-734 51-150 (352)
191 PF14429 DOCK-C2: C2 domain in 77.7 7.6 0.00016 39.1 7.4 55 76-130 59-120 (184)
192 cd04012 C2A_PI3K_class_II C2 d 75.7 8.3 0.00018 38.4 7.0 89 11-129 6-117 (171)
193 PF00792 PI3K_C2: Phosphoinosi 75.4 18 0.00038 34.8 9.0 67 65-131 3-85 (142)
194 PF09565 RE_NgoFVII: NgoFVII r 75.2 2.9 6.2E-05 45.4 3.7 39 692-732 80-123 (296)
195 PF11618 DUF3250: Protein of u 73.5 15 0.00033 33.6 7.5 93 67-163 2-104 (107)
196 cd08399 C2_PI3K_class_I_gamma 72.8 24 0.00053 35.4 9.4 85 79-167 49-141 (178)
197 cd08695 C2_Dock-B C2 domains f 69.3 10 0.00023 38.3 5.9 53 76-128 53-111 (189)
198 COG3886 Predicted HKD family n 64.4 50 0.0011 33.3 9.3 52 536-605 38-89 (198)
199 cd08694 C2_Dock-A C2 domains f 63.8 18 0.00039 36.7 6.3 53 76-128 53-113 (196)
200 COG0855 Ppk Polyphosphate kina 62.7 32 0.00068 40.9 8.8 91 582-732 385-482 (696)
201 PF06087 Tyr-DNA_phospho: Tyro 62.3 3.5 7.6E-05 47.7 1.2 39 690-729 346-401 (443)
202 PF11495 Regulator_TrmB: Archa 60.5 27 0.00058 36.6 7.4 51 535-605 8-58 (233)
203 KOG3964 Phosphatidylglycerolph 60.3 10 0.00022 42.1 4.1 54 537-606 39-92 (469)
204 cd05137 RasGAP_CLA2_BUD2 CLA2/ 58.5 12 0.00027 42.3 4.6 49 120-170 1-50 (395)
205 KOG1327 Copine [Signal transdu 58.5 13 0.00029 43.1 4.9 84 76-162 41-130 (529)
206 cd08679 C2_DOCK180_related C2 57.8 26 0.00057 35.1 6.4 51 80-130 56-115 (178)
207 smart00142 PI3K_C2 Phosphoinos 55.8 68 0.0015 28.8 8.1 50 64-113 32-90 (100)
208 cd08696 C2_Dock-C C2 domains f 53.6 32 0.00069 34.6 6.1 39 76-114 54-95 (179)
209 PTZ00447 apical membrane antig 47.3 1.8E+02 0.0038 32.0 10.6 93 64-161 74-170 (508)
210 cd08697 C2_Dock-D C2 domains f 46.7 52 0.0011 33.2 6.4 39 76-114 56-97 (185)
211 KOG4269 Rac GTPase-activating 41.6 13 0.00028 45.2 1.4 57 10-101 756-816 (1112)
212 COG2044 Predicted peroxiredoxi 36.0 1.2E+02 0.0027 28.2 6.5 64 225-288 17-81 (120)
213 KOG3216 Diamine acetyltransfer 30.0 2E+02 0.0043 28.1 7.0 47 549-605 81-127 (163)
214 PF06219 DUF1005: Protein of u 29.0 4.5E+02 0.0097 30.0 10.5 106 64-173 36-173 (460)
215 PF06087 Tyr-DNA_phospho: Tyro 27.5 40 0.00087 39.0 2.4 35 692-729 101-139 (443)
216 PF13289 SIR2_2: SIR2-like dom 24.8 2.5E+02 0.0054 26.2 7.1 65 226-325 74-142 (143)
217 PF14924 DUF4497: Protein of u 23.0 2E+02 0.0043 26.4 5.7 58 105-165 30-105 (112)
218 PF14186 Aida_C2: Cytoskeletal 22.1 2.8E+02 0.0062 26.9 6.6 69 64-134 31-115 (147)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.2e-194 Score=1655.18 Aligned_cols=831 Identities=70% Similarity=1.202 Sum_probs=769.0
Q ss_pred CcceEEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCcc------------CcccccccCCCCCCCcEEEEEE
Q 003153 5 SETIVYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFT------------NSKKRVSHRKMITSDPYVTVCL 72 (843)
Q Consensus 5 ~~~~~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~DpYv~v~l 72 (843)
|.+++||||+|+|+|++|++||+||.++++++++|..+.+|.++.. ..|+.+++.+.+++||||+|.+
T Consensus 6 ~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~L 85 (868)
T PLN03008 6 SEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVV 85 (868)
T ss_pred ccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEE
Confidence 8899999999999999999999999999989999886655553310 1133445677889999999999
Q ss_pred CCEEEEEeeeccCCCCCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCC
Q 003153 73 GGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPK 152 (843)
Q Consensus 73 ~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~ 152 (843)
++++++||++++++.||+|||+|+|+|+|+.+.|+|+|||+|.+++++||+++||++++..|+.++.|++|++..++|.+
T Consensus 86 g~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 86 PQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPK 165 (868)
T ss_pred CCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCC
Confidence 98889999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEEEeccCCCccccCCCCCCCCCCCCCcCCccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHH
Q 003153 153 SETAVFMEMRFLPCEENPLYRYGIAANPDSFGVNNSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDIC 232 (843)
Q Consensus 153 ~~g~l~l~l~~~~~~~~~~~~~gi~~~~~~~gv~~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~ 232 (843)
.+++|+|+|+|+|+.+++.|.+|++++|++.|+|.+|||++.||+||||||||++++|+|.|.|+||+.|+|.+||++|+
T Consensus 166 ~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~ 245 (868)
T PLN03008 166 AETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDIC 245 (868)
T ss_pred CCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChH
Q 003153 233 HAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDE 312 (843)
Q Consensus 233 ~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~ 312 (843)
+||++||++|||+|||++|+++|+|++. .|.+.+.+|++||++||+|||+|+|||||+.+|+..+++++.|+|.|||+
T Consensus 246 ~AI~~Ak~~IyI~gWsl~~ei~L~R~~~--~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 246 YAISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHhhhheEEEeceeecceeEEecCCC--CCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 9999999999999999999999999976 23334689999999999999999999999999987778899999999999
Q ss_pred HHHhhhcCCCcEEEeCCCCCCCccchhhcc-----------cccccccCccceEEeccCCCCCCcceEEEeccccCCCcc
Q 003153 313 ETRKFFKHSSVHCVLSPRYASSKLSIFKQQ-----------VVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGR 381 (843)
Q Consensus 313 ~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~-----------~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 381 (843)
+++++|+|++|+|.++|++++.+.+++++. ..+++|+||||+||||+++++++|+++|||||+|||+||
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999999998888888873 456889999999999998788899999999999999999
Q ss_pred cCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 003153 382 YDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHD 461 (843)
Q Consensus 382 ~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~ 461 (843)
|||+.|++++++++.|++||+||++.++.+.|++||||+|++|+||||++|+.+|++||+.+++++.+..+.++...|.+
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~ 483 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 483 (868)
T ss_pred cCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccccccc
Confidence 99999999999999999999999988888899999999999999999999999999999999987655556667778889
Q ss_pred hhhhhhhhcccccCCCCCC--------CCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccc
Q 003153 462 DALIKLERISWILSPSSSV--------PNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLV 533 (843)
Q Consensus 462 ~~l~~~~~~~~~~~~~~~~--------p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 533 (843)
+.|+++.++++++.|+... +...+.+.+.+.+++++|.+|+|||+++|++++||..+++++.++|+||++..
T Consensus 484 d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ 563 (868)
T PLN03008 484 DALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLV 563 (868)
T ss_pred chhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccc
Confidence 9999999999998774221 11111111222367889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCC
Q 003153 534 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSS 613 (843)
Q Consensus 534 ~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~ 613 (843)
+|+||+.||++||++||||||||||||++++++|+.+.+.++.|+|+++|+++|+++++++++|+||||+|+||||++.+
T Consensus 564 ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~s 643 (868)
T PLN03008 564 VDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKS 643 (868)
T ss_pred hhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEE
Q 003153 614 ASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYV 693 (843)
Q Consensus 614 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 693 (843)
+++|+||+||++||++||.+|.++|+++|.+. +|.+||+|||||||+.... ..++.+++.+..+|++|+++|||
T Consensus 644 g~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~-~p~dyl~fy~L~~~e~~~~-----~~~~~~~~~~~~a~~~rr~~IYv 717 (868)
T PLN03008 644 GPVQEILYWQSQTMQMMYDVIAKELKAVQSDA-HPLDYLNFYCLGKREQLPD-----DMPATNGSVVSDSYNFQRFMIYV 717 (868)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CccCEEEEecccccccccC-----CCCCCCCchhhhhhhccceeEEE
Confidence 99999999999999999999999999988754 8999999999999987632 22345677788899999999999
Q ss_pred eeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHHhcCCCcccccCCcchH
Q 003153 694 HAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAEHMGMLDDCFREPESLE 773 (843)
Q Consensus 694 HsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~ 773 (843)
|||+|||||++++|||||||+|||.++||||+++.++++.++|++..+.++|+|++||++||+||||+.++.|.+|+|+|
T Consensus 718 HsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~e 797 (868)
T PLN03008 718 HAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLE 797 (868)
T ss_pred eeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHH
Confidence 99999999999999999999999999999999999999999987667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhcccCCCCcceeeCcccccCCCCccCCCCCCCCCCCCCccccccC-CCCCCCCC
Q 003153 774 CVKFVNTIAEDNWKKFTADAFTPLQGHILKYPVEVKSNGKESPLPGHETFPDVGGKVQGARS-NLPDALTT 843 (843)
Q Consensus 774 ~~~~~~~~a~~n~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~ 843 (843)
|++++|++|++||++|++|++.+|+|||+.||+.|+.||++++|||+++||||+|+|||+++ +||++|||
T Consensus 798 cv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 798 CLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=5.1e-183 Score=1562.01 Aligned_cols=791 Identities=48% Similarity=0.842 Sum_probs=722.6
Q ss_pred EEEeeEEEEEEEEeeCCCCCCCchhhhhccccccc-ccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccC-C
Q 003153 9 VYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFD-TCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISN-C 86 (843)
Q Consensus 9 ~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~-~ 86 (843)
+||||+|+|+|++|++|++++. .+.+++++..+. +|. ...+++||||+|.+++++++||+++.| .
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~y~tv~~~~a~v~rtr~~~~~~ 70 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVG------------VGKGESQLYATIDLEKARVGRTRKIENEP 70 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhcc------------CCCCCCCceEEEEeCCcEEEEEeecCCCC
Confidence 4899999999999999998654 333333333211 011 112469999999999999999999999 5
Q ss_pred CCCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEec
Q 003153 87 QNPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPC 166 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~ 166 (843)
.||+|||+|.++|+|.++.|+|+|||+|.+|+++||++.||+++|.+|+.+++||+|++.+|||.+++.+|+|+++|+++
T Consensus 71 ~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 71 KNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred CCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 69999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred cCCCccccCCCCCCCCCCCCCcCCccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEE
Q 003153 167 EENPLYRYGIAANPDSFGVNNSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVG 246 (843)
Q Consensus 167 ~~~~~~~~gi~~~~~~~gv~~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~ 246 (843)
..++.|.+|+++ +++.|+|.+|||++.||+||||||||++++|+|.|+|.+|+.|+|..||+++++||.+||++|||+|
T Consensus 151 ~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~G 229 (808)
T PLN02270 151 TKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITG 229 (808)
T ss_pred ccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEE
Confidence 999999999977 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhcCCCcEEE
Q 003153 247 WSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVHCV 326 (843)
Q Consensus 247 w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~ 326 (843)
|+|+++++|+|++.++.++ ...+|+++|++||++||+|+||+||+.++.. .++..|+|.||+++++++|++++|+|+
T Consensus 230 W~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~--~~k~~g~m~thd~~t~~~f~~~~V~~~ 306 (808)
T PLN02270 230 WSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVD--LLKKDGLMATHDEETENFFRGTDVHCI 306 (808)
T ss_pred eecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccch--hhccccccccCHHHHHHHhccCCceEE
Confidence 9999999999987655554 3579999999999999999999999987654 346679999999999999999999999
Q ss_pred eCCCCCCCccchhhcccccccccCccceEEeccCCCC---CCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCC
Q 003153 327 LSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASG---NNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHN 403 (843)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~---~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n 403 (843)
++|++|+.+.+++.+...++.+|||||+||||+++++ ++|+++|||||+|||+|||||++|++|++|++.|++||+|
T Consensus 307 L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~ 386 (808)
T PLN02270 307 LCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQ 386 (808)
T ss_pred EcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccC
Confidence 9999998887888877888999999999999997543 5899999999999999999999999999999999999999
Q ss_pred CcccC---CCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcccccccccccccccccchhhhhhhhcccccCCCCCC
Q 003153 404 PTFSA---GTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDALIKLERISWILSPSSSV 480 (843)
Q Consensus 404 ~~~~~---~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 480 (843)
|+|.+ +.++||+||||+||+|+||||++|+.+|++||+.+++.. .+..+.+++++..|+..
T Consensus 387 p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~~~~~~~~P~~~- 450 (808)
T PLN02270 387 PNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLRELEDVIIPPSP- 450 (808)
T ss_pred cccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhcccccccCCCCc-
Confidence 99874 678899999999999999999999999999999987652 23333444444333211
Q ss_pred CCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeeccc
Q 003153 481 PNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYF 560 (843)
Q Consensus 481 p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF 560 (843)
...+++.++|+||+|||++.+++++||..+++++.+|++++++..+++||+.+|++||++||||||||||||
T Consensus 451 --------~~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF 522 (808)
T PLN02270 451 --------VMFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYF 522 (808)
T ss_pred --------ccCCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhh
Confidence 111356688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcc----cCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 003153 561 LGSSYAWPDY----KDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQ 636 (843)
Q Consensus 561 ~~~~~~w~~~----~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~ 636 (843)
++++++|+.+ ++.++.|+|+++|+++|+++++++++|+||||+|+||||.+++.++|+||+||++||++||.+|++
T Consensus 523 ~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~ 602 (808)
T PLN02270 523 LGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQ 602 (808)
T ss_pred hhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999755 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCC
Q 003153 637 ELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRS 716 (843)
Q Consensus 637 ~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RS 716 (843)
+|+++|+.. +|++||+||||+|||.....+|.|...+.+++.+..+|++++++||||||+|||||++++|||||||+||
T Consensus 603 ~Lk~~g~~~-dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS 681 (808)
T PLN02270 603 ALRAKGLEE-DPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRS 681 (808)
T ss_pred HHHHcCccC-CccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEecccccccc
Confidence 999999864 8999999999999998877888887777888889999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHHhcCCCcccccCCcchHHHHHHHHHHHHhHHHhhhccc-C
Q 003153 717 LAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAEHMGMLDDCFREPESLECVKFVNTIAEDNWKKFTADAF-T 795 (843)
Q Consensus 717 m~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~-~ 795 (843)
|.|+|||||+|.+++|.++.+ +..++++|++||++||+||||+.++.|.+|+|+||+++||++|++||++|++|++ .
T Consensus 682 ~~G~rDSEIam~a~qp~~~~~--~~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~ 759 (808)
T PLN02270 682 MDGARDSEIAMGGYQPYHLST--RQPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEH 759 (808)
T ss_pred ccCCccchhhhcccCcccccc--ccchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 999999999999999987743 3467899999999999999999999999999999999999999999999999999 4
Q ss_pred CCCcceeeCcccccCCCCccCCCCCCCCCCCCCccccccC-CCCCCCCC
Q 003153 796 PLQGHILKYPVEVKSNGKESPLPGHETFPDVGGKVQGARS-NLPDALTT 843 (843)
Q Consensus 796 ~~~g~L~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~ 843 (843)
+|+|||++||+.|+.||++++|||+++||||+|+|||+++ +||++|||
T Consensus 760 ~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 760 DLPGHLLRYPIGVASEGDITELPGTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 8999999999999999999999999999999999999999 99999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=3.9e-174 Score=1487.69 Aligned_cols=741 Identities=44% Similarity=0.771 Sum_probs=662.7
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCC
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNP 89 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP 89 (843)
||||+|+++|++|+. +..+|.+..+|.. ..||||+|.+++++++|| .++.||
T Consensus 7 ~lhg~l~~~i~~~~~----------~~~~~~~~~~~~~---------------~~~~y~tv~~~~~~v~rt---~~~~~p 58 (758)
T PLN02352 7 FFHGTLEATIFDATP----------YTPPFPFNCIFLN---------------GKATYVTIKIGNKKVAKT---SHEYDR 58 (758)
T ss_pred ccccceEEEEEEeee----------hhhcccccccccC---------------CCCceEEEEeCCcEEecC---CCCCCC
Confidence 699999999999992 2233332222222 149999999999999999 677799
Q ss_pred eeeeeEEEeecCCC-ceEEEEEEeCCCCCCcceeEEEecccccccCCc-eeeEEEcccCCCCCCCCcceEEEEEEEEecc
Q 003153 90 IWNEHFKIPLAHPV-SQIEFYVKDNDVFGADLIGVATIPAARIKSGES-ISDWFPILGLYGKPPKSETAVFMEMRFLPCE 167 (843)
Q Consensus 90 ~WnE~f~~~v~~~~-~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~-~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~ 167 (843)
+|+|+|.++|+|.+ ++|+|+||| ++++||++.||+++|.+|+. +++||+|++.+|+|.+. .+|+++++|+|+.
T Consensus 59 ~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 133 (758)
T PLN02352 59 VWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAE 133 (758)
T ss_pred ccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhh
Confidence 99999999999999 789999999 58999999999999999977 99999999999999854 8999999999999
Q ss_pred CCCccccCCCCCCCCCCCCCcCCccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEE
Q 003153 168 ENPLYRYGIAANPDSFGVNNSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGW 247 (843)
Q Consensus 168 ~~~~~~~gi~~~~~~~gv~~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w 247 (843)
+++.|.+|+++ +++.|+|.+|||++.||+|+||||||++++|+|.|.| .|.+.+||++|++||++||++|||++|
T Consensus 134 ~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW 208 (758)
T PLN02352 134 LEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGW 208 (758)
T ss_pred hCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEE
Confidence 99999999987 7999999999999999999999999999999999998 566689999999999999999999999
Q ss_pred eeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhcCCCcEEEe
Q 003153 248 SVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVHCVL 327 (843)
Q Consensus 248 ~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~ 327 (843)
+|+++++|+|++.++.|.+.+.+|+++|++||++||+||||+||+.+|.. .++..|+|.+|++++.++|+|++|+|++
T Consensus 209 ~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~--~~~~~g~m~th~~~~~~~f~h~~V~~~l 286 (758)
T PLN02352 209 SFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLP--IIKNKGVMGTHDEDAFAYFKHTKVVCKL 286 (758)
T ss_pred EecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCccc--ccccccccccchHHHHhhccCCceEEee
Confidence 99999999998765544445689999999999999999999999988754 3566788999999999999999999999
Q ss_pred CCCCCCCccchhhcccccccccCccceEEeccCCCC--CCcceEEEeccccCCCcccCCCCCCccCCCCcc-ccCCCCCC
Q 003153 328 SPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASG--NNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTV-FQDDYHNP 404 (843)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~--~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~-~~~d~~n~ 404 (843)
+|++.. ..++.|+||||+||||+++++ ++|+++|||||+|||+|||||++|++++++++. |++||+|+
T Consensus 287 ~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~ 357 (758)
T PLN02352 287 CPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQT 357 (758)
T ss_pred cccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCccccccccccccccccc
Confidence 998653 346789999999999997543 578999999999999999999999999999986 56899999
Q ss_pred ccc---CCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcccccccccccccccccchhhhhhhhcccccCCCCCCC
Q 003153 405 TFS---AGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDALIKLERISWILSPSSSVP 481 (843)
Q Consensus 405 ~~~---~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p 481 (843)
.|. .+.++||+||||+||+|+||||+||++||+||||++++.. .+++..+++++..+ |
T Consensus 358 ~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~p~~~~~~~~~~----p 418 (758)
T PLN02352 358 SIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVPTSSIRNLVHQ----P 418 (758)
T ss_pred ccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccCCcccccccccC----C
Confidence 987 3678899999999999999999999999999999987642 11212222222211 1
Q ss_pred CCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccc
Q 003153 482 NDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFL 561 (843)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~ 561 (843)
. .+..+.++|+||++||++.+++.+||+. ..+|+||++||++||++||||||||||||+
T Consensus 419 ~-------~~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFi 477 (758)
T PLN02352 419 G-------SSESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFI 477 (758)
T ss_pred C-------CCcccCCcccceEEEecCccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhh
Confidence 0 0123567899999999999999888852 346899999999999999999999999999
Q ss_pred cCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003153 562 GSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSM 641 (843)
Q Consensus 562 ~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~ 641 (843)
++++.|+++++.++.|+|+++|+++|+++++++++|+||||+|+||+|.+++.++|+||+||++||++||.+|.++|+++
T Consensus 478 ss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~ 557 (758)
T PLN02352 478 GGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQES 557 (758)
T ss_pred ccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCC
Q 003153 642 QMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGR 721 (843)
Q Consensus 642 g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~r 721 (843)
|... +|+|||+|||||||+....++|.+...|.+.+.+..+|+.++++||||||+|||||++++|||||||+|||.|+|
T Consensus 558 g~~~-~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~r 636 (758)
T PLN02352 558 GEPG-HPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCR 636 (758)
T ss_pred CccC-ChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcc
Confidence 8764 899999999999999887777766666677777788889999999999999999999999999999999999999
Q ss_pred CcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHHhcCCCcccccCCcchHHHHHHHHHHHHhHHHhhhcccCCCCc-c
Q 003153 722 DTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAEHMGMLDDCFREPESLECVKFVNTIAEDNWKKFTADAFTPLQG-H 800 (843)
Q Consensus 722 DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g-~ 800 (843)
||||+|+++++++... ...+++|++||++||+||||+.++.|.+|+|+||++++|++|++||++|++|++.+|+| |
T Consensus 637 DSEia~~~~~~~~~~~---~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~h 713 (758)
T PLN02352 637 DTEIAIGCYQSKNGTN---TNNPRDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVH 713 (758)
T ss_pred cchhhhcccccccCCC---cccchHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcc
Confidence 9999999999976632 23468999999999999999999999999999999999999999999999999999999 9
Q ss_pred eeeCcccccCCCCccCC-CCCCCCCCCCCccccccC-CCCCCCCC
Q 003153 801 ILKYPVEVKSNGKESPL-PGHETFPDVGGKVQGARS-NLPDALTT 843 (843)
Q Consensus 801 L~~~p~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~-~~~~~~~~ 843 (843)
|++||+.|++||++++| ||+++||||+|+|||+++ +||++|||
T Consensus 714 l~~yp~~v~~~g~v~~l~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 714 LVNYPISVTKDGAVEDLADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred cccCCeEecCCcceeecCCCCcCCCCCCCceeccccccCCccccC
Confidence 99999999999999999 699999999999999999 99999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-153 Score=1308.38 Aligned_cols=763 Identities=47% Similarity=0.758 Sum_probs=680.2
Q ss_pred CCcceEEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCcc-----------CcccccccCCCCCCCcEEEEEE
Q 003153 4 DSETIVYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFT-----------NSKKRVSHRKMITSDPYVTVCL 72 (843)
Q Consensus 4 ~~~~~~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~DpYv~v~l 72 (843)
++..+.|+||+|+++|.++..++++..+..+.+..+.++..|..... .+++....+|..+.++|+++.+
T Consensus 67 ~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l 146 (887)
T KOG1329|consen 67 GSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVVL 146 (887)
T ss_pred cceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheeee
Confidence 57778899999999999999999888766654443333321111100 0111112455566899999999
Q ss_pred CCEEEEEeeeccCC-CCCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 73 GGATVARTRVISNC-QNPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 73 ~~~~~~rT~vi~~~-~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
....+.+|+.+.+. .+|.|.++|.+.++|....+.++|++.+..| ..++|.+++|+..+.+|..++.|+++++.++++
T Consensus 147 ~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~ 226 (887)
T KOG1329|consen 147 HKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKP 226 (887)
T ss_pred chhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCcc
Confidence 99999999999986 9999999999999999999999999999999 999999999999999999999999999999998
Q ss_pred CCCcceEEEEEEEEeccCCCccccCCCCCCCCCCCCCcCCccccCceeEEeecccCCCCCCCceeeccCc-ccchhhHHH
Q 003153 151 PKSETAVFMEMRFLPCEENPLYRYGIAANPDSFGVNNSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGI-QYKHERCWE 229 (843)
Q Consensus 151 ~~~~g~l~l~l~~~~~~~~~~~~~gi~~~~~~~gv~~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~-~y~~~~~~~ 229 (843)
......+.++++|.+...+..|..++..++++.+++.++++.+.|+.|++|+|+|+.++|.|.+.+++|+ .|.+..||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~e 306 (887)
T KOG1329|consen 227 HQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWE 306 (887)
T ss_pred ccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHH
Confidence 8777889999999999999999999999999999999999999999999999999999999999999999 888899999
Q ss_pred HHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCC
Q 003153 230 DICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQT 309 (843)
Q Consensus 230 ~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~ 309 (843)
+|++||++||++|||+|||++|+++|+|++..+ .+.||+++|++||++||+|+|||||++++... .++
T Consensus 307 di~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i~S 374 (887)
T KOG1329|consen 307 DVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------INS 374 (887)
T ss_pred HHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------cCc
Confidence 999999999999999999999999999987642 36899999999999999999999999987542 237
Q ss_pred ChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCc
Q 003153 310 HDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRL 389 (843)
Q Consensus 310 ~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l 389 (843)
+++++..++.|++|+|++||++++++. .++|+||||+||||++ +|||||+|||+|||||++|+|
T Consensus 375 ~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L 438 (887)
T KOG1329|consen 375 HYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPL 438 (887)
T ss_pred hhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccccc
Confidence 789999999999999999999876432 3689999999999998 999999999999999999999
Q ss_pred cCCCCccccCCCCCCccc-----CCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcccccccccccccccccchhh
Q 003153 390 FRDLDTVFQDDYHNPTFS-----AGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDAL 464 (843)
Q Consensus 390 ~~~~~~~~~~d~~n~~~~-----~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l 464 (843)
||+++++|++||+||+|. ++.++|||||||+||+|.||+|+||++||+||||++..++.. .++.+
T Consensus 439 ~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~----------~~~~~ 508 (887)
T KOG1329|consen 439 FDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKP----------YDDSL 508 (887)
T ss_pred cccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCC----------CCccc
Confidence 999999999999999987 688999999999999999999999999999999998765310 02222
Q ss_pred hhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHH
Q 003153 465 IKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQ 544 (843)
Q Consensus 465 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~ 544 (843)
..+.+++++..|+. ..+.+++.|++|++||++++++.+ ++.+..+|++|++...+|+||++||++
T Consensus 509 p~L~p~~~~~~~~~-----------~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~ 573 (887)
T KOG1329|consen 509 PLLLPISDITGPSE-----------PNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVK 573 (887)
T ss_pred eeecChhhhcCCCC-----------ccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHH
Confidence 22222333322211 125678899999999999988766 667778899999999999999999999
Q ss_pred HHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCC--CC--CCCChhHHHHH
Q 003153 545 AIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWP--EG--APSSASVQEIL 620 (843)
Q Consensus 545 aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~p--eg--~~~~~~~~~~~ 620 (843)
+|++||||||||||||+++++.|.. ..|.++++|+++|++|++++++|+||||+|+|| || .|.++++|+||
T Consensus 574 ~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl 648 (887)
T KOG1329|consen 574 AIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAIL 648 (887)
T ss_pred HHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHH
Confidence 9999999999999999999987753 578889999999999999999999999999999 99 88899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEE
Q 003153 621 YWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVV 700 (843)
Q Consensus 621 ~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIV 700 (843)
+||+|||+|||++|+++|++.|++-.+|.+|++|||++++++. +++.++||||||||+|||
T Consensus 649 ~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~-------------------~~~~~~emIYVHsK~mIv 709 (887)
T KOG1329|consen 649 HWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQ-------------------AQRLRREMIYVHSKLMIV 709 (887)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccc-------------------cccceEEEEEEeeeeEEe
Confidence 9999999999999999999999975588999999999988641 245678999999999999
Q ss_pred eeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHHhcCCCcccccCCcchHHHHHHHH
Q 003153 701 DDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAEHMGMLDDCFREPESLECVKFVNT 780 (843)
Q Consensus 701 DD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~ 780 (843)
||+++||||||||+|||.|+|||||||+++|++++++..+..+.+|+++|||+||+||||+.++.|++|++.+|.+.++.
T Consensus 710 DD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d 789 (887)
T KOG1329|consen 710 DDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRD 789 (887)
T ss_pred cCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHH
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhcccCCCCcceeeCcccccCCCCccCCCCCCCCCCCCCccccccC-CCCCCCCC
Q 003153 781 IAEDNWKKFTADAFTPLQGHILKYPVEVKSNGKESPLPGHETFPDVGGKVQGARS-NLPDALTT 843 (843)
Q Consensus 781 ~a~~n~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~ 843 (843)
+.+++|..|+++....++|||+.||+++..+|++.++||.++|||+++++.|.++ .+|++||+
T Consensus 790 ~~~~~W~~~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 790 LFEDLWQRYAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred HHHHHHHHHHhhhhhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999 99999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=6.8e-99 Score=878.73 Aligned_cols=541 Identities=31% Similarity=0.496 Sum_probs=411.3
Q ss_pred CCcCCccc----cCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCC
Q 003153 186 NNSYFPVR----NGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTK 261 (843)
Q Consensus 186 ~~s~~p~~----~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~ 261 (843)
..+|.|++ .||.+++|+|| +++|++|++||++||++|+|++|||+|+++|+|++.
T Consensus 320 F~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~- 378 (1068)
T PLN02866 320 FGSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH- 378 (1068)
T ss_pred CCCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC-
Confidence 36778888 68999999997 788999999999999999999999999999998532
Q ss_pred CCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhh--cCCCcEEEeCCCCCCCccchh
Q 003153 262 PLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFF--KHSSVHCVLSPRYASSKLSIF 339 (843)
Q Consensus 262 ~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l--~~~~v~v~~~~~~~~~~~~~~ 339 (843)
++.+.+|+++|++||++||+||||+||+.++... +. ...+.+.+ .++||+|..+|....
T Consensus 379 ---D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~--~~--------S~~~k~~L~~lh~gI~V~r~P~~~~------ 439 (1068)
T PLN02866 379 ---DHESSRLDSLLEAKAKQGVQIYILLYKEVALALK--IN--------SVYSKRRLLGIHENVKVLRYPDHFS------ 439 (1068)
T ss_pred ---CchHHHHHHHHHHHHHCCCEEEEEEECccccccc--cC--------chhhHHHHHHhCCCeEEEecCcccc------
Confidence 1246899999999999999999999998753211 11 11222222 378999875543211
Q ss_pred hcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCcc-ccCCCCCCccc-----------
Q 003153 340 KQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTV-FQDDYHNPTFS----------- 407 (843)
Q Consensus 340 ~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~-~~~d~~n~~~~----------- 407 (843)
....+|+||||+||||++ +||+||+|||.|||||++|++.|....+ .++||.||+..
T Consensus 440 ---~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d 508 (1068)
T PLN02866 440 ---SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKD 508 (1068)
T ss_pred ---cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccc
Confidence 123578999999999998 9999999999999999999998865544 45799998753
Q ss_pred --CCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhccccccc-ccccc--------ccccc-------------c--
Q 003153 408 --AGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFG-QRFKR--------VTRWH-------------D-- 461 (843)
Q Consensus 408 --~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~-~~~~~--------~~~~~-------------~-- 461 (843)
++...|||||||+||+|+||||+||+++|++|||.+++.+... ....- .++.. .
T Consensus 509 ~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~ 588 (1068)
T PLN02866 509 ELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDN 588 (1068)
T ss_pred ccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccccccccccccc
Confidence 3567789999999999999999999999999999987753100 00000 00000 0
Q ss_pred -------hhh---hhhhhcccccCCCCCC--------------------CC--CC-------CC-CC-------------
Q 003153 462 -------DAL---IKLERISWILSPSSSV--------------------PN--DH-------PK-LW------------- 488 (843)
Q Consensus 462 -------~~l---~~~~~~~~~~~~~~~~--------------------p~--~~-------~~-~~------------- 488 (843)
+.+ .....+|.+++++..- |. .. +. +.
T Consensus 589 ~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 668 (1068)
T PLN02866 589 QKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLS 668 (1068)
T ss_pred cccccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0001122222221000 00 00 00 00
Q ss_pred --------------------------------cccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhh
Q 003153 489 --------------------------------VSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDK 536 (843)
Q Consensus 489 --------------------------------~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~ 536 (843)
.......++|.+||+||++.||+.. ..+|+
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~------------------~~~E~ 730 (1068)
T PLN02866 669 VKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT------------------SQVEE 730 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC------------------CchHH
Confidence 0001123568999999998776522 12589
Q ss_pred HHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCC--C-CC--
Q 003153 537 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPE--G-AP-- 611 (843)
Q Consensus 537 sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~pe--g-~~-- 611 (843)
||++||+++|++|+||||||||||++++.. +..+.|+|+.+|+.+|++|++++++|+||||||++|+ | .+
T Consensus 731 SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~ 805 (1068)
T PLN02866 731 SIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDG 805 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCc
Confidence 999999999999999999999999987532 3467999999999999999999999999999999996 4 33
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeE
Q 003153 612 SSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMI 691 (843)
Q Consensus 612 ~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 691 (843)
.+.++++||+||++||++++.+|+++|+++.. .+|.|||+|||||+++.+... .+ ..+++|
T Consensus 806 ~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g--~~p~dYisf~~LRn~~~l~~~-----------~~------~vteqI 866 (1068)
T PLN02866 806 GAASVRAIMHWQYRTICRGKNSILHNLYDLLG--PKTHDYISFYGLRAYGRLFEG-----------GP------LATSQI 866 (1068)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHHhC--CCHHHeEeeecccccccccCC-----------Cc------ccceee
Confidence 34689999999999999999999999998532 279999999999998765211 01 124689
Q ss_pred EEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCC---CCCCchHHHHHHHHHHHhcCCCcc---c
Q 003153 692 YVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKK---EHPHGQVYGYRMSLWAEHMGMLDD---C 765 (843)
Q Consensus 692 yvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~---~~~~~~~~~lR~~Lw~ehlG~~~~---~ 765 (843)
|||||+|||||++++|||||||+|||.|+|||||+++++|++.+..... -.+++++++||++||+||||+..+ .
T Consensus 867 YVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~ 946 (1068)
T PLN02866 867 YVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDK 946 (1068)
T ss_pred EEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhc
Confidence 9999999999999999999999999999999999999999987643222 244578999999999999998753 4
Q ss_pred ccCCcchHHHH-HHHHHHHHhHHHhh------------------------------------------------------
Q 003153 766 FREPESLECVK-FVNTIAEDNWKKFT------------------------------------------------------ 790 (843)
Q Consensus 766 ~~~p~~~~~~~-~~~~~a~~n~~~~~------------------------------------------------------ 790 (843)
+.||.+.++++ .|+.+|..|...|.
T Consensus 947 ~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~ 1026 (1068)
T PLN02866 947 IIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSD 1026 (1068)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhh
Confidence 78999999996 58999999875541
Q ss_pred -hcccCCCCcceeeCcccccCCCCccCCCC
Q 003153 791 -ADAFTPLQGHILKYPVEVKSNGKESPLPG 819 (843)
Q Consensus 791 -~~~~~~~~g~L~~~p~~~~~~~~~~~~~~ 819 (843)
.++++.++||||.||+.|++++.+.|.-+
T Consensus 1027 ~~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 1027 PMERLKSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred HHHHHhhceEEEEechhhhhhhccCCCCcC
Confidence 02367899999999999999997665444
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=5.2e-45 Score=419.92 Aligned_cols=336 Identities=24% Similarity=0.299 Sum_probs=244.1
Q ss_pred CcCCccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCC
Q 003153 187 NSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSG 266 (843)
Q Consensus 187 ~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~ 266 (843)
.+.+|...||++++|.|| ++.|+++.++|++||++|+|+.|.+.++ .
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d-------~------ 177 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSD-------E------ 177 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCC-------c------
Confidence 355889999999999997 7899999999999999999999877542 1
Q ss_pred CcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccc
Q 003153 267 GNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGT 346 (843)
Q Consensus 267 ~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 346 (843)
.+..+.++|.+||+|||+||||+ |+.+|... .....+.|+++||+|..+.+... .+ .....
