Query 003154
Match_columns 843
No_of_seqs 530 out of 4676
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-87 4.7E-92 787.6 38.5 754 1-802 1-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 4E-59 8.6E-64 579.5 40.9 604 174-818 183-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-39 3.1E-44 347.6 16.2 242 180-424 1-284 (287)
4 KOG0444 Cytoskeletal regulator 99.9 2.4E-28 5.3E-33 259.7 -3.9 316 489-819 54-374 (1255)
5 PLN00113 leucine-rich repeat r 99.9 4.9E-23 1.1E-27 257.0 20.8 271 539-815 139-436 (968)
6 PLN00113 leucine-rich repeat r 99.9 4.8E-23 1E-27 257.0 19.6 318 490-818 118-486 (968)
7 KOG4194 Membrane glycoprotein 99.8 1.3E-21 2.8E-26 208.0 5.9 311 489-813 101-445 (873)
8 KOG0444 Cytoskeletal regulator 99.8 5.2E-22 1.1E-26 211.8 -6.0 312 489-818 31-350 (1255)
9 KOG4194 Membrane glycoprotein 99.8 8.7E-21 1.9E-25 201.7 3.0 296 511-818 77-427 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.5E-17 5.5E-22 206.0 21.4 269 511-800 588-910 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 2.2E-20 4.9E-25 190.6 -5.9 88 728-818 429-539 (565)
12 KOG0618 Serine/threonine phosp 99.7 3.7E-18 8.1E-23 191.5 -2.3 103 512-620 45-147 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 7.4E-19 1.6E-23 179.6 -8.2 263 514-819 47-309 (565)
14 KOG0618 Serine/threonine phosp 99.6 1E-16 2.3E-21 180.1 -3.2 85 492-582 47-133 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 4.8E-14 1E-18 164.1 15.2 258 495-801 206-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 162.5 10.9 223 541-818 200-426 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 2.2E-13 4.8E-18 159.7 11.6 245 492-770 180-426 (754)
18 PRK15387 E3 ubiquitin-protein 99.4 2.4E-12 5.2E-17 150.1 12.6 236 489-771 221-457 (788)
19 cd00116 LRR_RI Leucine-rich re 99.4 1E-13 2.2E-18 150.5 0.3 263 532-818 15-318 (319)
20 KOG0617 Ras suppressor protein 99.3 3.3E-14 7.1E-19 129.5 -4.2 151 538-692 31-183 (264)
21 KOG4237 Extracellular matrix p 99.3 1.9E-13 4E-18 140.4 -3.0 130 504-637 59-194 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.3 1.4E-11 3.1E-16 146.9 10.5 147 511-665 522-677 (889)
23 KOG0617 Ras suppressor protein 99.2 1.5E-13 3.3E-18 125.2 -5.2 159 558-747 28-186 (264)
24 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-12 3.6E-17 141.0 0.4 262 511-794 22-318 (319)
25 PRK00411 cdc6 cell division co 99.1 1.2E-08 2.6E-13 114.2 24.4 288 173-466 28-380 (394)
26 KOG3207 Beta-tubulin folding c 98.9 2.7E-10 5.8E-15 119.2 2.4 237 555-819 113-366 (505)
27 TIGR02928 orc1/cdc6 family rep 98.9 1.8E-07 4E-12 103.5 23.9 270 174-448 14-352 (365)
28 PRK04841 transcriptional regul 98.9 4E-08 8.6E-13 122.5 20.8 270 175-472 14-333 (903)
29 KOG4237 Extracellular matrix p 98.9 1.4E-10 3E-15 119.6 -1.1 246 488-745 65-357 (498)
30 KOG1909 Ran GTPase-activating 98.8 1.1E-09 2.4E-14 111.8 0.1 253 532-795 22-310 (382)
31 PF14580 LRR_9: Leucine-rich r 98.8 8E-09 1.7E-13 99.3 5.1 128 537-690 16-148 (175)
32 KOG4341 F-box protein containi 98.7 1.1E-09 2.3E-14 114.2 -2.0 289 513-827 139-446 (483)
33 COG4886 Leucine-rich repeat (L 98.7 1.8E-08 3.9E-13 112.8 6.5 180 535-748 111-291 (394)
34 KOG3207 Beta-tubulin folding c 98.7 3.6E-09 7.7E-14 111.0 -0.6 205 511-747 120-339 (505)
35 PF14580 LRR_9: Leucine-rich r 98.6 2.6E-08 5.7E-13 95.7 4.9 107 511-624 18-127 (175)
36 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.8E-14 115.8 -4.3 176 534-744 92-270 (722)
37 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.5E-14 107.8 -5.0 183 589-795 187-375 (419)
38 TIGR03015 pepcterm_ATPase puta 98.6 1.8E-06 3.9E-11 91.2 17.6 174 184-365 28-243 (269)
39 KOG1259 Nischarin, modulator o 98.6 9E-09 1.9E-13 102.5 -0.1 85 679-770 326-410 (490)
40 TIGR00635 ruvB Holliday juncti 98.5 1.7E-07 3.7E-12 100.9 7.4 249 175-446 4-289 (305)
41 KOG0532 Leucine-rich repeat (L 98.5 8.1E-09 1.8E-13 111.5 -2.9 181 502-721 86-271 (722)
42 cd01128 rho_factor Transcripti 98.5 2.1E-07 4.6E-12 95.3 7.0 94 198-294 16-114 (249)
43 COG4886 Leucine-rich repeat (L 98.5 1.7E-07 3.7E-12 104.9 6.3 194 543-772 96-290 (394)
44 PF05729 NACHT: NACHT domain 98.4 7E-07 1.5E-11 86.5 9.2 113 199-323 1-132 (166)
45 KOG1259 Nischarin, modulator o 98.4 7.6E-08 1.6E-12 96.0 2.1 135 652-801 280-416 (490)
46 PRK00080 ruvB Holliday junctio 98.4 1.3E-06 2.8E-11 94.7 11.9 250 174-446 24-310 (328)
47 PF13855 LRR_8: Leucine rich r 98.4 1.3E-07 2.8E-12 74.6 2.7 57 541-597 2-59 (61)
48 PF13855 LRR_8: Leucine rich r 98.4 1.2E-07 2.6E-12 74.8 2.4 60 563-622 1-61 (61)
49 cd00009 AAA The AAA+ (ATPases 98.4 2.5E-06 5.5E-11 80.5 11.9 123 178-322 1-131 (151)
50 PRK09376 rho transcription ter 98.4 3.6E-07 7.9E-12 97.2 5.9 94 198-294 169-267 (416)
51 PF13401 AAA_22: AAA domain; P 98.4 1E-06 2.2E-11 81.7 7.8 113 198-320 4-125 (131)
52 PF13191 AAA_16: AAA ATPase do 98.3 9.6E-07 2.1E-11 87.4 6.5 50 176-227 1-51 (185)
53 KOG1909 Ran GTPase-activating 98.3 6.7E-08 1.5E-12 99.0 -2.0 240 511-770 29-309 (382)
54 KOG2982 Uncharacterized conser 98.3 6.6E-07 1.4E-11 89.5 4.3 91 532-622 63-158 (418)
55 PF13173 AAA_14: AAA domain 98.2 2.1E-06 4.6E-11 79.2 6.8 101 198-324 2-102 (128)
56 COG2909 MalT ATP-dependent tra 98.2 9.3E-05 2E-09 85.0 19.4 268 185-473 25-340 (894)
57 COG3903 Predicted ATPase [Gene 98.2 4.6E-06 1E-10 88.4 7.7 235 197-447 13-293 (414)
58 KOG2120 SCF ubiquitin ligase, 98.1 6E-08 1.3E-12 96.8 -5.9 181 540-770 185-374 (419)
59 PTZ00202 tuzin; Provisional 98.1 2.7E-05 5.8E-10 83.6 13.2 78 171-256 258-336 (550)
60 PF01637 Arch_ATPase: Archaeal 98.1 7.4E-06 1.6E-10 84.3 8.1 60 177-240 1-60 (234)
61 TIGR00767 rho transcription te 98.1 6.5E-06 1.4E-10 88.4 7.2 94 198-294 168-266 (415)
62 PLN03150 hypothetical protein; 98.1 5.7E-06 1.2E-10 97.3 7.1 83 541-624 419-504 (623)
63 KOG0531 Protein phosphatase 1, 98.0 8.1E-07 1.8E-11 99.7 -0.7 224 536-799 91-321 (414)
64 KOG2982 Uncharacterized conser 98.0 1.4E-06 3E-11 87.3 1.0 82 541-622 46-133 (418)
65 COG5238 RNA1 Ran GTPase-activa 98.0 4.4E-07 9.5E-12 89.6 -2.7 249 536-795 26-315 (388)
66 PTZ00112 origin recognition co 98.0 6E-05 1.3E-09 87.2 13.0 117 174-295 754-881 (1164)
67 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.3E-10 58.4 3.7 38 564-602 2-39 (44)
68 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 58.3 3.6 41 540-580 1-41 (44)
69 KOG0531 Protein phosphatase 1, 97.9 2.6E-06 5.6E-11 95.7 0.2 105 511-623 94-199 (414)
70 COG1474 CDC6 Cdc6-related prot 97.9 0.00012 2.7E-09 79.5 13.1 112 176-295 18-135 (366)
71 PLN03150 hypothetical protein; 97.9 1.7E-05 3.6E-10 93.4 6.7 89 710-799 442-531 (623)
72 PRK05564 DNA polymerase III su 97.9 0.00016 3.6E-09 77.8 13.2 125 175-322 4-134 (313)
73 PRK13342 recombination factor 97.8 7.1E-05 1.5E-09 83.8 10.4 107 175-316 12-124 (413)
74 PRK15386 type III secretion pr 97.8 6.5E-05 1.4E-09 81.3 9.0 64 536-605 48-113 (426)
75 KOG4341 F-box protein containi 97.8 3.8E-06 8.2E-11 88.2 -1.1 255 540-818 138-412 (483)
76 PRK11331 5-methylcytosine-spec 97.8 0.0001 2.2E-09 80.7 9.6 109 174-295 174-284 (459)
77 PRK06893 DNA replication initi 97.7 6.4E-05 1.4E-09 76.9 7.3 38 198-237 39-76 (229)
78 KOG2543 Origin recognition com 97.7 0.00022 4.9E-09 74.6 10.1 116 174-296 5-128 (438)
79 TIGR02903 spore_lon_C ATP-depe 97.7 0.00017 3.6E-09 84.4 10.1 142 175-321 154-334 (615)
80 PRK12402 replication factor C 97.7 0.00021 4.6E-09 78.1 10.5 45 175-221 15-59 (337)
81 PRK15386 type III secretion pr 97.6 0.00024 5.2E-09 77.0 9.8 56 559-620 48-104 (426)
82 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.9E-10 90.3 3.7 129 490-624 122-264 (699)
83 TIGR03420 DnaA_homol_Hda DnaA 97.6 0.00016 3.4E-09 74.1 8.0 54 180-237 22-75 (226)
84 PRK07003 DNA polymerase III su 97.6 0.00044 9.5E-09 79.9 12.1 136 175-322 16-160 (830)
85 COG2256 MGS1 ATPase related to 97.6 0.00037 8E-09 73.7 9.9 114 171-321 26-143 (436)
86 PRK13341 recombination factor 97.5 0.00035 7.7E-09 82.5 10.4 50 175-228 28-80 (725)
87 KOG3665 ZYG-1-like serine/thre 97.5 6.7E-05 1.4E-09 88.1 4.2 107 511-621 121-231 (699)
88 PRK04195 replication factor C 97.5 0.00043 9.3E-09 79.2 10.4 118 175-320 14-139 (482)
89 KOG4579 Leucine-rich repeat (L 97.5 4.1E-05 8.9E-10 68.3 1.4 75 531-606 68-142 (177)
90 PLN03025 replication factor C 97.5 0.00075 1.6E-08 72.9 11.3 122 175-320 13-138 (319)
91 KOG2028 ATPase related to the 97.5 0.00069 1.5E-08 70.2 10.2 118 172-322 141-262 (554)
92 PRK00440 rfc replication facto 97.5 0.00088 1.9E-08 72.6 11.9 45 175-221 17-61 (319)
93 PRK14961 DNA polymerase III su 97.5 0.0016 3.5E-08 71.6 13.8 136 175-321 16-159 (363)
94 TIGR01242 26Sp45 26S proteasom 97.5 0.00019 4.2E-09 79.0 6.7 48 174-221 121-179 (364)
95 smart00382 AAA ATPases associa 97.5 0.0007 1.5E-08 63.0 9.6 89 199-297 3-92 (148)
96 PRK08116 hypothetical protein; 97.4 0.00081 1.7E-08 70.3 10.8 102 199-321 115-221 (268)
97 PHA02544 44 clamp loader, smal 97.4 0.00097 2.1E-08 72.1 11.9 120 174-322 20-142 (316)
98 PRK14960 DNA polymerase III su 97.4 0.0012 2.7E-08 75.5 12.6 135 175-321 15-158 (702)
99 PRK14957 DNA polymerase III su 97.4 0.0013 2.9E-08 75.0 12.9 45 175-220 16-60 (546)
100 PRK14949 DNA polymerase III su 97.4 0.0011 2.4E-08 78.2 12.4 46 175-221 16-61 (944)
101 PRK08118 topology modulation p 97.4 7.9E-05 1.7E-09 72.0 1.9 35 199-233 2-37 (167)
102 PRK14963 DNA polymerase III su 97.3 0.00026 5.5E-09 80.5 6.0 132 175-320 14-155 (504)
103 PRK12323 DNA polymerase III su 97.3 0.002 4.2E-08 73.7 12.2 144 175-325 16-169 (700)
104 KOG1859 Leucine-rich repeat pr 97.3 6.2E-06 1.3E-10 92.0 -7.5 109 650-770 181-290 (1096)
105 KOG4579 Leucine-rich repeat (L 97.3 8.4E-05 1.8E-09 66.4 0.9 80 537-617 50-130 (177)
106 PRK08727 hypothetical protein; 97.3 0.00094 2E-08 68.5 8.8 37 198-236 41-77 (233)
107 PRK14962 DNA polymerase III su 97.2 0.0024 5.2E-08 72.1 11.9 46 175-221 14-59 (472)
108 PRK10536 hypothetical protein; 97.2 0.0037 8.1E-08 63.5 11.8 57 173-233 53-109 (262)
109 COG3899 Predicted ATPase [Gene 97.2 0.003 6.6E-08 76.6 12.9 257 176-444 1-355 (849)
110 PF00004 AAA: ATPase family as 97.2 0.00073 1.6E-08 62.4 6.0 21 201-221 1-21 (132)
111 PRK08691 DNA polymerase III su 97.2 0.0034 7.3E-08 72.6 12.3 46 175-221 16-61 (709)
112 PRK06645 DNA polymerase III su 97.2 0.0038 8.3E-08 70.8 12.7 141 175-324 21-172 (507)
113 PF04665 Pox_A32: Poxvirus A32 97.1 0.00051 1.1E-08 69.4 5.0 37 198-236 13-49 (241)
114 PRK14958 DNA polymerase III su 97.1 0.0032 7E-08 71.8 12.1 133 175-320 16-158 (509)
115 CHL00181 cbbX CbbX; Provisiona 97.1 0.0033 7.2E-08 66.4 11.1 46 175-220 23-81 (287)
116 PRK07994 DNA polymerase III su 97.1 0.0035 7.5E-08 72.8 11.9 140 175-324 16-163 (647)
117 PRK08181 transposase; Validate 97.1 0.001 2.2E-08 69.1 6.9 99 199-321 107-209 (269)
118 PRK14955 DNA polymerase III su 97.1 0.0033 7.1E-08 70.0 11.3 144 175-324 16-171 (397)
119 PRK14969 DNA polymerase III su 97.1 0.0055 1.2E-07 70.4 13.4 46 175-221 16-61 (527)
120 PRK03992 proteasome-activating 97.1 0.0014 3E-08 72.6 8.3 48 174-221 130-188 (389)
121 PF00308 Bac_DnaA: Bacterial d 97.1 0.0018 4E-08 65.5 8.3 123 175-321 9-140 (219)
122 PRK07940 DNA polymerase III su 97.1 0.0044 9.6E-08 68.2 11.8 46 175-220 5-58 (394)
123 TIGR02881 spore_V_K stage V sp 97.1 0.0018 3.9E-08 67.8 8.3 45 176-220 7-64 (261)
124 PRK05642 DNA replication initi 97.1 0.0022 4.7E-08 65.8 8.8 91 198-321 45-140 (234)
125 PRK14964 DNA polymerase III su 97.1 0.0049 1.1E-07 69.4 12.2 45 175-220 13-57 (491)
126 PRK14956 DNA polymerase III su 97.1 0.0019 4.2E-08 71.7 8.9 46 175-221 18-63 (484)
127 TIGR02397 dnaX_nterm DNA polym 97.0 0.0072 1.6E-07 66.5 13.0 45 175-220 14-58 (355)
128 PRK12377 putative replication 97.0 0.0031 6.8E-08 64.7 8.9 100 198-320 101-205 (248)
129 PRK14951 DNA polymerase III su 97.0 0.0062 1.3E-07 70.5 12.2 137 175-320 16-163 (618)
130 TIGR02880 cbbX_cfxQ probable R 96.9 0.0045 9.7E-08 65.4 10.2 46 175-220 22-80 (284)
131 KOG1644 U2-associated snRNP A' 96.9 0.001 2.3E-08 63.7 4.7 107 540-666 42-150 (233)
132 PRK05896 DNA polymerase III su 96.9 0.003 6.4E-08 72.3 9.2 46 175-221 16-61 (605)
133 TIGR02639 ClpA ATP-dependent C 96.9 0.0018 3.9E-08 77.9 7.9 116 174-306 453-578 (731)
134 PRK14088 dnaA chromosomal repl 96.9 0.0033 7.1E-08 70.7 9.5 122 174-319 105-235 (440)
135 PRK07764 DNA polymerase III su 96.9 0.007 1.5E-07 72.7 12.5 135 175-320 15-159 (824)
136 PRK08084 DNA replication initi 96.9 0.0025 5.4E-08 65.4 7.7 60 174-237 22-82 (235)
137 CHL00095 clpC Clp protease ATP 96.9 0.0031 6.8E-08 76.8 9.7 45 175-221 179-223 (821)
138 PF05496 RuvB_N: Holliday junc 96.9 0.00093 2E-08 66.1 4.2 54 173-228 22-78 (233)
139 PRK10865 protein disaggregatio 96.9 0.0028 6E-08 77.2 8.8 45 175-221 178-222 (857)
140 PF05673 DUF815: Protein of un 96.9 0.0084 1.8E-07 60.3 10.5 121 171-325 23-155 (249)
141 KOG2227 Pre-initiation complex 96.8 0.0061 1.3E-07 65.8 10.1 117 172-294 147-267 (529)
142 TIGR03689 pup_AAA proteasome A 96.8 0.0046 9.9E-08 69.9 9.6 47 175-221 182-239 (512)
143 KOG1947 Leucine rich repeat pr 96.8 0.00027 5.8E-09 81.4 -0.2 256 537-818 158-438 (482)
144 KOG2739 Leucine-rich acidic nu 96.8 0.00041 8.8E-09 69.4 1.0 88 535-624 38-130 (260)
145 TIGR00678 holB DNA polymerase 96.8 0.014 3.1E-07 57.7 12.1 40 282-321 95-136 (188)
146 PRK07261 topology modulation p 96.8 0.0033 7.2E-08 61.0 7.3 67 200-295 2-69 (171)
147 TIGR00362 DnaA chromosomal rep 96.8 0.0041 8.9E-08 69.7 9.0 122 175-320 111-241 (405)
148 PRK14970 DNA polymerase III su 96.8 0.01 2.3E-07 65.5 12.1 46 175-221 17-62 (367)
149 PRK14952 DNA polymerase III su 96.8 0.015 3.2E-07 67.2 13.5 46 175-221 13-58 (584)
150 KOG1859 Leucine-rich repeat pr 96.8 0.00021 4.5E-09 80.3 -1.5 105 511-624 186-293 (1096)
151 PTZ00454 26S protease regulato 96.8 0.004 8.6E-08 68.8 8.3 48 174-221 144-202 (398)
152 PRK09183 transposase/IS protei 96.7 0.0037 8.1E-08 65.0 7.5 22 199-220 103-124 (259)
153 PRK07952 DNA replication prote 96.7 0.0081 1.8E-07 61.5 9.6 115 184-320 85-204 (244)
154 PRK08903 DnaA regulatory inact 96.7 0.0069 1.5E-07 62.0 9.1 43 178-221 22-65 (227)
155 PRK00149 dnaA chromosomal repl 96.7 0.0057 1.2E-07 69.4 9.1 121 176-320 124-253 (450)
156 PRK12608 transcription termina 96.7 0.0065 1.4E-07 65.3 8.9 106 183-293 119-230 (380)
157 PRK06526 transposase; Provisio 96.7 0.0028 6.1E-08 65.5 6.0 24 198-221 98-121 (254)
158 PRK09087 hypothetical protein; 96.7 0.0069 1.5E-07 61.6 8.7 24 198-221 44-67 (226)
159 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0052 1.1E-07 63.4 7.8 103 198-302 69-183 (274)
160 PRK14954 DNA polymerase III su 96.7 0.012 2.6E-07 68.5 11.6 46 175-221 16-61 (620)
161 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0038 8.1E-08 75.9 7.7 45 175-221 187-231 (852)
162 PF05621 TniB: Bacterial TniB 96.6 0.016 3.5E-07 60.2 11.1 114 173-294 32-156 (302)
163 PRK09112 DNA polymerase III su 96.6 0.032 6.9E-07 60.6 14.0 48 173-221 21-68 (351)
164 COG1373 Predicted ATPase (AAA+ 96.6 0.012 2.6E-07 65.3 10.9 224 182-447 24-271 (398)
165 CHL00095 clpC Clp protease ATP 96.6 0.0079 1.7E-07 73.4 10.3 133 174-320 508-661 (821)
166 PRK09111 DNA polymerase III su 96.6 0.016 3.5E-07 67.3 12.1 47 174-221 23-69 (598)
167 TIGR02639 ClpA ATP-dependent C 96.6 0.0049 1.1E-07 74.2 8.2 45 175-221 182-226 (731)
168 cd01393 recA_like RecA is a b 96.6 0.015 3.3E-07 59.4 10.7 99 190-293 11-124 (226)
169 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0053 1.1E-07 75.1 8.3 45 175-221 173-217 (852)
170 PRK06620 hypothetical protein; 96.6 0.0081 1.7E-07 60.6 8.3 49 173-221 15-67 (214)
171 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0065 1.4E-07 73.8 8.9 47 174-220 565-618 (852)
172 COG5238 RNA1 Ran GTPase-activa 96.5 0.0003 6.5E-09 70.1 -2.0 238 511-770 29-314 (388)
173 PRK08939 primosomal protein Dn 96.5 0.0093 2E-07 63.5 9.0 118 179-320 135-260 (306)
174 PRK09361 radB DNA repair and r 96.5 0.0084 1.8E-07 61.2 8.4 99 190-292 15-116 (225)
175 PRK06921 hypothetical protein; 96.5 0.0068 1.5E-07 63.2 7.7 37 198-236 117-154 (266)
176 PRK14950 DNA polymerase III su 96.5 0.0096 2.1E-07 69.7 9.7 134 175-320 16-159 (585)
177 TIGR00763 lon ATP-dependent pr 96.5 0.018 3.9E-07 69.8 12.2 53 174-228 319-375 (775)
178 PRK14959 DNA polymerase III su 96.5 0.026 5.7E-07 65.0 12.7 133 175-320 16-158 (624)
179 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0026 5.7E-08 68.0 4.3 47 175-221 51-101 (361)
180 PRK14087 dnaA chromosomal repl 96.4 0.0082 1.8E-07 67.6 8.3 123 176-320 117-248 (450)
181 PTZ00361 26 proteosome regulat 96.4 0.0069 1.5E-07 67.4 7.6 52 175-228 183-245 (438)
182 PRK14971 DNA polymerase III su 96.4 0.027 5.9E-07 65.9 12.7 45 175-220 17-61 (614)
183 PRK12422 chromosomal replicati 96.4 0.007 1.5E-07 68.0 7.6 99 198-320 141-244 (445)
184 PF13207 AAA_17: AAA domain; P 96.4 0.0019 4.2E-08 58.6 2.6 21 200-220 1-21 (121)
185 PRK10865 protein disaggregatio 96.4 0.02 4.3E-07 69.9 11.9 47 174-220 567-620 (857)
186 KOG2123 Uncharacterized conser 96.4 0.00049 1.1E-08 68.9 -1.6 63 534-597 35-98 (388)
187 PHA00729 NTP-binding motif con 96.4 0.0093 2E-07 59.7 7.4 32 187-220 8-39 (226)
188 TIGR03346 chaperone_ClpB ATP-d 96.4 0.019 4.2E-07 70.3 11.5 47 174-220 564-617 (852)
189 PRK08451 DNA polymerase III su 96.3 0.041 9E-07 62.6 13.0 45 175-220 14-58 (535)
190 CHL00176 ftsH cell division pr 96.3 0.012 2.6E-07 68.9 8.9 47 175-221 183-239 (638)
191 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.013 2.9E-07 60.2 8.4 102 191-293 12-125 (235)
192 TIGR02237 recomb_radB DNA repa 96.3 0.017 3.6E-07 58.3 9.0 54 191-247 5-58 (209)
193 PRK11034 clpA ATP-dependent Cl 96.3 0.0081 1.8E-07 71.6 7.4 46 175-220 458-510 (758)
194 PRK14953 DNA polymerase III su 96.3 0.051 1.1E-06 61.8 13.5 45 175-220 16-60 (486)
195 PRK11034 clpA ATP-dependent Cl 96.3 0.01 2.2E-07 70.7 8.2 45 175-221 186-230 (758)
196 PRK06696 uridine kinase; Valid 96.3 0.0052 1.1E-07 62.6 5.1 42 179-220 2-44 (223)
197 KOG1644 U2-associated snRNP A' 96.3 0.0065 1.4E-07 58.4 5.1 104 711-818 43-151 (233)
198 cd01120 RecA-like_NTPases RecA 96.3 0.016 3.5E-07 55.5 8.2 40 200-241 1-40 (165)
199 PRK06305 DNA polymerase III su 96.2 0.035 7.5E-07 62.7 11.7 45 175-220 17-61 (451)
200 PF02562 PhoH: PhoH-like prote 96.2 0.004 8.6E-08 61.6 3.7 53 179-235 4-56 (205)
201 KOG1947 Leucine rich repeat pr 96.2 0.0011 2.4E-08 76.3 -0.4 241 531-797 179-441 (482)
202 KOG2123 Uncharacterized conser 96.2 0.00075 1.6E-08 67.6 -1.6 102 538-642 17-128 (388)
203 PRK05541 adenylylsulfate kinas 96.2 0.0083 1.8E-07 58.6 5.7 36 197-234 6-41 (176)
204 KOG2004 Mitochondrial ATP-depe 96.1 0.046 9.9E-07 62.2 11.8 68 172-244 408-479 (906)
205 PRK14086 dnaA chromosomal repl 96.1 0.018 3.8E-07 66.2 8.8 99 198-320 314-419 (617)
206 PRK14965 DNA polymerase III su 96.1 0.045 9.8E-07 63.8 12.4 46 175-221 16-61 (576)
207 PRK06835 DNA replication prote 96.1 0.023 5E-07 61.0 9.2 36 199-236 184-219 (329)
208 PRK07667 uridine kinase; Provi 96.1 0.007 1.5E-07 60.1 4.8 37 184-220 3-39 (193)
209 TIGR00602 rad24 checkpoint pro 96.1 0.016 3.4E-07 67.4 8.2 50 172-221 81-133 (637)
210 PRK07471 DNA polymerase III su 96.1 0.07 1.5E-06 58.3 12.7 47 173-220 17-63 (365)
211 COG1618 Predicted nucleotide k 96.0 0.0051 1.1E-07 56.9 3.2 31 198-230 5-36 (179)
212 PRK15455 PrkA family serine pr 96.0 0.0066 1.4E-07 68.3 4.6 45 176-220 77-125 (644)
213 COG0470 HolB ATPase involved i 96.0 0.057 1.2E-06 58.5 12.0 123 176-320 2-148 (325)
214 KOG2739 Leucine-rich acidic nu 96.0 0.0044 9.5E-08 62.2 2.9 80 535-616 60-149 (260)
215 PF13671 AAA_33: AAA domain; P 96.0 0.013 2.8E-07 55.0 6.0 21 200-220 1-21 (143)
216 PRK07133 DNA polymerase III su 96.0 0.036 7.8E-07 65.0 10.6 45 175-220 18-62 (725)
217 PF01695 IstB_IS21: IstB-like 95.9 0.0041 8.9E-08 60.7 2.3 36 198-235 47-82 (178)
218 COG1484 DnaC DNA replication p 95.9 0.015 3.2E-07 60.3 6.5 76 197-295 104-179 (254)
219 PF13177 DNA_pol3_delta2: DNA 95.9 0.1 2.2E-06 50.1 11.7 118 179-322 1-143 (162)
220 PRK14948 DNA polymerase III su 95.9 0.077 1.7E-06 62.2 12.8 137 175-320 16-160 (620)
221 COG0542 clpA ATP-binding subun 95.9 0.015 3.2E-07 68.2 6.7 118 174-308 490-620 (786)
222 TIGR01241 FtsH_fam ATP-depende 95.9 0.048 1E-06 62.8 10.9 47 175-221 55-111 (495)
223 PRK06647 DNA polymerase III su 95.8 0.1 2.2E-06 60.4 13.2 46 175-221 16-61 (563)
224 PRK09270 nucleoside triphospha 95.8 0.046 9.9E-07 55.9 9.3 26 195-220 30-55 (229)
225 cd01131 PilT Pilus retraction 95.8 0.024 5.2E-07 56.5 7.0 109 199-323 2-111 (198)
226 cd01394 radB RadB. The archaea 95.8 0.049 1.1E-06 55.3 9.4 51 189-241 10-60 (218)
227 PRK08233 hypothetical protein; 95.7 0.03 6.6E-07 54.9 7.6 24 198-221 3-26 (182)
228 COG0593 DnaA ATPase involved i 95.7 0.03 6.5E-07 61.1 8.0 125 173-320 86-217 (408)
229 PRK05563 DNA polymerase III su 95.7 0.13 2.8E-06 59.7 13.7 45 175-220 16-60 (559)
230 TIGR02640 gas_vesic_GvpN gas v 95.7 0.079 1.7E-06 55.4 10.9 56 182-246 9-64 (262)
231 PRK10787 DNA-binding ATP-depen 95.7 0.022 4.8E-07 68.5 7.6 49 172-220 319-371 (784)
232 TIGR01243 CDC48 AAA family ATP 95.7 0.023 5E-07 68.7 7.8 47 175-221 178-235 (733)
233 KOG0735 AAA+-type ATPase [Post 95.7 0.036 7.8E-07 62.9 8.5 96 174-293 407-504 (952)
234 PF08423 Rad51: Rad51; InterP 95.6 0.023 4.9E-07 59.0 6.3 65 189-254 29-97 (256)
235 KOG0991 Replication factor C, 95.6 0.027 5.9E-07 55.2 6.3 45 174-220 26-70 (333)
236 PF14532 Sigma54_activ_2: Sigm 95.6 0.021 4.6E-07 53.2 5.5 44 178-221 1-44 (138)
237 COG2255 RuvB Holliday junction 95.6 0.011 2.3E-07 60.1 3.5 48 174-221 25-75 (332)
238 KOG0734 AAA+-type ATPase conta 95.6 0.097 2.1E-06 57.6 11.0 49 175-223 304-362 (752)
239 PF07693 KAP_NTPase: KAP famil 95.6 0.1 2.2E-06 56.7 11.6 72 181-254 2-81 (325)
240 PRK04296 thymidine kinase; Pro 95.6 0.02 4.3E-07 56.7 5.4 114 199-323 3-118 (190)
241 PRK04301 radA DNA repair and r 95.5 0.043 9.2E-07 59.2 8.3 65 189-254 93-161 (317)
242 TIGR02858 spore_III_AA stage I 95.5 0.15 3.2E-06 53.2 11.9 133 183-325 97-233 (270)
243 COG2607 Predicted ATPase (AAA+ 95.5 0.13 2.7E-06 51.2 10.5 117 172-321 57-183 (287)
244 PRK13695 putative NTPase; Prov 95.5 0.015 3.2E-07 56.8 4.3 22 200-221 2-23 (174)
245 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.14 3E-06 48.6 10.5 120 199-321 3-138 (159)
246 PRK11608 pspF phage shock prot 95.5 0.055 1.2E-06 58.5 8.9 46 175-220 6-51 (326)
247 PLN03186 DNA repair protein RA 95.4 0.071 1.5E-06 57.5 9.6 66 189-255 114-183 (342)
248 PF00448 SRP54: SRP54-type pro 95.4 0.03 6.6E-07 55.5 6.3 55 198-254 1-56 (196)
249 PRK04040 adenylate kinase; Pro 95.4 0.03 6.5E-07 55.2 6.2 23 198-220 2-24 (188)
250 cd03238 ABC_UvrA The excision 95.4 0.11 2.4E-06 50.5 10.0 118 198-325 21-153 (176)
251 COG4608 AppF ABC-type oligopep 95.4 0.051 1.1E-06 55.4 7.7 124 198-325 39-174 (268)
252 cd03214 ABC_Iron-Siderophores_ 95.3 0.07 1.5E-06 52.3 8.5 121 198-323 25-160 (180)
253 cd03247 ABCC_cytochrome_bd The 95.3 0.052 1.1E-06 53.1 7.5 24 198-221 28-51 (178)
254 COG0572 Udk Uridine kinase [Nu 95.3 0.029 6.3E-07 55.5 5.5 25 196-220 6-30 (218)
255 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.11 2.4E-06 52.9 9.8 124 199-325 31-203 (254)
256 PRK06002 fliI flagellum-specif 95.3 0.062 1.3E-06 59.5 8.5 92 198-294 165-265 (450)
257 TIGR03499 FlhF flagellar biosy 95.2 0.059 1.3E-06 56.9 8.1 41 197-237 193-233 (282)
258 PRK05703 flhF flagellar biosyn 95.2 0.28 6E-06 54.9 13.7 40 198-237 221-260 (424)
259 KOG0733 Nuclear AAA ATPase (VC 95.2 0.049 1.1E-06 60.9 7.5 94 175-294 190-293 (802)
260 PRK06547 hypothetical protein; 95.2 0.024 5.3E-07 54.9 4.6 33 187-221 6-38 (172)
261 PRK11889 flhF flagellar biosyn 95.2 0.23 5E-06 53.9 12.2 24 197-220 240-263 (436)
262 PRK15429 formate hydrogenlyase 95.2 0.075 1.6E-06 63.8 9.8 47 175-221 376-422 (686)
263 PF13238 AAA_18: AAA domain; P 95.2 0.012 2.6E-07 53.9 2.4 21 201-221 1-21 (129)
264 TIGR02012 tigrfam_recA protein 95.2 0.065 1.4E-06 57.0 8.1 91 194-293 51-143 (321)
265 cd03115 SRP The signal recogni 95.1 0.12 2.5E-06 50.3 9.4 21 200-220 2-22 (173)
266 TIGR00064 ftsY signal recognit 95.1 0.098 2.1E-06 54.8 9.3 40 196-237 70-109 (272)
267 PF12061 DUF3542: Protein of u 95.1 0.064 1.4E-06 54.8 7.4 102 3-122 296-400 (402)
268 COG0466 Lon ATP-dependent Lon 95.1 0.023 5E-07 64.9 4.6 55 172-228 320-378 (782)
269 PF00006 ATP-synt_ab: ATP synt 95.1 0.036 7.8E-07 55.6 5.6 88 199-292 16-114 (215)
270 PRK08058 DNA polymerase III su 95.1 0.19 4.2E-06 54.4 11.6 136 176-322 6-151 (329)
271 TIGR00390 hslU ATP-dependent p 95.1 0.05 1.1E-06 59.4 6.9 78 174-253 11-104 (441)
272 TIGR02238 recomb_DMC1 meiotic 95.0 0.12 2.5E-06 55.4 9.5 66 189-255 87-156 (313)
273 TIGR02236 recomb_radA DNA repa 95.0 0.088 1.9E-06 56.6 8.8 65 189-254 86-154 (310)
274 cd00983 recA RecA is a bacter 95.0 0.072 1.6E-06 56.7 7.9 91 194-293 51-143 (325)
275 TIGR02239 recomb_RAD51 DNA rep 95.0 0.11 2.4E-06 55.6 9.4 68 187-255 85-156 (316)
276 PF00485 PRK: Phosphoribulokin 95.0 0.017 3.6E-07 57.5 2.9 83 200-287 1-87 (194)
277 KOG0741 AAA+-type ATPase [Post 95.0 0.081 1.7E-06 58.1 8.1 102 197-325 537-655 (744)
278 cd03246 ABCC_Protease_Secretio 95.0 0.11 2.5E-06 50.4 8.7 23 198-220 28-50 (173)
