Query 003153
Match_columns 843
No_of_seqs 511 out of 3637
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 5.7E-34 2E-38 331.1 21.4 379 225-735 65-476 (506)
2 3hsi_A Phosphatidylserine synt 100.0 3.9E-30 1.3E-34 292.6 22.1 356 193-733 24-401 (458)
3 1xdp_A Polyphosphate kinase; P 99.8 8.9E-20 3E-24 214.9 19.3 143 225-443 346-494 (687)
4 2fk9_A Protein kinase C, ETA t 99.8 6.1E-20 2.1E-24 178.6 12.9 129 7-164 23-156 (157)
5 2o8r_A Polyphosphate kinase; s 99.8 3E-18 1E-22 200.1 22.3 269 225-734 351-638 (705)
6 1gmi_A Protein kinase C, epsil 99.8 1.8E-18 6.3E-23 164.7 14.7 130 9-166 2-134 (136)
7 2ep6_A MCTP2 protein; beta san 99.8 2E-18 6.8E-23 163.7 13.8 130 1-164 1-131 (133)
8 1wfj_A Putative elicitor-respo 99.8 1.5E-18 5E-23 165.2 12.2 125 9-168 6-133 (136)
9 3b7y_A E3 ubiquitin-protein li 99.8 5.3E-18 1.8E-22 164.8 15.5 123 12-165 19-153 (153)
10 2dmh_A Myoferlin; beta-sandwic 99.8 7.7E-18 2.6E-22 161.0 16.0 124 11-168 5-136 (140)
11 3kwu_A MUNC13-1; calcium bindi 99.8 2.1E-17 7.2E-22 159.6 17.8 121 10-164 14-146 (148)
12 3m7f_B E3 ubiquitin-protein li 99.7 3.1E-17 1.1E-21 163.4 15.0 124 12-166 7-142 (176)
13 1rlw_A Phospholipase A2, CALB 99.7 2.8E-17 9.5E-22 154.1 12.8 116 12-163 2-123 (126)
14 3pyc_A E3 ubiquitin-protein li 99.7 1.9E-16 6.5E-21 149.8 15.3 120 13-163 5-131 (132)
15 2nq3_A Itchy homolog E3 ubiqui 99.7 1.9E-16 6.6E-21 157.0 13.9 126 10-168 33-164 (173)
16 2b3r_A Phosphatidylinositol-4- 99.6 1.3E-15 4.5E-20 144.6 13.1 106 10-146 17-131 (134)
17 4ggj_A Mitochondrial cardiolip 99.6 6.5E-16 2.2E-20 156.4 11.4 134 225-445 45-179 (196)
18 1rsy_A Synaptotagmin I; calciu 99.6 1E-15 3.5E-20 148.5 11.6 104 12-145 41-150 (152)
19 3f04_A Synaptotagmin-1; C2A, c 99.6 1.1E-15 3.7E-20 146.6 10.7 103 12-144 33-141 (143)
20 1a25_A CALB, protein kinase C 99.6 1.7E-15 5.8E-20 146.4 11.5 105 11-146 29-140 (149)
21 2d8k_A Synaptotagmin VII; exoc 99.6 2.6E-15 8.8E-20 143.7 12.5 106 12-147 25-137 (141)
22 2q3x_A Regulating synaptic mem 99.6 1.6E-15 5.5E-20 150.2 11.2 106 11-146 28-140 (171)
23 3fdw_A Synaptotagmin-like prot 99.6 9.6E-16 3.3E-20 148.0 9.3 108 12-149 22-138 (148)
24 3rdl_A Protein kinase C alpha 99.6 2E-15 6.8E-20 143.5 11.0 105 11-146 14-125 (137)
25 2r83_A Synaptotagmin-1; C2A-C2 99.6 5.3E-15 1.8E-19 158.6 15.6 124 12-165 18-147 (284)
26 2z0u_A WW domain-containing pr 99.6 7.8E-16 2.7E-20 149.8 7.7 103 12-144 42-154 (155)
27 1rh8_A Piccolo protein; beta-s 99.6 6.8E-16 2.3E-20 147.8 6.6 107 10-146 15-139 (142)
28 2bwq_A Regulating synaptic mem 99.6 3.3E-15 1.1E-19 140.5 11.1 102 12-144 17-129 (129)
29 1wfm_A Synaptotagmin XIII; C2 99.6 7.5E-15 2.6E-19 140.0 12.8 102 12-146 25-133 (138)
30 1v27_A Regulating synaptic mem 99.6 3.4E-15 1.2E-19 142.6 10.1 106 12-148 20-136 (141)
31 3fbk_A RGS3, RGP3, regulator o 99.6 8E-15 2.7E-19 142.4 12.4 106 11-147 25-139 (153)
32 2chd_A Rabphilin-3A, exophilin 99.6 6.9E-15 2.3E-19 140.8 10.6 103 12-144 28-139 (142)
33 2dmg_A KIAA1228 protein; beta- 99.6 5.9E-15 2E-19 141.3 9.7 106 12-148 23-138 (142)
34 3n5a_A Synaptotagmin-7; calciu 99.6 1.4E-14 4.7E-19 137.7 11.5 107 12-150 15-129 (138)
35 1tjx_A Similar to synaptotagmi 99.6 1.7E-14 5.7E-19 141.0 12.1 104 12-145 24-147 (159)
36 2cm5_A Rabphilin-3A; protein t 99.6 1.9E-14 6.6E-19 141.7 12.6 103 12-146 36-146 (166)
37 1ugk_A Synaptotagmin IV, KIAA1 99.5 2.1E-14 7.1E-19 136.8 12.2 105 12-146 21-134 (138)
38 1w15_A Synaptotagmin IV; metal 99.5 5.4E-15 1.9E-19 143.5 8.1 106 12-149 29-142 (153)
39 1byr_A Protein (endonuclease); 99.5 3.2E-14 1.1E-18 138.2 13.1 135 225-444 13-149 (155)
40 2enp_A B/K protein; C2 type 1, 99.5 1.1E-14 3.8E-19 140.3 8.5 111 12-146 25-142 (147)
41 3l9b_A Otoferlin; C2-domain, b 99.5 1.1E-13 3.8E-18 129.4 12.0 116 14-167 22-142 (144)
42 1dqv_A Synaptotagmin III; beta 99.5 1.8E-13 6.1E-18 147.7 13.6 123 12-165 19-149 (296)
43 2cjt_A UNC-13 homolog A, MUNC1 99.5 1.9E-13 6.5E-18 129.0 12.1 85 13-134 5-91 (131)
44 4gel_A Mitochondrial cardiolip 99.5 1.1E-13 3.6E-18 142.8 10.9 155 221-445 53-211 (220)
45 1byr_A Protein (endonuclease); 99.4 4.7E-13 1.6E-17 129.9 11.6 134 536-757 13-147 (155)
46 1djx_A PLC-D1, phosphoinositid 99.4 5.5E-13 1.9E-17 157.2 13.9 122 11-164 495-623 (624)
47 4ggj_A Mitochondrial cardiolip 99.4 1.9E-13 6.4E-18 138.3 8.3 133 536-758 45-177 (196)
48 3jzy_A Intersectin 2; C2 domai 99.4 8.5E-13 2.9E-17 153.3 14.6 116 12-164 386-507 (510)
49 3nsj_A Perforin-1; pore formin 99.4 2E-12 6.9E-17 149.2 15.0 105 13-162 394-501 (540)
50 3bxj_A RAS GTPase-activating p 99.4 4.4E-14 1.5E-18 162.4 1.1 125 11-170 9-162 (483)
51 2cjs_A UNC-13 homolog A, MUNC1 99.4 2.5E-12 8.6E-17 126.4 12.8 85 13-133 14-99 (167)
52 2r83_A Synaptotagmin-1; C2A-C2 99.3 5.3E-12 1.8E-16 135.1 12.4 104 12-145 149-272 (284)
53 1cjy_A CPLA2, protein (cytosol 99.3 2.6E-12 8.9E-17 152.6 9.6 103 12-144 17-125 (749)
54 1dqv_A Synaptotagmin III; beta 99.2 2.8E-12 9.4E-17 138.4 4.3 108 12-150 151-266 (296)
55 3qr0_A Phospholipase C-beta (P 99.1 3.8E-10 1.3E-14 135.5 12.7 116 12-168 649-774 (816)
56 3ohm_B 1-phosphatidylinositol- 99.1 2.8E-10 9.5E-15 137.4 10.8 115 12-167 724-847 (885)
57 4gel_A Mitochondrial cardiolip 99.1 3.3E-10 1.1E-14 116.5 9.9 153 536-758 57-209 (220)
58 2zkm_X 1-phosphatidylinositol- 99.0 4.3E-10 1.5E-14 135.8 11.8 112 12-164 677-798 (799)
59 1xdp_A Polyphosphate kinase; P 99.0 5.4E-10 1.9E-14 131.9 9.2 118 540-734 350-479 (687)
60 3pfq_A PKC-B, PKC-beta, protei 99.0 8.7E-10 3E-14 132.2 10.7 105 11-146 170-281 (674)
61 1yrk_A NPKC-delta, protein kin 98.9 2.4E-08 8.1E-13 90.7 14.1 89 64-164 27-124 (126)
62 2enj_A NPKC-theta, protein kin 98.9 1.5E-08 5.1E-13 93.1 12.3 93 64-168 32-133 (138)
63 3hsi_A Phosphatidylserine synt 98.7 3.9E-08 1.3E-12 111.8 12.5 127 536-719 36-166 (458)
64 1v0w_A Phospholipase D; hydrol 98.6 1.4E-07 4.7E-12 109.2 11.4 138 536-732 65-207 (506)
65 2o8r_A Polyphosphate kinase; s 97.9 3.4E-05 1.2E-09 90.5 11.8 119 539-734 354-486 (705)
66 3qph_A TRMB, A global transcri 95.7 0.015 5E-07 63.3 7.2 48 225-289 118-165 (342)
67 3qph_A TRMB, A global transcri 94.8 0.014 4.9E-07 63.4 3.8 51 536-606 118-168 (342)
68 2f5t_X Archaeal transcriptiona 94.2 0.055 1.9E-06 55.3 6.2 50 225-291 9-58 (233)
69 2c1l_A Restriction endonucleas 77.2 12 0.00041 37.7 9.9 39 692-732 103-144 (358)
70 2yrb_A Protein fantom; beta sa 73.8 10 0.00034 35.8 8.0 97 66-164 44-149 (156)
71 3l4c_A Dedicator of cytokinesi 58.5 17 0.0006 36.2 6.7 40 76-115 77-119 (220)
72 2wxf_A Phosphatidylinositol-4, 54.5 24 0.00082 43.0 8.4 70 11-113 215-293 (940)
73 3hhm_A Phosphatidylinositol-4, 49.1 42 0.0014 41.4 9.2 85 12-128 354-452 (1091)
74 2f5t_X Archaeal transcriptiona 43.7 50 0.0017 33.2 7.5 50 536-605 9-58 (233)
75 1e7u_A Phosphatidylinositol 3- 36.2 94 0.0032 38.0 9.5 51 64-114 238-296 (961)
76 1q32_A TDP1P;, tyrosyl-DNA pho 30.3 15 0.00052 41.8 1.3 41 686-729 424-487 (544)
77 3ech_C 25-MER fragment of prot 27.4 50 0.0017 20.1 2.5 19 773-791 3-22 (25)
78 2y3a_A Phosphatidylinositol-4, 23.8 79 0.0027 39.1 5.9 51 64-114 371-430 (1092)
79 3sq7_A Tyrosyl-DNA phosphodies 20.8 38 0.0013 37.8 2.1 22 692-713 103-128 (470)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=5.7e-34 Score=331.06 Aligned_cols=379 Identities=16% Similarity=0.110 Sum_probs=204.0
Q ss_pred hhHHHHHHHHHHhccceEEEEEEee-ceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcC--CeEEEEEeCCccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSV-FHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEG--VRVLLLVWDDKTSHSKFFI 301 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~-~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~G--V~VriLvwd~~~s~~~~~~ 301 (843)
+++|++|+++|++||++|+|+.|.+ .++ . .+.+|.++|.+||+|| |+||||+ |..++.....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d-------~------~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~- 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG-------A------FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH-------H------HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC-------h------HHHHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-
Confidence 6789999999999999999999984 431 1 2468999999999999 9999998 5543221100
Q ss_pred ccccccCCChHHHHhhhcCCCcE------EEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccc
Q 003153 302 NTAGVMQTHDEETRKFFKHSSVH------CVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGL 375 (843)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~v~------v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~ 375 (843)
......+.|+..|++ +... .+.. ....+.+||+|++|||++ +||+||+
T Consensus 130 --------~~~~~~~~L~~~g~~~~~~~~~~~~-~~~~---------~~~~~~r~H~K~~ViD~~--------~a~~Gg~ 183 (506)
T 1v0w_A 130 --------IPSKYRDELTAKLGKAAENITLNVA-SMTT---------SKTAFSWNHSKILVVDGQ--------SALTGGI 183 (506)
T ss_dssp --------HHHHHHHHHHHHHGGGGGGEEEEEE-EECS---------BTTTTBCBCCCEEEETTT--------EEEEESC
T ss_pred --------CCHHHHHHHHhcccceeecCccccc-cccc---------cCCccccceeeEEEECCc--------EEEeecc
Confidence 012334445443332 2210 0000 001124899999999998 9999999
Q ss_pred cCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcccccccccccc
Q 003153 376 DLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGQRFKR 455 (843)
Q Consensus 376 dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~ 455 (843)
|++.++|.+. ..+|||++++|+||+|.++...|.++|+....... .+.
T Consensus 184 Nl~~d~y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~---~~~- 231 (506)
T 1v0w_A 184 NSWKDDYLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKS---NIA- 231 (506)
T ss_dssp CCCHHHHTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTT---STT-
T ss_pred ccCccccccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccC---Chh-
Confidence 9987677531 13799999999999999999999999997643210 000
Q ss_pred cccccchhh--hhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeee--------EEEecccCCCCCCCCcchHHHHHhh
Q 003153 456 VTRWHDDAL--IKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHV--------QVFRSIDSGSVKGFPKDVYQAELQN 525 (843)
Q Consensus 456 ~~~~~~~~l--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v--------qv~rs~~~~~~~~~p~~~~~~~~~~ 525 (843)
..|....- .....+...+.|.. ....+...+ |++++.+......+... +...-
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~p~~-------------~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~---~~~~~ 294 (506)
T 1v0w_A 232 -SVWFAASGNAGCMPTMHKDTNPKA-------------SPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPT---ASDTK 294 (506)
T ss_dssp -TEEEEESTTCCCCTTHHHHHSCSS-------------CCCCSSEEEEEEECCCSSSCSCCTTCCCCCCCCC---CSSSC
T ss_pred -hhccccccccccCchhccccCccc-------------CcccccccceecccccceeecCCccccccccCcc---cccce
Confidence 00100000 00000000000000 000122222 22222211000000000 00000
Q ss_pred hhcccc--------cchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCc
Q 003153 526 LVCAKN--------LVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERF 597 (843)
Q Consensus 526 l~~~~~--------~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~ 597 (843)
+++..+ ...+.++..+|+++|.+||++|||++|||.+-.. |.. .....+..+|.+|.++ ||
T Consensus 295 ~~~d~P~~~~~~~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~--p~~-------~~~~~i~~aL~~Aa~r--GV 363 (506)
T 1v0w_A 295 CVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCP--PLP-------RYDIRLYDALAAKMAA--GV 363 (506)
T ss_dssp SSTTCCCTTTSCHHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTT--TSC-------SCCHHHHHHHHHHHHT--TC
T ss_pred eeccccccccCcccccccccHHHHHHHHHhCcCcEEEEEecccccccc--Ccc-------cchHHHHHHHHHHHhC--CC
Confidence 000000 0124679999999999999999999977653110 110 0124677777777654 59
Q ss_pred EEEEEecCCCCCCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCcEEEeecCCccCCCCCCCCCC
Q 003153 598 AVYVVMPMWPEGAPSSAS----VQEILYWQGQTRQMMYEIIAQELNSMQMENS--HPQDYLNFYCLGNREEVPQGEPGLN 671 (843)
Q Consensus 598 ~V~IVlP~~peg~~~~~~----~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~--~p~~yl~f~~l~~~~~~~~~~~~~~ 671 (843)
+|+||+|..+.......+ ...++.. ...+.. ...|.++|+... .+...+.++..+.... .+|..