T Consensus 178 ~g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~---~~~~~ 238 (509)
T PRK12452 178 IGTKVRDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AW---LLETV 238 (509)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---cc---ccccc
Confidence 35799999999999999999996 99877421 23566778899999975432211 01 12245
Q ss_pred cccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeC
Q 003153 347 LFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEG 426 (843)
Q Consensus 347 ~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G 426 (843)
+++||+|++|||++ +||+||+|+.+ .|.... ....+|||+|++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 78999999999999 99999999998 554321 123689999999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecc
Q 003153 427 PAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSI 506 (843)
Q Consensus 427 paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~ 506 (843)
|+|.++...|.++|+.+++... . ..|. .. ..+ ...|. . ....+...+|++.+-
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~-----~--~~~~--------~~---~~~-~~~~~----~----~~~~~~~~~q~~~sg 337 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN-----T--YSWD--------PF---MNR-QYFPG----K----EISNAEGAVQIVASG 337 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc-----c--cccc--------cc---cch-hcCCC----c----cccCCCeEEEEEeCC
Confidence 9999999999999998764310 0 0000 00 000 00010 0 001234568888763
Q ss_pred cCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHH
Q 003153 507 DSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALK 586 (843)
Q Consensus 507 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ 586 (843)
|.. .+.+|.++|+++|.+||++|||++|||++. ..+..+
T Consensus 338 --------p~~----------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd-----------------~~l~~a 376 (509)
T PRK12452 338 --------PSS----------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPD-----------------QETLTL 376 (509)
T ss_pred --------CCc----------------hhHHHHHHHHHHHHHhhhEEEEECCccCCC-----------------HHHHHH
Confidence 211 146899999999999999999999999942 245555
Q ss_pred HHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCC
Q 003153 587 IASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQG 666 (843)
Q Consensus 587 ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~ 666 (843)
+..|.+ +||+|+|++|..+ +.. +.++..++ .++.|.++|+++ |
T Consensus 377 L~~Aa~--rGV~Vrii~p~~~----D~~----~~~~a~~~-------~~~~L~~aGv~I---------~----------- 419 (509)
T PRK12452 377 LRLSAI--SGIDVRILYPGKS----DSI----ISDQASQS-------YFTPLLKAGASI---------Y----------- 419 (509)
T ss_pred HHHHHH--cCCEEEEEcCCCC----ChH----HHHHHHHH-------HHHHHHHcCCEE---------E-----------
Confidence 555544 5599999999533 322 22343333 367888999875 2
Q ss_pred CCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcc
Q 003153 667 EPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHT 735 (843)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~ 735 (843)
+|. +.++|+|+|||||++++|||+|||.||+. .+.|+++.+++++.+
T Consensus 420 ~y~--------------------~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 420 SYK--------------------DGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred Eec--------------------CCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 122 23799999999999999999999999998 459999999987543
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.3e-44 Score=413.13 Aligned_cols=333 Identities=22% Similarity=0.305 Sum_probs=242.9
Q ss_pred CcCCccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCC
Q 003153 187 NSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSG 266 (843)
Q Consensus 187 ~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~ 266 (843)
.+.+|...||+|++|.|| +++|++++++|++||++|+|+.|.+.+ +.
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d~------ 153 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------DG------ 153 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------CC------
Confidence 355789999999999997 789999999999999999999987653 21
Q ss_pred CcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhcCCCcEEEeC-CCCCCCccchhhccccc
Q 003153 267 GNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVHCVLS-PRYASSKLSIFKQQVVG 345 (843)
Q Consensus 267 ~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~-~~~~~~~~~~~~~~~~~ 345 (843)
.+.++.++|.+||+|||+||||+ |+.++... ......+.|++.||+|..+ |.... .+ ....
T Consensus 154 ~g~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~~---~~---~~~~ 215 (483)
T PRK01642 154 LGDQVAEALIAAAKRGVRVRLLY-DSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNLG---RV---FRRR 215 (483)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCcc---cc---cccc
Confidence 35799999999999999999995 99876431 1223566788899998865 32111 11 1124
Q ss_pred ccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeee
Q 003153 346 TLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIE 425 (843)
Q Consensus 346 ~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~ 425 (843)
.++++|+|++|||++ +||+||+|+++..|.+.. ....+|||+|++++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~-------------------------~~~~~w~D~~~~i~ 262 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQD-------------------------PGVGQWRDTHVRIE 262 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCCC-------------------------CCCCCcEEEEEEEE
Confidence 567999999999998 999999999994443211 12358999999999
Q ss_pred ChHHHHHHHHHHHHHhhhcccccccccccccccccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEec
Q 003153 426 GPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRS 505 (843)
Q Consensus 426 Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs 505 (843)
||+|.++...|.++|+.+++... ... . +....++ ....+...+|++.+
T Consensus 263 Gp~v~~l~~~F~~dW~~~~~~~~---------------~~~---~-----~~~~~~~---------~~~~~~~~~qi~~s 310 (483)
T PRK01642 263 GPVVTALQLIFAEDWEWETGERI---------------LPP---P-----PDVLIMP---------FEEASGHTVQVIAS 310 (483)
T ss_pred cHHHHHHHHHHHHHHHHHhCccc---------------CCC---C-----cccccCC---------ccCCCCceEEEEeC
Confidence 99999999999999998765310 000 0 0000000 01122346888865
Q ss_pred ccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHH
Q 003153 506 IDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELAL 585 (843)
Q Consensus 506 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~ 585 (843)
- |.. .+.+++++|+++|.+||++|||++|||++. ..+..
T Consensus 311 g--------P~~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~-----------------~~i~~ 349 (483)
T PRK01642 311 G--------PGD----------------PEETIHQFLLTAIYSARERLWITTPYFVPD-----------------EDLLA 349 (483)
T ss_pred C--------CCC----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCC-----------------HHHHH
Confidence 3 221 136799999999999999999999999942 24556
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCC
Q 003153 586 KIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQ 665 (843)
Q Consensus 586 ~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~ 665 (843)
++..|.+ +||+|+||+|..++ .. +.++..++ .++.|.++|+++ |.
T Consensus 350 aL~~Aa~--rGV~Vril~p~~~d----~~----~~~~~~~~-------~~~~L~~~Gv~I---------~~--------- 394 (483)
T PRK01642 350 ALKTAAL--RGVDVRIIIPSKND----SL----LVFWASRA-------FFTELLEAGVKI---------YR--------- 394 (483)
T ss_pred HHHHHHH--cCCEEEEEeCCCCC----cH----HHHHHHHH-------HHHHHHHcCCEE---------EE---------
Confidence 6666644 55999999996542 22 23344333 256788889865 21
Q ss_pred CCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcc
Q 003153 666 GEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHT 735 (843)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~ 735 (843)
|.+ .++|||+|||||++++|||+|||.||+. .|.|+++.++|++.+
T Consensus 395 --y~~--------------------~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 395 --YEG--------------------GLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred --eCC--------------------CceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 221 2799999999999999999999999998 459999999987543
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=8.5e-43 Score=390.54 Aligned_cols=341 Identities=18% Similarity=0.249 Sum_probs=240.9
Q ss_pred ccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcch
Q 003153 191 PVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLS 270 (843)
Q Consensus 191 p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~ 270 (843)
+.+.||+|+++.|| +++|.+++++|++||++|+|+.|.|.++ . .+..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-------~------~g~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-------K------VGKQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-------c------hHHH
Confidence 57889999999997 7899999999999999999999987542 1 3478
Q ss_pred HHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccC
Q 003153 271 LGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTH 350 (843)
Q Consensus 271 l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~sh 350 (843)
|.++|.+||+|||+||||+ |..++... .....+.|.+.||++..+.+.+. ++ ......+.++
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~----~~-~~~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR----LL-GMRTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc----cc-ccccccccCC
Confidence 9999999999999999996 88765421 23556778899999875432210 10 0111223589
Q ss_pred ccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHH
Q 003153 351 HQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAY 430 (843)
Q Consensus 351 HqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~ 430 (843)
|+|++|||++ +||+||+|+++.++.. ....+|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999998 9999999999733310 0124799999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCC
Q 003153 431 DVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGS 510 (843)
Q Consensus 431 dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~ 510 (843)
++...|.+.|....... ..|.. . + ..+. ....+...+|++.+-
T Consensus 157 ~l~~~f~~~w~~~~~~~---------~~~~~--------~-----~--~~~~---------~~~~g~~~~~~v~~~---- 199 (411)
T PRK11263 157 DIHQFELEALPGQSAAR---------RWWRR--------H-----H--RAEE---------NRQPGEAQALLVWRD---- 199 (411)
T ss_pred HHHHHHHHHHhhcccch---------hhhcc--------c-----c--cCcc---------cCCCCCeEEEEEECC----
Confidence 99999999997432110 00000 0 0 0000 011233456666431
Q ss_pred CCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHH
Q 003153 511 VKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASK 590 (843)
Q Consensus 511 ~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a 590 (843)
|.. ....|+.+|+.+|.+||+.|||+|+||++. ..+..+|..|
T Consensus 200 ----p~~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~-----------------~~l~~aL~~A 242 (411)
T PRK11263 200 ----NEE----------------HRDDIERHYLKALRQARREVIIANAYFFPG-----------------YRLLRALRNA 242 (411)
T ss_pred ----Ccc----------------hHHHHHHHHHHHHHHhceEEEEEecCcCCC-----------------HHHHHHHHHH
Confidence 110 136799999999999999999999999842 2455566666
Q ss_pred HHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCC
Q 003153 591 IRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGL 670 (843)
Q Consensus 591 ~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~ 670 (843)
.+ +||+|+||+|.. ++.. +..+..+ .++..|.++|+++ |. |.+
T Consensus 243 a~--RGV~V~ii~~~~----~d~~----~~~~a~~-------~~~~~Ll~~Gv~I---------~~-----------y~~ 285 (411)
T PRK11263 243 AR--RGVRVRLILQGE----PDMP----IVRVGAR-------LLYNYLLKGGVQI---------YE-----------YCR 285 (411)
T ss_pred HH--CCCEEEEEeCCC----CCcH----HHHHHHH-------HHHHHHHHCCCEE---------EE-----------ecC
Confidence 54 559999999953 3332 2223322 2367888999865 21 221
Q ss_pred CCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCCCCCCchHHHH
Q 003153 671 NNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGY 750 (843)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~l 750 (843)
.++|+|+|||||++++|||+|||.|||. .|.|+++.++|++++ +++...
T Consensus 286 --------------------~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a---------~~l~~~ 334 (411)
T PRK11263 286 --------------------RPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN---------QTLRDN 334 (411)
T ss_pred --------------------CCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH---------HHHHHH
Confidence 2699999999999999999999999997 559999999998654 234455
Q ss_pred HHHHHHHhc
Q 003153 751 RMSLWAEHM 759 (843)
Q Consensus 751 R~~Lw~ehl 759 (843)
..+++++|.
T Consensus 335 ~~~~~~~~s 343 (411)
T PRK11263 335 LNGLIAADC 343 (411)
T ss_pred HHHHHHhhC
Confidence 566666554
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=2.1e-32 Score=314.59 Aligned_cols=336 Identities=25% Similarity=0.330 Sum_probs=228.9
Q ss_pred ccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHH
Q 003153 193 RNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLG 272 (843)
Q Consensus 193 ~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~ 272 (843)
..++.++++.++ .+.|.++.++|++|+++|++..+.+.+ +. .+..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d~------~~~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------DE------LGREIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------Ch------hHHHHH
Confidence 688889999886 788999999999999999998876543 21 357999
Q ss_pred HHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhcCCCc-EEEeC-CCCCCCccchhhcccccccccC
Q 003153 273 DLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSV-HCVLS-PRYASSKLSIFKQQVVGTLFTH 350 (843)
Q Consensus 273 ~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v-~v~~~-~~~~~~~~~~~~~~~~~~~~sh 350 (843)
++|.++|++||+||+|+ |+.++... ........++++++ .+... |..+. . ......+.++
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~-~-----~~~~~~~~r~ 165 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPR-P-----LRFRRLNRRL 165 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCcccc-c-----chhhhhhccc
Confidence 99999999999999997 87765221 12345677888898 55543 22210 0 0122346789
Q ss_pred ccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHH
Q 003153 351 HQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAY 430 (843)
Q Consensus 351 HqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~ 430 (843)
|+|++|||++ ++|+||.|+.+.++.... ...+|+|.+++++||++.
T Consensus 166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~~--------------------------~~~~~~D~~~~~~g~~v~ 211 (438)
T COG1502 166 HRKIVVIDGK--------VAFVGGANIGDEYFHKDK--------------------------GLGYWRDLHVRITGPAVA 211 (438)
T ss_pred cceEEEEcCC--------EEEecCcccchhhhccCc--------------------------CcccceeeeEEEECHHHH
Confidence 9999999998 999999999985553210 124899999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCC
Q 003153 431 DVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGS 510 (843)
Q Consensus 431 dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~ 510 (843)
++..+|.++|+....... .+... ..+ ..+.. . . ........+|++.+.+..
T Consensus 212 ~l~~~f~~~w~~~~~~~~-----------------~~~~~---~~~--~~~~~--~--~--~~~~~~~~~~~~~~~P~~- 262 (438)
T COG1502 212 DLARLFIQDWNLESGSSK-----------------PLLAL---VRP--PLQSL--S--L--LPVGRGSTVQVLSSGPDK- 262 (438)
T ss_pred HHHHHHHHHhhhccCcCc-----------------ccccc---ccc--ccccc--c--c--cccccCcceEEEecCCcc-
Confidence 999999999998643310 00000 000 00000 0 0 001112225777654211
Q ss_pred CCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHH
Q 003153 511 VKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASK 590 (843)
Q Consensus 511 ~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a 590 (843)
..+. ....+...|+.+|.+|+++|+|++|||++. .++..++..+
T Consensus 263 --~~~~-----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~-----------------~~~~~al~~a 306 (438)
T COG1502 263 --GLGS-----------------ELIELNRLLLKAINSARESILIATPYFVPD-----------------RELLAALKAA 306 (438)
T ss_pred --ccch-----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCC-----------------HHHHHHHHHH
Confidence 1010 011255899999999999999999999953 3555666666
Q ss_pred HHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCC
Q 003153 591 IRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGL 670 (843)
Q Consensus 591 ~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~ 670 (843)
.+ +|++|+|++|.. +.++.. +.++..+ ..+..|.+.|+.+ |. |.+
T Consensus 307 ~~--~Gv~V~ii~~~~--~~~d~~----~~~~~~~-------~~~~~l~~~gv~i---------~~-----------~~~ 351 (438)
T COG1502 307 AR--RGVDVRIIIPSL--GANDSA----IVHAAYR-------AYLKELLEAGVKV---------YE-----------YPG 351 (438)
T ss_pred Hh--cCCEEEEEeCCC--CCCChH----HHHHHHH-------HHHHHHHHhCCEE---------EE-----------ecC
Confidence 44 559999999953 222222 2223322 2366777888754 22 221
Q ss_pred CCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 671 NNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
..++|+|+|||||++++|||+|||.||+.. |+|++++|+|+.+
T Consensus 352 -------------------g~~lH~K~~iiD~~~~~vGS~N~~~rS~~l--N~E~~~~i~d~~~ 394 (438)
T COG1502 352 -------------------GAFLHSKVMIIDDRTVLVGSANLDPRSLRL--NFEVGLVIEDPEL 394 (438)
T ss_pred -------------------CCcceeeEEEEcCCEEEEeCCcCCHhHHHH--hhhheeEEeCHHH
Confidence 038999999999999999999999999985 4999999998743
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=7.7e-32 Score=303.43 Aligned_cols=326 Identities=17% Similarity=0.203 Sum_probs=206.5
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
...++.+.++|.+||++|+|+.+.|.+. +.. . ...+.++.++|.+||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~-----d~~-~--~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLS-----DEV-G--TNFGTMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecC-----ccc-c--chhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 3578899999999999999998876531 110 0 0024789999999999999999996 75321
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
.....+.|+.+||++..+.... ....++|+|++|||++ ++|+||+|+.+ |+.+
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 0122356788999987553211 0124699999999998 99999999977 6632
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeee--eChHHHHHHHHHHHHHhhhcccccccccccccccccch
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKI--EGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDD 462 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v--~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 462 (843)
..+|+++.+ +||+|.++.+.|.+.|+..++.. ...|...
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--------~~~~~~~ 180 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--------PYNWKNF 180 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--------CCccccc
Confidence 123677776 79999999999999999765321 0011100
Q ss_pred hhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHH
Q 003153 463 ALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAY 542 (843)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ay 542 (843)
++. ..+...+.. ....+....+++.+. |... ++. ......++|
T Consensus 181 -------~~~------~~~~~~p~~----~~~~~~~~~~~~sss--------P~~~---------~~~---~r~~~~~~~ 223 (424)
T PHA02820 181 -------YPL------YYNTDHPLS----LNVSGVPHSVFIASA--------PQQL---------CTM---ERTNDLTAL 223 (424)
T ss_pred -------ccc------ccccCCCcc----cccCCccceEEEeCC--------Chhh---------cCC---CCCchHHHH
Confidence 000 000000000 000111112333322 1100 000 012357899
Q ss_pred HHHHHhccceEEEeecccccCCC-------CCCcccCCCCCCccHHHHHHHHHH-HHHhcCCcEEEEEecCCCCCCCCCh
Q 003153 543 IQAIRSAQHFIYIENQYFLGSSY-------AWPDYKDAGADNTIPMELALKIAS-KIRAKERFAVYVVMPMWPEGAPSSA 614 (843)
Q Consensus 543 l~aI~~Ak~~IYIEnQyF~~~~~-------~w~~~~~~~~~n~i~~~~a~~ia~-a~~~~~~~~V~IVlP~~peg~~~~~ 614 (843)
+++|.+||++|||+++||++..+ .|| .+..+|.+ |+ .+||+|+|++|.|+.. .
T Consensus 224 l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA~--~RGV~VriLvp~~~d~----~ 284 (424)
T PHA02820 224 LSCIRNASKFVYVSVMNFIPIIYSKAGKILFWP-------------YIEDELRRAAI--DRKVSVKLLISCWQRS----S 284 (424)
T ss_pred HHHHHHHhhEEEEEEccccceeeccCCcccchH-------------HHHHHHHHHHH--hCCCEEEEEEeccCCC----C
Confidence 99999999999999999997622 333 34444443 32 4669999999987643 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEe
Q 003153 615 SVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVH 694 (843)
Q Consensus 615 ~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 694 (843)
.+. ++.+ .+ ++.|.++|+++ ++++|....+.. ..| ..-++|
T Consensus 285 ~~~----~a~~------~~-l~~L~~~gv~I-----~Vk~y~~p~~~~-----~~~------------------~~~f~H 325 (424)
T PHA02820 285 FIM----RNFL------RS-IAMLKSKNINI-----EVKLFIVPDADP-----PIP------------------YSRVNH 325 (424)
T ss_pred ccH----HHHH------HH-HHHHhccCceE-----EEEEEEcCcccc-----cCC------------------cceeee
Confidence 111 2111 11 45677788865 566673211100 000 123899
Q ss_pred eeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecC
Q 003153 695 AKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQP 732 (843)
Q Consensus 695 sKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~ 732 (843)
+|+||||| ++.|||||||.||+..| .|+++.++++
T Consensus 326 aK~~vvD~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~ 360 (424)
T PHA02820 326 AKYMVTDK-TAYIGTSNWTGNYFTDT--CGVSINITPD 360 (424)
T ss_pred eeEEEEcc-cEEEECCcCCHHHHhcc--CcEEEEEecC
Confidence 99999997 69999999999999966 9999999876
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=8.5e-31 Score=295.61 Aligned_cols=354 Identities=18% Similarity=0.144 Sum_probs=210.9
Q ss_pred cCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHH
Q 003153 194 NGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGD 273 (843)
Q Consensus 194 ~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~ 273 (843)
.++.++++.+| .++|++|+++|.+|+++|+|+.+.|..+ . .+..|.+
T Consensus 23 ~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-------~------~g~~il~ 69 (451)
T PRK09428 23 SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-------E------AGREILD 69 (451)
T ss_pred CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-------c------hHHHHHH
Confidence 67789999886 7899999999999999999999987542 1 3589999
Q ss_pred HHHHhhh--cCCeEEEEEeCCccccc-ccccccccccCCChHHHHhhhcC--CCcEEEeCCCCCCCccchhhcccccccc
Q 003153 274 LLKYKSQ--EGVRVLLLVWDDKTSHS-KFFINTAGVMQTHDEETRKFFKH--SSVHCVLSPRYASSKLSIFKQQVVGTLF 348 (843)
Q Consensus 274 lL~~ka~--~GV~VriLvwd~~~s~~-~~~~~~~~~~~~~~~~~~~~l~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 348 (843)
+|.+|++ +||+|+||+ |...+.. ..+... ........+.|+. +||++.++.. |.. ....+.
T Consensus 70 AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~~-p~~--------~~e~~g 135 (451)
T PRK09428 70 ALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYGV-PVN--------TREALG 135 (451)
T ss_pred HHHHHHhcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcCC-ccc--------cchhhh
Confidence 9998854 899999997 8741111 000000 0011234444543 3688876521 111 112355
Q ss_pred cCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChH
Q 003153 349 THHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPA 428 (843)
Q Consensus 349 shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpa 428 (843)
++|.|++|||++ |+|+| .|+.+ .|-+. + . ....|.+++|+||+
T Consensus 136 r~HrKi~IiD~~--------v~ysG-aNi~d-~Yl~~-~------------------------~--~~r~Dry~~i~g~~ 178 (451)
T PRK09428 136 VLHLKGFIIDDT--------VLYSG-ASLNN-VYLHQ-H------------------------D--KYRYDRYHLIRNAE 178 (451)
T ss_pred hceeeEEEECCC--------EEEec-ccccH-HHhcC-C------------------------c--ccCcceEEEEeCch
Confidence 799999999998 99987 79999 44221 0 0 01227788899999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccch--hh-hhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEec
Q 003153 429 AYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDD--AL-IKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRS 505 (843)
Q Consensus 429 a~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~--~l-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs 505 (843)
+.++...|.+.|..++..- ..+.. .|... .. .....+...+......++ .. .+...+++...
T Consensus 179 la~~~~~fi~~~~~~~~~v---~~l~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~-~~~~~~~v~p~ 243 (451)
T PRK09428 179 LADSMVNFIQQNLLNSPAV---NRLDQ--PNRPKTKEIKNDIRQFRQRLRDAAYQFQ---------GQ-ANNDELSVTPL 243 (451)
T ss_pred HHHHHHHHHHHHhhccCcc---ccccc--cccccchhhHHHHHHHHHHHhhhccCcc---------cc-cCCCCeEEeee
Confidence 9999999999997654310 00000 00000 00 000000000000000000 00 01112233322
Q ss_pred ccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHH
Q 003153 506 IDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELAL 585 (843)
Q Consensus 506 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~ 585 (843)
...+ | ...+...+..+|.+|++.|+|.++||+++ ..+..
T Consensus 244 ~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~-----------------~~l~~ 282 (451)
T PRK09428 244 VGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLP-----------------AILVR 282 (451)
T ss_pred eccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCC-----------------HHHHH
Confidence 2111 0 14678899999999999999999999953 34556
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHH-------HHHHHhcC---CCCCCCCCcEEEe
Q 003153 586 KIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEII-------AQELNSMQ---MENSHPQDYLNFY 655 (843)
Q Consensus 586 ~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i-------~~~L~~~g---~~~~~p~~yl~f~ 655 (843)
++..++++| ++|.||+|..-..+.-.+..+.+..+....+ .|... .+.|.++| +. +|
T Consensus 283 ~L~~a~~rG--v~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~---------i~ 349 (451)
T PRK09428 283 NIIRLLRRG--KKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVR---------LW 349 (451)
T ss_pred HHHHHHhcC--CcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEE---------EE
Confidence 666665544 8999999963211100001112222222211 11111 12334444 32 22
Q ss_pred ecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCC
Q 003153 656 CLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPH 733 (843)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~ 733 (843)
. |. .-..|+|.|+|||++++|||+|+|.||+. .|.|+++.|+|++
T Consensus 350 ~-----------~~--------------------~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~ 394 (451)
T PRK09428 350 K-----------DG--------------------DNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPK 394 (451)
T ss_pred e-----------cC--------------------CCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECCh
Confidence 1 21 12599999999999999999999999998 7799999999985
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.98 E-value=9.5e-31 Score=291.31 Aligned_cols=318 Identities=16% Similarity=0.179 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
-..|++++++|++||++|+|..|.+.- +++. .+.++.++|.+||+|||+||||+ |..++
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d~------~g~~i~~aL~~aa~rGV~Vril~-D~~~~--------- 88 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNL-----RSTP------EGRLILDKLKEAAESGVKVTILV-DEQSG--------- 88 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecc-----cCCc------hHHHHHHHHHHhccCCCeEEEEe-cCCCC---------
Confidence 368999999999999999999987321 1121 45899999999999999999996 86532
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
....+.|+..||++....... ....+.+|.|++|||++ +||+||+|+++ +|-+
T Consensus 89 -------~~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~ 141 (369)
T PHA03003 89 -------DKDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIS 141 (369)
T ss_pred -------CccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc--------EEEEecCccCC-cccC
Confidence 123567888899986432110 00012358899999999 99999999999 6644
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcccccccccccccccccchhh
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTRWHDDAL 464 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l 464 (843)
..|. ...|+|. ||+|.+|+..|.+.|+.+++...+
T Consensus 142 ~~~~-------------------------~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~--------------- 176 (369)
T PHA03003 142 TIKT-------------------------LGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVF--------------- 176 (369)
T ss_pred cccc-------------------------ceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcc---------------
Confidence 3322 2478883 999999999999999876443100
Q ss_pred hhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHH
Q 003153 465 IKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQ 544 (843)
Q Consensus 465 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~ 544 (843)
.... ..+. .|... . .. ...+. ..+++.+ + |.... .. ....++++|++
T Consensus 177 ~~~~-~~~~------~~~~~--~-~~-~~~~~--~~~~~~s---~-----P~~~~---------~~---~~~~~~~~ll~ 223 (369)
T PHA03003 177 NRLC-CACC------LPVST--K-YH-INNPI--GGVFFSD---S-----PEHLL---------GY---SRTLDADVVLH 223 (369)
T ss_pred cccc-cccC------Ccccc--c-cc-ccCCC--cceEEec---C-----ChHHc---------CC---CCCcCHHHHHH
Confidence 0000 0000 00000 0 00 00000 1123222 1 11100 00 01246889999
Q ss_pred HHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHH
Q 003153 545 AIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQG 624 (843)
Q Consensus 545 aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~ 624 (843)
+|.+||++|+|+++||++.... +. . -....++..+|.+|. +.+||+|+|++|.+...++ . .
T Consensus 224 ~I~~Ak~~I~I~t~yf~P~~~~--d~-~----~~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~~---~--------~ 284 (369)
T PHA03003 224 KIKSAKKSIDLELLSLVPVIRE--DD-K----TTYWPDIYNALIRAA-INRGVKVRLLVGSWKKNDV---Y--------S 284 (369)
T ss_pred HHHHHhhEEEEEEeccccEEee--CC-C----CccHHHHHHHHHHHH-HcCCCEEEEEEecCCcCCc---h--------h
Confidence 9999999999999999753211 00 0 001235566665542 1356999999996421111 0 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeE
Q 003153 625 QTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEY 704 (843)
Q Consensus 625 ~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~ 704 (843)
+ ...+.|.++|+.. .-.+++|. | ..|+|+|||||++
T Consensus 285 ~-------~~~~~L~~~G~~~---~i~vri~~-----------~-----------------------~~H~K~~VVD~~~ 320 (369)
T PHA03003 285 M-------ASVKSLQALCVGN---DLSVKVFR-----------I-----------------------PNNTKLLIVDDEF 320 (369)
T ss_pred h-------hHHHHHHHcCCCC---CceEeeec-----------C-----------------------CCCceEEEEcCCE
Confidence 1 1246788888531 11122221 0 1699999999999
Q ss_pred EEEcccCccCCCcCCCCCcceEEeeecCC
Q 003153 705 VILGSANINQRSLAGGRDTEIAMGAYQPH 733 (843)
Q Consensus 705 ~iiGSANin~RSm~~~rDsEi~v~i~d~~ 733 (843)
++|||+||+.||+..+ .|+++.+.++.
T Consensus 321 a~iGS~N~d~~s~~~~--~e~~~~~~~~~ 347 (369)
T PHA03003 321 AHITSANFDGTHYLHH--AFVSFNTIDKE 347 (369)
T ss_pred EEEeccccCchhhccC--CCeEEecCChh
Confidence 9999999999999854 89887766653
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.94 E-value=4.4e-26 Score=223.99 Aligned_cols=157 Identities=50% Similarity=0.809 Sum_probs=135.9
Q ss_pred eEEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCC
Q 003153 8 IVYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQ 87 (843)
Q Consensus 8 ~~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~ 87 (843)
.+||||+|+|+|++|++|++||..++.++++|.++..|.....+..........+++||||+|++++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 46899999999999999999999888888888876655443111111222345677999999999998889999999999
Q ss_pred CCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 88 NPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
||+|||+|.|++++....|.|+|||++.+++++||++.+|++++..|...+.|++|.+.++++.+..++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999998888899999999999999999999999999999999999999998899988899999999995
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.93 E-value=1.9e-26 Score=188.20 Aligned_cols=74 Identities=61% Similarity=1.155 Sum_probs=71.7
Q ss_pred CcccccCCcchHHHHHHHHHHHHhHHHhhhcccCCCCcceeeCcccccCCCCccCCCCCCCCCCCCCccccccC
Q 003153 762 LDDCFREPESLECVKFVNTIAEDNWKKFTADAFTPLQGHILKYPVEVKSNGKESPLPGHETFPDVGGKVQGARS 835 (843)
Q Consensus 762 ~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 835 (843)
+++.|.+|+|+||++++|++|++||++|+++++.+|+|||+.||+.|++||++++|||+++||||+|+|||++|
T Consensus 1 le~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 1 LEECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.3e-20 Score=176.06 Aligned_cols=118 Identities=26% Similarity=0.502 Sum_probs=104.2
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccC-CCCCe
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISN-CQNPI 90 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~-~~nP~ 90 (843)
.|+|.|+|++|++|++.+ ++. +||||+|.+++.+. ||+++.+ +.||+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~------------------------------sDPYv~i~lg~~~~-kT~v~~~~~~nP~ 48 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR------------------------------MDPYCRIRVGHAVY-ETPTAYNGAKNPR 48 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC------------------------------CCceEEEEECCEEE-EeEEccCCCCCCc
Confidence 389999999999988766 443 99999999988655 9999977 79999
Q ss_pred eeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEeccc-ccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 91 WNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAA-RIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 91 WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~-~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|||+|.|.+++....|.|+|||+|.++ +++||.+.|++. .+..|+..+.||+|.+.++++ ..|+|+|+++|
T Consensus 49 WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 49 WNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred cCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 999999999887778999999999998 799999999995 688898899999998776654 57999999987
No 16
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.83 E-value=6.7e-20 Score=175.90 Aligned_cols=125 Identities=26% Similarity=0.462 Sum_probs=112.1
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCe
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPI 90 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~ 90 (843)
+...|.|.|+||++||.+ .+|||+|.+++++++||+++.++.||.
T Consensus 9 ~~~sL~v~V~EAk~Lp~~-----------------------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~ 53 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK-----------------------------------KRYYCELCLDKTLYARTTSKLKTDTLF 53 (146)
T ss_pred EEEEEEEEEEEccCCCCc-----------------------------------CCceEEEEECCEEEEEEEEEcCCCCCc
Confidence 468899999999999863 489999999999999999999999999
Q ss_pred eeeeEEEeecCCCceEEEEEEe-CCCC----CCcceeEEEecccccccCCceeeEEEcccCCCCC-------CCCcceEE
Q 003153 91 WNEHFKIPLAHPVSQIEFYVKD-NDVF----GADLIGVATIPAARIKSGESISDWFPILGLYGKP-------PKSETAVF 158 (843)
Q Consensus 91 WnE~f~~~v~~~~~~l~~~V~d-~d~~----~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~-------~~~~g~l~ 158 (843)
|+|+|.|+++++.+.|+|+|++ .+.. ++++||.+.||++.+..|..++.||||.+..+++ .+..++|+
T Consensus 54 W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lr 133 (146)
T cd04013 54 WGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIR 133 (146)
T ss_pred ceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEE
Confidence 9999999999999999999964 4443 4799999999999999999999999999988886 56778999
Q ss_pred EEEEEEeccCCC
Q 003153 159 MEMRFLPCEENP 170 (843)
Q Consensus 159 l~l~~~~~~~~~ 170 (843)
|+++|.++...|
T Consensus 134 ik~rf~~~~~lP 145 (146)
T cd04013 134 IKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEeeeCC
Confidence 999999987655
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=9.5e-19 Score=164.61 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=101.2
Q ss_pred EEEEEEEeeC---CCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 15 LDLKIVEARR---LPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 15 L~V~I~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
|+|+|++|++ |+.+|..+. +||||+|.+++. ..||++++++.||+|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------sDPYv~i~~g~~-~~rTk~~~~~~nP~W 50 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------TDAYCVAKYGPK-WVRTRTVEDSSNPRW 50 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------CCeeEEEEECCE-EeEcCcccCCCCCcc
Confidence 8999999999 776665553 999999999885 459999999999999
Q ss_pred eeeEEEeecCCCceEEEEEEeCCCC-------CCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEE
Q 003153 92 NEHFKIPLAHPVSQIEFYVKDNDVF-------GADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFM 159 (843)
Q Consensus 92 nE~f~~~v~~~~~~l~~~V~d~d~~-------~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l 159 (843)
||+|.|++.++...|+|+|||++.. ++++||++.+++..+..+...+.||+|.+.++++.+..|+|++
T Consensus 51 nE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 51 NEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred eeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999988778899999999886 6899999999999999999999999998877666677888875
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=2.8e-18 Score=161.41 Aligned_cols=119 Identities=24% Similarity=0.388 Sum_probs=107.2
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|.|+|++|++|++++..+. +||||++.+.+..+++|+++.++.||.|||+
T Consensus 2 L~v~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~ 51 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT------------------------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEK 51 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC------------------------------CCCeEEEEECCEEEEEeeeccCCCCCcccee
Confidence 7899999999998886554 8999999999877889999999999999999
Q ss_pred EEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 95 FKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 95 f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
|.|.+.+....|.|+|||++.++ +++||.+.+++.++..+...+.|++|.+..+. +..|+|+|.++|.|
T Consensus 52 f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 52 FTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred EEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 99999877778999999999985 89999999999999999999999999876552 45899999999876
No 19
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.7e-18 Score=164.04 Aligned_cols=117 Identities=21% Similarity=0.443 Sum_probs=101.1
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
+.|+|++|++|++++..+. +||||+|.+++. ..||++++++.||+|||.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------~dpYv~v~l~~~-~~kT~v~~~t~nP~Wne~ 49 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------NDAYVIIQLGKE-KYSTSVKEKTTSPVWKEE 49 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------CCceEEEEECCe-eeeeeeecCCCCCEeCce
Confidence 5799999999998876553 899999999874 559999999999999999
Q ss_pred EEEeecC------CCceEEEEEEeCCCCC-CcceeEEEecccccc--cCCceeeEEEcccCCCCCCCCcceEEEEEE
Q 003153 95 FKIPLAH------PVSQIEFYVKDNDVFG-ADLIGVATIPAARIK--SGESISDWFPILGLYGKPPKSETAVFMEMR 162 (843)
Q Consensus 95 f~~~v~~------~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~--~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~ 162 (843)
|.|.+.. ....|.|+|||++.++ +++||++.|++.++. .+.....||+|.+..+++.+..|+|+|+++
T Consensus 50 f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 50 CSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999876 3457999999999887 899999999999998 577788999998776655567899999875
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.9e-17 Score=156.87 Aligned_cols=120 Identities=22% Similarity=0.426 Sum_probs=102.2
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
+..|+|+|++|++|+..+ ++||||+|.+++..++||++. ++.||.|
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---------------------------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~W 48 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---------------------------------VPHPYCVISLNEVKVARTKVR-EGPNPVW 48 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---------------------------------CCCeeEEEEECCEeEEEeecC-CCCCCcc
Confidence 357999999999998632 289999999998777899985 5899999
Q ss_pred eeeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 92 NEHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 92 nE~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
||+|.|.+..+. ..+.|.|+|.+..+ +++||.+.||+..+..|...+.||+|....++..+..|+|+|+++|.+
T Consensus 49 nE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 49 SEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999975543 46899999998886 899999999999999999999999998765434456799999999986
No 21
>PRK05443 polyphosphate kinase; Provisional
Probab=99.75 E-value=1e-16 Score=189.00 Aligned_cols=267 Identities=16% Similarity=0.188 Sum_probs=182.8
Q ss_pred hhHHHHHHHHHHhccc-----eEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCccccccc
Q 003153 225 ERCWEDICHAILEAHH-----LVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKF 299 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~ 299 (843)
-+.|+.+.+.|++|.+ +|.|+-|.+.. ..++.++|..||++||+|+||| +....