279 PRK10867 signal recognition pa 95.0 0.11 2.4E-06 57.9 9.4 24 197-220 99-122 (433)
280 PTZ00301 uridine kinase; Provi 95.0 0.027 5.8E-07 56.4 4.3 23 198-220 3-25 (210)
281 PF13604 AAA_30: AAA domain; P 95.0 0.048 1E-06 54.2 6.0 116 185-323 7-133 (196)
282 PRK14974 cell division protein 94.9 0.27 5.9E-06 52.9 12.1 55 197-255 139-196 (336)
283 TIGR01425 SRP54_euk signal rec 94.9 0.4 8.8E-06 53.1 13.5 24 197-220 99-122 (429)
284 PRK05480 uridine/cytidine kina 94.9 0.021 4.5E-07 57.6 3.3 25 197-221 5-29 (209)
285 PRK08972 fliI flagellum-specif 94.9 0.087 1.9E-06 58.1 8.2 93 198-294 162-263 (444)
286 TIGR02974 phageshock_pspF psp 94.8 0.11 2.3E-06 56.2 8.8 45 177-221 1-45 (329)
287 PRK14722 flhF flagellar biosyn 94.8 0.18 3.9E-06 54.8 10.5 88 198-295 137-227 (374)
288 cd02019 NK Nucleoside/nucleoti 94.8 0.019 4.1E-07 46.2 2.3 22 200-221 1-22 (69)
289 PRK05201 hslU ATP-dependent pr 94.8 0.057 1.2E-06 59.0 6.6 78 174-253 14-107 (443)
290 PRK09354 recA recombinase A; P 94.8 0.096 2.1E-06 56.3 8.2 96 189-293 50-148 (349)
291 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.21 4.6E-06 46.9 9.7 102 198-324 26-130 (144)
292 PLN00020 ribulose bisphosphate 94.8 0.035 7.5E-07 59.2 4.6 26 196-221 146-171 (413)
293 PRK07399 DNA polymerase III su 94.8 0.21 4.5E-06 53.5 10.7 45 175-220 4-48 (314)
294 PLN03187 meiotic recombination 94.7 0.16 3.6E-06 54.7 9.8 65 190-255 118-186 (344)
295 PRK06762 hypothetical protein; 94.7 0.023 5E-07 54.9 3.0 23 198-220 2-24 (166)
296 cd03223 ABCD_peroxisomal_ALDP 94.7 0.27 5.8E-06 47.4 10.4 24 198-221 27-50 (166)
297 PRK13531 regulatory ATPase Rav 94.7 0.034 7.3E-07 61.9 4.6 44 174-221 19-62 (498)
298 CHL00195 ycf46 Ycf46; Provisio 94.7 0.1 2.2E-06 59.2 8.5 47 175-221 228-282 (489)
299 cd03222 ABC_RNaseL_inhibitor T 94.7 0.14 2.9E-06 49.9 8.3 23 198-220 25-47 (177)
300 PRK00771 signal recognition pa 94.7 0.16 3.4E-06 56.7 9.8 57 197-255 94-151 (437)
301 PRK06067 flagellar accessory p 94.7 0.14 3.1E-06 52.5 9.0 97 190-293 17-130 (234)
302 PRK12723 flagellar biosynthesi 94.7 0.45 9.8E-06 52.3 13.1 89 197-294 173-265 (388)
303 cd03216 ABC_Carb_Monos_I This 94.6 0.076 1.7E-06 51.1 6.4 113 198-323 26-144 (163)
304 TIGR00235 udk uridine kinase. 94.6 0.028 6.1E-07 56.5 3.5 24 197-220 5-28 (207)
305 TIGR01243 CDC48 AAA family ATP 94.6 0.12 2.6E-06 62.5 9.5 47 175-221 453-510 (733)
306 TIGR00959 ffh signal recogniti 94.6 0.27 5.9E-06 54.7 11.3 24 197-220 98-121 (428)
307 PF00560 LRR_1: Leucine Rich R 94.6 0.013 2.8E-07 35.2 0.5 18 564-581 1-18 (22)
308 PRK03839 putative kinase; Prov 94.5 0.024 5.3E-07 55.6 2.8 22 200-221 2-23 (180)
309 PRK05022 anaerobic nitric oxid 94.5 0.12 2.6E-06 59.7 8.8 49 173-221 185-233 (509)
310 TIGR01817 nifA Nif-specific re 94.5 0.14 3E-06 59.7 9.4 49 173-221 194-242 (534)
311 TIGR00150 HI0065_YjeE ATPase, 94.5 0.052 1.1E-06 49.7 4.6 40 182-221 6-45 (133)
312 cd02025 PanK Pantothenate kina 94.5 0.12 2.7E-06 52.3 7.8 21 200-220 1-21 (220)
313 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3E-07 35.0 0.6 20 588-607 1-20 (22)
314 COG1875 NYN ribonuclease and A 94.5 0.15 3.2E-06 53.8 8.3 139 174-323 220-390 (436)
315 KOG0989 Replication factor C, 94.4 0.13 2.7E-06 53.1 7.5 129 173-320 34-168 (346)
316 PRK12678 transcription termina 94.4 0.049 1.1E-06 61.2 5.1 92 198-293 416-513 (672)
317 COG0468 RecA RecA/RadA recombi 94.4 0.19 4.2E-06 52.2 9.1 95 193-293 55-151 (279)
318 PRK12597 F0F1 ATP synthase sub 94.4 0.093 2E-06 58.6 7.2 93 198-293 143-247 (461)
319 cd01121 Sms Sms (bacterial rad 94.4 0.13 2.7E-06 56.4 8.1 96 187-292 71-167 (372)
320 TIGR01360 aden_kin_iso1 adenyl 94.4 0.031 6.7E-07 55.2 3.2 24 197-220 2-25 (188)
321 PRK08927 fliI flagellum-specif 94.4 0.11 2.3E-06 57.6 7.5 94 197-294 157-259 (442)
322 PRK08149 ATP synthase SpaL; Va 94.4 0.12 2.5E-06 57.2 7.8 91 198-294 151-252 (428)
323 PRK12724 flagellar biosynthesi 94.4 0.17 3.6E-06 55.6 8.8 23 198-220 223-245 (432)
324 PTZ00035 Rad51 protein; Provis 94.3 0.32 7E-06 52.6 11.0 66 189-255 109-178 (337)
325 PRK06217 hypothetical protein; 94.3 0.067 1.4E-06 52.6 5.3 22 200-221 3-24 (183)
326 PF07726 AAA_3: ATPase family 94.3 0.023 4.9E-07 51.2 1.7 27 201-229 2-28 (131)
327 PRK00625 shikimate kinase; Pro 94.3 0.029 6.2E-07 54.4 2.5 21 200-220 2-22 (173)
328 COG1428 Deoxynucleoside kinase 94.2 0.029 6.3E-07 54.8 2.4 24 198-221 4-27 (216)
329 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.14 2.9E-06 49.0 7.1 112 199-324 26-143 (157)
330 cd01135 V_A-ATPase_B V/A-type 94.2 0.2 4.4E-06 51.8 8.6 106 198-303 69-187 (276)
331 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.056 1.2E-06 54.5 4.6 122 198-325 29-158 (213)
332 PRK05439 pantothenate kinase; 94.2 0.21 4.6E-06 52.9 9.0 82 195-284 83-166 (311)
333 cd03228 ABCC_MRP_Like The MRP 94.2 0.15 3.3E-06 49.4 7.5 122 198-324 28-158 (171)
334 PF08433 KTI12: Chromatin asso 94.2 0.084 1.8E-06 55.1 5.9 23 199-221 2-24 (270)
335 PRK12727 flagellar biosynthesi 94.2 0.21 4.6E-06 56.3 9.3 24 197-220 349-372 (559)
336 TIGR03498 FliI_clade3 flagella 94.1 0.14 3.1E-06 56.6 7.9 93 198-294 140-241 (418)
337 COG1102 Cmk Cytidylate kinase 94.1 0.054 1.2E-06 50.3 3.8 43 200-255 2-44 (179)
338 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.15 3.3E-06 52.7 7.4 102 198-305 69-184 (274)
339 PF00158 Sigma54_activat: Sigm 94.0 0.16 3.5E-06 48.9 7.2 45 177-221 1-45 (168)
340 PTZ00185 ATPase alpha subunit; 94.0 0.2 4.3E-06 55.9 8.6 93 198-294 189-300 (574)
341 TIGR00554 panK_bact pantothena 94.0 0.17 3.7E-06 53.2 7.8 25 196-220 60-84 (290)
342 cd03213 ABCG_EPDR ABCG transpo 93.9 0.49 1.1E-05 47.0 10.6 24 198-221 35-58 (194)
343 PF01583 APS_kinase: Adenylyls 93.9 0.068 1.5E-06 50.4 4.1 36 198-235 2-37 (156)
344 cd01122 GP4d_helicase GP4d_hel 93.9 0.49 1.1E-05 49.7 11.2 53 198-254 30-83 (271)
345 PRK09280 F0F1 ATP synthase sub 93.9 0.16 3.6E-06 56.5 7.7 95 198-293 144-248 (463)
346 KOG0744 AAA+-type ATPase [Post 93.9 0.17 3.6E-06 52.5 7.1 79 198-292 177-259 (423)
347 PRK07594 type III secretion sy 93.9 0.16 3.5E-06 56.2 7.7 49 197-249 154-203 (433)
348 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.49 1.1E-05 49.2 10.8 24 198-221 26-49 (255)
349 cd02027 APSK Adenosine 5'-phos 93.8 0.43 9.4E-06 45.0 9.5 21 200-220 1-21 (149)
350 PF03308 ArgK: ArgK protein; 93.8 0.081 1.7E-06 53.7 4.6 64 183-246 14-77 (266)
351 KOG2228 Origin recognition com 93.8 0.31 6.8E-06 50.9 8.9 143 174-321 23-182 (408)
352 PRK06936 type III secretion sy 93.7 0.22 4.7E-06 55.2 8.3 92 197-294 161-263 (439)
353 cd01129 PulE-GspE PulE/GspE Th 93.7 0.26 5.6E-06 51.5 8.6 106 178-301 62-167 (264)
354 cd02024 NRK1 Nicotinamide ribo 93.7 0.038 8.2E-07 54.1 2.2 22 200-221 1-22 (187)
355 cd02023 UMPK Uridine monophosp 93.7 0.038 8.2E-07 55.1 2.3 21 200-220 1-21 (198)
356 cd01136 ATPase_flagellum-secre 93.7 0.3 6.5E-06 52.2 9.0 91 198-294 69-170 (326)
357 PRK05707 DNA polymerase III su 93.6 0.65 1.4E-05 50.1 11.6 41 282-322 105-147 (328)
358 PLN02318 phosphoribulokinase/u 93.6 0.082 1.8E-06 60.0 4.8 33 188-220 55-87 (656)
359 KOG1532 GTPase XAB1, interacts 93.6 0.05 1.1E-06 54.8 2.7 59 196-256 17-86 (366)
360 TIGR01359 UMP_CMP_kin_fam UMP- 93.6 0.041 9E-07 54.0 2.2 21 200-220 1-21 (183)
361 PRK00131 aroK shikimate kinase 93.6 0.052 1.1E-06 52.8 2.9 23 198-220 4-26 (175)
362 PRK00889 adenylylsulfate kinas 93.5 0.065 1.4E-06 52.3 3.5 25 197-221 3-27 (175)
363 PRK09099 type III secretion sy 93.5 0.2 4.4E-06 55.7 7.7 94 197-294 162-264 (441)
364 COG2019 AdkA Archaeal adenylat 93.5 0.062 1.3E-06 50.2 3.0 47 198-256 4-50 (189)
365 COG0003 ArsA Predicted ATPase 93.5 0.1 2.2E-06 55.7 5.1 49 198-248 2-50 (322)
366 PRK13947 shikimate kinase; Pro 93.5 0.047 1E-06 53.0 2.5 21 200-220 3-23 (171)
367 TIGR02322 phosphon_PhnN phosph 93.5 0.053 1.2E-06 53.1 2.9 23 199-221 2-24 (179)
368 COG2884 FtsE Predicted ATPase 93.5 0.39 8.5E-06 46.2 8.3 52 274-325 146-201 (223)
369 PRK05688 fliI flagellum-specif 93.5 0.22 4.9E-06 55.3 7.9 93 198-294 168-269 (451)
370 KOG1514 Origin recognition com 93.4 0.73 1.6E-05 52.9 11.8 135 174-318 395-546 (767)
371 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.52 1.1E-05 48.1 10.1 48 190-239 12-59 (229)
372 PRK05922 type III secretion sy 93.4 0.29 6.4E-06 54.2 8.6 99 198-302 157-267 (434)
373 TIGR01040 V-ATPase_V1_B V-type 93.4 0.21 4.5E-06 55.4 7.3 105 198-302 141-267 (466)
374 COG1703 ArgK Putative periplas 93.3 0.087 1.9E-06 54.2 4.1 67 184-250 37-103 (323)
375 COG1419 FlhF Flagellar GTP-bin 93.3 0.4 8.7E-06 52.0 9.3 39 198-237 203-242 (407)
376 COG1936 Predicted nucleotide k 93.3 0.062 1.3E-06 50.7 2.8 20 200-219 2-21 (180)
377 TIGR00764 lon_rel lon-related 93.3 0.19 4.2E-06 58.8 7.5 75 174-255 17-92 (608)
378 PRK13949 shikimate kinase; Pro 93.3 0.055 1.2E-06 52.4 2.6 22 200-221 3-24 (169)
379 PRK10751 molybdopterin-guanine 93.3 0.075 1.6E-06 51.2 3.4 25 197-221 5-29 (173)
380 cd03282 ABC_MSH4_euk MutS4 hom 93.3 0.11 2.3E-06 52.0 4.7 119 198-325 29-155 (204)
381 cd03243 ABC_MutS_homologs The 93.3 0.062 1.3E-06 53.8 3.0 22 199-220 30-51 (202)
382 PTZ00088 adenylate kinase 1; P 93.3 0.087 1.9E-06 53.6 4.0 20 201-220 9-28 (229)
383 cd02028 UMPK_like Uridine mono 93.2 0.057 1.2E-06 52.8 2.6 21 200-220 1-21 (179)
384 cd02020 CMPK Cytidine monophos 93.2 0.052 1.1E-06 51.0 2.3 21 200-220 1-21 (147)
385 PRK10733 hflB ATP-dependent me 93.2 0.18 3.9E-06 59.8 7.2 47 175-221 152-208 (644)
386 COG0467 RAD55 RecA-superfamily 93.2 0.11 2.4E-06 54.3 4.8 45 193-239 18-62 (260)
387 COG0542 clpA ATP-binding subun 93.2 0.1 2.2E-06 61.5 4.8 44 175-220 170-213 (786)
388 PF14516 AAA_35: AAA-like doma 93.2 0.74 1.6E-05 49.9 11.4 118 171-295 7-139 (331)
389 PRK10463 hydrogenase nickel in 93.2 0.17 3.6E-06 52.9 6.0 25 196-220 102-126 (290)
390 PRK07721 fliI flagellum-specif 93.2 0.28 6.2E-06 54.7 8.3 25 197-221 157-181 (438)
391 PF00910 RNA_helicase: RNA hel 93.2 0.045 9.9E-07 48.4 1.7 21 201-221 1-21 (107)
392 KOG3864 Uncharacterized conser 93.1 0.012 2.6E-07 56.7 -2.2 61 758-818 124-187 (221)
393 TIGR03575 selen_PSTK_euk L-ser 93.1 0.26 5.7E-06 52.9 7.6 21 201-221 2-22 (340)
394 KOG1969 DNA replication checkp 93.1 0.23 5.1E-06 56.9 7.4 73 197-295 325-399 (877)
395 PF13481 AAA_25: AAA domain; P 93.1 0.11 2.3E-06 51.6 4.4 41 199-239 33-81 (193)
396 PRK09519 recA DNA recombinatio 93.1 0.31 6.6E-06 57.9 8.7 96 189-293 50-148 (790)
397 TIGR03263 guanyl_kin guanylate 93.1 0.071 1.5E-06 52.2 3.0 22 199-220 2-23 (180)
398 TIGR03305 alt_F1F0_F1_bet alte 93.1 0.22 4.9E-06 55.3 7.1 96 198-294 138-243 (449)
399 cd02021 GntK Gluconate kinase 93.1 0.059 1.3E-06 51.0 2.4 22 200-221 1-22 (150)
400 PRK14738 gmk guanylate kinase; 93.1 0.08 1.7E-06 53.1 3.4 30 191-220 6-35 (206)
401 PF05659 RPW8: Arabidopsis bro 93.0 0.51 1.1E-05 44.1 8.4 106 3-127 9-115 (147)
402 COG4088 Predicted nucleotide k 93.0 0.25 5.4E-06 47.9 6.4 22 199-220 2-23 (261)
403 PF07728 AAA_5: AAA domain (dy 93.0 0.15 3.3E-06 47.4 5.0 41 201-247 2-43 (139)
404 PRK03846 adenylylsulfate kinas 93.0 0.081 1.8E-06 52.7 3.3 25 196-220 22-46 (198)
405 PRK06820 type III secretion sy 92.9 0.48 1E-05 52.7 9.5 38 198-239 163-200 (440)
406 TIGR02788 VirB11 P-type DNA tr 92.9 0.23 4.9E-06 53.3 6.9 111 198-322 144-254 (308)
407 COG1223 Predicted ATPase (AAA+ 92.9 0.13 2.9E-06 51.4 4.6 47 175-221 121-174 (368)
408 PF03205 MobB: Molybdopterin g 92.9 0.071 1.5E-06 49.7 2.6 38 199-238 1-39 (140)
409 TIGR02868 CydC thiol reductant 92.9 0.63 1.4E-05 54.2 11.2 25 197-221 360-384 (529)
410 PRK07196 fliI flagellum-specif 92.9 0.34 7.4E-06 53.8 8.2 24 197-220 154-177 (434)
411 COG2842 Uncharacterized ATPase 92.9 0.63 1.4E-05 48.1 9.5 117 175-306 72-190 (297)
412 PF12775 AAA_7: P-loop contain 92.9 0.063 1.4E-06 56.2 2.4 34 184-220 22-55 (272)
413 PRK14721 flhF flagellar biosyn 92.8 0.41 8.9E-06 53.0 8.7 23 198-220 191-213 (420)
414 COG3640 CooC CO dehydrogenase 92.8 0.16 3.4E-06 50.5 4.8 42 200-243 2-44 (255)
415 PRK12726 flagellar biosynthesi 92.8 0.56 1.2E-05 50.8 9.3 90 197-294 205-296 (407)
416 cd00227 CPT Chloramphenicol (C 92.8 0.076 1.6E-06 51.8 2.7 23 199-221 3-25 (175)
417 PF08477 Miro: Miro-like prote 92.8 0.083 1.8E-06 47.6 2.8 23 201-223 2-24 (119)
418 PF06309 Torsin: Torsin; Inte 92.8 0.19 4.2E-06 45.2 4.9 48 174-221 24-76 (127)
419 smart00534 MUTSac ATPase domai 92.8 0.59 1.3E-05 45.9 9.1 21 200-220 1-21 (185)
420 PRK13765 ATP-dependent proteas 92.8 0.18 3.9E-06 59.0 6.1 75 175-255 31-105 (637)
421 PRK13975 thymidylate kinase; P 92.7 0.081 1.8E-06 52.6 2.9 23 199-221 3-25 (196)
422 PRK14530 adenylate kinase; Pro 92.7 0.077 1.7E-06 53.7 2.7 21 200-220 5-25 (215)
423 TIGR01420 pilT_fam pilus retra 92.7 0.23 5E-06 54.1 6.5 111 198-323 122-232 (343)
424 PRK09435 membrane ATPase/prote 92.6 0.17 3.7E-06 54.3 5.3 37 184-220 42-78 (332)
425 cd00464 SK Shikimate kinase (S 92.6 0.078 1.7E-06 50.3 2.5 20 201-220 2-21 (154)
426 PRK13948 shikimate kinase; Pro 92.6 0.091 2E-06 51.4 3.0 24 197-220 9-32 (182)
427 cd01672 TMPK Thymidine monopho 92.6 0.21 4.5E-06 49.6 5.7 22 200-221 2-23 (200)
428 TIGR01041 ATP_syn_B_arch ATP s 92.6 0.29 6.3E-06 54.8 7.2 105 198-302 141-258 (458)
429 COG1124 DppF ABC-type dipeptid 92.5 0.14 3.1E-06 51.1 4.2 23 198-220 33-55 (252)
430 cd01878 HflX HflX subfamily. 92.5 0.29 6.2E-06 49.0 6.6 25 198-222 41-65 (204)
431 TIGR03497 FliI_clade2 flagella 92.5 0.38 8.2E-06 53.4 7.9 25 197-221 136-160 (413)
432 cd00071 GMPK Guanosine monopho 92.5 0.093 2E-06 48.8 2.8 22 200-221 1-22 (137)
433 COG0563 Adk Adenylate kinase a 92.5 0.084 1.8E-06 51.4 2.5 22 200-221 2-23 (178)
434 COG0464 SpoVK ATPases of the A 92.5 0.22 4.7E-06 57.5 6.3 94 175-294 242-346 (494)
435 PRK10078 ribose 1,5-bisphospho 92.5 0.098 2.1E-06 51.6 3.0 23 199-221 3-25 (186)
436 PRK11388 DNA-binding transcrip 92.4 0.31 6.7E-06 58.2 7.8 47 175-221 325-371 (638)
437 PRK12339 2-phosphoglycerate ki 92.4 0.11 2.3E-06 51.6 3.2 24 198-221 3-26 (197)
438 cd01130 VirB11-like_ATPase Typ 92.4 0.17 3.7E-06 49.9 4.7 110 182-304 12-121 (186)
439 PF08298 AAA_PrkA: PrkA AAA do 92.4 0.19 4.1E-06 53.5 5.2 47 174-220 60-110 (358)
440 COG0237 CoaE Dephospho-CoA kin 92.4 0.1 2.3E-06 51.6 3.1 23 198-220 2-24 (201)
441 KOG0473 Leucine-rich repeat pr 92.4 0.0067 1.4E-07 59.4 -5.1 88 534-622 36-123 (326)
442 PRK10820 DNA-binding transcrip 92.4 0.49 1.1E-05 54.7 9.1 46 175-220 204-249 (520)
443 KOG3864 Uncharacterized conser 92.4 0.015 3.3E-07 56.0 -2.7 88 710-797 101-190 (221)
444 PRK11823 DNA repair protein Ra 92.3 0.39 8.5E-06 54.2 8.0 52 186-239 68-119 (446)
445 PRK05057 aroK shikimate kinase 92.3 0.099 2.1E-06 50.8 2.8 24 198-221 4-27 (172)
446 PRK04328 hypothetical protein; 92.3 0.48 1E-05 49.0 8.1 48 190-239 15-62 (249)
447 TIGR00708 cobA cob(I)alamin ad 92.3 0.78 1.7E-05 44.1 8.7 119 198-321 5-140 (173)
448 cd03217 ABC_FeS_Assembly ABC-t 92.3 0.55 1.2E-05 46.8 8.2 24 198-221 26-49 (200)
449 TIGR03496 FliI_clade1 flagella 92.3 0.35 7.6E-06 53.6 7.4 91 198-294 137-238 (411)
450 TIGR01287 nifH nitrogenase iro 92.3 0.091 2E-06 55.4 2.8 22 199-220 1-22 (275)
451 PF07724 AAA_2: AAA domain (Cd 92.3 0.2 4.3E-06 48.5 4.8 39 198-238 3-42 (171)
452 PF00625 Guanylate_kin: Guanyl 92.3 0.14 2.9E-06 50.4 3.8 37 198-236 2-38 (183)
453 PRK00300 gmk guanylate kinase; 92.2 0.1 2.2E-06 52.4 2.9 24 198-221 5-28 (205)
454 CHL00059 atpA ATP synthase CF1 92.2 0.6 1.3E-05 52.2 9.0 97 198-302 141-253 (485)
455 PRK13946 shikimate kinase; Pro 92.2 0.098 2.1E-06 51.5 2.7 23 198-220 10-32 (184)
456 PRK14723 flhF flagellar biosyn 92.2 0.5 1.1E-05 56.0 8.8 24 198-221 185-208 (767)
457 cd01125 repA Hexameric Replica 92.1 0.61 1.3E-05 48.0 8.6 21 200-220 3-23 (239)
458 PRK15064 ABC transporter ATP-b 92.1 1.3 2.9E-05 51.5 12.4 24 198-221 27-50 (530)
459 PLN02924 thymidylate kinase 92.1 0.33 7.1E-06 49.1 6.4 24 198-221 16-39 (220)
460 KOG0727 26S proteasome regulat 92.1 0.32 6.9E-06 48.4 5.9 49 173-221 153-212 (408)
461 PF03266 NTPase_1: NTPase; In 92.1 0.099 2.1E-06 50.4 2.5 21 201-221 2-22 (168)
462 PRK13545 tagH teichoic acids e 92.1 1.1 2.4E-05 51.0 11.0 24 198-221 50-73 (549)
463 TIGR00750 lao LAO/AO transport 92.1 0.17 3.7E-06 54.0 4.6 37 185-221 21-57 (300)
464 PF13504 LRR_7: Leucine rich r 92.1 0.083 1.8E-06 29.4 1.1 15 588-602 2-16 (17)
465 cd02117 NifH_like This family 92.1 0.11 2.4E-06 52.5 2.9 22 199-220 1-22 (212)
466 TIGR02546 III_secr_ATP type II 92.1 0.63 1.4E-05 51.9 9.1 90 198-293 145-245 (422)
467 COG0714 MoxR-like ATPases [Gen 92.0 0.34 7.4E-06 52.5 6.9 65 174-247 23-87 (329)
468 TIGR00073 hypB hydrogenase acc 92.0 0.12 2.6E-06 52.0 3.1 25 196-220 20-44 (207)
469 PRK06793 fliI flagellum-specif 92.0 1.5 3.2E-05 48.8 11.8 123 198-325 156-290 (432)
470 COG0703 AroK Shikimate kinase 92.0 0.11 2.4E-06 49.6 2.5 27 200-228 4-30 (172)
471 PHA02774 E1; Provisional 91.9 0.49 1.1E-05 53.8 8.0 37 183-220 420-456 (613)
472 KOG1051 Chaperone HSP104 and r 91.9 0.42 9.1E-06 57.2 7.8 115 175-306 562-685 (898)
473 PF00005 ABC_tran: ABC transpo 91.9 0.16 3.6E-06 47.0 3.7 23 199-221 12-34 (137)
474 PRK13230 nitrogenase reductase 91.9 0.12 2.6E-06 54.7 3.1 22 199-220 2-23 (279)
475 TIGR02782 TrbB_P P-type conjug 91.9 0.57 1.2E-05 49.8 8.2 91 199-304 133-225 (299)
476 KOG0729 26S proteasome regulat 91.8 0.86 1.9E-05 45.8 8.6 53 174-228 176-239 (435)
477 TIGR01313 therm_gnt_kin carboh 91.8 0.096 2.1E-06 50.3 2.1 20 201-220 1-20 (163)
478 COG1100 GTPase SAR1 and relate 91.8 0.12 2.5E-06 52.5 2.8 23 199-221 6-28 (219)
479 PRK13232 nifH nitrogenase redu 91.8 0.12 2.6E-06 54.5 2.9 22 199-220 2-23 (273)
480 PRK06761 hypothetical protein; 91.8 0.24 5.2E-06 51.8 5.0 23 199-221 4-26 (282)
481 cd03287 ABC_MSH3_euk MutS3 hom 91.8 0.79 1.7E-05 46.4 8.7 23 198-220 31-53 (222)
482 TIGR00176 mobB molybdopterin-g 91.7 0.11 2.3E-06 49.5 2.3 22 200-221 1-22 (155)
483 KOG0731 AAA+-type ATPase conta 91.7 1.4 3E-05 51.9 11.5 48 175-222 311-368 (774)
484 TIGR01039 atpD ATP synthase, F 91.7 0.5 1.1E-05 52.6 7.7 96 198-294 143-248 (461)
485 PRK15439 autoinducer 2 ABC tra 91.7 1.2 2.5E-05 51.7 11.3 24 198-221 37-60 (510)
486 KOG0733 Nuclear AAA ATPase (VC 91.7 0.36 7.9E-06 54.2 6.5 123 177-325 513-661 (802)
487 COG1066 Sms Predicted ATP-depe 91.7 0.67 1.5E-05 50.0 8.3 101 184-294 79-179 (456)
488 PRK05986 cob(I)alamin adenolsy 91.7 1.1 2.5E-05 43.6 9.3 120 197-321 21-158 (191)
489 KOG0924 mRNA splicing factor A 91.7 1 2.2E-05 51.3 9.8 131 185-325 362-514 (1042)
490 PRK11819 putative ABC transpor 91.7 2.1 4.5E-05 50.2 13.3 120 200-325 35-224 (556)
491 TIGR03877 thermo_KaiC_1 KaiC d 91.6 0.46 9.9E-06 48.9 7.0 56 189-248 12-67 (237)
492 PLN02200 adenylate kinase fami 91.6 0.14 3E-06 52.4 3.1 24 197-220 42-65 (234)
493 PRK04182 cytidylate kinase; Pr 91.6 0.13 2.8E-06 50.3 2.8 22 200-221 2-23 (180)
494 TIGR01026 fliI_yscN ATPase Fli 91.6 0.44 9.5E-06 53.3 7.2 24 198-221 163-186 (440)
495 PRK07960 fliI flagellum-specif 91.6 0.6 1.3E-05 51.9 8.1 25 197-221 174-198 (455)
496 cd04139 RalA_RalB RalA/RalB su 91.6 0.15 3.2E-06 48.7 3.2 22 200-221 2-23 (164)
497 cd00820 PEPCK_HprK Phosphoenol 91.6 0.16 3.6E-06 44.4 3.0 22 198-219 15-36 (107)
498 TIGR02030 BchI-ChlI magnesium 91.5 0.24 5.1E-06 53.5 4.9 44 175-220 4-47 (337)
499 PLN02348 phosphoribulokinase 91.5 0.19 4.2E-06 54.5 4.1 26 195-220 46-71 (395)
500 PRK13409 putative ATPase RIL; 91.5 1.5 3.3E-05 51.4 12.0 24 198-221 99-122 (590)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-87 Score=787.56 Aligned_cols=754 Identities=24% Similarity=0.325 Sum_probs=572.6
Q ss_pred CcchHHHHHHHHHHHhcccccCCchhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccCChhHHHHHHHHH
Q 003154 1 MDINLGLFSERLRRLLAGEEGTLPDAAKEGIQNLHTEIEVVTSWLRDYDYDLAWLLMQIGAAAEDQIHSTDLKAIMKEIN 80 (843)
Q Consensus 1 m~~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~ 80 (843)
|++.++..++|+.+++.++ +..+.+.++++..|+++|..++.+++|+++ ++.....+..|...++
T Consensus 1 ~~~~~s~~~~~~~~~l~~~-~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a--------------~~~~~~~~~~~~e~~~ 65 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRE-SECLDGKDNYILELKENLKALQSALEDLDA--------------KRDDLERRVNWEEDVG 65 (889)
T ss_pred CCeEEEEehhhHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHh--------------hcchHHHHHHHHHHHH
Confidence 7888999999999999999 999999999999999999999999999999 7878889999999999
Q ss_pred HHhhhhhhHHhhhhccccccccc-----C------C---CchHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh
Q 003154 81 RFAYESEKVIDTFIIPTIMEQQK-----S------G---SSSKEIRDALLGLQRKIIDIKQWMQQIEHIPFDIIDVFKLY 146 (843)
Q Consensus 81 ~~~~d~ed~ld~~~~~~~~~~~~-----~------~---~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 146 (843)
+++|++||+++.|.......+.. + - ..+++.+..+..+.+++..+.+..+.++ ....+..
T Consensus 66 ~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~~~~~~----- 139 (889)
T KOG4658|consen 66 DLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLG-SKGVFEV----- 139 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cccceec-----
Confidence 99999999999998866531110 0 0 1156677777888889988888888887 4441111
Q ss_pred hhcccCCccccccccccccccccc-CCCCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCcc-c
Q 003154 147 KAEARKSPAFLCFFKFFKTEASSF-KNRDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNY-V 224 (843)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~ 224 (843)
.+... . +...+.+. ...... ||.+..++++.+.|.+++ ..++||+||||+||||||+.++|+.. +
T Consensus 140 ----~~~~~-----~-~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v 206 (889)
T KOG4658|consen 140 ----VGESL-----D-PREKVETRPIQSESD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEV 206 (889)
T ss_pred ----ccccc-----c-chhhcccCCCCcccc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchh
Confidence 10000 0 11111222 233334 999999999999999887 49999999999999999999999977 9
Q ss_pred cccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHh
Q 003154 225 KHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEI 304 (843)
Q Consensus 225 ~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~ 304 (843)
+.+||.++||+||+.|+..+++++|++.++..... ......++++ ..|.+.|++|||||||||||+..+|+.++.+
T Consensus 207 ~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~~~--~~i~~~L~~krfllvLDDIW~~~dw~~I~~~ 282 (889)
T KOG4658|consen 207 GNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE--WEDKEEDELA--SKLLNLLEGKRFLLVLDDIWEEVDWDKIGVP 282 (889)
T ss_pred cccCceEEEEEEcccccHHhHHHHHHHHhccCCcc--cchhhHHHHH--HHHHHHhccCceEEEEecccccccHHhcCCC
Confidence 99999999999999999999999999999874321 2333446788 9999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEecchhhhhc-------ccc-----------------CCCCcCCcccccccchhhhhcCCchhHHHHH
Q 003154 305 LPDNLNGSRVLTTVSNIEILTS-------FQL-----------------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYH 360 (843)
Q Consensus 305 ~~~~~~gs~iiiTtR~~~v~~~-------~~~-----------------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 360 (843)
+|...+||||++|||++.||.. +++ ......++.+.++|++|+++|+|||||++++
T Consensus 283 ~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~vi 362 (889)
T KOG4658|consen 283 FPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVL 362 (889)
T ss_pred CCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHH
Confidence 9999889999999999999982 222 1112334558999999999999999999999
Q ss_pred hhhhH--------HHHHHhhhcc-----------cccchhhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCC
Q 003154 361 GSLSL--------EENREKILAE-----------PFGDQVLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGF 421 (843)
Q Consensus 361 g~~L~--------~~~~~~~~~~-----------~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~ 421 (843)
|+.|+ +++.+.+.+. +.++|++||++||+++|.||+|||+||+||+|+++.|+.+|+||||
T Consensus 363 G~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGf 442 (889)
T KOG4658|consen 363 GGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGF 442 (889)
T ss_pred HHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccC
Confidence 99999 3333333332 2799999999999999999999999999999999999999999999
Q ss_pred CCCC-----hHHHHHHHHHHHHhcCCeEEEEeCCCCcEeEEEcCcchHHHHHHhhh-----ccccccccccC-C----CC
Q 003154 422 VRDN-----SEATAEEILEELIDRGFIQVKRRKASGTIKTCSFSSLVWPTILAVAC-----TVEFIYAPVMD-P----QG 486 (843)
Q Consensus 422 i~~~-----~~~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mhdlv~~~a~~~~~-----~e~~~~~~~~~-~----~~ 486 (843)
+.+. +++.|+.|+.+|+++||++..+.. ++..+|+|||+||++|.++++ +++.+. ..+ + .+
T Consensus 443 i~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~~~~~~~~~ 518 (889)
T KOG4658|consen 443 IDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV--SDGVGLSEIPQ 518 (889)
T ss_pred cCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE--ECCcCcccccc
Confidence 9873 899999999999999999987754 566899999999999999999 666444 211 0 11
Q ss_pred C-cccceEEEEEeeCCCCCcccccc-ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC-CCCCchhccCCC
Q 003154 487 K-SRKRVRRFCANVNLGELDSFDRL-DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF-LDQYPAGIENLS 563 (843)
Q Consensus 487 ~-~~~~~r~Lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-~~~lp~~i~~L~ 563 (843)
. .+..+||++++ ++......... +++++||.+.++... ...+...+|..++.||||||++|. +.++|.+|++|.