T Consensus 364 ~VrIl~~~~~~~~~~~~a~~~~~~~L~~~-~~~l~~-----gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~---~~~~~- 433 (506)
T 1v0w_A 364 KVRIVVSDPANRGAVGSGGYSQIKSLSEI-SDTLRN-----RLANITGGQQAAKTAMCSNLQLATFRSSPN---GKWAD- 433 (506)
T ss_dssp EEEEEECCGGGCC------CCCCSCTHHH-HHHHHH-----HHHHHHTSHHHHHHHHHHHEEEEECCSSSS---SSCTT-
T ss_pred cEEEEeCCCCchHHHHHhHHHHHHHHHHh-hhhhcc-----cchhcccccchhccccccceeeeeccccCc---ccccc-
Confidence 999999976522110000 0000000 000000 011212221000 0000123333221100 01210
Q ss_pred CCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcc
Q 003153 672 NQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHT 735 (843)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~ 735 (843)
+...++|+|+|||||++++|||+|||.||| +|++++|++++.+
T Consensus 434 ----------------~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~a 476 (506)
T 1v0w_A 434 ----------------GHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAA 476 (506)
T ss_dssp ----------------SCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHH
T ss_pred ----------------CccccceEEEEEECCcEEEEeCCCCCCcch-----hhceeEecCHHHH
Confidence 013479999999999999999999999999 4999999987543
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.97 E-value=3.9e-30 Score=292.64 Aligned_cols=356 Identities=13% Similarity=0.091 Sum_probs=206.9
Q ss_pred ccCceeEEeecccCCCCCCCceeeccCcccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHH
Q 003153 193 RNGGHVTLYQDAHVPESMLPEIELEKGIQYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLG 272 (843)
Q Consensus 193 ~~gn~v~l~~d~~~~~~~~p~~~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~ 272 (843)
..++.|+++.+| .++|+++.++|.+|+++|+|+.|.|.++ . .+..|.
T Consensus 24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~d-------~------~g~~l~ 70 (458)
T 3hsi_A 24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQKD-------E------AGQEIL 70 (458)
T ss_dssp CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCSS-------H------HHHHHH
T ss_pred ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEecC-------c------HHHHHH
Confidence 368999999996 7889999999999999999999987542 1 246899
Q ss_pred HHHHHhhhc--CCeEEEEEeCCcc-cccccccccccccCCC-hHHHHhhhcC--CCcEEE--eCCCCCCCccchhhcccc
Q 003153 273 DLLKYKSQE--GVRVLLLVWDDKT-SHSKFFINTAGVMQTH-DEETRKFFKH--SSVHCV--LSPRYASSKLSIFKQQVV 344 (843)
Q Consensus 273 ~lL~~ka~~--GV~VriLvwd~~~-s~~~~~~~~~~~~~~~-~~~~~~~l~~--~~v~v~--~~~~~~~~~~~~~~~~~~ 344 (843)
++|.+||+| ||+||||+ |+.. +....+ ..... .......|.. .+|+|. ++. .|.. ..
T Consensus 71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g-----~~~~~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~--------~~ 135 (458)
T 3hsi_A 71 DEIYRVKQENPHLDVKVLI-DWHRAQRNLLG-----AEKSATNADWYCEQRQTYQLPDDPNMFFG-VPIN--------TR 135 (458)
T ss_dssp HHHHHHHHHSTTCEEEEEE-ETTGGGSCCC----------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS--------SS
T ss_pred HHHHHHHhcCCCCEEEEEE-ECccccccccc-----cccccccHHHHHHHHhhCCCceEeeeecC-Cccc--------cc
Confidence 999999999 99999997 7631 110000 00000 1223333333 336665 442 1111 01
Q ss_pred cccccCccceEEeccCCCCCCcceEEEeccccCCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeee
Q 003153 345 GTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKI 424 (843)
Q Consensus 345 ~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v 424 (843)
..+.++|+|++|||++ + ++||+|+.+.++ +.. .....|.|+ .+
T Consensus 136 ~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~-~~~-------------------------~~~~~drd~--~i 178 (458)
T 3hsi_A 136 EVFGVLHVKGFVFDDT--------V-LYSGASINNVYL-HQF-------------------------EKYRYDRYQ--KI 178 (458)
T ss_dssp GGGCCEECCEEEETTE--------E-EEESCCBSTTTT-TCS-------------------------SCCEECCEE--EE
T ss_pred cccCcceeeEEEECCC--------E-EEEeeecCHHHh-cCC-------------------------cccCcchhh--hh
Confidence 2456899999999997 7 556699999443 211 011247774 48
Q ss_pred eChHHHHHHHHH--HHHHhhhcccccccccccc-cccccchhhhhh-hhcccccCCCCCCCCCCCCCCcccCCCCCCeee
Q 003153 425 EGPAAYDVLTNF--EQRWRKATKWSEFGQRFKR-VTRWHDDALIKL-ERISWILSPSSSVPNDHPKLWVSEEDDPQNWHV 500 (843)
Q Consensus 425 ~Gpaa~dl~~~F--~~rW~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v 500 (843)
.||++.|....| ...|+...-.. +...+.. ...|... ...+ +.++.. ....++. ...+...+
T Consensus 179 ~g~~~~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~~~~----------~~~~~~~~ 244 (458)
T 3hsi_A 179 THAELADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGN-IRAYRKDLAQN--GEYSLKS----------AVKLPNVL 244 (458)
T ss_dssp ECHHHHHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHH-HHHHHHHHHHH--CCCCCSS----------CBSSCSSC
T ss_pred cCchHHHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHH-HHHHHHhhhhc--ccccccc----------cCCCCceE
Confidence 999999999888 44575432110 0000000 0011110 0000 001000 0000010 00011123
Q ss_pred EEEecccCCCCCCCCcchHHHHHhhhhcccccchhhHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccH
Q 003153 501 QVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIP 580 (843)
Q Consensus 501 qv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~ 580 (843)
|+......+ + .+..+..+|+++|.+|++.|||+++||++.
T Consensus 245 ~v~p~~~~~-----~------------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~----------------- 284 (458)
T 3hsi_A 245 SVSPLFGLG-----A------------------SGNELNQVIEDLFLQVQKKLVICTPYFNFP----------------- 284 (458)
T ss_dssp EEEEEEEES-----S------------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCC-----------------
T ss_pred EEecCCCCC-----C------------------chhHHHHHHHHHHHhcccEEEEEEeccCCC-----------------
Confidence 443211000 0 135788999999999999999999999942
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCCCCCC----CCChhHHHHHHHHHHHH--HHHHHH---HHHHHHhcC-CCCCCCCC
Q 003153 581 MELALKIASKIRAKERFAVYVVMPMWPEGA----PSSASVQEILYWQGQTR--QMMYEI---IAQELNSMQ-MENSHPQD 650 (843)
Q Consensus 581 ~~~a~~ia~a~~~~~~~~V~IVlP~~peg~----~~~~~~~~~~~~~~~t~--~~~~~~---i~~~L~~~g-~~~~~p~~ 650 (843)
..+..+|..+.+ +||+|+||+|.....+ ++...+ .+..... +..... -++.|.++| +.
T Consensus 285 ~~~~~aL~~Aa~--rGV~VrIi~~~~~and~y~~~~~~~~----~~~~~~~lye~~~~~f~~~~~~l~~~G~i~------ 352 (458)
T 3hsi_A 285 RTLQHKIATLLE--NGKRVEIIVGDKVANDFYIPPEQPFK----MAGALPYLYESNLRRFCEKFETQIESGQLV------ 352 (458)
T ss_dssp HHHHHHHHHHHT--TTCEEEEEEECGGGSTTCCCTTSCCC----GGGGHHHHHHHHHHHHHHHTHHHHHHTSEE------
T ss_pred HHHHHHHHHHHH--CCCeEEEEECCccccCCccCCcchhh----hhcchHHHHHHhhhhhHHHHHHHHhCCCeE------
Confidence 356667777654 5599999999753111 111100 0111110 000000 123555667 21
Q ss_pred cEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEeeeEEEEeeeEEEEcccCccCCCcCCCCCcceEEeee
Q 003153 651 YLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHAKGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAY 730 (843)
Q Consensus 651 yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHsKlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~ 730 (843)
+.+|. |. ..++|+|+|||||++++|||+|||.||+. .|+|++++|+
T Consensus 353 -V~i~~-----------~~--------------------~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~ 398 (458)
T 3hsi_A 353 -VRLWR-----------DG--------------------DNTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIY 398 (458)
T ss_dssp -EEEEC-----------BT--------------------TBEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEE
T ss_pred -EEEEe-----------cC--------------------CCceeEEEEEECCeEEEecCCCCCcchhh--hCceeEEEEe
Confidence 12332 21 12799999999999999999999999997 5699999999
Q ss_pred cCC
Q 003153 731 QPH 733 (843)
Q Consensus 731 d~~ 733 (843)
+++
T Consensus 399 ~~~ 401 (458)
T 3hsi_A 399 DPQ 401 (458)
T ss_dssp CTT
T ss_pred CCc
Confidence 885
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.82 E-value=8.9e-20 Score=214.87 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHhccc-----eEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCccccccc
Q 003153 225 ERCWEDICHAILEAHH-----LVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKF 299 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~ 299 (843)
.+.|+.+.+.|.+|++ +|+|+.|.+.+ +..+.++|.+||++||+|+||+ |..+...
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~----------------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~-- 406 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK----------------DSRIIDSMIHAAHNGKKVTVVV-ELQARFD-- 406 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT----------------TCHHHHHHHHHHHTTCEEEEEE-CTTCSST--
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecC----------------cHHHHHHHHHHHhcCCEEEEEE-CCCcccc--
Confidence 4568899999999997 99998886532 2589999999999999999998 7654211
Q ss_pred ccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCC
Q 003153 300 FINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCD 379 (843)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~ 379 (843)
. .......+.|..+||++..... .+++|.|++|||++..+. -+..+|+||.|+..
T Consensus 407 --~------~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~re~~~-i~~~a~iGS~N~d~ 461 (687)
T 1xdp_A 407 --E------EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRKENGE-VVRYAHIGTGNFNE 461 (687)
T ss_dssp --T------TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEEETTE-EEEEEEEESSCSCT
T ss_pred --h------hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEeccCCe-EEEEEEEeCCcCCc
Confidence 0 0011344567788999875421 135899999999521000 00139999999877
Q ss_pred cccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh-HHHHHHHHHHHHHhhh
Q 003153 380 GRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP-AAYDVLTNFEQRWRKA 443 (843)
Q Consensus 380 ~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 443 (843)
.-+ ..|+|+++.+.|| +|.++...|...|..+
T Consensus 462 rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s 494 (687)
T 1xdp_A 462 KTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPY 494 (687)
T ss_dssp TGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTT
T ss_pred chh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 211 2588999999987 5899999999999753
No 4
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=178.57 Aligned_cols=129 Identities=20% Similarity=0.325 Sum_probs=107.0
Q ss_pred ceEEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCC
Q 003153 7 TIVYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNC 86 (843)
Q Consensus 7 ~~~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~ 86 (843)
++++++|.|+|+|++|++|+++|..++.+ +|.+ ..+++||||+|.+++.+++||++++++
T Consensus 23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~------------------~~g~sDPYv~v~l~~~~~~kT~v~~kt 82 (157)
T 2fk9_A 23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK------------------GHQLLDPYLTVSVDQVRVGQTSTKQKT 82 (157)
T ss_dssp -CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS------------------SCCCCCEEEEEEETTEEEEECCCCSSC
T ss_pred hhccCccEEEEEEEEEECCCCcccccccc--cccc------------------CCCCCCeEEEEEECCEeeEEeeecCCC
Confidence 45678999999999999999887543210 1110 113489999999999888999999999
Q ss_pred CCCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccC----CceeeEEEcccCCCCCCCCcceEEEEE
Q 003153 87 QNPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG----ESISDWFPILGLYGKPPKSETAVFMEM 161 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g----~~~~~w~~L~~~~~~~~~~~g~l~l~l 161 (843)
.||+|||+|.|.+.. ...|.|+|||+|.++ +++||++.||++++..+ ...+.||+|. +.|+|+|++
T Consensus 83 lnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l 153 (157)
T 2fk9_A 83 NKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVI 153 (157)
T ss_dssp SSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEE
T ss_pred CCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEE
Confidence 999999999999864 468999999999998 89999999999999865 6789999994 269999999
Q ss_pred EEE
Q 003153 162 RFL 164 (843)
Q Consensus 162 ~~~ 164 (843)
+|.
T Consensus 154 ~~~ 156 (157)
T 2fk9_A 154 TLT 156 (157)
T ss_dssp EEC
T ss_pred EEE
Confidence 874
No 5
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.79 E-value=3e-18 Score=200.14 Aligned_cols=269 Identities=15% Similarity=0.175 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHhccc-----eEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCccccccc
Q 003153 225 ERCWEDICHAILEAHH-----LVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKF 299 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~ 299 (843)
.+.|+.+.++|++|++ +|.++.|.+.. +..+.++|.+||++||+|++|+ | .++..
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~----------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arf-- 410 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-E-LKARF-- 410 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcC----------------CHHHHHHHHHHHHCCCEEEEEE-e-CCCCc--
Confidence 5679999999999999 99999887642 2689999999999999999998 7 43321
Q ss_pred ccccccccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccC--CCCCCcceEEEeccccC
Q 003153 300 FINTAGVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQ--ASGNNRKITAFIGGLDL 377 (843)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~--~~~~~~~~vafvGG~dl 377 (843)
.. ..+....+.|+.+||+|... . ..+++|+|++|||++ -.|.- +..+++|.-|+
T Consensus 411 de-------e~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~ 466 (705)
T 2o8r_A 411 DE-------ENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCS
T ss_pred ch-------hhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCCce-eEEEeccccce
Confidence 00 01235677888999998742 1 135799999999985 22211 11333332222
Q ss_pred CCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh-HHHHHHHHHHHHHhhhccccccccccccc
Q 003153 378 CDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP-AAYDVLTNFEQRWRKATKWSEFGQRFKRV 456 (843)
Q Consensus 378 ~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~~~~~~~~~~~~~ 456 (843)
.+ . . -.-|.|+++...+| ++.|+...|...|.....
T Consensus 467 n~-----~--------------------------t-ariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~----------- 503 (705)
T 2o8r_A 467 NE-----T--------------------------T-ARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP----------- 503 (705)
T ss_dssp SC-----C--------------------------C-SSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC-----------
T ss_pred ee-----e--------------------------E-EEEEeeeeeeecChHHHHHHHHHHHHHhCCCCC-----------
Confidence 22 0 0 12377888888776 569999999666542100
Q ss_pred ccccchhhhhhhhcccccCCCCCCCCCCCCCCcccCCCCCCeeeEEEecccCCCCCCCCcchHHHHHhhhhcccccchhh
Q 003153 457 TRWHDDALIKLERISWILSPSSSVPNDHPKLWVSEEDDPQNWHVQVFRSIDSGSVKGFPKDVYQAELQNLVCAKNLVIDK 536 (843)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~ 536 (843)
... .|++-+ |.. ...
T Consensus 504 ---------------------------------------~~~-~~l~~s---------P~~----------------~~~ 518 (705)
T 2o8r_A 504 ---------------------------------------ARF-SRLLVA---------RYN----------------MGE 518 (705)
T ss_dssp ---------------------------------------SCC-SSCEET---------TTT----------------HHH
T ss_pred ---------------------------------------CCc-eEEEEC---------Cch----------------HHH
Confidence 000 133321 221 136
Q ss_pred HHHHHHHHHHHhccc----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCC----CC
Q 003153 537 SIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMW----PE 608 (843)
Q Consensus 537 sI~~ayl~aI~~Ak~----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~----pe 608 (843)
.|.+.+..+|.+|++ +|+|.++|+. + ..+..+|..|.++| |+|.|++-.. |
T Consensus 519 ~i~~~i~~eI~~Ak~G~~a~I~ik~n~l~-------D-----------~~ii~aL~~As~~G--V~V~LIVRGiC~L~P- 577 (705)
T 2o8r_A 519 AITNLIEREIENVKRGKRGYMLLKMNGLQ-------D-----------KNVITQLYRASEAG--VEIDLIVRGICCLVP- 577 (705)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEESCBC-------C-----------HHHHHHHHHHHHTT--CEEEEEESSCBCSCC-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCCC-------C-----------HHHHHHHHHHHHCC--CeEEEEEccccccCC-
Confidence 788999999999999 9999999843 2 35666777775555 9999999310 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccce
Q 003153 609 GAPSSASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQR 688 (843)
Q Consensus 609 g~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (843)
|.+ + . |-+.+... |.