T Consensus 347 Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~kar---- 405 (691)
T PRK05443 347 YESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKAR---- 405 (691)
T ss_pred ccCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCcc----
Confidence 4568889999999998 89999887642 3689999999999999999998 54321
Q ss_pred ccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCC
Q 003153 300 FINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCD 379 (843)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 379 (843)
+....+....+.|+.+||+|++.. + .+..|.|+++||++. +++-+..+++|+.|+..
T Consensus 406 ------fde~~n~~~~~~L~~aGv~V~y~~--~--------------~~k~HaK~~lid~~e-~~~~~~~~~iGTgN~n~ 462 (691)
T PRK05443 406 ------FDEEANIRWARRLEEAGVHVVYGV--V--------------GLKTHAKLALVVRRE-GGGLRRYVHLGTGNYNP 462 (691)
T ss_pred ------ccHHHHHHHHHHHHHcCCEEEEcc--C--------------CccceeEEEEEEeec-CCceeEEEEEcCCCCCc
Confidence 111112345677889999996421 1 124899999999862 23344489999999888
Q ss_pred cccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeC-hHHHHHHHHHHHHHhhhccccccccccccccc
Q 003153 380 GRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEG-PAAYDVLTNFEQRWRKATKWSEFGQRFKRVTR 458 (843)
Q Consensus 380 ~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G-paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~ 458 (843)
++ ...|.|+.+.... ..+.|+...|...|.......
T Consensus 463 -~s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~----------- 499 (691)
T PRK05443 463 -KT-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK----------- 499 (691)
T ss_pred -ch-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-----------
Confidence 22 1357899999655 478999999998875421100
Q ss_pred ccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHH
Q 003153 459 WHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSI 538 (843)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI 538 (843)
+. .++-+ |.. ....+
T Consensus 500 -----------~~-----------------------------~l~~s---------P~~----------------~~~~l 514 (691)
T PRK05443 500 -----------LR-----------------------------KLLVS---------PFT----------------LRERL 514 (691)
T ss_pred -----------cc-----------------------------EEeec---------Ccc----------------HHHHH
Confidence 00 11111 111 13678
Q ss_pred HHHHHHHHHhccc----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEe-------cCCC
Q 003153 539 QTAYIQAIRSAQH----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVM-------PMWP 607 (843)
Q Consensus 539 ~~ayl~aI~~Ak~----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVl-------P~~p 607 (843)
.+.+.+.|.+||+ +|+|.+.||.. ..+..+|..|.++| |+|.+++ |..|
T Consensus 515 ~~~i~~ei~~Ak~G~~a~I~ik~n~l~d------------------~~ii~aL~~As~~G--V~V~liVRGiC~l~pgip 574 (691)
T PRK05443 515 LELIDREIANARAGKPARIIAKMNSLVD------------------PQIIDALYEASQAG--VKIDLIVRGICCLRPGVP 574 (691)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCCC------------------HHHHHHHHHHHHCC--CeEEEEEecccccCCCCC
Confidence 8899999999999 99999999752 35667777775555 8888888 2211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccc
Q 003153 608 EGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQ 687 (843)
Q Consensus 608 eg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (843)
|.++...+. ++...+.+
T Consensus 575 -g~sd~i~v~---------------s~v~r~Le----------------------------------------------- 591 (691)
T PRK05443 575 -GLSENIRVR---------------SIVGRFLE----------------------------------------------- 591 (691)
T ss_pred -CCCCCEEEH---------------HHHHHHHh-----------------------------------------------
Confidence 222322221 12333333
Q ss_pred eeeEEEeeeEEEE---eeeEEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 688 RFMIYVHAKGMVV---DDEYVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 688 ~~~iyvHsKlmIV---DD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
|+|+++. ||.+++||||||+.||+. ++.|+++.|+|+..
T Consensus 592 ------h~rIy~f~~gd~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 592 ------HSRIYYFGNGGDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred ------cCEEEEEeCCCCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 2233333 789999999999999998 66999999999854
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.74 E-value=2.2e-17 Score=155.12 Aligned_cols=119 Identities=27% Similarity=0.470 Sum_probs=101.2
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|.|+|++|++|+.++... +.+||||+|.+.+..+++|++++++.||.|||+
T Consensus 2 l~v~v~~a~~L~~~~~~~-----------------------------g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~ 52 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPN-----------------------------KMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGED 52 (121)
T ss_pred eEEEEEEccCCCCCCCCC-----------------------------CCcCcEEEEEECCccEEEeeEEECCCCCccCCe
Confidence 789999999999864321 128999999998877889999999999999999
Q ss_pred EEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 95 FKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 95 f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|.|.+++....|.|.|||++.++ +++||.+.++++++..+...+.||+|...... .+..|+|+++++|
T Consensus 53 F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~ 121 (121)
T cd08401 53 FYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD-SEVQGKVHLELRL 121 (121)
T ss_pred EEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCC-CcccEEEEEEEEC
Confidence 99999876678999999999886 89999999999999988888999999754221 2347999998874
No 23
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=2.4e-17 Score=160.50 Aligned_cols=123 Identities=26% Similarity=0.353 Sum_probs=104.9
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccC-CCCCeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISN-CQNPIWN 92 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~-~~nP~Wn 92 (843)
.|.|+|++|++|++++.++. +||||+|.+++ ...+|+++.+ +.||+||
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------sDPYV~v~l~~-~~~kTk~~~~~t~nP~WN 49 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------PEVFVKAQLGN-QVLRTRPSQTRNGNPSWN 49 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------CCeEEEEEECC-EEeeeEeccCCCCCCccc
Confidence 38999999999999887654 89999999998 5669999977 6999999
Q ss_pred eeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccC----CceeeEEEcccCCC-----CCCCCcceEEEEE
Q 003153 93 EHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSG----ESISDWFPILGLYG-----KPPKSETAVFMEM 161 (843)
Q Consensus 93 E~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g----~~~~~w~~L~~~~~-----~~~~~~g~l~l~l 161 (843)
|+|.|.+.++. ..|.|+|+|.+..+ +++||++.||++++..+ ...+.||+|.+..+ ++.+..|+|+|++
T Consensus 50 E~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i 129 (150)
T cd04019 50 EELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRL 129 (150)
T ss_pred CcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEE
Confidence 99999997654 47899999998875 89999999999999753 45789999987765 5567789999999
Q ss_pred EEEecc
Q 003153 162 RFLPCE 167 (843)
Q Consensus 162 ~~~~~~ 167 (843)
+|.+..
T Consensus 130 ~~~~~~ 135 (150)
T cd04019 130 CLDGGY 135 (150)
T ss_pred EecCcc
Confidence 998543
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.5e-17 Score=155.70 Aligned_cols=116 Identities=26% Similarity=0.508 Sum_probs=100.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccC-CCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISN-CQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~-~~nP~W 91 (843)
|+|.|+|++|++|++.+..+. +||||+|.+++ .+.+|+++.+ +.||.|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~-~~~kT~~~~~~~~nP~W 49 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------QDPYCVLRIGG-VTKKTKTDFRGGQHPEW 49 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------CCceEEEEECC-CccccccccCCCCCCcc
Confidence 789999999999998876654 89999999988 5669998865 789999
Q ss_pred eeeEEEeecCC-CceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 92 NEHFKIPLAHP-VSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 92 nE~f~~~v~~~-~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
||.|.|.+..+ ...|.|+|||++..++++||++.+++.++..+...+.|++|.+. + +..|+|+++++|
T Consensus 50 ne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~-~---~~~G~i~l~l~f 118 (118)
T cd08681 50 DEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLK-G---RYAGEVYLELTF 118 (118)
T ss_pred CceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEeccC-C---cEeeEEEEEEEC
Confidence 99999999874 45699999999988899999999999999887778899999643 3 347999999986
No 25
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.73 E-value=2e-16 Score=185.25 Aligned_cols=267 Identities=16% Similarity=0.184 Sum_probs=179.0
Q ss_pred hhHHHHHHHHHHhccc-----eEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCccccccc
Q 003153 225 ERCWEDICHAILEAHH-----LVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKF 299 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~ 299 (843)
-+.|+.+.+.|++|.+ +|.|+-|.+.. ..++.++|.+||++|++|+++| +-.....
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd-- 398 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFD-- 398 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhcc--
Confidence 4568889999999998 89999987742 2689999999999999999998 5211100
Q ss_pred ccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCC
Q 003153 300 FINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCD 379 (843)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 379 (843)
...+..+.+.|+.+|++|+..- ..+..|.|+++||.+. +.+-+..+++|.-|...
T Consensus 399 --------e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~-~~~~~~y~~igTgN~n~ 453 (672)
T TIGR03705 399 --------EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRRE-GGELRRYVHLGTGNYHP 453 (672)
T ss_pred --------chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEee-CCceEEEEEecCCCCCC
Confidence 0113356678899999998521 1236899999999762 22222356777666555
Q ss_pred cccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeee-eeChHHHHHHHHHHHHHhhhccccccccccccccc
Q 003153 380 GRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCK-IEGPAAYDVLTNFEQRWRKATKWSEFGQRFKRVTR 458 (843)
Q Consensus 380 ~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~-v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~ 458 (843)
. + -..|.|+++. ..+..+.|+...|...|.......
T Consensus 454 ~-------------------------------t-a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~----------- 490 (672)
T TIGR03705 454 K-------------------------------T-ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK----------- 490 (672)
T ss_pred c-------------------------------c-cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-----------
Confidence 1 1 1368999998 788899999999998876321110
Q ss_pred ccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHH
Q 003153 459 WHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSI 538 (843)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI 538 (843)
.. .++ + + |.. ....+
T Consensus 491 --------~~--------------------------------~l~-~---~-----P~~----------------~~~~~ 505 (672)
T TIGR03705 491 --------FK--------------------------------HLL-V---S-----PFT----------------LRKRL 505 (672)
T ss_pred --------hH--------------------------------HHH-h---C-----cch----------------HHHHH
Confidence 00 000 0 0 111 13567
Q ss_pred HHHHHHHHHhccc----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEe-------cCCC
Q 003153 539 QTAYIQAIRSAQH----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVM-------PMWP 607 (843)
Q Consensus 539 ~~ayl~aI~~Ak~----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVl-------P~~p 607 (843)
.+.+.+.|.+||+ +|+|.+.||.. ..+..+|..|.++| |+|.+++ |..|
T Consensus 506 ~~~i~~ei~~Ak~g~~~~I~ik~n~l~D------------------~~ii~aL~~As~aG--V~V~LivRGiCcL~pgip 565 (672)
T TIGR03705 506 LELIDREIENARAGKPARIIAKMNSLVD------------------PDLIDALYEASQAG--VKIDLIVRGICCLRPGVP 565 (672)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCCC------------------HHHHHHHHHHHHCC--CeEEEEEecccccCCCCC
Confidence 8889999999999 99999999752 35667777775555 8888887 2111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccc
Q 003153 608 EGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQ 687 (843)
Q Consensus 608 eg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (843)
|.++...+. ++...+.+
T Consensus 566 -g~sd~i~v~---------------siv~r~Le----------------------------------------------- 582 (672)
T TIGR03705 566 -GLSENIRVR---------------SIVGRFLE----------------------------------------------- 582 (672)
T ss_pred -CCCCCEEEE---------------EEhhHhhC-----------------------------------------------
Confidence 111111110 01111111
Q ss_pred eeeEEEeeeEEEE---eeeEEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 688 RFMIYVHAKGMVV---DDEYVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 688 ~~~iyvHsKlmIV---DD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
|+|+.+. ||.+++||||||+.|||. +..|+++.|+|+..
T Consensus 583 ------h~rIy~f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 583 ------HSRIYYFGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred ------cCEEEEEeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 5555555 588999999999999998 66999999999843
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=5.4e-17 Score=154.02 Aligned_cols=120 Identities=21% Similarity=0.341 Sum_probs=100.8
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|.|+|++|++|++.+..+. +||||+|.+++.+ .||+++.++.||.|||
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~rT~v~~~t~nP~Wne 49 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------SSAYVELDFDGQK-KRTRTKPKDLNPVWNE 49 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------cCcEEEEEECCEE-ecceeEcCCCCCccce
Confidence 48999999999998876553 8999999999854 5999999999999999
Q ss_pred eEEEeecCCC----ceEEEEEEeCCCC--CCcceeEEEecccccc-cCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 94 HFKIPLAHPV----SQIEFYVKDNDVF--GADLIGVATIPAARIK-SGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 94 ~f~~~v~~~~----~~l~~~V~d~d~~--~~~~IG~~~ipl~~l~-~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
.|.|.+.++. ..|.|+|||.+.+ ++++||++.++++++. .+.....||+|.... ...+..|+|+|++.++.
T Consensus 50 ~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 50 KLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-LFSRVRGEIGLKVYITD 127 (127)
T ss_pred EEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-CCCCccEEEEEEEEEcC
Confidence 9999997643 4699999999877 4899999999999997 577778999997543 22245899999999863
No 27
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=1.3e-16 Score=151.16 Aligned_cols=122 Identities=24% Similarity=0.399 Sum_probs=103.9
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-EEEEEeeeccCCCCCeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-ATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-~~~~rT~vi~~~~nP~WnE 93 (843)
|.|+|++|++|+. ..+ ++||||++++.. ....||+++.++.||.|||
T Consensus 1 l~v~v~~A~~L~~--~~g------------------------------~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne 48 (126)
T cd08678 1 LLVKNIKANGLSE--AAG------------------------------SSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDE 48 (126)
T ss_pred CEEEEEEecCCCC--CCC------------------------------CcCCEEEEEECCCCcEEEeEEEecCCCCccCc
Confidence 6799999999986 333 289999999975 3457999999999999999
Q ss_pred eEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEeccC
Q 003153 94 HFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPCEE 168 (843)
Q Consensus 94 ~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~~ 168 (843)
.|.|.+......|.|+|||.+..+ +++||++.+++.++..+.....||+|....++..+..|+|.+.++|.+-++
T Consensus 49 ~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 49 HFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred eEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 999999766678999999999887 899999999999999888888999997664433356899999999987553
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=7.8e-17 Score=151.45 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=97.4
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|.|+|++|++|+.+ . +||||+|.+++ ...||++++++.||+|||+
T Consensus 2 L~V~Vi~a~~L~~~----~------------------------------~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~ 46 (121)
T cd08378 2 LYVRVVKARGLPAN----S------------------------------NDPVVEVKLGN-YKGSTKAIERTSNPEWNQV 46 (121)
T ss_pred EEEEEEEecCCCcc----c------------------------------CCCEEEEEECC-ccccccccCCCCCCccceE
Confidence 89999999999865 2 89999999987 5679999999999999999
Q ss_pred EEEeecCC-CceEEEEEEeCCCCCCcceeEEEecccccccCC-----ceeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 95 FKIPLAHP-VSQIEFYVKDNDVFGADLIGVATIPAARIKSGE-----SISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 95 f~~~v~~~-~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~-----~~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
|.|.+.+. ...|.|+|||++..++++||++.++++++..+. ....||+|.+..+ .+..|+|+|+++|-
T Consensus 47 F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 47 FAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEec
Confidence 99999874 556999999999888999999999999987532 3568999987655 35689999999983
No 29
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.70 E-value=2e-16 Score=148.16 Aligned_cols=117 Identities=28% Similarity=0.495 Sum_probs=101.2
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|+|+|++|++|++++..+. +||||+|.+.+. .++|++++++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------~dPyv~v~~~~~-~~~T~~~~~t~nP~W~ 49 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------SDPFCVLELVNA-RLQTHTIYKTLNPEWN 49 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------CCcEEEEEECCE-eeecceecCCcCCccC
Confidence 789999999999998876554 899999999875 4699999999999999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|+|.|++.+....+.|+|||++..+ +++||++.+++.++..+. ..|++|.+..++. +..|+|.++++|
T Consensus 50 e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 50 KIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred cEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 9999999876778999999999865 899999999999998664 4799997664433 468999999886
No 30
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.70 E-value=2.3e-16 Score=148.36 Aligned_cols=118 Identities=26% Similarity=0.551 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|.|+|++|++|++++..+. +||||+|.+.+..++||++++++.||.|||
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne 50 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGS------------------------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGE 50 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCC------------------------------CCceEEEEECCEeeeeeeeEcCCCCCcccc
Confidence 38999999999999887654 899999999987788999999999999999
Q ss_pred eEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccC-CceeeEEEcccCCCCCCCCcceEEEEEE
Q 003153 94 HFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG-ESISDWFPILGLYGKPPKSETAVFMEMR 162 (843)
Q Consensus 94 ~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g-~~~~~w~~L~~~~~~~~~~~g~l~l~l~ 162 (843)
.|.|++.+....|.|+|||++.++ +++||++.++++++..+ ...+.|++|.+..+. .+..|+|++.++
T Consensus 51 ~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 51 EYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred eEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 999999876678999999999887 89999999999998764 347899999754322 134799988764
No 31
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.8e-16 Score=149.59 Aligned_cols=121 Identities=30% Similarity=0.439 Sum_probs=101.2
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-EEEEEeeeccCCCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-ATVARTRVISNCQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-~~~~rT~vi~~~~nP~W 91 (843)
|.|+|+|++|++|++.+...+ .+||||+|.+.+ ..+++|+++.++.||.|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~W 52 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------TVDPYVTFSISNRRELARTKVKKDTSNPVW 52 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------CCCCeEEEEECCCCcceEeeeecCCCCCcc
Confidence 789999999999997653321 289999999998 57789999999999999
Q ss_pred eeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 92 NEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 92 nE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
||.|.|.+......|.|+|||.+..+ +++||.+.+++.++..+...+.|...+...+++ .|+|+++++|.|
T Consensus 53 ne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~~~l~~~p 124 (124)
T cd04044 53 NETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEEEEEEeCC
Confidence 99999999865778999999998886 899999999999999877765444333445543 799999999986
No 32
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=4.6e-16 Score=148.70 Aligned_cols=126 Identities=21% Similarity=0.402 Sum_probs=102.9
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCe
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPI 90 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~ 90 (843)
..|.|+|+|++|++|++.+..+.. -|. ....+.+||||++.+++.++.+|++++++.||.
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~-----------------~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~ 61 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AVP-----------------KKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPV 61 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---ccc-----------------ccCccCcCcEEEEEECCEEEeEEeEcCCCCCCC
Confidence 469999999999999987753210 000 000124899999999998888999999999999
Q ss_pred eeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEeccccccc--CCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 91 WNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKS--GESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 91 WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~--g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
|||+|.|.+. ....|.|.|+|++.++ +++||++.++++++.. +...+.|++|. +.|+|+++++|..
T Consensus 62 Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 62 WNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred cceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 9999999997 4567999999998876 7999999999999987 56788999994 3699999999875
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2.7e-16 Score=150.43 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE------EEEEeeeccCCC
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA------TVARTRVISNCQ 87 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~------~~~rT~vi~~~~ 87 (843)
.|+|+|++|++|+.++..+. +||||+|.+.+. ...+|++++++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~ 50 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTL 50 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------cCcEEEEEEECCCCCCcccceeeeEEcCCC
Confidence 48999999999998876554 899999999764 256999999999
Q ss_pred CCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCc------eeeEEEcccCCCCCCCCcceEEEE
Q 003153 88 NPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES------ISDWFPILGLYGKPPKSETAVFME 160 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~------~~~w~~L~~~~~~~~~~~g~l~l~ 160 (843)
||.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+.. ...||+|.+..++ .+..|+|+++
T Consensus 51 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~ 129 (133)
T cd04033 51 NPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLY 129 (133)
T ss_pred CCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEE
Confidence 999999999999776677999999999987 8999999999999987543 3589999754332 2468999999
Q ss_pred EEEE
Q 003153 161 MRFL 164 (843)
Q Consensus 161 l~~~ 164 (843)
++|.
T Consensus 130 ~~~~ 133 (133)
T cd04033 130 MAYL 133 (133)
T ss_pred EeeC
Confidence 9984
No 34
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=6e-16 Score=144.38 Aligned_cols=113 Identities=27% Similarity=0.377 Sum_probs=99.2
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|+|+|++|++|+.++..+. +||||++.+.+ ...+|++++++.||.|||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne 49 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------SDPYVKFRLGN-EKYKSKVCSKTLNPQWLE 49 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------CCcEEEEEECC-EeEecccccCCCCCceeE
Confidence 37899999999998876553 89999999987 557999999999999999
Q ss_pred eEEEeecCC-CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 94 HFKIPLAHP-VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 94 ~f~~~v~~~-~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
+|.|.+... ...|.|+|||++.++ +++||++.+++.++..+...+.|++|.+. .|+|++.+.|+
T Consensus 50 ~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 50 QFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 999999775 467999999999886 89999999999999988889999999532 58999988875
No 35
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=3.4e-16 Score=146.98 Aligned_cols=120 Identities=25% Similarity=0.470 Sum_probs=99.9
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|++++..... ...+.+||||+|.+++ .+++|++++++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~------------------------~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~ 55 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG------------------------LVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWN 55 (121)
T ss_pred CeEEEEEEEccCCccccccccc------------------------CCCCCcCCEEEEEECC-EeEEccccCCCCCCccc
Confidence 7899999999999987753100 0012389999999988 67899999999999999
Q ss_pred eeEEEeecC-CCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 93 EHFKIPLAH-PVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 93 E~f~~~v~~-~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+...+.||+|.+. ..|+|+++++|
T Consensus 56 e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 56 EVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 999999865 456799999999888889999999999999887778999999643 36999998875
No 36
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.68 E-value=4.5e-16 Score=147.78 Aligned_cols=120 Identities=24% Similarity=0.446 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCC--chhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCe
Q 003153 13 GDLDLKIVEARRLPNMDL--VTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPI 90 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~ 90 (843)
|.|.|+|++|++|++.+. .+. +||||.|.+++ ...+|++++++.||.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------~dPyv~v~~~~-~~~kT~~~~~t~~P~ 49 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------SDPYAILSVGA-QRFKTQTIPNTLNPK 49 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------cCCeEEEEECC-EEEecceecCCcCCc
Confidence 789999999999998776 443 89999999977 456999999999999
Q ss_pred eeeeEEEeecC-CCceEEEEEEeCCCCC-CcceeEEEeccccccc---CCceeeEEEcccCC-CCCCCCcceEEEEEEE
Q 003153 91 WNEHFKIPLAH-PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKS---GESISDWFPILGLY-GKPPKSETAVFMEMRF 163 (843)
Q Consensus 91 WnE~f~~~v~~-~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~~~-~~~~~~~g~l~l~l~~ 163 (843)
|||+|.|++.. ....|.|+|||.+..+ +++||.+.+++.++.. ....+.||+|.+.. ++.....|+|+|+++|
T Consensus 50 Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 50 WNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999987 4567999999999885 8999999999999873 34467899997663 2223468999998864
No 37
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=4.8e-16 Score=145.78 Aligned_cols=113 Identities=27% Similarity=0.463 Sum_probs=96.9
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCCeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNPIWN 92 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP~Wn 92 (843)
|.|+|++|++|++.+..+. +||||++.+.+ ....||++++++.||+||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wn 51 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------PDCYVELWLPTASDEKKRTKTIKNSINPVWN 51 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------CCcEEEEEEcCCCCccCccceecCCCCCccc
Confidence 7899999999998876543 89999999964 356799999999999999
Q ss_pred eeEEEeecCCC-ceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 93 EHFKIPLAHPV-SQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 93 E~f~~~v~~~~-~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|+|.|.+.... ..|.|+|||++.+++++||++.+++.++..|...+.||+|.+. ..|+|++.+.+
T Consensus 52 e~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 52 ETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred eEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 99999987643 3589999999988889999999999999999999999999633 26888877754
No 38
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=8.2e-16 Score=145.06 Aligned_cols=117 Identities=25% Similarity=0.394 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|+|+|++|++|+.++..+. +||||+|++++ ...+|++++++.||.|||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne 49 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------SDPFVRVFYNG-QTLETSVVKKSCYPRWNE 49 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------cCceEEEEECC-EEEeceeecCCCCCccCc
Confidence 48999999999998876553 89999999987 456999999999999999
Q ss_pred eEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC---CCCcceEEEEE
Q 003153 94 HFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP---PKSETAVFMEM 161 (843)
Q Consensus 94 ~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~---~~~~g~l~l~l 161 (843)
+|.|.+.... ..|.|+|||++.++ +++||.+.+++.++..+...+.||+|.....++ .+..|.|+|.+
T Consensus 50 ~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 50 VFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999997754 56999999999887 799999999999998877788999998653332 24567888765
No 39
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.65 E-value=5.7e-16 Score=145.79 Aligned_cols=101 Identities=25% Similarity=0.474 Sum_probs=88.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+.++ .+. +||||+|++.+ ....||++++++.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~------------------------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~ 60 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD------------------------------PDPYVKTYLLPDPQKTTKRKTKVVRKTR 60 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC------------------------------CCCEEEEEEeeCCccCCceeCCccCCCC
Confidence 699999999999999888 443 89999999974 2456999999999
Q ss_pred CCeeeeeEEEee-cC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEc
Q 003153 88 NPIWNEHFKIPL-AH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 88 nP~WnE~f~~~v-~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
||+|||+|.|.+ +. ....|.|+|||++.++ +++||++.|++.++..+...+.||+|
T Consensus 61 nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 61 NPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 999999999987 32 3456999999999887 89999999999999988888999997
No 40
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=4.2e-16 Score=145.92 Aligned_cols=102 Identities=20% Similarity=0.380 Sum_probs=88.5
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
-+|.|.|+|++|++|++++ .+. +||||+|++.+ ....||++++++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~------------------------------~dpYVkv~l~p~~~~~~~~kT~v~~~t 58 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT------------------------------CNSYVKISLSPDKEVRFRQKTSTVPDS 58 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC------------------------------CCeeEEEEEEeCCCCcceEeCccccCC
Confidence 4799999999999999887 443 89999999975 346699999999
Q ss_pred CCCeeeeeEEEeecCCC--ceEEEEEEeCCCCC--CcceeEEEecccccccCCceeeEEEc
Q 003153 87 QNPIWNEHFKIPLAHPV--SQIEFYVKDNDVFG--ADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~--~~l~~~V~d~d~~~--~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
.||.|||+|.|.+.+.. ..|.|+|||.+..+ +++||.+.||+.++..+..+++||.|
T Consensus 59 ~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 59 ANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 99999999999987632 46899999988764 68999999999999988889999976
No 41
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.65 E-value=3.4e-15 Score=141.45 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=101.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
++.|+|+|++|++|+..+.++. +||||++.+++. ..||++++++.||+|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------~dPyv~v~~~~~-~~kT~v~~~t~nP~W 50 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------ADPYVIIKCEGE-SVRSPVQKDTLSPEF 50 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------cCccEEEEECCE-EEEeCccCCCCCCcc
Confidence 5789999999999998876554 899999999885 469999999999999
Q ss_pred eeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCC-CCCCCcceEEEEEEEEec
Q 003153 92 NEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYG-KPPKSETAVFMEMRFLPC 166 (843)
Q Consensus 92 nE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~-~~~~~~g~l~l~l~~~~~ 166 (843)
||.|.|.+......|.|+|||++.+++++||.+.+++.++.. ....|++|..... ...+..|+|.+++.+.+-
T Consensus 51 ne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 51 DTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred cceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 999999998777789999999998889999999999987643 3447888863321 223568999999987663
No 42
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.65 E-value=2e-15 Score=144.78 Aligned_cols=114 Identities=27% Similarity=0.422 Sum_probs=96.2
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|++++..+. +||||++.++. ...||++++++.||.||
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------~DPYv~v~~~~-~~~kT~vi~~t~nP~Wn 63 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------SDPYCEVSMGS-QEHKTKVVSDTLNPKWN 63 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------cCcEEEEEECC-EeeeccccCCCCCCccC
Confidence 899999999999998886554 89999999977 45799999999999999
Q ss_pred eeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEeccccccc-----CCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 93 EHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKS-----GESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 93 E~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~-----g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|.|.|.+.... ..|.|+|||++.++ +++||++.+++.++.. ......|+++. + ...|+|++++.|
T Consensus 64 e~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~~g~i~l~~~~ 135 (136)
T cd08375 64 SSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VPTGEVVVKLDL 135 (136)
T ss_pred ceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---ccceeEEEEEEe
Confidence 99999997644 46999999999887 8999999999999986 33445677763 1 336999999876
No 43
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.1e-15 Score=142.72 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=86.1
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC------EEEEEeeeccCCC
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG------ATVARTRVISNCQ 87 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~------~~~~rT~vi~~~~ 87 (843)
.|+|+|++|++|+.++. +. +||||+|++.+ .++.+|+++.++.
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tl 49 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNW 49 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------CCCEEEEEEecCCCcccccEeeeEEecCCC
Confidence 48999999999997763 32 89999999842 2356999999999
Q ss_pred CCeeeeeEEEeecCCC----ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEccc
Q 003153 88 NPIWNEHFKIPLAHPV----SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILG 145 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~----~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 145 (843)
||+|||+|.|.+.... ..|.|.|+|++..+ +++||++.+|+.++..++..+.|++|..
T Consensus 50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 50 SPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred CCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9999999999997432 34899999999877 8899999999999999889999999953
No 44
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.64 E-value=6.8e-16 Score=147.37 Aligned_cols=98 Identities=32% Similarity=0.579 Sum_probs=89.5
Q ss_pred EEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCC
Q 003153 9 VYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQN 88 (843)
Q Consensus 9 ~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~n 88 (843)
.++.|.|+|.|++|.+|...|..++ |||||.+.+++++. ||+++.++.|
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s------------------------------SDPyVVl~lg~q~l-kT~~v~~n~N 50 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS------------------------------SDPYVVLELGNQKL-KTRVVYKNLN 50 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC------------------------------CCCeEEEEECCeee-eeeeecCCCC
Confidence 3578999999999999998887553 99999999999665 9999999999
Q ss_pred CeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCce
Q 003153 89 PIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESI 137 (843)
Q Consensus 89 P~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~ 137 (843)
|+|||.|.|.+.++...|+++|||+|.++ ++++|.+.||+..+.+.+..
T Consensus 51 PeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 51 PEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred CcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 99999999999999999999999999998 89999999999999876554
No 45
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=3.1e-15 Score=141.95 Aligned_cols=103 Identities=32% Similarity=0.531 Sum_probs=91.2
Q ss_pred CCcEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceee
Q 003153 64 SDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISD 139 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~ 139 (843)
+||||+|.+.+. ..+|++++++.||+|||+|.|.+.+. ...|.|+|||++..+ +++||++.++++++..+.....
T Consensus 15 ~Dpyv~v~~~~~-~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGV-KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCE-eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 899999999885 46999999999999999999999764 457999999999886 7999999999999999888999
Q ss_pred EEEcccCCCCCCCCcceEEEEEEEEeccCC
Q 003153 140 WFPILGLYGKPPKSETAVFMEMRFLPCEEN 169 (843)
Q Consensus 140 w~~L~~~~~~~~~~~g~l~l~l~~~~~~~~ 169 (843)
|++|.+..+++ ..|+|+++++|.|...+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99998776664 36899999999997753
No 46
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.64 E-value=9.5e-16 Score=141.64 Aligned_cols=101 Identities=33% Similarity=0.601 Sum_probs=87.8
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee-ee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW-NE 93 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W-nE 93 (843)
|.|+|++|++|++++.... .+||||+|.+++ .++||++++++.||.| ||
T Consensus 1 l~V~v~~a~~L~~~d~~~~-----------------------------~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne 50 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSD-----------------------------LTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSE 50 (110)
T ss_pred CEEEEEEEECCCccccCCC-----------------------------CCCceEEEEECC-eeEecceecCCCCCcccCc
Confidence 6899999999998874221 289999999988 6779999999999999 99
Q ss_pred eEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEeccccccc---CCceeeEEEccc
Q 003153 94 HFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKS---GESISDWFPILG 145 (843)
Q Consensus 94 ~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~ 145 (843)
.|.|.+.+. ...|.|+|||++.++ +++||++.+++.++.. +..++.||+|.+
T Consensus 51 ~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 51 WFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999764 357999999999987 7999999999999987 556889999975
No 47
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.64 E-value=9.7e-16 Score=141.16 Aligned_cols=99 Identities=17% Similarity=0.358 Sum_probs=84.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC---EEEEEeeeccCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG---ATVARTRVISNCQN 88 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~---~~~~rT~vi~~~~n 88 (843)
.|.|+|+|++|++|+ + .+ ++||||+|++.. ..+.+|++++++.|
T Consensus 13 ~~~L~V~vikA~~L~-~--~g------------------------------~sDPYVKv~L~~~~k~~k~kT~v~rktln 59 (118)
T cd08677 13 KAELHVNILEAENIS-V--DA------------------------------GCECYISGCVSVSEGQKEAQTALKKLALH 59 (118)
T ss_pred CCEEEEEEEEecCCC-C--CC------------------------------CCCeEEEEEEcCCcCccEEEcceecCCCC
Confidence 699999999999998 2 22 289999999964 24669999999999
Q ss_pred CeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEc
Q 003153 89 PIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 89 P~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
|+|||+|.|.++.. ...|.|+|+|.|.++ +++||++.+++.++..+...+.|-+|
T Consensus 60 PvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 60 TQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999763 346999999999998 89999999999998767677788654
No 48
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=1.8e-15 Score=145.77 Aligned_cols=105 Identities=18% Similarity=0.373 Sum_probs=89.8
Q ss_pred eeEEEEEEEEeeCCCCCC-CchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMD-LVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|+.++ ..+. +||||++++.+. ...||++++++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~------------------------------sDPYVKv~Llp~~~~~~k~KT~v~kkt 77 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVL------------------------------PAPYVKVYLLEGKKCIAKKKTKIARKT 77 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCC------------------------------cCCeEEEEEECCCccccceeceecCCC
Confidence 699999999999998764 2332 899999999642 36699999999
Q ss_pred CCCeeeeeEEEeecCCCceEEEEEE-eCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 87 QNPIWNEHFKIPLAHPVSQIEFYVK-DNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~~~l~~~V~-d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
.||+|||+|.|.+......|.|+|| |.+.++ +++||.+.|+++.+..+.....||+|.+.
T Consensus 78 lnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 78 LDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 9999999999999855567999999 567765 79999999999999878888999999755
No 49
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.63 E-value=2.4e-15 Score=137.77 Aligned_cols=99 Identities=25% Similarity=0.498 Sum_probs=86.3
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|.|+|++|++|++.+..+. +||||+|.+++ ...||+++.++.||+|||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~ 50 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------PSPYVELTVGK-TTQKSKVKERTNNPVWEEG 50 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------CCcEEEEEECC-EEEeCccccCCCCCcccce
Confidence 7899999999998765443 89999999998 6679999999999999999
Q ss_pred EEEeecCC-CceEEEEEEeCCCCCCcceeEEEecccccccCC--ceeeEEEcccC
Q 003153 95 FKIPLAHP-VSQIEFYVKDNDVFGADLIGVATIPAARIKSGE--SISDWFPILGL 146 (843)
Q Consensus 95 f~~~v~~~-~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~--~~~~w~~L~~~ 146 (843)
|.|.+.++ ...|.|+|+|.+. +++||++.+++.++..+. ..+.||+|.+.
T Consensus 51 f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 51 FTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999874 4579999999887 889999999999998643 67899999643
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=3.3e-15 Score=141.15 Aligned_cols=103 Identities=32% Similarity=0.511 Sum_probs=90.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP 89 (843)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.||++++++.||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP 64 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGT------------------------------SDPYVKVYLLPDKKKKFETKVHRKTLNP 64 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCCEEEEEEEcCCCCceecccCcCCCCC
Confidence 4899999999999998876553 89999999864 356799999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
+|||+|.|.+... ...|.|+|||++.++ +++||++.++++++..+...++|++|.
T Consensus 65 ~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 65 VFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred ceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999999998652 357999999999887 799999999999998888899999984
No 51
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.61 E-value=4.8e-15 Score=139.79 Aligned_cols=116 Identities=22% Similarity=0.358 Sum_probs=95.1
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|+|+|++|++|+.++.++. +||||+|++.+..++||++++++.||.|||+
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEH 51 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------CCcEEEEEECCccceEccEEcCCCCCcccce
Confidence 7999999999998876554 8999999998667789999999999999999
Q ss_pred EEEeecCCCceEEEEEEeCCCCC---CcceeEEEecccccccCC-ceeeEEEcccCCCCC-CCCcceEEEEE
Q 003153 95 FKIPLAHPVSQIEFYVKDNDVFG---ADLIGVATIPAARIKSGE-SISDWFPILGLYGKP-PKSETAVFMEM 161 (843)
Q Consensus 95 f~~~v~~~~~~l~~~V~d~d~~~---~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~~~~-~~~~g~l~l~l 161 (843)
|.|++.. ...|.|+|||.+.++ +++||.+.+++.++.... ....||+|....... ....|+|.+++
T Consensus 52 f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 52 FDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999975 678999999998876 479999999999987533 346799996554322 13367777764
No 52
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.61 E-value=3e-15 Score=141.43 Aligned_cols=103 Identities=27% Similarity=0.478 Sum_probs=90.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CEEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~~~~rT~vi~~~~nP 89 (843)
.|.|.|+|++|++|+.++..+. +||||+|.+. +..++||++++++.||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P 64 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------ADPYCKVRLLPDRSNTKQSKIHKKTLNP 64 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCCeEEEEEecCCCCcEeCceEcCCCCC
Confidence 4899999999999998876553 8999999994 3567899999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
.|||+|.|.+... ...|.|+|||.+.++ +++||.+.++++++..++..+.|++|.
