BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003154
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6V|B Chain B, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
PSEUDOMALLEI
pdb|4G6V|D Chain D, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
PSEUDOMALLEI
pdb|4G6V|F Chain F, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
PSEUDOMALLEI
pdb|4G6V|H Chain H, Cdia-CtCDII TOXIN AND IMMUNITY COMPLEX FROM BURKHOLDERIA
PSEUDOMALLEI
Length = 111
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
+ D D+ +++I HG + +L+ L+D + D+ + +IL D NG +L N
Sbjct: 40 VRDADFSLKEIAAEHGLVAESFFLVSLNDKNSADLIPIVSKILVDGFNGGAILILQDNEY 99
Query: 323 ILTSFQ 328
TS +
Sbjct: 100 RRTSLE 105
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 243 DSLLDNIIKFLMPSSKLSEV---------MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVW 293
++ + I ++ P SK++ + M DY++ K++ L Y+ KRY++ +
Sbjct: 106 EAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYV--KRYMMYQQGXF 163
Query: 294 TNDVWEFIQEILPDNLNGSRVLTTVSNIEILT 325
+ + L +N G+RVL S + +T
Sbjct: 164 AGGTVLRLAKDLAENNKGARVLVVCSEVTAVT 195
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 136 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 193
Query: 323 ILT 325
+T
Sbjct: 194 AVT 196
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 136 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 193
Query: 323 ILT 325
+T
Sbjct: 194 AVT 196
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 263 MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322
M DY++ K++ L Y+ KRY++ + + + L +N G+RVL S +
Sbjct: 137 MPGADYQLTKLLGLRPYV--KRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 323 ILT 325
+T
Sbjct: 195 AVT 197
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 649 PDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKL---VNESKMPR-------L 698
P L +L SL + NY + SL LS L LKL + E ++P+ L
Sbjct: 408 PPTLSNCSELVSLHL--SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 699 SKIVL----FENQFPPSLTH------LSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748
++L + P L++ +S SN L + + +L L +LKL NS+SG
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 749 RKLACGSDGFPKLKVLHLKSMIWLE 773
A ++ +S+IWL+
Sbjct: 526 NIPA---------ELGDCRSLIWLD 541
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 649 PDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKL---VNESKMPR-------L 698
P L +L SL + NY + SL LS L LKL + E ++P+ L
Sbjct: 411 PPTLSNCSELVSLHL--SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 699 SKIVL----FENQFPPSLTH------LSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748
++L + P L++ +S SN L + + +L L +LKL NS+SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 749 RKLACGSDGFPKLKVLHLKSMIWLE 773
A ++ +S+IWL+
Sbjct: 529 NIPA---------ELGDCRSLIWLD 544
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 653 GRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLE-------SLKLVNESKMPRLSKIVLFE 705
G LP LG+L + + LL ++L L+ L+ SL L + L ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 706 NQF----------PPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNS 745
N+ P L LS +N DL + P L L L L L++NS
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,058,806
Number of Sequences: 62578
Number of extensions: 1039625
Number of successful extensions: 2073
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2061
Number of HSP's gapped (non-prelim): 42
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)