T Consensus 578 gv~--------------------------~-s---------dni~V~Si----------vg------------------- 592 (705)
T 2o8r_A 578 DMP--------------------------Q-S---------RNIRVTRL----------VD------------------- 592 (705)
T ss_dssp SSG--------------------------G-G---------TTEEEEEC----------CS-------------------
T ss_pred CCC--------------------------C-C---------CCeEEEee----------HH-------------------
Confidence 110 0 0 01111110 00
Q ss_pred eeEEEeeeEEEE---eeeEEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 689 FMIYVHAKGMVV---DDEYVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 689 ~~iyvHsKlmIV---DD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
...=|+|+++. ||++++||||||+.|||. +.-|+++.++|+++
T Consensus 593 -r~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~ 638 (705)
T 2o8r_A 593 -MYLEHSRIWCFHNGGKEEVFISSADWMKRNLY--NRIETACPVLDPTL 638 (705)
T ss_dssp -SSEECCCEEEECGGGSCEEEEESCCBCHHHHH--TSBCEEEECCSHHH
T ss_pred -HHHhcCEEEEEECCCCcEEEEeccccchhhhh--heeEEEEEEcCHHH
Confidence 11358999999 899999999999999998 55999999999854
No 6
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.78 E-value=1.8e-18 Score=164.69 Aligned_cols=130 Identities=20% Similarity=0.384 Sum_probs=106.4
Q ss_pred EEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCC
Q 003153 9 VYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQN 88 (843)
Q Consensus 9 ~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~n 88 (843)
.+++|.|.|+|++|++|+++|.++... +. +..+...+||||+|.+++..+++|+++.++.|
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g----------------~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~n 62 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VG----------------PRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CC----------------SSCCCCCCCEEEEEEETTEEEEECCCCSSCSS
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cc----------------cccCCcCcCcEEEEEECCeEeeeeeEECCCcC
Confidence 368999999999999999887544200 00 01112348999999999988889999999999
Q ss_pred CeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccC--CceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 89 PIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG--ESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 89 P~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g--~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
|+|||+|.|.+... ..|.|+|||+|.++ +++||.+.|++.++..+ ...+.|++|. +.|+|+|+++|.+
T Consensus 63 P~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 63 PAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSG 133 (136)
T ss_dssp CEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEE
T ss_pred CccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEe
Confidence 99999999998765 78999999999887 89999999999999874 3458999984 3699999999987
Q ss_pred c
Q 003153 166 C 166 (843)
Q Consensus 166 ~ 166 (843)
.
T Consensus 134 ~ 134 (136)
T 1gmi_A 134 S 134 (136)
T ss_dssp E
T ss_pred c
Confidence 4
No 7
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.77 E-value=2e-18 Score=163.72 Aligned_cols=130 Identities=25% Similarity=0.375 Sum_probs=111.9
Q ss_pred CCCCCcceEEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEe
Q 003153 1 MGEDSETIVYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVART 80 (843)
Q Consensus 1 ~~~~~~~~~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT 80 (843)
|+.++.......|.|.|+|++|++|++++..+. +||||++.+.+. ..||
T Consensus 1 ~~~~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~-~~kT 49 (133)
T 2ep6_A 1 GSSGSSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------SDPFCLLELGND-RLQT 49 (133)
T ss_dssp CCSCCCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------CCEEEEEEETTE-EEEC
T ss_pred CCcccccccCCceEEEEEEEeeECCCCCCCCCC------------------------------cCeEEEEEECCE-EEEe
Confidence 345566666678999999999999999886654 899999999985 5599
Q ss_pred eeccCCCCCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEE
Q 003153 81 RVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFM 159 (843)
Q Consensus 81 ~vi~~~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l 159 (843)
++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.|++.++..|. ..||+|.+..++. ...|+|+|
T Consensus 50 ~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l 126 (133)
T 2ep6_A 50 HTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYL 126 (133)
T ss_dssp CCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEE
T ss_pred eeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEE
Confidence 9999999999999999999887778999999999987 899999999999998765 4899998765443 46899999
Q ss_pred EEEEE
Q 003153 160 EMRFL 164 (843)
Q Consensus 160 ~l~~~ 164 (843)
+++|.
T Consensus 127 ~i~~~ 131 (133)
T 2ep6_A 127 EMDLI 131 (133)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99885
No 8
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.77 E-value=1.5e-18 Score=165.21 Aligned_cols=125 Identities=23% Similarity=0.413 Sum_probs=108.6
Q ss_pred EEEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeecc-CCC
Q 003153 9 VYLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVIS-NCQ 87 (843)
Q Consensus 9 ~~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~-~~~ 87 (843)
....|.|.|+|++|++|++++..+. +||||+|.+.+.+ .||++++ ++.
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~kT~~~~~~~~ 54 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNN------------------------------MDPYVQLTCRTQD-QKSNVAEGMGT 54 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCS------------------------------SCCCEEEESSSCE-EECCCCTTCCS
T ss_pred CCCcEEEEEEEEeccCCCCcccCCC------------------------------cCceEEEEECCcc-ceeEeccCCCC
Confidence 3467999999999999999886654 8999999999854 5999998 899
Q ss_pred CCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEeccccc-ccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 88 NPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARI-KSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l-~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
||+|||+|.|.+......|.|+|||++.++ +++||.+.|++.++ ..+...+.||+|. ..+ +..|+|+|+++|.|
T Consensus 55 nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G~i~l~l~~~p 130 (136)
T 1wfj_A 55 TPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKGEIWVALSFKP 130 (136)
T ss_dssp SCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEEEEEEEEEEEE
T ss_pred CCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCEEEEEEEEEEe
Confidence 999999999999887778999999999987 89999999999999 4566678899997 322 35799999999999
Q ss_pred ccC
Q 003153 166 CEE 168 (843)
Q Consensus 166 ~~~ 168 (843)
...
T Consensus 131 ~~~ 133 (136)
T 1wfj_A 131 SGP 133 (136)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.76 E-value=5.3e-18 Score=164.78 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=101.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-----EEEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-----ATVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-----~~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|++++..+. +||||+|.+.+ ....||++++++
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~~kT~v~~~t 68 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGA------------------------------SDPYVRVTLYDPMNGVLTSVQTKTIKKS 68 (153)
T ss_dssp CEEEEEEEEEEESCC-------------------------------------CCEEEEEEEEETTTEEEEEEECCCCSSC
T ss_pred ccEEEEEEEEeeCCCCCCCCCC------------------------------CCcEEEEEEECCCCccceeeeCccccCC
Confidence 5899999999999998886654 89999999974 357799999999
Q ss_pred CCCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCce------eeEEEcccCCCCCCCCcceEEE
Q 003153 87 QNPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESI------SDWFPILGLYGKPPKSETAVFM 159 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~------~~w~~L~~~~~~~~~~~g~l~l 159 (843)
.||+|||+|.|.+......|.|+|||++.++ +++||.+.|++.++..+... ..||+|....++. +..|+|+|
T Consensus 69 ~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l 147 (153)
T 3b7y_A 69 LNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRL 147 (153)
T ss_dssp SSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEE
T ss_pred CCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEE
Confidence 9999999999999877778999999999987 89999999999999876542 5899997665433 56799999
Q ss_pred EEEEEe
Q 003153 160 EMRFLP 165 (843)
Q Consensus 160 ~l~~~~ 165 (843)
+++|.|
T Consensus 148 ~l~~~P 153 (153)
T 3b7y_A 148 KMTYLP 153 (153)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999976
No 10
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.7e-18 Score=161.04 Aligned_cols=124 Identities=25% Similarity=0.401 Sum_probs=107.5
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCe
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPI 90 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~ 90 (843)
..|.|.|+|++|++|+.++. +. +||||+|.+.+. .+||++++++.||+
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------~dpyv~v~~~~~-~~kT~v~~~t~nP~ 52 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------PDPIVSVIFKDE-KKKTKKVDNELNPV 52 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------CCEEEEEECSSC-EEECCCCCSCSSCE
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------CCeEEEEEECCE-eEEeeeecCCCCCc
Confidence 35899999999999998876 53 899999999985 47999999999999
Q ss_pred eeeeEEEeecCC----CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEE---cccCCCCCCCCcceEEEEEE
Q 003153 91 WNEHFKIPLAHP----VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFP---ILGLYGKPPKSETAVFMEMR 162 (843)
Q Consensus 91 WnE~f~~~v~~~----~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~---L~~~~~~~~~~~g~l~l~l~ 162 (843)
|||+|.|.+..+ ...|.|+|||++.++ +++||.+.|++.++..+...+.|++ |.+..++ ...|+|+|+++
T Consensus 53 wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~--~~~G~l~l~~~ 130 (140)
T 2dmh_A 53 WNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ--DTGATIDLVIG 130 (140)
T ss_dssp EEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC--EEEEEEEEEEE
T ss_pred cCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC--CCCCEEEEEEE
Confidence 999999999653 467999999999987 7899999999999998888899988 7665544 34699999999
Q ss_pred EEeccC
Q 003153 163 FLPCEE 168 (843)
Q Consensus 163 ~~~~~~ 168 (843)
|.|...
T Consensus 131 ~~p~~~ 136 (140)
T 2dmh_A 131 YDPPSG 136 (140)
T ss_dssp ECCCBS
T ss_pred EECCCC
Confidence 998554
No 11
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.75 E-value=2.1e-17 Score=159.58 Aligned_cols=121 Identities=26% Similarity=0.411 Sum_probs=104.4
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCC
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNP 89 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP 89 (843)
...|.|.|+|++|++|+++|..+. +||||++.+++ ...+|++++++.||
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~-~~~kT~~~~~t~nP 62 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGS------------------------------SDPYVTVQVGK-TKKRTKTIYGNLNP 62 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEETT-EEEECCCCCSCSSC
T ss_pred ccccEEEEEEEeeeCCCCCCCCCC------------------------------cCeEEEEEECC-EEEECCccCCCCCC
Confidence 457999999999999999887654 89999999987 55699999999999
Q ss_pred eeeeeEEEeecCCCceEEEEEEeCCCC-----------C-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceE
Q 003153 90 IWNEHFKIPLAHPVSQIEFYVKDNDVF-----------G-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAV 157 (843)
Q Consensus 90 ~WnE~f~~~v~~~~~~l~~~V~d~d~~-----------~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l 157 (843)
.|||+|.|.+..+...|.|+|||.+.+ + +++||++.|++.++. ...+.||+|....++. ...|+|
T Consensus 63 ~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i 139 (148)
T 3kwu_A 63 VWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAI 139 (148)
T ss_dssp EEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEE
T ss_pred CcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEE
Confidence 999999999988778899999999985 4 899999999999993 4567999997654433 457999
Q ss_pred EEEEEEE
Q 003153 158 FMEMRFL 164 (843)
Q Consensus 158 ~l~l~~~ 164 (843)
+|+++|.
T Consensus 140 ~l~l~~e 146 (148)
T 3kwu_A 140 RLHISVE 146 (148)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999985
No 12
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.73 E-value=3.1e-17 Score=163.36 Aligned_cols=124 Identities=25% Similarity=0.380 Sum_probs=99.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-----EEEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-----ATVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-----~~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|++++..+. +||||+|.+.+ ..+.+|++++++
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~~kT~v~~~t 56 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------SDPYVRVTLYDPMSGILTSVQTKTIKKS 56 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------CCEEEEEEEEETTTEEEEEEECCCCSSC
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------cCcEEEEEEECCCCCcccceeCceECCC
Confidence 4899999999999999887664 89999999975 156799999999
Q ss_pred CCCeeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCCce-e-----eEEEcccCCCCCCCCcceEEE
Q 003153 87 QNPIWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESI-S-----DWFPILGLYGKPPKSETAVFM 159 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~-~-----~w~~L~~~~~~~~~~~g~l~l 159 (843)
.||.|||.|.|.+......|.|+|||.+.++ +++||.+.|++..+..+... + .||+|....++. +..|+|+|
T Consensus 57 ~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l 135 (176)
T 3m7f_B 57 LNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRL 135 (176)
T ss_dssp SSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEE
T ss_pred CCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEE
Confidence 9999999999999877778999999999987 89999999999999876443 2 799997654432 45799999
Q ss_pred EEEEEec
Q 003153 160 EMRFLPC 166 (843)
Q Consensus 160 ~l~~~~~ 166 (843)
+++|.|.
T Consensus 136 ~l~~~p~ 142 (176)
T 3m7f_B 136 KMTYLPK 142 (176)
T ss_dssp EEEECC-
T ss_pred EEEEEeC
Confidence 9999997
No 13
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.72 E-value=2.8e-17 Score=154.11 Aligned_cols=116 Identities=24% Similarity=0.393 Sum_probs=98.1
Q ss_pred eeEEEEEEEEeeCCCCCC---CchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMD---LVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~ 86 (843)
+|.|.|+|++|++|++++ ..+ .+||||++.+.+ ...+||++++++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g------------------------------~~dpyv~v~~~~~~~~~~kT~v~~~t 51 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLD------------------------------TPDPYVELFISTTPDSRKRTRHFNND 51 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHC------------------------------CCCEEEEEECTTSTTCCEECCCCTTC
T ss_pred CcEEEEEEEeeeCCCCCCccccCC------------------------------CCCCEEEEEEccCCCceEEccccCCC
Confidence 589999999999999853 222 289999999986 367799999999
Q ss_pred CCCeeeeeEEEeecC-CCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 87 QNPIWNEHFKIPLAH-PVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~-~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
.||+|||+|.|.+.. ....|.|+|||++.+++++||.+.|++.++..|...+.|++|.+ ...|.|+|+++-
T Consensus 52 ~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~ 123 (126)
T 1rlw_A 52 INPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp SSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred CCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEe
Confidence 999999999999954 45579999999999889999999999999999999999999953 235667766653
No 14
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.70 E-value=1.9e-16 Score=149.79 Aligned_cols=120 Identities=16% Similarity=0.336 Sum_probs=100.3
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-EEEEEeeeccCCCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-ATVARTRVISNCQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-~~~~rT~vi~~~~nP~W 91 (843)
..|.|+|++|++|+++|..+. +||||+|.+.+ ...++|++++++.||+|
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------sDpyv~v~~~~~~~~~kT~v~~~t~nP~w 54 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------PDPFAKIVVDGSGQCHSTDTVKNTLDPKW 54 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------CCEEEEEEETTTCCEEECCCCSSCSSCEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------cCeEEEEEECCCCceEECCccCCCCCCCc
Confidence 579999999999999887664 89999999975 46789999999999999
Q ss_pred eeeEEEeecCCCceEEEEEEeCCCCC----CcceeEEEecccccc-cCCceeeEEEcccCC-CCCCCCcceEEEEEEE
Q 003153 92 NEHFKIPLAHPVSQIEFYVKDNDVFG----ADLIGVATIPAARIK-SGESISDWFPILGLY-GKPPKSETAVFMEMRF 163 (843)
Q Consensus 92 nE~f~~~v~~~~~~l~~~V~d~d~~~----~~~IG~~~ipl~~l~-~g~~~~~w~~L~~~~-~~~~~~~g~l~l~l~~ 163 (843)
||+|.|.+.... .|.|+|||++.++ +++||.+.|+++.+. .+.....|++|.... .++.+..|+|+|++++
T Consensus 55 ne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 55 NQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred cCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 999999997654 5999999999886 699999999999983 344455799997653 2333568999999875
No 15
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.68 E-value=1.9e-16 Score=156.98 Aligned_cols=126 Identities=19% Similarity=0.317 Sum_probs=103.7
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCC
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNP 89 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP 89 (843)
...+.|.|+|++|++|++.+..+. +||||+|.+++ .+.||++++++.||
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~------------------------------sDPYv~v~~~~-~~~kT~v~~~tlnP 81 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFG------------------------------PSPYVEVTVDG-QSKKTEKCNNTNSP 81 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCC------------------------------CCEEEEEEETT-EEEECCCCSSCSSC
T ss_pred CCceEEEEEEEEeECCCCcccCCC------------------------------CCeEEEEEECC-EEeEccccCCCCCC
Confidence 357899999999999994433332 89999999999 77799999999999
Q ss_pred eeeeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccCC-----ceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 90 IWNEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGE-----SISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 90 ~WnE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~-----~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
+|||+|.|.+. +...|.|+|||++.++ +++||.+.|++.++..+. ....|++|....+ ..+..|+|.|++.|
T Consensus 82 ~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~ 159 (173)
T 2nq3_A 82 KWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDG 159 (173)
T ss_dssp EEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEES
T ss_pred eECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEee
Confidence 99999999985 4778999999999987 789999999999997532 2367999977633 23568999999999
Q ss_pred EeccC
Q 003153 164 LPCEE 168 (843)
Q Consensus 164 ~~~~~ 168 (843)
.++..