T Consensus 65 ~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 65 EFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999998763 356999999999887 899999999999998888889999985
No 53
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=4.8e-15 Score=139.11 Aligned_cols=104 Identities=30% Similarity=0.445 Sum_probs=93.8
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|++.+..+. +||||+|.+.+..+++|+++.++.||.||
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wn 50 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------IDPYVRVLVNGIVKGRTVTISNTLNPVWD 50 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------cCCEEEEEECCEEeeceeEECCCcCCccC
Confidence 789999999999998876554 89999999988778899999999999999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCC
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLY 147 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~ 147 (843)
|.|.|++.+....|.|+|||.+.++ +++||.+.+++.++..+ ..+.||.|++..
T Consensus 51 e~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 51 EVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred ceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999887788999999999887 78999999999999876 668999998664
No 54
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.61 E-value=6.5e-15 Score=137.00 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=86.3
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|+..+ +.||||.|.+++ ...+|++++++ ||.||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------~~dPYV~Ik~g~-~k~kT~v~~~~-nP~Wn 46 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------KFNTYVTLKVQN-VKSTTIAVRGS-QPCWE 46 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------CCCCeEEEEECC-EEeEeeECCCC-CCcee
Confidence 68999999999997543 269999999988 45699999884 99999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccccCCce--eeEEEcccC
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESI--SDWFPILGL 146 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~--~~w~~L~~~ 146 (843)
|.|.|.+......|.|+|||++.++|++||++.|||.++..+... ..||+|...
T Consensus 47 E~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 47 QDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 999999988777899999999988899999999999999876555 689999643
No 55
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=3.5e-15 Score=141.19 Aligned_cols=113 Identities=24% Similarity=0.334 Sum_probs=96.1
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeecc-CCCCCeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVIS-NCQNPIWN 92 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~-~~~nP~Wn 92 (843)
+|+|+|++|++|++.+..+. +||||+|++.+....+|+++. ++.||.||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wn 50 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWN 50 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------CceEEEEEECCCcccccccccCCCCCCCCC
Confidence 58999999999998775543 899999999885566999986 48999999
Q ss_pred eeEEEeecCC-----CceEEEEEEeCCCCC-CcceeEEEecccccccCCce-----eeEEEcccCCCCCCCCcceEEE
Q 003153 93 EHFKIPLAHP-----VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESI-----SDWFPILGLYGKPPKSETAVFM 159 (843)
Q Consensus 93 E~f~~~v~~~-----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~-----~~w~~L~~~~~~~~~~~g~l~l 159 (843)
|.|.|.+... ...|.|+|+|++.++ +++||.+.+++.++..+... ..||+|.+.+|++ .|.|++
T Consensus 51 e~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~---~G~~~~ 125 (125)
T cd04051 51 ETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP---QGVLNF 125 (125)
T ss_pred CEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc---CeEEeC
Confidence 9999999876 467999999998865 89999999999999876653 6899999887765 788764
No 56
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.60 E-value=9e-15 Score=138.78 Aligned_cols=114 Identities=28% Similarity=0.464 Sum_probs=95.6
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|+|+|++|++|+.+|..+. +||||+|.+++ ...+|+++.++.||.|||
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne 50 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------SDPYVTVQVGK-TKKRTKTIPQNLNPVWNE 50 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------cCcEEEEEECC-EeeecceecCCCCCccce
Confidence 68999999999998886554 89999999976 467999999999999999
Q ss_pred eEEEeecCCCceEEEEEEeCCCC------------CCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEE
Q 003153 94 HFKIPLAHPVSQIEFYVKDNDVF------------GADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEM 161 (843)
Q Consensus 94 ~f~~~v~~~~~~l~~~V~d~d~~------------~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l 161 (843)
.|.|.+..+...|.|+|||+|.. ++++||.+.+++.++.. ..+.|++|....++. +..|+|.+++
T Consensus 51 ~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 51 KFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEEC
Confidence 99999977667899999999852 37999999999998853 346899998665443 5689998864
No 57
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.60 E-value=4.8e-15 Score=140.10 Aligned_cols=104 Identities=25% Similarity=0.430 Sum_probs=88.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+.++.... .+||||+|++.+ ....||++++++.
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~-----------------------------~~DpyVkv~l~p~~~~~~~~kT~v~~~t~ 64 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKK-----------------------------RSNPYVKTYLLPDKSRQSKRKTSIKRNTT 64 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCC-----------------------------CCCcEEEEEEEcCCccccceEeeeeeCCC
Confidence 5899999999999998764211 289999999853 2356999999999
Q ss_pred CCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 88 NPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 88 nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
||+|||+|.|.+.. ....|.|+|||.+.++ +++||.+.+++.++...+..+.|+||.
T Consensus 65 nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 65 NPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999999865 2446999999999887 799999999999998888899999983
No 58
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.7e-14 Score=136.69 Aligned_cols=115 Identities=25% Similarity=0.364 Sum_probs=96.4
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCCee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNPIW 91 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP~W 91 (843)
.|+|+|++|++|+.++..+. +||||+|.+.+ ...+||+++.++.||.|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~W 51 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRW 51 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------CCceEEEEECCCCeeeecccEecCCCCCcc
Confidence 58999999999998876543 89999999865 35689999999999999
Q ss_pred eeeEEEeecCC-CceEEEEEEeCCCCC-CcceeEEEeccccccc---CCceeeEEEcccCCCCCCCCcceEEEEEEEEec
Q 003153 92 NEHFKIPLAHP-VSQIEFYVKDNDVFG-ADLIGVATIPAARIKS---GESISDWFPILGLYGKPPKSETAVFMEMRFLPC 166 (843)
Q Consensus 92 nE~f~~~v~~~-~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~ 166 (843)
||+|.|.+.+. ...|.|+|||++..+ +++||++.+++..+.. +...+.|++|. +.|+|++.+.+...
T Consensus 52 ne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~~~ 123 (126)
T cd04043 52 DEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSMEGE 123 (126)
T ss_pred cceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEeee
Confidence 99999999874 456999999999886 8999999999987643 44667899994 25889988887654
No 59
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.59 E-value=4.5e-15 Score=140.39 Aligned_cols=103 Identities=21% Similarity=0.435 Sum_probs=88.1
Q ss_pred eeEEEEEEEEeeCCCCCCCc-hhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLV-TARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
.+.|.|+|++|++|+.++.. + .+||||+|++.+ ..+.||++++++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g------------------------------~~dpyVkv~l~p~~~~~~~~kT~v~~~t 63 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQ------------------------------RSDPYVKTYLLPDKSNRGKRKTSVKKKT 63 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCC------------------------------CCCcEEEEEEEcCCCccccccCccCcCC
Confidence 37899999999999988753 3 289999999953 234699999999
Q ss_pred CCCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 87 QNPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
.||+|||+|.|.+.. ....|.|+|||.+.++ +++||.+.|++.++..+.....||+|+
T Consensus 64 ~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 64 LNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 999999999999864 2356999999999887 799999999999998777778999983
No 60
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.59 E-value=2.3e-13 Score=146.37 Aligned_cols=337 Identities=17% Similarity=0.213 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHhccceEEEEE--Eeece-eeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccc
Q 003153 226 RCWEDICHAILEAHHLVYIVG--WSVFH-KVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFIN 302 (843)
Q Consensus 226 ~~~~~l~~aI~~Ak~~I~I~~--w~~~~-~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~ 302 (843)
..+++.++.|..|+++++|+. |.+.. ++++. +.. ...+..+..+|.+++.+||.|||.. ..... ..
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~-dsS----t~~G~~vy~~L~~~~~~gIsiriA~-~~p~~-~~---- 140 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTGKDTGVV-DSS----TQYGEQVYNTLLALAKSGVKIRIAQ-SYPSG-GP---- 140 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeeccccceeccC-CCc----chHHHHHHHHHHHhccCCeEEEEEe-ecCCC-CC----
Confidence 345889999999999999984 43322 12111 111 0124688899999999999999987 33211 10
Q ss_pred cccccCCChHHHHhhhcCCC-cEEEeC--CCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCC
Q 003153 303 TAGVMQTHDEETRKFFKHSS-VHCVLS--PRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCD 379 (843)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~~-v~v~~~--~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 379 (843)
+..-...|...| ++++-- +++++ -.-.|-|+.|||++ .-|+||.|+.+
T Consensus 141 --------~~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW 191 (456)
T KOG3603|consen 141 --------PNADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW 191 (456)
T ss_pred --------CcccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch
Confidence 111233455556 555421 22221 12479999999998 99999999999
Q ss_pred cccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeC--hHHHHHHHHHHHHHhhhcccccccccccccc
Q 003153 380 GRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEG--PAAYDVLTNFEQRWRKATKWSEFGQRFKRVT 457 (843)
Q Consensus 380 ~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G--paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~ 457 (843)
|--|+- -.+++.++. ..|.||.+.|++.|....... ...+
T Consensus 192 -rSlTqv-------------------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~~s------~~p~ 233 (456)
T KOG3603|consen 192 -RSLTQV-------------------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNAKS------LIPK 233 (456)
T ss_pred -hhccce-------------------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCCCc------cCCC
Confidence 543321 145555554 378999999999998654331 0112
Q ss_pred cccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhH
Q 003153 458 RWHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKS 537 (843)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~s 537 (843)
+|....-.... . ..| .-...++ .....++..|- ..|- .+|. .-
T Consensus 234 ~wp~~~st~~N-------~--~~p------~~~~~dg-~~~~~y~saSP-----~~~~-----------~~gr-----t~ 276 (456)
T KOG3603|consen 234 KWPNCYSTHYN-------K--PLP------MKIAVDG-TPATPYISASP-----PPLN-----------PSGR-----TW 276 (456)
T ss_pred CCccccccccc-------c--cCc------ceeecCC-CCcceEEccCC-----CCCC-----------CCCC-----ch
Confidence 23221110000 0 000 0000011 11223333221 1111 0121 12
Q ss_pred HHHHHHHHHHhccceEEEe-ecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhH
Q 003153 538 IQTAYIQAIRSAQHFIYIE-NQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSASV 616 (843)
Q Consensus 538 I~~ayl~aI~~Ak~~IYIE-nQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~ 616 (843)
=.+|+++.|..|+.||||. .+||-+..+. +. .+-. +|-.+|.+|.- +||+|++++..|++..+. +
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~----k~---~~fw--~iDdaiR~aa~--RgV~vR~lvs~~~~~~~~---m 342 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYS----KN---HRFW--EIDDAIRRAAV--RGVKVRLLVSCWKHSEPS---M 342 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheee----cC---cchh--hhhHHHHHHhh--cceEEEEEEeccCCCCch---H
Confidence 3569999999999999998 5676443332 11 1111 34444444433 669999999998765432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCC--ccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEe
Q 003153 617 QEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGN--REEVPQGEPGLNNQTSNGELISASQKFQRFMIYVH 694 (843)
Q Consensus 617 ~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 694 (843)
..+| ++++ .|...+....++ ++||-... .+.+ | . .| -.|
T Consensus 343 ~~~L----~SLq----~l~~~~~~~~iq-------vk~f~VP~~~~~~i------p---------~-----~R----v~H 383 (456)
T KOG3603|consen 343 FRFL----RSLQ----DLSDPLENGSIQ-------VKFFIVPQTNIEKI------P---------F-----AR----VNH 383 (456)
T ss_pred HHHH----HHHH----HhcCccccCceE-------EEEEEeCCCccccC------c---------h-----hh----hcc
Confidence 1111 1111 111111111121 45553211 1110 0 0 11 489
Q ss_pred eeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCC
Q 003153 695 AKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPH 733 (843)
Q Consensus 695 sKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~ 733 (843)
+|.||-++ .++||++||..--+..+ .-++++|.++.
T Consensus 384 nKymVTe~-aayIGTSNws~dYf~~T--aG~~ivv~q~~ 419 (456)
T KOG3603|consen 384 NKYMVTES-AAYIGTSNWSGDYFTST--AGTAIVVRQTP 419 (456)
T ss_pred ceeEEeec-ceeeeccCCCccceecc--CceEEEEecCC
Confidence 99999988 79999999999999866 78899997763
No 61
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.8e-14 Score=134.51 Aligned_cols=112 Identities=31% Similarity=0.609 Sum_probs=90.0
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|.|+|++|++|+.. +. +||||.|++.+..+++|+++++ .||.|||+
T Consensus 2 L~v~vi~a~~l~~~---~~------------------------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~ 47 (117)
T cd08383 2 LRLRILEAKNLPSK---GT------------------------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEE 47 (117)
T ss_pred eEEEEEEecCCCcC---CC------------------------------CCceEEEEECCEEeEecceEEC-CCCcccce
Confidence 78999999999865 22 8999999999877789999999 99999999
Q ss_pred EEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 95 FKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 95 f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
|.|.+.+. ...|.|.++|.+..+ +..+|. +++..+..+...+.||+|.+..++. ...|+|+|+++|
T Consensus 48 f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 48 FVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEecCCccccEEEEEEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 99999873 345788889887654 455555 5555666678889999998765533 458999999986
No 62
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.3e-14 Score=134.31 Aligned_cols=101 Identities=24% Similarity=0.409 Sum_probs=87.1
Q ss_pred CCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCCC-ceEEEEEEeCCCCCCcceeEEEeccccccc-CCce
Q 003153 60 KMITSDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPV-SQIEFYVKDNDVFGADLIGVATIPAARIKS-GESI 137 (843)
Q Consensus 60 ~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~-~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~-g~~~ 137 (843)
+.+.+||||+|.+++...++|++++++.||.|||.|.|.+.+.. ..|.|.|+|.+.+++++||.+.+++.++.. +...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 34458999999999877889999999999999999999998754 569999999998888999999999999864 4456
Q ss_pred eeEEEcccCCCCCCCCcceEEEEEEEEec
Q 003153 138 SDWFPILGLYGKPPKSETAVFMEMRFLPC 166 (843)
Q Consensus 138 ~~w~~L~~~~~~~~~~~g~l~l~l~~~~~ 166 (843)
+.||+|.+ ...|+|+++++|.|+
T Consensus 89 ~~w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 89 QQWFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred ceeEECCC------CCCCEEEEEEEEecC
Confidence 89999964 237999999999985
No 63
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=2.8e-14 Score=136.93 Aligned_cols=118 Identities=22% Similarity=0.377 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|+|+|++|++|+++|..+. +||||+|.+.+ ...||++++++.||.|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne 50 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------SDPFARVSFLN-QSQETEVIKETLSPTWDQ 50 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------CCCEEEEEECC-eeeEeeeEcCCCCCccCc
Confidence 48999999999999887664 89999999987 456999999999999999
Q ss_pred eEEEeecCC----------CceEEEEEEeCCCCC-CcceeEEEe-ccccccc---CCceeeEEEcccCCCCCCCCcceEE
Q 003153 94 HFKIPLAHP----------VSQIEFYVKDNDVFG-ADLIGVATI-PAARIKS---GESISDWFPILGLYGKPPKSETAVF 158 (843)
Q Consensus 94 ~f~~~v~~~----------~~~l~~~V~d~d~~~-~~~IG~~~i-pl~~l~~---g~~~~~w~~L~~~~~~~~~~~g~l~ 158 (843)
.|.|.+... ...|.|+|||.+..+ +++||++.+ |+..+.. +.....|++|... + ...|+|.
T Consensus 51 ~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~-~---~~~Geil 126 (135)
T cd04017 51 TLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG-G---QSAGELL 126 (135)
T ss_pred EEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC-C---Cchhhee
Confidence 999975321 245899999999887 799999997 5544442 4567799999633 3 2479999
Q ss_pred EEEEEEec
Q 003153 159 MEMRFLPC 166 (843)
Q Consensus 159 l~l~~~~~ 166 (843)
|++++.++
T Consensus 127 ~~~~~~~~ 134 (135)
T cd04017 127 AAFELIEV 134 (135)
T ss_pred EEeEEEEe
Confidence 99998875
No 64
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=9.2e-15 Score=141.67 Aligned_cols=104 Identities=22% Similarity=0.325 Sum_probs=85.9
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCCCCC
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNCQNP 89 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~~nP 89 (843)
.|.|+|++|++|+. ..+ .+||||+|.+.+. ...||++++++.||
T Consensus 1 kL~V~Vi~ArnL~~--~~g------------------------------~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP 48 (148)
T cd04010 1 KLSVRVIECSDLAL--KNG------------------------------TCDPYASVTLIYSNKKQDTKRTKVKKKTNNP 48 (148)
T ss_pred CEEEEEEeCcCCCC--CCC------------------------------CCCceEEEEEeCCcccCcccCCccEeCCCCC
Confidence 38999999999986 222 2899999999762 35699999999999
Q ss_pred eeeeeEEEeecC----------------CCceEEEEEEeCCCCC-CcceeEEEecccccccC-CceeeEEEcccCCCC
Q 003153 90 IWNEHFKIPLAH----------------PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG-ESISDWFPILGLYGK 149 (843)
Q Consensus 90 ~WnE~f~~~v~~----------------~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g-~~~~~w~~L~~~~~~ 149 (843)
+|||+|.|.+.. ....|.|.|||.+.++ +++||++.||+..+..+ .....||+|.....+
T Consensus 49 ~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 49 QFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred ccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 999999999841 1235899999999876 89999999999999886 677899999766443
No 65
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.58 E-value=7.9e-15 Score=135.75 Aligned_cols=99 Identities=27% Similarity=0.443 Sum_probs=84.9
Q ss_pred eEEEEEEEEeeCCCCCCCc-hhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCC
Q 003153 13 GDLDLKIVEARRLPNMDLV-TARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNP 89 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP 89 (843)
|+|.|+|++|++|++++.. +. +||||+|.+.+ ..+++|++++++.||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP 50 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------SDPYVTASFAKFGKPLYSTRIIRKDLNP 50 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------CCccEEEEEccCCCccEeeeeECCCCCC
Confidence 7899999999999988865 43 89999999854 356799999999999
Q ss_pred eeeeeEEEeecCC----CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 90 IWNEHFKIPLAHP----VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~v~~~----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++.. ...|+++.
T Consensus 51 ~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 51 VWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred ccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 9999999988653 357999999999987 8999999999999983 34588874
No 66
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.57 E-value=1.2e-14 Score=133.56 Aligned_cols=97 Identities=24% Similarity=0.397 Sum_probs=81.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|+..+.... ...++||||+|++++ .++||++++++.||+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWn 53 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------TGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFN 53 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------CCCccCceEEEEECC-EeEeeeeecCCCCCccc
Confidence 789999999999998764321 011389999999976 56799999999999999
Q ss_pred eeEEEeecCCC--ceEEEEEEeCCCCC-CcceeEEEecccccccCCc
Q 003153 93 EHFKIPLAHPV--SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES 136 (843)
Q Consensus 93 E~f~~~v~~~~--~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~ 136 (843)
|.|.|++.+.. ..|.|+|||++..+ +++||++.++++++..+..
T Consensus 54 e~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 54 ERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred ceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 99999986533 36899999999887 8999999999999987655
No 67
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2.4e-14 Score=133.26 Aligned_cols=111 Identities=33% Similarity=0.534 Sum_probs=94.8
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|+|+|++|++|++.+..+. +||||+|.+.+..+++|+++.++.||.|||+
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~ 50 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNES 50 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------CCCeEEEEECCCcceeeceecCCCCCccccc
Confidence 5799999999998775443 8999999998777789999999999999999
Q ss_pred EEEeecCC-CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEE
Q 003153 95 FKIPLAHP-VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVF 158 (843)
Q Consensus 95 f~~~v~~~-~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~ 158 (843)
|.|.+... ...+.|+|||++..+ +++||++.+++.++..+...+.|++|....+.. .|.|.
T Consensus 51 f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~---~~~~~ 113 (115)
T cd04040 51 FEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGK---LGAVF 113 (115)
T ss_pred EEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCcc---CceEE
Confidence 99999763 457999999999886 899999999999999888889999997655433 45543
No 68
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.56 E-value=1.5e-14 Score=136.72 Aligned_cols=102 Identities=28% Similarity=0.464 Sum_probs=85.4
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.||++++++.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 64 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------RNPYVKVYLLPDRSEKSKRRTKTVKKTL 64 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------CCCEEEEEEccCCCccccccccccCCCC
Confidence 4889999999999998876553 89999999975 3567999999999
Q ss_pred CCeeeeeEEEeecC----CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 88 NPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 88 nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
||+|||+|.|.+.. ....|.|+|||.+.++ +++||.+.+++++... .....||+|.
T Consensus 65 nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 65 NPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred CCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 99999999999754 2457999999999887 7999999999998433 2346899983
No 69
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=1.2e-14 Score=141.16 Aligned_cols=112 Identities=31% Similarity=0.458 Sum_probs=84.9
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
+|.|+|++|++|+.+|..+. .+++ ++.-..+.+.+||||+|.+++.++ ||++++++.||+|||
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~--------------~~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE 63 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVK--------------KAFLGEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNE 63 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--ccce--------------eccccCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcce
Confidence 47899999999999985431 0001 011122344589999999999654 999999999999999
Q ss_pred eEEEeecC--CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEc
Q 003153 94 HFKIPLAH--PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 94 ~f~~~v~~--~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
+|.|++.. ....|.|+|||.|..+ +++||.+.+++.++.... .++|+|+
T Consensus 64 ~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~-~~~~lp~ 115 (151)
T cd04018 64 QIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG-DEGFLPT 115 (151)
T ss_pred EEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC-ccccCCc
Confidence 99998743 3457999999999885 899999999999987643 3334333
No 70
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.56 E-value=1.6e-14 Score=137.07 Aligned_cols=101 Identities=25% Similarity=0.490 Sum_probs=88.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCCC
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQN 88 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~n 88 (843)
+.|.|+|++|++|++++..+. +||||+|.+.+ ...+||++++++.|
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~n 65 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLN 65 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------CCceEEEEEEcCCCCCceEecccccCCCC
Confidence 889999999999998876553 89999999964 35679999999999
Q ss_pred CeeeeeEEEeecCC---CceEEEEEEeCCCC--C-CcceeEEEecccccccCCceeeEEEc
Q 003153 89 PIWNEHFKIPLAHP---VSQIEFYVKDNDVF--G-ADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 89 P~WnE~f~~~v~~~---~~~l~~~V~d~d~~--~-~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
|+|||+|.|.+... ...|.|+|||.+.+ + +++||.+.+++.++..+...+.||+|
T Consensus 66 P~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 66 PVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99999999998542 35799999999875 4 79999999999999888888999998
No 71
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.56 E-value=1.2e-14 Score=136.65 Aligned_cols=102 Identities=23% Similarity=0.402 Sum_probs=86.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE-----EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA-----TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~-----~~~rT~vi~~~ 86 (843)
.+.|.|+|++|+||++++..+. +||||++++.+. ...||++++++
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~------------------------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t 62 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN------------------------------SKVYVRVALLPCSSSTSCLFRTKALEDQ 62 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC------------------------------CCeEEEEEEccCCCCCCceEEcCccCCC
Confidence 5889999999999998864432 899999998742 36799999999
Q ss_pred CCCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEeccccccc-CCceeeEEEc
Q 003153 87 QNPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKS-GESISDWFPI 143 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~-g~~~~~w~~L 143 (843)
.||+|||+|.|+++. ....|.|+||+.+.++ +++||.+.|++.++.. +.....||+|
T Consensus 63 ~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 63 DKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999876 3457999999999887 7999999999999954 4457789876
No 72
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.56 E-value=4.9e-14 Score=136.82 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=82.1
Q ss_pred CCcEEEEEE----CCEEEEEeeeccCCCCCeeeeeEEEeecCC---------CceEEEEEEeCCCC--CCcceeEEEecc
Q 003153 64 SDPYVTVCL----GGATVARTRVISNCQNPIWNEHFKIPLAHP---------VSQIEFYVKDNDVF--GADLIGVATIPA 128 (843)
Q Consensus 64 ~DpYv~v~l----~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~---------~~~l~~~V~d~d~~--~~~~IG~~~ipl 128 (843)
+||||++++ .+....||++++++.||+|||+|.|.+... ...|.|+|||++.+ +|++||++.+++
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 334677999999999999999999999654 23599999999886 389999999999
Q ss_pred cccccCCceeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 129 ARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 129 ~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
+.+.....+..|++|.+ +.++ .+|+|+++++..
T Consensus 105 ~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLR 137 (155)
T ss_pred ccccccCcceEEEEhhh-CCCC--cCCEEEEEEEec
Confidence 99988777888999974 3343 489999888754
No 73
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.55 E-value=1.6e-14 Score=137.00 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=86.4
Q ss_pred eeEEEEEEEEeeCCCCCCCc-hhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLV-TARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~ 86 (843)
.+.|.|+|++|++|+.++.. +. +||||++++.+. ...||++++++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------~dpYVkv~llp~~~~~~k~kT~v~~~t 63 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------CHPYVKVCLLPDKSHNSKRKTAVKKGT 63 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------CCeEEEEEEEeCCcccceeecccccCC
Confidence 48899999999999988753 32 899999999642 35699999999
Q ss_pred CCCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEeccccccc---CCceeeEEEc
Q 003153 87 QNPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKS---GESISDWFPI 143 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L 143 (843)
.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|++.++.. +.....||+|
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999998653 457999999999876 7999999999999854 3456789998
No 74
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.55 E-value=2.3e-14 Score=135.08 Aligned_cols=102 Identities=30% Similarity=0.547 Sum_probs=87.8
Q ss_pred eeEEEEEEEEeeCCCCCC-CchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMD-LVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|+.++ ..+. +||||+|++.+. ..+||++++++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 62 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR------------------------------SNPYVKVYLLPDKSKQSKRKTSVKKNT 62 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC------------------------------CCcEEEEEEecCCCcCceeeccccCCC
Confidence 489999999999999877 3332 899999998531 45799999999
Q ss_pred CCCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEc
Q 003153 87 QNPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+.||+|
T Consensus 63 ~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 63 TNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999998652 457999999999887 79999999999999888888999987
No 75
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.54 E-value=3.6e-14 Score=134.01 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=90.5
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccC-CCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISN-CQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~-~~nP~W 91 (843)
|.|.|+|++|++|++++..+. +||||+|.+.+. ..+|+++.+ +.||.|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~-~~~T~~~~~~t~nP~W 49 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------IDPYVIIQCRTQ-ERKSKVAKGDGRNPEW 49 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------cCceEEEEECCE-eeeeeEcCCCCCCCcc
Confidence 789999999999998876554 899999999874 458998885 899999
Q ss_pred eeeEEEeecCC----CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 92 NEHFKIPLAHP----VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 92 nE~f~~~v~~~----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
||+|.|.+..+ ...|.|+|+|.+.++ +++||.+.+++.++..+...+.|++|...
T Consensus 50 ne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 50 NEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred cceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999876 457999999999886 89999999999999988888999999643
No 76
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=4.4e-14 Score=133.62 Aligned_cols=103 Identities=30% Similarity=0.433 Sum_probs=88.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CEEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~~~~rT~vi~~~~nP 89 (843)
.+.|.|+|++|++|+.++..+. +||||+|.+. +....||++++++.||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P 64 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------SDPFVKIYLLPDKKHKLETKVKRKNLNP 64 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------CCceEEEEECCCCCcceeeeeecCCCCC
Confidence 4789999999999998876553 8999999994 3456799999999999
Q ss_pred eeeeeEEEeecC----CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 90 IWNEHFKIPLAH----PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
.|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.++..+...+.|++|.
T Consensus 65 ~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 65 HWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred ccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999997532 2245999999999887 799999999999999888899999984
No 77
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=6e-14 Score=133.20 Aligned_cols=104 Identities=30% Similarity=0.400 Sum_probs=85.8
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP 89 (843)
.+.|.|+|++|++|+.++..+. .+||||+|.+.+ ..+.||++++++.||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~-----------------------------~~DpyV~v~l~~~~~~~~kT~v~~~t~nP 65 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSG-----------------------------TSDPYVKLQLLPEKEHKVKTRVLRKTRNP 65 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCC-----------------------------CcCCEEEEEEeCCcCceeeccEEcCCCCC
Confidence 4789999999999998775411 289999999863 346699999999999
Q ss_pred eeeeeEEEe-ecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccC--CceeeEEEcc
Q 003153 90 IWNEHFKIP-LAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG--ESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~-v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g--~~~~~w~~L~ 144 (843)
+|||+|.|. +.. ....|.|+|||++.++ +++||++.+++.++..+ +....|++|.
T Consensus 66 ~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 66 VYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred ceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999994 432 2346999999999887 89999999999999654 6788999984
No 78
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.54 E-value=1.1e-14 Score=139.25 Aligned_cols=110 Identities=23% Similarity=0.298 Sum_probs=91.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|+||+.++.... .++||||+|++... .+.||++++++.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~----------------------------~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~ 65 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLL----------------------------LGIDVSVKVTLKHQNAKLKKKQTKRAKHKI 65 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC----------------------------CCCCeEEEEEEEcCCcccceeccceeeCCC
Confidence 5899999999999998874211 12899999998752 355999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPP 151 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~ 151 (843)
||+|||.|.|.+++. ...|.|+|+|.|.++ +++||++.+++.. .|...++|..++...+++.
T Consensus 66 nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 66 NPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred CCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 999999999999863 346999999999988 8999999999975 6778889999987777653
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.52 E-value=4.7e-14 Score=137.18 Aligned_cols=98 Identities=29% Similarity=0.522 Sum_probs=85.4
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----------------
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA---------------- 75 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~---------------- 75 (843)
.+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~~~~~~~~~~ 76 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGF------------------------------SDPYCMLGIVPASRERNSEKSKKRKSHR 76 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCC------------------------------CCceEEEEEccccccccccccccccccc
Confidence 4899999999999999887664 899999998631
Q ss_pred ------------EEEEeeeccCCCCCeeeeeEEEeecCC-CceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEE
Q 003153 76 ------------TVARTRVISNCQNPIWNEHFKIPLAHP-VSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFP 142 (843)
Q Consensus 76 ------------~~~rT~vi~~~~nP~WnE~f~~~v~~~-~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~ 142 (843)
.+++|+++.++.||.|||+|.|.+.+. ...|.|+|||++ +++||++.++++++.. ..++.||+
T Consensus 77 ~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~ 152 (153)
T cd08676 77 KKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFK 152 (153)
T ss_pred ccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEe
Confidence 347999999999999999999999764 457999999998 8999999999999984 45799998
Q ss_pred c
Q 003153 143 I 143 (843)
Q Consensus 143 L 143 (843)
|
T Consensus 153 L 153 (153)
T cd08676 153 L 153 (153)
T ss_pred C
Confidence 7
No 80
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.52 E-value=1.7e-14 Score=138.09 Aligned_cols=107 Identities=28% Similarity=0.385 Sum_probs=91.0
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|++++..+. +||||+|.+.+ ..+.+|++++++.
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~------------------------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~ 61 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY------------------------------SDPFVKLYLKPDAGKKSKHKTQVKKKTL 61 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC------------------------------CCcEEEEEEEcCCCccCCceeeeEeccC
Confidence 4899999999999998886554 89999999864 2467999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+... ...|.|+|||.+..+ +++||.+.+++.. .|+..++|++++...+++
T Consensus 62 nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 62 NPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 999999999998753 346999999999876 7999999999985 466778999998776655
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.51 E-value=2.4e-14 Score=137.60 Aligned_cols=107 Identities=28% Similarity=0.434 Sum_probs=90.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--E--EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--A--TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~--~~~rT~vi~~~~ 87 (843)
.+.|.|+|++|++|+.++..+. +||||+|.+.+ . ...||++++++.
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~ 63 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL------------------------------ADPYVKVNLYYGKKRISKKKTHVKKCTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------CCeEEEEEEEcCCceeeeEcCccccCCC
Confidence 5789999999999998876554 89999999853 2 346899999999
Q ss_pred CCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.. .+...+.|++|.+..|++
T Consensus 64 nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 64 NPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred CCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 99999999999865 3346899999999887 8999999999998 466778999998776665
No 82
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.51 E-value=9.3e-14 Score=130.94 Aligned_cols=103 Identities=25% Similarity=0.409 Sum_probs=88.7
Q ss_pred eeEEEEEEEEeeCCCCCC-CchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CEEEEEeeeccCCCC
Q 003153 12 HGDLDLKIVEARRLPNMD-LVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GATVARTRVISNCQN 88 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~~~~rT~vi~~~~n 88 (843)
.+.|.|+|++|++|++++ ..+. +||||+|++. +...++|++++++.|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------~dpyV~v~l~~~~~~~~~T~v~~~~~~ 62 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------CDPFVKVCLLPDERRSLQSKVKRKTQN 62 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------CCcEEEEEEeeCCCCceEeeeEcCCCC
Confidence 578999999999999887 3332 8999999984 235679999999999
Q ss_pred CeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 89 PIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 89 P~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
|+|||.|.|.+... ...|.|+|||.+..+ +++||++.++++++........|++|.
T Consensus 63 P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 63 PNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999999998653 346999999999887 799999999999999888888999984
No 83
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.50 E-value=2.7e-14 Score=136.66 Aligned_cols=107 Identities=28% Similarity=0.367 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--E--EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--A--TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~--~~~rT~vi~~~~ 87 (843)
.+.|.|+|++|++|+.++..+. +||||+|++.+ . ...||++++++.
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~ 63 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------ADPFVKVYLLQDGRKISKKKTSVKRDDT 63 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCeEEEEEEEeCCccccccCCccccCCC
Confidence 4789999999999998875543 89999999953 2 245899999999
Q ss_pred CCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||+|||+|.|.++. ....|.|+|+|+|.++ +++||++.|+... .|...++|..++...+++
T Consensus 64 nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 64 NPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKP 128 (136)
T ss_pred CCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCe
Confidence 99999999999875 3456999999999877 8999999998763 577788999998776665
No 84
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.50 E-value=2.1e-13 Score=136.75 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
.++++.+.++|.+|+++|+|+.|.+.+.. . . ....|.+.|.+++++||+|+||+++.... ..
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~-~-------~~~~l~~~L~~a~~rGv~V~il~~~~~~~-~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI---T-E-------YGPVILDALLAAARRGVKVRILVDEWSNT-DL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc---c-c-------cchHHHHHHHHHHHCCCEEEEEEcccccC-Cc------
Confidence 67899999999999999999999887532 0 0 23689999999999999999998544321 10
Q ss_pred cccCCChHHHHhhhcC---CCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcc
Q 003153 305 GVMQTHDEETRKFFKH---SSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGR 381 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~---~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 381 (843)
.........|.. .++++...+.... ....+|+|++|||++ ++++||.|+.+..
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 001233344443 3788765432210 134799999999998 9999999999955
Q ss_pred cCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh--HHHHHHHHHHHHHhhh
Q 003153 382 YDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP--AAYDVLTNFEQRWRKA 443 (843)
Q Consensus 382 ~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~ 443 (843)
+ ..++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 2467999999999 7999999999999963
No 85
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=1.5e-13 Score=127.22 Aligned_cols=97 Identities=24% Similarity=0.402 Sum_probs=83.0
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNE 93 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE 93 (843)
.|+|+|++|++|+. + .+||||+|.+++.+ .+|++++++.||.|||
T Consensus 5 ~l~V~v~~a~~L~~----~------------------------------~~dpyv~v~~~~~~-~kT~~~~~t~nP~wne 49 (111)
T cd04011 5 QVRVRVIEARQLVG----G------------------------------NIDPVVKVEVGGQK-KYTSVKKGTNCPFYNE 49 (111)
T ss_pred EEEEEEEEcccCCC----C------------------------------CCCCEEEEEECCEe-eeeeEEeccCCCcccc
Confidence 58999999999981 2 28999999999854 5999999999999999
Q ss_pred eEEEeecCCC-----ceEEEEEEeCCCCC-CcceeEEEecccccccC---CceeeEEEccc
Q 003153 94 HFKIPLAHPV-----SQIEFYVKDNDVFG-ADLIGVATIPAARIKSG---ESISDWFPILG 145 (843)
Q Consensus 94 ~f~~~v~~~~-----~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g---~~~~~w~~L~~ 145 (843)
+|.|.+..+. ..|.|+|+|.+.++ +++||++.++++++..+ .....|++|.+
T Consensus 50 ~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 50 YFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999986533 46999999999887 79999999999999775 44678999964
No 86
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.49 E-value=1.1e-13 Score=133.02 Aligned_cols=101 Identities=23% Similarity=0.392 Sum_probs=87.4
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC---EEEEEeeeccCCCCCee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG---ATVARTRVISNCQNPIW 91 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~---~~~~rT~vi~~~~nP~W 91 (843)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+++|+++.++.||.|
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~W 49 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRF 49 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------CCcEEEEEEecCCcCCeeccceeeCCCCCCc
Confidence 67999999999877 4443 89999999984 46779999999999999
Q ss_pred eeeEEEeecCC----------------CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 92 NEHFKIPLAHP----------------VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 92 nE~f~~~v~~~----------------~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
||+|.|.+... ...|.|+|||.+..+ +++||++.+++.++........||+|...