T Consensus 519 ~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 519 VKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred ccchhheeEEEEe-ccchhhccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 1 56789999999 77777677777 889999999998631 144677889999999999999875 679999999999
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCC-cCcccchhhhcccccccccccccccCC--CCCCCCCCcccccccc
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSS-YIDHTADDIWKLNKLRHLNFGLITLPA--HPGKYCSSLENLNFIS 640 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~l~~L~~L~~~~ 640 (843)
|||||+++++.+..+|.++ ++|..|.+||+..+ .+..+|..+..|++||+|.+....... ..+..+.+|++|..+.
T Consensus 596 ~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhcccccCCCccccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 9999999999999999999 99999999999999 566666767779999999965543222 1233555666665555
Q ss_pred ccCCCCCCccccCCCCCCceEeeecC-CcchhhhhhHhhcCCCCCCeEEeecCCC----------------CCCCceEee
Q 003154 641 ALHPRCCTPDILGRLPKLGSLQICGD-LNYYQSLLSKSLHGLSCLESLKLVNESK----------------MPRLSKIVL 703 (843)
Q Consensus 641 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~l~~l~~L~~L~l~~~~~----------------~~~L~~L~l 703 (843)
.......+.+-+..+++|..+...-. ........+.++..+.+|+.|.+..+.. ++++..+.+
T Consensus 675 ~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 675 ITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred eecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 43222211111444444443222211 1122234456667777888888775430 111111111
Q ss_pred ----------ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccc
Q 003154 704 ----------FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLE 773 (843)
Q Consensus 704 ----------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~ 773 (843)
|. .+|++|+.|.+..|...+++++....+..+..+.+..+.+.+.......++|+++..+.+.+.. +.
T Consensus 755 ~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~ 832 (889)
T KOG4658|consen 755 LNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LE 832 (889)
T ss_pred hccccccccchh-hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hh
Confidence 22 3448888888888887777777777777777766665666654344455667777777666543 55
Q ss_pred cccccc----ccccccceEeeecC-CCCCCCCcc
Q 003154 774 EWTMGN----EAMPKLECLVVNPC-AYLKRLPEH 802 (843)
Q Consensus 774 ~l~~~~----~~lp~L~~L~l~~c-~~l~~lp~~ 802 (843)
.|..+. +.+|.+.++.+.+| +.+..+|.+
T Consensus 833 ~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 833 ELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred heehhcCcccccCccccccceeccccceeecCCc
Confidence 554444 56666666666665 555555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4e-59 Score=579.47 Aligned_cols=604 Identities=16% Similarity=0.180 Sum_probs=432.7
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe---CCC-----------
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV---SIL----------- 239 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~----------- 239 (843)
..++|||++.++++..+|..+.+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 45799999999999999987777899999999999999999999999 78899999888742 211
Q ss_pred CC-hHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEe
Q 003154 240 YQ-PDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTV 318 (843)
Q Consensus 240 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTt 318 (843)
++ ...++++++.++....+ .... . . ..+++.+++||+||||||||+.++|+.+.....+.++||+|||||
T Consensus 261 ~~~~~~l~~~~l~~il~~~~---~~~~---~-~--~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD---IKIY---H-L--GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC---cccC---C-H--HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEe
Confidence 11 23456666666654322 1111 1 2 456788999999999999999999999998877888999999999
Q ss_pred cchhhhh-c-----ccc----------------CCCCcCCcccccccchhhhhcCCchhHHHHHhhhhH-------HHHH
Q 003154 319 SNIEILT-S-----FQL----------------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSL-------EENR 369 (843)
Q Consensus 319 R~~~v~~-~-----~~~----------------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~-------~~~~ 369 (843)
|+++++. . |++ ......+.++.+++++|+++|+|+|||++++|+.|+ +.+.
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999986 1 211 122233456888999999999999999999999998 2222
Q ss_pred Hhhh----cccccchhhccCCCch-hhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeE
Q 003154 370 EKIL----AEPFGDQVLTYSKFPL-YFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQ 444 (843)
Q Consensus 370 ~~~~----~~~~~~l~~sy~~L~~-~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~ 444 (843)
+++. .++.++|++||++|++ ..|.||++||+||.+..+ ..+..|.+.+... ++..++.|+++||++
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~ 482 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIH 482 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEE
Confidence 2222 3458899999999987 599999999999998755 3467788776543 344589999999998
Q ss_pred EEEeCCCCcEeEEEcCcchHHHHHHhhhcccccc---ccccCCC--------CCcccceEEEEEeeCCCCCc--cc-ccc
Q 003154 445 VKRRKASGTIKTCSFSSLVWPTILAVACTVEFIY---APVMDPQ--------GKSRKRVRRFCANVNLGELD--SF-DRL 510 (843)
Q Consensus 445 ~~~~~~~~~~~~~~mhdlv~~~a~~~~~~e~~~~---~~~~~~~--------~~~~~~~r~Lsl~~~~~~~~--~~-~~~ 510 (843)
... ..+.|||++|+||+.+++++.... ....+.. +....+++++++. -....+ +. ..+
T Consensus 483 ~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~-~~~~~~~~i~~~aF 554 (1153)
T PLN03210 483 VRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD-IDEIDELHIHENAF 554 (1153)
T ss_pred EcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec-cCccceeeecHHHH
Confidence 743 259999999999999998764110 0000100 1134568888876 322221 11 223
Q ss_pred --ccceeEEEeecCCCCC---CCCcchHHHhccC-CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhh
Q 003154 511 --DSYLHSFLYLSPESDH---LNPRDSMKICKMF-KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLS 584 (843)
Q Consensus 511 --~~~LrsL~~~~~~~~~---~~~~~~~~~~~~~-~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 584 (843)
+++|+.|.+....... ....++.. |..+ +.||.|++.++.+..+|..+ .+.+|+.|+++++.+..+|..+ .
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-H 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc-c
Confidence 7888888886553210 00112222 3333 56999999999999999887 5789999999999999999988 9
Q ss_pred CCccCcEEeCCCC-cCcccchhhhcccccccccccccccCCC---CCCCCCCccccccccccCCCCCCccccCCCCCCce
Q 003154 585 NLLNLYTLDMPSS-YIDHTADDIWKLNKLRHLNFGLITLPAH---PGKYCSSLENLNFISALHPRCCTPDILGRLPKLGS 660 (843)
Q Consensus 585 ~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 660 (843)
.+++|+.|+|++| .+..+|. +..+++|+.|++++|..-.. .+..+++|+.|....+.. ...++..+ ++++|+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-LEILPTGI-NLKSLYR 708 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-cCccCCcC-CCCCCCE
Confidence 9999999999988 6788874 88899999999777543221 122667777777555543 23344423 7889999
Q ss_pred EeeecCCcchhhhhhHhhcCCCCCCeEEeecCC--------CCCCCceEeecc-----------------CCCCCCccEE
Q 003154 661 LQICGDLNYYQSLLSKSLHGLSCLESLKLVNES--------KMPRLSKIVLFE-----------------NQFPPSLTHL 715 (843)
Q Consensus 661 L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l~~-----------------~~lp~~L~~L 715 (843)
|+++++ .....+|. ...+|+.|++.++. .+++|..|.++. ..+|++|+.|
T Consensus 709 L~Lsgc--~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGC--SRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCC--CCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 999874 33333332 23567777777654 234555554421 1123678888
Q ss_pred EEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccc--------------------cc
Q 003154 716 SFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLE--------------------EW 775 (843)
Q Consensus 716 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~--------------------~l 775 (843)
+|++|.....+|..++++++|+.|+|++|..... ++... .+++|+.|++++|..+. .+
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 8888876677788888888888888886643322 22222 46666666666665443 44
Q ss_pred ccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 776 TMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 776 ~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
|..++.+++|+.|++.+|+.++.+|..+..+++|+.+++.+|+
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 5556778999999999999999999989999999999999998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-39 Score=347.61 Aligned_cols=242 Identities=29% Similarity=0.428 Sum_probs=192.0
Q ss_pred chHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCC
Q 003154 180 LDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKL 259 (843)
Q Consensus 180 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 259 (843)
||.++++|.++|....++.++|+|+||||+||||||++++++..++.+|+.++|+.+++..+..+++++|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999767899999999999999999999999777999999999999999999999999999999986321
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhhhc-------c--cc-
Q 003154 260 SEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILTS-------F--QL- 329 (843)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~-------~--~~- 329 (843)
. ....+.++.. ..+++.|+++++||||||||+...|+.+...++....||+||||||+..++.. + ++
T Consensus 81 ~-~~~~~~~~~~--~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 I-SDPKDIEELQ--DQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp S-SCCSSHHHHH--HHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred c-cccccccccc--ccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1345667788 99999999999999999999999999999888887889999999999998871 1 11
Q ss_pred -------------CCC-CcCCcccccccchhhhhcCCchhHHHHHhhhhH--------HHHHHhhh----------cccc
Q 003154 330 -------------ENG-QHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSL--------EENREKIL----------AEPF 377 (843)
Q Consensus 330 -------------~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~--------~~~~~~~~----------~~~~ 377 (843)
... ...++.+.+.+++|+++|+|+|||++++|++|+ .+..+++. ..+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 123466788999999999999999999999996 22222221 1237
Q ss_pred cchhhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCC
Q 003154 378 GDQVLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRD 424 (843)
Q Consensus 378 ~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~ 424 (843)
.++.+||+.||+++|.||+|||+||+++.|+++.|+++|+++|||+.
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 78999999999999999999999999999999999999999999875
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.4e-28 Score=259.65 Aligned_cols=316 Identities=21% Similarity=0.248 Sum_probs=275.4
Q ss_pred ccceEEEEEeeCCCCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCcc
Q 003154 489 RKRVRRFCANVNLGELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLR 566 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr 566 (843)
..+..|||+. ++....+...+ .+.||++.+..+.... ..++..+ -+++.|.+|||+.|.+.+.|..+..-+++-
T Consensus 54 lqkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 54 LQKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN--SGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred Hhhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc--CCCCchh-cccccceeeecchhhhhhcchhhhhhcCcE
Confidence 4577889888 66666566655 8999999998777642 3355554 468999999999999999999999999999
Q ss_pred EEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCC---CCCCCCCccccccccccC
Q 003154 567 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAH---PGKYCSSLENLNFISALH 643 (843)
Q Consensus 567 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~~~~~~ 643 (843)
.|+||+|+|.++|.++|-+|..|-+|||++|.++.+|+.+..|.+|+.|.|++|.+... .+|.+++|+.|...+...
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999988766 667888888888776666
Q ss_pred CCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCC
Q 003154 644 PRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLI 723 (843)
Q Consensus 644 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~ 723 (843)
....+|.++..+.||+.++++. | ....+|..+.++.+|+.|+|++|. ++.|.+..+.. .+|++|++|.|+++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~--N-~Lp~vPecly~l~~LrrLNLS~N~----iteL~~~~~~W-~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSE--N-NLPIVPECLYKLRNLRRLNLSGNK----ITELNMTEGEW-ENLETLNLSRNQLT 281 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccc--c-CCCcchHHHhhhhhhheeccCcCc----eeeeeccHHHH-hhhhhhccccchhc
Confidence 6666777799999999999985 3 455678999999999999999876 88888766677 89999999999985
Q ss_pred CCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccc
Q 003154 724 DDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHL 803 (843)
Q Consensus 724 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l 803 (843)
..|..+..|+.|+.|.+.+|.+.-+.++...+.+.+|+.+...++. ++-+|..+..+++|+.|.++.|. +-.+|.++
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaI 358 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR-LITLPEAI 358 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc-eeechhhh
Confidence 6789999999999999999998888888888889999999999764 88889999999999999999777 56699999
Q ss_pred cCCCCCcEEEecCCCH
Q 003154 804 WCMKNFKKLELWWPQP 819 (843)
Q Consensus 804 ~~l~~L~~L~l~~~~~ 819 (843)
.-++.|+.|++..+|.
T Consensus 359 HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhcCCcceeeccCCcC
Confidence 9999999999999983
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=4.9e-23 Score=256.98 Aligned_cols=271 Identities=24% Similarity=0.270 Sum_probs=138.2
Q ss_pred CCcccEEEcCCCCCC-CCchhccCCCCccEEEccCCCCc-ccchhHhhCCccCcEEeCCCCcCc-ccchhhhcccccccc
Q 003154 539 FKFLRVLDLGSLFLD-QYPAGIENLSRLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPSSYID-HTADDIWKLNKLRHL 615 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L 615 (843)
+++|++|+|++|.+. .+|..++++.+|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 344444444444443 45555666666666666666554 445554 66666666666666543 345666666666666
Q ss_pred cccccccCCCCC---CCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecC
Q 003154 616 NFGLITLPAHPG---KYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 616 ~L~~~~l~~~~~---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 692 (843)
++++|.+.+... ..+++|++|....+. ....++..++++++|+.|++++ |...+.+|..+..+++|++|++++|
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQ--NKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcC--CeeeccCchhHhhccCcCEEECcCC
Confidence 666655544211 145555555533322 2223343466666666666665 4444555566666666666666654
Q ss_pred C----------CCCCCceEeecc-----------CCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCcc
Q 003154 693 S----------KMPRLSKIVLFE-----------NQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKL 751 (843)
Q Consensus 693 ~----------~~~~L~~L~l~~-----------~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 751 (843)
. .+++|+.|.+.. ..+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~- 372 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI- 372 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC-
Confidence 2 344555555522 223 56666666666666666666666666666666666554322
Q ss_pred ccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEec
Q 003154 752 ACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELW 815 (843)
Q Consensus 752 ~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 815 (843)
+.....+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence 1112223334444444333222233333344444444444444333333333333333333333
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=4.8e-23 Score=257.04 Aligned_cols=318 Identities=22% Similarity=0.254 Sum_probs=161.9
Q ss_pred cceEEEEEeeCCCCC-ccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC-CCchhccCCCCccE
Q 003154 490 KRVRRFCANVNLGEL-DSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD-QYPAGIENLSRLRY 567 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~-~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~-~lp~~i~~L~~Lr~ 567 (843)
.+.|+|.+. ++... ..+....++|++|.+.++... ...+..+..+++|++|+|++|.+. .+|..++++++|++
T Consensus 118 ~~L~~L~Ls-~n~l~~~~p~~~l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLS-NNNFTGSIPRGSIPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECc-CCccccccCccccCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 345555555 33322 122212555666666555432 122344566666666666666654 56666666666666
Q ss_pred EEccCCCCc-ccchhHhhCCccCcEEeCCCCcCc-ccchhhhcccccccccccccccCCCCC---CCCCCcccccccccc
Q 003154 568 LKLNIPSLK-SLPSSLLSNLLNLYTLDMPSSYID-HTADDIWKLNKLRHLNFGLITLPAHPG---KYCSSLENLNFISAL 642 (843)
Q Consensus 568 L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~l~~~~~---~~l~~L~~L~~~~~~ 642 (843)
|++++|.+. .+|..+ +++++|++|+|++|.+. .+|..++.+++|++|++++|.+.+... ..+++|++|....+.
T Consensus 193 L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 666666655 345554 66666666666666553 456666666666666666665544211 144444444432221
Q ss_pred CCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC----------CCCCCceEeeccC------
Q 003154 643 HPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES----------KMPRLSKIVLFEN------ 706 (843)
Q Consensus 643 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~~~------ 706 (843)
....++..+.++++|+.|++++ |...+.+|..+..+++|+.|++++|. .+++|+.|.++.+
T Consensus 272 -l~~~~p~~l~~l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 272 -LSGPIPPSIFSLQKLISLDLSD--NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred -eeccCchhHhhccCcCEEECcC--CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 1122333345555555555554 33334444444455555555554432 2334444444221
Q ss_pred -----CC-----------------C------CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCC
Q 003154 707 -----QF-----------------P------PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGF 758 (843)
Q Consensus 707 -----~l-----------------p------~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f 758 (843)
.+ | ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+. .+.....+
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~p~~~~~l 427 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-LPSEFTKL 427 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-CChhHhcC
Confidence 11 0 3444455555544444455555555555555555555432 22233445
Q ss_pred CcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 759 PKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 759 ~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
++|+.|++++|.....++.....+++|+.|++++|.....+|..+ ..++|+.|++++|.
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 566666666555333444444556666666666666555555433 34666667666655
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-21 Score=207.98 Aligned_cols=311 Identities=20% Similarity=0.187 Sum_probs=198.4
Q ss_pred ccceEEEEEeeCCCCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCch-hccCCCCc
Q 003154 489 RKRVRRFCANVNLGELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPA-GIENLSRL 565 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~-~i~~L~~L 565 (843)
..+...+.+. ++....+|... ..++..|.+.++.. ..+....++-++.||+|||+.|.+.++|. ++..-.++
T Consensus 101 l~nLq~v~l~-~N~Lt~IP~f~~~sghl~~L~L~~N~I----~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 101 LPNLQEVNLN-KNELTRIPRFGHESGHLEKLDLRHNLI----SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred CCcceeeeec-cchhhhcccccccccceeEEeeecccc----ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 3456667776 55555555555 67788998888876 34566778889999999999999987774 45566799
Q ss_pred cEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccccCCC---CCCCCCCccccccccc
Q 003154 566 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAH---PGKYCSSLENLNFISA 641 (843)
Q Consensus 566 r~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~~~~ 641 (843)
++|+|++|.|+.+-..-|.+|.+|.+|.|+.|.++.+|.. |.+|++|+.|+|..|.+.-. .+..+.+|+.|..-.+
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 9999999999988877778999999999999999999755 66699999999998887654 3336777777764443
Q ss_pred cCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCC
Q 003154 642 LHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTD 721 (843)
Q Consensus 642 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~ 721 (843)
+ ....-...+..|.+++.|++.. |.....-..++.+++.|+.|+++.|. ++.+++..-++.++|..|+|+.|.
T Consensus 256 ~-I~kL~DG~Fy~l~kme~l~L~~--N~l~~vn~g~lfgLt~L~~L~lS~Na----I~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 256 D-ISKLDDGAFYGLEKMEHLNLET--NRLQAVNEGWLFGLTSLEQLDLSYNA----IQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred C-cccccCcceeeecccceeeccc--chhhhhhcccccccchhhhhccchhh----hheeecchhhhcccceeEeccccc
Confidence 3 1111122366788899999987 65555555677889999999998765 333333111222455555555555
Q ss_pred CCCCCcccccCCCCCcEEEeecccccCC--------------------------ccccCCCCCCcccEEEecCccccccc
Q 003154 722 LIDDPMPTLEKLPYLQVLKLKQNSYSGR--------------------------KLACGSDGFPKLKVLHLKSMIWLEEW 775 (843)
Q Consensus 722 l~~~~~~~l~~l~~L~~L~L~~~~~~~~--------------------------~~~~~~~~f~~L~~L~L~~~~~l~~l 775 (843)
++...+..|..|..|+.|.|+.|.+... .-...+.++++|+.|.|.+++ ++.+
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I 407 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSI 407 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeec
Confidence 5444444444444455555544443321 111122335555555555543 4444
Q ss_pred cc-ccccccccceEeeecCCCCCCCCccccCCCCCcEEE
Q 003154 776 TM-GNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLE 813 (843)
Q Consensus 776 ~~-~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 813 (843)
+. .+..++.||+|++.+|+.-.--|..+.++ +|++|.
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 32 23445555555555555333334444444 455543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=5.2e-22 Score=211.82 Aligned_cols=312 Identities=19% Similarity=0.163 Sum_probs=247.7
Q ss_pred ccceEEEEEeeCCCCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC--CCchhccCCCC
Q 003154 489 RKRVRRFCANVNLGELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD--QYPAGIENLSR 564 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~--~lp~~i~~L~~ 564 (843)
...++.|-+. ......+|+.+ +.+|..|.+..+... ....-++.++.||.+++..|++. -+|..|..|..
T Consensus 31 Mt~~~WLkLn-rt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLN-RTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hhheeEEEec-hhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 4567777777 66666677777 888888888776653 12344678899999999999887 78999999999
Q ss_pred ccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccccCCCCC--CCCCCccccccccc
Q 003154 565 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAHPG--KYCSSLENLNFISA 641 (843)
Q Consensus 565 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~~~--~~l~~L~~L~~~~~ 641 (843)
|..|+||+|++.+.|..+ ..-+++-+|+|++|+|+.+|.. +.+|+-|-.|+|++|++...+. ..+..|++|....+
T Consensus 105 Lt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 999999999999999998 9999999999999999999977 5599999999999999876422 27888999886555
Q ss_pred cCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCC
Q 003154 642 LHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTD 721 (843)
Q Consensus 642 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~ 721 (843)
......+.. +..++.|..|++++. +.....+|.++..+.+|..++++.|+ |..+.-..-.+ ++|+.|+||+|.
T Consensus 184 PL~hfQLrQ-LPsmtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~----Lp~vPecly~l-~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 184 PLNHFQLRQ-LPSMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENN----LPIVPECLYKL-RNLRRLNLSGNK 256 (1255)
T ss_pred hhhHHHHhc-Cccchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccC----CCcchHHHhhh-hhhheeccCcCc
Confidence 434444445 667778888888863 44667788999999999999998654 33333233345 899999999998
Q ss_pred CCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc-cccccccccccccccceEeeecCCCCCCCC
Q 003154 722 LIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI-WLEEWTMGNEAMPKLECLVVNPCAYLKRLP 800 (843)
Q Consensus 722 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~-~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp 800 (843)
++.. --..+...+|+.|+++.|.++. ++.....+++|+.|.+.+++ ..+.+|..+|.+..|+.+...+|. ++-+|
T Consensus 257 iteL-~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVP 332 (1255)
T KOG0444|consen 257 ITEL-NMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVP 332 (1255)
T ss_pred eeee-eccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCc
Confidence 8643 3345677899999999888764 55556678999999998876 345789999999999999998775 88899
Q ss_pred ccccCCCCCcEEEecCCC
Q 003154 801 EHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 801 ~~l~~l~~L~~L~l~~~~ 818 (843)
.++..|+.|+.|.+..+.
T Consensus 333 EglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhhhhhHHHHHhcccccc
Confidence 999999999999998765
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=8.7e-21 Score=201.71 Aligned_cols=296 Identities=20% Similarity=0.233 Sum_probs=229.3
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
++..++|.+.++... .+-..+|.++++|+.++|..|.++.+|...+...||+.|+|.+|.|.++..+-+..++.|+
T Consensus 77 p~~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 788999999988874 3556789999999999999999999998888888999999999999988776668999999
Q ss_pred EEeCCCCcCcccchh-hhcccccccccccccccCCCCCC---CCCCccccccccccCCCCCCccccCCCCCCceEeeecC
Q 003154 591 TLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAHPGK---YCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGD 666 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~~~~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 666 (843)
+|||+.|.|..+|.. +..=.++++|+|++|.++..... .+.+|-+|....+ ......+.++.+|++|+.|++..
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnr- 230 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNR- 230 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccc-
Confidence 999999999999754 55668899999999999876443 5556666653332 23333444588899999999986
Q ss_pred CcchhhhhhHhhcCCCCCCeEEeecCC----------CCCCCceEee-----------ccCCCCCCccEEEEecCCCCCC
Q 003154 667 LNYYQSLLSKSLHGLSCLESLKLVNES----------KMPRLSKIVL-----------FENQFPPSLTHLSFSNTDLIDD 725 (843)
Q Consensus 667 ~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~ 725 (843)
|.....--..+..+++|+.|.+..|+ .+.++++|++ |+-.+ +.|+.|++++|.+...
T Consensus 231 -N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 231 -NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRI 308 (873)
T ss_pred -cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhhee
Confidence 54443334567889999999988765 6788888888 55567 8999999999998777
Q ss_pred CcccccCCCCCcEEEeecccccCCccccCCC------------------------CCCcccEEEecCccccccccc----
Q 003154 726 PMPTLEKLPYLQVLKLKQNSYSGRKLACGSD------------------------GFPKLKVLHLKSMIWLEEWTM---- 777 (843)
Q Consensus 726 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~------------------------~f~~L~~L~L~~~~~l~~l~~---- 777 (843)
.++...-.++|+.|+|++|.+..-. +..+. ++.+|+.|+|+++. + +|..
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-l-s~~IEDaa 385 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-L-SWCIEDAA 385 (873)
T ss_pred ecchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-E-EEEEecch
Confidence 7888888999999999998876422 11122 24455555555543 1 2222
Q ss_pred -ccccccccceEeeecCCCCCCCCc-cccCCCCCcEEEecCCC
Q 003154 778 -GNEAMPKLECLVVNPCAYLKRLPE-HLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 778 -~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 818 (843)
.+..||+|++|.+.+|. ++++|. .+..+++|++|++.+++
T Consensus 386 ~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence 23458999999999887 778875 68889999999999988
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=2.5e-17 Score=206.02 Aligned_cols=269 Identities=20% Similarity=0.161 Sum_probs=158.7
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCC-CcccchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPS-LKSLPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~-i~~lp~~i~~~L~~L 589 (843)
.++||.|.+.++.... ++. .| .+.+|+.|+|.++.+..+|..+..+++|++|+|+++. +..+|. + +.+++|
T Consensus 588 p~~Lr~L~~~~~~l~~----lP~-~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~L 659 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC----MPS-NF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNL 659 (1153)
T ss_pred CcccEEEEecCCCCCC----CCC-cC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcc
Confidence 3456666666554422 111 12 2456666666666666666666666666666666542 444543 3 566666
Q ss_pred cEEeCCCC-cCcccchhhhcccccccccccccccCCCCCC---CCCCccccccccccCCC-------------------C
Q 003154 590 YTLDMPSS-YIDHTADDIWKLNKLRHLNFGLITLPAHPGK---YCSSLENLNFISALHPR-------------------C 646 (843)
Q Consensus 590 ~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~---~l~~L~~L~~~~~~~~~-------------------~ 646 (843)
++|+|++| .+..+|..++++++|++|++++|..-. .+| .+++|+.|....+.... .
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 66666666 556666666666666666655432111 111 33444444332221100 0
Q ss_pred CCcccc------------------------------CCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCC
Q 003154 647 CTPDIL------------------------------GRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMP 696 (843)
Q Consensus 647 ~~~~~l------------------------------~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 696 (843)
.++..+ ...++|+.|++++ +.....+|.+++++++|+.|+++ .|.
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~--n~~l~~lP~si~~L~~L~~L~Ls---~C~ 813 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD--IPSLVELPSSIQNLHKLEHLEIE---NCI 813 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCC--CCCccccChhhhCCCCCCEEECC---CCC
Confidence 111100 0112444555544 33344466666677777777776 344
Q ss_pred CCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccc
Q 003154 697 RLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWT 776 (843)
Q Consensus 697 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~ 776 (843)
+|+.+.-.. .+ ++|+.|++++|......|.. .++|+.|+|++|.+.. ++.....+++|+.|++++|+++..++
T Consensus 814 ~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 814 NLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CcCeeCCCC-Cc-cccCEEECCCCCcccccccc---ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccC
Confidence 555544222 35 78888888887644443332 4678888888877753 45556779999999999999999999
Q ss_pred cccccccccceEeeecCCCCCCCC
Q 003154 777 MGNEAMPKLECLVVNPCAYLKRLP 800 (843)
Q Consensus 777 ~~~~~lp~L~~L~l~~c~~l~~lp 800 (843)
.....+++|+.|.+++|+.+..++
T Consensus 887 ~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccccccCCCeeecCCCccccccc
Confidence 888999999999999999887543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=2.2e-20 Score=190.58 Aligned_cols=88 Identities=24% Similarity=0.228 Sum_probs=59.0
Q ss_pred ccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc----------------------cccccccc-cccccc
Q 003154 728 PTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI----------------------WLEEWTMG-NEAMPK 784 (843)
Q Consensus 728 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~----------------------~l~~l~~~-~~~lp~ 784 (843)
..+..+++|..|+|++|-+.. ++...+.+..|+.|+++.+. .+.+++.+ ..+|.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 334556666666666443322 22233344456666655432 23344333 678999
Q ss_pred cceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 785 LECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 785 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
|.+|++.+|. +..+|..++++++|++|+++|+|
T Consensus 507 L~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 507 LTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 9999999887 67799999999999999999999
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=3.7e-18 Score=191.52 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=67.1
Q ss_pred cceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcE
Q 003154 512 SYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYT 591 (843)
Q Consensus 512 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 591 (843)
-+|.+|.+.++.... .+..+..+..|+.|+++.|.+.++|.+++++.+|+||+|.+|.+..+|.++ ..+++|+.
T Consensus 45 v~L~~l~lsnn~~~~-----fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~~ 118 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISS-----FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQY 118 (1081)
T ss_pred eeeEEeecccccccc-----CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhcccc
Confidence 346667666666532 123344556677777777777777777777777777777777777777776 77777777
Q ss_pred EeCCCCcCcccchhhhccccccccccccc
Q 003154 592 LDMPSSYIDHTADDIWKLNKLRHLNFGLI 620 (843)
Q Consensus 592 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 620 (843)
||+++|.+...|.-+..++.+..+..++|
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 77777777666665555544444444433
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=7.4e-19 Score=179.60 Aligned_cols=263 Identities=23% Similarity=0.235 Sum_probs=198.6
Q ss_pred eeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEe
Q 003154 514 LHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLD 593 (843)
Q Consensus 514 LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~ 593 (843)
+..+.+.++... ....-+.++..|.||++.++.+.++|.+|+.+..++.|+.++|++..+|+.+ +.+.+|..|+
T Consensus 47 l~~lils~N~l~-----~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLE-----VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchh-----hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhh
Confidence 344455444432 2234467778888888888888888888888888888888888888888888 8888888888
Q ss_pred CCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhh
Q 003154 594 MPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSL 673 (843)
Q Consensus 594 L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 673 (843)
.+++.+.++|++++.+..|..|+.++|++.. .++.++++.+|..|.+.+ +... +
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s-----------------------lp~~~~~~~~l~~l~~~~--n~l~-~ 174 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISS-----------------------LPEDMVNLSKLSKLDLEG--NKLK-A 174 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhcccccccc-----------------------CchHHHHHHHHHHhhccc--cchh-h
Confidence 8888888888888888888888877776643 233467777777777775 4333 3
Q ss_pred hhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCcccc
Q 003154 674 LSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLAC 753 (843)
Q Consensus 674 l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 753 (843)
+|+....++.|++|+...|. |+.+.-.++.+ .+|..|++..|++.. .|.|+.+..|++|+++.|.+.. ....
T Consensus 175 l~~~~i~m~~L~~ld~~~N~----L~tlP~~lg~l-~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~-lpae 246 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNL----LETLPPELGGL-ESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEM-LPAE 246 (565)
T ss_pred CCHHHHHHHHHHhcccchhh----hhcCChhhcch-hhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHh-hHHH
Confidence 44444458888888876543 45554455666 788888888888742 4488999999999999776653 2223
Q ss_pred CCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCCH
Q 003154 754 GSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQP 819 (843)
Q Consensus 754 ~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 819 (843)
....+++|..|++.+++ ++++|.+..-+.+|++|++++|. +.++|..++++ .|+.|.+.|+|-
T Consensus 247 ~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred Hhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 34468999999999976 89999999899999999999887 67899999999 899999999994
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=180.06 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=59.8
Q ss_pred eEEEEEeeCCCCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEE
Q 003154 492 VRRFCANVNLGELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLK 569 (843)
Q Consensus 492 ~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~ 569 (843)
..+|.+. ++.....+..+ .++|+.|.+..+... ..+....++++|++|.|.+|.+..+|.++..+++|.||+
T Consensus 47 L~~l~ls-nn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLS-NNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeecc-ccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 4555555 55555455555 777887777766653 233566778888888888888888888888888888888
Q ss_pred ccCCCCcccchhH
Q 003154 570 LNIPSLKSLPSSL 582 (843)
Q Consensus 570 L~~~~i~~lp~~i 582 (843)
+++|.+...|.-+
T Consensus 121 lS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVI 133 (1081)
T ss_pred cchhccCCCchhH
Confidence 8887777666644
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=4.8e-14 Score=164.10 Aligned_cols=258 Identities=18% Similarity=0.089 Sum_probs=145.9
Q ss_pred EEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCC
Q 003154 495 FCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPS 574 (843)
Q Consensus 495 Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~ 574 (843)
|.+. +.....+|..+.++++.|.+.++.... ++ ...++|++|+|++|.++.+|.. ..+|+.|++++|.
T Consensus 206 LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt~----LP----~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 206 LNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS----LP----ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEcC-CCCCCcCCcchhcCCCEEEccCCcCCC----CC----CCCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4444 334444555555678888877766532 21 2357889999999888888753 3578888998888
Q ss_pred CcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCC
Q 003154 575 LKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGR 654 (843)
Q Consensus 575 i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 654 (843)
+..+|.. ..+|+.|++++|.+..+|.. +++|+.|++++|.+.... +...+|+.|....+. ...++. +
T Consensus 274 L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp-~lp~~L~~L~Ls~N~--L~~LP~-l-- 340 (788)
T PRK15387 274 LTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQ--LTSLPT-L-- 340 (788)
T ss_pred hhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECCCCccccCC-CCcccccccccccCc--cccccc-c--
Confidence 8888763 35677888999888888763 467888898888776521 122344444422221 111221 1
Q ss_pred CCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCC
Q 003154 655 LPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLP 734 (843)
Q Consensus 655 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~ 734 (843)
..+|+.|++++ |... .+|.. ..+|+.|++++|. |..+ ..+|++|+.|++++|.+.. .|.. .+
T Consensus 341 p~~Lq~LdLS~--N~Ls-~LP~l---p~~L~~L~Ls~N~----L~~L----P~l~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 341 PSGLQELSVSD--NQLA-SLPTL---PSELYKLWAYNNR----LTSL----PALPSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred ccccceEecCC--CccC-CCCCC---Ccccceehhhccc----cccC----cccccccceEEecCCcccC-CCCc---cc
Confidence 12566666664 3322 23321 2345555555432 2211 1122566666666666543 2221 24
Q ss_pred CCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCc
Q 003154 735 YLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPE 801 (843)
Q Consensus 735 ~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~ 801 (843)
+|+.|++++|.+.. ++. .+.+|+.|++++|. ++.+|..++.+++|+.|++++|+.-...|.