T Consensus 160 l~~~~ 164 (173)
T 2nq3_A 160 LQLES 164 (173)
T ss_dssp EECC-
T ss_pred eecch
Confidence 98754
No 16
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=144.57 Aligned_cols=106 Identities=17% Similarity=0.356 Sum_probs=90.7
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccC
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISN 85 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~ 85 (843)
...|.|.|+|++|++|+. +..+. +||||+|.+.+ ..+.||+++++
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~------------------------------~DPyv~v~l~~~~~~~~~~kT~v~~~ 65 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGAD------------------------------PNPYVKTYLLPDTHKTSKRKTKISRK 65 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCC------------------------------CCEEEEEEEESCSSSCCCEECCCCCS
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCC------------------------------CCeEEEEEEEcCCCCCceecCCcCcC
Confidence 457899999999999996 54443 89999999832 35679999999
Q ss_pred CCCCeeeeeEEEe-ecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 86 CQNPIWNEHFKIP-LAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 86 ~~nP~WnE~f~~~-v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
+.||+|||+|.|. +.. ....|.|+|||++.++ +++||++.|++.++..+...+.||+|.+.
T Consensus 66 t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp CSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred CCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 9999999999999 754 3467999999999987 79999999999999998899999999754
No 17
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.63 E-value=6.5e-16 Score=156.37 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
+..|+.|+++|.+||++|+|+.|.|.. ..|.++|.+|++|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 567999999999999999999987632 579999999999999999997 7532110
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
.......|...||+++..... ..+|.|++|||++ ++|+||.|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~~----------------~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQDL----------------GYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCSS----------------SCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCccccccc----------------ccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 012345677889998754321 2479999999998 999999999873321
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeC-hHHHHHHHHHHHHHhhhcc
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEG-PAAYDVLTNFEQRWRKATK 445 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~G-paa~dl~~~F~~rW~~~~~ 445 (843)
-.++..+.+.+ ++|..+.+.|.+.|+....
T Consensus 149 -------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 -------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp -------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred -------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 01244555555 4789999999999997544
No 18
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=1e-15 Score=148.53 Aligned_cols=104 Identities=29% Similarity=0.476 Sum_probs=92.0
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CEEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~~~~rT~vi~~~~nP 89 (843)
.+.|.|+|++|++|+.++..+. +||||+|.+. +....||++++++.||
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP 90 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLNP 90 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEETTCCSCEECCCCTTCSSC
T ss_pred CCEEEEEEEEeECCCCccCCCC------------------------------cCeEEEEEEEcCCCceEeccccCCCCCC
Confidence 5899999999999999886554 8999999995 2356799999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEccc
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILG 145 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 145 (843)
+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++..+...+.|++|.+
T Consensus 91 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 91 VFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp EEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred cCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999999998642 467999999999987 8999999999999998989999999964
No 19
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.62 E-value=1.1e-15 Score=146.63 Aligned_cols=103 Identities=29% Similarity=0.479 Sum_probs=91.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CEEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~~~~rT~vi~~~~nP 89 (843)
.|.|.|+|++|++|+.++..+. +||||+|.+. +....||++++++.||
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP 82 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLNP 82 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBC------------------------------CCEEEEEEEESCCSCCEECCCCCSCSSC
T ss_pred CCEEEEEEEEecCCCCCCCCCC------------------------------cCcEEEEEEECCCCccEECccCcCCCCC
Confidence 5899999999999998876553 8999999994 3357799999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
+|||+|.|.+... ...|.|+|||++.++ +++||++.|++.++..+...+.|++|.
T Consensus 83 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 83 VFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp EEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 9999999998643 367999999999987 899999999999999998999999995
No 20
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.61 E-value=1.7e-15 Score=146.43 Aligned_cols=105 Identities=26% Similarity=0.433 Sum_probs=91.8
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
..|.|.|+|++|++|++++..+. +||||+|.+.+ ....||++++++
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t 78 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGL------------------------------SDPYVKLKLIPDPKSESKQKTKTIKCS 78 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEESCTTCSSCEECCCCSSC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCC------------------------------cCeEEEEEEECCCCCcceEecceeCCC
Confidence 36899999999999999886554 89999999974 457799999999
Q ss_pred CCCeeeeeEEEeecCC--CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 87 QNPIWNEHFKIPLAHP--VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~--~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++..+ ..+.||+|.+.
T Consensus 79 ~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 79 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp SSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 9999999999999753 347999999999987 89999999999999876 57899999754
No 21
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=143.69 Aligned_cols=106 Identities=28% Similarity=0.385 Sum_probs=92.3
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP 89 (843)
.+.|.|+|++|++|++++..+. +||||+|.+.+ ....||++++++.||
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP 74 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGT------------------------------SDPFVKIYLLPDKKHKLETKVKRKNLNP 74 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSC------------------------------CCEEEEEEEESCCSSEEECCCCTTCSSC
T ss_pred CCEEEEEEEEeECCCCCCCCCC------------------------------CCcEEEEEEECCCCccEeCceEcCCCCC
Confidence 6899999999999999886554 89999999953 357799999999999
Q ss_pred eeeeeEEEeecC----CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCC
Q 003153 90 IWNEHFKIPLAH----PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLY 147 (843)
Q Consensus 90 ~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~ 147 (843)
+|||+|.|.+.. ....|.|+|||++.++ +++||.+.|++.++..+...+.|++|....
T Consensus 75 ~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 75 HWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp CCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred ccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 999999998632 2467999999999987 899999999999999888889999997553
No 22
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.61 E-value=1.6e-15 Score=150.19 Aligned_cols=106 Identities=19% Similarity=0.353 Sum_probs=93.0
Q ss_pred EeeEEEEEEEEeeCCCCCCC-chhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE----EEEEeeeccC
Q 003153 11 LHGDLDLKIVEARRLPNMDL-VTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA----TVARTRVISN 85 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~----~~~rT~vi~~ 85 (843)
..|.|.|+|++|++|+++|. .+. +||||+|.+.+. .+.||+++++
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~------------------------------~DPyv~v~l~~~~~~~~~~kT~v~~~ 77 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKST------------------------------PAPYVKVYLLENGACIAKKKTRIARK 77 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CC------------------------------CEEEEEEEEEETTEEEEEEECCCCCS
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCC------------------------------CCceEEEEEECCCccccceeCccCCC
Confidence 46899999999999999885 343 899999998642 4779999999
Q ss_pred CCCCeeeeeEEEeecCCCceEEEEEE-eCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 86 CQNPIWNEHFKIPLAHPVSQIEFYVK-DNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 86 ~~nP~WnE~f~~~v~~~~~~l~~~V~-d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
+.||+|||+|.|.+......|.|+|| |+|.++ +++||.+.|++.++..+...+.||+|...
T Consensus 78 t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 78 TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 99999999999999766678999999 999987 79999999999999988889999999755
No 23
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.61 E-value=9.6e-16 Score=147.98 Aligned_cols=108 Identities=21% Similarity=0.380 Sum_probs=91.6
Q ss_pred eeEEEEEEEEeeCCCCCCC-chhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDL-VTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|+.++. .+. +||||+|.+.+ ..+.||++++++
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 71 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------SNPYVKTYLLPDKSRQGKRKTSIKRDT 71 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------CCEEEEEEEETCCSGGGEEECCCCSSC
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------CCeEEEEEEEcCCcccCccccccCCCC
Confidence 5899999999999998873 343 89999999974 237799999999
Q ss_pred CCCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCC
Q 003153 87 QNPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGK 149 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~ 149 (843)
.||+|||+|.|.+.... ..|.|+|||.+.++ +++||++.|++.++..+...+.||+|.++.+.
T Consensus 72 ~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 72 VNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp SSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred CCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence 99999999999987643 35999999999987 79999999999999888888899999876544
No 24
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.61 E-value=2e-15 Score=143.50 Aligned_cols=105 Identities=26% Similarity=0.417 Sum_probs=91.5
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC----CEEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG----GATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~----~~~~~rT~vi~~~ 86 (843)
-.|.|.|+|++|++|++++..+. +||||+|.+. +....+|++++++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~~kT~~~~~t 63 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNESKQKTKTIRST 63 (137)
T ss_dssp ETTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEECCTTCCCCEECCCCCSC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCC------------------------------CCeeEEEEEEcCCCCCeeecCceEcCC
Confidence 47999999999999999887654 8999999994 3456799999999
Q ss_pred CCCeeeeeEEEeecCC--CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 87 QNPIWNEHFKIPLAHP--VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~--~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++..+. .++||+|.+.
T Consensus 64 ~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 64 LNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp SSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 9999999999998653 246999999999887 899999999999998765 7899999765
No 25
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.61 E-value=5.3e-15 Score=158.61 Aligned_cols=124 Identities=26% Similarity=0.448 Sum_probs=107.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~nP 89 (843)
.|.|.|+|++|++|+++|..+. +||||+|.+.+ ....+|++++++.||
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~T~~~~~~~nP 67 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLNP 67 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSS------------------------------CCEEEEEEEETCTTSCEECCCCCSCSSC
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCeEEEEEEEcCCCceEeCCcccCCCCC
Confidence 5899999999999999887654 89999999964 346799999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEe
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLP 165 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~ 165 (843)
.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..+...+.|++|....+......|+|.+.++|.+
T Consensus 68 ~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p 147 (284)
T 2r83_A 68 VFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147 (284)
T ss_dssp EEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred eeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecC
Confidence 9999999998653 357999999999987 899999999999999888899999998765433345799999999876
No 26
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=149.84 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=90.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC---E--EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG---A--TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~---~--~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|+++|..+. +||||++.+.+ . .+.||++++++
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~------------------------------sDPyVkv~l~~~~~~~~~~~kT~v~~~t 91 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQD------------------------------QKVNIRVAVLPCSESTTCLFRTRPLDAS 91 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCC------------------------------SEEEEEEEEESCSCHHHHEEECCCEECC
T ss_pred CCEEEEEEEEccCcCCcccCCC------------------------------CCEEEEEEEecCCCCCccceeCCcCCCC
Confidence 5899999999999999886654 89999999975 2 36799999999
Q ss_pred CCCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccc-cCCceeeEEEcc
Q 003153 87 QNPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIK-SGESISDWFPIL 144 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~-~g~~~~~w~~L~ 144 (843)
.||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.|++.++. .+....+||+|+
T Consensus 92 lnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 92 DTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp SSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999998653 346999999999987 799999999999996 467788999985
No 27
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=6.8e-16 Score=147.81 Aligned_cols=107 Identities=28% Similarity=0.428 Sum_probs=92.7
Q ss_pred EEeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE-------------E
Q 003153 10 YLHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA-------------T 76 (843)
Q Consensus 10 ~l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~-------------~ 76 (843)
+..|.|.|+|++|++|+++|..+. +||||+|.+.+. .
T Consensus 15 y~~~~L~V~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~~~~~~~~~~~~~~ 64 (142)
T 1rh8_A 15 YDLGNLIIHILQARNLVPRDNNGY------------------------------SDPFVKVYLLPGRGQVMVVQNASAEY 64 (142)
T ss_dssp EETTEEEEEEEEEESCCCCSSSSC------------------------------SCCEEEEEETTSSCCCEECCCCCHHH
T ss_pred EcCCEEEEEEEEecCCCCCCCCCC------------------------------CCceEEEEEecCCCcccccccccccc
Confidence 347899999999999999886654 899999999863 2
Q ss_pred EEEeeeccCCCCCeeeeeEEEe-ecC---CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 77 VARTRVISNCQNPIWNEHFKIP-LAH---PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 77 ~~rT~vi~~~~nP~WnE~f~~~-v~~---~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
..||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||.+.|++.++..+...+.||+|.+.
T Consensus 65 ~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred eeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 4699999999999999999997 542 3457999999999987 79999999999999888888999999754
No 28
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.59 E-value=3.3e-15 Score=140.47 Aligned_cols=102 Identities=20% Similarity=0.369 Sum_probs=84.1
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC----CEEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG----GATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~----~~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|++++..+. +||||+|.+. +..+.||++++++.
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~ 66 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP------------------------------RNPYVKIYFLPDRSDKNKRRTKTVKKTL 66 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------BCEEEEEEEESSCSGGGEEECCCCSSBS
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCCEEEEEEecCCCCCcceecccccCCC
Confidence 4889999999999999886654 8999999993 34677999999999
Q ss_pred CCeeeeeEEEeecC----CCceEEEEEEeCCCCC---CcceeEEEecccccccCCceeeEEEcc
Q 003153 88 NPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG---ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 88 nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~---~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
||+|||+|.|.+.+ ....|.|+|||++.++ +++||.+.+++.++.... .++||+|.
T Consensus 67 nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 67 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp SCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred CCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 99999999999633 2357999999999886 799999999999987654 78999983
No 29
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=7.5e-15 Score=140.01 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=87.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC---CEEEEEeeeccCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG---GATVARTRVISNCQN 88 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~---~~~~~rT~vi~~~~n 88 (843)
.+.|.|+|++|+ ++|..+. +||||+|.+. +....||++++++.|
T Consensus 25 ~~~L~V~v~~a~---~~d~~g~------------------------------sDPyv~v~l~~~~~~~~~kT~v~~~tln 71 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNHDGG------------------------------CDCYVQGSVANRTGSVEAQTALKKRQLH 71 (138)
T ss_dssp TTEEEEEEEEEE---CCCCSSC------------------------------CCEEEEEEEEETTEEEEEECCCCCCCSS
T ss_pred CCEEEEEEEEEE---cCCCCCC------------------------------cceEEEEEEEcCCCcccEecccCcCCCC
Confidence 589999999999 3555443 8999999994 345679999999999
Q ss_pred CeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 89 PIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 89 P~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
|+|||+|.|.+... ...|.|+|||.|.++ +++||.+.|++.++..+...+.|++|...
T Consensus 72 P~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 72 TTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp EECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 99999999998653 346999999999987 89999999999999877788999999754
No 30
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=3.4e-15 Score=142.62 Aligned_cols=106 Identities=19% Similarity=0.338 Sum_probs=90.0
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC----CEEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG----GATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~----~~~~~rT~vi~~~~ 87 (843)
.+.|.|+|++|++|++++..+. +||||+|.+. +..+.||++++++.
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~ 69 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------RNPYVKIYFLPDRSDKNKRRTKTVKKTL 69 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------CCEEEECCCSSCCSSSSCCBCCCCSSCS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------CCCEEEEEEecCCCCCcceeCccccCCC
Confidence 5889999999999999887654 8999999984 24567999999999
Q ss_pred CCeeeeeEEEeecC----CCceEEEEEEeCCCCC---CcceeEEEecccccccCCceeeEEEcccCCC
Q 003153 88 NPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG---ADLIGVATIPAARIKSGESISDWFPILGLYG 148 (843)
Q Consensus 88 nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~---~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~ 148 (843)
||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.|++.++.... .+.||+|.+...
T Consensus 70 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~ 136 (141)
T 1v27_A 70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDS 136 (141)
T ss_dssp SCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred CCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccccc
Confidence 99999999999532 2357999999999886 799999999999987654 789999987643
No 31
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.58 E-value=8e-15 Score=142.38 Aligned_cols=106 Identities=25% Similarity=0.451 Sum_probs=90.2
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
-.|.|.|+|++|++|+.++ .+. +||||+|.+.+ ....+|++++++
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t 73 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-PGT------------------------------CDPYVKISLIPEDSRLRHQKTQTVPDC 73 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-SSC------------------------------CCEEEEEEEESCSCCTTCEECCCCTTC
T ss_pred CCCEEEEEEEEeeCCCCCC-CCC------------------------------CCEEEEEEEEcCCCCccEEeccccCCC
Confidence 3699999999999999887 343 89999999943 246799999999
Q ss_pred CCCeeeeeEEEee--cCCCceEEEEEEeCCCCC--CcceeEEEeccccccc-CCceeeEEEcccCC
Q 003153 87 QNPIWNEHFKIPL--AHPVSQIEFYVKDNDVFG--ADLIGVATIPAARIKS-GESISDWFPILGLY 147 (843)
Q Consensus 87 ~nP~WnE~f~~~v--~~~~~~l~~~V~d~d~~~--~~~IG~~~ipl~~l~~-g~~~~~w~~L~~~~ 147 (843)
.||+|||+|.|.+ ......|.|+|||.+.++ +++||.+.|++.++.. +...+.||+|.+..
T Consensus 74 ~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 74 RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp SSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred CCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 9999999999998 344456999999999874 7999999999999985 78889999997653
No 32
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.57 E-value=6.9e-15 Score=140.83 Aligned_cols=103 Identities=26% Similarity=0.456 Sum_probs=90.2
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|++++..+. +||||+|.+.+ ....||++++++.