T Consensus 50 ne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 50 DEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 99999998764 346999999999885 89999999999999877778999999655
No 87
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.49 E-value=7.9e-14 Score=137.68 Aligned_cols=104 Identities=27% Similarity=0.418 Sum_probs=86.8
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
..|.|.|+|++|++|+.++..+. +||||+|.+.. ..++||++++++
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------~DPYVkv~l~~~~~~~~~~kT~vi~~t 74 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------SDSFVKCYLLPDKSKKSKQKTPVVKKS 74 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------CCCEEEEEEEcCCCCCcceeCCccCCC
Confidence 45899999999999998876543 89999999842 356799999999
Q ss_pred CCCeeeeeEEEeecCC----CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 87 QNPIWNEHFKIPLAHP----VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
.||.|||.|.|.+... ...|.|+|||++.++ +++||++.+++.++..-...+.|+++.
T Consensus 75 ~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 75 VNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9999999999986432 246999999999987 899999999999987655567777764
No 88
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=1.6e-13 Score=129.64 Aligned_cols=102 Identities=22% Similarity=0.356 Sum_probs=87.3
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP 89 (843)
.+.|.|+|++|++|++++..+. +||||++.+.+ ....||+++++ .||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~------------------------------~d~yVk~~llp~~~~~~kTkv~~~-~nP 63 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGA------------------------------SSWQVHLVLLPSKKQRAKTKVQRG-PNP 63 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCC------------------------------CCcEEEEEEccCCcceeecccccC-CCC
Confidence 3789999999999998875443 89999988754 35669999888 999
Q ss_pred eeeeeEEEe-ecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 90 IWNEHFKIP-LAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~-v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
+|||+|.|+ +.. ....|.|+|+|++.++ +++||++.|+++.+..+.....|++|.
T Consensus 64 ~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 64 VFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999999998 554 3456999999999887 899999999999998888889999984
No 89
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=5.5e-14 Score=135.06 Aligned_cols=107 Identities=28% Similarity=0.432 Sum_probs=90.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--C--EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--G--ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~--~~~~rT~vi~~~~ 87 (843)
.|+|.|+|++|++|+.++..+. +||||+|.+. + ....||++++++.
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~------------------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~ 63 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT------------------------------SDPYVKVWLMYKDKRVEKKKTVIKKRTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------CCceEEEEEEeCCCccccccCcceeCCC
Confidence 3899999999999998776554 8999999984 2 2356999999999
Q ss_pred CCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+.. ....|.|+|||.+.++ +++||++.+++.+. |...++|++++...+++
T Consensus 64 ~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 64 NPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred CCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 99999999999753 2346999999999887 79999999999886 66778999998776665
No 90
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.49 E-value=4.9e-14 Score=133.07 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=87.3
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|+|+|++|+||++++... ++||||+|++.. ..+.||++++++.
T Consensus 13 ~~rLtV~VikarnL~~~~~~~------------------------------~~dpYVKV~L~~~~k~~~KkKT~v~k~t~ 62 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPL------------------------------TLSFFVKVGMFSTGGLLYKKKTRLVKSSN 62 (135)
T ss_pred CCeEEEEEEEccCCCcccCCC------------------------------CCCcEEEEEEEECCCcceeecCccEECCC
Confidence 589999999999999864322 279999999863 3466999999985
Q ss_pred -CCeeeeeEEEeecCCCc--eEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 -NPIWNEHFKIPLAHPVS--QIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 -nP~WnE~f~~~v~~~~~--~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.++.... .+.++|+|.+..+ +++||++.++.++. .+...++|.+++...+++
T Consensus 63 ~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 63 GQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred CCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 69999999999986443 4788899998876 89999999999874 345678999998776665
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=3.6e-13 Score=127.77 Aligned_cols=116 Identities=30% Similarity=0.589 Sum_probs=95.3
Q ss_pred EEEEEEEEeeCCCCCC--CchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-----EEEEEeeeccCC
Q 003153 14 DLDLKIVEARRLPNMD--LVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-----ATVARTRVISNC 86 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-----~~~~rT~vi~~~ 86 (843)
.|+|+|++|++|++++ ..+. +||||++++.+ ....||+++.++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~ 52 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------VDPYVEVEIHGLPADDSAKFKTKVVKNN 52 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------cCCEEEEEEEeCCCCCCCcEeeeeecCC
Confidence 5899999999999876 2332 89999999953 245799998876
Q ss_pred C-CCeeeeeEEEeecCCC-ceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 87 Q-NPIWNEHFKIPLAHPV-SQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 87 ~-nP~WnE~f~~~v~~~~-~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
. ||.|||+|.|.+..+. ..|.|+|+|.+..++++||.+.++++++..|. .|++|.+..|++ ...|.|.+++++
T Consensus 53 ~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 53 GFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 5 9999999999987654 45899999998778899999999999997664 589998887774 446888888875
No 92
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=3.4e-14 Score=136.51 Aligned_cols=107 Identities=29% Similarity=0.473 Sum_probs=90.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--E--EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--A--TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~--~~~rT~vi~~~~ 87 (843)
+|.|.|+|++|++|++++..+. +||||+|.+.+ . ...+|++++++.
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 63 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKRTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCC------------------------------CCCeEEEEEEECCcccceeeccceeCCC
Confidence 6999999999999998876553 89999999852 2 356899999999
Q ss_pred CCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|++.. .|...++|++++...+++
T Consensus 64 nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 64 NPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 9999999999986532 36899999999887 7999999999975 366778999998776655
No 93
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.48 E-value=6.4e-14 Score=134.25 Aligned_cols=107 Identities=34% Similarity=0.490 Sum_probs=89.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
+|.|+|+|++|++|++++..+. +||||+|.+.. ....+|++++++.
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~------------------------------~dpyvkv~l~~~~~~~~~~kT~v~~~t~ 62 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGF------------------------------SDPYVKVSLMCEGRRLKKKKTSVKKNTL 62 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCC------------------------------CCceEEEEEEeCCcccceecCCcccCCC
Confidence 6999999999999999887654 89999999842 2356999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+... ...|.|+|||++.++ +++||.+.|++. ..+...+.|++++...+++
T Consensus 63 nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 63 NPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 999999999998542 235899999999988 899999999987 3456677899998777765
No 94
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=2.1e-13 Score=131.82 Aligned_cols=92 Identities=34% Similarity=0.624 Sum_probs=82.5
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|+..+. +. +||||+|.+++ ..+||++++++.||+||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------sDPYV~v~~g~-~~~kT~vvk~t~nP~Wn 49 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------SDPYVVLTLGN-QKVKTRVIKKNLNPVWN 49 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------cCcEEEEEECC-EEEEeeeEcCCCCCeec
Confidence 899999999999997765 32 89999999987 46799999999999999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCc
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES 136 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~ 136 (843)
|.|.|.+.++...|.|+|||++.++ +++||.+.+++..+.....
T Consensus 50 E~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 50 EELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred ccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 9999999988778999999999887 7999999999999876544
No 95
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.47 E-value=6.7e-14 Score=133.88 Aligned_cols=107 Identities=30% Similarity=0.471 Sum_probs=91.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~~ 87 (843)
.+.|.|+|++|++|++++..+. +||||+|.+.+. ..++|+++.++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~ 62 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------SDPYVKVSLLQGGKKLKKKKTSVKKGTL 62 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCcEEEEEEEcCCeEeeeecCcceecCC
Confidence 3899999999999998775443 899999998652 366999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++++ .+...+.|++|++..+++
T Consensus 63 ~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 63 NPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred CCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 999999999998764 357999999999866 8999999999999 677889999998876665
No 96
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.47 E-value=2.2e-13 Score=128.48 Aligned_cols=89 Identities=33% Similarity=0.468 Sum_probs=76.5
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|+. +..+. +||||+|.+++. ++||++++++.||+||
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~------------------------------~DPYVkV~~~~~-~~kT~vi~~t~nPvWN 75 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTS------------------------------TDGYVKVFFGGQ-EKRTEVIWNNNNPRWN 75 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCC------------------------------CCeEEEEEECCc-cccCceecCCCCCcCC
Confidence 899999999999973 44332 899999999875 7799999999999999
Q ss_pred eeEEEeecC--CCceEEEEEEeCCCCC-CcceeEEEeccccccc
Q 003153 93 EHFKIPLAH--PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKS 133 (843)
Q Consensus 93 E~f~~~v~~--~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~ 133 (843)
|+|.|.... ....|.|+|||++.++ +++||++.+++.....
T Consensus 76 E~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 76 ATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 999997533 3567999999999986 8999999999986653
No 97
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.46 E-value=2.6e-13 Score=129.43 Aligned_cols=106 Identities=27% Similarity=0.440 Sum_probs=90.5
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccC
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISN 85 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~ 85 (843)
+-.|.|.|+|++|++|+..+..+. +||||+|.+.+ ..++||+++++
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~------------------------------~dpyv~v~~~~~~~~~~~~rT~v~~~ 59 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNETKQKTKTIKK 59 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCC------------------------------CCCcEEEEEEcCCCCCceecceeecC
Confidence 346999999999999998765443 89999999963 35789999999
Q ss_pred CCCCeeeeeEEEeecCC--CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 86 CQNPIWNEHFKIPLAHP--VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 86 ~~nP~WnE~f~~~v~~~--~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
+.||.|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++... ..+.||+|.+.
T Consensus 60 ~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 60 TLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99999999999998753 346999999998876 79999999999999855 67899999765
No 98
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.46 E-value=7.6e-13 Score=125.16 Aligned_cols=117 Identities=23% Similarity=0.370 Sum_probs=91.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
-.|.|+|.+|+ |...+..+. +||||+|.+++..+++|+++.++.||.||
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~------------------------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wn 50 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFK------------------------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWN 50 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCC------------------------------CCeEEEEEECCcccEEeeeeCCCCCCccc
Confidence 36899999998 544443333 89999999988657899999999999999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCc-----eeeEEEcccCCCCCCCCcceEEEEE
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES-----ISDWFPILGLYGKPPKSETAVFMEM 161 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~-----~~~w~~L~~~~~~~~~~~g~l~l~l 161 (843)
|+|.|.+. ....|.|+|||++..+ +++||++.+++.++..+.. ...|+++...+....+..|+|.+.+
T Consensus 51 e~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 51 EHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999986 3568999999999886 8999999999999876322 3458999644311224478887764
No 99
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.44 E-value=1.4e-13 Score=132.36 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=90.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~~~ 87 (843)
.+.|.|+|++|++|+.++ .+. +||||+|.+.+. ...||++++++.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~ 62 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------TSVYVKVSLMIHNKVVKTKKTEVVDGAA 62 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------CCeEEEEEEEECCEEeeeeecccEeCCC
Confidence 488999999999999877 443 899999998642 355999999999
Q ss_pred CCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||+|||+|.|.+.. ....|.|+|+|.+..+ +++||++.|+......|...++|..++...+++
T Consensus 63 nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 63 SPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred CCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 99999999999964 2246999999999776 899999999987777788889999998665554
No 100
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.43 E-value=2e-12 Score=123.64 Aligned_cols=115 Identities=21% Similarity=0.327 Sum_probs=91.1
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE------------EEEEee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA------------TVARTR 81 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~------------~~~rT~ 81 (843)
...|++++|++|+ ++.++. +||||++++.+. ...||+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~ 50 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------PDPYVKISIQPGKRHIFPALPHHGQECRTS 50 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------CCceEEEEEECCCcccccccccccceeeee
Confidence 3679999999998 666654 999999999541 267999
Q ss_pred eccCCCCCee-eeeEEEeecCCCceEEEEEEeCCCCC----CcceeEEEecccccccCC---ceeeEEEcccCCCCCCCC
Q 003153 82 VISNCQNPIW-NEHFKIPLAHPVSQIEFYVKDNDVFG----ADLIGVATIPAARIKSGE---SISDWFPILGLYGKPPKS 153 (843)
Q Consensus 82 vi~~~~nP~W-nE~f~~~v~~~~~~l~~~V~d~d~~~----~~~IG~~~ipl~~l~~g~---~~~~w~~L~~~~~~~~~~ 153 (843)
+++++.||+| ||+|.|.+.. ...|.|+|||++..+ +++||++.+|+.++..+. ....|++|...... ...
T Consensus 51 v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~-s~v 128 (137)
T cd08691 51 IVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPT-DHV 128 (137)
T ss_pred eEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCC-CcE
Confidence 9999999999 9999999863 457999999976532 689999999999998653 35679999755433 245
Q ss_pred cceEEEEE
Q 003153 154 ETAVFMEM 161 (843)
Q Consensus 154 ~g~l~l~l 161 (843)
.|+|.+++
T Consensus 129 ~G~~~l~~ 136 (137)
T cd08691 129 SGQLTFRF 136 (137)
T ss_pred EEEEEEEe
Confidence 68887764
No 101
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.42 E-value=6.3e-13 Score=127.20 Aligned_cols=91 Identities=31% Similarity=0.461 Sum_probs=79.7
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC------EEEEEeeeccCC
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG------ATVARTRVISNC 86 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~------~~~~rT~vi~~~ 86 (843)
+.|.|+|++|++|+.++..+. +||||+|.+.+ ....||++++++
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t 65 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------SDPFVKVELLPRHLFPDVPTPKTQVKKKT 65 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------CCCEEEEEEECCCcCccccccccccCcCC
Confidence 789999999999998876553 89999999863 346799999999
Q ss_pred CCCeeeeeEEEeecCC-----CceEEEEEEeCCCCC-CcceeEEEeccccccc
Q 003153 87 QNPIWNEHFKIPLAHP-----VSQIEFYVKDNDVFG-ADLIGVATIPAARIKS 133 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~-----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~ 133 (843)
.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++++++..
T Consensus 66 ~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 66 LFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999999998652 346999999999988 8999999999999974
No 102
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.42 E-value=4.2e-13 Score=128.74 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=86.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+.++..+. +||||+|.+.. ....+|++++++.
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~ 62 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG------------------------------SDPFVKIQLVHGLKLIKTKKTSCMRGTI 62 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------CCeEEEEEEEcCCcccceEcCccccCCC
Confidence 4899999999999998886654 89999999842 2346999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+... ...|.|+|||++..+ +++||++.|...... +...++|+.|+...+++
T Consensus 63 nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 63 DPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred CCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 999999999998542 235899999999876 899999987653332 22468899998877765
No 103
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.41 E-value=2.9e-12 Score=145.08 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=103.0
Q ss_pred CCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCC
Q 003153 496 QNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGA 575 (843)
Q Consensus 496 ~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~ 575 (843)
.+|.++++.|++.+- .|+. .-.|.+++|+++|.+||++|+|+++||+.+.. .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~-----~---- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDE-----V---- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCcc-----c----
Confidence 457889999997664 2322 02688999999999999999999999984210 0
Q ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEe
Q 003153 576 DNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFY 655 (843)
Q Consensus 576 ~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~ 655 (843)
....+..+..+|.+|.+ +||+|+|+++.. +.+. ...+.|.++|+++ ..|
T Consensus 56 ~~~~G~~i~~aL~~aA~--rGV~VRIL~d~~--~~~~--------------------~~~~~L~~aGv~v-------~~~ 104 (424)
T PHA02820 56 GTNFGTMILNEIIQLPK--RGVRVRIAVNKS--NKPL--------------------KDVELLQMAGVEV-------RYI 104 (424)
T ss_pred cchhHHHHHHHHHHHHH--CCCEEEEEECCC--CCch--------------------hhHHHHHhCCCEE-------EEE
Confidence 01124567777777755 559999999842 1111 0135688889864 233
Q ss_pred ecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeec
Q 003153 656 CLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQ 731 (843)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d 731 (843)
.... +. ....|+|+||||+++++|||+||+.||+..+ .|+++.+.+
T Consensus 105 ~~~~--------~~--------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~ 150 (424)
T PHA02820 105 DITN--------IL--------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFN 150 (424)
T ss_pred ecCC--------CC--------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEec
Confidence 2110 00 1259999999999999999999999999754 899888754
No 104
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.6e-12 Score=146.85 Aligned_cols=127 Identities=25% Similarity=0.379 Sum_probs=107.4
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE--EEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA--TVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~--~~~rT~vi~~~~nP 89 (843)
+..|.|+|++|++|+.+|..+ ++||||++++... ...+|++.+++.||
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g------------------------------~sdpyVK~~llPdk~~k~kT~v~r~tlnP 215 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGG------------------------------TSDPYVKVYLLPDKKGKFKTRVHRKTLNP 215 (421)
T ss_pred CCEEEEEEEEecCCCcccCCC------------------------------CCCCeeEEEEcCCCCCcceeeeeecCcCC
Confidence 688999999999999988322 3899999999863 46699999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
.|||+|.|.+++. ...|.|+|||.|.|+ +++||.+.+++..+........|.+|...........|+|.++++|.|
T Consensus 216 ~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 216 VFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred ccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeec
Confidence 9999999998763 456999999999998 899999999999988777788899997654333344489999999999
Q ss_pred ccC
Q 003153 166 CEE 168 (843)
Q Consensus 166 ~~~ 168 (843)
...
T Consensus 296 ~~g 298 (421)
T KOG1028|consen 296 TAG 298 (421)
T ss_pred CCC
Confidence 843
No 105
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.40 E-value=3.8e-13 Score=129.28 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=87.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC---E--EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG---A--TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~---~--~~~rT~vi~~~ 86 (843)
.++|.|+|++|+||+.++..+. +||||++.+.+ . ...||++++++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------~dpyVkv~llp~~~~~~~~~kT~v~~~t 63 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------PDTYVKLTLLNSDGQEISKSKTSIRRGQ 63 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------CCeeEEEEEEeCCCcceeeccceeecCC
Confidence 4899999999999998876553 89999999853 1 24599999999
Q ss_pred CCCeeeeeEEEeecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 87 QNPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
.||+|||+|.|.+.. ....|.|+|||.+.++ +++||++.+++.... ....++|..++...+++
T Consensus 64 ~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 64 PDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred CCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence 999999999999975 2346999999998876 899999999987443 23457898887665554
No 106
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.39 E-value=1.7e-12 Score=121.92 Aligned_cols=97 Identities=28% Similarity=0.409 Sum_probs=82.9
Q ss_pred EEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEE------EEEeeeccCCCCCee
Q 003153 18 KIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGAT------VARTRVISNCQNPIW 91 (843)
Q Consensus 18 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~------~~rT~vi~~~~nP~W 91 (843)
-.++|++|++++..+. +||||+|.+.+.. ++||++++++.||+|
T Consensus 5 ~~i~a~~L~~~d~~g~------------------------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~w 54 (120)
T cd04048 5 LSISCRNLLDKDVLSK------------------------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDF 54 (120)
T ss_pred EEEEccCCCCCCCCCC------------------------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCc
Confidence 4588999998887664 8999999997643 689999999999999
Q ss_pred eeeEEEeecC-CCceEEEEEEeCCC----CC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 92 NEHFKIPLAH-PVSQIEFYVKDNDV----FG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 92 nE~f~~~v~~-~~~~l~~~V~d~d~----~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
||+|.|.+.. ....|.|+|||++. .+ +++||++.+++.++..+.....|++|.
T Consensus 55 ne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 55 VTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred eEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999998643 44569999999986 55 899999999999999887788899993
No 107
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.38 E-value=5.1e-12 Score=116.19 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=67.5
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCCCCe
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQNPI 90 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~nP~ 90 (843)
|.|+|.+|++|+. . +||||++.+.+ ..++||++++++.||+
T Consensus 1 L~V~V~~A~~L~~-----~------------------------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPv 45 (118)
T cd08686 1 LNVIVHSAQGFKQ-----S------------------------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPN 45 (118)
T ss_pred CEEEEEeCCCCCC-----C------------------------------CCCEEEEEEcCccccceeeeeeeecCCCCCc
Confidence 6899999999962 1 79999999864 3578999999999999
Q ss_pred eeeeEEEeecCCCceEEEEEEeC-------CCCC-CcceeEEEecccc
Q 003153 91 WNEHFKIPLAHPVSQIEFYVKDN-------DVFG-ADLIGVATIPAAR 130 (843)
Q Consensus 91 WnE~f~~~v~~~~~~l~~~V~d~-------d~~~-~~~IG~~~ipl~~ 130 (843)
|||+|.|++.. ...|.|.|||+ |..+ +++||++.+.++.
T Consensus 46 WnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 46 WNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 99999999974 66899999997 4455 8999888887743
No 108
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.38 E-value=2.8e-12 Score=120.91 Aligned_cols=101 Identities=30% Similarity=0.417 Sum_probs=83.3
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.+.|.|+|++|++|++.+..+. +||||++.+.+ ..+.||++++++.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~ 63 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------SDPYVKLNLLPGASKATKLRTKTVHKTR 63 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCceEEEEEecCCCCCCceeeeeecCCC
Confidence 3789999999999998776543 89999999843 3467999999999
Q ss_pred CCeeeeeEEEeecC----CCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEE
Q 003153 88 NPIWNEHFKIPLAH----PVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFP 142 (843)
Q Consensus 88 nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~ 142 (843)
||.|||+|.|.... ....+.|+|||.+.+++++||.+.+++.++..+...+.|+.
T Consensus 64 ~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 64 NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999999996322 23579999999987788999999999999987766655543
No 109
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.38 E-value=1.2e-12 Score=166.66 Aligned_cols=119 Identities=21% Similarity=0.409 Sum_probs=101.6
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCe
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPI 90 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~ 90 (843)
+-|.|.|+|++|++|. +.++ ++||||++.+++....||++++++.||+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~------------------------------~sdPyv~l~~g~~~~~kTkvvk~~~nP~ 2025 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMG------------------------------NTNAFCKLTLGNGPPRQTKVVSHSSSPE 2025 (2102)
T ss_pred CCcceEEEEeeccccc--cccC------------------------------CCCCeEEEEECCCCcccccccCCCCCCC
Confidence 3599999999999997 2233 2899999999976555999999999999
Q ss_pred eeeeEEEeecCCC--ceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcce---EEEEEEEEe
Q 003153 91 WNEHFKIPLAHPV--SQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETA---VFMEMRFLP 165 (843)
Q Consensus 91 WnE~f~~~v~~~~--~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~---l~l~l~~~~ 165 (843)
|||.|+|.+..+. ..|.|+|||+|.++++.+|.+.|++.++..++.+.+||+|.+++.| .|+ |.+.++|.+
T Consensus 2026 Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k----~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2026 WKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNK----DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCccccc----CCCcceEEEEEEecC
Confidence 9999998887655 5699999999999988999999999999999999999999754333 466 999998865
No 110
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.37 E-value=2.1e-13 Score=145.33 Aligned_cols=104 Identities=28% Similarity=0.466 Sum_probs=92.3
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
...|+|+|.+|+||-+||.++. |||||++.+.+ ..+++|++|+.++
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGl------------------------------SDPYvk~kliPD~~~~sKqKTkTik~~L 228 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNESKQKTKTIKATL 228 (683)
T ss_pred CceEEEEehhhccccccCCCCC------------------------------CCcceeEEeccCCcchhhhhhhhhhhhc
Confidence 4679999999999999999886 99999999864 4677999999999
Q ss_pred CCeeeeeEEEeecCCC--ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 88 NPIWNEHFKIPLAHPV--SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~--~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
||+|||+|.|.+.... ..|.++|||+|.-+ ++|+|..++.+++|.. .++++||.|++.
T Consensus 229 NP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 229 NPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred CccccceeEEecccccccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 9999999999996543 46999999999887 8999999999999984 578999999876
No 111
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=4.1e-12 Score=119.96 Aligned_cols=89 Identities=31% Similarity=0.463 Sum_probs=77.3
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEE-EEEeeeccCCCCCeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGAT-VARTRVISNCQNPIWNE 93 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~-~~rT~vi~~~~nP~WnE 93 (843)
|+|+|++|++|++++..+. +||||+|.+++.. ..||++++++.||+|||
T Consensus 2 lrV~Vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne 51 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK------------------------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGK 51 (124)
T ss_pred EEEEEEECcCCCCCCCCCC------------------------------CCcEEEEEECCeeccceeeEEECCCCCccce
Confidence 7899999999999887654 8999999998854 35899999999999999
Q ss_pred eEEEeecCC-CceEEEEEEeCCCCC-CcceeEEEeccccccc
Q 003153 94 HFKIPLAHP-VSQIEFYVKDNDVFG-ADLIGVATIPAARIKS 133 (843)
Q Consensus 94 ~f~~~v~~~-~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~ 133 (843)
+|.|.+..+ ...|.|+|||.+.++ +++||++.+++++...
T Consensus 52 ~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 52 MFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 999998654 456999999999986 8999999999987753
No 112
>PRK13912 nuclease NucT; Provisional
Probab=99.31 E-value=4.5e-11 Score=119.97 Aligned_cols=141 Identities=15% Similarity=0.248 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
.++++.+.++|++|+++|+|+.|.+.. ..+.++|.+|++|||+|+|++ |...+...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999876632 479999999999999999997 76533210
Q ss_pred cccCCChHHHHhhhc-CCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccC
Q 003153 305 GVMQTHDEETRKFFK-HSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYD 383 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~D 383 (843)
......++. ..++++.......... ......+|.|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 111222222 3456654321111000 01123589999999998 999999999984432
Q ss_pred CCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChH-HHHHHHHHHHHHhhh
Q 003153 384 TPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPA-AYDVLTNFEQRWRKA 443 (843)
Q Consensus 384 t~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~~rW~~~ 443 (843)
--+++.+.++.|. +.++.+.|.+.|..+
T Consensus 146 --------------------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 --------------------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred --------------------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1235778888884 689999999999864
No 113
>PRK13912 nuclease NucT; Provisional
Probab=99.29 E-value=2.7e-11 Score=121.54 Aligned_cols=141 Identities=17% Similarity=0.214 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSAS 615 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~ 615 (843)
..+...++++|++|++.|+|+. |++. ...+..+|.+|.+ +|++|+|+++........ .
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~-----------------~~~i~~aL~~Aa~--RGV~VrIlld~~~~~~~~-~- 89 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFT-----------------HKDIAKALKSAAK--RGVKISIIYDYESNHNND-Q- 89 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEc-----------------hHHHHHHHHHHHH--CCCEEEEEEeCccccCcc-h-
Confidence 4567889999999999999996 5442 2367777777765 559999999964321100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEe
Q 003153 616 VQEILYWQGQTRQMMYEIIAQELNS-MQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVH 694 (843)
Q Consensus 616 ~~~~~~~~~~t~~~~~~~i~~~L~~-~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 694 (843)
.++ ..|.+ .+++ ++.... .. ... + ...-++|
T Consensus 90 ---------~~~--------~~l~~~~~~~---------~~~~~~--~~----~~~------~----------~~~~~~H 121 (177)
T PRK13912 90 ---------STI--------GYLDKYPNIK---------VCLLKG--LK----AKN------G----------KYYGIMH 121 (177)
T ss_pred ---------hHH--------HHHHhCCCce---------EEEecC--cc----ccC------c----------ccccccc
Confidence 000 11111 1221 111000 00 000 0 0012689
Q ss_pred eeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHH
Q 003153 695 AKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAE 757 (843)
Q Consensus 695 sKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~e 757 (843)
+|+||||++++++||+||+.+|+. ++.|+.+++.||..+ .+..+.-.++|+.
T Consensus 122 ~K~~viD~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~---------~~~~~~F~~~~~~ 173 (177)
T PRK13912 122 QKVAIIDDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI---------LKAKEYFQKMLGS 173 (177)
T ss_pred eeEEEEcCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH---------HHHHHHHHHHHHh
Confidence 999999999999999999999998 459999999887543 1334455566654
No 114
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.29 E-value=1.9e-11 Score=136.69 Aligned_cols=142 Identities=19% Similarity=0.203 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhh-hcCCeEEEEEeCCccccccccccccc
Q 003153 227 CWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKS-QEGVRVLLLVWDDKTSHSKFFINTAG 305 (843)
Q Consensus 227 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka-~~GV~VriLvwd~~~s~~~~~~~~~~ 305 (843)
..+.++++|.+||++|+|+.+.|.|.. +++.. ...+..|.++|.++| +|||+||||+ +..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~---~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDDK---TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC---CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------
Confidence 468899999999999999998776531 11110 002358999998885 8999999998 65422110
Q ss_pred ccCCChHHHHhhhcCCCcE----EEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcc
Q 003153 306 VMQTHDEETRKFFKHSSVH----CVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGR 381 (843)
Q Consensus 306 ~~~~~~~~~~~~l~~~~v~----v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 381 (843)
. .....+.|...|++ +..+ .+.+|+|++|||++ +||+||.|+....
T Consensus 283 ~----~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s 332 (369)
T PHA03003 283 Y----SMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTH 332 (369)
T ss_pred h----hhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchh
Confidence 0 12344556666743 2211 01279999999998 9999999998844
Q ss_pred cCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhh
Q 003153 382 YDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKA 443 (843)
Q Consensus 382 ~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~ 443 (843)
+.. ..|.++ ..++|++|.++...|.++|+..
T Consensus 333 ~~~------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 333 YLH------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred hcc------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 421 122232 2468999999999999999854
No 115
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.29 E-value=2.8e-11 Score=121.40 Aligned_cols=131 Identities=22% Similarity=0.341 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCh
Q 003153 535 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSA 614 (843)
Q Consensus 535 e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~ 614 (843)
..++.+.++++|++|++.|+|+++||.+.. .....++...|.++.++ |++|+|++...+.... .
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~r--Gv~V~il~~~~~~~~~--~ 82 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAARR--GVKVRILVDEWSNTDL--K 82 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHHC--CCEEEEEEcccccCCc--h
Confidence 367889999999999999999999998421 00134677888888765 5999999997553221 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeE
Q 003153 615 SVQEILYWQGQTRQMMYEIIAQELNSM---QMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMI 691 (843)
Q Consensus 615 ~~~~~~~~~~~t~~~~~~~i~~~L~~~---g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 691 (843)
. .. .....|.+. |+ .++.+..... ...
T Consensus 83 ~--------~~-------~~~~~l~~~~~~~i---------~~~~~~~~~~--------------------------~~~ 112 (176)
T cd00138 83 I--------SS-------AYLDSLRALLDIGV---------RVFLIRTDKT--------------------------YGG 112 (176)
T ss_pred H--------HH-------HHHHHHHHhhcCce---------EEEEEcCCcc--------------------------ccc
Confidence 0 00 112334333 33 2332211100 023
Q ss_pred EEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCC
Q 003153 692 YVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPH 733 (843)
Q Consensus 692 yvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~ 733 (843)
..|+|+||||++.+++||+|++.+|+. .+.|+++.+.+++
T Consensus 113 ~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 113 VLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred ceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 799999999999999999999999997 5599999998874
No 116
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.26 E-value=2.5e-11 Score=140.97 Aligned_cols=139 Identities=16% Similarity=0.146 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
+.+++.+.++|.+||++|+|+...|.| +..+.++|+.||+|||+|+||+ +..+.+...
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~p----------------d~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~----- 400 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIP----------------DQETLTLLRLSAISGIDVRILY-PGKSDSIIS----- 400 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCC----------------CHHHHHHHHHHHHcCCEEEEEc-CCCCChHHH-----
Confidence 578999999999999999999744433 1578999999999999999998 654211100
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
........+.|...||++..+.. ...|.|++|||++ +|+|||.|+.. |.-.
T Consensus 401 ---~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~--------~a~vGS~Nld~-RS~~ 451 (509)
T PRK12452 401 ---DQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK--------IATIGTANMDV-RSFE 451 (509)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC--------EEEEeCcccCH-hHhh
Confidence 00012334566778999875432 1389999999998 99999999988 4311
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhc
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKAT 444 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~ 444 (843)
..|.+..+...++.|.++...|.++|..+.
T Consensus 452 ------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 452 ------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred ------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 235577888888899999999999998754
No 117
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.23 E-value=5.6e-11 Score=109.71 Aligned_cols=89 Identities=30% Similarity=0.454 Sum_probs=73.9
Q ss_pred EEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE-----EEEEeeeccCCCCCee
Q 003153 17 LKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA-----TVARTRVISNCQNPIW 91 (843)
Q Consensus 17 V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~-----~~~rT~vi~~~~nP~W 91 (843)
+-+++|++|+.++..+. +||||+|++.+. .+++|++++++.||.|
T Consensus 4 ~~~i~a~~L~~~d~~~~------------------------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~W 53 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK------------------------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVW 53 (110)
T ss_pred EEEEEeCCCCCCCCCCC------------------------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCce
Confidence 44579999999887664 899999998653 4689999999999999
Q ss_pred eeeEEEeecC-----CCceEEEEEEeCCCCC-CcceeEEEecccccccCCc
Q 003153 92 NEHFKIPLAH-----PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES 136 (843)
Q Consensus 92 nE~f~~~v~~-----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~ 136 (843)
| .|.|++.. ....|.|+|||++..+ +++||++.++++++..+..
T Consensus 54 n-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 54 K-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSP 103 (110)
T ss_pred E-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCCC
Confidence 9 78888643 2457999999999987 8999999999999985433
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.2e-11 Score=137.30 Aligned_cols=125 Identities=25% Similarity=0.412 Sum_probs=110.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
-.|.|+|.||+|||..+..+. +||||+|.++.+.+.||.++..++.|-|.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~------------------------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~g 54 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGM------------------------------RDCYCTVNLDQEEVCRTATVEKSLCPFFG 54 (800)
T ss_pred cceeEEEeecccCCCCCCCCC------------------------------cCcceEEeecchhhhhhhhhhhhcCCccc
Confidence 468999999999998876553 89999999999999999999999999999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEeccCC
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPCEEN 169 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~~~ 169 (843)
|.|.|.++.....|.|.|||.| ++ |+.||.+.|.-++|..-...+.||.|..-.-.. +..|+|++++++.+....
T Consensus 55 Ee~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 55 EEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQS 130 (800)
T ss_pred cceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCCh-hhceeEEEEEEeccccCC
Confidence 9999999998899999999999 55 999999999999998877788999996443332 568999999999887653
No 119
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.18 E-value=4.8e-11 Score=112.72 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=71.9
Q ss_pred HHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHH
Q 003153 542 YIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILY 621 (843)
Q Consensus 542 yl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~ 621 (843)
.+++|.+|++.|+|..+||... .+...+..+.+ ++++|+|++...... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~--~gv~v~ii~~~~~~~-~~~~~------ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAK--RGVKVRIIVDSNQDD-SEAIN------ 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHH--TT-EEEEEEECGGGH-HCCCS------
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHH--CCCeEEEEECCCccc-cchhh------
Confidence 3679999999999999999521 34555555544 559999999853210 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEe
Q 003153 622 WQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVD 701 (843)
Q Consensus 622 ~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVD 701 (843)
. .....+.+.+...|+++ + -++|+|++|+|
T Consensus 54 --~----~~~~~~~~~~~~~~i~v---------~-----------------------------------~~~H~K~~i~d 83 (126)
T PF13091_consen 54 --L----ASLKELRELLKNAGIEV---------R-----------------------------------NRLHAKFYIID 83 (126)
T ss_dssp --H----HHHHHHHHHHHHTTHCE---------E-----------------------------------S-B--EEEEET
T ss_pred --h----HHHHHHHhhhccceEEE---------e-----------------------------------cCCCcceEEec
Confidence 0 01112344456777654 1 05999999999
Q ss_pred eeEEEEcccCccCCCcCCCCCcceEEeeecCC
Q 003153 702 DEYVILGSANINQRSLAGGRDTEIAMGAYQPH 733 (843)
Q Consensus 702 D~~~iiGSANin~RSm~~~rDsEi~v~i~d~~ 733 (843)
|+++++||+|++.+|+. ++.|+++.+.++.
T Consensus 84 ~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 84 DKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp TTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred CccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 99999999999999996 5599999998873
No 120
>PLN02223 phosphoinositide phospholipase C
Probab=99.14 E-value=3.9e-10 Score=127.71 Aligned_cols=123 Identities=24% Similarity=0.419 Sum_probs=96.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
..+|.|+|+.|.+++. +. .+ + . ......||||+|.+.| ....+|.+..|+.