T Consensus 403 ~L~~LdLS~N~Lss--IP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 403 ELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCEEEccCCcCCC--CCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 56666666665543 111 13456666666654 556666666666666666666665444333
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1e-13 Score=162.49 Aligned_cols=223 Identities=21% Similarity=0.267 Sum_probs=130.2
Q ss_pred cccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLI 620 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 620 (843)
.|+.|+|++|.+..+|..+. .+|++|++++|.++.+|..+ . .+|+.|+|++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 45555555555555555443 35555555555555555543 2 345555555555555555443 34555555544
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCce
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSK 700 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 700 (843)
.+.. ++..+. ++|+.|++++ |... .+|..+. ++|+.|++++|. |..
T Consensus 273 ~L~~-----------------------LP~~l~--~sL~~L~Ls~--N~Lt-~LP~~lp--~sL~~L~Ls~N~----Lt~ 318 (754)
T PRK15370 273 KISC-----------------------LPENLP--EELRYLSVYD--NSIR-TLPAHLP--SGITHLNVQSNS----LTA 318 (754)
T ss_pred ccCc-----------------------cccccC--CCCcEEECCC--Cccc-cCcccch--hhHHHHHhcCCc----ccc
Confidence 4432 222122 3677777775 4322 2333221 356777776543 332
Q ss_pred EeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccc
Q 003154 701 IVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNE 780 (843)
Q Consensus 701 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~ 780 (843)
+. ..+|++|+.|.+++|.+++ +|..+ .++|+.|+|++|.+.. ++.. -.++|++|++++|. +..+|...
T Consensus 319 LP---~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~-Lt~LP~~l- 386 (754)
T PRK15370 319 LP---ETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPET--LPPTITTLDVSRNA-LTNLPENL- 386 (754)
T ss_pred CC---ccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChh--hcCCcCEEECCCCc-CCCCCHhH-
Confidence 21 1233788888888888764 44444 3688899998887753 2221 13688999998875 66666543
Q ss_pred cccccceEeeecCCCCCCCCcccc----CCCCCcEEEecCCC
Q 003154 781 AMPKLECLVVNPCAYLKRLPEHLW----CMKNFKKLELWWPQ 818 (843)
Q Consensus 781 ~lp~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~~~ 818 (843)
.++|+.|++++|. +..+|..+. .++++..|++.++|
T Consensus 387 -~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 -PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2468888888876 556766443 34778888888888
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.2e-13 Score=159.70 Aligned_cols=245 Identities=20% Similarity=0.223 Sum_probs=143.2
Q ss_pred eEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEcc
Q 003154 492 VRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLN 571 (843)
Q Consensus 492 ~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~ 571 (843)
...+.+. +.....+|..+.++++.|.+.++... .++...+ ++|++|++++|.+..+|..+. .+|+.|+|+
T Consensus 180 ~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~Lt----sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLK-ILGLTTIPACIPEQITTLILDNNELK----SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeC-CCCcCcCCcccccCCcEEEecCCCCC----cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3455565 44444455555677888888877653 2333333 478899999988888887664 478899999
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccc
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDI 651 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~ 651 (843)
+|.+..+|..+ . .+|++|++++|.+..+|..+. ++|++|++++|.+........++|+.|....+. . ..++..
T Consensus 250 ~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~-L-t~LP~~ 322 (754)
T PRK15370 250 INRITELPERL-P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS-L-TALPET 322 (754)
T ss_pred CCccCcCChhH-h--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCc-c-ccCCcc
Confidence 99888888876 3 578899999888888887664 578888888887764211122345555433321 1 112221
Q ss_pred cCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCccccc
Q 003154 652 LGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLE 731 (843)
Q Consensus 652 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~ 731 (843)
+ .++|+.|++.+ |... .+|..+. ++|+.|++++|. +..+. ..+|++|+.|+|++|.++. +|+.+.
T Consensus 323 l--~~sL~~L~Ls~--N~Lt-~LP~~l~--~sL~~L~Ls~N~----L~~LP---~~lp~~L~~LdLs~N~Lt~-LP~~l~ 387 (754)
T PRK15370 323 L--PPGLKTLEAGE--NALT-SLPASLP--PELQVLDVSKNQ----ITVLP---ETLPPTITTLDVSRNALTN-LPENLP 387 (754)
T ss_pred c--cccceeccccC--Cccc-cCChhhc--CcccEEECCCCC----CCcCC---hhhcCCcCEEECCCCcCCC-CCHhHH
Confidence 1 24566666665 3222 2444332 466666666543 22221 1223566777777766542 333332
Q ss_pred CCCCCcEEEeecccccCC--ccccCCCCCCcccEEEecCcc
Q 003154 732 KLPYLQVLKLKQNSYSGR--KLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 732 ~l~~L~~L~L~~~~~~~~--~~~~~~~~f~~L~~L~L~~~~ 770 (843)
++|+.|++++|.+... .++.....+|++..|.+.+|+
T Consensus 388 --~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 --AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2566666666665431 111122334666666666655
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=2.4e-12 Score=150.08 Aligned_cols=236 Identities=18% Similarity=0.057 Sum_probs=160.3
Q ss_pred ccceEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEE
Q 003154 489 RKRVRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYL 568 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L 568 (843)
+..++.|.+. ++....++. ..++|++|.+.++.... ++ ...++|+.|+|++|.+..+|... ..|+.|
T Consensus 221 ~~~L~~L~L~-~N~Lt~LP~-lp~~Lk~LdLs~N~Lts----LP----~lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L 287 (788)
T PRK15387 221 PAHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLTS----LP----VLPPGLLELSIFSNPLTHLPALP---SGLCKL 287 (788)
T ss_pred hcCCCEEEcc-CCcCCCCCC-CCCCCcEEEecCCccCc----cc----CcccccceeeccCCchhhhhhch---hhcCEE
Confidence 3457788887 555553432 36889999998876532 22 12468889999999888777533 468889
Q ss_pred EccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCC-CCCCccccccccccCCCCC
Q 003154 569 KLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGK-YCSSLENLNFISALHPRCC 647 (843)
Q Consensus 569 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~-~l~~L~~L~~~~~~~~~~~ 647 (843)
++++|.++.+|.. +++|+.|++++|.+..+|... .+|+.|++++|.+.. +| ...+|+.|....+. ...
T Consensus 288 ~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~--LP~lp~~Lq~LdLS~N~--Ls~ 356 (788)
T PRK15387 288 WIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTS--LPTLPSGLQELSVSDNQ--LAS 356 (788)
T ss_pred ECcCCcccccccc----ccccceeECCCCccccCCCCc---ccccccccccCcccc--ccccccccceEecCCCc--cCC
Confidence 9999999988863 467899999999888887633 357778888887764 33 23467777754432 112
Q ss_pred CccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCc
Q 003154 648 TPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPM 727 (843)
Q Consensus 648 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~ 727 (843)
++. + ..+|+.|++++ |... .+|.. ..+|+.|+++.|. +..+. ..|++|+.|++++|.+.. +|
T Consensus 357 LP~-l--p~~L~~L~Ls~--N~L~-~LP~l---~~~L~~LdLs~N~----Lt~LP----~l~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 357 LPT-L--PSELYKLWAYN--NRLT-SLPAL---PSGLKELIVSGNR----LTSLP----VLPSELKELMVSGNRLTS-LP 418 (788)
T ss_pred CCC-C--Ccccceehhhc--cccc-cCccc---ccccceEEecCCc----ccCCC----CcccCCCEEEccCCcCCC-CC
Confidence 333 1 24677787775 4333 34533 3578999998654 33221 223789999999999864 44
Q ss_pred ccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccc
Q 003154 728 PTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIW 771 (843)
Q Consensus 728 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~ 771 (843)
.. ..+|+.|++++|.+.. ++.....+++|+.|+|++|+.
T Consensus 419 ~l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cc---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCC
Confidence 32 3578899999888873 455566789999999999873
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=1e-13 Score=150.51 Aligned_cols=263 Identities=20% Similarity=0.160 Sum_probs=159.6
Q ss_pred hHHHhccCCcccEEEcCCCCCC-----CCchhccCCCCccEEEccCCCCcc-------cchhHhhCCccCcEEeCCCCcC
Q 003154 532 SMKICKMFKFLRVLDLGSLFLD-----QYPAGIENLSRLRYLKLNIPSLKS-------LPSSLLSNLLNLYTLDMPSSYI 599 (843)
Q Consensus 532 ~~~~~~~~~~LrvL~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~l 599 (843)
....|..+..|++|+++++.+. .++..+...+.|++|+++++.+.. ++..+ .++++|+.|++++|.+
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCC
Confidence 3466777788999999998874 456667778889999998877663 22333 7788999999999877
Q ss_pred c-ccchhhhcccc---cccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCC-CCCceEeeecCCcchh---
Q 003154 600 D-HTADDIWKLNK---LRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRL-PKLGSLQICGDLNYYQ--- 671 (843)
Q Consensus 600 ~-~lp~~i~~L~~---L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~--- 671 (843)
. ..+..+..+.+ |++|++++|.+..... ..+...+..+ ++|+.|++.+ +...
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~--n~l~~~~ 153 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGR--NRLEGAS 153 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCC--CcCCchH
Confidence 5 34555666655 8899877766543100 0111224555 7788888876 3222
Q ss_pred -hhhhHhhcCCCCCCeEEeecCCCCC--CCceEeeccCCCCCCccEEEEecCCCCCCC----cccccCCCCCcEEEeecc
Q 003154 672 -SLLSKSLHGLSCLESLKLVNESKMP--RLSKIVLFENQFPPSLTHLSFSNTDLIDDP----MPTLEKLPYLQVLKLKQN 744 (843)
Q Consensus 672 -~~l~~~l~~l~~L~~L~l~~~~~~~--~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~ 744 (843)
..++..+..+++|+.|+++++. .. .+..+.-....+ ++|+.|++++|.+.+.. ...+..+++|++|++++|
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 2344556666778888877543 10 000110011233 57788888877765332 234556778888888877
Q ss_pred cccCCccccCCC----CCCcccEEEecCccccc-----ccccccccccccceEeeecCCCCCC----CCccccCC-CCCc
Q 003154 745 SYSGRKLACGSD----GFPKLKVLHLKSMIWLE-----EWTMGNEAMPKLECLVVNPCAYLKR----LPEHLWCM-KNFK 810 (843)
Q Consensus 745 ~~~~~~~~~~~~----~f~~L~~L~L~~~~~l~-----~l~~~~~~lp~L~~L~l~~c~~l~~----lp~~l~~l-~~L~ 810 (843)
.+.+..+..... ..++|++|++++|. ++ .+......+++|+.|++++|..-.. +...+... +.|+
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 766422211111 24678888888775 32 2222334557788888887775432 33333444 5777
Q ss_pred EEEecCCC
Q 003154 811 KLELWWPQ 818 (843)
Q Consensus 811 ~L~l~~~~ 818 (843)
+|++.++|
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 77777665
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=3.3e-14 Score=129.48 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=93.8
Q ss_pred cCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccc
Q 003154 538 MFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNF 617 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 617 (843)
.+.+.+.|.|++|.+..+|+.|..|.+|+.|++++|+|+++|.++ +.+++|+.|+++-|.+..+|.+++.++.|+.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 455667777777777777777777777777777777777777777 7777777777777777777777777777777777
Q ss_pred cccccCCCCCC-CCCCccccccccccC-CCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecC
Q 003154 618 GLITLPAHPGK-YCSSLENLNFISALH-PRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 618 ~~~~l~~~~~~-~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 692 (843)
..|++....+| ++-.+++|..+..+. .-..++..++++++|+.|.+.. | ..-.+|..++.+..|+.|.+.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd--n-dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD--N-DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc--C-chhhCcHHHHHHHHHHHHhcccc
Confidence 77776655444 222233332222211 1112222266666666666654 2 22334555555555555555543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.9e-13 Score=140.42 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=104.7
Q ss_pred CccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC-CchhccCCCCccEEEccC-CCCcccchh
Q 003154 504 LDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ-YPAGIENLSRLRYLKLNI-PSLKSLPSS 581 (843)
Q Consensus 504 ~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~-lp~~i~~L~~Lr~L~L~~-~~i~~lp~~ 581 (843)
.++|..+.+....+.+..+.. ..+++..|+.++.||.|||+.|.|.. -|+.|..|..|-.|-+-+ |+|+.+|..
T Consensus 59 ~eVP~~LP~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 59 TEVPANLPPETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred ccCcccCCCcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 446766777788888888777 46889999999999999999999984 488899999888877766 999999999
Q ss_pred HhhCCccCcEEeCCCCcCcccc-hhhhcccccccccccccccCCC---CCCCCCCccccc
Q 003154 582 LLSNLLNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLITLPAH---PGKYCSSLENLN 637 (843)
Q Consensus 582 i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~l~~~---~~~~l~~L~~L~ 637 (843)
.|++|..|+.|.+.-|.+..++ ..+..|++|..|.+..|.+... .+..+.+++++.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 9999999999999999998885 5589999999999776655432 222445555554
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-11 Score=146.88 Aligned_cols=147 Identities=24% Similarity=0.224 Sum_probs=107.6
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC--CCCCchh-ccCCCCccEEEccCC-CCcccchhHhhCC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF--LDQYPAG-IENLSRLRYLKLNIP-SLKSLPSSLLSNL 586 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~--~~~lp~~-i~~L~~Lr~L~L~~~-~i~~lp~~i~~~L 586 (843)
...+|...+.++..... .--..++.|++|-+.++. +..++.. |..+++||+|+|++| .+.++|.+| ++|
T Consensus 522 ~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GEL 594 (889)
T ss_pred hhheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhh
Confidence 66778888777665321 112344579999999986 5566544 678999999999975 577999999 999
Q ss_pred ccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCC---CCCCcccccccccc--CCCCCCccccCCCCCCceE
Q 003154 587 LNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGK---YCSSLENLNFISAL--HPRCCTPDILGRLPKLGSL 661 (843)
Q Consensus 587 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~---~l~~L~~L~~~~~~--~~~~~~~~~l~~l~~L~~L 661 (843)
-+|++|+++++.+..+|.++.+|.+|.+|++..+.--.+... .+++|++|...... .....+.+ +.++.+|+.+
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhh
Confidence 999999999999999999999999999999776543222211 58888888766553 22233344 6666777766
Q ss_pred eeec
Q 003154 662 QICG 665 (843)
Q Consensus 662 ~l~~ 665 (843)
.+..
T Consensus 674 s~~~ 677 (889)
T KOG4658|consen 674 SITI 677 (889)
T ss_pred eeec
Confidence 6653
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-13 Score=125.15 Aligned_cols=159 Identities=25% Similarity=0.364 Sum_probs=121.4
Q ss_pred hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccc
Q 003154 558 GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLN 637 (843)
Q Consensus 558 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~ 637 (843)
.+.++.+...|-||+|+++.+|+.| ..|.+|+.|++.+|.++++|..|+.|++|++|+++.|++..
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~------------- 93 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI------------- 93 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-------------
Confidence 4557788899999999999999999 99999999999999999999999999999999988777643
Q ss_pred cccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEE
Q 003154 638 FISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSF 717 (843)
Q Consensus 638 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L 717 (843)
++.+++.++.|+.|++.. .|.....+|..+..+..|+.|+++.|+ .+.+.-.++.+ ++|+.|.+
T Consensus 94 ----------lprgfgs~p~levldlty-nnl~e~~lpgnff~m~tlralyl~dnd----fe~lp~dvg~l-t~lqil~l 157 (264)
T KOG0617|consen 94 ----------LPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDND----FEILPPDVGKL-TNLQILSL 157 (264)
T ss_pred ----------CccccCCCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcCCC----cccCChhhhhh-cceeEEee
Confidence 234477777777777765 123344566666667777777777665 33333345566 77777777
Q ss_pred ecCCCCCCCcccccCCCCCcEEEeeccccc
Q 003154 718 SNTDLIDDPMPTLEKLPYLQVLKLKQNSYS 747 (843)
Q Consensus 718 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 747 (843)
..|.+. ..|..++.+..|+.|.+.+|.+.
T Consensus 158 rdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 158 RDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 777653 45677788888888888877664
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=1.7e-12 Score=141.00 Aligned_cols=262 Identities=20% Similarity=0.113 Sum_probs=149.7
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC-------CchhccCCCCccEEEccCCCCcccchhHh
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ-------YPAGIENLSRLRYLKLNIPSLKSLPSSLL 583 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~-------lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~ 583 (843)
..+++.|.+.++.............+...+.|+.|+++++.+.. ++..+.++++|++|++++|.+.......+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 45567777766654210011234456667778888888876552 23456677888888888887763333222
Q ss_pred hCCcc---CcEEeCCCCcCcc-----cchhhhcc-cccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCC
Q 003154 584 SNLLN---LYTLDMPSSYIDH-----TADDIWKL-NKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGR 654 (843)
Q Consensus 584 ~~L~~---L~~L~L~~~~l~~-----lp~~i~~L-~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 654 (843)
..+.+ |++|++++|.+.. ++..+..+ ++|+.|++++|.+.... + ..+...+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~------~------------~~~~~~~~~ 163 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS------C------------EALAKALRA 163 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH------H------------HHHHHHHHh
Confidence 55555 8888888887652 23445566 78888887776665310 0 001122555
Q ss_pred CCCCceEeeecCCcchh----hhhhHhhcCCCCCCeEEeecCC-CCCCCceEeeccCCCCCCccEEEEecCCCCCCCccc
Q 003154 655 LPKLGSLQICGDLNYYQ----SLLSKSLHGLSCLESLKLVNES-KMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPT 729 (843)
Q Consensus 655 l~~L~~L~l~~~~~~~~----~~l~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~ 729 (843)
+++|+.|++.+ +... ..++..+..+++|++|+++++. .......+.-.+..+ ++|+.|++++|.+.+..+..
T Consensus 164 ~~~L~~L~l~~--n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 164 NRDLKELNLAN--NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred CCCcCEEECcC--CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHH
Confidence 56677777765 3222 2334445556677777777543 000111111123345 77888888888765422222
Q ss_pred cc-----CCCCCcEEEeecccccCCc---cccCCCCCCcccEEEecCccccccc-----ccccccc-cccceEeeecCC
Q 003154 730 LE-----KLPYLQVLKLKQNSYSGRK---LACGSDGFPKLKVLHLKSMIWLEEW-----TMGNEAM-PKLECLVVNPCA 794 (843)
Q Consensus 730 l~-----~l~~L~~L~L~~~~~~~~~---~~~~~~~f~~L~~L~L~~~~~l~~l-----~~~~~~l-p~L~~L~l~~c~ 794 (843)
+. ..+.|+.|++++|.+.... +......+++|++|++++|. +... ......+ +.|+.|++.+++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 22 2478888888888775322 12223446788888888876 3322 2223344 678888887765
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.11 E-value=1.2e-08 Score=114.16 Aligned_cols=288 Identities=15% Similarity=0.079 Sum_probs=162.1
Q ss_pred CCCceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHH
Q 003154 173 RDNDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 250 (843)
.+..++||++++++|...+... +.....+.|+|.+|+|||++++.++++.......-..+++.+....+...++.+|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4567999999999999998553 23345678999999999999999998532222123456666666667889999999
Q ss_pred HHhCCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCch------hhHHHHHhcCCCCCCcE--EEEEecc
Q 003154 251 KFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTND------VWEFIQEILPDNLNGSR--VLTTVSN 320 (843)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~------~~~~l~~~~~~~~~gs~--iiiTtR~ 320 (843)
.++..... + ....+.+++. ..+.+.++ ++..+||||+++... .+..+...... ..+++ ||.++..
T Consensus 108 ~~l~~~~~-~-~~~~~~~~~~--~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~ 182 (394)
T PRK00411 108 RQLFGHPP-P-SSGLSFDELF--DKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSD 182 (394)
T ss_pred HHhcCCCC-C-CCCCCHHHHH--HHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECC
Confidence 99976221 1 1223455666 77777775 456899999997632 33344333222 22444 5666655
Q ss_pred hhhhh-------c--------ccc-------------CCCCcCCccc-ccccchhhhhc----CCchhHHHHHhhhhH--
Q 003154 321 IEILT-------S--------FQL-------------ENGQHIRLDL-VPAGGPLRVTY----EGWPFLILYHGSLSL-- 365 (843)
Q Consensus 321 ~~v~~-------~--------~~~-------------~~~~~~~~~~-~~~~~~i~~~c----~GlPLai~~~g~~L~-- 365 (843)
..+.. + +.| ......+..+ .+..+.|++++ |..+.|+.++-.+..
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 43322 0 122 0000000011 12223344433 557777776644332
Q ss_pred ----------HHHHHhhhcccccchhhccCCCchhhhhHHhhhcc-CCC-CCccChhhHHHH--HHH--cCCCCCChHHH
Q 003154 366 ----------EENREKILAEPFGDQVLTYSKFPLYFKLCGLYLSV-FPL-HSEISARQLYQL--WIA--EGFVRDNSEAT 429 (843)
Q Consensus 366 ----------~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~-fp~-~~~i~~~~Li~~--wia--eg~i~~~~~~~ 429 (843)
+.+......-......-.+..||.+.|..+..++- ... ...+...++... .++ .|.- +.....
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~-~~~~~~ 341 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE-PRTHTR 341 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-cCcHHH
Confidence 01110000001334455688999987766555442 221 134555555532 222 2321 113455
Q ss_pred HHHHHHHHHhcCCeEEEEe--CCCCcEeEEEcCcchHHH
Q 003154 430 AEEILEELIDRGFIQVKRR--KASGTIKTCSFSSLVWPT 466 (843)
Q Consensus 430 ~~~~~~~L~~rsll~~~~~--~~~~~~~~~~mhdlv~~~ 466 (843)
...|++.|.+.++|..... +..|+.+.++.+.---++
T Consensus 342 ~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~ 380 (394)
T PRK00411 342 FYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDV 380 (394)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHH
Confidence 6779999999999987643 335666667665433333
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.7e-10 Score=119.20 Aligned_cols=237 Identities=21% Similarity=0.156 Sum_probs=156.4
Q ss_pred CchhccCCCCccEEEccCCCCcccch--hHhhCCccCcEEeCCCCcCc---ccchhhhcccccccccccccccCCCCCCC
Q 003154 555 YPAGIENLSRLRYLKLNIPSLKSLPS--SLLSNLLNLYTLDMPSSYID---HTADDIWKLNKLRHLNFGLITLPAHPGKY 629 (843)
Q Consensus 555 lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~~~l~~~~~~~ 629 (843)
+-..=.++..||...|.++.+...+. .. ..|++++.|||++|-+. .+-.-+..|++|+.|+++.|.+...
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~---- 187 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF---- 187 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC----
Confidence 33344577888888888888776663 44 78999999999998543 3344567899999999888887531
Q ss_pred CCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCC
Q 003154 630 CSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFP 709 (843)
Q Consensus 630 l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp 709 (843)
. .... -..+++|+.|.++.|.- ....+-..+..+++|+.|.+..|. .+-.-.....-+
T Consensus 188 ----------~----~s~~---~~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~---~~~~~~~~~~i~- 245 (505)
T KOG3207|consen 188 ----------I----SSNT---TLLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANE---IILIKATSTKIL- 245 (505)
T ss_pred ----------c----cccc---hhhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhccc---ccceecchhhhh-
Confidence 0 0000 12566788888887432 244555566678899999988763 111000011223
Q ss_pred CCccEEEEecCCCCC-CCcccccCCCCCcEEEeecccccCCccccC-----CCCCCcccEEEecCccccccccc--cccc
Q 003154 710 PSLTHLSFSNTDLID-DPMPTLEKLPYLQVLKLKQNSYSGRKLACG-----SDGFPKLKVLHLKSMIWLEEWTM--GNEA 781 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~f~~L~~L~L~~~~~l~~l~~--~~~~ 781 (843)
..|+.|+|++|++.. ......+.+|.|..|+++.+.+.....+.. ...||+|++|.+..|+ +.+|+. ....
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRT 324 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhc
Confidence 789999999997654 234678899999999999888776544433 4569999999999987 555643 3456
Q ss_pred ccccceEeeecCCCCCCC----CccccCCCCCcEEEecCCCH
Q 003154 782 MPKLECLVVNPCAYLKRL----PEHLWCMKNFKKLELWWPQP 819 (843)
Q Consensus 782 lp~L~~L~l~~c~~l~~l----p~~l~~l~~L~~L~l~~~~~ 819 (843)
+++|+.|.+..++.-+.- -..+..++.|..|+=.+|.+
T Consensus 325 l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISP 366 (505)
T ss_pred cchhhhhhcccccccccccceeEEeeeehhhhhhhcccccCh
Confidence 888999988877643311 11344555555555444443
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.92 E-value=1.8e-07 Score=103.48 Aligned_cols=270 Identities=17% Similarity=0.147 Sum_probs=147.3
Q ss_pred CCceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccC------CeeEEEEeCCCCChHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF------DCKAWVPVSILYQPDSL 245 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~ 245 (843)
+..++||++++++|..+|... +.....+.|+|++|+|||++++.+++. ..... -..+|+.+....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 357999999999999998752 233567899999999999999999984 22211 13567777777778889
Q ss_pred HHHHHHHhCC-CCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCch-----hhHHHHHhc-CCCC--CCcEE
Q 003154 246 LDNIIKFLMP-SSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTND-----VWEFIQEIL-PDNL--NGSRV 314 (843)
Q Consensus 246 ~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-----~~~~l~~~~-~~~~--~gs~i 314 (843)
+..|++++.. ....+ ....+.++.. ..+.+.+. +++++||||+++... ....+.... .... ..-.+
T Consensus 92 ~~~i~~~l~~~~~~~~-~~~~~~~~~~--~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 92 LVELANQLRGSGEEVP-TTGLSTSEVF--RRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHhhcCCCCC-CCCCCHHHHH--HHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 9999999942 11111 1122344555 56666663 568899999997651 122332221 1111 22344
Q ss_pred EEEecchhhhh--------c-------ccc--------------C---CCCcCCcccccccchhhhhcCCchh-HHHHHh
Q 003154 315 LTTVSNIEILT--------S-------FQL--------------E---NGQHIRLDLVPAGGPLRVTYEGWPF-LILYHG 361 (843)
Q Consensus 315 iiTtR~~~v~~--------~-------~~~--------------~---~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g 361 (843)
|.+|....... . ++| . ......++..+...+++....|-|- |+.++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55554443211 0 122 0 0000111111222334444556663 333222
Q ss_pred hhhH------------HHHHHhhhcccccchhhccCCCchhhhhHHhhhccCC--CCCccChhhHHHHH--HHcCC-CCC
Q 003154 362 SLSL------------EENREKILAEPFGDQVLTYSKFPLYFKLCGLYLSVFP--LHSEISARQLYQLW--IAEGF-VRD 424 (843)
Q Consensus 362 ~~L~------------~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~Li~~w--iaeg~-i~~ 424 (843)
.+.. +.+......-......-+...||.+.|..+..++..- .+..+...++...+ +++.+ +.+
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 328 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDP 328 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCC
Confidence 2211 0000000000023334456789988886666554211 33445666665522 12211 223
Q ss_pred ChHHHHHHHHHHHHhcCCeEEEEe
Q 003154 425 NSEATAEEILEELIDRGFIQVKRR 448 (843)
Q Consensus 425 ~~~~~~~~~~~~L~~rsll~~~~~ 448 (843)
..+.....+++.|...|++.....
T Consensus 329 ~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 329 LTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEE
Confidence 367788899999999999997653
No 28
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=4e-08 Score=122.52 Aligned_cols=270 Identities=16% Similarity=0.131 Sum_probs=160.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-CChHHHHHHHHHHh
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-YQPDSLLDNIIKFL 253 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l 253 (843)
..+|-|+.-.+. |.. ....+++.|.|++|.||||++.+.... ++.++|+++... -+...+...++..+
T Consensus 14 ~~~~~R~rl~~~----l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERLLAK----LSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHHHHH----Hhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 355656544444 433 235789999999999999999998752 236999999754 45666777777777
Q ss_pred CCCCCC--cc-------ccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCch--h-hHHHHHhcCCCCCCcEEEEEec
Q 003154 254 MPSSKL--SE-------VMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTND--V-WEFIQEILPDNLNGSRVLTTVS 319 (843)
Q Consensus 254 ~~~~~~--~~-------~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~--~-~~~l~~~~~~~~~gs~iiiTtR 319 (843)
...... +. ....+...+. ..+...+. +.+++|||||+...+ . .+.+...++....+.++|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLF--AQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHH--HHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 431110 00 0001222233 33333332 678999999996542 2 2233333444445678999999
Q ss_pred chhhhh--c-------c--c----cCC--------CCc-CCcccccccchhhhhcCCchhHHHHHhhhhHHHH------H
Q 003154 320 NIEILT--S-------F--Q----LEN--------GQH-IRLDLVPAGGPLRVTYEGWPFLILYHGSLSLEEN------R 369 (843)
Q Consensus 320 ~~~v~~--~-------~--~----~~~--------~~~-~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~~------~ 369 (843)
...-.. . . . +.. ... ..+--.+...+|.+.|+|.|+++..++..+...- .
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~ 240 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSA 240 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhh
Confidence 842111 0 0 1 100 000 0111223457899999999999998887765210 0
Q ss_pred Hhh----hcccccch-hhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeE
Q 003154 370 EKI----LAEPFGDQ-VLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQ 444 (843)
Q Consensus 370 ~~~----~~~~~~~l-~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~ 444 (843)
..+ ...+...+ .--++.||++.+..++..|+++ .++.+.+-... | .+.+...+++|.+.+++.
T Consensus 241 ~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~------~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 241 RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G------EENGQMRLEELERQGLFI 308 (903)
T ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C------CCcHHHHHHHHHHCCCee
Confidence 111 11122222 2237899999999999999987 33433222111 2 124578899999999975
Q ss_pred EEEeCCCCcEeEEEcCcchHHHHHHhhh
Q 003154 445 VKRRKASGTIKTCSFSSLVWPTILAVAC 472 (843)
Q Consensus 445 ~~~~~~~~~~~~~~mhdlv~~~a~~~~~ 472 (843)
....+ .+ ..|++|++++++......
T Consensus 309 ~~~~~-~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 309 QRMDD-SG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred EeecC-CC--CEEehhHHHHHHHHHHHH
Confidence 43221 11 358889999999887653
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=1.4e-10 Score=119.62 Aligned_cols=246 Identities=17% Similarity=0.149 Sum_probs=174.8
Q ss_pred cccceEEEEEeeCCCCCcccccc---ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCC-CCCCCCch-hccCC
Q 003154 488 SRKRVRRFCANVNLGELDSFDRL---DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGS-LFLDQYPA-GIENL 562 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~-~~~~~lp~-~i~~L 562 (843)
.|...--+-+. .+.+..+|+.. .++||-|.+..+... .+-+..|.+++.|..|-+.+ |.|+.+|+ .|++|
T Consensus 65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEec-cCCcccCChhhccchhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45666667777 55555566554 788999998888873 56778999999988888777 88999995 57899
Q ss_pred CCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhcccccccccccccc-cCCCCCCCC----------
Q 003154 563 SRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLIT-LPAHPGKYC---------- 630 (843)
Q Consensus 563 ~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~-l~~~~~~~l---------- 630 (843)
..|+.|.+.-|.+..++...|..|++|..|.+.+|.+..++. .+..+.+++++++..|. +..|.+|.+
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 999999999999999999888999999999999999999987 68899999999988776 334433311
Q ss_pred --------------------------CCccccccc---cccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCC
Q 003154 631 --------------------------SSLENLNFI---SALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGL 681 (843)
Q Consensus 631 --------------------------~~L~~L~~~---~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l 681 (843)
.+++.+..- .+.-........+..+++|++|++++ |.....-..++.+.
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn--N~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN--NKITRIEDGAFEGA 297 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC--Cccchhhhhhhcch
Confidence 111111000 00001111222366777777777776 65555555667777
Q ss_pred CCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeeccc
Q 003154 682 SCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNS 745 (843)
Q Consensus 682 ~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 745 (843)
..++.|.|..|. |+.+.- -+..+ +.|+.|+|.+|+++...|..|..+.+|..|.|-.|.
T Consensus 298 a~l~eL~L~~N~----l~~v~~~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 298 AELQELYLTRNK----LEFVSSGMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhcCcch----HHHHHHHhhhcc-ccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 777777776543 221110 12245 788899999999988888888899999999887654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=1.1e-09 Score=111.77 Aligned_cols=253 Identities=18% Similarity=0.163 Sum_probs=161.5
Q ss_pred hHHHhccCCcccEEEcCCCCCC-----CCchhccCCCCccEEEccCC----CCcccchhH------hhCCccCcEEeCCC
Q 003154 532 SMKICKMFKFLRVLDLGSLFLD-----QYPAGIENLSRLRYLKLNIP----SLKSLPSSL------LSNLLNLYTLDMPS 596 (843)
Q Consensus 532 ~~~~~~~~~~LrvL~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~----~i~~lp~~i------~~~L~~L~~L~L~~ 596 (843)
.......+..+..|+|+||.++ .+-..+.+.++|+.-++++- ...++|+.+ +-.+++|++||||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3455677889999999999886 34456677889999999862 122555543 24667999999999
Q ss_pred CcCc--cc---chhhhcccccccccccccccCCCCCCCC-CCccccccccccCCCCCCccccCCCCCCceEeeec--CCc
Q 003154 597 SYID--HT---ADDIWKLNKLRHLNFGLITLPAHPGKYC-SSLENLNFISALHPRCCTPDILGRLPKLGSLQICG--DLN 668 (843)
Q Consensus 597 ~~l~--~l---p~~i~~L~~L~~L~L~~~~l~~~~~~~l-~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~--~~~ 668 (843)
|-+. .+ -.-|.++..|+||+|.+|.+...-...+ ..|..|.. ..-+++-++|+.+.... ..+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~----------~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAV----------NKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHH----------HhccCCCcceEEEEeecccccc
Confidence 9653 22 2336788999999988887764311111 12333321 01155667788887775 112
Q ss_pred chhhhhhHhhcCCCCCCeEEeecCC-CCCCCceEeeccCCCCCCccEEEEecCCCCCCC----cccccCCCCCcEEEeec
Q 003154 669 YYQSLLSKSLHGLSCLESLKLVNES-KMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDP----MPTLEKLPYLQVLKLKQ 743 (843)
Q Consensus 669 ~~~~~l~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~ 743 (843)
.....+...+...+.|+.+.+..|. ..+...-+...+... ++|+.|+|..|.++... ...+..+|+|+.|++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2334556677777888888888765 222222222223344 78888888888776432 23456678899999988
Q ss_pred ccccCCccc----cCCCCCCcccEEEecCcccccc----cccccccccccceEeeecCCC
Q 003154 744 NSYSGRKLA----CGSDGFPKLKVLHLKSMIWLEE----WTMGNEAMPKLECLVVNPCAY 795 (843)
Q Consensus 744 ~~~~~~~~~----~~~~~f~~L~~L~L~~~~~l~~----l~~~~~~lp~L~~L~l~~c~~ 795 (843)
|.+...... .....+|+|+.|.+.+|..-.+ +.......|.|+.|++++|..