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~ 77 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGL------------------------------ADPYVKLHLLPGASKSNKLRTKTLRNTR 77 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSC------------------------------CCEEEEEEEESCCSGGGEEECCCCCSCS
T ss_pred CCEEEEEEEEecCCCCCCCCCC------------------------------CCCEEEEEEEcCCCCcceeeCCcCCCCC
Confidence 5899999999999999886554 89999999975 3677999999999
Q ss_pred CCeeeeeEEEe-ecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcc
Q 003153 88 NPIWNEHFKIP-LAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 88 nP~WnE~f~~~-v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
||+|||+|.|. +... ...|.|+|||++.++ +++||.+.|++.++..+.....|++|.
T Consensus 78 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 78 NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp SCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred CCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 99999999998 5432 257999999999987 799999999999999888888899885
No 33
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.9e-15 Score=141.29 Aligned_cols=106 Identities=22% Similarity=0.367 Sum_probs=89.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|++++..+ +||||+|.+.+ ....||++++++.
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 71 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------SDPYVRMYLLPDKRRSGRRKTHVSKKTL 71 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------CCEEEEEEEESCCCSSSCEECCCCCSCS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------CCeeEEEEEEcCCCCCCcccCCccCCCC
Confidence 588999999999999877432 79999999953 2567999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC---CcceeEEEecccccccCCceeeEEEcccCCC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG---ADLIGVATIPAARIKSGESISDWFPILGLYG 148 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~---~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~ 148 (843)
||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++..+...+.|++|.+..+
T Consensus 72 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 72 NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp SCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred CCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 999999999998642 347999999999875 3699999999999988778889999976644
No 34
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.55 E-value=1.4e-14 Score=137.72 Aligned_cols=107 Identities=27% Similarity=0.393 Sum_probs=88.8
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+.++..+. +||||++.+.+ ....+|++++++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~ 64 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGT------------------------------SDPYVKVWLMYKDKRVEKKKTVTKKRNL 64 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTB------------------------------CCEEEEEEEEETTEEEEEEECCCCSSCS
T ss_pred CCeEEEEEEEeeCCCCcCCCCC------------------------------cCeEEEEEEEeCCCccceEeCccccCCC
Confidence 4899999999999999887554 89999999974 2567999999999
Q ss_pred CCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||+|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|++.++. ...++|++|+...+++
T Consensus 65 nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~~~ 129 (138)
T 3n5a_A 65 NPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPRQP 129 (138)
T ss_dssp SCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTTCC
T ss_pred CCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCCCe
Confidence 9999999999987644 46999999999987 899999999998754 3345677776655543
No 35
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.55 E-value=1.7e-14 Score=141.00 Aligned_cols=104 Identities=30% Similarity=0.438 Sum_probs=87.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|++++..+. +||||+|.+.+ ....||++++++.
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 73 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKNTL 73 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCeEEEEEEEeCCceeceeeCceecCCC
Confidence 5899999999999999886554 89999999963 2567999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEeccccc----------c--cCCceeeEEEccc
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARI----------K--SGESISDWFPILG 145 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l----------~--~g~~~~~w~~L~~ 145 (843)
||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++..+ . .+..+++|++|..
T Consensus 74 nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 74 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 999999999998654 346999999999987 89999999999853 2 2556788888864
No 36
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.55 E-value=1.9e-14 Score=141.65 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=85.2
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|++++..+. +||||+|.+.+ ..+.||++++++.
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~ 85 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGY------------------------------SDPFVKLWLKPDMGKKAKHKTQIKKKTL 85 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEETC---CCEEECCCCCSCS
T ss_pred CCEEEEEEEEeECCCCccCCCC------------------------------CCcEEEEEEECCCCccceEeCCcccCCC
Confidence 5899999999999999886554 89999999976 3577999999999
Q ss_pred CCeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 88 NPIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 88 nP~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++.. ..+.|++|.+.
T Consensus 86 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~ 146 (166)
T 2cm5_A 86 NPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYECLKN 146 (166)
T ss_dssp SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHHHHC
T ss_pred CCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCc--hhHHHHHHHhC
Confidence 999999999999653 347999999999987 7999999999988632 33345555443
No 37
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.55 E-value=2.1e-14 Score=136.81 Aligned_cols=105 Identities=28% Similarity=0.404 Sum_probs=88.3
Q ss_pred eeEEEEEEEEeeCCCCCCCc-hhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLV-TARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQN 88 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~n 88 (843)
.+.|.|+|++|++|++++.. +. +||||+|.+.+ ....||++++++.|
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~n 70 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMT------------------------------SDPYIKMTILPEKKHKVKTRVLRKTLD 70 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTB------------------------------CEEEEEEEEETTTCSEEECCCCSSCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCC------------------------------CCCEEEEEEecCCCceEecCcCcCCCC
Confidence 58899999999999998864 43 89999999963 46789999999999
Q ss_pred CeeeeeEEEe-ecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCc-eeeEEEcccC
Q 003153 89 PIWNEHFKIP-LAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES-ISDWFPILGL 146 (843)
Q Consensus 89 P~WnE~f~~~-v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~-~~~w~~L~~~ 146 (843)
|+|||+|.|. +... ...|.|+|||++.++ +++||.+.|++.++..+.. ...|++|...
T Consensus 71 P~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 71 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp CEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 9999999996 6542 347999999999987 7999999999999987544 4567998643
No 38
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.55 E-value=5.4e-15 Score=143.48 Aligned_cols=106 Identities=27% Similarity=0.424 Sum_probs=83.4
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEE--CCEE--EEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCL--GGAT--VARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l--~~~~--~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+.++..+. +||||+|.+ .+.. ..||++++++.
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~ 78 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGL------------------------------SDPYVKVNLYHAKKRISKKKTHVKKCTP 78 (153)
T ss_dssp TTEEEEEEEEEESCC------C------------------------------CCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred CCEEEEEEEEeECCCCcCCCCC------------------------------CCeEEEEEEEeCCeEeceEecCcccCCC
Confidence 5899999999999998886654 899999999 4432 66999999999
Q ss_pred CCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCC
Q 003153 88 NPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGK 149 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~ 149 (843)
||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++.+ .+...+.|++|....++
T Consensus 79 nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~ 142 (153)
T 1w15_A 79 NAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRR 142 (153)
T ss_dssp SEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTC
T ss_pred CCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCC
Confidence 9999999999987643 46999999999987 8999999999988 34455667777655444
No 39
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.54 E-value=3.2e-14 Score=138.20 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccccccc
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFFINTA 304 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~~~~~ 304 (843)
...++.+.++|.+|+++|+|+.+.|. ...|.++|.++++|||+|+||+ |.......
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~-----------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------ 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFT-----------------APDIMKALVAAKKRGVDVKIVI-DERGNTGR------ 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBC-----------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeC-----------------CHHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence 35789999999999999999987662 1479999999999999999998 54422110
Q ss_pred cccCCChHHHHhhhcCCCcEEEeCCCCCCCccchhhcccccccccCccceEEeccCCCCCCcceEEEeccccCCCcccCC
Q 003153 305 GVMQTHDEETRKFFKHSSVHCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDT 384 (843)
Q Consensus 305 ~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~dl~~~R~Dt 384 (843)
......+.|.+.|++++..... ..+|.|++|||++ ++++||.|++...+
T Consensus 69 -----~~~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 69 -----ASIAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp -----HHHHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred -----ccHHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 0123455677789998764321 2489999999998 99999999987211
Q ss_pred CCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeCh--HHHHHHHHHHHHHhhhc
Q 003153 385 PEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGP--AAYDVLTNFEQRWRKAT 444 (843)
Q Consensus 385 ~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~~ 444 (843)
..|++..+.++|+ .+.++...|.+.|+.+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467899999994 78999999999998754
No 40
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=140.28 Aligned_cols=111 Identities=24% Similarity=0.431 Sum_probs=89.8
Q ss_pred eeEEEEEEEEeeCCCCC-CCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCCCC
Q 003153 12 HGDLDLKIVEARRLPNM-DLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNCQN 88 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~~n 88 (843)
.|.|.|+|++|++|+++ +..+. ....+.+||||+|.+.+ ..+.||++++++.|
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~------------------------~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~n 80 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS------------------------RQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQK 80 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS------------------------SCTTCCCCCEEEEEEETCCSSCEECCCCCSCSS
T ss_pred CCEEEEEEEEEeCCCCccccccc------------------------cccCCCCCcEEEEEEEeCCCcceEeecccCCCC
Confidence 58999999999999983 43320 00112389999999974 35679999999999
Q ss_pred CeeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 89 PIWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 89 P~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
|+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++..+.....|++|...
T Consensus 81 P~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 81 PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp CCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred CeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 99999999998652 347999999999987 78999999999999877777889999643
No 41
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.50 E-value=1.1e-13 Score=129.39 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=102.1
Q ss_pred EEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeecc-CCCCCeee
Q 003153 14 DLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVIS-NCQNPIWN 92 (843)
Q Consensus 14 ~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~-~~~nP~Wn 92 (843)
-|+|+|.+|.+||. . +|||+++.+-+ ...+|++++ ++.||+||
T Consensus 22 sL~V~l~~a~~Lpg-----~------------------------------~Dp~akv~FRg-~k~kTkvi~~~~~npvfn 65 (144)
T 3l9b_A 22 ALIVHLKTVSELRG-----R------------------------------ADRIAKVTFRG-QSFYSRVLENCEDVADFD 65 (144)
T ss_dssp EEEEEEEEEESCCS-----C------------------------------EEEEEEEEETT-EEEECCCEEEECSCEEEE
T ss_pred EEEEEEEEecCCCC-----C------------------------------CCCeEEEEEec-cceeeEEeccCCCCceEc
Confidence 58999999999993 2 89999999987 455999998 69999999
Q ss_pred eeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEEEecc
Q 003153 93 EHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRFLPCE 167 (843)
Q Consensus 93 E~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~ 167 (843)
|.|.+++..+ ...|.|.|+|++.++ +.+||++.++|+++..+.....+-+|.+.++++. .+.|.+.++|.|-.
T Consensus 66 E~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~--~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 66 ETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAII--KTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred ceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCcc--ccEEEEEEEecCCC
Confidence 9999999763 346999999999887 8999999999999999888888999999998874 58999999999843
No 42
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.48 E-value=1.8e-13 Score=147.74 Aligned_cols=123 Identities=28% Similarity=0.391 Sum_probs=99.9
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CEEEEEeeeccCCCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GATVARTRVISNCQNP 89 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~~~~rT~vi~~~~nP 89 (843)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dPyv~v~l~~~~~~~~kT~v~~~t~nP 68 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGF------------------------------SDPYVKIYLLPDRKKKFQTKVHRKTLNP 68 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSC------------------------------CCEEEEEECTTSTTSCEECCCCCSCSSC
T ss_pred CCEEEEEEEEeECCCCcCCCCC------------------------------cCeEEEEEEEcCCCeeEeCCccCCCCCC
Confidence 5899999999999999887654 8999999993 3456799999999999
Q ss_pred eeeeeEEEeecCC---CceEEEEEEeCCCCC-CcceeEEEec-cccccc-CCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 90 IWNEHFKIPLAHP---VSQIEFYVKDNDVFG-ADLIGVATIP-AARIKS-GESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 90 ~WnE~f~~~v~~~---~~~l~~~V~d~d~~~-~~~IG~~~ip-l~~l~~-g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
+|||+|.|.+... ...|.|+|||.|.++ +++||.+.++ +.++.. +...+.|++|....++. ...|+|.+.+.|
T Consensus 69 ~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~vsl~y 147 (296)
T 1dqv_A 69 IFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK-ADLGELNFSLCY 147 (296)
T ss_dssp EEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCC-SCCCEEEEEEEE
T ss_pred cEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccc-cccceEEEEEEe
Confidence 9999999998643 346999999999987 8999999996 444443 44567899997654332 457999999988
Q ss_pred Ee
Q 003153 164 LP 165 (843)
Q Consensus 164 ~~ 165 (843)
.+
T Consensus 148 ~~ 149 (296)
T 1dqv_A 148 LP 149 (296)
T ss_dssp ET
T ss_pred cc
Confidence 65
No 43
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.47 E-value=1.9e-13 Score=129.04 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=71.0
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeecc-CCCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVIS-NCQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~-~~~nP~W 91 (843)
|.|.|+|++|++|+. .+. +||||+|.. ...+|+++. ++.||.|
T Consensus 5 ~~L~V~V~~A~~l~~---~g~------------------------------~DPYv~v~~---~~~kt~~~~~~t~nP~W 48 (131)
T 2cjt_A 5 SLLCVGVKKAKFDGA---QEK------------------------------FNTYVTLKV---QNVKSTTIAVRGSQPSW 48 (131)
T ss_dssp EEEEEEEEEEECSSC---GGG------------------------------CEEEEEEEE---TTEEEECCCEESSSCEE
T ss_pred eEEEEEEEEeECCCC---CCC------------------------------cCeEEEEEe---cCEEEeEecCCCCCceE
Confidence 889999999998852 232 899999992 223666665 5999999
Q ss_pred eeeEEEeecCCCceEEEEEEeCCCCC-CcceeEEEecccccccC
Q 003153 92 NEHFKIPLAHPVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSG 134 (843)
Q Consensus 92 nE~f~~~v~~~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g 134 (843)
||+|.|.+......|.|+|||+| ++ +++||++.||+.++...
T Consensus 49 nE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 49 EQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBC
T ss_pred CCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhc
Confidence 99999999877778999999999 65 89999999999998653
No 44
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.47 E-value=1.1e-13 Score=142.81 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred ccchhhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCcccccccc
Q 003153 221 QYKHERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWDDKTSHSKFF 300 (843)
Q Consensus 221 ~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd~~~s~~~~~ 300 (843)
.|.+.+.++.|+++|++|+++|+|+.|.|.. ..|.++|.+||+|||+||||+ |...+...
T Consensus 53 ~~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~-- 112 (220)
T 4gel_A 53 THCSLRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK-- 112 (220)
T ss_dssp TTCHHHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST--
T ss_pred ccCcHHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh--
Confidence 3445788999999999999999999887632 589999999999999999997 87543221
Q ss_pred cccccccCCChHHHHhhhcCCCcEEEeCCCCC--CCccchhhc--ccccccccCccceEEeccCCCCCCcceEEEecccc
Q 003153 301 INTAGVMQTHDEETRKFFKHSSVHCVLSPRYA--SSKLSIFKQ--QVVGTLFTHHQKCVIVDTQASGNNRKITAFIGGLD 376 (843)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~v~v~~~~~~~--~~~~~~~~~--~~~~~~~shHqK~vVVD~~~~~~~~~~vafvGG~d 376 (843)
......+...++.+....... ..+.-++.. .......++|.|++|+|++ ++++||.|
T Consensus 113 -----------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N 173 (220)
T 4gel_A 113 -----------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVN 173 (220)
T ss_dssp -----------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCC
T ss_pred -----------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcc
Confidence 011222333445444321110 000000000 0112234678888888887 99999999
Q ss_pred CCCcccCCCCCCccCCCCccccCCCCCCcccCCCCCCCCCceeeeeeeeChHHHHHHHHHHHHHhhhcc
Q 003153 377 LCDGRYDTPEHRLFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATK 445 (843)
Q Consensus 377 l~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~~r~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~ 445 (843)
++..-. ...|.|+.+...|++|..+.+.|.+.|+....
T Consensus 174 ~t~~s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 174 WTALGL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp BSHHHH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred cccccc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 887221 13577888888999999999999999997544
No 45
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.43 E-value=4.7e-13 Score=129.86 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSAS 615 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~ 615 (843)
.++.++++++|++|+++|+|+++||.. ..+..+|.+|.++ |++|+|+++..+. ..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~r--GV~Vril~~~~~~----~~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKKR--GVDVKIVIDERGN----TG- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHHT--TCEEEEEEESTTC----CS-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHHC--CCEEEEEEeCccc----cc-
Confidence 468889999999999999999999841 2566677777655 5999999996432 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEee
Q 003153 616 VQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHA 695 (843)
Q Consensus 616 ~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHs 695 (843)
+..+ ...+.|.+.|+++ .++. + ...+|+
T Consensus 68 ------~~~~-------~~~~~L~~~gv~v-------~~~~-------------~-------------------~~~~H~ 95 (155)
T 1byr_A 68 ------RASI-------AAMNYIANSGIPL-------RTDS-------------N-------------------FPIQHD 95 (155)
T ss_dssp ------HHHH-------HHHHHHHHTTCCE-------EEEC-------------S-------------------SSCCCC
T ss_pred ------cccH-------HHHHHHHHCCCeE-------EEcC-------------C-------------------cccccc
Confidence 1111 2256677888764 2221 0 014899
Q ss_pred eEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecC-CcccCCCCCCCCchHHHHHHHHHHH
Q 003153 696 KGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQP-HHTWGKKKEHPHGQVYGYRMSLWAE 757 (843)
Q Consensus 696 KlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~-~~~~~~~~~~~~~~~~~lR~~Lw~e 757 (843)
|+|||||+++++||+||+.||+..+ .|+++.+.++ +.+ .+....-.++|..