T Consensus 408 ~~~L~V~Visgq~~~~-~~-~k-------------------~--~--~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~ 462 (537)
T PLN02223 408 VKILKVKIYMGDGWIV-DF-KK-------------------R--I--GRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEW 462 (537)
T ss_pred ceEEEEEEEEcccccC-Cc-cc-------------------c--c--CCCCCCCeEEEEEEeeccCCcceeEEEeCCCCc
Confidence 4679999999998862 11 00 0 0 0011279999999987 2345888888899
Q ss_pred CCeeeeeEEEeecCCCce-EEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 88 NPIWNEHFKIPLAHPVSQ-IEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~-l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
||+|||+|.|.+..+... |.|+|+|+|..+ +++||+..+|+..+..|.. +++|.+..|++.. ..+|.++++|
T Consensus 463 nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 463 KPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGIR---AVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred CceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCC-CceEEEEEEe
Confidence 999999999999776654 799999999876 8999999999999999986 8999999998864 3577777665
No 121
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.12 E-value=1.3e-10 Score=101.13 Aligned_cols=81 Identities=42% Similarity=0.735 Sum_probs=69.3
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE--EEEEeeeccCCCCCeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA--TVARTRVISNCQNPIWN 92 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~--~~~rT~vi~~~~nP~Wn 92 (843)
|+|+|++|++|+..+..+. +||||++.+.+. ...+|+++.++.+|.||
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 50 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWN 50 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------ccccceeecceeeeeeeeeeeeeccccceee
Confidence 7899999999998664433 899999999874 34799999999999999
Q ss_pred eeEEEeecC-CCceEEEEEEeCCCCC-CcceeEEE
Q 003153 93 EHFKIPLAH-PVSQIEFYVKDNDVFG-ADLIGVAT 125 (843)
Q Consensus 93 E~f~~~v~~-~~~~l~~~V~d~d~~~-~~~IG~~~ 125 (843)
|+|.|.+.. ....|.|+|||.+..+ +++||++.
T Consensus 51 e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 51 EEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 999999644 4446999999999998 89999874
No 122
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.2e-10 Score=129.00 Aligned_cols=118 Identities=27% Similarity=0.436 Sum_probs=97.0
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCe
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPI 90 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~ 90 (843)
|...+++++++|.+|...|..++ +||||++.++. .+.||++|....||+
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------sdpyvt~qv~k-tkrrtrti~~~lnpv 341 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------SDPYVTAQVGK-TKRRTRTIHQELNPV 341 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------CCCcEEEeecc-cchhhHhhhhccchh
Confidence 56788999999999988776554 99999999988 455999999999999
Q ss_pred eeeeEEEeecCCCceEEEEEEeCCCC------------CCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEE
Q 003153 91 WNEHFKIPLAHPVSQIEFYVKDNDVF------------GADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVF 158 (843)
Q Consensus 91 WnE~f~~~v~~~~~~l~~~V~d~d~~------------~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~ 158 (843)
|||.|+|.|.+....|.+.|||.|.- +|+|+|+..|.+..+. .+.+.||.|.....+. ...|.|+
T Consensus 342 w~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdks-avsgair 418 (1283)
T KOG1011|consen 342 WNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKS-AVSGAIR 418 (1283)
T ss_pred hhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchh-hccceEE
Confidence 99999999999888999999998632 4799999999988774 3567899997665554 3466666
Q ss_pred EEEE
Q 003153 159 MEMR 162 (843)
Q Consensus 159 l~l~ 162 (843)
+.+.
T Consensus 419 lhis 422 (1283)
T KOG1011|consen 419 LHIS 422 (1283)
T ss_pred EEEE
Confidence 5544
No 123
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.08 E-value=8.7e-10 Score=104.06 Aligned_cols=125 Identities=21% Similarity=0.364 Sum_probs=84.6
Q ss_pred HHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCC
Q 003153 231 ICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTH 310 (843)
Q Consensus 231 l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~ 310 (843)
|.++|.+|+++|+|+.+.+. ...+.++|..++++||+|+|++.+........ . ...
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-----------------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~--~-----~~~ 56 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-----------------DPDIIKALLDAAKRGVKVRIIVDSNQDDSEAI--N-----LAS 56 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS------------------SCHHHHHHHHHHHTT-EEEEEEECGGGHHCCC--S-----HHH
T ss_pred CHHHHhccCCEEEEEEEecC-----------------cHHHHHHHHHHHHCCCeEEEEECCCccccchh--h-----hHH
Confidence 57899999999999988662 14788899889999999999983322100000 0 000
Q ss_pred hHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCcc
Q 003153 311 DEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLF 390 (843)
Q Consensus 311 ~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~ 390 (843)
.....+.+...|+++. ...|.|++|||++ ++++|+.|++...|
T Consensus 57 ~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~-------- 99 (126)
T PF13091_consen 57 LKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSF-------- 99 (126)
T ss_dssp HHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCS--------
T ss_pred HHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchh--------
Confidence 1223444567777765 1389999999988 99999999999554
Q ss_pred CCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChH-HHHHHHHHHHHH
Q 003153 391 RDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPA-AYDVLTNFEQRW 440 (843)
Q Consensus 391 ~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~~rW 440 (843)
.-.++..+.+++|. +..+.+.|.+.|
T Consensus 100 ------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 ------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 13458999999996 899999999888
No 124
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=7.3e-10 Score=98.51 Aligned_cols=99 Identities=39% Similarity=0.740 Sum_probs=84.0
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|.|.|++|++|+...... .++|||.+.+.+...++|+++.++.||.|||.
T Consensus 1 l~v~i~~~~~l~~~~~~~------------------------------~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~ 50 (102)
T cd00030 1 LRVTVIEARNLPAKDLNG------------------------------KSDPYVKVSLGGKQKFKTKVVKNTLNPVWNET 50 (102)
T ss_pred CEEEEEeeeCCCCcCCCC------------------------------CCCcEEEEEeccCceEecceeCCCCCCcccce
Confidence 578999999998653322 28999999999866779999999999999999
Q ss_pred EEEeecC-CCceEEEEEEeCCCCC-CcceeEEEecccccc-cCCceeeEEEc
Q 003153 95 FKIPLAH-PVSQIEFYVKDNDVFG-ADLIGVATIPAARIK-SGESISDWFPI 143 (843)
Q Consensus 95 f~~~v~~-~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~-~g~~~~~w~~L 143 (843)
|.|.+.. ....|.|+|++.+..+ ..+||.+.+++..+. .......|++|
T Consensus 51 ~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 51 FEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 9999987 5667999999998876 799999999999998 66666778875
No 125
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.07 E-value=7.3e-10 Score=98.99 Aligned_cols=93 Identities=42% Similarity=0.743 Sum_probs=79.8
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE--EEEEeeeccCCCCCee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA--TVARTRVISNCQNPIW 91 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~--~~~rT~vi~~~~nP~W 91 (843)
+|.|.|++|++|....... ..+|||++.+.+. ..++|+++.++.||.|
T Consensus 1 ~l~i~i~~~~~l~~~~~~~------------------------------~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w 50 (101)
T smart00239 1 TLTVKIISARNLPKKDKKG------------------------------KSDPYVKVSLDGDPKEKKKTKVVKNTLNPVW 50 (101)
T ss_pred CeEEEEEEeeCCCCCCCCC------------------------------CCCceEEEEEeCCccceEeeeEecCCCCCcc
Confidence 3789999999998654322 2799999999875 5789999999999999
Q ss_pred eeeEEEeecCC-CceEEEEEEeCCCCC-CcceeEEEecccccccCCc
Q 003153 92 NEHFKIPLAHP-VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES 136 (843)
Q Consensus 92 nE~f~~~v~~~-~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~ 136 (843)
||.|.|++... ...|.|+|||.+..+ +.+||.+.+++.++..+..
T Consensus 51 ~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 51 NETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred cceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 99999999887 778999999998776 8999999999999877654
No 126
>PLN02952 phosphoinositide phospholipase C
Probab=99.02 E-value=2e-09 Score=124.64 Aligned_cols=124 Identities=22% Similarity=0.390 Sum_probs=94.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
..+|.|+|+.|.+|+.. .... .++ .....||||+|.+.| ....+|+++.++.
T Consensus 469 ~~~L~V~VisGq~l~lp-~~~~----~~~-------------------~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~ 524 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLD-FSHT----HFD-------------------SYSPPDFYTKMYIVGVPADNAKKKTKIIEDNW 524 (599)
T ss_pred cceEEEEEEECcccCCC-Cccc----cCC-------------------ccCCCCceEEEEEeccCCCCcceeeeeccCCC
Confidence 46899999999988631 1110 000 011269999999986 3455999999999
Q ss_pred CCeeeeeEEEeecCCCc-eEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 88 NPIWNEHFKIPLAHPVS-QIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~-~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
||+|||+|.|.+..+.. -|.|.|+|+|..+ ++++|++.+|+..|..|.. |++|.+..|++.. ...|.+++.|
T Consensus 525 nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 525 YPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred CcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCce---eEeCcCCCCCCCC-CEEEEEEEEe
Confidence 99999999999876544 4789999999876 8999999999999999986 9999999888753 3455555554
No 127
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.98 E-value=2.8e-09 Score=123.08 Aligned_cols=124 Identities=24% Similarity=0.393 Sum_probs=96.4
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
..+|.|+|+.+.+++....-. .+ .+....||||+|.+.| ....+|+++.|+.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~-----~~-------------------~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~ 523 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKT-----HF-------------------DSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTW 523 (598)
T ss_pred CcEEEEEEEEccCccCCCccc-----cC-------------------CCCCCCCceEEEEEEECCCCCcccceeccCCCC
Confidence 468999999999875321000 00 0111279999999976 2345999988899
Q ss_pred CCeeeeeEEEeecCCCc-eEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 88 NPIWNEHFKIPLAHPVS-QIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~-~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
||.|||+|.|++..+.. -|.|.|+|+|..+ +++||+..||+..|..|.. .++|.+..|.+.. ..+|.++++|
T Consensus 524 nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 524 TPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred CCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCC-CCeeEEEEEe
Confidence 99999999999876654 4799999999865 8999999999999999987 7899999998865 3577777765
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.95 E-value=6e-09 Score=120.26 Aligned_cols=96 Identities=24% Similarity=0.475 Sum_probs=81.9
Q ss_pred CCcEEEEEECC----EEEEEeeeccCCCCCeeeeeEEEeecCCCc-eEEEEEEeCCCCC-CcceeEEEecccccccCCce
Q 003153 64 SDPYVTVCLGG----ATVARTRVISNCQNPIWNEHFKIPLAHPVS-QIEFYVKDNDVFG-ADLIGVATIPAARIKSGESI 137 (843)
Q Consensus 64 ~DpYv~v~l~~----~~~~rT~vi~~~~nP~WnE~f~~~v~~~~~-~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~ 137 (843)
.||||+|.+.| ....||+++.++.||+|||.|.|.+..+.- -|.|.|+|+|..+ +++||+..||+..|..|..
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR- 557 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR- 557 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc-
Confidence 79999999975 345699999999999999999999876654 4799999998766 8999999999999999987
Q ss_pred eeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 138 SDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 138 ~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
.++|.+..|.+.. ...|.+++.|
T Consensus 558 --~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 558 --AFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred --eEEccCCCcCCCC-CeeEEEEEEe
Confidence 7899999998865 4577777765
No 129
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.94 E-value=4.9e-09 Score=121.65 Aligned_cols=139 Identities=18% Similarity=0.134 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
+.+.+.+.++|.+||++|+|+.-.|-| ...+.++|+.||+|||+|+|++ +....+...
T Consensus 317 ~~~~~~~~~~I~~A~~~I~I~tpYfip----------------~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~----- 374 (483)
T PRK01642 317 ETIHQFLLTAIYSARERLWITTPYFVP----------------DEDLLAALKTAALRGVDVRIII-PSKNDSLLV----- 374 (483)
T ss_pred hHHHHHHHHHHHHhccEEEEEcCCcCC----------------CHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHH-----
Confidence 457778999999999999998632322 2589999999999999999998 543211100
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
........+.|...||++..+.. ...|.|++|||++ +++||+.|++..-+.
T Consensus 375 ---~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~--------~~~vGS~N~d~rS~~- 425 (483)
T PRK01642 375 ---FWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE--------LALVGTVNLDMRSFW- 425 (483)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC--------EEEeeCCcCCHhHHh-
Confidence 00012234456678999875421 1279999999998 999999999772221
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh-HHHHHHHHHHHHHhhhcc
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP-AAYDVLTNFEQRWRKATK 445 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~~ 445 (843)
--+++.+.+.++ .+..+.+.|.++|..+..
T Consensus 426 -------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~ 456 (483)
T PRK01642 426 -------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARSRE 456 (483)
T ss_pred -------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 123688999998 579999999999986543
No 130
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1e-09 Score=124.16 Aligned_cols=108 Identities=33% Similarity=0.539 Sum_probs=89.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
+|.|+|.|++|++|+.++..+. +||||++.+-. ..+.+|.+.+++.
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~ 346 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------SDPYVKVTLLDGDKRLSKKKTSVKKKTL 346 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------CCccEEEEEecCCceeeeeeeecccCCC
Confidence 6999999999999999887664 89999999854 3566999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPP 151 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~ 151 (843)
||+|||+|.|.++.. ...|.|+|||+|.++ +++||.+.+.... .|....+|..++...+++.
T Consensus 347 npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 347 NPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred CCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 999999999988642 235899999999998 7899998888765 4555778888877666653
No 131
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.90 E-value=6e-09 Score=120.13 Aligned_cols=122 Identities=30% Similarity=0.493 Sum_probs=97.7
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeecc-CCCC
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVIS-NCQN 88 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~-~~~n 88 (843)
+|.|+|+.+.+++..-..+. ....+||||.|.+.| +...+|+++. |+.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~--------------------------~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~Ngfn 670 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK--------------------------FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFN 670 (746)
T ss_pred eeEEEEEecCcccCCCCCCc--------------------------ccccCCCCEEEEEcccccchhhhhceeeccCCcC
Confidence 79999999997754321110 012389999999987 3556999555 5999
Q ss_pred CeeeeeEEEeecCCCce-EEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 89 PIWNEHFKIPLAHPVSQ-IEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 89 P~WnE~f~~~v~~~~~~-l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
|.|+|+|.|++..+.-. |.|.|+|.|..+ ++|+|+..||+.++..|.. -++|.+..|+... ...|.+++++.+
T Consensus 671 P~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~-~asLfv~i~~~~ 745 (746)
T KOG0169|consen 671 PIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALS-SASLFVRIAIVE 745 (746)
T ss_pred cccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCcee---eeeecCCCCcccc-ceeEEEEEEEec
Confidence 99999999999887665 799999999998 9999999999999999977 6899999888753 567888887754
No 132
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.90 E-value=4.7e-10 Score=75.44 Aligned_cols=27 Identities=59% Similarity=1.027 Sum_probs=18.6
Q ss_pred cccCccceEEeccCCCCCCcceEEEeccccCCCcc
Q 003153 347 LFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGR 381 (843)
Q Consensus 347 ~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R 381 (843)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 46899999999998 9999999999854
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=98.89 E-value=1.1e-08 Score=117.73 Aligned_cols=98 Identities=28% Similarity=0.407 Sum_probs=83.5
Q ss_pred CCcEEEEEECC----EEEEEeeeccCCCCCee-eeeEEEeecCCCc-eEEEEEEeCCCCC-CcceeEEEecccccccCCc
Q 003153 64 SDPYVTVCLGG----ATVARTRVISNCQNPIW-NEHFKIPLAHPVS-QIEFYVKDNDVFG-ADLIGVATIPAARIKSGES 136 (843)
Q Consensus 64 ~DpYv~v~l~~----~~~~rT~vi~~~~nP~W-nE~f~~~v~~~~~-~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~ 136 (843)
.||||+|.+.+ ....||+++.|+.||.| ||+|.|++..+.- -|.|.|+|.|..+ +++||++.||++.|..|..
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 79999999876 24469999999999999 9999999876653 4899999998765 8999999999999999877
Q ss_pred eeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 137 ISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 137 ~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
.++|.+..|++.. ..+|.+++.+.+
T Consensus 538 ---~VpL~~~~G~~l~-~atLfv~~~~~~ 562 (567)
T PLN02228 538 ---AVRLHDRAGKAYK-NTRLLVSFALDP 562 (567)
T ss_pred ---EEEccCCCCCCCC-CeEEEEEEEEcC
Confidence 7899999998854 468888888765
No 134
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=9.3e-09 Score=122.71 Aligned_cols=133 Identities=26% Similarity=0.420 Sum_probs=106.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|.+|++|...+..-. ++.|||+++...+...+||++.+++.||+||
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~----------------------------~~vDpyit~~~~~r~~gkT~v~~nt~nPvwN 487 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTIN----------------------------GTVDPYITVTFSDRVIGKTRVKKNTLNPVWN 487 (1227)
T ss_pred EEEEEEEeeccCccccccccc----------------------------CCCCceEEEEeccccCCccceeeccCCcccc
Confidence 999999999999987763221 2389999999998888899999999999999
Q ss_pred eeEEEeecCCCceEEEEEEeCCCC-CCcceeEEEecccccccCCcee-eEEEcccCCCCCCCCcceEEEEEEEEeccCCC
Q 003153 93 EHFKIPLAHPVSQIEFYVKDNDVF-GADLIGVATIPAARIKSGESIS-DWFPILGLYGKPPKSETAVFMEMRFLPCEENP 170 (843)
Q Consensus 93 E~f~~~v~~~~~~l~~~V~d~d~~-~~~~IG~~~ipl~~l~~g~~~~-~w~~L~~~~~~~~~~~g~l~l~l~~~~~~~~~ 170 (843)
|+|.+.+......|.++|||.+.+ +|.++|++.+++..+....... .-+.+. .+. +..|.|...++|+|...+.
T Consensus 488 Et~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~---k~vGrL~yDl~ffp~~e~k 563 (1227)
T COG5038 488 ETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNT---KNVGRLTYDLRFFPVIEDK 563 (1227)
T ss_pred ceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccC---ccceEEEEeeeeecccCCc
Confidence 999999998888999999995555 5999999999998886533332 244443 233 3479999999999998877
Q ss_pred ccccCCC
Q 003153 171 LYRYGIA 177 (843)
Q Consensus 171 ~~~~gi~ 177 (843)
.-..+..
T Consensus 564 ~~~~~s~ 570 (1227)
T COG5038 564 KELKGSV 570 (1227)
T ss_pred ccccccc
Confidence 6555443
No 135
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.86 E-value=5.5e-09 Score=124.60 Aligned_cols=123 Identities=27% Similarity=0.427 Sum_probs=101.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
.|.|+|.+..|.||++.|..+. +||||++.+.+..+++|++++.++||+|
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------sDpfv~~~ln~k~vyktkv~KktlNPvw 1088 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------SDPFVKLFLNEKSVYKTKVVKKTLNPVW 1088 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------CCceEEEEecceecccccchhccCCCCc
Confidence 6999999999999999888775 8999999999988999999999999999
Q ss_pred eeeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEec
Q 003153 92 NEHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPC 166 (843)
Q Consensus 92 nE~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~ 166 (843)
||+|.+++.... ..+.+.|+|+|.-. +++||.+.+++..+..+.....-.+|.++. .....|.++....|.+.
T Consensus 1089 NEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1089 NEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred cccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEeecceecchh
Confidence 999999998544 45899999999876 799999999999999887766666664332 12335666655555443
No 136
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.86 E-value=1e-08 Score=91.27 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=72.4
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
|+|+|..|+++...+... ++ ..+||||+|.+++..++||++ +.||.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~-----~~----------------------~~~etyV~IKved~~kaRTr~---srnd~WnE~ 50 (109)
T cd08689 1 LTITITSARDVDHIASPR-----FS----------------------KRPETYVSIKVEDVERARTKP---SRNDRWNED 50 (109)
T ss_pred CEEEEEEEecCccccchh-----hc----------------------cCCCcEEEEEECCEEEEeccC---CCCCcccce
Confidence 689999999998765311 11 128999999999988899988 699999999
Q ss_pred EEEeecCCCceEEEEEEeCCCCCCcceeEEEeccccccc
Q 003153 95 FKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKS 133 (843)
Q Consensus 95 f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~ 133 (843)
|.|++. ...+++|+|||+..-..-.||...+.++.|..
T Consensus 51 F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 51 FEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 999995 57789999999866556789999999988864
No 137
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.82 E-value=1.6e-08 Score=95.69 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=76.9
Q ss_pred EEEEEEEeeCCCCCCC--chhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCC--
Q 003153 15 LDLKIVEARRLPNMDL--VTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQN-- 88 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~n-- 88 (843)
|+|.|.+|++++..+. .+. ..+||||++.+.+ ...++|.|..++.|
T Consensus 2 LRViIw~~~~v~~~~~~~~g~----------------------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~ 53 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE----------------------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGE 53 (133)
T ss_pred EEEEEEECcCCcccccccCCc----------------------------cccCeEEEEEEccCcccccccceEEecCCCC
Confidence 7899999999775543 221 1289999999987 46789999999999
Q ss_pred CeeeeeEEEeecCC------------------------CceEEEEEEeCCCCC-CcceeEEEecccccccCCc
Q 003153 89 PIWNEHFKIPLAHP------------------------VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES 136 (843)
Q Consensus 89 P~WnE~f~~~v~~~------------------------~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~ 136 (843)
|.||++|.|++..+ ...|.++|||+|.++ +++||.+.+++..+..+..
T Consensus 54 ~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 54 GNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 99999999987651 134899999999998 8999999999998876654
No 138
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.79 E-value=3.2e-08 Score=111.96 Aligned_cols=135 Identities=17% Similarity=0.131 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
..+.+.+.++|.+|+++|+|+.=.|.| +..|.++|+.+++|||+|+||+ +..+....
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p----------------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~------ 261 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFP----------------GYRLLRALRNAARRGVRVRLIL-QGEPDMPI------ 261 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCC----------------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHH------
Confidence 456778999999999999998522322 2589999999999999999998 65432210
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
+..........|.+.||++..+.. ...|.|++|||++ +++||+.||+. |...
T Consensus 262 --~~~a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 262 --VRVGARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 000012345567788999864321 1379999999998 99999999987 4321
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChH-HHHHHHHHHHHHh
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPA-AYDVLTNFEQRWR 441 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~~rW~ 441 (843)
--.++.+.|.+|. +..+...|.+.+.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 1126788888885 5888889999886
No 139
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.69 E-value=7.6e-08 Score=109.91 Aligned_cols=124 Identities=31% Similarity=0.483 Sum_probs=99.0
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE-----EEEEeeeccC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA-----TVARTRVISN 85 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~-----~~~rT~vi~~ 85 (843)
+--+|.|.|+.|+.|+...... ..|||.|.+.|+ +..+|.|+.|
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr~i-------------------------------~cPfVevEiiGa~~Dt~~~~t~~V~dN 1111 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGRSI-------------------------------ACPFVEVEIIGAEYDTNKFKTTVVNDN 1111 (1267)
T ss_pred cceEEEEEEeeccccccCCCCc-------------------------------cCCcEEEEEeccccCCCceEEEEeccC
Confidence 4467899999999999543222 579999999873 4456667788
Q ss_pred CCCCeee-eeEEEeecCCCc-eEEEEEEeCCCCCC-cceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEE
Q 003153 86 CQNPIWN-EHFKIPLAHPVS-QIEFYVKDNDVFGA-DLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMR 162 (843)
Q Consensus 86 ~~nP~Wn-E~f~~~v~~~~~-~l~~~V~d~d~~~~-~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~ 162 (843)
+.||+|| |.|+|.+.+|.- -|.|.|+|.|.+++ .|||++..|+..|..|.. .+||.+...+.+. -..|.|.++
T Consensus 1112 GlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfR---sVpLkN~ySEdlE-LaSLLv~i~ 1187 (1267)
T KOG1264|consen 1112 GLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGFR---SVPLKNGYSEDLE-LASLLVFIE 1187 (1267)
T ss_pred CCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccce---eeecccCchhhhh-hhhheeeeE
Confidence 9999999 999999988765 48999999999994 899999999999999876 6899777665543 356778888
Q ss_pred EEeccCC
Q 003153 163 FLPCEEN 169 (843)
Q Consensus 163 ~~~~~~~ 169 (843)
..|+...
T Consensus 1188 m~~~~~~ 1194 (1267)
T KOG1264|consen 1188 MRPVLES 1194 (1267)
T ss_pred eccccCc
Confidence 7787653
No 140
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.68 E-value=6.2e-08 Score=106.74 Aligned_cols=130 Identities=26% Similarity=0.445 Sum_probs=103.0
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
-|.|.|+|..|++||-||..+. +.|.||.|.++. ..+||.|..+++||.|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd-----------------------------~tdafveik~~n-~t~ktdvf~kslnp~w 51 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASD-----------------------------LTDAFVEIKFAN-TTFKTDVFLKSLNPQW 51 (1169)
T ss_pred CCcceeEEEeccCCcccccccc-----------------------------cchheeEEEecc-cceehhhhhhhcCCcc
Confidence 4889999999999999997664 379999999998 4569999999999999
Q ss_pred e-eeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEeccccccc----------CCceeeEEEcccCCCCCCCCcce
Q 003153 92 N-EHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKS----------GESISDWFPILGLYGKPPKSETA 156 (843)
Q Consensus 92 n-E~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~----------g~~~~~w~~L~~~~~~~~~~~g~ 156 (843)
| +-|.|.|.+. ...|.+++.|+|..+ ++-||.+.|.++.+.- |..+.+|||+.+.-.. ..|+
T Consensus 52 nsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irge 128 (1169)
T KOG1031|consen 52 NSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGE 128 (1169)
T ss_pred cccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccce
Confidence 9 6789998763 345999999999998 7999999999887743 3457899999877432 3789
Q ss_pred EEEEEEEEeccCCCcccc
Q 003153 157 VFMEMRFLPCEENPLYRY 174 (843)
Q Consensus 157 l~l~l~~~~~~~~~~~~~ 174 (843)
|.+-++.--+...-.|.+
T Consensus 129 invivkvdlfndlnkf~q 146 (1169)
T KOG1031|consen 129 INVIVKVDLFNDLNKFPQ 146 (1169)
T ss_pred eEEEEEEeehhhhhhccc
Confidence 988877444433333433
No 141
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=101.95 Aligned_cols=177 Identities=19% Similarity=0.293 Sum_probs=114.3
Q ss_pred cCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHH
Q 003153 194 NGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGD 273 (843)
Q Consensus 194 ~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~ 273 (843)
.|...+.|..+ .|.-....|+ ..-.++|...|..|+++|||......|......+ .+ -+.|++
T Consensus 254 dg~~~~~y~sa------SP~~~~~~gr----t~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~------fw~iDd 316 (456)
T KOG3603|consen 254 DGTPATPYISA------SPPPLNPSGR----TWDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HR------FWEIDD 316 (456)
T ss_pred CCCCcceEEcc------CCCCCCCCCC----chhHHHHHHHHHHHhhheeeeehhccchheeecC-cc------hhhhhH
Confidence 45556666654 3444444565 4568999999999999999997777776444432 21 258999
Q ss_pred HHHHhhhcCCeEEEEEe--CCcccccccccccccccCCChHHHHhhhcCCCcEEEe--CCCCCCCccchhhccccccccc
Q 003153 274 LLKYKSQEGVRVLLLVW--DDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVHCVL--SPRYASSKLSIFKQQVVGTLFT 349 (843)
Q Consensus 274 lL~~ka~~GV~VriLvw--d~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~--~~~~~~~~~~~~~~~~~~~~~s 349 (843)
+|+++|-|||+||+|+- +.........+.+ -+.....+++..|+|++ .|..... .++....
T Consensus 317 aiR~aa~RgV~vR~lvs~~~~~~~~m~~~L~S-------Lq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv 381 (456)
T KOG3603|consen 317 AIRRAAVRGVKVRLLVSCWKHSEPSMFRFLRS-------LQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARV 381 (456)
T ss_pred HHHHHhhcceEEEEEEeccCCCCchHHHHHHH-------HHHhcCccccCceEEEEEEeCCCccc--------cCchhhh
Confidence 99999999999999992 2221111111110 01112223466677664 3443211 2233457
Q ss_pred CccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeee-----
Q 003153 350 HHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKI----- 424 (843)
Q Consensus 350 hHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v----- 424 (843)
+|.|++|-+. .||+|.-|.+.++|-... -+++.|
T Consensus 382 ~HnKymVTe~---------aayIGTSNws~dYf~~Ta--------------------------------G~~ivv~q~~~ 420 (456)
T KOG3603|consen 382 NHNKYMVTES---------AAYIGTSNWSGDYFTSTA--------------------------------GTAIVVRQTPH 420 (456)
T ss_pred ccceeEEeec---------ceeeeccCCCccceeccC--------------------------------ceEEEEecCCC
Confidence 9999999987 799999999997773211 123333
Q ss_pred eChHHHHHHHHHHHHHhhh
Q 003153 425 EGPAAYDVLTNFEQRWRKA 443 (843)
Q Consensus 425 ~Gpaa~dl~~~F~~rW~~~ 443 (843)
.|+++.+|...|+.+|+..
T Consensus 421 ~~~~~~ql~~vFeRdW~S~ 439 (456)
T KOG3603|consen 421 KGTLVSQLKAVFERDWNST 439 (456)
T ss_pred CCcHHHHHHHHHhhccccc
Confidence 4678999999999999864
No 142
>PRK05443 polyphosphate kinase; Provisional
Probab=98.61 E-value=4.9e-07 Score=107.68 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=86.7
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCh
Q 003153 540 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSA 614 (843)
Q Consensus 540 ~ayl~aI~~Ak~-----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~ 614 (843)
+..++.|++|.+ .|.|+-..+.+. ..+..++..|.++| ++|.|+++..+-.+
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~Aa~~G--k~V~vlve~karfd---- 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEAAENG--KQVTVLVELKARFD---- 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHHHHcC--CEEEEEEccCcccc----
Confidence 467889999999 899976555422 35677788886655 99999999643110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEe
Q 003153 615 SVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVH 694 (843)
Q Consensus 615 ~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 694 (843)
.++.. ..+++|.++|+.+ +|.. . ...+|
T Consensus 408 ------e~~n~-------~~~~~L~~aGv~V--------~y~~-----------~--------------------~~k~H 435 (691)
T PRK05443 408 ------EEANI-------RWARRLEEAGVHV--------VYGV-----------V--------------------GLKTH 435 (691)
T ss_pred ------HHHHH-------HHHHHHHHcCCEE--------EEcc-----------C--------------------Cccce
Confidence 11111 1267899999864 2321 1 12699
Q ss_pred eeEEEEeee-------EEEEcccCccCCCcCCCCCcceEEeeecCCcc
Q 003153 695 AKGMVVDDE-------YVILGSANINQRSLAGGRDTEIAMGAYQPHHT 735 (843)
Q Consensus 695 sKlmIVDD~-------~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~ 735 (843)
||+|+||++ |+.|||+|+|.||...+ +|+++.+.+++.+
T Consensus 436 aK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 436 AKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred eEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 999999999 99999999999999854 9999998887654
No 143
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.55 E-value=5.6e-08 Score=66.17 Aligned_cols=25 Identities=52% Similarity=0.764 Sum_probs=24.0
Q ss_pred EEeeeEEEEeeeEEEEcccCccCCC
Q 003153 692 YVHAKGMVVDDEYVILGSANINQRS 716 (843)
Q Consensus 692 yvHsKlmIVDD~~~iiGSANin~RS 716 (843)
+.|+|+||||+++++|||+||+.||
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred cEEeEEEEEcCCEEEEeCccCCCCC
Confidence 6999999999999999999999987
No 144
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.54 E-value=5.8e-07 Score=102.57 Aligned_cols=137 Identities=17% Similarity=0.197 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCC--CCCCC
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPE--GAPSS 613 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~pe--g~~~~ 613 (843)
.....+++++|++|+++||||..||-... ++.++..+|.+|.+++++++|+|++.-+=. |-..+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 46788999999999999999999997422 267888899888888899999999984210 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeE
Q 003153 614 ASVQEILYWQGQTRQMMYEIIAQELNSMQ--MENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMI 691 (843)
Q Consensus 614 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~g--~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 691 (843)
.. .. .....+..|.+++ ++ +.+|.+..+ .+....
T Consensus 100 ~~---------~~---~~~~~~~~l~~~~~gv~-------v~~f~~p~~-------------------------~~e~~g 135 (451)
T PRK09428 100 AA---------SN---TNADWYCEMAQEYPGVD-------IPVYGVPVN-------------------------TREALG 135 (451)
T ss_pred CC---------CC---cCHHHHHHHHHhCCCce-------EEEcCCccc-------------------------cchhhh
Confidence 00 00 0011245566543 54 345532110 000011
Q ss_pred EEeeeEEEEeeeEEEEcccCccCCCcCC----CCCcceEEeeecCC
Q 003153 692 YVHAKGMVVDDEYVILGSANINQRSLAG----GRDTEIAMGAYQPH 733 (843)
Q Consensus 692 yvHsKlmIVDD~~~iiGSANin~RSm~~----~rDsEi~v~i~d~~ 733 (843)
-.|-|++||||++++.| ||||+-.+.. ..|. .+.|.+|.
T Consensus 136 r~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 136 VLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred hceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 37999999999999999 8999976653 2354 44566553
No 145
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.30 E-value=2e-07 Score=105.52 Aligned_cols=91 Identities=25% Similarity=0.441 Sum_probs=79.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE------EEEEeeeccC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA------TVARTRVISN 85 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~------~~~rT~vi~~ 85 (843)
+-+|.|.|+-|+++-+.|.++. |||||+|.+.+. .+.||+|++.
T Consensus 946 ~q~L~veVlhA~diipLD~NGl------------------------------SDPFVviEl~P~~~fp~v~~q~T~V~~r 995 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL------------------------------SDPFVVIELIPKFRFPAVPVQKTKVVSR 995 (1103)
T ss_pred ccchhhhhhccccccccCCCCC------------------------------CCCeEEEEeccccccccchhhhhhhhhc
Confidence 5678899999999999998875 999999999873 5679999999
Q ss_pred CCCCeeeeeEEEeecCC-----CceEEEEEEeCCCCC-CcceeEEEecccccc
Q 003153 86 CQNPIWNEHFKIPLAHP-----VSQIEFYVKDNDVFG-ADLIGVATIPAARIK 132 (843)
Q Consensus 86 ~~nP~WnE~f~~~v~~~-----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~ 132 (843)
+.||+|+|+|.|.|+.. ...|.|+|+|+|.+. ++|-|++.+.+..+.
T Consensus 996 tLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 996 TLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 99999999999998652 224899999999998 799999999998875
No 146
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.22 E-value=3.4e-07 Score=61.73 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=17.3
Q ss_pred EEeeeEEEEeeeEEEEcccCccCCC
Q 003153 692 YVHAKGMVVDDEYVILGSANINQRS 716 (843)
Q Consensus 692 yvHsKlmIVDD~~~iiGSANin~RS 716 (843)
..|+|++||||++++|||+||+.|+
T Consensus 4 ~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 4 SHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp EE---EEEETTTEEEEE---SSHHH
T ss_pred ceeeEEEEEcCCEEEECceecCCCC
Confidence 6899999999999999999999764
No 147
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.21 E-value=6.1e-06 Score=95.17 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=95.2
Q ss_pred HHHHHHHHhccceEEEEE-EeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCccccccccccccccc
Q 003153 229 EDICHAILEAHHLVYIVG-WSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVM 307 (843)
Q Consensus 229 ~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~ 307 (843)
..+..+|.+|+++|+|+. |.+. +..+.++|+.++++||+|+|++ ++.+...... +
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~-----------------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~------~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVP-----------------DRELLAALKAAARRGVDVRIII-PSLGANDSAI------V 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCC-----------------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHH------H
Confidence 679999999999999986 5331 2578899999999999999998 6321111000 0
Q ss_pred CCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCC
Q 003153 308 QTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEH 387 (843)
Q Consensus 308 ~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H 387 (843)
........+.+...|+++...+. + ...|.|++|||++ +++||+.|++..-+.