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 877654321 1123488999999988763221 222345689999999999985
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=8e-09 Score=99.30 Aligned_cols=128 Identities=24% Similarity=0.263 Sum_probs=43.8
Q ss_pred ccCCcccEEEcCCCCCCCCchhcc-CCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhh-ccccccc
Q 003154 537 KMFKFLRVLDLGSLFLDQYPAGIE-NLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIW-KLNKLRH 614 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~ 614 (843)
.+...+|.|+|+++.+..+. .++ .+.+|+.|++++|.|+.++. + ..+++|++|++++|.+..++..+. .+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34446788888888877653 455 57788888888888888764 4 778888888888888888866553 6888888
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhh---hhhHhhcCCCCCCeEEee
Q 003154 615 LNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQS---LLSKSLHGLSCLESLKLV 690 (843)
Q Consensus 615 L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~l~~~l~~l~~L~~L~l~ 690 (843)
|++++|.+.. +.. +.. +..+++|+.|++.+ |.... .-...+..+++|+.|+-.
T Consensus 93 L~L~~N~I~~--------l~~------------l~~-L~~l~~L~~L~L~~--NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISD--------LNE------------LEP-LSSLPKLRVLSLEG--NPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---S--------CCC------------CGG-GGG-TT--EEE-TT---GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCC--------hHH------------hHH-HHcCCCcceeeccC--CcccchhhHHHHHHHHcChhheeCCE
Confidence 8887777654 111 112 56677777777776 32221 112344556666666543
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=1.1e-09 Score=114.22 Aligned_cols=289 Identities=18% Similarity=0.157 Sum_probs=159.1
Q ss_pred ceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC-CC--CCchhccCCCCccEEEccC-CCCcccc-hhHhhCCc
Q 003154 513 YLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF-LD--QYPAGIENLSRLRYLKLNI-PSLKSLP-SSLLSNLL 587 (843)
Q Consensus 513 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-~~--~lp~~i~~L~~Lr~L~L~~-~~i~~lp-~~i~~~L~ 587 (843)
.+|.|.+.|..... ..-+..+...++++..|++.++. ++ .+..--..+.+|++|++.. ..|+... ..+...++
T Consensus 139 ~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 34555555554431 22344556677777777777764 22 1111223566777777766 3344221 12225677
Q ss_pred cCcEEeCCCC-cCcc--cchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeee
Q 003154 588 NLYTLDMPSS-YIDH--TADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQIC 664 (843)
Q Consensus 588 ~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 664 (843)
+|.+|++++| .+.. +..-...+.+|+.+.+ .+|.-. .++.|... -+.+..+.++++.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~-----kGC~e~---~le~l~~~------------~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSL-----KGCLEL---ELEALLKA------------AAYCLEILKLNLQ 276 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhh-----cccccc---cHHHHHHH------------hccChHhhccchh
Confidence 7777777777 4433 2222333334444431 121000 01111100 0111222233322
Q ss_pred cCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeec-c-CCCCCCccEEEEecCC-CCCCCccccc-CCCCCcEEE
Q 003154 665 GDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLF-E-NQFPPSLTHLSFSNTD-LIDDPMPTLE-KLPYLQVLK 740 (843)
Q Consensus 665 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~-~-~~lp~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~ 740 (843)
.+.......+...-..+..|+.|..+ ++.++....+| + .+- ++|+.|.+++|+ ++......++ +.+.|+.|+
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s---~~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYS---SCTDITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhccc---CCCCCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 22111112222222345566666666 33444444332 1 122 778888888884 4444455555 688999999
Q ss_pred eecccccCC-ccccCCCCCCcccEEEecCccccccc-----ccccccccccceEeeecCCCCCC-CCccccCCCCCcEEE
Q 003154 741 LKQNSYSGR-KLACGSDGFPKLKVLHLKSMIWLEEW-----TMGNEAMPKLECLVVNPCAYLKR-LPEHLWCMKNFKKLE 813 (843)
Q Consensus 741 L~~~~~~~~-~~~~~~~~f~~L~~L~L~~~~~l~~l-----~~~~~~lp~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~ 813 (843)
+.++..... .+.....++|.|+.|.+++|..+++- .....++..|+.|.+.+||.+.. .-..+.++++|+.++
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 987765433 24445567999999999998866654 33345788999999999997652 334677899999999
Q ss_pred ecCCCHHHHHhccc
Q 003154 814 LWWPQPELRQKMRD 827 (843)
Q Consensus 814 l~~~~~~~~~~~~~ 827 (843)
+.+|..-..+.+++
T Consensus 433 l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 433 LIDCQDVTKEAISR 446 (483)
T ss_pred eechhhhhhhhhHH
Confidence 99999766666655
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.8e-08 Score=112.83 Aligned_cols=180 Identities=28% Similarity=0.313 Sum_probs=121.4
Q ss_pred HhccCCcccEEEcCCCCCCCCchhccCCC-CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccc
Q 003154 535 ICKMFKFLRVLDLGSLFLDQYPAGIENLS-RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLR 613 (843)
Q Consensus 535 ~~~~~~~LrvL~L~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 613 (843)
....++.+..|++.++.+.++|..++.+. +|++|++++|.+..+|..+ +.+++|+.|++++|.+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhh
Confidence 34455789999999999999998888885 9999999999999998777 999999999999999999998888999999
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC
Q 003154 614 HLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES 693 (843)
Q Consensus 614 ~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 693 (843)
.|++++|.+...... ++....|+.|.+.+ |. ....+..+..+.++..|.+..+.
T Consensus 190 ~L~ls~N~i~~l~~~-----------------------~~~~~~L~~l~~~~--N~-~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 190 NLDLSGNKISDLPPE-----------------------IELLSALEELDLSN--NS-IIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred heeccCCccccCchh-----------------------hhhhhhhhhhhhcC--Cc-ceecchhhhhcccccccccCCce
Confidence 999888887652111 12233344444443 21 11222334444444444433221
Q ss_pred CCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccC
Q 003154 694 KMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 694 ~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
+..+.-.+..+ ++++.|++++|.++.. +.++.+.+|+.|+++++.+..
T Consensus 244 ----~~~~~~~~~~l-~~l~~L~~s~n~i~~i--~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 244 ----LEDLPESIGNL-SNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ----eeeccchhccc-cccceecccccccccc--ccccccCccCEEeccCccccc
Confidence 11111133444 6677777777776432 227777788888887766553
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.6e-09 Score=110.95 Aligned_cols=205 Identities=20% Similarity=0.160 Sum_probs=97.9
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC---CCchhccCCCCccEEEccCCCCcccchhH-hhCC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD---QYPAGIENLSRLRYLKLNIPSLKSLPSSL-LSNL 586 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~---~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~~L 586 (843)
.++||...+.+....... .......|+++|.|||+.|-+. .+-.-...|++|+.|+++.|.+.....+. -..+
T Consensus 120 ~kkL~~IsLdn~~V~~~~---~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAG---IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccc---hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 455666655555443110 0134556666666666666443 22333445666666666666554222211 1345
Q ss_pred ccCcEEeCCCCcCc--ccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeee
Q 003154 587 LNLYTLDMPSSYID--HTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQIC 664 (843)
Q Consensus 587 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 664 (843)
.+|+.|.|++|.+. .+-.-+..+|+|..|+|..|..- ...... ...+..|+.|+++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~---------------------~~~~~~-~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII---------------------LIKATS-TKILQTLQELDLS 254 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc---------------------ceecch-hhhhhHHhhcccc
Confidence 66666666666553 22222334556666664444210 000011 3344567777777
Q ss_pred cCCcchh-hhhhHhhcCCCCCCeEEeecCCCCCCCceEeec-------cCCCCCCccEEEEecCCCCC-CCcccccCCCC
Q 003154 665 GDLNYYQ-SLLSKSLHGLSCLESLKLVNESKMPRLSKIVLF-------ENQFPPSLTHLSFSNTDLID-DPMPTLEKLPY 735 (843)
Q Consensus 665 ~~~~~~~-~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~-------~~~lp~~L~~L~L~~~~l~~-~~~~~l~~l~~ 735 (843)
+ |... ......++.++.|+.|+++.++ +.++.+. ...+ ++|++|++..|++.+ .....+..+++
T Consensus 255 ~--N~li~~~~~~~~~~l~~L~~Lnls~tg----i~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 255 N--NNLIDFDQGYKVGTLPGLNQLNLSSTG----IASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred C--CcccccccccccccccchhhhhccccC----cchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccch
Confidence 6 3221 1112344566666666666543 2222210 1234 666666666665422 22333444556
Q ss_pred CcEEEeeccccc
Q 003154 736 LQVLKLKQNSYS 747 (843)
Q Consensus 736 L~~L~L~~~~~~ 747 (843)
|+.|.+..|.+.
T Consensus 328 lk~l~~~~n~ln 339 (505)
T KOG3207|consen 328 LKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccccc
Confidence 666665544443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=2.6e-08 Score=95.74 Aligned_cols=107 Identities=23% Similarity=0.237 Sum_probs=45.1
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhc-cCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICK-MFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 589 (843)
+.++|.|.+.++.... .. -+. .+.+|++|||++|.+..++ .+..|++|+.|++++|.|+.+++.+...+++|
T Consensus 18 ~~~~~~L~L~~n~I~~-----Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----IE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-----cc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 4567778887777642 11 233 5789999999999999886 68889999999999999999987663579999
Q ss_pred cEEeCCCCcCcccc--hhhhcccccccccccccccCC
Q 003154 590 YTLDMPSSYIDHTA--DDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 590 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~l~~ 624 (843)
++|++++|.|..+- ..+..+++|++|++.+|.+..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99999999887662 457889999999988888754
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=2.2e-09 Score=115.76 Aligned_cols=176 Identities=24% Similarity=0.281 Sum_probs=131.0
Q ss_pred HHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccc
Q 003154 534 KICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLR 613 (843)
Q Consensus 534 ~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 613 (843)
.-+..|-.|..|.|+.|.+..+|..+++|..|.||+|+.|++..+|..+ +.|+ |+.|-+++|++..+|..++.+..|.
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLA 169 (722)
T ss_pred hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHH
Confidence 4455667788888888888888888888888899999888888888887 6665 8888888888888888888888888
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC
Q 003154 614 HLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES 693 (843)
Q Consensus 614 ~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 693 (843)
+|+.+.|.+.. ...+ ++.+.+|+.|.+.. | ....+|..+..+ .|..|++++|
T Consensus 170 ~ld~s~nei~s----------------------lpsq-l~~l~slr~l~vrR--n-~l~~lp~El~~L-pLi~lDfScN- 221 (722)
T KOG0532|consen 170 HLDVSKNEIQS----------------------LPSQ-LGYLTSLRDLNVRR--N-HLEDLPEELCSL-PLIRLDFSCN- 221 (722)
T ss_pred Hhhhhhhhhhh----------------------chHH-hhhHHHHHHHHHhh--h-hhhhCCHHHhCC-ceeeeecccC-
Confidence 88865555432 1233 78888888888875 3 445567777644 6788888744
Q ss_pred CCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccc---cCCCCCcEEEeecc
Q 003154 694 KMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTL---EKLPYLQVLKLKQN 744 (843)
Q Consensus 694 ~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~ 744 (843)
++.++.+.+..+ ..|++|.|.+|.+.. +|..+ |...-.++|+..-|
T Consensus 222 ---kis~iPv~fr~m-~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 222 ---KISYLPVDFRKM-RHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---ceeecchhhhhh-hhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 478888888888 899999999998743 33322 33444567777655
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-09 Score=107.78 Aligned_cols=183 Identities=21% Similarity=0.186 Sum_probs=104.0
Q ss_pred CcEEeCCCCcCc--ccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecC
Q 003154 589 LYTLDMPSSYID--HTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGD 666 (843)
Q Consensus 589 L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 666 (843)
||+|||+...++ .+..-+..+.+|+.|.+.++.+++. +...+.+-.+|+.|+++.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~----------------------I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP----------------------IVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH----------------------HHHHHhccccceeeccccc
Confidence 566666655442 3333455666666666444444321 1122556667777777765
Q ss_pred CcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCC--CCCCCcccc-cCCCCCcEEEeec
Q 003154 667 LNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTD--LIDDPMPTL-EKLPYLQVLKLKQ 743 (843)
Q Consensus 667 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~--l~~~~~~~l-~~l~~L~~L~L~~ 743 (843)
.......+...+.+++.|..|+|+|+.-..-. ...-+.+..++|+.|+|+||. +.......+ ..+|+|..|+|+.
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 55444455556677788888888876411100 111223334788888888874 222223333 4688888888886
Q ss_pred ccccCCccccCCCCCCcccEEEecCccccc-ccccccccccccceEeeecCCC
Q 003154 744 NSYSGRKLACGSDGFPKLKVLHLKSMIWLE-EWTMGNEAMPKLECLVVNPCAY 795 (843)
Q Consensus 744 ~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~-~l~~~~~~lp~L~~L~l~~c~~ 795 (843)
|..........+..|+.|++|.++.|-.+. +--.++..+|+|.+|++.+|-.
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 654332222233457788888888775443 2223456777888888777753
No 38
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.59 E-value=1.8e-06 Score=91.16 Aligned_cols=174 Identities=15% Similarity=0.064 Sum_probs=98.9
Q ss_pred HHHHHHHHHcC-CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccc
Q 003154 184 MEELLDHLIEG-PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEV 262 (843)
Q Consensus 184 ~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 262 (843)
.++++..+... ..+..++.|+|.+|+|||||++.+++.... ..+ ..+|+ +....+..+++..|+..++....
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---- 100 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---- 100 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC----
Confidence 34444444322 223568999999999999999999985321 111 12333 33345778899999988876422
Q ss_pred cccchHHHH-HH-HHHHHH-hCCCeEEEEEcCCCCch--hhHHHHHhcC---CCCCCcEEEEEecchhh---h-------
Q 003154 263 MEDRDYEMR-KI-IHLHGY-LMSKRYLIVLDDVWTND--VWEFIQEILP---DNLNGSRVLTTVSNIEI---L------- 324 (843)
Q Consensus 263 ~~~~~~~~~-~~-~~l~~~-l~~kr~LlVlDdvw~~~--~~~~l~~~~~---~~~~gs~iiiTtR~~~v---~------- 324 (843)
..+..... +. ..+... ..+++++||+||+|... .++.+..... +......|++|....-. .
T Consensus 101 -~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 101 -GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQL 179 (269)
T ss_pred -CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHH
Confidence 11222222 00 333332 26788999999998763 5666553322 11222345565543210 0
Q ss_pred -h--c----ccc---------------CCCCcCCccc-ccccchhhhhcCCchhHHHHHhhhhH
Q 003154 325 -T--S----FQL---------------ENGQHIRLDL-VPAGGPLRVTYEGWPFLILYHGSLSL 365 (843)
Q Consensus 325 -~--~----~~~---------------~~~~~~~~~~-~~~~~~i~~~c~GlPLai~~~g~~L~ 365 (843)
. . ..| .........+ .+..+.|++.++|.|..|..++..+-
T Consensus 180 ~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 180 RQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 0 0 122 0111111223 36778899999999999998888764
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=9e-09 Score=102.51 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=47.1
Q ss_pred cCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCC
Q 003154 679 HGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGF 758 (843)
Q Consensus 679 ~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f 758 (843)
..+++|+.|++++|. |.++.=|...+ .|+++|.|++|.+. ..+.++.+-+|.+|++++|.+....-....+++
T Consensus 326 a~L~~L~~LDLS~N~----Ls~~~Gwh~KL-GNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L 398 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNL----LAECVGWHLKL-GNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNL 398 (490)
T ss_pred hhcccceEeecccch----hHhhhhhHhhh-cCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccc
Confidence 334444445544432 22222244556 67777777777652 345667777778888877766543333334445
Q ss_pred CcccEEEecCcc
Q 003154 759 PKLKVLHLKSMI 770 (843)
Q Consensus 759 ~~L~~L~L~~~~ 770 (843)
|.|++|.|.+|+
T Consensus 399 PCLE~l~L~~NP 410 (490)
T KOG1259|consen 399 PCLETLRLTGNP 410 (490)
T ss_pred cHHHHHhhcCCC
Confidence 555555555544
No 40
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.51 E-value=1.7e-07 Score=100.90 Aligned_cols=249 Identities=16% Similarity=0.063 Sum_probs=136.4
Q ss_pred CceecchHHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 251 (843)
.+|||+++.++++..++... ......+.++|++|+|||+||+.+.+. ....| ..+..+...... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHH
Confidence 46899999999999988642 233566889999999999999999984 33222 122211111122 2223333
Q ss_pred HhCCCCCC--ccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhhh----
Q 003154 252 FLMPSSKL--SEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILT---- 325 (843)
Q Consensus 252 ~l~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~---- 325 (843)
.+....-. .+++..+ .... +.+...+.+.+..+|+|+..+...|.. ++| +.+-|..||+...+..
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~--e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVE--ELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHH--HHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 33321100 0011111 2234 566777777788888888766655432 222 2455666777643332
Q ss_pred -c-----cccC------------CCCcCCcccccccchhhhhcCCchhHHHHHhhhhHHH--------HHHhhhcccccc
Q 003154 326 -S-----FQLE------------NGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSLEE--------NREKILAEPFGD 379 (843)
Q Consensus 326 -~-----~~~~------------~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~--------~~~~~~~~~~~~ 379 (843)
+ ++|. .......--.+....|++.|+|.|-.+..++..+... +...........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 1 1220 0000011113456789999999997665554443211 001111111333
Q ss_pred hhhccCCCchhhhhHHh-hhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHH-HHHhcCCeEEE
Q 003154 380 QVLTYSKFPLYFKLCGL-YLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILE-ELIDRGFIQVK 446 (843)
Q Consensus 380 l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~-~L~~rsll~~~ 446 (843)
+..+|..++++.+.-+. ..+.++.+ .+..+.+.... |- ....++..++ .|++++|+...
T Consensus 229 l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~----~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 229 LMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE----DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC----CcchHHHhhhHHHHHcCCcccC
Confidence 67788999998776555 55666543 45544433322 22 2346677778 69999999743
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=8.1e-09 Score=111.50 Aligned_cols=181 Identities=23% Similarity=0.191 Sum_probs=140.7
Q ss_pred CCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccc
Q 003154 502 GELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLP 579 (843)
Q Consensus 502 ~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp 579 (843)
...+++..+ +-.|.++.+..+... ..+....++..|.+|||+.|.+..+|..++.| -|+.|-+++|+++.+|
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp 159 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLP 159 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCC
Confidence 333456655 778888888877764 34566788999999999999999999999987 5999999999999999
Q ss_pred hhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCc
Q 003154 580 SSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLG 659 (843)
Q Consensus 580 ~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~ 659 (843)
+.+ +.+..|..||.+.|.+..+|..++.|.+|+.|++..|++... .++ +..| .|.
T Consensus 160 ~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l----------------------p~E-l~~L-pLi 214 (722)
T KOG0532|consen 160 EEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL----------------------PEE-LCSL-PLI 214 (722)
T ss_pred ccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC----------------------CHH-HhCC-cee
Confidence 999 999999999999999999999999999999999777776431 223 5533 378
Q ss_pred eEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeecc---CCCCCCccEEEEecCC
Q 003154 660 SLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFE---NQFPPSLTHLSFSNTD 721 (843)
Q Consensus 660 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~---~~lp~~L~~L~L~~~~ 721 (843)
+|++++ .....+|..+.+++.|+.|.|.+|. |++-...+ +.. .-.++|++.-|+
T Consensus 215 ~lDfSc---Nkis~iPv~fr~m~~Lq~l~LenNP----LqSPPAqIC~kGkV-HIFKyL~~qA~q 271 (722)
T KOG0532|consen 215 RLDFSC---NKISYLPVDFRKMRHLQVLQLENNP----LQSPPAQICEKGKV-HIFKYLSTQACQ 271 (722)
T ss_pred eeeccc---CceeecchhhhhhhhheeeeeccCC----CCCChHHHHhccce-eeeeeecchhcc
Confidence 888884 4566789999999999999999875 22221111 122 345677777774
No 42
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=2.1e-07 Score=95.29 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC--CChHHHHHHHHHHhCCCC-CCcccc-ccchHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL--YQPDSLLDNIIKFLMPSS-KLSEVM-EDRDYEMRKI 273 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~-~~~~~~-~~~~~~~~~~ 273 (843)
-..++|+|.+|+|||||++.+|++.... +|+.++|+++++. +++.++++++...+-... +.+... ..-.....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~-- 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL-- 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH--
Confidence 4678999999999999999999975444 8999999998776 799999999833322211 000000 00011111
Q ss_pred HHHHHH-hCCCeEEEEEcCCCC
Q 003154 274 IHLHGY-LMSKRYLIVLDDVWT 294 (843)
Q Consensus 274 ~~l~~~-l~~kr~LlVlDdvw~ 294 (843)
.....+ -+++++++++|++-.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 358999999999943
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.7e-07 Score=104.90 Aligned_cols=194 Identities=26% Similarity=0.351 Sum_probs=146.0
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCc-cCcEEeCCCCcCcccchhhhcccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLL-NLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLIT 621 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 621 (843)
..|++..+.+...+..+..+..+..|++.++.++.+|+.. +.+. +|+.|+++++.+..+|..++.+++|+.|+++.|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3688888887666667778889999999999999999988 7775 9999999999999999889999999999988877
Q ss_pred cCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceE
Q 003154 622 LPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKI 701 (843)
Q Consensus 622 l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L 701 (843)
+.. ++...+.+++|+.|++++ + ....+|..+.....|++|.++.|. +...
T Consensus 175 l~~-----------------------l~~~~~~~~~L~~L~ls~--N-~i~~l~~~~~~~~~L~~l~~~~N~----~~~~ 224 (394)
T COG4886 175 LSD-----------------------LPKLLSNLSNLNNLDLSG--N-KISDLPPEIELLSALEELDLSNNS----IIEL 224 (394)
T ss_pred hhh-----------------------hhhhhhhhhhhhheeccC--C-ccccCchhhhhhhhhhhhhhcCCc----ceec
Confidence 654 122133778888999986 4 344455555556678999888653 1112
Q ss_pred eeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccc
Q 003154 702 VLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWL 772 (843)
Q Consensus 702 ~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l 772 (843)
......+ .++..|.+.++++. ..+..++.+++|+.|++++|.+..... ...+.+|+.|+++++...
T Consensus 225 ~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 225 LSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhhhhc-ccccccccCCceee-eccchhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 1133445 67777777777653 336778899999999999887765332 566889999999987643
No 44
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=7e-07 Score=86.52 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=67.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccc----CCeeEEEEeCCCCChH---HHHHHHHHHhCCCCCCccccccchHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHY----FDCKAWVPVSILYQPD---SLLDNIIKFLMPSSKLSEVMEDRDYEMR 271 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 271 (843)
+++.|+|.+|+||||+++.++..-..... +...+|+......... .+...|..+...... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------~~~ 70 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA----------PIE 70 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh----------hhH
Confidence 57899999999999999999985322222 4567777765543322 344444444332111 111
Q ss_pred HHHHHHHH-hCCCeEEEEEcCCCCchh---------hHH-HHHhcCC-CCCCcEEEEEecchhh
Q 003154 272 KIIHLHGY-LMSKRYLIVLDDVWTNDV---------WEF-IQEILPD-NLNGSRVLTTVSNIEI 323 (843)
Q Consensus 272 ~~~~l~~~-l~~kr~LlVlDdvw~~~~---------~~~-l~~~~~~-~~~gs~iiiTtR~~~v 323 (843)
..+... -+.++++||+|++++... +.. +...++. ..++.+||||||....
T Consensus 71 --~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 71 --ELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred --HHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 111122 257899999999975421 222 2223332 3568999999998766
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=7.6e-08 Score=96.03 Aligned_cols=135 Identities=23% Similarity=0.219 Sum_probs=92.9
Q ss_pred cCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCccccc
Q 003154 652 LGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLE 731 (843)
Q Consensus 652 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~ 731 (843)
+.....|+.|++++ | ....+..++.-.+.++.|+++.|+ +.... ....+ ++|+.|+|++|.++ ....+-.
T Consensus 280 ~dTWq~LtelDLS~--N-~I~~iDESvKL~Pkir~L~lS~N~----i~~v~-nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSG--N-LITQIDESVKLAPKLRRLILSQNR----IRTVQ-NLAEL-PQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred cchHhhhhhccccc--c-chhhhhhhhhhccceeEEeccccc----eeeeh-hhhhc-ccceEeecccchhH-hhhhhHh
Confidence 66667788888886 4 334455667777888999988765 22221 12345 88999999998764 3334445
Q ss_pred CCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc--ccccccccccceEeeecCCCCCCCCc
Q 003154 732 KLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW--TMGNEAMPKLECLVVNPCAYLKRLPE 801 (843)
Q Consensus 732 ~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l--~~~~~~lp~L~~L~l~~c~~l~~lp~ 801 (843)
.+-|.+.|.|++|.+..- ...+.+-+|..|++++|. ++.+ ...+|++|.|++|.+.+||. ..+|+
T Consensus 350 KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl-~~~vd 416 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL-AGSVD 416 (490)
T ss_pred hhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc-cccch
Confidence 688889999998876531 223446678899998875 5544 23578999999999999994 44444
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.44 E-value=1.3e-06 Score=94.73 Aligned_cols=250 Identities=15% Similarity=0.018 Sum_probs=133.9
Q ss_pred CCceecchHHHHHHHHHHHc---CCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIE---GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 250 (843)
-.+|+|+++.++.+..++.. .......+.|+|++|+||||||+.+++. ....| .++..+ .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 35799999999999888764 2334667889999999999999999984 33222 112111 112222233444
Q ss_pred HHhCCCCCC--ccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhhh---
Q 003154 251 KFLMPSSKL--SEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILT--- 325 (843)
Q Consensus 251 ~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~--- 325 (843)
..+....-. .+++..+ .... +.+...+.+.+..+|+|+..+...+. ..+| +.+-|..|||...+..
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~--e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVE--EILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHH--HHHHHHHHhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHH
Confidence 443321100 0001111 1223 45556666667777777765443221 1112 2455666776543332
Q ss_pred --c-----ccc------------CCCCcCCcccccccchhhhhcCCchhHHHHHhhhhHHH-HH-------Hhhhccccc
Q 003154 326 --S-----FQL------------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSLEE-NR-------EKILAEPFG 378 (843)
Q Consensus 326 --~-----~~~------------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~-------~~~~~~~~~ 378 (843)
+ ++| ........--.+....|++.|+|.|-.+..+...+..- .. .....+...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 1 122 00000111122457899999999996444444333210 00 001111145
Q ss_pred chhhccCCCchhhhhHHh-hhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHH-HHHhcCCeEEE
Q 003154 379 DQVLTYSKFPLYFKLCGL-YLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILE-ELIDRGFIQVK 446 (843)
Q Consensus 379 ~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~-~L~~rsll~~~ 446 (843)
.+...|..|++..+.-+. ....|+.+ .+..+.+.... |. ..+.++..++ .|++.+|++..
T Consensus 249 ~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~----~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 249 MLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE----ERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC----CcchHHHHhhHHHHHcCCcccC
Confidence 567788889887776664 56667765 45555543332 22 2345666666 89999999743
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.3e-07 Score=74.57 Aligned_cols=57 Identities=37% Similarity=0.492 Sum_probs=27.2
Q ss_pred cccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCC
Q 003154 541 FLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSS 597 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~ 597 (843)
+|++|++++|.+..+|. .+..+++|++|++++|.++.+|+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34445555554444442 3344455555555555554444444444555555554444
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.2e-07 Score=74.75 Aligned_cols=60 Identities=30% Similarity=0.388 Sum_probs=54.8
Q ss_pred CCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhccccccccccccccc
Q 003154 563 SRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLITL 622 (843)
Q Consensus 563 ~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~l 622 (843)
++|++|++++|.+..+|+..|.++++|++|++++|.+..+|. .+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 479999999999999999888999999999999999999965 689999999999888764
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=2.5e-06 Score=80.53 Aligned_cols=123 Identities=18% Similarity=0.123 Sum_probs=73.9
Q ss_pred ecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCC
Q 003154 178 VGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSS 257 (843)
Q Consensus 178 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 257 (843)
+|++..++++...+.... ...+.|+|.+|+||||+++.+++. ....-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 478888999998887643 568889999999999999999984 32222346666655443322211111000
Q ss_pred CCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--h---hhHHHHHhcCCC---CCCcEEEEEecchh
Q 003154 258 KLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--D---VWEFIQEILPDN---LNGSRVLTTVSNIE 322 (843)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~---~~~~l~~~~~~~---~~gs~iiiTtR~~~ 322 (843)
... .........+..+||+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 -----------~~~--~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVR--LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHh--HHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000 1122233457789999999864 2 223323333221 35788888888653
No 50
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.39 E-value=3.6e-07 Score=97.23 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=62.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC--ChHHHHHHHHHHhCCCC--CCcccc-ccchHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY--QPDSLLDNIIKFLMPSS--KLSEVM-EDRDYEMRK 272 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~--~~~~~~-~~~~~~~~~ 272 (843)
=+..+|+|.+|+||||||+.||++.... +|+.++||.+++.+ .+.+++++|...+-.+. ..+... ......+.+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999964444 89999999999988 78888888863221111 100000 000112222
Q ss_pred HHHHHHHhCCCeEEEEEcCCCC
Q 003154 273 IIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 273 ~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
|..++ -.+++++|++|++-.
T Consensus 248 Ae~~~--e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLV--EHGKDVVILLDSITR 267 (416)
T ss_pred HHHHH--HcCCCEEEEEEChHH
Confidence 23333 368999999999943
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=1e-06 Score=81.69 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=78.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc-----CCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-----FDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRK 272 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 272 (843)
-+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...|+..++.... ...+.+++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~- 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELR- 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHH-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHH-
Confidence 568999999999999999999984 2221 2357799988888999999999999997543 234567777
Q ss_pred HHHHHHHhCCC-eEEEEEcCCCCc---hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 273 IIHLHGYLMSK-RYLIVLDDVWTN---DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 273 ~~~l~~~l~~k-r~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
+.+.+.+... ..+||+||+... +.++.+..... ..+.+||++.+.
T Consensus 77 -~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 -SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp -HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred -HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7778777654 469999999654 23444544333 567788877665
No 52
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=9.6e-07 Score=87.38 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=33.9
Q ss_pred ceecchHHHHHHHHHHHc-CCCCceEEEEEcCCCChHHHHHHHHhcCcccccc
Q 003154 176 DIVGLDDKMEELLDHLIE-GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY 227 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~ 227 (843)
.||||+++.+++...|.. .....+.+.|+|.+|+|||+|+++++.. ....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~--~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR--LAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH--HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH--HHhc
Confidence 489999999999999942 2345799999999999999999999984 4444
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=6.7e-08 Score=98.96 Aligned_cols=240 Identities=20% Similarity=0.195 Sum_probs=140.9
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC----CCch-------hccCCCCccEEEccCCCCc-cc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD----QYPA-------GIENLSRLRYLKLNIPSLK-SL 578 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~----~lp~-------~i~~L~~Lr~L~L~~~~i~-~l 578 (843)
...+..+.+.|+....--..+....+.+.+.||.-++++...+ ++|. .+-.+++|++|+||.|-+. .-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 5566777777776542112245567788889999999875432 4443 4456779999999999776 22
Q ss_pred ch---hHhhCCccCcEEeCCCCcCcccchh--------------hhcccccccccccccccCCCCCCCCCCccccccccc
Q 003154 579 PS---SLLSNLLNLYTLDMPSSYIDHTADD--------------IWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISA 641 (843)
Q Consensus 579 p~---~i~~~L~~L~~L~L~~~~l~~lp~~--------------i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~ 641 (843)
++ .++.++..|+.|.|.+|.+...-.. +.+-++||.+..++|++.....
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga-------------- 174 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA-------------- 174 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH--------------
Confidence 22 2247899999999999987543211 2334567777766666654211
Q ss_pred cCCCCCCccccCCCCCCceEeeecCCc--chhhhhhHhhcCCCCCCeEEeecCCCCCCCce--EeeccCCCCCCccEEEE
Q 003154 642 LHPRCCTPDILGRLPKLGSLQICGDLN--YYQSLLSKSLHGLSCLESLKLVNESKMPRLSK--IVLFENQFPPSLTHLSF 717 (843)
Q Consensus 642 ~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~--L~l~~~~lp~~L~~L~L 717 (843)
..+...+...+.|+.+.+....- .-...+...+..+++|+.|+|..|. ++..-. |.-....+ ++|+.|++
T Consensus 175 ----~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~-~~L~El~l 248 (382)
T KOG1909|consen 175 ----TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW-PHLRELNL 248 (382)
T ss_pred ----HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc-chheeecc
Confidence 11122244455566555553111 0112344556666777777776553 000000 00022344 67888888
Q ss_pred ecCCCCCCCcccc-----cCCCCCcEEEeecccccCCc---cccCCCCCCcccEEEecCcc
Q 003154 718 SNTDLIDDPMPTL-----EKLPYLQVLKLKQNSYSGRK---LACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 718 ~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~f~~L~~L~L~~~~ 770 (843)
++|.+.......+ ...|+|+.|.+.+|.++... +.......|.|+.|.|++|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8887765433222 24788888888888765322 22233447888888888876
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=6.6e-07 Score=89.53 Aligned_cols=91 Identities=25% Similarity=0.223 Sum_probs=61.4
Q ss_pred hHHHhccCCcccEEEcCCCCCC---CCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcC--cccchhh
Q 003154 532 SMKICKMFKFLRVLDLGSLFLD---QYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYI--DHTADDI 606 (843)
Q Consensus 532 ~~~~~~~~~~LrvL~L~~~~~~---~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l--~~lp~~i 606 (843)
...+-..++.++.|||.+|.+. ++-.-+.+|++|++|+++.|.+..-..+.--.+.+|++|-|.++.+ ......+
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 3455567788888888888776 3344456788888888888865522221102456888888888854 4555667
Q ss_pred hccccccccccccccc
Q 003154 607 WKLNKLRHLNFGLITL 622 (843)
Q Consensus 607 ~~L~~L~~L~L~~~~l 622 (843)
..+|+++.|+++.|.+
T Consensus 143 ~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSL 158 (418)
T ss_pred hcchhhhhhhhccchh
Confidence 7888888888666654
No 55
>PF13173 AAA_14: AAA domain
Probab=98.24 E-value=2.1e-06 Score=79.16 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
-+++.|.|..|+|||||+++++.+.. ....++++........... +.+ .. +.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~--~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LL--EYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hH--HHHH
Confidence 46899999999999999999997422 3345666665543221100 000 22 3444
Q ss_pred HHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 278 GYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
+....++.+|+||++....+|......+-+..+..+|++|+.+....
T Consensus 56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 44445788999999998888888877777666678999999877654
No 56
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.18 E-value=9.3e-05 Score=85.03 Aligned_cols=268 Identities=16% Similarity=0.116 Sum_probs=161.6
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-CChHHHHHHHHHHhCCCCC--Ccc
Q 003154 185 EELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-YQPDSLLDNIIKFLMPSSK--LSE 261 (843)
Q Consensus 185 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~--~~~ 261 (843)
.++++.|..+ .+.+++.|.-++|.|||||+-.... +. ..=..+.|.+.+.+ -++..+.+.++..++.-.+ .+.
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 4556666554 3589999999999999999999875 11 12235899998775 4677888888888874211 000
Q ss_pred -------ccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCC---chhhHHHHHhcCCCCCCcEEEEEecchhhhh----
Q 003154 262 -------VMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWT---NDVWEFIQEILPDNLNGSRVLTTVSNIEILT---- 325 (843)
Q Consensus 262 -------~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~---~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~---- 325 (843)
....+...+. ..+..-+. .+...+||||-.- ..--+.+...+....++=..|||||+.--..