T Consensus 96 K~~iiD~~~~~iGS~N~~~~~~~~n--~E~~~~i~~~~~l~---------~~~~~~f~~~w~~ 147 (155)
T 1byr_A 96 KVIIVDNVTVETGSFNFTKAAETKN--SENAVVIWNMPKLA---------ESFLEHWQDRWNQ 147 (155)
T ss_dssp CEEEETTTEEEEESCCBSHHHHHTS--CEEEEEEESCHHHH---------HHHHHHHHHHHHT
T ss_pred eEEEECCCEEEEECCCCCccccccC--cccEEEEcCcHHHH---------HHHHHHHHHHHHh
Confidence 9999999999999999999999744 9999999873 332 2344555667754
No 46
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.42 E-value=5.5e-13 Score=157.23 Aligned_cols=122 Identities=27% Similarity=0.459 Sum_probs=102.2
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
..++|.|+|++|++|+.++... .+.+||||+|.+.+ ....||++++++
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~----------------------------~~~~DPYV~V~l~g~~~d~~~~kTkvi~~n 546 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNK----------------------------NSIVDPKVIVEIHGVGRDTGSRQTAVITNN 546 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCS----------------------------SSCCCEEEEEEEESSGGGCEEEECCCCTTC
T ss_pred cceEEEEEEEEcCCCCcccccc----------------------------cCCCCcEEEEEEecCCCCcceeecccccCC
Confidence 3589999999999999876310 01289999999965 256799999997
Q ss_pred -CCCeeeeeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEEE
Q 003153 87 -QNPIWNEHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMRF 163 (843)
Q Consensus 87 -~nP~WnE~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~~ 163 (843)
.||+|||+|.|.+..+. ..|.|+|||+|.++ +++||++.||+..|..|. .|++|.+..|++. ..+.|.|+++|
T Consensus 547 g~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~ 622 (624)
T 1djx_A 547 GFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISI 622 (624)
T ss_dssp SSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred CCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEE
Confidence 99999999999997654 46999999999986 899999999999998775 4999999888864 46889999887
Q ss_pred E
Q 003153 164 L 164 (843)
Q Consensus 164 ~ 164 (843)
.
T Consensus 623 ~ 623 (624)
T 1djx_A 623 Q 623 (624)
T ss_dssp E
T ss_pred E
Confidence 5
No 47
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.42 E-value=1.9e-13 Score=138.26 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSAS 615 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~ 615 (843)
.+....++++|++||++|+|+..+|.. .+++.+|.+|.++ ||+|+||+...-....
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~------------------~~i~~aL~~aa~r--GV~Vrii~D~~~~~~~---- 100 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS------------------PQLGRAVQLLHQR--GVRVRVITDCDYMALN---- 100 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC------------------HHHHHHHHHHHHT--TCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC------------------HHHHHHHHHHHHc--CCcEEEEEeccccccc----
Confidence 345678999999999999999855541 3677778887655 4999999974211000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEee
Q 003153 616 VQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHA 695 (843)
Q Consensus 616 ~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHs 695 (843)
. .....|.++|+++ .++ .+ ..++|+
T Consensus 101 --------~--------~~~~~l~~~gi~v-------~~~-------------~~-------------------~~~~H~ 125 (196)
T 4ggj_A 101 --------G--------SQIGLLRKAGIQV-------RHD-------------QD-------------------LGYMHH 125 (196)
T ss_dssp --------C--------CHHHHHHHTTCEE-------EEC-------------CS-------------------SSCCCC
T ss_pred --------H--------HHHHHHHhcCCCc-------ccc-------------cc-------------------cccccC
Confidence 0 1134677888864 111 10 014799
Q ss_pred eEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHHh
Q 003153 696 KGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAEH 758 (843)
Q Consensus 696 KlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eh 758 (843)
|+||||++++++||+||+.+|+..| .|..+++.|++.+ .+....-.++|.+.
T Consensus 126 K~~viD~~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~~---------~~~~~~F~~~W~~~ 177 (196)
T 4ggj_A 126 KFAIVDKKVLITGSLNWTTQAIQNN--RENVLIMEDTEYV---------RLFLEEFERIWEEF 177 (196)
T ss_dssp EEEEETTTEEEEESCCBCHHHHHHC--CEEEEEECCHHHH---------HHHHHHHHHHHHHT
T ss_pred cEEEEcceEEEecCccCChhhhccc--ceeEEEEECHHHH---------HHHHHHHHHHHHhC
Confidence 9999999999999999999999855 8999999876443 13345566788754
No 48
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.41 E-value=8.5e-13 Score=153.30 Aligned_cols=116 Identities=22% Similarity=0.422 Sum_probs=99.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCee
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIW 91 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~W 91 (843)
.|+|.|+|++|++|+++|..+. +||||+|.+++ .+++|++++++.||.|
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~------------------------------sdpyv~v~~~~-~~~~T~~~~~t~nP~w 434 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK------------------------------SNPYCEISMGS-QSYTTRTIQDTLNPKW 434 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEETT-EEEECCCCSSCSSCEE
T ss_pred CceEEEEeceeecCCCCCCCCC------------------------------CCeEEEEEECC-eeccCCccCCCCCCcc
Confidence 4899999999999999887664 89999999987 5679999999999999
Q ss_pred eeeEEEeecCCC-ceEEEEEEeCCCCC-CcceeEEEecccccccCCc----eeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 92 NEHFKIPLAHPV-SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGES----ISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 92 nE~f~~~v~~~~-~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~----~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
||+|.|.+.... ..|.|+|||.|.++ +++||.+.+++.++..+.. ...|+++.+. ..|+|+|++.+.
T Consensus 435 ~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 435 NFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp EEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred CceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 999999997654 46999999999987 8999999999999987554 7789998643 368888877654
No 49
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.39 E-value=2e-12 Score=149.22 Aligned_cols=105 Identities=26% Similarity=0.292 Sum_probs=90.0
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCCCCCeee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNCQNPIWN 92 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~~nP~Wn 92 (843)
|.|.|+|++|++|+. |.++. +||||+|.+.+.. .||++++++.||+||
T Consensus 394 ~~L~V~V~~A~~L~~-D~~g~------------------------------sDPYV~v~l~~~~-~kTkvik~tlNP~Wn 441 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWG-DYTTA------------------------------TDAYLKVFFGGQE-FRTGVVWNNNNPRWT 441 (540)
T ss_dssp EEEEEEEEEEESCCC-SSCSC------------------------------CCEEEEEEETTEE-EECCCBCSCSSCBCC
T ss_pred cEEEEEEEEccCCCc-ccCCC------------------------------cCeEEEEEECCEe-eeeeeecCCCCCCCC
Confidence 799999999999998 87665 8999999999854 899999999999999
Q ss_pred eeEEEeecC--CCceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEE
Q 003153 93 EHFKIPLAH--PVSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMR 162 (843)
Q Consensus 93 E~f~~~v~~--~~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~ 162 (843)
|.|.|.+.. ....|.|+|||+|.++ +++||.+.+++. .| ..+.|++|. .|.|+++++
T Consensus 442 e~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l~---------~G~l~~~~~ 501 (540)
T 3nsj_A 442 DKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCELN---------HGRVKFSYH 501 (540)
T ss_dssp CCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEECS---------SSEEEEEEE
T ss_pred eEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEcC---------CeEEEEEEE
Confidence 999998643 4567999999999987 699999999987 34 467899872 478888766
No 50
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.38 E-value=4.4e-14 Score=162.39 Aligned_cols=125 Identities=26% Similarity=0.431 Sum_probs=24.2
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeeccCC---C
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVISNC---Q 87 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~~~---~ 87 (843)
..|.|+|+|++|++|+++ .||||++.+++...+||++++++ .
T Consensus 9 ~~~~L~V~VieAk~L~~~-----------------------------------ddpYv~v~l~~~~~~kT~v~~kt~~gl 53 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPK-----------------------------------KRYYCELCLDDMLYARTTSKPRSASGD 53 (483)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred eccEEEEEEEEcCCcCCC-----------------------------------CCCeEEEEECCeEEeeeeEEeCCCCCC
Confidence 468999999999999864 38999999998777899999999 9
Q ss_pred CCeeeeeEEEeecCCCceEEEEEEeC-CC---C-CCcceeEEEecccccccCCceeeEEEcccCCC--------------
Q 003153 88 NPIWNEHFKIPLAHPVSQIEFYVKDN-DV---F-GADLIGVATIPAARIKSGESISDWFPILGLYG-------------- 148 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~~~l~~~V~d~-d~---~-~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~-------------- 148 (843)
||.|||+|.|.+.+....|.|+|||+ |. . ++++||.+.||++++..|...+.||+|.+..+
T Consensus 54 nP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~ 133 (483)
T 3bxj_A 54 TVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGG 133 (483)
T ss_dssp -----CCEECC------------------------------------------CCEECC---------------------
T ss_pred CCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCcccccccccccccc
Confidence 99999999999766567899999994 42 3 48999999999999999888999999965432
Q ss_pred -------CCCCCcceEEEEEEEEeccCCC
Q 003153 149 -------KPPKSETAVFMEMRFLPCEENP 170 (843)
Q Consensus 149 -------~~~~~~g~l~l~l~~~~~~~~~ 170 (843)
+..+..|.|+++++|.+....|
T Consensus 134 ~~~~~~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 134 SGGGSGGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp -----------------CEEEEEECCBCC
T ss_pred ccccccccCCCCCceEEEEEEeeeeeecc
Confidence 1113468899999998865433
No 51
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.38 E-value=2.5e-12 Score=126.43 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=71.2
Q ss_pred eEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCEEEEEeeecc-CCCCCee
Q 003153 13 GDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGATVARTRVIS-NCQNPIW 91 (843)
Q Consensus 13 G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~~~~rT~vi~-~~~nP~W 91 (843)
|.|.|+|++|++|+. .+. +||||+|.. ...||+++. ++.||+|
T Consensus 14 ~~L~V~V~~A~~l~~---~g~------------------------------~DPYV~v~~---~~~kt~~~~~~t~nP~W 57 (167)
T 2cjs_A 14 SLLCVGVKKAKFDGA---QEK------------------------------FNTYVTLKV---QNVESTTIAVRGSQPSW 57 (167)
T ss_dssp CEEEEEEEEEECSSC---GGG------------------------------CEEEEEEEE---TTEEEECCCEESSSCEE
T ss_pred EEEEEEEEEEECCCC---CCC------------------------------CCeEEEEEe---cceEEEEecCCCCCCCC
Confidence 789999999998852 332 899999992 234777776 5999999
Q ss_pred eeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEeccccccc
Q 003153 92 NEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIKS 133 (843)
Q Consensus 92 nE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~ 133 (843)
||+|.|.+......|.|+|||+|..++++||++.||++++..
T Consensus 58 nE~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 58 EQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp EEEEEEECCCTTSEEEEEEEECCSSCCEEEEEEEEEGGGSCB
T ss_pred CCEEEEEeeCCCCEEEEEEEECCCCCCceEEEEEEEHHHhcc
Confidence 999999998877789999999993348999999999999865
No 52
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.32 E-value=5.3e-12 Score=135.13 Aligned_cols=104 Identities=31% Similarity=0.469 Sum_probs=86.6
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CE--EEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GA--TVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~--~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+++|..+. +||||+|.+. +. .+.||++++++.
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~ 198 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKNTL 198 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------cCeEEEEEEEeCCcEeeeeccceecCCC
Confidence 4789999999999999887654 8999999985 32 567999999999
Q ss_pred CCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccc------------cCCceeeEEEccc
Q 003153 88 NPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIK------------SGESISDWFPILG 145 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~------------~g~~~~~w~~L~~ 145 (843)
||.|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++..+. .+..+.+|++|.+
T Consensus 199 nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 199 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp SCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 9999999999987643 35999999999987 899999999997632 2456678888864
No 53
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.30 E-value=2.6e-12 Score=152.64 Aligned_cols=103 Identities=25% Similarity=0.428 Sum_probs=91.6
Q ss_pred eeEEEEEEEEeeCCCC---CCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC--EEEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPN---MDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG--ATVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~--~~~~rT~vi~~~ 86 (843)
.|.|.|+|++|++|++ +|..+. +||||+|.+.+ ..+.||++++++
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------sDPYV~V~l~~~~~~k~kTkvik~t 66 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------PDPYVELFISTTPDSRKRTRHFNND 66 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCC------------------------------CCEEEEEECTTSTTCCEECCCCTTC
T ss_pred ccEEEEEEEEEECCCCccccCCCCC------------------------------cCeEEEEEEecCCCCeEecceEcCC
Confidence 5899999999999997 654443 89999999985 356799999999
Q ss_pred CCCeeeeeEEEeecC-CCceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcc
Q 003153 87 QNPIWNEHFKIPLAH-PVSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPIL 144 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~-~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~ 144 (843)
.||+|||+|.|.+.. ....|.|+|||+|.+++++||++.|++.++..|...+.|++|.
T Consensus 67 lNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 67 INPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp SSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 999999999999976 3457999999999988999999999999999998889999995
No 54
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.23 E-value=2.8e-12 Score=138.37 Aligned_cols=108 Identities=31% Similarity=0.462 Sum_probs=87.0
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--C--EEEEEeeeccCCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--G--ATVARTRVISNCQ 87 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~--~~~~rT~vi~~~~ 87 (843)
.|.|.|+|++|++|+++|..+. +||||+|.+. + ..+.||++++++.
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~ 200 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------SDPYVKASLISEGRRLKKRKTSIKKNTL 200 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------CCEEEEECCCTTCCTTSCEECCCCCSCS
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------CCcEEEEEEEeCCcCccceecceecCCC
Confidence 4899999999999999887664 8999999996 3 2567999999999
Q ss_pred CCeeeeeEEEeecCCC---ceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccCCCCC
Q 003153 88 NPIWNEHFKIPLAHPV---SQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGLYGKP 150 (843)
Q Consensus 88 nP~WnE~f~~~v~~~~---~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~ 150 (843)
||.|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++..+.. ...++|++++...+++
T Consensus 201 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~ 266 (296)
T 1dqv_A 201 NPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKP 266 (296)
T ss_dssp SCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSC
T ss_pred CCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCc
Confidence 9999999999987642 36999999999987 8999999999987643 1234566655544443
No 55
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.07 E-value=3.8e-10 Score=135.51 Aligned_cols=116 Identities=23% Similarity=0.415 Sum_probs=95.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECCE------EEEEeeeccC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGGA------TVARTRVISN 85 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~~------~~~rT~vi~~ 85 (843)
.++|.|+|++|++|+.. . +||||+|.+.+. ...||+++++
T Consensus 649 ~~~L~V~Visaq~L~~~----~------------------------------~DPYV~V~l~g~p~d~~~~k~kTkvv~~ 694 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----Q------------------------------ISSYVEVEMYGLPTDTVRKKFKTKIIEN 694 (816)
T ss_dssp CEEEEEEEEEEECCCSS----C------------------------------CCEEEEEEEESSGGGCEEEEEECCCBCS
T ss_pred ceEEEEEEEEcccCCCC----C------------------------------CCCeEEEEEeCCCcccccceeeeEEecC
Confidence 47899999999999842 1 799999999761 4569999986
Q ss_pred -CCCCeeeee-EEEe-ecCCC-ceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEE
Q 003153 86 -CQNPIWNEH-FKIP-LAHPV-SQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEM 161 (843)
Q Consensus 86 -~~nP~WnE~-f~~~-v~~~~-~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l 161 (843)
+.||+|||+ |.|. +..+. ..|.|+|+|++ +++||++.|||+.|..|.. +++|.+..|++. ..+.|.|.+
T Consensus 695 nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~GyR---~vpL~~~~g~~~-~~atLfv~i 767 (816)
T 3qr0_A 695 NGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGYR---HVPLRNESNRPL-GLASVFAHI 767 (816)
T ss_dssp CSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEEE---EEEEECTTSCEE-EEEEEEEEE
T ss_pred CCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcce---EEEEeCCCCCCC-CceEEEEEE
Confidence 699999998 9998 65443 46899999985 7899999999999998854 899999988874 347888888
Q ss_pred EEEeccC
Q 003153 162 RFLPCEE 168 (843)
Q Consensus 162 ~~~~~~~ 168 (843)
.+.....