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~---- 380 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDDR--------TVLVGSANLDPRSLR---- 380 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcCC--------EEEEeCCcCCHhHHH----
Confidence 00012345556678888764432 0 2489999999998 999999999983321
Q ss_pred CccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh-HHHHHHHHHHHHHhhh
Q 003153 388 RLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP-AAYDVLTNFEQRWRKA 443 (843)
Q Consensus 388 ~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 443 (843)
.+ -.+.+.|+.+ .+..+...|...|..+
T Consensus 381 -----------lN-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 381 -----------LN-----------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -----------Hh-----------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 01 1578888888 6889999999777654
No 148
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.07 E-value=9.7e-07 Score=100.16 Aligned_cols=88 Identities=25% Similarity=0.418 Sum_probs=70.7
Q ss_pred EEeeeccCCCCCeeeeeEEEeecCCC-ceEEEEEEeCCCC-------------------------------------CCc
Q 003153 78 ARTRVISNCQNPIWNEHFKIPLAHPV-SQIEFYVKDNDVF-------------------------------------GAD 119 (843)
Q Consensus 78 ~rT~vi~~~~nP~WnE~f~~~v~~~~-~~l~~~V~d~d~~-------------------------------------~~~ 119 (843)
.-|.|.+.+.||+|+|.|.|.+.+-. ..+.+-+||+|-- .|+
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 46788888999999999999997744 3588899987511 168
Q ss_pred ceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEecc
Q 003153 120 LIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPCE 167 (843)
Q Consensus 120 ~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~ 167 (843)
|+|.+.||+.+|... .++.||.|...+.++ +..|.++++++.....
T Consensus 259 FLGciNipl~EiP~~-Gld~WFkLepRS~~S-~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPPD-GLDQWFKLEPRSDKS-KVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cccccccchhcCCcc-hHHHHhccCcccccc-cccceEEEEEEEeeec
Confidence 999999999999863 468999998887765 6789999999876544
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.91 E-value=1.1e-05 Score=74.27 Aligned_cols=83 Identities=27% Similarity=0.505 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEEC---CEEEEEeeeccCCCCCeeeeeEEEeec--------C--------CCceEEEEEEeCCCC-----
Q 003153 61 MITSDPYVTVCLG---GATVARTRVISNCQNPIWNEHFKIPLA--------H--------PVSQIEFYVKDNDVF----- 116 (843)
Q Consensus 61 ~~~~DpYv~v~l~---~~~~~rT~vi~~~~nP~WnE~f~~~v~--------~--------~~~~l~~~V~d~d~~----- 116 (843)
..+.++||++.+. +.+..+|+++.++--|.|+-++.|+|. . ...++.|+||...+.
T Consensus 30 ~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~ 109 (143)
T cd08683 30 TVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDT 109 (143)
T ss_pred ecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccce
Confidence 4458999999964 356679999999999999999999986 1 123589999986533
Q ss_pred ------CCcceeEEEeccccccc-CCceeeEEEc
Q 003153 117 ------GADLIGVATIPAARIKS-GESISDWFPI 143 (843)
Q Consensus 117 ------~~~~IG~~~ipl~~l~~-g~~~~~w~~L 143 (843)
+|-+||.+.||+.++.. ...+.+|||+
T Consensus 110 ~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 110 IKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred eccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 34589999999999876 4457899986
No 150
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.76 E-value=0.00043 Score=74.73 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhc--CCeEEEEEeCCc-ccccccc
Q 003153 224 HERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQE--GVRVLLLVWDDK-TSHSKFF 300 (843)
Q Consensus 224 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~--GV~VriLvwd~~-~s~~~~~ 300 (843)
|.++|+.+...|.+||+.|+|+.--+.. ....|.+.|..+-+. -++|.||+ |.. +....+.
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasLYlG~---------------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~ 100 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASLYLGK---------------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPN 100 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeeeccch---------------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcc
Confidence 4789999999999999999998643321 135788888877654 79999998 764 2211110
Q ss_pred cccccccCCChHHHHhhhcCCCcEEEeC--CCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCC
Q 003153 301 INTAGVMQTHDEETRKFFKHSSVHCVLS--PRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLC 378 (843)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~v~v~~~--~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~ 378 (843)
-.+.-+. ..-.+++ ...|.|.++ |.+.+....+.-..........|.|+.-+|.. ..+-|.|++
T Consensus 101 ~~s~llp---~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls 166 (469)
T KOG3964|consen 101 SCSALLP---VWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLS 166 (469)
T ss_pred cchhhch---HHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccch
Confidence 0000000 0011122 223444433 22111111110000111234689999999985 578899999
Q ss_pred CcccC
Q 003153 379 DGRYD 383 (843)
Q Consensus 379 ~~R~D 383 (843)
.+++-
T Consensus 167 ~dyfT 171 (469)
T KOG3964|consen 167 NDYFT 171 (469)
T ss_pred hhhhc
Confidence 95543
No 151
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.72 E-value=5.2e-05 Score=86.92 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=82.4
Q ss_pred CCCcEEEEEECCE---EEEEeeeccCCCCCeeeeeEEEeecCC----------------CceEEEEEEe-CCCCC-Ccce
Q 003153 63 TSDPYVTVCLGGA---TVARTRVISNCQNPIWNEHFKIPLAHP----------------VSQIEFYVKD-NDVFG-ADLI 121 (843)
Q Consensus 63 ~~DpYv~v~l~~~---~~~rT~vi~~~~nP~WnE~f~~~v~~~----------------~~~l~~~V~d-~d~~~-~~~I 121 (843)
++|||+++...+. ...+|++++.+.+|.|+|.|.|.+... ...|.+.+|+ .+.+. ++|+
T Consensus 150 ~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~Fl 229 (800)
T KOG2059|consen 150 QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFL 229 (800)
T ss_pred CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhc
Confidence 3899999998762 235899999999999999999988654 2347889998 45544 8999
Q ss_pred eEEEecccccccCCceeeEEEcccC-CCCCC---CCcceEEEEEEEEeccCCC
Q 003153 122 GVATIPAARIKSGESISDWFPILGL-YGKPP---KSETAVFMEMRFLPCEENP 170 (843)
Q Consensus 122 G~~~ipl~~l~~g~~~~~w~~L~~~-~~~~~---~~~g~l~l~l~~~~~~~~~ 170 (843)
|++.+|+..+.....-+.||-|... +|+.. ..-|.+++.+.|+.-...+
T Consensus 230 Gevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 230 GEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred eeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 9999999998755566789999765 33322 2357899999988755444
No 152
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.70 E-value=0.00025 Score=74.95 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=113.0
Q ss_pred EEEEEeccCCCccccCCCCCCCCCCCCCcCCccccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhcc
Q 003153 160 EMRFLPCEENPLYRYGIAANPDSFGVNNSYFPVRNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAH 239 (843)
Q Consensus 160 ~l~~~~~~~~~~~~~gi~~~~~~~gv~~s~~p~~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak 239 (843)
+.+|.|...+-.-- .-..|.|. ....+.-.+|++|.-- + .++. ..+=+.+...|.+|+
T Consensus 90 S~TYwP~~SD~~~P------~LdLGWP~-~~~~~g~Tr~~vy~qP--p--------~~~~-----p~IKE~vR~~I~~A~ 147 (284)
T PF07894_consen 90 SGTYWPMQSDTEPP------PLDLGWPE-TPSYKGVTRATVYFQP--P--------KDGQ-----PHIKEVVRRMIQQAQ 147 (284)
T ss_pred CcccCCCcCCCCCC------CCCCCCCC-CCcccCCceEEEEeCC--C--------CCCC-----CCHHHHHHHHHHHhc
Confidence 67888877653311 12234444 2233455889999752 1 1222 356789999999999
Q ss_pred ceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccccccCCChHHHHhhhc
Q 003153 240 HLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFK 319 (843)
Q Consensus 240 ~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 319 (843)
+-|-|..=.|. |. .-+.|+|.++-+|||-||||+ |...... ++....-++. ....++
T Consensus 148 kVIAIVMD~FT-------D~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~~--Fl~Mc~~~~v----~~~~~~ 204 (284)
T PF07894_consen 148 KVIAIVMDVFT-------DV---------DIFCDLLEAANKRGVPVYILL-DEQNLPH--FLEMCEKLGV----NLQHLK 204 (284)
T ss_pred ceeEEEeeccc-------cH---------HHHHHHHHHHHhcCCcEEEEe-chhcChH--HHHHHHHCCC----ChhhcC
Confidence 99988754332 11 467777766669999999998 8764321 2221111111 112233
Q ss_pred CCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccC
Q 003153 320 HSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQD 399 (843)
Q Consensus 320 ~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~ 399 (843)
+-.|+++-- ..+............|+|+++||++ .+..|+--++|. +..-|+
T Consensus 205 nmrVRsv~G-------~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs--~~~~~r----------- 256 (284)
T PF07894_consen 205 NMRVRSVTG-------CTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWS--SSRVHR----------- 256 (284)
T ss_pred CeEEEEecC-------CeeecCCCCeeeCcccceeEEEecc--------cccccccceeec--cccccc-----------
Confidence 333333311 1122211222345789999999998 889999888772 222222
Q ss_pred CCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHH
Q 003153 400 DYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRW 440 (843)
Q Consensus 400 d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW 440 (843)
.+-..+.|.+|....+-|+.-.
T Consensus 257 -------------------~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 257 -------------------NLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred -------------------ceeEEEeccccchHhHHHHHHH
Confidence 3678899999999988887653
No 153
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00011 Score=82.61 Aligned_cols=101 Identities=25% Similarity=0.355 Sum_probs=82.7
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC------EEEEEeeeccCCC
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG------ATVARTRVISNCQ 87 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~------~~~~rT~vi~~~~ 87 (843)
.++|.|+.|.+|.-... + .-.|||.|.+.| .+++.|+...|+.
T Consensus 1126 kvtvkvvaandlkwqts-g------------------------------mFrPFVEV~ivGP~lsDKKRK~~TKtKsnnW 1174 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTS-G------------------------------MFRPFVEVHIVGPHLSDKKRKFSTKTKSNNW 1174 (1283)
T ss_pred eEEEEEEecccccchhc-c------------------------------ccccceEEEEecCcccchhhhccccccCCCc
Confidence 46888999988874321 1 157999999865 4677899999999
Q ss_pred CCeeeeeEEEeecCCCc----eEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEccc
Q 003153 88 NPIWNEHFKIPLAHPVS----QIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILG 145 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~----~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 145 (843)
.|.+||+|+|.+..... +|.|.|+|+.... |..+|.+.+++.++......-.|+||..
T Consensus 1175 aPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1175 APKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred CcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 99999999999965332 5899999998887 7999999999999998778889999943
No 154
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.62 E-value=4.2e-05 Score=91.45 Aligned_cols=104 Identities=20% Similarity=0.351 Sum_probs=84.2
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
-.|+|.|-|.-|++|+-..-.. -+||||+.++.+ ..+.||++++++
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~------------------------------~P~pyVK~YLlPdp~k~sKRKTKvvrkt 1571 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQ------------------------------DPDPYVKTYLLPDPRKTSKRKTKVVRKT 1571 (1639)
T ss_pred cCceEEEEhhhhcccccccCCC------------------------------CCCcceeEEecCCchHhhhhhhcccccc
Confidence 3799999999999996432222 289999999975 356699999999
Q ss_pred CCCeeeeeEEEe-ecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 87 QNPIWNEHFKIP-LAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 87 ~nP~WnE~f~~~-v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
.||.|||..... .+. ...+|.++||..+.+. +.++|.+.||+.++...++..+||+|-
T Consensus 1572 ~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1572 RNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred CCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999999998765 222 2356999999998887 799999999999998777777999993
No 155
>PF13918 PLDc_3: PLD-like domain
Probab=97.60 E-value=0.00053 Score=67.68 Aligned_cols=59 Identities=29% Similarity=0.519 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccceEEEeecccccC------CCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 003153 539 QTAYIQAIRSAQHFIYIENQYFLGS------SYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAP 611 (843)
Q Consensus 539 ~~ayl~aI~~Ak~~IYIEnQyF~~~------~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~ 611 (843)
.+|.++.|..|++||||+-.-+.+. ..+||.. +-|++- +++. ++|+|++++..|...+|
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~I-----------D~ALR~-AA~~--R~V~VRlLIS~W~ht~p 148 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVI-----------DDALRR-AAIE--RGVKVRLLISCWKHTDP 148 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhH-----------HHHHHH-HHHH--cCCeEEEEEeecCCCCh
Confidence 5699999999999999996655543 2357632 223332 2233 45999999999875443
No 156
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.49 E-value=8.4e-05 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.2
Q ss_pred ccCccceEEeccCCCCCCcceEEEeccccCCC
Q 003153 348 FTHHQKCVIVDTQASGNNRKITAFIGGLDLCD 379 (843)
Q Consensus 348 ~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 379 (843)
..+|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 3689999999998 99999999987
No 157
>PF13918 PLDc_3: PLD-like domain
Probab=97.31 E-value=0.00094 Score=65.94 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=51.6
Q ss_pred CCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhh-hcCCeEEEEE
Q 003153 211 LPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKS-QEGVRVLLLV 289 (843)
Q Consensus 211 ~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka-~~GV~VriLv 289 (843)
.|+.....|++ .-.++|...|++|+++|||+-....|-+. ...+.+ -...|+++|++|| +|||+||+|+
T Consensus 71 SPp~~~~~gRT----~DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~-----YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRT----LDLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNR-----YWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCC----cHHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCC-----cchhHHHHHHHHHHHcCCeEEEEE
Confidence 45555555653 34789999999999999999888877432 222222 3468999999887 8999999998
No 158
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.25 E-value=0.0031 Score=75.34 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=78.9
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCh
Q 003153 540 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSA 614 (843)
Q Consensus 540 ~ayl~aI~~Ak~-----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~ 614 (843)
...++.|++|.+ .|.|+-.-+.+. ..++.++.+|.++| ++|.|++-...--+. ..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~ii~aL~~Aa~~G--k~V~v~veLkArfde-~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKD-----------------SPIIDALIEAAENG--KEVTVVVELKARFDE-EA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCC-----------------cHHHHHHHHHHHcC--CEEEEEEEehhhccc-hh
Confidence 468889999998 899976444321 25677788886666 888888874321110 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEe
Q 003153 615 SVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVH 694 (843)
Q Consensus 615 ~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 694 (843)
+. . ..+.|.++|+.+ +|++. ...+|
T Consensus 402 ni----~------------wa~~le~aG~~v--------iyg~~-------------------------------~~k~H 426 (672)
T TIGR03705 402 NI----R------------WARRLEEAGVHV--------VYGVV-------------------------------GLKTH 426 (672)
T ss_pred hH----H------------HHHHHHHcCCEE--------EEcCC-------------------------------Ceeee
Confidence 11 1 245788999875 34320 13699
Q ss_pred eeEEEEee-------eEEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 695 AKGMVVDD-------EYVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 695 sKlmIVDD-------~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
||+|+||. .|+.||+.|+|...-..- +++++...+++.
T Consensus 427 ~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i 471 (672)
T TIGR03705 427 AKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEI 471 (672)
T ss_pred eEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHH
Confidence 99999997 489999999999965433 677777555543
No 159
>PLN02964 phosphatidylserine decarboxylase
Probab=97.24 E-value=0.00021 Score=84.33 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=69.0
Q ss_pred CCcEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccCCcee--e
Q 003153 64 SDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESIS--D 139 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~--~ 139 (843)
.|+|..+-.-|.+++||.+.+++.||+|||+..|.+.... ....|.|+|.+.++ ++++|.+.+++..+...+..+ .
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 6898888777779999999999999999999999985433 34699999999998 899999999998887654422 2
Q ss_pred EEEcccCCC
Q 003153 140 WFPILGLYG 148 (843)
Q Consensus 140 w~~L~~~~~ 148 (843)
-|.+.+.++
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 377777754
No 160
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.20 E-value=0.0002 Score=85.09 Aligned_cols=88 Identities=28% Similarity=0.389 Sum_probs=75.4
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEE-EEeeeccCCCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATV-ARTRVISNCQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~-~rT~vi~~~~nP~W 91 (843)
-.++|.|++|.+|.+.|..+. +|||+.|.+++... -++..+.++.||++
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~------------------------------adpYv~l~lGk~~~~d~~~yip~tlnPVf 662 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGD------------------------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVF 662 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCC------------------------------cCceeeeeeccchhhhhhhcCcCCCCcHH
Confidence 357899999999999988776 89999999998543 37788999999999
Q ss_pred eeeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccc
Q 003153 92 NEHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAAR 130 (843)
Q Consensus 92 nE~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~ 130 (843)
++.|.+.+.-+. ..+.+.|+|.|.++ ++.||+..+.++.
T Consensus 663 gkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 663 GKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred HHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 999999887654 45899999999988 9999999998853
No 161
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.00057 Score=72.38 Aligned_cols=99 Identities=24% Similarity=0.309 Sum_probs=76.8
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
..-|.|+|+++..|..+|..+- +||||+..+.. .-..+|.+.+++.
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~ 281 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------SDPYVSQRLSPDVGKKFKKKTQQKKKTL 281 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------CCccceeecCCCcchhhcccCcchhccC
Confidence 4668899999999998887765 99999999864 3445999999999
Q ss_pred CCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEE
Q 003153 88 NPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFP 142 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~ 142 (843)
||++|++|.+.+.+.. ..+.++|||.+.-+ .+++|.+..... ..+.....|+.
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr 338 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGR 338 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc--ccchhhcCccc
Confidence 9999999999887632 46899999999885 789987665433 33444455544
No 162
>PLN02866 phospholipase D
Probab=97.03 E-value=0.002 Score=78.51 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEec
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMP 604 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP 604 (843)
.....+++++|++||++|||+.-.|.+..+-+.+. .. .++..+...|.+|.+ +||+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~----~D-~~g~RL~~lL~rKAk--rGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF----HD-HESSRLDSLLEAKAK--QGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC----CC-chHHHHHHHHHHHHH--CCCEEEEEEE
Confidence 56788999999999999999654444222211100 00 125567777777644 5699999754
No 163
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.00035 Score=73.95 Aligned_cols=93 Identities=27% Similarity=0.305 Sum_probs=74.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
...++.+|..|++|..|+..+. .|||++..+.. ....+|++..|+.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~------------------------------~d~~~~~~llpga~kl~slr~~t~~n~l 141 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGL------------------------------ADPYVKLHLLPGAGKLNSLRTKTTRNTL 141 (362)
T ss_pred hhhcceeechhcccchhhhhhh------------------------------cchHHhhhcccchhhhhhhhHHhhccCc
Confidence 4568899999999999998876 79999999875 2336888999999
Q ss_pred CCeeeeeEEEee--cCC--CceEEEEEEeCCCCC-CcceeEEEecccccccC
Q 003153 88 NPIWNEHFKIPL--AHP--VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG 134 (843)
Q Consensus 88 nP~WnE~f~~~v--~~~--~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g 134 (843)
||.|+|.-.... ... ...+.+.|.|++.+. ++++|+..+++..+.+.
T Consensus 142 N~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 142 NPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPL 193 (362)
T ss_pred CcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChh
Confidence 999998866553 222 223678899998887 79999999999888763
No 164
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.57 E-value=0.01 Score=69.98 Aligned_cols=110 Identities=19% Similarity=0.347 Sum_probs=82.1
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC------EEEEEeeecc
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG------ATVARTRVIS 84 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~------~~~~rT~vi~ 84 (843)
.-+++.|+|+++.-|..++ ...||.|.+-| .+..||+++.
T Consensus 701 IA~t~sV~VISgqFLSdrk----------------------------------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~ 746 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----------------------------------VGTYVEVDMFGLPTDTIRKEFRTRTVQ 746 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----------------------------------cCceEEEEecCCCchhhhhhhhhcccc
Confidence 5789999999998887653 45799999865 2456899887
Q ss_pred C-CCCCeeee-eEEEe-e-cCCCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEE
Q 003153 85 N-CQNPIWNE-HFKIP-L-AHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFME 160 (843)
Q Consensus 85 ~-~~nP~WnE-~f~~~-v-~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~ 160 (843)
+ +.||+|+| .|.|. | -..-..|.|.|++... .+||+--+|++.+..|.. .+-|.+..+.|... ..|.|.
T Consensus 747 ~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEgg---K~ig~RIlpvd~l~~GYr---hv~LRse~Nqpl~l-p~Lfv~ 819 (1189)
T KOG1265|consen 747 GNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEGG---KFIGQRILPVDGLNAGYR---HVCLRSESNQPLTL-PALFVY 819 (1189)
T ss_pred CCCCCcccccCCcccceecccchhheeeeeeccCC---ceeeeeccchhcccCcce---eEEecCCCCCcccc-ceeEEE
Confidence 6 99999996 46765 2 2234468999998644 799999999999999987 57787777766432 444444
Q ss_pred E
Q 003153 161 M 161 (843)
Q Consensus 161 l 161 (843)
+
T Consensus 820 i 820 (1189)
T KOG1265|consen 820 I 820 (1189)
T ss_pred E
Confidence 4
No 165
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.0039 Score=67.35 Aligned_cols=107 Identities=21% Similarity=0.371 Sum_probs=84.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|+|.|++|++|....-.. . .++|||+|++.. ..+.+|+...++.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k----------------------------~-~~apyVkVYlL~~g~c~ak~ktk~A~kT~ 318 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSK----------------------------S-LPAPYVKVYLLENGFCIAKKKTKSARKTL 318 (405)
T ss_pred cCceeEEEEecccccccCCcc----------------------------c-ccCceeEEEEcCCCceecccccccccccC
Confidence 589999999999997532111 1 389999999865 2345899888999
Q ss_pred CCeeeeeEEEeecCCCceEEEEEEeC-CCCC-CcceeEEEecccccccCC-ceeeEEEcccCC
Q 003153 88 NPIWNEHFKIPLAHPVSQIEFYVKDN-DVFG-ADLIGVATIPAARIKSGE-SISDWFPILGLY 147 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~l~~~V~d~-d~~~-~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~ 147 (843)
+|.+-++..|.-..+...|.++||-. .... +.|+|.+.|-++++..+. .+.+||+|.+..
T Consensus 319 ~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 319 DPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred chhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 99998888888887888899999853 3333 589999999999997666 788999997664
No 166
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.45 E-value=0.0007 Score=80.64 Aligned_cols=155 Identities=21% Similarity=0.168 Sum_probs=96.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
|--+++.|+.|+.|..++..+. +|||+.|...+.. ..|-++.++.||.|
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~------------------------------sdp~a~v~f~~qs-~~T~~v~~tl~ptw 253 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDE------------------------------SDPDAAVEFCGQS-KETEVVPGTLNPTW 253 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccC------------------------------CCchhhhhccccc-ceeEeecCcCCCCc
Confidence 3445566667777766665443 9999999998844 48999999999999
Q ss_pred eeeEEEee------cC----CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEE
Q 003153 92 NEHFKIPL------AH----PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFME 160 (843)
Q Consensus 92 nE~f~~~v------~~----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~ 160 (843)
++...|.- +| .-..+.|+|+|.+..+ ++++|+......-... .+.-.|+++.... . ..|.+.+.
T Consensus 254 dq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~-~---l~gd~l~a 328 (1105)
T KOG1326|consen 254 DQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGA-F---LDGDVLIA 328 (1105)
T ss_pred cceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeeccc-c---cccchhHH
Confidence 99988752 12 1123789999999988 8999998775543332 3445799985332 2 24554443
Q ss_pred EEEEeccCCCccccCCCCCCCCCCCCCcCCccccCceeEEeec
Q 003153 161 MRFLPCEENPLYRYGIAANPDSFGVNNSYFPVRNGGHVTLYQD 203 (843)
Q Consensus 161 l~~~~~~~~~~~~~gi~~~~~~~gv~~s~~p~~~gn~v~l~~d 203 (843)
....-..+.-.+...+.- .-+..+|....|......++++.=
T Consensus 329 ~eliq~~~~i~~p~~~~~-~~~~~vp~~iRp~~q~~~~evl~w 370 (1105)
T KOG1326|consen 329 AELIQIGKPIPQPPPQRE-IIFSLVPKKIRPKTQIGKAELLMW 370 (1105)
T ss_pred HHHHhhcCCCCCCCcccc-cceeccccCCCcceeeeeeehhhh
Confidence 322222221111111111 345566666677766666666543
No 167
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.37 E-value=0.0026 Score=54.73 Aligned_cols=77 Identities=12% Similarity=0.270 Sum_probs=56.0
Q ss_pred CcEEE--EEECCEEEEEeeeccCCCCCeeeeeEEEeecC---CCceEEEEEEeCCCCCCcceeEEEecccccccCCceee
Q 003153 65 DPYVT--VCLGGATVARTRVISNCQNPIWNEHFKIPLAH---PVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISD 139 (843)
Q Consensus 65 DpYv~--v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~ 139 (843)
.-|++ +.+......||.+...+.||++.|+|.|.++- +...|.|.|+. ..-..+-||.+++.+..+-. ++.++
T Consensus 22 ~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~H 99 (103)
T cd08684 22 TIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLST-QETDH 99 (103)
T ss_pred eeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCCH-HHhhh
Confidence 34554 34455566799999899999999999999865 33457888887 33346899999999988753 34567
Q ss_pred EEEc
Q 003153 140 WFPI 143 (843)
Q Consensus 140 w~~L 143 (843)
|.++
T Consensus 100 W~e~ 103 (103)
T cd08684 100 WLEI 103 (103)
T ss_pred hhcC
Confidence 7653
No 168
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.07 E-value=0.0065 Score=66.13 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCcEEEEEEC----CEEEEEeeeccCCCCCeeeeeEEEeecCC---C---------ceEEEEEEeCCCCC--CcceeEEE
Q 003153 64 SDPYVTVCLG----GATVARTRVISNCQNPIWNEHFKIPLAHP---V---------SQIEFYVKDNDVFG--ADLIGVAT 125 (843)
Q Consensus 64 ~DpYv~v~l~----~~~~~rT~vi~~~~nP~WnE~f~~~v~~~---~---------~~l~~~V~d~d~~~--~~~IG~~~ 125 (843)
.|-|+.+.+. .....+|.+|+++.+|.++|.|.+.+... . ..+.|+++.+..|- |.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4667777643 23456999999999999999999988651 1 23899999988773 89999999
Q ss_pred ecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 126 IPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 126 ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
|.+..|...-.++..++|.+. +|. .+|+|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~DG-RK~--vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDG-RKA--VGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccc-ccc--cCCeeEEEEEEe
Confidence 999999887778889999643 333 478888888754
No 169
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=96.04 E-value=0.029 Score=59.00 Aligned_cols=50 Identities=30% Similarity=0.236 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeC
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWD 291 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd 291 (843)
+...+.+.+.|++|+++|+|..|.= .-..+.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~~-----------------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPPE-----------------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-GG-----------------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCHH-----------------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 6788999999999999999998731 1258999999999999999999965
No 170
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.61 E-value=0.3 Score=46.95 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=83.8
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEE--EEEeeeccC-CCCC
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGAT--VARTRVISN-CQNP 89 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~--~~rT~vi~~-~~nP 89 (843)
=.+.|+|.+..++|..+ ...||....+... .+.|..... ...-
T Consensus 7 f~~~l~i~~l~~~p~~~----------------------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v 52 (143)
T PF10358_consen 7 FQFDLTIHELENLPSSN----------------------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKV 52 (143)
T ss_pred EEEEEEEEEeECcCCCC----------------------------------CEEEEEEEECCCCccceeeeeeeccccEE
Confidence 35788999998888511 3456666555533 345554433 5668
Q ss_pred eeeeeEEEeecC----C-----CceEEEEEEeCCCCCC-cceeEEEeccccccc--CCceeeEEEcccCCCCCCCCcceE
Q 003153 90 IWNEHFKIPLAH----P-----VSQIEFYVKDNDVFGA-DLIGVATIPAARIKS--GESISDWFPILGLYGKPPKSETAV 157 (843)
Q Consensus 90 ~WnE~f~~~v~~----~-----~~~l~~~V~d~d~~~~-~~IG~~~ipl~~l~~--g~~~~~w~~L~~~~~~~~~~~g~l 157 (843)
.|||.|.+.+.- . ...+.|.|+.....+. ..+|.+.|.|.++.. ......-++|... ......|
T Consensus 53 ~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L 128 (143)
T PF10358_consen 53 QWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATL 128 (143)
T ss_pred EEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEE
Confidence 999999988732 1 1247899988754443 599999999999987 3566667777533 1347899
Q ss_pred EEEEEEEeccCCCcc
Q 003153 158 FMEMRFLPCEENPLY 172 (843)
Q Consensus 158 ~l~l~~~~~~~~~~~ 172 (843)
+|++++.....++.|
T Consensus 129 ~isi~~~~~~~~~~~ 143 (143)
T PF10358_consen 129 SISISLSELREDPDF 143 (143)
T ss_pred EEEEEEEECccCCCC
Confidence 999999988876643
No 171
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=95.20 E-value=0.06 Score=57.28 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSAS 615 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~ 615 (843)
.+|.+...++|++|++-|=|-.--|+. .+|..-|.+|. ..++|-|||+|.. ..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa-~kR~VpVYiLLD~--------~~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAA-NKRGVPVYILLDE--------QN 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHH-HhcCCcEEEEech--------hc
Confidence 579999999999999999999999983 35555566664 2356999999984 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEee
Q 003153 616 VQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHA 695 (843)
Q Consensus 616 ~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHs 695 (843)
++.++. || .+.++.. .-...+++.+.+- ..|.-. ..+.+..-+|.
T Consensus 186 ~~~Fl~-----Mc----------~~~~v~~-~~~~nmrVRsv~G------~~y~~r-------------sg~k~~G~~~e 230 (284)
T PF07894_consen 186 LPHFLE-----MC----------EKLGVNL-QHLKNMRVRSVTG------CTYYSR-------------SGKKFKGQLKE 230 (284)
T ss_pred ChHHHH-----HH----------HHCCCCh-hhcCCeEEEEecC------CeeecC-------------CCCeeeCcccc
Confidence 332222 21 1223322 1111233322210 111110 01123446999
Q ss_pred eEEEEeeeEEEEcccCccCCCcCCCCCcceEEee
Q 003153 696 KGMVVDDEYVILGSANINQRSLAGGRDTEIAMGA 729 (843)
Q Consensus 696 KlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i 729 (843)
|+||||.+.|+.||--+..-|-..+ .-+...+
T Consensus 231 KF~lvD~~~V~~GSYSFtWs~~~~~--r~~~~~~ 262 (284)
T PF07894_consen 231 KFMLVDGDKVISGSYSFTWSSSRVH--RNLVTVL 262 (284)
T ss_pred eeEEEecccccccccceeecccccc--cceeEEE
Confidence 9999999999999999998887643 4455554
No 172
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.99 E-value=0.03 Score=64.01 Aligned_cols=113 Identities=26% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCcEEEEEEC--C---EEEEEeeeccCCCCCeeeeeEEEeecC-----CCceEEEEEEeCCCCC-CcceeEEEecccccc
Q 003153 64 SDPYVTVCLG--G---ATVARTRVISNCQNPIWNEHFKIPLAH-----PVSQIEFYVKDNDVFG-ADLIGVATIPAARIK 132 (843)
Q Consensus 64 ~DpYv~v~l~--~---~~~~rT~vi~~~~nP~WnE~f~~~v~~-----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~ 132 (843)
+|||..+.-- . ..+.+|.+++++.+|.|. .|.+.+.. ....+.+.++|.+..+ .++||.+..++.++.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 8999988743 1 356799999999999997 56666532 3456899999999988 599999999998886
Q ss_pred cCCceeeEEEcccCCCC----CCCCcceEEEEEEEEeccCCCccccCCCCCC
Q 003153 133 SGESISDWFPILGLYGK----PPKSETAVFMEMRFLPCEENPLYRYGIAANP 180 (843)
Q Consensus 133 ~g~~~~~w~~L~~~~~~----~~~~~g~l~l~l~~~~~~~~~~~~~gi~~~~ 180 (843)
...... -+++...+++ ..+..|.+.+. .| .......|...+.++.
T Consensus 236 ~~~~~~-~~~~~~~~~~~~~k~~k~~g~~~l~-~~-~~~~~~sfld~i~gg~ 284 (529)
T KOG1327|consen 236 EPGSPN-QIMLINPKKKAKKKSYKNSGQLILD-RF-TSLDQYSFLDYIAGGE 284 (529)
T ss_pred ccCCcc-cccccChhhhhhhhcccccceEEeh-he-eehhhhhHHHHHccCc
Confidence 411112 2333333221 12234544432 22 2334456666666644
No 173
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.54 E-value=0.4 Score=52.90 Aligned_cols=120 Identities=16% Similarity=0.261 Sum_probs=88.5
Q ss_pred EEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeeeee
Q 003153 15 LDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWNEH 94 (843)
Q Consensus 15 L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~ 94 (843)
+.|.|++|++.+... .-.-.+...+++. ...|..+..+..|.||..
T Consensus 2 ivl~i~egr~F~~~~---------------------------------~~~~vv~a~~ng~-~l~TDpv~~~~~p~f~te 47 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---------------------------------RHPIVVEAKFNGE-SLETDPVPHTESPQFNTE 47 (340)
T ss_pred EEEEEecccCCCCCC---------------------------------CccEEEEEEeCCc-eeeecCCCCCCCceeecc
Confidence 468899999988541 1345777788884 448888888999999999
Q ss_pred EEEeecC--------CCceEEEEEEeCCCC-C-CcceeEEEeccccc---ccC--CceeeEEEcccCCCCCCCCcceEEE
Q 003153 95 FKIPLAH--------PVSQIEFYVKDNDVF-G-ADLIGVATIPAARI---KSG--ESISDWFPILGLYGKPPKSETAVFM 159 (843)
Q Consensus 95 f~~~v~~--------~~~~l~~~V~d~d~~-~-~~~IG~~~ipl~~l---~~g--~~~~~w~~L~~~~~~~~~~~g~l~l 159 (843)
....+.. ....|+++++..|.. + .+.||-+-+++... ..+ .....||+|++...+-.+...+|.+
T Consensus 48 L~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l 127 (340)
T PF12416_consen 48 LAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLL 127 (340)
T ss_pred eeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEE
Confidence 9998854 233588999888733 3 68999999999888 555 4456899999884443345677877
Q ss_pred EEEEEeccC
Q 003153 160 EMRFLPCEE 168 (843)
Q Consensus 160 ~l~~~~~~~ 168 (843)
.+....-..
T Consensus 128 ~l~ie~~~~ 136 (340)
T PF12416_consen 128 SLSIEDDSK 136 (340)
T ss_pred EEEEecccc
Confidence 777655443
No 174
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=94.42 E-value=3.2 Score=48.71 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHhccc-----eEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccc
Q 003153 224 HERCWEDICHAILEAHH-----LVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSK 298 (843)
Q Consensus 224 ~~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~ 298 (843)
|-+.|+.+.+.|++|-. .|-+ .|-|.+ ...+|.++|..||+.|-+|-+|| .-. ..
T Consensus 350 PYeSF~~Vv~fl~qAA~DP~VLAIKq---------TLYRt~-------~dSpIV~ALi~AA~nGKqVtvlV-ELk---AR 409 (696)
T COG0855 350 PYESFEPVVEFLRQAAADPDVLAIKQ---------TLYRTS-------KDSPIVRALIDAAENGKQVTVLV-ELK---AR 409 (696)
T ss_pred chhhhHHHHHHHHHhhcCCCeEEEEE---------EEEecC-------CCCHHHHHHHHHHHcCCeEEEEE-EEh---hh
Confidence 45678899999998853 2333 344533 34799999999999999999998 211 11
Q ss_pred cccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccC
Q 003153 299 FFINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQ 360 (843)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~ 360 (843)
+. .-.+-.+.+.|+.+||+|++-- .-+--|-|+.+|=.+
T Consensus 410 FD-------EE~NI~WAk~LE~AGvhVvyG~----------------~glKtHAKm~lVvRr 448 (696)
T COG0855 410 FD-------EEANIHWAKRLERAGVHVVYGV----------------VGLKTHAKMLLVVRR 448 (696)
T ss_pred cC-------hhhhhHHHHHHHhCCcEEEecc----------------cceeeeeeEEEEEEe
Confidence 10 0001135677899999998521 112479999988544
No 175
>PLN03008 Phospholipase D delta
Probab=94.39 E-value=0.066 Score=64.57 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=50.0
Q ss_pred ceeEEeecccCC-CCCCCc-------eeeccCcccch-hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeC-CCCCCCC
Q 003153 196 GHVTLYQDAHVP-ESMLPE-------IELEKGIQYKH-ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVRE-PTKPLPS 265 (843)
Q Consensus 196 n~v~l~~d~~~~-~~~~p~-------~~l~~g~~y~~-~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~-~~~~~~~ 265 (843)
..|+++-+-... ....|. ..|+.|+...- ..+..+.+++|++|||+|||+.=-|-...+.... .+.....
T Consensus 528 w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n 607 (868)
T PLN03008 528 WHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADN 607 (868)
T ss_pred cccceeeecCchhhcCCCCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccccccccccc
Confidence 357777664332 223343 23555665544 3556889999999999999984333221111100 0000000
Q ss_pred CCcchHHHHHHHhh--hcCCeEEEEE
Q 003153 266 GGNLSLGDLLKYKS--QEGVRVLLLV 289 (843)
Q Consensus 266 ~~~~~l~~lL~~ka--~~GV~VriLv 289 (843)
-.+..|...|.+|. .++-+|+|++
T Consensus 608 ~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 608 LIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred chhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 01234556665554 4588899887
No 176
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=94.35 E-value=4.5 Score=44.37 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhcc-----ceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccc
Q 003153 226 RCWEDICHAILEAH-----HLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFF 300 (843)
Q Consensus 226 ~~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~ 300 (843)
+.|+.+.+.|++|- .+|.|+-|.+. ....+.++|.+||+.|-+|.++| .-... +.