T Consensus 101 a~~l~q~~~~~~l~~l~--~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~l 178 (894)
T COG2909 101 AQTLLQKHQYVSLESLL--SSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARL 178 (894)
T ss_pred HHHHHHhcccccHHHHH--HHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccce
Confidence 0112223333 44444333 4678999999643 2222233333334445779999999864333
Q ss_pred cccc----------CCC----------CcCCcccccccchhhhhcCCchhHHHHHhhhhH-----HHHHHhhh---cccc
Q 003154 326 SFQL----------ENG----------QHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSL-----EENREKIL---AEPF 377 (843)
Q Consensus 326 ~~~~----------~~~----------~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~-----~~~~~~~~---~~~~ 377 (843)
..++ ..+ ....+--....+.+.+...|-+-|+..++=.++ ......+. ..+.
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~ 258 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLS 258 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHH
Confidence 1111 111 111122234457788888888888777776665 11111100 0010
Q ss_pred c-chhhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCcEeE
Q 003154 378 G-DQVLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQVKRRKASGTIKT 456 (843)
Q Consensus 378 ~-~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~~~~~~~~~~~~~ 456 (843)
+ ...--++.||+++|.-.+-||+++.-. .+|+..-.+ ++.|...+++|.+++|+-..-.+.. ..
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Ltg--------~~ng~amLe~L~~~gLFl~~Ldd~~---~W 323 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALTG--------EENGQAMLEELERRGLFLQRLDDEG---QW 323 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHhc--------CCcHHHHHHHHHhCCCceeeecCCC---ce
Confidence 0 112235789999999999999987522 344443333 4578889999999998875432222 57
Q ss_pred EEcCcchHHHHHHhhhc
Q 003154 457 CSFSSLVWPTILAVACT 473 (843)
Q Consensus 457 ~~mhdlv~~~a~~~~~~ 473 (843)
|+.|.+..||-......
T Consensus 324 fryH~LFaeFL~~r~~~ 340 (894)
T COG2909 324 FRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eehhHHHHHHHHhhhcc
Confidence 99999999998766554
No 57
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.15 E-value=4.6e-06 Score=88.37 Aligned_cols=235 Identities=16% Similarity=0.092 Sum_probs=149.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCe-eEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDC-KAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
..+.+.++|.|||||||++-.+.. +...|.. +.++....--+...+.-.....++.... +-+... ..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~--~~ 80 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAV--DT 80 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHH--HH
Confidence 478899999999999999999987 6777855 4455444433444444444444554321 112333 57
Q ss_pred HHHHhCCCeEEEEEcCCCCc-hhhHHHHHhcCCCCCCcEEEEEecchhhhh---cc-cc----C---------------C
Q 003154 276 LHGYLMSKRYLIVLDDVWTN-DVWEFIQEILPDNLNGSRVLTTVSNIEILT---SF-QL----E---------------N 331 (843)
Q Consensus 276 l~~~l~~kr~LlVlDdvw~~-~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~---~~-~~----~---------------~ 331 (843)
+..+..++|.++|+||.... ++-..+...+..+...-.|+.|+|..-... .+ .| . .
T Consensus 81 ~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 81 LVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 77888999999999998544 222333334444455567888888766554 11 11 0 0
Q ss_pred CCcCCcccccccchhhhhcCCchhHHHHHhhhhH----HHHHHhhhccc-----------------ccchhhccCCCchh
Q 003154 332 GQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSL----EENREKILAEP-----------------FGDQVLTYSKFPLY 390 (843)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~----~~~~~~~~~~~-----------------~~~l~~sy~~L~~~ 390 (843)
.......-.....+|.++..|.|++|...++..+ ..+.+.+...+ ++.+.+||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1111223345678899999999999999988887 44444333222 88899999999999
Q ss_pred hhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeEEEE
Q 003154 391 FKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQVKR 447 (843)
Q Consensus 391 ~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~~~~ 447 (843)
.+--|.-++.|.-.+... ...|.+.|=......-....-+..++++++.....
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~ 293 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALD 293 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhh
Confidence 999999999998877554 33455544322111223344455677777765433
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6e-08 Score=96.84 Aligned_cols=181 Identities=20% Similarity=0.192 Sum_probs=108.1
Q ss_pred CcccEEEcCCCCCC--CCchhccCCCCccEEEccCCCCc-ccchhHhhCCccCcEEeCCCC-cCccc--chhhhcccccc
Q 003154 540 KFLRVLDLGSLFLD--QYPAGIENLSRLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPSS-YIDHT--ADDIWKLNKLR 613 (843)
Q Consensus 540 ~~LrvL~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~-~l~~l--p~~i~~L~~L~ 613 (843)
..|+.|||+...++ ++..-+..+.+|+.|++.++.+. .+-..+ .+-.+|+.|||+.| .+++. .--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 36889999998877 55556678889999999998877 455565 88899999999998 66554 23366788888
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCccccCCC-CCCceEeeecCCcchhh-hhhHhhcCCCCCCeEEeec
Q 003154 614 HLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRL-PKLGSLQICGDLNYYQS-LLSKSLHGLSCLESLKLVN 691 (843)
Q Consensus 614 ~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~ 691 (843)
.|+++-+.+.... +...+.+. ++|..|+++++...... .+..-...+++|.+
T Consensus 264 ~LNlsWc~l~~~~---------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~----- 317 (419)
T KOG2120|consen 264 ELNLSWCFLFTEK---------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH----- 317 (419)
T ss_pred hcCchHhhccchh---------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee-----
Confidence 8886666654310 00001111 36777888774333222 22222234444444
Q ss_pred CCCCCCCceEeeccCCCCCCccEEEEecC-CCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 692 ESKMPRLSKIVLFENQFPPSLTHLSFSNT-DLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 692 ~~~~~~L~~L~l~~~~lp~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
|+|+.| .++......+-+++.|++|.++.|-.............|+|.+|++.+|-
T Consensus 318 -----------------------LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 -----------------------LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -----------------------eccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 444444 23333344455666666666664433222222334556777777777664
No 59
>PTZ00202 tuzin; Provisional
Probab=98.14 E-value=2.7e-05 Score=83.55 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=61.0
Q ss_pred CCCCCceecchHHHHHHHHHHHcCC-CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHH
Q 003154 171 KNRDNDIVGLDDKMEELLDHLIEGP-PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNI 249 (843)
Q Consensus 171 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 249 (843)
+.+...|+||+.+..++...|...+ ...+++.|.|++|+|||||++.+.... . + ..++.-.. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~--~--~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M--PAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C--c--eEEEECCC--CHHHHHHHH
Confidence 6677899999999999999997543 335689999999999999999999732 2 1 13322222 779999999
Q ss_pred HHHhCCC
Q 003154 250 IKFLMPS 256 (843)
Q Consensus 250 ~~~l~~~ 256 (843)
+.+|+.+
T Consensus 330 L~ALGV~ 336 (550)
T PTZ00202 330 VKALGVP 336 (550)
T ss_pred HHHcCCC
Confidence 9999973
No 60
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.10 E-value=7.4e-06 Score=84.27 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=42.3
Q ss_pred eecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC
Q 003154 177 IVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY 240 (843)
Q Consensus 177 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 240 (843)
|+||++++++|.+++..+. ...+.|+|..|+|||+|++++.+ ..+..-..++|+...+..
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccch
Confidence 6899999999999998754 67899999999999999999998 332221244555444443
No 61
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=6.5e-06 Score=88.35 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC--CChHHHHHHHHHHhCCCCC-Cccccccch-HHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL--YQPDSLLDNIIKFLMPSSK-LSEVMEDRD-YEMRKI 273 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~-~~~~~~~~~-~~~~~~ 273 (843)
-+.++|+|.+|+|||||++.+++.... ++|+..+||.+++. .++.+++++|...+-...- .+....... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~-- 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI-- 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH--
Confidence 467899999999999999999996333 37999999999866 7899999998554332211 000000000 1111
Q ss_pred HHHHHH-hCCCeEEEEEcCCCC
Q 003154 274 IHLHGY-LMSKRYLIVLDDVWT 294 (843)
Q Consensus 274 ~~l~~~-l~~kr~LlVlDdvw~ 294 (843)
+....+ -++++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 358999999999954
No 62
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=5.7e-06 Score=97.34 Aligned_cols=83 Identities=27% Similarity=0.398 Sum_probs=72.8
Q ss_pred cccEEEcCCCCCC-CCchhccCCCCccEEEccCCCCc-ccchhHhhCCccCcEEeCCCCcCc-ccchhhhcccccccccc
Q 003154 541 FLRVLDLGSLFLD-QYPAGIENLSRLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPSSYID-HTADDIWKLNKLRHLNF 617 (843)
Q Consensus 541 ~LrvL~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L 617 (843)
.++.|+|+++.+. .+|..+++|.+|++|+|++|.+. .+|..+ +.+++|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999886 88899999999999999999987 777777 99999999999999885 67888999999999998
Q ss_pred cccccCC
Q 003154 618 GLITLPA 624 (843)
Q Consensus 618 ~~~~l~~ 624 (843)
++|.+.+
T Consensus 498 s~N~l~g 504 (623)
T PLN03150 498 NGNSLSG 504 (623)
T ss_pred cCCcccc
Confidence 8888765
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=8.1e-07 Score=99.71 Aligned_cols=224 Identities=25% Similarity=0.272 Sum_probs=109.6
Q ss_pred hccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccc
Q 003154 536 CKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHL 615 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 615 (843)
+..++.|..|++.+|.+..+...+..+++|++|++++|.|+.+.. +..+..|+.|++.+|.+..+.. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 344455555555555555444334455555555555555554433 1444555555555554444422 3334555555
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccc-cCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDI-LGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESK 694 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 694 (843)
+++.|.+.. +... +..+.+|+.+.+.+ +..... ..+..+..+..+++..+.
T Consensus 168 ~l~~n~i~~-----------------------ie~~~~~~~~~l~~l~l~~--n~i~~i--~~~~~~~~l~~~~l~~n~- 219 (414)
T KOG0531|consen 168 DLSYNRIVD-----------------------IENDELSELISLEELDLGG--NSIREI--EGLDLLKKLVLLSLLDNK- 219 (414)
T ss_pred cCCcchhhh-----------------------hhhhhhhhccchHHHhccC--Cchhcc--cchHHHHHHHHhhccccc-
Confidence 544444332 0000 24556666666665 322111 111122222222333221
Q ss_pred CCCCceEeeccCCCCCC--ccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccc
Q 003154 695 MPRLSKIVLFENQFPPS--LTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWL 772 (843)
Q Consensus 695 ~~~L~~L~l~~~~lp~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l 772 (843)
...+. ....+ .. |+.+.++++.+.. .+..+..++.+..|++.++.+.... ....++.+..+....++..
T Consensus 220 i~~~~----~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLE----GLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceecc----Ccccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc---cccccchHHHhccCcchhc
Confidence 11111 11112 22 7788888887643 2255677888888888876665432 2234566666666665533
Q ss_pred ccc---cc-ccccccccceEeeecCCCCCCC
Q 003154 773 EEW---TM-GNEAMPKLECLVVNPCAYLKRL 799 (843)
Q Consensus 773 ~~l---~~-~~~~lp~L~~L~l~~c~~l~~l 799 (843)
..+ .. .....+.+..+.+..++.-...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred chhhhhccccccccccccccccccCcccccc
Confidence 222 11 1456788888888888755433
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.4e-06 Score=87.30 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=49.1
Q ss_pred cccEEEcCCCCCCCCc--hhcc-CCCCccEEEccCCCCccc--chhHhhCCccCcEEeCCCCcCcccchhh-hccccccc
Q 003154 541 FLRVLDLGSLFLDQYP--AGIE-NLSRLRYLKLNIPSLKSL--PSSLLSNLLNLYTLDMPSSYIDHTADDI-WKLNKLRH 614 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp--~~i~-~L~~Lr~L~L~~~~i~~l--p~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 614 (843)
.+..|.+.++.+...- ..|+ ...+++.|+|.+|.|+.- ...|+.+|+.|++|+|+.|.+...-..+ ..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4446677777665332 2232 456888888888887732 2234468888888888888654322211 24556777
Q ss_pred cccccccc
Q 003154 615 LNFGLITL 622 (843)
Q Consensus 615 L~L~~~~l 622 (843)
|-|.+..+
T Consensus 126 lVLNgT~L 133 (418)
T KOG2982|consen 126 LVLNGTGL 133 (418)
T ss_pred EEEcCCCC
Confidence 77544443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=4.4e-07 Score=89.64 Aligned_cols=249 Identities=18% Similarity=0.119 Sum_probs=153.9
Q ss_pred hccCCcccEEEcCCCCCC-----CCchhccCCCCccEEEccCCCCc----ccchhH------hhCCccCcEEeCCCCcCc
Q 003154 536 CKMFKFLRVLDLGSLFLD-----QYPAGIENLSRLRYLKLNIPSLK----SLPSSL------LSNLLNLYTLDMPSSYID 600 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i------~~~L~~L~~L~L~~~~l~ 600 (843)
+..+..+..+||+||.++ .+...|.+-.+|+..+++.-... ++|..+ +-+|++|++.+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345888999999999887 34556777789999999873222 333332 368999999999999653
Q ss_pred -ccch----hhhcccccccccccccccCCCCCCCC-CCccccccccccCCCCCCccccCCCCCCceEeeec--CCcchhh
Q 003154 601 -HTAD----DIWKLNKLRHLNFGLITLPAHPGKYC-SSLENLNFISALHPRCCTPDILGRLPKLGSLQICG--DLNYYQS 672 (843)
Q Consensus 601 -~lp~----~i~~L~~L~~L~L~~~~l~~~~~~~l-~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~--~~~~~~~ 672 (843)
..|. .|++-+.|.||.+++|.+......++ ..|+.|... .. ..+-|.|+...... ..|....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n---------KK-aa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN---------KK-AADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH---------hh-hccCCCceEEEeccchhccCcHH
Confidence 3343 36677899999999988765322111 122222211 11 34455666655543 1122233
Q ss_pred hhhHhhcCCCCCCeEEeecCC-CCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcc----cccCCCCCcEEEeecccc
Q 003154 673 LLSKSLHGLSCLESLKLVNES-KMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMP----TLEKLPYLQVLKLKQNSY 746 (843)
Q Consensus 673 ~l~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~ 746 (843)
.....+..-.+|+.+.+..|+ .+.....|-+ ..... .+|..|+|..|.++..... .+...+.|+.|.+..|-+
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 333445555678888887765 2233333322 11122 7888888888877643322 344567789999988776
Q ss_pred cCCccc-----cCCCCCCcccEEEecCccccccc-------ccccccccccceEeeecCCC
Q 003154 747 SGRKLA-----CGSDGFPKLKVLHLKSMIWLEEW-------TMGNEAMPKLECLVVNPCAY 795 (843)
Q Consensus 747 ~~~~~~-----~~~~~f~~L~~L~L~~~~~l~~l-------~~~~~~lp~L~~L~l~~c~~ 795 (843)
+..... +.-..+|+|..|.+.++..-... .+..+++|-|..|.+.+|..
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 654322 12234889999988887532221 23457899999999999984
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.99 E-value=6e-05 Score=87.18 Aligned_cols=117 Identities=10% Similarity=0.058 Sum_probs=78.8
Q ss_pred CCceecchHHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhcCccc---cccCC--eeEEEEeCCCCChHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYNSNYV---KHYFD--CKAWVPVSILYQPDSL 245 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~~~ 245 (843)
+..++|||+++++|...|... .....++-|+|.+|.|||+.++.|.+..+- +...+ .+++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 457899999999999988752 233467889999999999999999874211 11222 2566766666778889
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhC---CCeEEEEEcCCCCc
Q 003154 246 LDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM---SKRYLIVLDDVWTN 295 (843)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~ 295 (843)
...|.+++....+ .......+.. ..+...+. +...+||||+|...
T Consensus 834 YqvI~qqL~g~~P---~~GlsS~evL--erLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKP---PNALNSFKIL--DRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCC---CccccHHHHH--HHHHhhhhcccccceEEEeehHhhh
Confidence 9999999965332 1222233344 45555542 22358999999643
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1e-05 Score=58.40 Aligned_cols=38 Identities=37% Similarity=0.485 Sum_probs=20.9
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCccc
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT 602 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l 602 (843)
+|++|++++|.|+.+|+.+ ++|++|++|++++|.+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence 4555666666666555554 5666666666666655544
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.1e-05 Score=58.27 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=36.2
Q ss_pred CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccch
Q 003154 540 KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPS 580 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 580 (843)
++|++|++++|.+..+|..+++|++|++|++++|.|+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999889999999999999999998764
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2.6e-06 Score=95.67 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=65.3
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
+.++..|.+.++.... ....+..+.+|++|+|++|.|.++. .+..+..|+.|++++|.|..++. +..+.+|+
T Consensus 94 ~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG--LESLKSLK 165 (414)
T ss_pred ccceeeeeccccchhh-----cccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC--Cccchhhh
Confidence 5566666666655532 1111556777777777777776554 45666667777777777776654 24577777
Q ss_pred EEeCCCCcCcccchh-hhcccccccccccccccC
Q 003154 591 TLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLP 623 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~ 623 (843)
.+++++|.+..+... +..+.+|+.+.+++|.+.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 777777766666543 466677777775555543
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00012 Score=79.49 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=85.7
Q ss_pred ceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccCC-e-eEEEEeCCCCChHHHHHHHHH
Q 003154 176 DIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD-C-KAWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~-~~wv~~s~~~~~~~~~~~i~~ 251 (843)
.+.+||++++++...|... +....-+.|+|.+|.|||+.++.|.. +++.... . +++|.+-...+..+++.+|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 4999999999999988753 22233388999999999999999999 5555432 2 788888888999999999999
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCc
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTN 295 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~ 295 (843)
+++.... ......+.- ..+.+.+. ++.++||||++...
T Consensus 96 ~~~~~p~----~g~~~~~~~--~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 96 KLGKVPL----TGDSSLEIL--KRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HcCCCCC----CCCchHHHH--HHHHHHHHhcCCeEEEEEcchhhh
Confidence 9974221 234445555 67777774 58899999999754
No 71
>PLN03150 hypothetical protein; Provisional
Probab=97.89 E-value=1.7e-05 Score=93.44 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccc-cccceE
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAM-PKLECL 788 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~l-p~L~~L 788 (843)
++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.. +.....+++|+.|+|++|.....+|..++.+ .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 55666666666555555555566666666666655555432 2233445566666666555333444443332 344555
Q ss_pred eeecCCCCCCC
Q 003154 789 VVNPCAYLKRL 799 (843)
Q Consensus 789 ~l~~c~~l~~l 799 (843)
.+.+|+.+...
T Consensus 521 ~~~~N~~lc~~ 531 (623)
T PLN03150 521 NFTDNAGLCGI 531 (623)
T ss_pred EecCCccccCC
Confidence 55555544433
No 72
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00016 Score=77.82 Aligned_cols=125 Identities=17% Similarity=0.275 Sum_probs=82.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC----ccccccCCeeEEEEe-CCCCChHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS----NYVKHYFDCKAWVPV-SILYQPDSLLDNI 249 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~----~~~~~~F~~~~wv~~-s~~~~~~~~~~~i 249 (843)
.+++|-+..++.+.+++..+. -....-++|..|+||||+|+.++.. .....|+|...|... +....+.+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 367898999999999987653 3457789999999999999988873 123456777666552 33333333 2223
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEc-CCCCchhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLD-DVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD-dvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
.+.+... -...++|+.||-| |..+...++.+...+.....++.+|++|.+.+
T Consensus 82 ~~~~~~~---------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 82 IEEVNKK---------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHhcC---------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 3332211 0112455555544 45566789999999988778899999887654
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.84 E-value=7.1e-05 Score=83.78 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=63.6
Q ss_pred CceecchHHHHH---HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHH
Q 003154 175 NDIVGLDDKMEE---LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 175 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 251 (843)
.++||.+..+.. +.+++..+. ...+.++|.+|+||||||+.+++. .... |+.++....-.+-.+++++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH
Confidence 357888777655 777776544 567888999999999999999983 3333 2333322111111122222
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHH-HhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEE
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHG-YLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLT 316 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iii 316 (843)
. ... ...+++.+|++|+++.. .+.+.+...+.. |..++|
T Consensus 83 ~-----------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 83 E-----------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred H-----------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 1 111 12467889999999865 355556555443 455555
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=6.5e-05 Score=81.27 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=49.0
Q ss_pred hccCCcccEEEcCCCCCCCCchhccCCCCccEEEccC-CCCcccchhHhhCCccCcEEeCCCC-cCcccchh
Q 003154 536 CKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNI-PSLKSLPSSLLSNLLNLYTLDMPSS-YIDHTADD 605 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~ 605 (843)
+..++.++.|++++|.+..+|. + -.+|+.|.+++ +.++.+|..+ ..+|+.|++++| .+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc
Confidence 4457889999999998888882 2 23699999987 4566777655 368999999998 88888865
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=3.8e-06 Score=88.24 Aligned_cols=255 Identities=20% Similarity=0.154 Sum_probs=150.8
Q ss_pred CcccEEEcCCCCC---CCCchhccCCCCccEEEccCCC-Cc-ccchhHhhCCccCcEEeCCCC-cCcccc-h-hhhcccc
Q 003154 540 KFLRVLDLGSLFL---DQYPAGIENLSRLRYLKLNIPS-LK-SLPSSLLSNLLNLYTLDMPSS-YIDHTA-D-DIWKLNK 611 (843)
Q Consensus 540 ~~LrvL~L~~~~~---~~lp~~i~~L~~Lr~L~L~~~~-i~-~lp~~i~~~L~~L~~L~L~~~-~l~~lp-~-~i~~L~~ 611 (843)
..|+.|.+.|+.- ..+-..-.+++++..|++.++. ++ ..-.++-..+.+|++|++-.| .++... . -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3678888888752 2333445567777777777754 22 111222256788888888887 565442 2 2346778
Q ss_pred cccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeec
Q 003154 612 LRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVN 691 (843)
Q Consensus 612 L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 691 (843)
|.+|+++.+.--. ...+......+.+++++...+|.....+.+-..-..+.-+..+++.
T Consensus 218 L~~lNlSwc~qi~--------------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~- 276 (483)
T KOG4341|consen 218 LKYLNLSWCPQIS--------------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ- 276 (483)
T ss_pred HHHhhhccCchhh--------------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchh-
Confidence 8888854432110 0011111334445555555553332223322222233334444443
Q ss_pred CCCCCCCceEeecc--CCCCCCccEEEEecCCC-CCCCccccc-CCCCCcEEEeeccc-ccCCccccCCCCCCcccEEEe
Q 003154 692 ESKMPRLSKIVLFE--NQFPPSLTHLSFSNTDL-IDDPMPTLE-KLPYLQVLKLKQNS-YSGRKLACGSDGFPKLKVLHL 766 (843)
Q Consensus 692 ~~~~~~L~~L~l~~--~~lp~~L~~L~L~~~~l-~~~~~~~l~-~l~~L~~L~L~~~~-~~~~~~~~~~~~f~~L~~L~L 766 (843)
.|..+..-.+|. ... ..|+.|..++|.. .......|+ +.++|+.|.+..|. |+...+.....+.+.|+.+++
T Consensus 277 --~c~~lTD~~~~~i~~~c-~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 277 --HCNQLTDEDLWLIACGC-HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred --hhccccchHHHHHhhhh-hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 223333333332 123 6788899988853 333344455 68999999999875 555556666677899999999
Q ss_pred cCccccccc--ccccccccccceEeeecCCCCCCC-----CccccCCCCCcEEEecCCC
Q 003154 767 KSMIWLEEW--TMGNEAMPKLECLVVNPCAYLKRL-----PEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 767 ~~~~~l~~l--~~~~~~lp~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~ 818 (843)
.+|.....- .....++|.|+.|.++.|...+.. ..+-.+...|+.+.+++||
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 988755432 223457999999999999876643 2333456679999999999
No 76
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.76 E-value=0.0001 Score=80.74 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=73.8
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHh
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
..++++.+...+.+...|..+ +.|.++|++|+|||++|+.+++......+|+.+.||++++.++..+++..+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~---- 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY---- 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----
Confidence 345888999999999999864 467789999999999999999854445578899999999999877765422
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCc
Q 003154 254 MPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTN 295 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~ 295 (843)
..... ... ....-.. +.+.+.-+ ++++.+|+|++...
T Consensus 246 rP~~v--gy~-~~~G~f~--~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 246 RPNGV--GFR-RKDGIFY--NFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCCC--CeE-ecCchHH--HHHHHHHhcccCCcEEEEehhhcc
Confidence 11100 000 0011112 22222222 46899999999654
No 77
>PRK06893 DNA replication initiation factor; Validated
Probab=97.74 E-value=6.4e-05 Score=76.88 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
.+.+.++|.+|+|||+|++.+++. .......+.|++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 457899999999999999999984 43334456677653
No 78
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.68 E-value=0.00022 Score=74.58 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=82.7
Q ss_pred CCceecchHHHHHHHHHHHcCCCC-ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQ-LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
++.+.+|+.....+..++.+.+.. +..|-|+|..|.|||.+++++++.. . -..+|+++-..|+...++.+|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHH
Confidence 567889999999999999877653 4556899999999999999999853 2 236899999999999999999999
Q ss_pred hCC-CCCCccccc--cchHHHHHHHHHHH--HhC--CCeEEEEEcCCCCch
Q 003154 253 LMP-SSKLSEVME--DRDYEMRKIIHLHG--YLM--SKRYLIVLDDVWTND 296 (843)
Q Consensus 253 l~~-~~~~~~~~~--~~~~~~~~~~~l~~--~l~--~kr~LlVlDdvw~~~ 296 (843)
.+. +.+....+. .+..... ..+.+ ..+ ++.++||||++....
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i--~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFI--YLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHH--HHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 963 222111111 1112222 23333 122 468999999997653
No 79
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.66 E-value=0.00017 Score=84.39 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=87.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC---CeeEEEEeCC---CCChHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF---DCKAWVPVSI---LYQPDSLLDN 248 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~---~~~~~~~~~~ 248 (843)
++++|++..+..+.+.+.... ...+.|+|.+|+||||||+.+++.......+ ...-|+.+.. ..+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999999988875443 5679999999999999999998854333333 1244555432 1222222211
Q ss_pred H---------------HHHhCCCCCC--------------ccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hh
Q 003154 249 I---------------IKFLMPSSKL--------------SEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DV 297 (843)
Q Consensus 249 i---------------~~~l~~~~~~--------------~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~ 297 (843)
+ +...+..... .+....+ ...+ ..+.+.++++++.++-|+.|.. ..
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q--~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQ--NKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHH--HHHHHHHhhCeEEeecceeccCCccc
Confidence 1 1111110000 0011122 2346 8899999999999998877755 46
Q ss_pred hHHHHHhcCCCCCCcEEEE--Eecch
Q 003154 298 WEFIQEILPDNLNGSRVLT--TVSNI 321 (843)
Q Consensus 298 ~~~l~~~~~~~~~gs~iii--TtR~~ 321 (843)
|+.+...+....+..-|+| ||++.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccc
Confidence 8888777766665555555 55644
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.66 E-value=0.00021 Score=78.09 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=38.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|++..++.+.+++..+. .+.+-++|.+|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999887654 456789999999999999999873
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00024 Score=76.97 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=43.8
Q ss_pred ccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCC-cCcccchhhhccccccccccccc
Q 003154 559 IENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSS-YIDHTADDIWKLNKLRHLNFGLI 620 (843)
Q Consensus 559 i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~ 620 (843)
+..+.++++|++++|.++.+| .+ ..+|++|.+++| .+..+|..+. ++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-VL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-CC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 445789999999999999998 22 457999999998 7888887553 57888885554
No 82
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=3.6e-05 Score=90.30 Aligned_cols=129 Identities=20% Similarity=0.235 Sum_probs=90.9
Q ss_pred cceEEEEEeeCCCC-C-cccccc---ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCC
Q 003154 490 KRVRRFCANVNLGE-L-DSFDRL---DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSR 564 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~-~-~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~ 564 (843)
.+.+||.+. +... . ..+..+ +|.||+|.+.+.... .......+.+|++|+.||++++++..+ ..|++|++
T Consensus 122 ~nL~~LdI~-G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDIS-GSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCcc-ccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 346666665 3221 1 122233 899999999887664 233557789999999999999999887 78999999
Q ss_pred ccEEEccCCCCcccc--hhHhhCCccCcEEeCCCCcCcccchh-------hhcccccccccccccccCC
Q 003154 565 LRYLKLNIPSLKSLP--SSLLSNLLNLYTLDMPSSYIDHTADD-------IWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 565 Lr~L~L~~~~i~~lp--~~i~~~L~~L~~L~L~~~~l~~lp~~-------i~~L~~L~~L~L~~~~l~~ 624 (843)
|+.|.+++-.+..-. ..+ -+|++|++||+|......-+.. -..||+||.||.++..+..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999999886666322 344 6899999999998844333321 1248999999966555443
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.60 E-value=0.00016 Score=74.08 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 180 LDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 180 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
.+..++++.+++... ....+.|+|.+|+||||||+.+++. ........++++++
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 455677777776533 3678899999999999999999983 33333345555543
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00044 Score=79.87 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=76.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.......++ +..+......+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 478999999999999987654 234556999999999999998877321111111 111221122222211100
Q ss_pred CCCCCccc---cccchHHHHHHHHHHHH----hCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 255 PSSKLSEV---MEDRDYEMRKIIHLHGY----LMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 255 ~~~~~~~~---~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
.+.-++ .....+++. +.+... ..++.-++|||++... ..|+.+...+.......++|+||++.+
T Consensus 88 --~DviEIDAas~rgVDdIR--eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 88 --VDYVEMDAASNRGVDEMA--ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred --ceEEEecccccccHHHHH--HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 000000 011122332 222221 1245568889999865 458888777766556788888877754
No 85
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00037 Score=73.73 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHH
Q 003154 171 KNRDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 171 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 250 (843)
.+....++|-+..+.+. +..+ .+.-.-.||.+|+||||||+.+.. .....| ..+|-..+-.+=+++++
T Consensus 26 ~vGQ~HLlg~~~~lrr~---v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 26 VVGQEHLLGEGKPLRRA---VEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREII 93 (436)
T ss_pred hcChHhhhCCCchHHHH---HhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHH
Confidence 33444555555444443 3333 377777899999999999999998 444444 33443333222223333
Q ss_pred HHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEE--ecch
Q 003154 251 KFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTT--VSNI 321 (843)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiT--tR~~ 321 (843)
+.. -.....++|.+|++|.|..- .+-+.+ +|.-.+|.-|+|- |-++
T Consensus 94 e~a----------------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENP 143 (436)
T COG2256 94 EEA----------------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENP 143 (436)
T ss_pred HHH----------------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCC
Confidence 321 12233489999999999643 344444 3444457777764 4444
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.53 E-value=0.00035 Score=82.50 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=37.0
Q ss_pred CceecchHHHH---HHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 175 NDIVGLDDKME---ELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 175 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
.+++|.+..+. .+.+.+..+. ...+.++|.+|+||||||+.+++ ....+|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 46889888774 4555555443 56678999999999999999998 344444
No 87
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=6.7e-05 Score=88.14 Aligned_cols=107 Identities=24% Similarity=0.252 Sum_probs=83.9
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC--CCchhccCCCCccEEEccCCCCcccchhHhhCCcc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD--QYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLN 588 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 588 (843)
..+|++|.+.|.... ...++...-..+|+|+.|.+.|-.+. ++..-..++++|+.||+|+++++.+ ..+ ++|+|
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 578899999885553 35577788888999999999997654 4445556888999999999999988 666 99999
Q ss_pred CcEEeCCCCcCccc--chhhhcccccccccccccc
Q 003154 589 LYTLDMPSSYIDHT--ADDIWKLNKLRHLNFGLIT 621 (843)
Q Consensus 589 L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~ 621 (843)
||+|.+++-.++.- -..+.+|++|++||+|...
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 99999988777653 3467889999999955543
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=97.50 E-value=0.00043 Score=79.18 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=71.4
Q ss_pred CceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.+++|.+..++++.+|+..- +...+.+-|+|.+|+||||+|+.++++ .. |+. +-+..+...+.. ....++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~-ielnasd~r~~~-~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEV-IELNASDQRTAD-VIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCE-EEEcccccccHH-HHHHHHHH
Confidence 46999999999999998753 223678999999999999999999984 22 332 223444332222 22222222
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCch------hhHHHHHhcCCCCCCcEEEEEecc
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTND------VWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
..... .....++-+||+|+++... .+..+...+.. .+..||+|+.+
T Consensus 88 ~~~~~--------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 88 AATSG--------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred hhccC--------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 21100 0111367899999997642 35555555442 23456766643
No 89
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=4.1e-05 Score=68.34 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=55.2
Q ss_pred chHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhh
Q 003154 531 DSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDI 606 (843)
Q Consensus 531 ~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i 606 (843)
+++.+-.+++.++.|+|++|.+..+|..+..++.||.|+++.|.+...|.-+ ..|.+|-.||..++.+..+|-.+
T Consensus 68 fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHhcCCCCccccCcHHH
Confidence 4556666677777777777777777777777777777777777777777776 55777777777777777776653
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=97.47 E-value=0.00075 Score=72.90 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-cccCCe-eEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYV-KHYFDC-KAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~-~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.+++|.++.++.|.+++..+. .+-+-++|.+|+||||+|+.+++. . ...|.. ++-+..+...+.. ..+++++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHE--LLGPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HhcccCccceeeecccccccHH-HHHHHHHH
Confidence 467898888888888877554 445678999999999999999873 2 222321 1112222222221 12222221
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
+..... ..-.++.-++|+|++... ...+.+...+......+++|+++..
T Consensus 88 ~~~~~~-------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 88 FAQKKV-------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHhccc-------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 110000 000245678999999765 3444455444443456778777654
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.47 E-value=0.00069 Score=70.21 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHH
Q 003154 172 NRDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 251 (843)
+....+||-+.-+. +.+.. +.+.-+..||.+|+||||||+.+.+..+-.. ..||..|-.-.-..-.++|++
T Consensus 141 vGQ~hlv~q~gllr---s~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 141 VGQSHLVGQDGLLR---SLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred cchhhhcCcchHHH---HHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 33444555544333 33333 3488889999999999999999998533333 567887766554455556665
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEE--Eecchh
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLT--TVSNIE 322 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iii--TtR~~~ 322 (843)
+... ...+.++|-.|.+|.|..- .+-+ ..+|...+|+-++| ||.++.
T Consensus 212 ~aq~---------------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 212 QAQN---------------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred HHHH---------------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCc
Confidence 4321 1234478899999999532 2222 23555566776666 455543
No 92
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.47 E-value=0.00088 Score=72.59 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=38.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|+++.++.+.+++..+. .+.+.++|.+|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999997654 455799999999999999999884
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0016 Score=71.58 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=74.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+.-....... ..++.....-+++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 478999999999999887653 345678999999999999999987321111110 011111111111111110
Q ss_pred CCCC-CccccccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCCch--hhHHHHHhcCCCCCCcEEEEEecch
Q 003154 255 PSSK-LSEVMEDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWTND--VWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 255 ~~~~-~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~--~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
..-. .........++. +.+.+.+ .+++-++|+|++.... .++.+...+.......++|++|.+.
T Consensus 88 ~d~~~~~~~~~~~v~~i---r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM---REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred CceEEecccccCCHHHH---HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 0000 000000111222 2222222 2456689999997653 5777777776655667777776543
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.46 E-value=0.00019 Score=78.99 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++.|+++.+++|.+.+... -...+-+.++|.+|+|||++|+.+++.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999887532 123456889999999999999999983
No 95
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.0007 Score=63.03 Aligned_cols=89 Identities=8% Similarity=-0.062 Sum_probs=49.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHG 278 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (843)
..+.|+|.+|+||||+|+.+... .......++++..+........... ....... .......... ..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~--~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGK----KASGSGELRL--RLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhcc----CCCCCHHHHH--HHHHH
Confidence 57899999999999999999984 3333334566655544333322221 1111100 0111122222 44444
Q ss_pred HhCCCe-EEEEEcCCCCchh
Q 003154 279 YLMSKR-YLIVLDDVWTNDV 297 (843)
Q Consensus 279 ~l~~kr-~LlVlDdvw~~~~ 297 (843)
..+..+ .+|++|++.....