T Consensus 768 ~~~~~~~ 774 (816)
T 3qr0_A 768 VAKDYVS 774 (816)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 8776543
No 56
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.06 E-value=2.8e-10 Score=137.40 Aligned_cols=115 Identities=21% Similarity=0.373 Sum_probs=94.5
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-----EEEEEeeeccC-
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-----ATVARTRVISN- 85 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-----~~~~rT~vi~~- 85 (843)
..+|.|+|++|++|+.. . +||||+|.+.+ ..+.||+++.+
T Consensus 724 ~~~L~V~Visaq~L~~~----~------------------------------~DPYV~V~l~g~p~D~~~k~kTkvi~~N 769 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----K------------------------------VGIYVEVDMFGLPVDTRRKYRTRTSQGN 769 (885)
T ss_dssp CEEEEEEEEEEESCCSS----C------------------------------CCEEEEEEEESSTTTCBCCCCCCCCSSC
T ss_pred ceEEEEEEEEeccCccc----C------------------------------CCcEEEEEEeCCCcccccceeeEEeeCC
Confidence 45899999999999842 1 79999999975 23469999986
Q ss_pred CCCCeeee-eEEEe-ecCC-CceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEEE
Q 003153 86 CQNPIWNE-HFKIP-LAHP-VSQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEMR 162 (843)
Q Consensus 86 ~~nP~WnE-~f~~~-v~~~-~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l~ 162 (843)
+.||+||| +|.|. |..+ ...|.|+|||+| +++||++.|||..|..|.. +++|.+..|++. ..+.|.|.+.
T Consensus 770 glNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~GyR---~vpL~~~~g~~l-~~atLfv~i~ 842 (885)
T 3ohm_B 770 SFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSGYH---YVCLRNEANQPL-CLPALLIYTE 842 (885)
T ss_dssp SSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCEEE---EEEEECTTSCEE-EEEEEEEEEE
T ss_pred CcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCCce---EEEecCCCCCcc-CceEEEEEEE
Confidence 69999999 69998 6443 346999999987 7999999999999988755 799999988863 4688999998
Q ss_pred EEecc
Q 003153 163 FLPCE 167 (843)
Q Consensus 163 ~~~~~ 167 (843)
+....
T Consensus 843 ~~~~~ 847 (885)
T 3ohm_B 843 ASDYI 847 (885)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88654
No 57
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.06 E-value=3.3e-10 Score=116.50 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSAS 615 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~ 615 (843)
....+.++++|.+||+.|+|+..+|. ..+++.+|.+|.++| |+|+||+..........
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~------------------~~~I~~aL~~Aa~RG--V~VRii~D~~~~~~~~~-- 114 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFT------------------SLFLADSIKRALQRG--VIIRIISDGEMVYSKGS-- 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBC------------------CHHHHHHHHHHHHHT--CEEEEECCTTTTTSTTC--
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeC------------------CHHHHHHHHHHHHcC--CeEEEEEechhhhhhHH--
Confidence 34566789999999999999974443 136778888886666 99999997432111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEee
Q 003153 616 VQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVHA 695 (843)
Q Consensus 616 ~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHs 695 (843)
.+..+...++.. .++.. ..... .-+. .-.+..... +..-..|.
T Consensus 115 ------------------~~~~~~~~~~~~-------~~~~~--~~~~h-~K~~----viD~~~~~~-----~~~~~~H~ 157 (220)
T 4gel_A 115 ------------------QISMLAQLGVPV-------RVPIT--TNLMH-NKFC----IIDGFERVE-----EIRLLRKL 157 (220)
T ss_dssp ------------------HHHHHHHTTCCE-------EECCS--SSCBC-CCEE----EESCHHHHH-----HHHHHTTC
T ss_pred ------------------HHHHHHhcCCcE-------Eeecc--ccccc-ceeE----EEcchhccc-----ccccccce
Confidence 022344555432 11100 00000 0000 000000000 00113577
Q ss_pred eEEEEeeeEEEEcccCccCCCcCCCCCcceEEeeecCCcccCCCCCCCCchHHHHHHHHHHHh
Q 003153 696 KGMVVDDEYVILGSANINQRSLAGGRDTEIAMGAYQPHHTWGKKKEHPHGQVYGYRMSLWAEH 758 (843)
Q Consensus 696 KlmIVDD~~~iiGSANin~RSm~~~rDsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eh 758 (843)
|++|+|+.++++||+||+.+|+.+| .|..+++.++..+ .+....-.++|...
T Consensus 158 K~~v~D~~~v~~GS~N~t~~s~~~N--~E~~~vi~~~~~a---------~~~~~~F~~~W~~~ 209 (220)
T 4gel_A 158 KFMRPCYSIVISGSVNWTALGLGGN--WENCIITADDKLT---------ATFQAEFQRMWRAF 209 (220)
T ss_dssp SCCCCCCCEEEEESCCBSHHHHHTS--BEEEEEECCHHHH---------HHHHHHHHHHHHHS
T ss_pred eccccccceEEecCccccccccccC--ceEEEEEECHHHH---------HHHHHHHHHHHHhc
Confidence 7777778999999999999999866 8999998776433 12345556777653
No 58
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.05 E-value=4.3e-10 Score=135.82 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=91.7
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC-----EEEEEee-eccC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG-----ATVARTR-VISN 85 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~-----~~~~rT~-vi~~ 85 (843)
.|+|.|+|++|++|+.. . +||||+|.+.+ .++.||+ ++++
T Consensus 677 ~~~L~V~Visa~~L~~~----~------------------------------~DPYV~V~l~g~p~d~~~k~kTk~vv~~ 722 (799)
T 2zkm_X 677 ATTLSITVISGQFLSER----S------------------------------VRTYVEVELFGLPGDPKRRYRTKLSPST 722 (799)
T ss_dssp CEEEEEEEEEEESCCSS----C------------------------------CCEEEEEEEECCTTSCCCCEECCCCSSS
T ss_pred eeeEEEEEEeccccCcc----C------------------------------CCcEEEEEEEecCCCcccceeecccccC
Confidence 58999999999999852 1 89999999954 1357999 8875
Q ss_pred -CCCCeeee-eEEE-eecCCC-ceEEEEEEeCCCCCCcceeEEEecccccccCCceeeEEEcccCCCCCCCCcceEEEEE
Q 003153 86 -CQNPIWNE-HFKI-PLAHPV-SQIEFYVKDNDVFGADLIGVATIPAARIKSGESISDWFPILGLYGKPPKSETAVFMEM 161 (843)
Q Consensus 86 -~~nP~WnE-~f~~-~v~~~~-~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~~~~~~~g~l~l~l 161 (843)
+.||+||| +|.| .+..+. ..|.|.|+|++ +++||++.||++.|..|. .|++|.+..|++.. .+.|.|++
T Consensus 723 n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~-~~~Lfv~i 795 (799)
T 2zkm_X 723 NSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLT-MPALFIFL 795 (799)
T ss_dssp CCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEE-EEEEEEEE
T ss_pred CCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCC-ceEEEEEE
Confidence 69999999 6999 775443 36899999987 799999999999998775 48999988887643 57888888
Q ss_pred EEE
Q 003153 162 RFL 164 (843)
Q Consensus 162 ~~~ 164 (843)
++.
T Consensus 796 ~~~ 798 (799)
T 2zkm_X 796 EMK 798 (799)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 59
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=98.99 E-value=5.4e-10 Score=131.85 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=83.7
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCh
Q 003153 540 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSA 614 (843)
Q Consensus 540 ~ayl~aI~~Ak~-----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~ 614 (843)
++++++|++|++ .|+| ++||+++. ..++.++++|.++| ++|+|+++..+..+ ...
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------------~~I~~AL~~AA~rG--V~VrVLvd~~a~~~-~~~ 409 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKD----------------SRIIDSMIHAAHNG--KKVTVVVELQARFD-EEA 409 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------------CHHHHHHHHHHHTT--CEEEEEECTTCSST-TTT
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCc----------------HHHHHHHHHHHhcC--CEEEEEECCCcccc-hhh
Confidence 368889999997 9999 89998421 25677777776555 99999999754111 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEEe
Q 003153 615 SVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYVH 694 (843)
Q Consensus 615 ~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 694 (843)
.. ...+.|.++|+++ +. +.| ...+|
T Consensus 410 ---------n~-------~~~~~L~~aGV~V---------~~-----------~~~-------------------~~k~H 434 (687)
T 1xdp_A 410 ---------NI-------HWAKRLTEAGVHV---------IF-----------SAP-------------------GLKIH 434 (687)
T ss_dssp ---------TT-------TTTHHHHHHTCEE---------EE-----------CCT-------------------TCEEC
T ss_pred ---------HH-------HHHHHHHHCCCEE---------EE-----------ecC-------------------Ccccc
Confidence 01 1246788889864 11 111 11499
Q ss_pred eeEEEEee----e---EEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 695 AKGMVVDD----E---YVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 695 sKlmIVDD----~---~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
+|+||||+ + |++|||+|+|.||+. .++|+++.+.++..
T Consensus 435 ~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i 479 (687)
T 1xdp_A 435 AKLFLISRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARI 479 (687)
T ss_dssp CEEEEEEEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHH
T ss_pred ceEEEEEeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHH
Confidence 99999995 4 499999999999997 45999999987643
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.98 E-value=8.7e-10 Score=132.20 Aligned_cols=105 Identities=26% Similarity=0.438 Sum_probs=90.5
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEECC----EEEEEeeeccCC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLGG----ATVARTRVISNC 86 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~~----~~~~rT~vi~~~ 86 (843)
..+.|.|+|.+|++|+++|..+. +||||++.+.. ..+.+|++++++
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------sDPyvkv~l~p~~~~~~k~kT~v~~~t 219 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGL------------------------------SDPYVKLKLIPDPKSESKQKTKTIKSS 219 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSS------------------------------CCEEEEEEEESCSSCCSCEECCCCSSC
T ss_pred ccceeeeeeecccccCCCCcccc------------------------------cCcccccccccCccccccccccccccc
Confidence 36899999999999999987665 89999999832 345799999999
Q ss_pred CCCeeeeeEEEeecCC--CceEEEEEEeCCCCC-CcceeEEEecccccccCCceeeEEEcccC
Q 003153 87 QNPIWNEHFKIPLAHP--VSQIEFYVKDNDVFG-ADLIGVATIPAARIKSGESISDWFPILGL 146 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~~--~~~l~~~V~d~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 146 (843)
.||.|||+|.|.+... ...|.|+|||.|.++ +++||.+.+++.++..+. .++|++|++.
T Consensus 220 lnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 220 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeeccc
Confidence 9999999999998643 345999999999987 899999999999998654 5899999765
No 61
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.89 E-value=2.4e-08 Score=90.69 Aligned_cols=89 Identities=13% Similarity=0.313 Sum_probs=76.0
Q ss_pred CCcEEEEEECCEEEE---Ee-eeccCCCCCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccc-----cC
Q 003153 64 SDPYVTVCLGGATVA---RT-RVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIK-----SG 134 (843)
Q Consensus 64 ~DpYv~v~l~~~~~~---rT-~vi~~~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~-----~g 134 (843)
.||||.|.+...... +| ...+.|..|.|||+|.-.+.. ...|.|.|++... ++++.+.|++++|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 799999999876655 77 666679999999999998764 7789999997655 99999999999998 45
Q ss_pred CceeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 135 ESISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 135 ~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
...+.|++| ++.|+|++.++|+
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 677899999 4589999999986
No 62
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.88 E-value=1.5e-08 Score=93.15 Aligned_cols=93 Identities=18% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCcEEEEEECCEEE---EEe-eeccCCCCCeeeeeEEEeecCCCceEEEEEEeCCCCCCcceeEEEecccccc-----cC
Q 003153 64 SDPYVTVCLGGATV---ART-RVISNCQNPIWNEHFKIPLAHPVSQIEFYVKDNDVFGADLIGVATIPAARIK-----SG 134 (843)
Q Consensus 64 ~DpYv~v~l~~~~~---~rT-~vi~~~~nP~WnE~f~~~v~~~~~~l~~~V~d~d~~~~~~IG~~~ipl~~l~-----~g 134 (843)
.||||.|.+..... ++| ...+.|..|+|||+|.-.+.. ...|.|.|++... ++++.+.|++++|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 79999999988666 888 666779999999999988764 6789999997555 89999999999998 45
Q ss_pred CceeeEEEcccCCCCCCCCcceEEEEEEEEeccC
Q 003153 135 ESISDWFPILGLYGKPPKSETAVFMEMRFLPCEE 168 (843)
Q Consensus 135 ~~~~~w~~L~~~~~~~~~~~g~l~l~l~~~~~~~ 168 (843)
...+.|++| ++.|+|++.++|.....
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~e~~ 133 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFLEMS 133 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECCCSS
T ss_pred CceEEEEec--------ccCcEEEEEEEEEEecc
Confidence 677899999 45899999999974433
No 63
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.73 E-value=3.9e-08 Score=111.77 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCChh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSAS 615 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~~ 615 (843)
.....+++++|++||++||||..||.+.. ++.+++.+|.+|.++++||+|+|+++.........++
T Consensus 36 ~~~~~~l~~~I~~A~~~I~i~~~~~~~d~--------------~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~ 101 (458)
T 3hsi_A 36 AEFKTQIIELIRNAKKRIYVTALYWQKDE--------------AGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGA 101 (458)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCBCSSH--------------HHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC--
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEEecCc--------------HHHHHHHHHHHHHhcCCCCEEEEEEECcccccccccc
Confidence 35778999999999999999999998421 2467888888888887789999999953210000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcEE--EeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeE
Q 003153 616 VQEILYWQGQTRQMMYEIIAQELNSMQ--MENSHPQDYLN--FYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMI 691 (843)
Q Consensus 616 ~~~~~~~~~~t~~~~~~~i~~~L~~~g--~~~~~p~~yl~--f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 691 (843)
.. .+.. ..++..|.++| +++ . +|.+..+ +. +...
T Consensus 102 ~~---~~~~-------~~~~~~L~~~g~nv~v-------~~~~f~~p~~---------~~----------------~~~~ 139 (458)
T 3hsi_A 102 EK---SATN-------ADWYCEQRQTYQLPDD-------PNMFFGVPIN---------TR----------------EVFG 139 (458)
T ss_dssp ------CCH-------HHHHHHHHHHHTCTTC-------CCCEEEECSS---------SS----------------GGGC
T ss_pred cc---cccc-------HHHHHHHHhhCCCceE-------eeeecCCccc---------cc----------------cccC
Confidence 00 0000 12355666666 554 2 3431100 00 0011
Q ss_pred EEeeeEEEEeeeEEEEcccCccCCCcCC
Q 003153 692 YVHAKGMVVDDEYVILGSANINQRSLAG 719 (843)
Q Consensus 692 yvHsKlmIVDD~~~iiGSANin~RSm~~ 719 (843)
..|.|++||||++++.| +||+++++..
T Consensus 140 r~H~Ki~viD~~v~~~G-~Ni~d~y~~~ 166 (458)
T 3hsi_A 140 VLHVKGFVFDDTVLYSG-ASINNVYLHQ 166 (458)
T ss_dssp CEECCEEEETTEEEEES-CCBSTTTTTC
T ss_pred cceeeEEEECCCEEEEe-eecCHHHhcC
Confidence 49999999999997777 9999999863
No 64
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.58 E-value=1.4e-07 Score=109.21 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhccceEEEeeccc-ccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCh
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYF-LGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSSA 614 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF-~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~~ 614 (843)
.++..+++++|++||++|||+..+| ... . +...+..+|.+|.++|++|+|+|++...+.+....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d------~--------~g~~i~~aL~~aa~rGp~V~Vril~D~~g~~~~~~- 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG------A--------FQDAIVAGLKESAAKGNKLKVRILVGAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH------H--------HHHHHHHHHHHHHHTTCCEEEEEEEECCC--CCCC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC------h--------HHHHHHHHHHHHHhCCCCcEEEEEEeCcccccccc-
Confidence 5688999999999999999998773 321 0 24578888888877777799999998643221110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEee--cCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEE
Q 003153 615 SVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYC--LGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIY 692 (843)
Q Consensus 615 ~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 692 (843)
. .+ ...+.|+++|+.. . .++.+.. +.... .+ .. .