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a----------------~~S~iv~aLi~AA~nGK~Vtv~v-ELkAR---FD 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVA----------------SNSPIVNALIEAAENGKQVTVLV-ELKAR---FD 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-----------------TT-HHHHHHHHHHHTT-EEEEEE-STTSS---ST
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecC----------------CCCHHHHHHHHHHHcCCEEEEEE-EEecc---cc
Confidence 45778888898874 57777766543 23699999999999999999998 32211 10
Q ss_pred cccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCc
Q 003153 301 INTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDG 380 (843)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~ 380 (843)
+.. +-.+.+.|+.+||+|.+-- ++ +--|.|+.+|=.+..+ +-+..+++|-=|...
T Consensus 78 -Ee~------Ni~Wa~~Le~aGv~ViyG~--~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe- 132 (352)
T PF13090_consen 78 -EEN------NIHWAKRLEEAGVHVIYGV--PG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNE- 132 (352)
T ss_dssp -TCC------CCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SST-
T ss_pred -HHH------HhHHHhhHHhcCeEEEcCC--CC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc-
Confidence 000 1123566889999998531 11 2369999998554212 223366666555333
Q ss_pred ccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh-HHHHHHHHHHH
Q 003153 381 RYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP-AAYDVLTNFEQ 438 (843)
Q Consensus 381 R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~ 438 (843)
.+. .-+-|+++.-..| .+.|+...|..
T Consensus 133 ------------------------------~TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 133 ------------------------------KTA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ------------------------------THC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ------------------------------cch-hheecceeecCCHHHHHHHHHHHHH
Confidence 011 2356988888777 57899988854
No 177
>PLN02352 phospholipase D epsilon
Probab=94.17 E-value=0.079 Score=63.60 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCC-CCCCCCCCcchHHHHHHHhhh--cCCeEEEEE
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREP-TKPLPSGGNLSLGDLLKYKSQ--EGVRVLLLV 289 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~-~~~~~~~~~~~l~~lL~~ka~--~GV~VriLv 289 (843)
.+..++.++||++|||+|||+.=-|-...+...+. ..+...-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 57889999999999999999843332111111000 000000012366777777655 578888887
No 178
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.13 E-value=0.35 Score=42.29 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCcEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEc
Q 003153 64 SDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPI 143 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L 143 (843)
++..+++.+++..+++|.-.. ..+..|++.|.|.+.. ..+|+|.|+-.|- ..+.|...+-+++...+ .-.++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 688999999999999998754 4688999999999975 5689999987654 46778888888774322 12344
Q ss_pred ccCCCCCCCCcceEEEEEEE
Q 003153 144 LGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 144 ~~~~~~~~~~~g~l~l~l~~ 163 (843)
.+.|.+...+.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 457888888887
No 179
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.76 Score=45.72 Aligned_cols=140 Identities=23% Similarity=0.288 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
+.....+.+.|+.|.+...++.+.-.. +-.-+.+.|..+.++||++|||- ++.-. +
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~s---------------G~sll~~~L~d~~~Kgvkgkilt-s~Yln-----f--- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITES---------------GLSLLFDLLLDLVNKGVKGKILT-SDYLN-----F--- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCc---------------cHHHHHHHHHHHhcCCceEEEec-ccccC-----c---
Confidence 567889999999999988888765321 23578889999999999999996 43211 0
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
|+....++.+.-.+|+|+.+.- + ...+|-|-.+.-.. ....|++|+.|++++-...
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~~-~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVSTI-G--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEec-C--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 2233445555556688775421 1 12478887775432 1248999999999944311
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCcee-eeeeeeChHHHHHHHHHHHHHh
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHD-LHCKIEGPAAYDVLTNFEQRWR 441 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhD-v~~~v~Gpaa~dl~~~F~~rW~ 441 (843)
. .-|.- +...-.|..|..+...|+..|.
T Consensus 150 -n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 -N----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred -C----------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 11211 2333467789999999999987
No 180
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=93.70 E-value=0.23 Score=59.89 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred cCccceEEeccCCCCCCcceEEEeccccCCCcccC
Q 003153 349 THHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYD 383 (843)
Q Consensus 349 shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~D 383 (843)
-=|.|++|||++ .+.||+.||.+.-.+
T Consensus 701 YVHsK~mIvDD~--------~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 701 YVHSKLMIVDDE--------YVIIGSANINQRSML 727 (887)
T ss_pred EEeeeeEEecCC--------EEEEeecccchhhcc
Confidence 459999999999 999999999994443
No 181
>PLN02270 phospholipase D alpha
Probab=91.69 E-value=0.32 Score=58.83 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.5
Q ss_pred cCccceEEeccCCCCCCcceEEEeccccCCCcccC
Q 003153 349 THHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYD 383 (843)
Q Consensus 349 shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~D 383 (843)
--|.|++|||++ .+.||+.|+...-++
T Consensus 657 ~vH~K~~ivDd~--------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 657 YVHTKMMIVDDE--------YIIIGSANINQRSMD 683 (808)
T ss_pred EEeeeEEEEcCC--------EEEEecccccccccc
Confidence 469999999998 999999999985454
No 182
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=90.90 E-value=2.2 Score=41.64 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=71.1
Q ss_pred CcEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCCC--------------ceEEEEEEeCCCCC-CcceeEEEeccc
Q 003153 65 DPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPV--------------SQIEFYVKDNDVFG-ADLIGVATIPAA 129 (843)
Q Consensus 65 DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~--------------~~l~~~V~d~d~~~-~~~IG~~~ipl~ 129 (843)
-.++.+.+.++ .++|+.+..+.+|.++|.|-|++.... ..|.+.|.--|..+ ..++|.-.+.-.
T Consensus 35 ~~~l~l~f~~Q-RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR 113 (156)
T PF15627_consen 35 TFTLHLHFRGQ-RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWR 113 (156)
T ss_pred EEEEEEEecCc-eEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHH
Confidence 34555556664 459999999999999999999986532 23666676666665 589999888887
Q ss_pred ccccCCce--eeEEEcccCCCCCCCCcceEEEEEEEEeccC
Q 003153 130 RIKSGESI--SDWFPILGLYGKPPKSETAVFMEMRFLPCEE 168 (843)
Q Consensus 130 ~l~~g~~~--~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~~ 168 (843)
.+...... ..-+.|.+......-+.|-|.+++...|...
T Consensus 114 ~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 114 KVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred HHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 77654333 3344555554432235789999998887543
No 183
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=90.49 E-value=0.93 Score=44.57 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=55.9
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEE--CCEEE---EEeeeccC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCL--GGATV---ARTRVISN 85 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l--~~~~~---~rT~vi~~ 85 (843)
++..+.|+|+++.+++-.+ .+|-||++.+ ++... ..|..+..
T Consensus 6 ~~~~~~v~i~~~~~~~~~~---------------------------------~~~l~V~v~l~~g~~~L~~pv~T~~v~~ 52 (158)
T cd08398 6 INSNLRIKILCATYVNVND---------------------------------IDKIYVRTGIYHGGEPLCDNVNTQRVPC 52 (158)
T ss_pred CCCCeEEEEEeeccCCCCC---------------------------------cCeEEEEEEEEECCEEccCeeEecccCC
Confidence 3567899999999887421 1678888865 33322 14444443
Q ss_pred CCCCeeeeeEEEeecC----CCceEEEEEEeCCCCC-----CcceeEEEecccc
Q 003153 86 CQNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG-----ADLIGVATIPAAR 130 (843)
Q Consensus 86 ~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-----~~~IG~~~ipl~~ 130 (843)
.++.|||...|++.- ..+.|.|+||+...-+ ...||.+.+++-+
T Consensus 53 -~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 53 -SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred -CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 689999999888743 2456999999854311 2457777666543
No 184
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=88.54 E-value=1 Score=47.91 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=76.7
Q ss_pred eEEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCC
Q 003153 8 IVYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQ 87 (843)
Q Consensus 8 ~~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~ 87 (843)
+.-+.|.|.+.++++++|.-... .|.-+.+.||++..+..-.+||++-....
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~----------------------------~kglt~~~ycVle~drqh~aRt~vrs~~~ 97 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQ----------------------------QKGLTVCFYCVLEPDRQHPARTRVRSSGP 97 (442)
T ss_pred eecccceEEEEEecccccccChh----------------------------ccCceeeeeeeeeecccCccccccccCCC
Confidence 34568999999999999963211 12334789999999987777887766666
Q ss_pred CCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 88 NPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
-=.|.|.|.+.+-. ...+.+-|+.++... ..+.-..-+.+..+.. +.-++-+.|. .++.|++.+++.+.+
T Consensus 98 ~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 98 GFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR-QSPDRVVALY------LEPRGQPPLRLPLAD 168 (442)
T ss_pred Cccchhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhhh-cCCcceeeee------cccCCCCceecccCC
Confidence 66899999998764 445677888777654 3333222333333322 2223334442 134677777776544
No 185
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=86.80 E-value=3 Score=41.52 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCcEEEEEECCEEEEEeeeccC--CCCCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccc
Q 003153 64 SDPYVTVCLGGATVARTRVISN--CQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIK 132 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~--~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~ 132 (843)
..-|++|.+.+..+.+|+...- ...=.+||.|.+.+..--..|.+.||.....++.+|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5789999999999998887654 33356789999999886778999999988877999999999985443
No 186
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=86.39 E-value=2 Score=42.28 Aligned_cols=69 Identities=25% Similarity=0.287 Sum_probs=48.9
Q ss_pred CCCCcEEEEEE--CCEEE---EEeeeccCCCCCeeeeeEEEeecC----CCceEEEEEEeCCCCC-CcceeEEEecccc
Q 003153 62 ITSDPYVTVCL--GGATV---ARTRVISNCQNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG-ADLIGVATIPAAR 130 (843)
Q Consensus 62 ~~~DpYv~v~l--~~~~~---~rT~vi~~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~ 130 (843)
..+|.||++.+ ++... -+|..+.-+..+.|||...|++.- ..+.|.|+||+.+..+ ...||.+.+++-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34789999876 33222 266666667789999999998754 2456999999976554 5688888877644
No 187
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=85.68 E-value=3.6 Score=41.16 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=47.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEE--CCEEE---EEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCL--GGATV---ARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l--~~~~~---~rT~vi~~~ 86 (843)
+..+.|+|+.+.+|...+. ..+-||.+.+ ++... ..|..+.-+
T Consensus 7 ~~~f~i~i~~~~~~~~~~~--------------------------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~ 54 (173)
T cd08693 7 EEKFSITLHKISNLNAAER--------------------------------TMKVGVQAGLFHGGESLCKTVKTSEVSGK 54 (173)
T ss_pred CCCEEEEEEEeccCccCCC--------------------------------CceEEEEEEEEECCEEccCceEccccCCC
Confidence 5678999999999874110 1567777654 44322 256555556
Q ss_pred CCCeeeeeEEEeecC----CCceEEEEEEeCC
Q 003153 87 QNPIWNEHFKIPLAH----PVSQIEFYVKDND 114 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~----~~~~l~~~V~d~d 114 (843)
.++.|||.+.|++.- ..+.|.|+||+..
T Consensus 55 ~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 55 NDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 789999999987643 2346999999854
No 188
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.24 E-value=0.94 Score=53.39 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=67.0
Q ss_pred CCcEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEeccccccc-CCceeeEE
Q 003153 64 SDPYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKS-GESISDWF 141 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~-g~~~~~w~ 141 (843)
.+||+.|.+.-.....+.+.+.+..|.|+|+|.+.+. ....+.+.|+.+...+ +.....+++-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998766667777777999999999999954 4667788888776544 4555555555555543 22345688
Q ss_pred EcccCCCCCCCCcceEEEEEEEEeccC
Q 003153 142 PILGLYGKPPKSETAVFMEMRFLPCEE 168 (843)
Q Consensus 142 ~L~~~~~~~~~~~g~l~l~l~~~~~~~ 168 (843)
.+ +..|++...+.++....
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 75 23577777777766554
No 189
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=84.15 E-value=2.9 Score=40.89 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=44.5
Q ss_pred CCcEEEEEE--CCE---EEEEeeeccCCCCCeeeeeEEEeecC----CCceEEEEEEeCCCCC---CcceeEEEecccc
Q 003153 64 SDPYVTVCL--GGA---TVARTRVISNCQNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG---ADLIGVATIPAAR 130 (843)
Q Consensus 64 ~DpYv~v~l--~~~---~~~rT~vi~~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~---~~~IG~~~ipl~~ 130 (843)
.+-||++.+ ++. .+..|.....+.++.|||...|++.- ..+.|.|+||+.+..+ ...||.+.+++-+
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 567777754 332 22244444444789999999988643 2446999999865443 4788988887754
No 190
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=80.99 E-value=3.7 Score=45.09 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCcc
Q 003153 582 ELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNRE 661 (843)
Q Consensus 582 ~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~ 661 (843)
.++.++.+|.++|+ +|.+++-...--+ +..++ .| .+.|.++|+.+ +|++.
T Consensus 51 ~iv~aLi~AA~nGK--~Vtv~vELkARFD-Ee~Ni----~W------------a~~Le~aGv~V--------iyG~~--- 100 (352)
T PF13090_consen 51 PIVNALIEAAENGK--QVTVLVELKARFD-EENNI----HW------------AKRLEEAGVHV--------IYGVP--- 100 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSST-TCCCC----CC------------CHHHHHCT-EE--------EE--T---
T ss_pred HHHHHHHHHHHcCC--EEEEEEEEecccc-HHHHh----HH------------HhhHHhcCeEE--------EcCCC---
Confidence 67788888888774 6777776543111 11111 23 35688999875 45430
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEe-------eeEEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 662 EVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVD-------DEYVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVD-------D~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
..-||||+++|= -+|+.+|+.|.|...-..= |.+++...++++
T Consensus 101 ----------------------------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i 150 (352)
T PF13090_consen 101 ----------------------------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEI 150 (352)
T ss_dssp ----------------------------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHH
T ss_pred ----------------------------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHH
Confidence 235999999986 3699999999999876532 667777655543
No 191
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=77.65 E-value=7.6 Score=39.13 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=32.1
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecCC---CceEEEEEEeCCCCC----CcceeEEEecccc
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG----ADLIGVATIPAAR 130 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~----~~~IG~~~ipl~~ 130 (843)
..+.|.|.-++.+|.|+|+|.+.++.. ...|.|++++...-. ...+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 445788888889999999999999753 345899999864432 1578877777765
No 192
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=75.69 E-value=8.3 Score=38.43 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=55.0
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEE--CCEEE---EEeeecc-
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCL--GGATV---ARTRVIS- 84 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l--~~~~~---~rT~vi~- 84 (843)
....+.|+|..+.+++...... ..|-|+++.+ ++... ..|+...
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~------------------------------~~~~~v~~~l~~g~~~L~~~~~T~~~~~ 55 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQS------------------------------FEDFYLSCSLYHGGRLLCSPVTTKPVKI 55 (171)
T ss_pred ccccEEEEEEEeecCChHHhhc------------------------------cccEEEEEEEEECCEECcCceecccccc
Confidence 4567889999999988543211 1678888865 34322 1443221
Q ss_pred ---CCCCCeeeeeEEEeecC----CCceEEEEEEeCCCCC----------CcceeEEEeccc
Q 003153 85 ---NCQNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG----------ADLIGVATIPAA 129 (843)
Q Consensus 85 ---~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~----------~~~IG~~~ipl~ 129 (843)
-...+.|||...|++.- ..+.|.|++|+....+ ...||.+.+++-
T Consensus 56 ~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 56 TKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred ccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 13467899999888743 2346999999854432 356666666553
No 193
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=75.45 E-value=18 Score=34.77 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=43.9
Q ss_pred CcEEEEEE--CCE----EEEEeeeccCC-CCCeeeeeEEEeecC----CCceEEEEEEeCCCCC-C----cceeEEEecc
Q 003153 65 DPYVTVCL--GGA----TVARTRVISNC-QNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG-A----DLIGVATIPA 128 (843)
Q Consensus 65 DpYv~v~l--~~~----~~~rT~vi~~~-~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-~----~~IG~~~ipl 128 (843)
+.||.+.+ ++. .+..|....-+ .++.|||...|++.- ..+.|.|+|+..+... . ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 34555554 342 34466666666 899999998888642 3456999999876554 3 5888888887
Q ss_pred ccc
Q 003153 129 ARI 131 (843)
Q Consensus 129 ~~l 131 (843)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 554
No 194
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=75.22 E-value=2.9 Score=45.37 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=27.8
Q ss_pred EEeeeEEEE-e---eeEEEEcccCccC-CCcCCCCCcceEEeeecC
Q 003153 692 YVHAKGMVV-D---DEYVILGSANINQ-RSLAGGRDTEIAMGAYQP 732 (843)
Q Consensus 692 yvHsKlmIV-D---D~~~iiGSANin~-RSm~~~rDsEi~v~i~d~ 732 (843)
-+|+|+.+. . +..++|||||+.. -... .+=.| +++..|+
T Consensus 80 ~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 80 PYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 489999999 2 4689999999988 3332 23379 5555555
No 195
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=73.53 E-value=15 Score=33.55 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=50.1
Q ss_pred EEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCC--------CceEEEEEEeCCCCCCcceeEEEeccccccc--CCc
Q 003153 67 YVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHP--------VSQIEFYVKDNDVFGADLIGVATIPAARIKS--GES 136 (843)
Q Consensus 67 Yv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~--------~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~--g~~ 136 (843)
||++++-.-....|.++. +.+|.+|-+-++.|.-. ...+.+++...-......||.+.|++..+.. +..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 455655554444666665 88999998877777542 2347888877553235899999999999985 445
Q ss_pred eeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 137 ISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 137 ~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
+.....|.+.+++. -|.|...++.
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEe
Confidence 77788888777763 6777766653
No 196
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=72.83 E-value=24 Score=35.36 Aligned_cols=85 Identities=8% Similarity=0.096 Sum_probs=47.2
Q ss_pred EeeeccCCCCCeeeeeEEEeecC----CCceEEEEEEeCCCCC--CcceeEEEecccccccCCceeeEE--EcccCCCCC
Q 003153 79 RTRVISNCQNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG--ADLIGVATIPAARIKSGESISDWF--PILGLYGKP 150 (843)
Q Consensus 79 rT~vi~~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~--~~~IG~~~ipl~~l~~g~~~~~w~--~L~~~~~~~ 150 (843)
+|.....+.++.|||...|++.- ..+.|.|+||+...-+ ....|.. +.+.-......-+|. .|.|..+.
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~- 125 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFL- 125 (178)
T ss_pred eeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCc-
Confidence 66666667889999998888643 2456999999853221 1222221 111111111222454 34555443
Q ss_pred CCCcceEEEEEEEEecc
Q 003153 151 PKSETAVFMEMRFLPCE 167 (843)
Q Consensus 151 ~~~~g~l~l~l~~~~~~ 167 (843)
-..|...+.+.-.|..
T Consensus 126 -Lr~G~~~L~~W~~~~~ 141 (178)
T cd08399 126 -LRTGEYVLHMWQISGK 141 (178)
T ss_pred -eecCCEEEEEecCCCc
Confidence 2468888888765533
No 197
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=69.28 E-value=10 Score=38.28 Aligned_cols=53 Identities=25% Similarity=0.462 Sum_probs=38.0
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecC---CCceEEEEEEeCCCCC---CcceeEEEecc
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAH---PVSQIEFYVKDNDVFG---ADLIGVATIPA 128 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~~---~~~IG~~~ipl 128 (843)
..++|.|...+.+|.|+|++.+.++. ....|.|+++...... ...+|-+.+||
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 45688888889999999999999864 3456889887643321 24566665555
No 198
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=64.39 E-value=50 Score=33.26 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecC
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPM 605 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~ 605 (843)
.-|+..++..|+.|+.|..+- -|+..+. -..+...+..+ .++|++++|+...
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~sG--------------~sll~~~L~d~--~~Kgvkgkilts~ 89 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITESG--------------LSLLFDLLLDL--VNKGVKGKILTSD 89 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCcc--------------HHHHHHHHHHH--hcCCceEEEeccc
Confidence 468899999999999998877 3554321 01222233333 5678999999874
No 199
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=63.80 E-value=18 Score=36.73 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=38.8
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecC---CCceEEEEEEeCCCC--C---CcceeEEEecc
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAH---PVSQIEFYVKDNDVF--G---ADLIGVATIPA 128 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~---~~~~l~~~V~d~d~~--~---~~~IG~~~ipl 128 (843)
..++|-|.-...+|.|+|++.+.++- ....|.|+++..... + ...+|-+.+||
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 55688888889999999999999864 445699999764322 1 24566666666
No 200
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=62.69 E-value=32 Score=40.86 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCcc
Q 003153 582 ELALKIASKIRAKERFAVYVVMPMWPEGAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNRE 661 (843)
Q Consensus 582 ~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~ 661 (843)
.|+.++..|.++|+ +|.+|+-...- -.+..+ ++| +++|.++|+.+ +|++
T Consensus 385 pIV~ALi~AA~nGK--qVtvlVELkAR-FDEE~N----I~W------------Ak~LE~AGvhV--------vyG~---- 433 (696)
T COG0855 385 PIVRALIDAAENGK--QVTVLVELKAR-FDEEAN----IHW------------AKRLERAGVHV--------VYGV---- 433 (696)
T ss_pred HHHHHHHHHHHcCC--eEEEEEEEhhh-cChhhh----hHH------------HHHHHhCCcEE--------Eecc----
Confidence 57788888887775 56666654221 001111 233 56788999975 4543
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEe-------eeEEEEcccCccCCCcCCCCCcceEEeeecC
Q 003153 662 EVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVD-------DEYVILGSANINQRSLAGGRDTEIAMGAYQP 732 (843)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVD-------D~~~iiGSANin~RSm~~~rDsEi~v~i~d~ 732 (843)
. ..-+|+|+++|= -+|+-+|+.|.|..+-..= |.+++..-|+
T Consensus 434 -------~--------------------glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~ 482 (696)
T COG0855 434 -------V--------------------GLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADP 482 (696)
T ss_pred -------c--------------------ceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCH
Confidence 0 125999999884 2599999999999876432 4455544444
No 201
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=62.34 E-value=3.5 Score=47.70 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=27.0
Q ss_pred eEEEeeeEEEEee-------eEEEEcccCccCCCcCCC----------CCcceEEee
Q 003153 690 MIYVHAKGMVVDD-------EYVILGSANINQRSLAGG----------RDTEIAMGA 729 (843)
Q Consensus 690 ~iyvHsKlmIVDD-------~~~iiGSANin~RSm~~~----------rDsEi~v~i 729 (843)
.+.-|+|+++... .|+++|||||..-.+. . +..|++|++
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEE
Confidence 4568999999987 5999999999875552 3 678999998
No 202
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=60.52 E-value=27 Score=36.60 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecC
Q 003153 535 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPM 605 (843)
Q Consensus 535 e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~ 605 (843)
..+|.+...++|++|++.|||....=. -.++...|.+|.++| +.|++++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~~rG--V~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAVDRG--VKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHHHTT---EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 367889999999999999999864211 235666677775544 999999884
No 203
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=60.34 E-value=10 Score=42.09 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCC
Q 003153 537 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMW 606 (843)
Q Consensus 537 sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~ 606 (843)
..++.+.+.|.+||+.|+|.+-|.-. ...+++.-|..++..++.++|-|++.-.
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~----------------~E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGK----------------LERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccch----------------hHHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 46778999999999999999998852 1568999999999999999999999854
No 204
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=58.50 E-value=12 Score=42.34 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=37.0
Q ss_pred ceeEEEecccc-cccCCceeeEEEcccCCCCCCCCcceEEEEEEEEeccCCC
Q 003153 120 LIGVATIPAAR-IKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPCEENP 170 (843)
Q Consensus 120 ~IG~~~ipl~~-l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~~~~ 170 (843)
++|.+.||++. +..|...+.||++.+...++ ...|.+ ++++|....-.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceecc
Confidence 48999999999 55678899999998876554 345666 788877665444
No 205
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=58.49 E-value=13 Score=43.08 Aligned_cols=84 Identities=29% Similarity=0.425 Sum_probs=57.7
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecCC-CceEEEEEEeCCCC----C-CcceeEEEecccccccCCceeeEEEcccCCCC
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAHP-VSQIEFYVKDNDVF----G-ADLIGVATIPAARIKSGESISDWFPILGLYGK 149 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~~-~~~l~~~V~d~d~~----~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~ 149 (843)
.++||.++.++.||.|-+.|.+..... ...|.|.++|.+.. . .+|+|++...+.++.+...... ++.-+.++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~--~l~~~~~~ 118 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG--PLLLKPGK 118 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh--hhhcccCc
Confidence 567999999999999999988876543 44589999987644 2 5899999999998876433222 22223323
Q ss_pred CCCCcceEEEEEE
Q 003153 150 PPKSETAVFMEMR 162 (843)
Q Consensus 150 ~~~~~g~l~l~l~ 162 (843)
+ ...|.|.+++.
T Consensus 119 ~-~~~g~iti~ae 130 (529)
T KOG1327|consen 119 N-AGSGTITISAE 130 (529)
T ss_pred c-CCcccEEEEee
Confidence 2 33566655554
No 206
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=57.77 E-value=26 Score=35.06 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=34.8
Q ss_pred eeeccCCCCCeeeeeEEEeecCC---CceEEEEEEeCCCCC------CcceeEEEecccc
Q 003153 80 TRVISNCQNPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG------ADLIGVATIPAAR 130 (843)
Q Consensus 80 T~vi~~~~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~------~~~IG~~~ipl~~ 130 (843)
|.++-...+|.|+|+|.+.++.. ...|.|++++..... ...+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444449999999999998643 445899998865322 3567776666643
No 207
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=55.79 E-value=68 Score=28.79 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCcEEEEEE--CCEEE---EEeeeccCCCCCeeeeeEEEeecC----CCceEEEEEEeC
Q 003153 64 SDPYVTVCL--GGATV---ARTRVISNCQNPIWNEHFKIPLAH----PVSQIEFYVKDN 113 (843)
Q Consensus 64 ~DpYv~v~l--~~~~~---~rT~vi~~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~ 113 (843)
++-||++.+ ++... -.|..+.-+..+.|||...|++.- ....|.|+||+.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478888865 33322 256555556679999998887643 234689999984
No 208
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=53.56 E-value=32 Score=34.56 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=31.2
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecCC---CceEEEEEEeCC
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAHP---VSQIEFYVKDND 114 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~~---~~~l~~~V~d~d 114 (843)
..+.|.|.-.+.+|.|+|++.+.++-. ...|.|+.++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 556888888899999999999998653 345889888744
No 209
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=47.30 E-value=1.8e+02 Score=32.01 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=61.5
Q ss_pred CCcEEEEEECCEEEEEeeeccCCCCC--eeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEeccccc-c-cCCceee
Q 003153 64 SDPYVTVCLGGATVARTRVISNCQNP--IWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARI-K-SGESISD 139 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~~~nP--~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l-~-~g~~~~~ 139 (843)
...|+.+..+.. ..+|..+.-+..- .-.|+..+.+..-...|.+.|+-....+..-||.+.+.+++= . ..-+...
T Consensus 74 khiyIef~~Gr~-d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKY-DFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCce-EEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 456888888874 4466555443333 334566666666566799999998888889999999988652 2 3445678
Q ss_pred EEEcccCCCCCCCCcceEEEEE
Q 003153 140 WFPILGLYGKPPKSETAVFMEM 161 (843)
Q Consensus 140 w~~L~~~~~~~~~~~g~l~l~l 161 (843)
||-+. ..|+. .++|.+++
T Consensus 153 Wy~c~-kDGq~---~cRIqLSF 170 (508)
T PTZ00447 153 WFVCF-KDGQE---ICKVQMSF 170 (508)
T ss_pred eEEEe-cCCce---eeeEEEEe
Confidence 99994 44443 35555543
No 210
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.74 E-value=52 Score=33.24 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=31.6
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecC---CCceEEEEEEeCC
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAH---PVSQIEFYVKDND 114 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~---~~~~l~~~V~d~d 114 (843)
..+.|.|.-.+.+|.|+|++.+.++- ....|.|+.++..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 56688888889999999999999864 3445889998854
No 211
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=41.62 E-value=13 Score=45.19 Aligned_cols=57 Identities=28% Similarity=0.420 Sum_probs=44.9
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccC
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISN 85 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~ 85 (843)
++.|.+.+.+.+|..|... ...||+..+.. ...++|+++.+
T Consensus 756 l~ygflh~~vhsat~lkqs-----------------------------------~~lY~Td~v~e~~~~~s~~st~~iad 800 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----------------------------------RNLYCTDEVDEFGYFVSKASTRVIAD 800 (1112)
T ss_pred ccccceeeeeccccccccc-----------------------------------cceeeehhhhhhccccccccceeeec
Confidence 4668888888888887642 45677776542 45679999999
Q ss_pred CCCCeeeeeEEEeecC
Q 003153 86 CQNPIWNEHFKIPLAH 101 (843)
Q Consensus 86 ~~nP~WnE~f~~~v~~ 101 (843)
+..|.||++|++++-.
T Consensus 801 T~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 801 TAEPQWNPEKHVPVIE 816 (1112)
T ss_pred ccCCCCChhcccchhh
Confidence 9999999999999854
No 212
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=35.97 E-value=1.2e+02 Score=28.24 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEee-CCCCCCCCCCcchHHHHHHHhhhcCCeEEEE
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVR-EPTKPLPSGGNLSLGDLLKYKSQEGVRVLLL 288 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r-~~~~~~~~~~~~~l~~lL~~ka~~GV~VriL 288 (843)
+++|..+.-|+..|.---..+-|+.....+|++ ............+|.++.+++.+.||++++-
T Consensus 17 ~r~ya~f~~A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvC 81 (120)
T COG2044 17 ERAYAPFVMATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVC 81 (120)
T ss_pred HHHHhHHHHHHHHHhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEE
Confidence 677777777766654222222223344556665 2221111112489999999999999998864
No 213
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=29.97 E-value=2e+02 Score=28.14 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=32.5
Q ss_pred ccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecC
Q 003153 549 AQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPM 605 (843)
Q Consensus 549 Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~ 605 (843)
.++.||||+-|-. |+++..| ++..|...+++...+-...+|+-++-.
T Consensus 81 ~k~~iYleDlyV~------e~yR~kG----~Gs~Ll~~va~~A~~~G~~rv~w~vld 127 (163)
T KOG3216|consen 81 GKQGIYLEDLYVR------EQYRGKG----IGSKLLKFVAEEADKLGTPRVEWVVLD 127 (163)
T ss_pred ccceEEEEeeEec------chhcccC----hHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4678999998887 4444444 356677777766555556788888763
No 214
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=29.04 E-value=4.5e+02 Score=29.97 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=59.4
Q ss_pred CCcEEEEEECCEEEEEeeeccC----CCCC-eee---eeEEEeec-------CC-----CceEEEEEEeCCC-------C
Q 003153 64 SDPYVTVCLGGATVARTRVISN----CQNP-IWN---EHFKIPLA-------HP-----VSQIEFYVKDNDV-------F 116 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~rT~vi~~----~~nP-~Wn---E~f~~~v~-------~~-----~~~l~~~V~d~d~-------~ 116 (843)
+..||+|.|.+-.. +|..+.- +.+| .-+ ..|++.-+ .+ ...|+|.||.-.. .
T Consensus 36 spCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 36 SPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 56799999987444 4443321 1121 111 33444311 11 1358999997332 2
Q ss_pred CCcceeEEEecccccc-cCCc---eeeEEEcccCCCC-CCCCcceEEEEEEEEeccCCCccc
Q 003153 117 GADLIGVATIPAARIK-SGES---ISDWFPILGLYGK-PPKSETAVFMEMRFLPCEENPLYR 173 (843)
Q Consensus 117 ~~~~IG~~~ipl~~l~-~g~~---~~~w~~L~~~~~~-~~~~~g~l~l~l~~~~~~~~~~~~ 173 (843)
+.++||++.|||+--- .+.+ ..+|..|-....+ ......+||+.++-.| ||.|.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep---DPRfV 173 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP---DPRFV 173 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC---CCeeE
Confidence 3589999999997321 2333 3589999443221 1124678999887544 55543
No 215
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=27.49 E-value=40 Score=39.04 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=22.9
Q ss_pred EEeeeEEEE---ee-eEEEEcccCccCCCcCCCCCcceEEee
Q 003153 692 YVHAKGMVV---DD-EYVILGSANINQRSLAGGRDTEIAMGA 729 (843)
Q Consensus 692 yvHsKlmIV---DD-~~~iiGSANin~RSm~~~rDsEi~v~i 729 (843)
--|||+||. |+ --++|.||||...-+.. -|=++-+
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~~---~~q~vw~ 139 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDWNN---KTQGVWI 139 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHHCS---SB-EEEE
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHHCC---cceeEEE
Confidence 479999998 56 78999999998877742 4545554
No 216
>PF13289 SIR2_2: SIR2-like domain
Probab=24.81 E-value=2.5e+02 Score=26.16 Aligned_cols=65 Identities=22% Similarity=0.466 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhc-C---CeEEEEEeCCccccccccc
Q 003153 226 RCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQE-G---VRVLLLVWDDKTSHSKFFI 301 (843)
Q Consensus 226 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~-G---V~VriLvwd~~~s~~~~~~ 301 (843)
..|...+.++..++..|+| ||++.+ ..+..+|..+.+. | -++++++.+..
T Consensus 74 ~~~~~~l~~~l~~~~~lfi-Gys~~D-----------------~~i~~~l~~~~~~~~~~~~~~~~v~~~~~-------- 127 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFI-GYSFND-----------------PDIRQLLRSALENSGKSRPRHYIVIPDPD-------- 127 (143)
T ss_pred HHHHHHHHHHHcCCCEEEE-EECCCC-----------------HHHHHHHHHHHHhccCCCccEEEEEcCCc--------
Confidence 3455566666677766655 998642 3455666555443 3 36777763322
Q ss_pred ccccccCCChHHHHhhhcCCCcEE
Q 003153 302 NTAGVMQTHDEETRKFFKHSSVHC 325 (843)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~v~v 325 (843)
++...++++..||++
T Consensus 128 ---------~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 ---------DENEREFLEKYGIEV 142 (143)
T ss_pred ---------hHHHHHHHHHcCCEE
Confidence 134566777778875
No 217
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=22.99 E-value=2e+02 Score=26.40 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=39.5
Q ss_pred eEEEEEEeCCC---CC-CcceeEEEeccccccc--------------CCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 105 QIEFYVKDNDV---FG-ADLIGVATIPAARIKS--------------GESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 105 ~l~~~V~d~d~---~~-~~~IG~~~ipl~~l~~--------------g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
.|.+.+++-.. .. ..+||.+.|++.+... ...+.+-|+|.+..+++ .|+|.+.++..-
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~---~G~I~l~iRLsc 105 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNP---VGEISLYIRLSC 105 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCce---eeeEEEEEEEec
Confidence 46666665322 23 5899999999877651 22456789999888775 588887776543
No 218
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=22.07 E-value=2.8e+02 Score=26.90 Aligned_cols=69 Identities=26% Similarity=0.199 Sum_probs=39.1
Q ss_pred CCcEEEEEECC------EEEEEeeeccCC-CC-CeeeeeEEEeecC------CCceEEEEEEeCCCCC--CcceeEEEec
Q 003153 64 SDPYVTVCLGG------ATVARTRVISNC-QN-PIWNEHFKIPLAH------PVSQIEFYVKDNDVFG--ADLIGVATIP 127 (843)
Q Consensus 64 ~DpYv~v~l~~------~~~~rT~vi~~~-~n-P~WnE~f~~~v~~------~~~~l~~~V~d~d~~~--~~~IG~~~ip 127 (843)
.|||++|++-+ +..+.|.+-... .| =.|| +.+++.. ..+.|.|++++..... ....+-+.++
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~--~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme 108 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFN--NTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFME 108 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEE--EEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEE
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEc--ccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEE
Confidence 68999999853 345567665332 22 3444 4444433 3456899999976554 3567888889
Q ss_pred ccccccC
Q 003153 128 AARIKSG 134 (843)
Q Consensus 128 l~~l~~g 134 (843)
++++..|
T Consensus 109 ~dei~~g 115 (147)
T PF14186_consen 109 LDEIKPG 115 (147)
T ss_dssp GGG--SE
T ss_pred hhhccCC
Confidence 9999877
Done!