T Consensus 73 ~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 73 LARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHhcCCCEEEEECCcccCC
Confidence 444444 9999999987643
No 96
>PRK08116 hypothetical protein; Validated
Probab=97.45 E-value=0.00081 Score=70.29 Aligned_cols=102 Identities=23% Similarity=0.225 Sum_probs=59.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHG 278 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (843)
.-+.++|.+|+|||+||..+++. +..+-..+++++ ..+++..|......... .+. ..+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~------~~~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSGK------EDE------NEIIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcccc------ccH------HHHHH
Confidence 45889999999999999999994 443333456654 44555555555432111 111 23344
Q ss_pred HhCCCeEEEEEcCCCC--chhhHH--HHHhcCC-CCCCcEEEEEecch
Q 003154 279 YLMSKRYLIVLDDVWT--NDVWEF--IQEILPD-NLNGSRVLTTVSNI 321 (843)
Q Consensus 279 ~l~~kr~LlVlDdvw~--~~~~~~--l~~~~~~-~~~gs~iiiTtR~~ 321 (843)
.+.+-. ||||||+.. ..+|.. +...+.. -..|..+||||...
T Consensus 175 ~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 175 SLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 455444 899999943 344532 3332221 13456799998743
No 97
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.45 E-value=0.00097 Score=72.13 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHh
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
-.+++|.++..+.+.+++..+. -..++-++|.+|+||||+|+.+++. .... ...+..+. .... ..++.+...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~-~i~~~l~~~ 91 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRID-FVRNRLTRF 91 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHH-HHHHHHHHH
Confidence 3578999999999999998643 3567777999999999999999883 2221 23333333 1111 111111111
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 254 MPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
. ... .+.+.+-+||+||+... +..+.+...+.....++++|+||....
T Consensus 92 ~-------------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 92 A-------------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred H-------------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 0 000 01134557889999754 223344443444455788999987543
No 98
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0012 Score=75.47 Aligned_cols=135 Identities=15% Similarity=0.104 Sum_probs=75.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||.+...+.|.+++..+. -...+-++|..|+||||+|+.+.+...... |+. ...++....-+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~-~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVT-STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCC-CCCCccCHHHHHHhcCCC
Confidence 478999999999999998654 246778999999999999999877311111 111 111111111111111000
Q ss_pred CCCCCcccc---ccchHHHHHHHHHHH----HhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 255 PSSKLSEVM---EDRDYEMRKIIHLHG----YLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 255 ~~~~~~~~~---~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
. +.-.+. ....+++. +.+.. -..+++-++|+|+|... ...+.+...+.....+.++|++|.+.
T Consensus 87 p--DviEIDAAs~~~VddIR--eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 87 I--DLIEIDAASRTKVEDTR--ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred C--ceEEecccccCCHHHHH--HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 0 000000 11122222 11111 12356678999999765 46677777766555567888877653
No 99
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0013 Score=74.95 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=37.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|-+..++.+.+.+..+. -...+-++|..|+||||+|+.+++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887653 245577899999999999999986
No 100
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0011 Score=78.19 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=38.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||-+..++.|.+++..+. =...+-++|..|+||||+|+.+++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999987653 2344579999999999999999874
No 101
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=7.9e-05 Score=72.00 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccc-ccCCeeEE
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVK-HYFDCKAW 233 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~w 233 (843)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999964444 56787776
No 102
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00026 Score=80.50 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=75.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.+++|-+..++.|.+++..+. -...+.++|.+|+||||+|+.+++.....+.++..+|.|.+- +.+....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~- 83 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGA- 83 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCC-
Confidence 468999999999998887754 235668999999999999999988432223333344443221 0010000
Q ss_pred CCCCCccc---cccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 255 PSSKLSEV---MEDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 255 ~~~~~~~~---~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
..+.-.+ .....+.+. .+.+.+ .+++-++|+|+++.. +.++.+...+........+|++|..
T Consensus 84 -h~dv~el~~~~~~~vd~iR---~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 84 -HPDVLEIDAASNNSVEDVR---DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred -CCceEEecccccCCHHHHH---HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 0000000 011122222 222222 246678999999855 4677787777665555666665543
No 103
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.002 Score=73.69 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=76.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-...+. +..--+ .++.+.....-+.|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcCCC
Confidence 478999999999999998654 2345688999999999999998763111000 000000 0011111111111111000
Q ss_pred CCCCCccc---cccchHHHHHHHHHHHH----hCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc-hhhh
Q 003154 255 PSSKLSEV---MEDRDYEMRKIIHLHGY----LMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN-IEIL 324 (843)
Q Consensus 255 ~~~~~~~~---~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~ 324 (843)
.+.-.+ .....+++. +.+... ..++.-++|+|++... ..++.|...+..-..+.++|++|.+ ..+.
T Consensus 93 --pDviEIdAas~~gVDdIR--eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 93 --VDYIEMDAASNRGVDEMA--QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred --CcceEecccccCCHHHHH--HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 000000 011223333 222221 2356678999999765 5777777777654556666555554 4444
Q ss_pred h
Q 003154 325 T 325 (843)
Q Consensus 325 ~ 325 (843)
.
T Consensus 169 p 169 (700)
T PRK12323 169 V 169 (700)
T ss_pred h
Confidence 3
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=6.2e-06 Score=91.99 Aligned_cols=109 Identities=26% Similarity=0.236 Sum_probs=72.2
Q ss_pred cccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcc
Q 003154 650 DILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMP 728 (843)
Q Consensus 650 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~ 728 (843)
+++.-++.|+.|+++. |..... ..+..+++|++|+|+.|. |+.+.- .... ..|+.|.|++|.++. ..
T Consensus 181 ~SLqll~ale~LnLsh--Nk~~~v--~~Lr~l~~LkhLDlsyN~----L~~vp~l~~~g--c~L~~L~lrnN~l~t--L~ 248 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSH--NKFTKV--DNLRRLPKLKHLDLSYNC----LRHVPQLSMVG--CKLQLLNLRNNALTT--LR 248 (1096)
T ss_pred HHHHHHHHhhhhccch--hhhhhh--HHHHhcccccccccccch----hccccccchhh--hhheeeeecccHHHh--hh
Confidence 3466778888888886 554432 367788889999988654 332220 1111 458888888887643 44
Q ss_pred cccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 729 TLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 729 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
.+.+|.+|+.|++++|.+.+-.-......+..|+.|.|.+|+
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 567889999999998887653222223346677888888776
No 105
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=8.4e-05 Score=66.41 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=45.4
Q ss_pred ccCCcccEEEcCCCCCCCCchhccCC-CCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccc
Q 003154 537 KMFKFLRVLDLGSLFLDQYPAGIENL-SRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHL 615 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~~lp~~i~~L-~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 615 (843)
.+...|...+|++|.+.++|+.+... +.+..|++++|.|..+|.++ ..++.|+.|+++.|.+...|..+..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34445555566666665555555432 35555666666666666664 55666666666666665555555555555555
Q ss_pred cc
Q 003154 616 NF 617 (843)
Q Consensus 616 ~L 617 (843)
+.
T Consensus 129 ds 130 (177)
T KOG4579|consen 129 DS 130 (177)
T ss_pred cC
Confidence 53
No 106
>PRK08727 hypothetical protein; Validated
Probab=97.28 E-value=0.00094 Score=68.45 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV 236 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (843)
...+.|+|..|+|||+|++.+++ ...+....+.|+++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 35699999999999999999988 34444445667653
No 107
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0024 Score=72.08 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=37.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||.+...+.+.+.+..+. -...+-++|.+|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999988888888777654 2356789999999999999999774
No 108
>PRK10536 hypothetical protein; Provisional
Probab=97.20 E-value=0.0037 Score=63.55 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEE
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAW 233 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~w 233 (843)
+...+.++......++.+|... .+|.+.|.+|.|||+||..+..+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3456778999999999988653 48999999999999999998874222344554443
No 109
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.17 E-value=0.003 Score=76.61 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=139.7
Q ss_pred ceecchHHHHHHHHHHHcC-CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC---CCC---ChHHHHHH
Q 003154 176 DIVGLDDKMEELLDHLIEG-PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS---ILY---QPDSLLDN 248 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~~---~~~~~~~~ 248 (843)
.++||+.+.+.|...+... ...-.|+.|.|..|||||+|+++|.. .+.+.+...+--..+ ... ......++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999988764 33467999999999999999999998 444332221111111 111 12234444
Q ss_pred HHHHhCC-------------------CCCC-----cc-------------ccccchHH-----HHHHHHHHHHhC-CCeE
Q 003154 249 IIKFLMP-------------------SSKL-----SE-------------VMEDRDYE-----MRKIIHLHGYLM-SKRY 285 (843)
Q Consensus 249 i~~~l~~-------------------~~~~-----~~-------------~~~~~~~~-----~~~~~~l~~~l~-~kr~ 285 (843)
++.++.. .... |. +....... .. ..+..+.. .|+.
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~--~~i~~~~~~~~pl 156 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFL--RFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHH--HHHHHHHhccCCe
Confidence 4444411 1100 00 00011111 12 33333343 4689
Q ss_pred EEEEcCC-CCc-hhhHHHHHhcCCCCC----CcEEEEEecchhhhh------------cccc----------CCCCcC-C
Q 003154 286 LIVLDDV-WTN-DVWEFIQEILPDNLN----GSRVLTTVSNIEILT------------SFQL----------ENGQHI-R 336 (843)
Q Consensus 286 LlVlDdv-w~~-~~~~~l~~~~~~~~~----gs~iiiTtR~~~v~~------------~~~~----------~~~~~~-~ 336 (843)
.+|+||+ |-. ...+-+......... -..|..+........ +..| ...-.+ .
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 9999999 433 233333222221110 012222222111111 0133 111122 3
Q ss_pred cccccccchhhhhcCCchhHHHHHhhhhHHH-HH------Hhhhccc---------cc---chhhccCCCchhhhhHHhh
Q 003154 337 LDLVPAGGPLRVTYEGWPFLILYHGSLSLEE-NR------EKILAEP---------FG---DQVLTYSKFPLYFKLCGLY 397 (843)
Q Consensus 337 ~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~------~~~~~~~---------~~---~l~~sy~~L~~~~k~cfl~ 397 (843)
....+..+.|+++.+|.|+-+.-+=..+.++ +. ..|.+++ .+ .+..--+.||...++..-.
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4456778999999999999998887777732 10 1111121 22 3667788999999999999
Q ss_pred hccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeE
Q 003154 398 LSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQ 444 (843)
Q Consensus 398 ~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~ 444 (843)
.|++-.. |+.+.|...|-.. ....+...++.|....++-
T Consensus 317 AA~iG~~--F~l~~La~l~~~~------~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 317 AACIGNR--FDLDTLAALAEDS------PALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHhCcc--CCHHHHHHHHhhc------hHHHHHHHHHHhHhhceec
Confidence 9998754 4556666655431 3456666666666555554
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.16 E-value=0.00073 Score=62.39 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 003154 201 VAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~ 221 (843)
|-|+|.+|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999994
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0034 Score=72.62 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=38.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 479999999999999988653 2456789999999999999988773
No 112
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0038 Score=70.76 Aligned_cols=141 Identities=11% Similarity=0.062 Sum_probs=75.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCe-eEEEEeCCCCChHHHHHHHHHHh
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDC-KAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
.+++|-+..+..+.+.+..+. -...+-++|..|+||||+|+.+++.-.....+.. ..+. .+....-...|....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCC
Confidence 468999999998888776653 2456788999999999999999874211111100 0000 011111111111100
Q ss_pred CCCCCCccc---cccchHHHHHHHHHHHH----hCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEE-ecchhh
Q 003154 254 MPSSKLSEV---MEDRDYEMRKIIHLHGY----LMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTT-VSNIEI 323 (843)
Q Consensus 254 ~~~~~~~~~---~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiT-tR~~~v 323 (843)
.. +.-.+ .....+++. ..+... ..+++-++|+|+++.. ..|+.+...+....+.+.+|++ |+...+
T Consensus 96 h~--Dv~eidaas~~~vd~Ir--~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 96 HP--DIIEIDAASKTSVDDIR--RIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred CC--cEEEeeccCCCCHHHHH--HHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 00 00000 111223332 222111 2356778999999875 5688888777765556676654 444444
Q ss_pred h
Q 003154 324 L 324 (843)
Q Consensus 324 ~ 324 (843)
.
T Consensus 172 ~ 172 (507)
T PRK06645 172 P 172 (507)
T ss_pred h
Confidence 3
No 113
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.15 E-value=0.00051 Score=69.41 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV 236 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (843)
.-.++|+|..|.|||||+..+.. .....|+++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34688999999999999999987 57788988887764
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0032 Score=71.81 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=73.0
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.--....++ ..+++....-+.|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCCC
Confidence 468999999999999997654 234578899999999999998887321111111 011111111111111000
Q ss_pred CCCCCccc---cccchHHHHHHHHHHHH-----hCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 255 PSSKLSEV---MEDRDYEMRKIIHLHGY-----LMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 255 ~~~~~~~~---~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
. +.-.+ .....++.. + +.+. ..++.-++|+|+|... +..+.+...+......+++|++|.+
T Consensus 88 ~--d~~eidaas~~~v~~iR--~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 88 P--DLFEVDAASRTKVEDTR--E-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred c--eEEEEcccccCCHHHHH--H-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 0 00000 011122222 1 1111 1356678999999764 5667777776655556777776654
No 115
>CHL00181 cbbX CbbX; Provisional
Probab=97.11 E-value=0.0033 Score=66.38 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=33.6
Q ss_pred CceecchHHHHHHHHHHH---c-------C---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLI---E-------G---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..+++|.++.. - + ......+.++|.+|+||||+|+.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468998888887765532 1 1 11233478899999999999999977
No 116
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0035 Score=72.76 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=75.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+.-.....+ .+..+.....-+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 578999999999999887654 23456789999999999999998742111100 0112222222222221100
Q ss_pred CCCCCcccc---ccchHHHHHH-HHHHH-HhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc-hhhh
Q 003154 255 PSSKLSEVM---EDRDYEMRKI-IHLHG-YLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN-IEIL 324 (843)
Q Consensus 255 ~~~~~~~~~---~~~~~~~~~~-~~l~~-~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~ 324 (843)
. +.-.++ ....+++... +.+.. -..+++-++|+|++... +..+.+...+.......++|++|.+ ..+.
T Consensus 88 ~--D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 88 V--DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred C--CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 0 000000 0112222200 11111 12467779999999754 5677777766655556666665555 4443
No 117
>PRK08181 transposase; Validated
Probab=97.10 E-value=0.001 Score=69.13 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=54.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHG 278 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (843)
.-+.++|.+|+|||.||..+.+ ........+.|++ ..++...+...... .+. ..+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~---------~~~------~~~l~ 163 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARRE---------LQL------ESAIA 163 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhC---------CcH------HHHHH
Confidence 3489999999999999999988 3433333456654 34555555433211 011 11222
Q ss_pred HhCCCeEEEEEcCCCCc---hhhH-HHHHhcCCCCCCcEEEEEecch
Q 003154 279 YLMSKRYLIVLDDVWTN---DVWE-FIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 279 ~l~~kr~LlVlDdvw~~---~~~~-~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
.+. +-=|||+||+... +.+. .+...+...-.+..+||||...
T Consensus 164 ~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 164 KLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 222 3349999999643 2222 2333332211123588888754
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0033 Score=70.02 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=77.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEE-eCCCCChHHHHHHHHHHh
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVP-VSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 253 (843)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.....++...|.. +..++.....-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 478999999999988887654 234578899999999999999877322111111111111 111222222222222111
Q ss_pred CCCCCCccc---cccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEe-cchh
Q 003154 254 MPSSKLSEV---MEDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTV-SNIE 322 (843)
Q Consensus 254 ~~~~~~~~~---~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~ 322 (843)
..+- ..+ .....+++. + +.+.+ .+++-++|+|++... +.++.+...+....+.+.+|++| +...
T Consensus 95 ~~n~--~~~~~~~~~~id~Ir--~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 95 SLNI--SEFDAASNNSVDDIR--L-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred CCCe--EeecccccCCHHHHH--H-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1000 000 011123332 2 22333 245668899999754 47888888877666677766655 3334
Q ss_pred hh
Q 003154 323 IL 324 (843)
Q Consensus 323 v~ 324 (843)
+.
T Consensus 170 l~ 171 (397)
T PRK14955 170 IP 171 (397)
T ss_pred hH
Confidence 43
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0055 Score=70.42 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=37.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988654 2345678999999999999998763
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.08 E-value=0.0014 Score=72.62 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=38.7
Q ss_pred CCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++.|+++.++++.+.+... -...+-|.++|.+|+|||++|+.+++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 347889999999999876431 134566889999999999999999983
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.07 E-value=0.0018 Score=65.54 Aligned_cols=123 Identities=14% Similarity=0.155 Sum_probs=68.8
Q ss_pred Cceecc-hHHHHHHHHHHHc-CCCCceEEEEEcCCCChHHHHHHHHhcCccccccCC--eeEEEEeCCCCChHHHHHHHH
Q 003154 175 NDIVGL-DDKMEELLDHLIE-GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD--CKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 175 ~~~vGr-~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~ 250 (843)
.-++|- .+..-.....+.. ++.....+-|+|..|+|||.|.+++++ ++.+... .+++++ ..++...+.
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHH
Confidence 344563 3333344444443 333456688999999999999999999 4444332 355553 445556666
Q ss_pred HHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhhHH-HHHhcCC-CCCCcEEEEEecch
Q 003154 251 KFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVWEF-IQEILPD-NLNGSRVLTTVSNI 321 (843)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~~~-l~~~~~~-~~~gs~iiiTtR~~ 321 (843)
..+.... . ..+++.+++-. +|++||+... ..|.. +...+.. ...|.+||+|++..
T Consensus 81 ~~~~~~~-------------~--~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 81 DALRDGE-------------I--EEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHTTS-------------H--HHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHccc-------------c--hhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 6554311 1 44555565443 6778999754 23332 2222221 13467899999754
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.0044 Score=68.21 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=37.9
Q ss_pred CceecchHHHHHHHHHHHcCCC--------CceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPP--------QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|-+..++.+.+++..+.. -...+-++|..|+||||+|+.+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3688999999999999986531 245688999999999999998865
No 123
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.06 E-value=0.0018 Score=67.81 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=33.8
Q ss_pred ceecchHHHHHHHHHHHc----------C---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 176 DIVGLDDKMEELLDHLIE----------G---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~----------~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++|.+..+++|.+.... + .+...-+.++|.+|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 588988888777654321 1 23456678999999999999999987
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0022 Score=65.78 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... . ..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~----------------------~--~~~~ 92 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR----------------------G--PELL 92 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh----------------------h--HHHH
Confidence 467899999999999999999873 332223466765432 1110 0 1222
Q ss_pred HHhCCCeEEEEEcCCCCc---hhhHH-HHHhcCC-CCCCcEEEEEecch
Q 003154 278 GYLMSKRYLIVLDDVWTN---DVWEF-IQEILPD-NLNGSRVLTTVSNI 321 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~---~~~~~-l~~~~~~-~~~gs~iiiTtR~~ 321 (843)
+.+++-. +||+||+... ..|+. +...+.. ...|..||+||+..
T Consensus 93 ~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 93 DNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred HhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 2232222 6788999633 35543 4444331 23467889988754
No 125
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0049 Score=69.37 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=37.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++||-+..++.+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 478999999988888887654 234788999999999999998875
No 126
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0019 Score=71.72 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=38.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||-+..+..|..++..+. -...+-++|..|+||||+|+.+++.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999888764 2245789999999999999999873
No 127
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.00 E-value=0.0072 Score=66.53 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=37.8
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+++..+. -...+-++|.+|+||||+|+.+..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999987654 245678899999999999988876
No 128
>PRK12377 putative replication protein; Provisional
Probab=96.96 E-value=0.0031 Score=64.70 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
...+.++|.+|+|||+||..+.+ ......-.++++++. ++...|-...... ... ..+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~--------~~~------~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNG--------QSG------EKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhcc--------chH------HHHH
Confidence 46789999999999999999999 444444446666543 4444444333211 011 1222
Q ss_pred HHhCCCeEEEEEcCCCCc--hhhH--HHHHhcCCC-CCCcEEEEEecc
Q 003154 278 GYLMSKRYLIVLDDVWTN--DVWE--FIQEILPDN-LNGSRVLTTVSN 320 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~--~~~~--~l~~~~~~~-~~gs~iiiTtR~ 320 (843)
+.+ .+-=||||||+... ..|. .+...+... .+.--+||||..
T Consensus 159 ~~l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 159 QEL-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHh-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 223 35568999999433 3343 233332211 122346777763
No 129
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0062 Score=70.53 Aligned_cols=137 Identities=11% Similarity=0.058 Sum_probs=73.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.--..... .... +..++....-+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcC
Confidence 468999998999999888754 24567899999999999999986521110000 0000 0112222222222110
Q ss_pred hCCCCCCccc---cccchHHHHHHHHHHHH----hCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 253 LMPSSKLSEV---MEDRDYEMRKIIHLHGY----LMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 253 l~~~~~~~~~---~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
...+.-.+ .....+++. +.+... ..++.-++|+|+|... +.++.+...+.......++|++|.+
T Consensus 91 --~h~D~~eldaas~~~Vd~iR--eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 91 --RFVDYTELDAASNRGVDEVQ--QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred --CCCceeecCcccccCHHHHH--HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 00000000 011222322 222111 1245568899999865 5677777777665556677766544
No 130
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.95 E-value=0.0045 Score=65.43 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=32.8
Q ss_pred CceecchHHHHHHHHHHHc----------C---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----------G---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----------~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.++.+++|.++..- + .....-+.++|.+|.||||+|+.++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4689998888887664321 1 01122578999999999999987776
No 131
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.001 Score=63.69 Aligned_cols=107 Identities=23% Similarity=0.212 Sum_probs=72.6
Q ss_pred CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccc--hhhhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTA--DDIWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L 617 (843)
...-.+||++|.+..++ .+..+..|..|.+++|.|+.+.+.+-..+++|++|.|.+|++.++- ..+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34567888888876554 4667788888888888888888877556778888888888776662 23566777777775
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGD 666 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 666 (843)
-+|.+..- ..... -.+..+++|+.|+..+.
T Consensus 121 l~Npv~~k------------------~~YR~-yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHK------------------KNYRL-YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcc------------------cCcee-EEEEecCcceEeehhhh
Confidence 55444321 00111 12677888888888753
No 132
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.003 Score=72.28 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=38.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999887653 2356889999999999999999873
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.0018 Score=77.92 Aligned_cols=116 Identities=12% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLL 246 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 246 (843)
...++|.+..++.|.+.+... +....++.++|..|+|||+||+.++.. . +...+.+..++-....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc---
Confidence 456899999999998887642 123457889999999999999999873 3 2334555544321111
Q ss_pred HHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCC-CeEEEEEcCCCCc--hhhHHHHHhcC
Q 003154 247 DNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMS-KRYLIVLDDVWTN--DVWEFIQEILP 306 (843)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~--~~~~~l~~~~~ 306 (843)
.+.+-++..... ...... ..+.+.++. ..-+|+||++... +.++.+...+.
T Consensus 525 -~~~~lig~~~gy--vg~~~~------~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 525 -TVSRLIGAPPGY--VGFEQG------GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -cHHHHhcCCCCC--cccchh------hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 111112221110 111111 223334433 3469999999865 45666666554
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.92 E-value=0.0033 Score=70.74 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCceecchHH--HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC-C-eeEEEEeCCCCChHHHHHHH
Q 003154 174 DNDIVGLDDK--MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF-D-CKAWVPVSILYQPDSLLDNI 249 (843)
Q Consensus 174 ~~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~i 249 (843)
+.-++|-... .....++...++ ...-+-|+|.+|+|||+|++.+++ .+...+ + .++|++. .++..++
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~ 175 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHH
Confidence 3345574333 223333333222 245699999999999999999999 444433 3 3566643 4556666
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhh-HHHHHhcCC-CCCCcEEEEEec
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVW-EFIQEILPD-NLNGSRVLTTVS 319 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~iiiTtR 319 (843)
...+.... . ..+.+.+..+.-+|++||+... ..+ +.+...+.. ...|..||+||.
T Consensus 176 ~~~~~~~~---------~------~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 176 VDSMKEGK---------L------NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHhccc---------H------HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 66554211 1 2233333334558999999743 112 223232221 122457888875
No 135
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.007 Score=72.71 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=73.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-....... ...++....-+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcCCC
Confidence 478999999999999988654 234678999999999999999877422111110 001111111111111100
Q ss_pred CCCCCcccc---ccchHHHHHHHHHHH-----HhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 255 PSSKLSEVM---EDRDYEMRKIIHLHG-----YLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 255 ~~~~~~~~~---~~~~~~~~~~~~l~~-----~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
...+...++ ....+++. + +++ -..+++-++|||++... +.++.|...+..-...+.+|++|.+
T Consensus 87 ~~~dv~eidaas~~~Vd~iR--~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDAR--E-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred CCCcEEEecccccCCHHHHH--H-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 000000000 01122222 1 222 13356667889999754 5777788877766566777666543
No 136
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.90 E-value=0.0025 Score=65.43 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCceecchH-HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 174 DNDIVGLDD-KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 174 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
+.-++|... ....+.++.... ....+.|+|..|+|||+|++.+++. ....-..+.++++.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 344556333 333344443333 2457899999999999999999983 33333345666553
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.90 E-value=0.0031 Score=76.84 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=38.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998654 234469999999999999999874
No 138
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.89 E-value=0.00093 Score=66.06 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCCceecchHHHHHHHHHHHc---CCCCceEEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 173 RDNDIVGLDDKMEELLDHLIE---GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
.-.+|||.+.-++.+.-++.. ......-+-.||++|+||||||.-+.+ +....|
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 346899999998887655543 334577889999999999999999999 455545
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.86 E-value=0.0028 Score=77.25 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=38.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++||+.+++++++.|.... -.-+.++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998765 334558999999999999999884
No 140
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.85 E-value=0.0084 Score=60.27 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCCCceecchHHHHHHHHHHH---cCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHH
Q 003154 171 KNRDNDIVGLDDKMEELLDHLI---EGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLD 247 (843)
Q Consensus 171 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 247 (843)
...-.+++|.|..++.|++=.. .+. ...-+-+||..|.|||++++.+.+...-++ .--|.|++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 4556789999999998876332 222 355677799999999999999988311111 111222211
Q ss_pred HHHHHhCCCCCCccccccchHHHHHHHHHHHHh--CCCeEEEEEcCCCC---chhhHHHHHhcCCC---CC-CcEEEEEe
Q 003154 248 NIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYL--MSKRYLIVLDDVWT---NDVWEFIQEILPDN---LN-GSRVLTTV 318 (843)
Q Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~---~~~~~~l~~~~~~~---~~-gs~iiiTt 318 (843)
+...+ ..|...+ +..||+|++||+.= +.....++..+..+ .+ .-.|..||
T Consensus 90 ------------------~L~~l---~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 90 ------------------DLGDL---PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred ------------------HhccH---HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 11111 3333333 35799999999852 34677777776632 22 23445555
Q ss_pred cchhhhh
Q 003154 319 SNIEILT 325 (843)
Q Consensus 319 R~~~v~~ 325 (843)
..++...
T Consensus 149 NRRHLv~ 155 (249)
T PF05673_consen 149 NRRHLVP 155 (249)
T ss_pred chhhccc
Confidence 5555543
No 141
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.0061 Score=65.85 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=79.2
Q ss_pred CCCCceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHH
Q 003154 172 NRDNDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNI 249 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 249 (843)
..+..++||+.++..+.+|+... .+...-+-|.|.+|.|||.+...++.+..-...=.+++++....--...+++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 45678999999999999999764 3457788899999999999999999863222111245666655545677788888
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhCCC--eEEEEEcCCCC
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSK--RYLIVLDDVWT 294 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~ 294 (843)
...+..... ......+.. ..+.+..+.. -+|+|||.++.
T Consensus 227 ~~~~~q~~~----s~~~~~~~~--~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 227 FSSLLQDLV----SPGTGMQHL--EKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHHhc----CCchhHHHH--HHHHHHHhcccceEEEEechhhH
Confidence 887732111 111113344 5555665443 48999999854
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.83 E-value=0.0046 Score=69.86 Aligned_cols=47 Identities=30% Similarity=0.286 Sum_probs=37.7
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|.+..+++|.+.+... -...+-+-++|.+|.|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 46889999999998876431 123456889999999999999999994
No 143
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00027 Score=81.36 Aligned_cols=256 Identities=23% Similarity=0.164 Sum_probs=129.4
Q ss_pred ccCCcccEEEcCCCCCC---CCc-hhccCCCCccEEEccCC-CCcc--cchhHhhCCccCcEEeCCCC--cCcccc----
Q 003154 537 KMFKFLRVLDLGSLFLD---QYP-AGIENLSRLRYLKLNIP-SLKS--LPSSLLSNLLNLYTLDMPSS--YIDHTA---- 603 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~---~lp-~~i~~L~~Lr~L~L~~~-~i~~--lp~~i~~~L~~L~~L~L~~~--~l~~lp---- 603 (843)
.....+..+.+..+... ... .-...+++|+.|.+.++ .+.. +-+.. ..+++|+.|++++| .....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 236 (482)
T KOG1947|consen 158 RGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLL 236 (482)
T ss_pred HHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhh
Confidence 34445555555544322 111 11234788888888875 4444 33444 78999999999983 222222
Q ss_pred hhhhcccccccccccccc-cCCCCCC----CCCCccccccccccC-CCCCCccccCCCCCCceEeeecCCcchhhhhhHh
Q 003154 604 DDIWKLNKLRHLNFGLIT-LPAHPGK----YCSSLENLNFISALH-PRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKS 677 (843)
Q Consensus 604 ~~i~~L~~L~~L~L~~~~-l~~~~~~----~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 677 (843)
.....+.+|++|+++.+. ++...+. .|++|++|....+.. ....+......+++|+.|+++.+.......+...
T Consensus 237 ~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 237 LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 234456888899876655 3332111 356666666222321 2233333344566666666665444333333333
Q ss_pred hcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCC---CCcccccCCCCCcEEEeecccccCCccccC
Q 003154 678 LHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLID---DPMPTLEKLPYLQVLKLKQNSYSGRKLACG 754 (843)
Q Consensus 678 l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 754 (843)
...+++|+.|.+..... . ..++.+.+.++.... ...-.+..+++|+.+.|..+.......
T Consensus 317 ~~~c~~l~~l~~~~~~~-------------c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 379 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSLNG-------------C-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--- 379 (482)
T ss_pred HHhCcchhhhhhhhcCC-------------C-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch---
Confidence 44455555544432111 2 345555555443211 112234568888888887665332222
Q ss_pred CCCCCcccEEEecCcccc-cccccccccccccceEeeecCCCCCCCCc-cccC-CCCCcEEEecCCC
Q 003154 755 SDGFPKLKVLHLKSMIWL-EEWTMGNEAMPKLECLVVNPCAYLKRLPE-HLWC-MKNFKKLELWWPQ 818 (843)
Q Consensus 755 ~~~f~~L~~L~L~~~~~l-~~l~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~-l~~L~~L~l~~~~ 818 (843)
.+.+.+|+.+ ..+.......+.|+.|.+..|...+.--. .... +.++..+++.+|+
T Consensus 380 --------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 380 --------ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred --------HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 2233334433 22222222333377788887775542111 1111 5667777777777
No 144
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.00041 Score=69.36 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=56.5
Q ss_pred HhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCC--CCc-ccchhHhhCCccCcEEeCCCCcCccc--chhhhcc
Q 003154 535 ICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIP--SLK-SLPSSLLSNLLNLYTLDMPSSYIDHT--ADDIWKL 609 (843)
Q Consensus 535 ~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~l--p~~i~~L 609 (843)
....+..|..|++.++.++++- .+-.|++|++|.++.| .+. .++..+ .++++|++|++++|.+..+ -..+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhh
Confidence 3444555666666665544321 3446778888888888 444 666665 6778888888888866543 1236677
Q ss_pred cccccccccccccCC
Q 003154 610 NKLRHLNFGLITLPA 624 (843)
Q Consensus 610 ~~L~~L~L~~~~l~~ 624 (843)
.+|..|++++|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 778888866655544
No 145
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.81 E-value=0.014 Score=57.68 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 282 SKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 282 ~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
+.+-++|+||+... +.++.+...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 55678999998654 45777877777655667787777653
No 146
>PRK07261 topology modulation protein; Provisional
Probab=96.81 E-value=0.0033 Score=61.04 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccc-ccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHH
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVK-HYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHG 278 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (843)
.|.|+|++|+||||||+.+.....+. -+.|...|-..- ...+.++.. ..+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-------------------------~~~~~~~~~--~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-------------------------QERDDDDMI--ADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-------------------------ccCCHHHHH--HHHHH
Confidence 48999999999999999998642221 234555552111 112234445 56666
Q ss_pred HhCCCeEEEEEcCCCCc
Q 003154 279 YLMSKRYLIVLDDVWTN 295 (843)
Q Consensus 279 ~l~~kr~LlVlDdvw~~ 295 (843)
.+.+.+ .|+|+....
T Consensus 55 ~~~~~~--wIidg~~~~ 69 (171)
T PRK07261 55 FLLKHD--WIIDGNYSW 69 (171)
T ss_pred HHhCCC--EEEcCcchh
Confidence 676666 577887543
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.80 E-value=0.0041 Score=69.67 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred CceecchHH--HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCC--eeEEEEeCCCCChHHHHHHHH
Q 003154 175 NDIVGLDDK--MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD--CKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 175 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~ 250 (843)
.-++|.+.. ...+.++....+.....+.|+|..|+|||+|++.+++ ++..... .+++++ ..++..++.
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~ 182 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFV 182 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHH
Confidence 335675543 2223333333222345688999999999999999999 4444332 355554 334445555
Q ss_pred HHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhh-HHHHHhcCC-CCCCcEEEEEecc
Q 003154 251 KFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVW-EFIQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~iiiTtR~ 320 (843)
..+... .. ..+.+.+++ .-+|||||+... +.+ +.+...+.. ...|..||+||..
T Consensus 183 ~~~~~~---------~~------~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 183 NALRNN---------KM------EEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHcC---------CH------HHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 555321 11 233334433 237889999743 122 223332221 1235568888764
No 148
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.01 Score=65.52 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=39.0
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+...+.+.+.+..+. -...+-++|.+|+||||+|+.+.+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998653 3457889999999999999999773
No 149
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.015 Score=67.20 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=38.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999998653 2345789999999999999998873
No 150
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.78 E-value=0.00021 Score=80.29 Aligned_cols=105 Identities=23% Similarity=0.280 Sum_probs=83.7
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCCCccEEEccCCCCcccchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIPSLKSLPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 589 (843)
.+.+++|.+..+...+ ..++..++.|+.|||++|.+..+|.- ...+ +|..|++++|.++++- .+ .+|.+|
T Consensus 186 l~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gi-e~LksL 256 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR-GI-ENLKSL 256 (1096)
T ss_pred HHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh-hH-Hhhhhh
Confidence 8899999998877642 35789999999999999999877742 2233 4999999999998885 44 899999
Q ss_pred cEEeCCCCcCccc--chhhhcccccccccccccccCC
Q 003154 590 YTLDMPSSYIDHT--ADDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 590 ~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~l~~ 624 (843)
+.||+++|-+... -..++.|..|+.|+|.+|.+-.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9999999966443 2348889999999988887754
No 151
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.76 E-value=0.004 Score=68.77 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.++.|.+..+++|.+.+... -...+-+.++|.+|.|||+||+.+++.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999988876421 124667889999999999999999983
No 152
>PRK09183 transposase/IS protein; Provisional
Probab=96.74 E-value=0.0037 Score=65.01 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+.|+|.+|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999977
No 153
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.0081 Score=61.51 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcccc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVM 263 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 263 (843)
+..+.++...-..+...+.++|.+|+|||+||..+++. ....-..+++++ ..++...+-......