T Consensus 130 -~-------~~-------~~~~~L~~~g~~~-~--~~~~~~~~~~~~~~-------~~------------------~~-r 165 (506)
T 1v0w_A 130 -I-------PS-------KYRDELTAKLGKA-A--ENITLNVASMTTSK-------TA------------------FS-W 165 (506)
T ss_dssp -H-------HH-------HHHHHHHHHHGGG-G--GGEEEEEEEECSBT-------TT------------------TB-C
T ss_pred -C-------CH-------HHHHHHHhcccce-e--ecCccccccccccC-------Cc------------------cc-c
Confidence 0 01 1245566655532 1 1232221 10000 00 01 4
Q ss_pred EeeeEEEEeeeEEEEcccCc-cCCCcCCC-CCcceEEeeecC
Q 003153 693 VHAKGMVVDDEYVILGSANI-NQRSLAGG-RDTEIAMGAYQP 732 (843)
Q Consensus 693 vHsKlmIVDD~~~iiGSANi-n~RSm~~~-rDsEi~v~i~d~ 732 (843)
.|.|++|||++++++||+|| +++.+..+ .=.++.+.+..|
T Consensus 166 ~H~K~~ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~ 207 (506)
T 1v0w_A 166 NHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGP 207 (506)
T ss_dssp BCCCEEEETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESH
T ss_pred ceeeEEEECCcEEEeeccccCccccccCCCCceEEEEEEECH
Confidence 89999999999999999998 66554311 115777777655
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=97.92 E-value=3.4e-05 Score=90.54 Aligned_cols=119 Identities=12% Similarity=0.131 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccc-----eEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCC
Q 003153 539 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMWPEGAPSS 613 (843)
Q Consensus 539 ~~ayl~aI~~Ak~-----~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~peg~~~~ 613 (843)
.++++++|++|++ .|.|+ .|.++.. ..++.++++|.++| ++|+|++....-.+..
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~AA~rG--v~V~vLvel~arfdee- 413 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAAAQSG--KKVSVFVELKARFDEE- 413 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHHHHTT--CEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHHHHCC--CEEEEEEeCCCCcchh-
Confidence 3489999999999 99975 5555321 26778888887666 9999999853211100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEeecCCccCCCCCCCCCCCCCCCCchhhhhhccceeeEEE
Q 003153 614 ASVQEILYWQGQTRQMMYEIIAQELNSMQMENSHPQDYLNFYCLGNREEVPQGEPGLNNQTSNGELISASQKFQRFMIYV 693 (843)
Q Consensus 614 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~g~~~~~p~~yl~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 693 (843)
... ...+.|.++|+++ +|.+. ..-+
T Consensus 414 ~ni----------------~wa~~Le~aGv~V--------v~g~~-------------------------------~lk~ 438 (705)
T 2o8r_A 414 NNL----------------RLSERMRRSGIRI--------VYSMP-------------------------------GLKV 438 (705)
T ss_dssp -CH----------------HHHHHHHHHTCEE--------EECCT-------------------------------TCCB
T ss_pred hhH----------------HHHHHHHHCCCEE--------EEccC-------------------------------CCCc
Confidence 011 1257788999874 23220 0138
Q ss_pred eeeEEEEeee---------EEEEcccCccCCCcCCCCCcceEEeeecCCc
Q 003153 694 HAKGMVVDDE---------YVILGSANINQRSLAGGRDTEIAMGAYQPHH 734 (843)
Q Consensus 694 HsKlmIVDD~---------~~iiGSANin~RSm~~~rDsEi~v~i~d~~~ 734 (843)
|+|++|||++ |+.+|+.|+|+.+.... +++++...++..
T Consensus 439 H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tariy--~D~~l~t~~~~i 486 (705)
T 2o8r_A 439 HAKTALILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANTDI 486 (705)
T ss_dssp CCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCHHH
T ss_pred eeEEEEEecccccCCceeEEEeccccceeeeEEEEE--eeeeeeecChHH
Confidence 9999999988 78999999999998743 888888877643
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=95.70 E-value=0.015 Score=63.33 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEE
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLV 289 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLv 289 (843)
+...+.+.+.|.+|+++|++..|.-. -..+.+.|.++++|||+|++++
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~-----------------l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEF-----------------FETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHH-----------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHH-----------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 67789999999999999999876310 1467789999999999999997
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.84 E-value=0.014 Score=63.38 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecCC
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPMW 606 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~~ 606 (843)
..|.+...++|++|++.||+...+.. -..+...+.++.+ +|++|++++|..
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~------------------l~~l~~~L~~a~~--RGV~Vrvi~~~~ 168 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEF------------------FETIREDLIKTLE--RGVTVSLYIDKI 168 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHH------------------HHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHH------------------HHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 67899999999999999999865432 1234445555544 559999999753
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=94.22 E-value=0.055 Score=55.28 Aligned_cols=50 Identities=20% Similarity=0.110 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeeceeeEEeeCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeC
Q 003153 225 ERCWEDICHAILEAHHLVYIVGWSVFHKVKLVREPTKPLPSGGNLSLGDLLKYKSQEGVRVLLLVWD 291 (843)
Q Consensus 225 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~lL~~ka~~GV~VriLvwd 291 (843)
+...+.+.+.|++|+++|++..|. . .-..|.+.|++|++|||.|+++++.
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~----------e-------~l~~l~~~L~~A~~rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS----------E-------FFETIREDLIKTLERGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG----------G-------GHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH----------H-------HHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 678899999999999999997662 1 1257999999999999999999964
No 69
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=77.25 E-value=12 Score=37.69 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=32.9
Q ss_pred EEeeeEEEEe---eeEEEEcccCccCCCcCCCCCcceEEeeecC
Q 003153 692 YVHAKGMVVD---DEYVILGSANINQRSLAGGRDTEIAMGAYQP 732 (843)
Q Consensus 692 yvHsKlmIVD---D~~~iiGSANin~RSm~~~rDsEi~v~i~d~ 732 (843)
.+|+|+-..- ...++|||.|+.---|..| -|+++.++++
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQN--vE~sllld~~ 144 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMSQN--IEASLLLDNN 144 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTTTS--BEEEEEECHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccccc--eeEEEEEcCC
Confidence 3799988764 6789999999999999755 9999999664
No 70
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=73.77 E-value=10 Score=35.81 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=65.9
Q ss_pred cEEEEEECCEEEEEeeeccCCCCCeeeeeEEEeecCCC--------ceEEEEEEeCCCCCCcceeEEEecccccccC-Cc
Q 003153 66 PYVTVCLGGATVARTRVISNCQNPIWNEHFKIPLAHPV--------SQIEFYVKDNDVFGADLIGVATIPAARIKSG-ES 136 (843)
Q Consensus 66 pYv~v~l~~~~~~rT~vi~~~~nP~WnE~f~~~v~~~~--------~~l~~~V~d~d~~~~~~IG~~~ipl~~l~~g-~~ 136 (843)
.||++.+-.-...-|.++. +.+|.+|-+-++.|.-.. ..+.+++.......-..||.+.|++.++... ..
T Consensus 44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~ 122 (156)
T 2yrb_A 44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR 122 (156)
T ss_dssp EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence 3555555554554666655 889999988877774321 2477777765332248999999999999853 34
Q ss_pred eeeEEEcccCCCCCCCCcceEEEEEEEE
Q 003153 137 ISDWFPILGLYGKPPKSETAVFMEMRFL 164 (843)
Q Consensus 137 ~~~w~~L~~~~~~~~~~~g~l~l~l~~~ 164 (843)
+.+-.+|.+..+.. ..-|.|.+.++..
T Consensus 123 i~g~~~L~g~~g~~-~~~G~LeywiRL~ 149 (156)
T 2yrb_A 123 IFCTASLIGTKGDI-PNFGTVEYWFRLR 149 (156)
T ss_dssp EEEEEEECBSSSCC-TTSEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCc-ceEEEEEEEEEEe
Confidence 66778898877642 2468888877754
No 71
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=58.53 E-value=17 Score=36.16 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=31.8
Q ss_pred EEEEeeeccCCCCCeeeeeEEEeecCC---CceEEEEEEeCCC
Q 003153 76 TVARTRVISNCQNPIWNEHFKIPLAHP---VSQIEFYVKDNDV 115 (843)
Q Consensus 76 ~~~rT~vi~~~~nP~WnE~f~~~v~~~---~~~l~~~V~d~d~ 115 (843)
..++|.|...+.+|.|+|++.+.++.. ...|.|+++....
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 456888888899999999999998653 3459999987543
No 72
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=54.55 E-value=24 Score=43.03 Aligned_cols=70 Identities=14% Similarity=0.422 Sum_probs=47.1
Q ss_pred EeeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEE--CCEEE---EEeeeccC
Q 003153 11 LHGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCL--GGATV---ARTRVISN 85 (843)
Q Consensus 11 l~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l--~~~~~---~rT~vi~~ 85 (843)
+...+.|+|..+.++...+ .++-||.+.+ ++... ..|..+.-
T Consensus 215 ~~~~f~i~i~~~~~~~~~~---------------------------------~~~~~V~~~l~~g~~~l~~~~~T~~~~~ 261 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNADE---------------------------------RMKLVVQAGLFHGNEMLCKTVSSSEVNV 261 (940)
T ss_dssp CCSEEEEEEEEEECCCC------------------------------------CEEEEEEEEEETTEESSCCEECCCEES
T ss_pred cCCceEEEEEEecccCCCC---------------------------------CceEEEEEEEEECCEEccCceecccccC
Confidence 3567888888888876321 1567888765 34322 24555555
Q ss_pred CCCCeeeeeEEEeecC----CCceEEEEEEeC
Q 003153 86 CQNPIWNEHFKIPLAH----PVSQIEFYVKDN 113 (843)
Q Consensus 86 ~~nP~WnE~f~~~v~~----~~~~l~~~V~d~ 113 (843)
..+|.|||.+.|++.- ..+.|.|+||+.
T Consensus 262 ~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 293 (940)
T 2wxf_A 262 CSEPVWKQRLEFDISVCDLPRMARLCFALYAV 293 (940)
T ss_dssp CSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred CCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence 7889999999887642 345799999985
No 73
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=49.14 E-value=42 Score=41.43 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=51.8
Q ss_pred eeEEEEEEEEeeCCCCCCCchhhhhcccccccccccCccCcccccccCCCCCCCcEEEEEEC--CE---EEEEeeeccCC
Q 003153 12 HGDLDLKIVEARRLPNMDLVTARIRRCFAAFDTCRIPFTNSKKRVSHRKMITSDPYVTVCLG--GA---TVARTRVISNC 86 (843)
Q Consensus 12 ~G~L~V~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DpYv~v~l~--~~---~~~rT~vi~~~ 86 (843)
...+.|+|..+.++.... .. ..+.||.+.+- +. ...+|+.+. .
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~------------------------------~~~~~V~~~l~hG~~~L~~~~~T~~~~-~ 401 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RD------------------------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-C 401 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SS------------------------------CCCCCEEEEEESSSCSSCCEECCCCCC-T
T ss_pred CCCEEEEEEEecCCCCCc-cc------------------------------cceEEEEEEEEECCEEccCceeccccC-C
Confidence 567889998887775321 11 15778888763 32 222454433 5
Q ss_pred CCCeeeeeEEEeecC----CCceEEEEEEeCCCCC-----CcceeEEEecc
Q 003153 87 QNPIWNEHFKIPLAH----PVSQIEFYVKDNDVFG-----ADLIGVATIPA 128 (843)
Q Consensus 87 ~nP~WnE~f~~~v~~----~~~~l~~~V~d~d~~~-----~~~IG~~~ipl 128 (843)
.+|.|||...|++.- ..+.|.|+||+-...+ ...||-+.+++
T Consensus 402 ~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~l 452 (1091)
T 3hhm_A 402 SNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINL 452 (1091)
T ss_dssp TSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEES
T ss_pred CCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeee
Confidence 678899998887632 3557999999854421 23455555544
No 74
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=43.67 E-value=50 Score=33.21 Aligned_cols=50 Identities=6% Similarity=0.105 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCcccCCCCCCccHHHHHHHHHHHHHhcCCcEEEEEecC
Q 003153 536 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPDYKDAGADNTIPMELALKIASKIRAKERFAVYVVMPM 605 (843)
Q Consensus 536 ~sI~~ayl~aI~~Ak~~IYIEnQyF~~~~~~w~~~~~~~~~n~i~~~~a~~ia~a~~~~~~~~V~IVlP~ 605 (843)
..|.+-..++|++|++.|+++- |++. -.++...|.+|.++| +.|+|++..
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi---------~~e~---------l~~l~~~L~~A~~rG--V~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVT---------PSEF---------FETIREDLIKTLERG--VTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEE---------CGGG---------HHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEEEe---------CHHH---------HHHHHHHHHHHHHCC--CEEEEEEcC
Confidence 5788889999999999999942 2222 245666777776555 999999884
No 75
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=36.16 E-value=94 Score=37.97 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=34.0
Q ss_pred CCcEEEEEE--CCEEE--EEeeeccCCCCCeeeeeEEEeecC----CCceEEEEEEeCC
Q 003153 64 SDPYVTVCL--GGATV--ARTRVISNCQNPIWNEHFKIPLAH----PVSQIEFYVKDND 114 (843)
Q Consensus 64 ~DpYv~v~l--~~~~~--~rT~vi~~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d 114 (843)
++-||++.+ ++... .+|..+.-+.+|.|||.+.|++.- ..+.|.|+||+..
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 296 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGA 296 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEE
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecc
Confidence 567888754 44333 245555457789999998887632 3457999999743
No 76
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=30.32 E-value=15 Score=41.79 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=0.0
Q ss_pred cceeeEEEeeeEEE------------------EeeeEEEEcccCccCCCcCCC-----CCcceEEee
Q 003153 686 FQRFMIYVHAKGMV------------------VDDEYVILGSANINQRSLAGG-----RDTEIAMGA 729 (843)
Q Consensus 686 ~~~~~iyvHsKlmI------------------VDD~~~iiGSANin~RSm~~~-----rDsEi~v~i 729 (843)
.+|....-|.|+.| +| |+++|||||..-.+ |. +..|++|++
T Consensus 424 s~R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~--W~lltSaNLSkaAW-G~~~k~irnyElGVL~ 487 (544)
T 1q32_A 424 RRRGTTPAHSKFYMHCATNSAGPCDASQVFKELE--WCLYTSANLSQTAW-GTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTTTTCCBCCEEEEEEEECC-------CTTSEES--EEEEESCCBSHHHH-CCSSSCCSSBEEEEEE
T ss_pred CCCCCccCceEEEEeeccccccccccCCCcccee--EEEEccccCCHHHh-hhhhccccceEeEEEe
No 77
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=27.35 E-value=50 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHh-HHHhhh
Q 003153 773 ECVKFVNTIAEDN-WKKFTA 791 (843)
Q Consensus 773 ~~~~~~~~~a~~n-~~~~~~ 791 (843)
.|.+++++.|.+| |..|.+
T Consensus 3 ~~te~lrr~arrnawdly~e 22 (25)
T 3ech_C 3 DYTEQLRRAARRNAWDLYGE 22 (26)
T ss_dssp CHHHHHHHHHHHTHHHHHHS
T ss_pred cHHHHHHHHHHHhHHHHHHH
Confidence 4778899999887 887764
No 78
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=23.78 E-value=79 Score=39.13 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCcEEEEEE--CCEEE---EEeeeccCCCCCeeeeeEEEeecC----CCceEEEEEEeCC
Q 003153 64 SDPYVTVCL--GGATV---ARTRVISNCQNPIWNEHFKIPLAH----PVSQIEFYVKDND 114 (843)
Q Consensus 64 ~DpYv~v~l--~~~~~---~rT~vi~~~~nP~WnE~f~~~v~~----~~~~l~~~V~d~d 114 (843)
++-||.+.+ ++... .+|..+.-+.+|.|||.+.|++.- ..+.|.|+||+..
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC-
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEec
Confidence 456666443 44322 245555557789999998887643 3456999999853
No 79
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=20.83 E-value=38 Score=37.78 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.4
Q ss_pred EEeeeEEEE---ee-eEEEEcccCcc
Q 003153 692 YVHAKGMVV---DD-EYVILGSANIN 713 (843)
Q Consensus 692 yvHsKlmIV---DD-~~~iiGSANin 713 (843)
--|||+||. || .-++|-||||.
T Consensus 103 thHsKmmlL~y~dg~~RVvI~TANl~ 128 (470)
T 3sq7_A 103 SHHTKLIINFYDNGECKIFLPSNNFT 128 (470)
T ss_dssp CBCCCEEEEEETTSEEEEEEESSCBS
T ss_pred CccceeEEEEecCCCEEEEEecCCCC
Confidence 379999996 55 57999999994
Done!