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~------- 149 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNS------- 149 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhc-------
Confidence 44444444433333457889999999999999999994 333333455553 344554444333210
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHH--HHHhcCC-CCCCcEEEEEecc
Q 003154 264 EDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEF--IQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 264 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~--l~~~~~~-~~~gs~iiiTtR~ 320 (843)
..+. ..+.+.+. +-=+||+||+... .+|+. +..-+.. -...-.+||||..
T Consensus 150 ~~~~------~~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 150 ETSE------EQLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cccH------HHHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 0111 23334454 3447888999654 45553 2222221 1123457777764
No 154
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.70 E-value=0.0069 Score=61.96 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=29.7
Q ss_pred ecchHHH-HHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 178 VGLDDKM-EELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 178 vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.|..... ..+.++.. +......+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4554444 33444333 2334567889999999999999999984
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.68 E-value=0.0057 Score=69.44 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred ceecchHH--HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCC--eeEEEEeCCCCChHHHHHHHHH
Q 003154 176 DIVGLDDK--MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD--CKAWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 176 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~ 251 (843)
-++|.... ......+....+....-+.|+|..|+|||+|++.+.+ ++...+. .+++++. .++..++..
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~ 195 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVN 195 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHH
Confidence 35564332 3333344333333346689999999999999999999 4555443 2455543 233444444
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhh-HHHHHhcCC-CCCCcEEEEEecc
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVW-EFIQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~iiiTtR~ 320 (843)
.+... .. ..+.+.++. --+|||||+... +.+ +.+...+.. ...|..||+||..
T Consensus 196 ~~~~~---------~~------~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 196 ALRNN---------TM------EEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred HHHcC---------cH------HHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 44321 11 233344442 347889999643 112 233332221 1224568888765
No 156
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.68 E-value=0.0065 Score=65.31 Aligned_cols=106 Identities=11% Similarity=-0.025 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-cCCe-eEEEEeCCC-CChHHHHHHHHHHhCCCCC-
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFDC-KAWVPVSIL-YQPDSLLDNIIKFLMPSSK- 258 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~- 258 (843)
-..++++.+..-.. -+.+.|+|.+|+|||||++.+.+. +.. +=+. ++|+.+.+. ..+.++.+.+...+..+..
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 34457777765332 346699999999999999998883 333 2244 477777764 5678888888876665321
Q ss_pred CccccccchHHHHHHHHHHHHh--CCCeEEEEEcCCC
Q 003154 259 LSEVMEDRDYEMRKIIHLHGYL--MSKRYLIVLDDVW 293 (843)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw 293 (843)
.+........... ..+-+++ ++++++||+|++-
T Consensus 196 e~~~~~~~v~~~~--~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELV--LERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHH--HHHHHHHHHcCCCEEEEEeCcH
Confidence 0000001111111 1222222 5899999999994
No 157
>PRK06526 transposase; Provisional
Probab=96.68 E-value=0.0028 Score=65.52 Aligned_cols=24 Identities=25% Similarity=0.101 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..-+.++|.+|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345899999999999999999874
No 158
>PRK09087 hypothetical protein; Validated
Probab=96.67 E-value=0.0069 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998874
No 159
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.67 E-value=0.0052 Score=63.45 Aligned_cols=103 Identities=11% Similarity=0.121 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCC-eeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch---HHH--
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD-CKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD---YEM-- 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~-- 270 (843)
=+-++|+|-.|+|||||++.+++ .++.+|+ .++++-+.+.. .+.++.+++...=......--....+. ...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999999999999 5665664 45666666654 345555555442111000000001110 000
Q ss_pred -HHHHHHHHHh---CCCeEEEEEcCCCCc-hhhHHHH
Q 003154 271 -RKIIHLHGYL---MSKRYLIVLDDVWTN-DVWEFIQ 302 (843)
Q Consensus 271 -~~~~~l~~~l---~~kr~LlVlDdvw~~-~~~~~l~ 302 (843)
.-|-.+.+++ +++.+|+|+||+-.. +.+.++.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 0013344444 389999999999433 3344443
No 160
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.012 Score=68.46 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=37.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999887653 2345889999999999999888763
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.64 E-value=0.0038 Score=75.86 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=38.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH
Confidence 578999999999999987764 334569999999999999999883
No 162
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.64 E-value=0.016 Score=60.19 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=77.0
Q ss_pred CCCceecchHH---HHHHHHHHHcCC-CCceEEEEEcCCCChHHHHHHHHhcCccccccCC------eeEEEEeCCCCCh
Q 003154 173 RDNDIVGLDDK---MEELLDHLIEGP-PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD------CKAWVPVSILYQP 242 (843)
Q Consensus 173 ~~~~~vGr~~~---~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~------~~~wv~~s~~~~~ 242 (843)
..+..||-... ++++.++|..+. .+..-+.|||-.|+|||++++++....- ..++ .++.|.....++.
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp--~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP--PQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC--CCCCCCCccccEEEEecCCCCCh
Confidence 34556664333 445555555443 3567799999999999999999986411 1121 3777778889999
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCC-CeEEEEEcCCCC
Q 003154 243 DSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMS-KRYLIVLDDVWT 294 (843)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~ 294 (843)
..+...|+.+++.... ...+...+. ......++. +--+||+|.+.+
T Consensus 110 ~~~Y~~IL~~lgaP~~----~~~~~~~~~--~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 110 RRFYSAILEALGAPYR----PRDRVAKLE--QQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHHhCcccC----CCCCHHHHH--HHHHHHHHHcCCcEEEeechHH
Confidence 9999999999998543 233444555 555556643 344788899965
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.032 Score=60.64 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
....++|-++..+.+...+..+. -...+-|+|..|+||||+|+.+.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH
Confidence 44678999999999999987664 3456888999999999999988773
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.63 E-value=0.012 Score=65.32 Aligned_cols=224 Identities=17% Similarity=0.066 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcc
Q 003154 182 DKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSE 261 (843)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 261 (843)
.-..++++.+.... .++.|.|.-++||||+++.+... .... .+++..........-+.+..
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------
Confidence 33444444443322 29999999999999999777663 2222 45554332211111011111
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhhh-cc-------------
Q 003154 262 VMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILT-SF------------- 327 (843)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~-~~------------- 327 (843)
..+.+.-..++..|+||.|....+|+.....+.+.++. +|+||+-+..+.. ..
T Consensus 85 ------------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 85 ------------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred ------------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 11111111278899999999999999998888877766 8999988776655 11
Q ss_pred cc--------CCCCcCCcccccccchhhhhcCCchhHHHHHhhhhH-HHHH-HhhhcccccchhhccCCCchhhhhHHhh
Q 003154 328 QL--------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSL-EENR-EKILAEPFGDQVLTYSKFPLYFKLCGLY 397 (843)
Q Consensus 328 ~~--------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~-~~~~-~~~~~~~~~~l~~sy~~L~~~~k~cfl~ 397 (843)
-| ..+...........-+-.-..||.|-++..-...-+ ..+. .... .++....-..=+..++..+.+
T Consensus 152 ~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~---~Di~~~~~~~~~~~~k~i~~~ 228 (398)
T COG1373 152 YPLSFREFLKLKGEEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILK---RDIIERGKIENADLMKRILRF 228 (398)
T ss_pred CCCCHHHHHhhcccccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHH---HHHHHHcCcccHHHHHHHHHH
Confidence 12 000000000001122233457899988764332111 0000 0001 122222111011345555555
Q ss_pred hccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeEEEE
Q 003154 398 LSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQVKR 447 (843)
Q Consensus 398 ~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~~~~ 447 (843)
++... +..++-..+.+.+- |. .......|++-|.+.-++....
T Consensus 229 l~~~~-g~~~s~~~la~~l~--~i----s~~Ti~~Yl~~le~~fll~~~~ 271 (398)
T COG1373 229 LASNI-GSPISYSSLARELK--GI----SKDTIRKYLSYLEDAFLLFLVP 271 (398)
T ss_pred HHhhc-CCccCHHHHHHHHh--cc----chHHHHHHHHHHHHhhheEEec
Confidence 55443 33455566666553 11 2567888898888888877443
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.62 E-value=0.0079 Score=73.36 Aligned_cols=133 Identities=14% Similarity=0.228 Sum_probs=73.3
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLL 246 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 246 (843)
...++|-+..++.|.+.+... +....++-++|..|+|||+||+.+.+ .+-..-+..+-+..+.-.+...+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHH
Confidence 467899999999998887632 22345677899999999999999886 221111223333443322211111
Q ss_pred HHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCe-EEEEEcCCCCc--hhhHHHHHhcCCC-----------CCCc
Q 003154 247 DNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKR-YLIVLDDVWTN--DVWEFIQEILPDN-----------LNGS 312 (843)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~--~~~~~l~~~~~~~-----------~~gs 312 (843)
+-++...+. ...... ..+.+.++.+. -++++|++... +.++.+...+..+ ...+
T Consensus 586 ----~l~g~~~gy--vg~~~~------~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 586 ----KLIGSPPGY--VGYNEG------GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred ----HhcCCCCcc--cCcCcc------chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 111211110 111111 23344444444 58889999765 4566666665532 1345
Q ss_pred EEEEEecc
Q 003154 313 RVLTTVSN 320 (843)
Q Consensus 313 ~iiiTtR~ 320 (843)
-||+||..
T Consensus 654 i~I~Tsn~ 661 (821)
T CHL00095 654 LIIMTSNL 661 (821)
T ss_pred EEEEeCCc
Confidence 56666664
No 166
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.016 Score=67.30 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999988654 2446788999999999999999874
No 167
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.60 E-value=0.0049 Score=74.22 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=38.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999887664 334568999999999999999884
No 168
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.58 E-value=0.015 Score=59.41 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=59.7
Q ss_pred HHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC------CeeEEEEeCCCCChHHHHHHHHHHhCCCCC-C-cc
Q 003154 190 HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF------DCKAWVPVSILYQPDSLLDNIIKFLMPSSK-L-SE 261 (843)
Q Consensus 190 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~-~~ 261 (843)
+|..+=..-.++.|+|.+|+|||+||.++.-. ....- ..++|++....++...+. ++++......+ . ..
T Consensus 11 ~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~ 87 (226)
T cd01393 11 LLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDN 87 (226)
T ss_pred HhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhcc
Confidence 33344345789999999999999999988763 22223 467899988777765543 44444332110 0 00
Q ss_pred ---ccccchHHHHHHHHHHHHhC----CCeEEEEEcCCC
Q 003154 262 ---VMEDRDYEMRKIIHLHGYLM----SKRYLIVLDDVW 293 (843)
Q Consensus 262 ---~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdvw 293 (843)
....+.+++. ..+.+..+ .+--|||+|.+.
T Consensus 88 i~~~~~~~~~~~~--~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 88 IYVARPYNGEQQL--EIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred EEEEeCCCHHHHH--HHHHHHHHHhhcCCeeEEEEcCcc
Confidence 1223445555 55555443 344589999984
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.57 E-value=0.0053 Score=75.11 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=37.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++||+.++.++++.|.... -.-+.++|.+|+|||++|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999997765 334457999999999999998874
No 170
>PRK06620 hypothetical protein; Validated
Probab=96.56 E-value=0.0081 Score=60.56 Aligned_cols=49 Identities=14% Similarity=-0.032 Sum_probs=31.4
Q ss_pred CCCceecc-hH-HHHHHHHHHHcCCCCc--eEEEEEcCCCChHHHHHHHHhcC
Q 003154 173 RDNDIVGL-DD-KMEELLDHLIEGPPQL--SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 173 ~~~~~vGr-~~-~~~~l~~~L~~~~~~~--~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+.-+||- .. ....+.++-...+.+. +.+-|+|.+|+|||+|++.+++.
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 34556675 22 3344444433211112 67899999999999999998874
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.55 E-value=0.0065 Score=73.81 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=38.6
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++|.++.++.+.+.+... .....++.++|..|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999988531 23456889999999999999998876
No 172
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.0003 Score=70.08 Aligned_cols=238 Identities=18% Similarity=0.155 Sum_probs=135.4
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC----CCc-------hhccCCCCccEEEccCCCCc-cc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD----QYP-------AGIENLSRLRYLKLNIPSLK-SL 578 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~----~lp-------~~i~~L~~Lr~L~L~~~~i~-~l 578 (843)
...+..+.++|+....-....+...+.+-++|++.++++...+ ++| +.+-+|++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556666777766542112244455666788888888875432 333 45568899999999998776 44
Q ss_pred chhH---hhCCccCcEEeCCCCcCcccchh-hh-------------cccccccccccccccCCCCCCCCCCccccccccc
Q 003154 579 PSSL---LSNLLNLYTLDMPSSYIDHTADD-IW-------------KLNKLRHLNFGLITLPAHPGKYCSSLENLNFISA 641 (843)
Q Consensus 579 p~~i---~~~L~~L~~L~L~~~~l~~lp~~-i~-------------~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~ 641 (843)
|+.+ +++-.+|.+|.+++|.+..+..+ |+ +-|.|+....+.|++...+..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~------------- 175 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE------------- 175 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH-------------
Confidence 4432 36778899999999977654221 22 235566666666655432110
Q ss_pred cCCCCCCccccCCCCCCceEeeecCCcchhh-----hhhHhhcCCCCCCeEEeecCCCCCCCceEee--ccCCCCCCccE
Q 003154 642 LHPRCCTPDILGRLPKLGSLQICGDLNYYQS-----LLSKSLHGLSCLESLKLVNESKMPRLSKIVL--FENQFPPSLTH 714 (843)
Q Consensus 642 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~ 714 (843)
.....+..-.+|+.+.+.. |.+.. .....+..+.+|+.|+|..|. ++..-+..+ ..+.. +.|+.
T Consensus 176 -----~~a~~l~sh~~lk~vki~q--NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W-~~lrE 246 (388)
T COG5238 176 -----LSAALLESHENLKEVKIQQ--NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW-NLLRE 246 (388)
T ss_pred -----HHHHHHHhhcCceeEEeee--cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc-chhhh
Confidence 0001133334566666654 32221 122344556777777777653 111111111 22333 56788
Q ss_pred EEEecCCCCCCCccc----cc--CCCCCcEEEeecccccCCccc------cCCCCCCcccEEEecCcc
Q 003154 715 LSFSNTDLIDDPMPT----LE--KLPYLQVLKLKQNSYSGRKLA------CGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 715 L~L~~~~l~~~~~~~----l~--~l~~L~~L~L~~~~~~~~~~~------~~~~~f~~L~~L~L~~~~ 770 (843)
|.+..|-++...... +. ..|+|..|...+|...+..+. +.....|-|..|.+.+|.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 888888766443322 21 368888888888766543322 123457888888888765
No 173
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.54 E-value=0.0093 Score=63.48 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHHcCC--CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCC
Q 003154 179 GLDDKMEELLDHLIEGP--PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPS 256 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 256 (843)
++....+...+++..-. ...+-+.++|..|+|||.||..+++. ....=..+.++++ .+++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhcC
Confidence 45555555666665422 13467889999999999999999994 3332233455554 34555555444211
Q ss_pred CCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHH--HHHhc-CCC-CCCcEEEEEecc
Q 003154 257 SKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEF--IQEIL-PDN-LNGSRVLTTVSN 320 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~--l~~~~-~~~-~~gs~iiiTtR~ 320 (843)
... ..+ +.++ +-=||||||+..+ .+|.. +...+ ... ..+-.+|+||.-
T Consensus 207 ------------~~~--~~l-~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 ------------SVK--EKI-DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ------------cHH--HHH-HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111 222 2232 4558899999654 46643 44333 221 235567888774
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.53 E-value=0.0084 Score=61.24 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=55.6
Q ss_pred HHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHH-hCC-CCCCccccccch
Q 003154 190 HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKF-LMP-SSKLSEVMEDRD 267 (843)
Q Consensus 190 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~-~~~~~~~~~~~~ 267 (843)
+|..+=..-.++.|+|.+|+||||+|.++... ....-..++|++.. .++...+. +++.. +.. .....-....+.
T Consensus 15 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (225)
T PRK09361 15 LLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSF 90 (225)
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCH
Confidence 33344345679999999999999999998873 33344678999887 56655543 33332 100 000000111222
Q ss_pred HHHH-HHHHHHHHhCCCeEEEEEcCC
Q 003154 268 YEMR-KIIHLHGYLMSKRYLIVLDDV 292 (843)
Q Consensus 268 ~~~~-~~~~l~~~l~~kr~LlVlDdv 292 (843)
.+.. ..+.+.+.++.+--++|+|.+
T Consensus 91 ~~~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 91 EEQSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeCc
Confidence 2221 003344444456668999998
No 175
>PRK06921 hypothetical protein; Provisional
Probab=96.52 E-value=0.0068 Score=63.24 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc-CCeeEEEEe
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-FDCKAWVPV 236 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 236 (843)
..-+.++|..|+|||+||..+++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 567899999999999999999994 4433 344566664
No 176
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.0096 Score=69.66 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=75.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.....+ .....++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCC
Confidence 478999999999998887653 23556789999999999999998731111100 00112233333334433221
Q ss_pred CCCCCccc---cccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 255 PSSKLSEV---MEDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 255 ~~~~~~~~---~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
.. .-.+ .....+++. .+.+.+ .+++-++|+|++... +..+.|...+......+.+|++|.+
T Consensus 89 ~d--~~~i~~~~~~~vd~ir---~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 89 VD--VIEMDAASHTSVDDAR---EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred Ce--EEEEeccccCCHHHHH---HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 10 0000 011222222 122222 245678999998644 4577777766655556677766644
No 177
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.50 E-value=0.018 Score=69.82 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=40.9
Q ss_pred CCceecchHHHHHHHHHHHc----CCCCceEEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 174 DNDIVGLDDKMEELLDHLIE----GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
+.+++|.+..+++|.+++.. +..+-.++.++|.+|+|||++|+.+.+ .....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 45689999999999987653 222345899999999999999999998 344444
No 178
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.026 Score=65.04 Aligned_cols=133 Identities=8% Similarity=0.054 Sum_probs=72.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+..-.....+ ...++....-+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 467898888888888887643 245677899999999999999987422111110 112222222222222110
Q ss_pred CCCCCcccc---ccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 255 PSSKLSEVM---EDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 255 ~~~~~~~~~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
. +...+. ....+++. .+.+.+ .+++-+||+|++... +.++.|...+........+|++|..
T Consensus 88 p--Dv~eId~a~~~~Id~iR---~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 88 V--DVVEIDGASNRGIDDAK---RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred C--ceEEEecccccCHHHHH---HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 0 000010 11122222 222222 356678999999654 5667777776544445666666554
No 179
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.47 E-value=0.0026 Score=67.96 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=41.0
Q ss_pred CceecchHHHHHHHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.++.++++++++... +...++++++|.+|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999763 235689999999999999999999884
No 180
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.45 E-value=0.0082 Score=67.64 Aligned_cols=123 Identities=13% Similarity=0.178 Sum_probs=66.6
Q ss_pred ceecchHH--HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCCCCChHHHHHHHHH
Q 003154 176 DIVGLDDK--MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 176 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~ 251 (843)
-++|-... ......+....+....-+.|+|..|+|||+|++.+.+ .+.... -.+++++ ..++...+..
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~ 188 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVD 188 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHH
Confidence 45565433 2233333332232345688999999999999999998 333322 2234443 3456667666
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhh-HHHHHhcCC-CCCCcEEEEEecc
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVW-EFIQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~iiiTtR~ 320 (843)
.+.... + .. ..+++.++. .-+||+||+... +.+ +.+...+.. ...|..||+|+..
T Consensus 189 ~l~~~~----------~-~~--~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 189 ILQKTH----------K-EI--EQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHhh----------h-HH--HHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 654210 1 11 334444443 347888999643 222 334333331 1235578888764
No 181
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.45 E-value=0.0069 Score=67.40 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=39.3
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
.++.|.+..+++|.+.+.-. -....-+.++|.+|.|||++|+.+++ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 45789999999988877421 12345678999999999999999999 444444
No 182
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.027 Score=65.85 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=37.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998754 235578999999999999988766
No 183
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.007 Score=67.97 Aligned_cols=99 Identities=8% Similarity=0.141 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
..-+.|+|..|+|||+|++.+++. +...--.+++++ ..++...+...+.... . ..++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~~-------------~--~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSGE-------------M--QRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcch-------------H--HHHH
Confidence 456889999999999999999993 433223345554 3344455555543210 1 3344
Q ss_pred HHhCCCeEEEEEcCCCCch---h-hHHHHHhcCC-CCCCcEEEEEecc
Q 003154 278 GYLMSKRYLIVLDDVWTND---V-WEFIQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~~---~-~~~l~~~~~~-~~~gs~iiiTtR~ 320 (843)
+.++. .-+|++||+.... . -+.+...+.. ...|..||+||..
T Consensus 198 ~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 198 QFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred HHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 44443 3478889986432 1 1223332221 1135678888854
No 184
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0019 Score=58.64 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
||+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.42 E-value=0.02 Score=69.91 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++|.+..++.|...+... +....++.++|..|+|||++|+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999998888642 22245788999999999999999987
No 186
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00049 Score=68.88 Aligned_cols=63 Identities=29% Similarity=0.365 Sum_probs=28.2
Q ss_pred HHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhH-hhCCccCcEEeCCCC
Q 003154 534 KICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSL-LSNLLNLYTLDMPSS 597 (843)
Q Consensus 534 ~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~~L~~L~~L~L~~~ 597 (843)
.++.+|+.|.||.|+-|.|..+- .+..|++|+.|.|+.|.|..+.+-. +.+|++|++|.|..|
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 34445555555555555544432 3444445555555554444333211 134444444444444
No 187
>PHA00729 NTP-binding motif containing protein
Probab=96.40 E-value=0.0093 Score=59.69 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 8 ~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 444444443 56789999999999999999988
No 188
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.37 E-value=0.019 Score=70.29 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=38.9
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++|.+..++.+.+.+... .....++.++|..|+|||++|+.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999988752 12256788999999999999999987
No 189
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.041 Score=62.64 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=37.3
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|-+...+.+...+..+. -..+.-++|..|+||||+|+.+.+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999987654 344668899999999999997766
No 190
>CHL00176 ftsH cell division protein; Validated
Probab=96.32 E-value=0.012 Score=68.88 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=34.8
Q ss_pred CceecchHHHHHHHHHH---HcCC-------CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHL---IEGP-------PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.++.++++.+.+ ..+. ...+-|.++|.+|.|||+||+.+++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889888777765554 3321 12456889999999999999999884
No 191
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.31 E-value=0.013 Score=60.24 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=58.1
Q ss_pred HHcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc----CCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-Cc-c---
Q 003154 191 LIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY----FDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-LS-E--- 261 (843)
Q Consensus 191 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~-~--- 261 (843)
|..+=..-.++.|+|.+|+||||||.+++-....... -..++|++....++..++. ++++..+.... .. .
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~ 90 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYV 90 (235)
T ss_pred ccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEE
Confidence 3334345689999999999999999999753222222 3679999988877765543 34444432110 00 0
Q ss_pred ccccchHHHH-HHHHHHHHhC-C-CeEEEEEcCCC
Q 003154 262 VMEDRDYEMR-KIIHLHGYLM-S-KRYLIVLDDVW 293 (843)
Q Consensus 262 ~~~~~~~~~~-~~~~l~~~l~-~-kr~LlVlDdvw 293 (843)
....+.+++. -...+...+. . +--|||+|-+.
T Consensus 91 ~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 91 ARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred EecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1111222222 0033444443 3 56789999884
No 192
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.31 E-value=0.017 Score=58.25 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=39.9
Q ss_pred HHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHH
Q 003154 191 LIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLD 247 (843)
Q Consensus 191 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 247 (843)
|..+=..-.++-|+|.+|+|||++|.++... ....-..++|++... ++...+.+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 3333345789999999999999999988773 334456799999876 66665544
No 193
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0081 Score=71.58 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=38.0
Q ss_pred CceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|-++.++.|.+.+... ......+-++|..|+|||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988732 22356788999999999999999987
No 194
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.051 Score=61.76 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999997753 234567899999999999999876
No 195
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.27 E-value=0.01 Score=70.71 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=37.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999988754 233457999999999999999873
No 196
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0052 Score=62.60 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHc-CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 179 GLDDKMEELLDHLIE-GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|++-+++|.+.+.. ..++..+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 466778888888765 344689999999999999999999987
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0065 Score=58.40 Aligned_cols=104 Identities=21% Similarity=0.250 Sum_probs=55.6
Q ss_pred CccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccc--cccccccccceE
Q 003154 711 SLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWT--MGNEAMPKLECL 788 (843)
Q Consensus 711 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~--~~~~~lp~L~~L 788 (843)
....++|++|.+.. .+.|..++.|..|.|.+|.++... +.....+|+|+.|.+.+|. +..+. .....+|+|+.|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 34555666655422 334555666666666666555422 1122336666666666654 33331 123466777777
Q ss_pred eeecCCCCCCC---CccccCCCCCcEEEecCCC
Q 003154 789 VVNPCAYLKRL---PEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 789 ~l~~c~~l~~l---p~~l~~l~~L~~L~l~~~~ 818 (843)
.+-+||....- --.+..+|+|+.||+.+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77776633210 1145567777777777655
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.25 E-value=0.016 Score=55.47 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQ 241 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 241 (843)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 333335677877765543
No 199
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.035 Score=62.68 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=37.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999997654 235677899999999999988876
No 200
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.22 E-value=0.004 Score=61.58 Aligned_cols=53 Identities=21% Similarity=0.116 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEE
Q 003154 179 GLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVP 235 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (843)
.+..+-...++.|.. ..++.+.|.+|.|||.||....-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 455666677777772 66999999999999999988887644568899888875
No 201
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.0011 Score=76.30 Aligned_cols=241 Identities=20% Similarity=0.191 Sum_probs=132.9
Q ss_pred chHHHhccCCcccEEEcCCCC-CCC--CchhccCCCCccEEEccCC--CCcccc---hhHhhCCccCcEEeCCCCc-Ccc
Q 003154 531 DSMKICKMFKFLRVLDLGSLF-LDQ--YPAGIENLSRLRYLKLNIP--SLKSLP---SSLLSNLLNLYTLDMPSSY-IDH 601 (843)
Q Consensus 531 ~~~~~~~~~~~LrvL~L~~~~-~~~--lp~~i~~L~~Lr~L~L~~~--~i~~lp---~~i~~~L~~L~~L~L~~~~-l~~ 601 (843)
........+++|+.|.+.++. +.. +-.....+++|+.|+++++ .+...+ ..+...+++|+.|++++|. +..
T Consensus 179 ~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 344556668999999999874 443 4456678999999999873 222111 2233677999999999995 654
Q ss_pred c-chhhh-cccccccccccccc-cCCCCC----CCCCCccccccccccCCCC-CCccccCCCCCCceEeeecCCcchhhh
Q 003154 602 T-ADDIW-KLNKLRHLNFGLIT-LPAHPG----KYCSSLENLNFISALHPRC-CTPDILGRLPKLGSLQICGDLNYYQSL 673 (843)
Q Consensus 602 l-p~~i~-~L~~L~~L~L~~~~-l~~~~~----~~l~~L~~L~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~ 673 (843)
. -..+. .+++|++|.++++. ++...+ ..+++|++|....+..... .+.....++++|+.|.+..+..
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----- 333 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----- 333 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----
Confidence 4 22333 48899999966555 443322 1788899998765553211 1222244577777766554221
Q ss_pred hhHhhcCCCCCCeEEeecCCC-C-CCCceEeeccCCCCCCccEEEEecCCCCCCC-cccccCCCCCcEEEeecccccCCc
Q 003154 674 LSKSLHGLSCLESLKLVNESK-M-PRLSKIVLFENQFPPSLTHLSFSNTDLIDDP-MPTLEKLPYLQVLKLKQNSYSGRK 750 (843)
Q Consensus 674 l~~~l~~l~~L~~L~l~~~~~-~-~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~ 750 (843)
+..++.+.+..... . ..+..+ ..... ++++.+.+..|...... ...+..+|+|. ..+.
T Consensus 334 -------c~~l~~~~l~~~~~~~~d~~~~~--~~~~~-~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~-------- 394 (482)
T KOG1947|consen 334 -------CPSLTDLSLSGLLTLTSDDLAEL--ILRSC-PKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE-------- 394 (482)
T ss_pred -------CccHHHHHHHHhhccCchhHhHH--HHhcC-CCcchhhhhhhhccCcchHHHhcCCcccc-hHHH--------
Confidence 22223322221000 0 011111 22334 56666666666533222 23445566662 2222
Q ss_pred cccCCCCCCcccEEEecCccccccccccc--ccccccceEeeecCCCCC
Q 003154 751 LACGSDGFPKLKVLHLKSMIWLEEWTMGN--EAMPKLECLVVNPCAYLK 797 (843)
Q Consensus 751 ~~~~~~~f~~L~~L~L~~~~~l~~l~~~~--~~lp~L~~L~l~~c~~l~ 797 (843)
.....+.+|+.|.+..|...+.-.... ..+.+++.+.+.+|+...
T Consensus 395 --~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 395 --LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred --HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 111123337888888776554321111 116677788888887654
No 202
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00075 Score=67.59 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=81.4
Q ss_pred cCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccc--hhhhcccccccc
Q 003154 538 MFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTA--DDIWKLNKLRHL 615 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L 615 (843)
.+.+.+-|++.||.+..+. -+.+++.|+.|.|+-|.|+.|.+ +..|++|+.|.|+.|.|..+- ..+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3556788899999988653 34589999999999999999976 479999999999999998883 458899999999
Q ss_pred cccccccCCCCCC--------CCCCcccccccccc
Q 003154 616 NFGLITLPAHPGK--------YCSSLENLNFISAL 642 (843)
Q Consensus 616 ~L~~~~l~~~~~~--------~l~~L~~L~~~~~~ 642 (843)
-|..|...+...+ -+++|+.|+...+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 9888776554222 67788888765553
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.17 E-value=0.0083 Score=58.64 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEE
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWV 234 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 234 (843)
...+|.+.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 566566666665
No 204
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.046 Score=62.24 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=50.8
Q ss_pred CCCCceecchHHHHHHHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHH
Q 003154 172 NRDNDIVGLDDKMEELLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDS 244 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 244 (843)
..+.+=+|+++-+++|++++.-+ ..+-++++.+|++|||||.+|+.|+. .....|- -++|+.-.|+.+
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAe 479 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAE 479 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHh
Confidence 34556689999999999998643 44678999999999999999999998 5555552 234555445444
No 205
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.14 E-value=0.018 Score=66.15 Aligned_cols=99 Identities=9% Similarity=0.159 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
...+.|+|..|+|||.|++.+++ .....+ -.+++++ ..++..++...+.... . ..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~~-------------~--~~ 370 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDGK-------------G--DS 370 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhcc-------------H--HH
Confidence 34589999999999999999999 444433 2345554 3444455554443210 1 23
Q ss_pred HHHHhCCCeEEEEEcCCCCc---hhhH-HHHHhcCC-CCCCcEEEEEecc
Q 003154 276 LHGYLMSKRYLIVLDDVWTN---DVWE-FIQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 276 l~~~l~~kr~LlVlDdvw~~---~~~~-~l~~~~~~-~~~gs~iiiTtR~ 320 (843)
+++.+++- =+|||||+... +.|+ .+...+.. ...|..|||||+.
T Consensus 371 f~~~y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 371 FRRRYREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHHHhhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33444332 47888999754 2332 23332221 1235678888875
No 206
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.045 Score=63.79 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=38.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999987653 2355678999999999999988773
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.023 Score=60.98 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=27.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV 236 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (843)
.-+.++|..|+|||+||..+++. +...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 66999999999999999999994 3322234666654
No 208
>PRK07667 uridine kinase; Provisional
Probab=96.09 E-value=0.007 Score=60.11 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+.|.+.+........+|||.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777777666679999999999999999999987
No 209
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.07 E-value=0.016 Score=67.39 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=41.4
Q ss_pred CCCCceecchHHHHHHHHHHHcCC---CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 172 NRDNDIVGLDDKMEELLDHLIEGP---PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..-.+++|-+..++++..++.... ...+++.++|.+|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344679999999999999987642 23467999999999999999999983
No 210
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.07 Score=58.33 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-.+++|-+..++.+.+.+..+. -...+-++|..|+||||+|..+.+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999888764 234688999999999999987766
No 211
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0051 Score=56.91 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc-CCe
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-FDC 230 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~ 230 (843)
.--|+|.||+|+||||+++.+.+ ..+.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 34689999999999999999998 44433 654
No 212
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.03 E-value=0.0066 Score=68.27 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=39.6
Q ss_pred ceecchHHHHHHHHHHHc----CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 176 DIVGLDDKMEELLDHLIE----GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+++|.++.+++|++.|.. -+.+-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999932 344568999999999999999999998
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.057 Score=58.54 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=74.1
Q ss_pred ceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-------------------cCCeeEEEEe
Q 003154 176 DIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-------------------YFDCKAWVPV 236 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~ 236 (843)
.++|-+....++..+..........+-++|.+|+||||+|..+.+.-.-.. ..+-+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467778888888888885543344689999999999999988887411111 1123344444
Q ss_pred CCCCC---hHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCC
Q 003154 237 SILYQ---PDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNG 311 (843)
Q Consensus 237 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~g 311 (843)
|.... ..+..+++.+...... ..++.-++++|++... +.-..+...+......
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~----------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP----------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC----------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 43333 1222222222222110 0256788999999765 3455555555555667
Q ss_pred cEEEEEecc
Q 003154 312 SRVLTTVSN 320 (843)
Q Consensus 312 s~iiiTtR~ 320 (843)
+++|++|..
T Consensus 140 ~~~il~~n~ 148 (325)
T COG0470 140 TRFILITND 148 (325)
T ss_pred eEEEEEcCC
Confidence 888888874
No 214
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0044 Score=62.15 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=60.4
Q ss_pred HhccCCcccEEEcCCC--CCC-CCchhccCCCCccEEEccCCCCc---ccchhHhhCCccCcEEeCCCCcCcccc----h
Q 003154 535 ICKMFKFLRVLDLGSL--FLD-QYPAGIENLSRLRYLKLNIPSLK---SLPSSLLSNLLNLYTLDMPSSYIDHTA----D 604 (843)
Q Consensus 535 ~~~~~~~LrvL~L~~~--~~~-~lp~~i~~L~~Lr~L~L~~~~i~---~lp~~i~~~L~~L~~L~L~~~~l~~lp----~ 604 (843)
-|..+++|+.|+++.| ++. .++....++++|++|++++|+|. ++++ +.++.+|.+||+.+|....+- .
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCccccccHHHH
Confidence 3567889999999999 433 56656667799999999999876 4444 278999999999999766652 2
Q ss_pred hhhccccccccc
Q 003154 605 DIWKLNKLRHLN 616 (843)
Q Consensus 605 ~i~~L~~L~~L~ 616 (843)
.+.-+++|.+|+
T Consensus 138 vf~ll~~L~~LD 149 (260)
T KOG2739|consen 138 VFLLLPSLKYLD 149 (260)
T ss_pred HHHHhhhhcccc
Confidence 255677777777
No 215
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.01 E-value=0.013 Score=54.95 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999985
No 216
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.99 E-value=0.036 Score=65.01 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=37.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997653 245567899999999999999876
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.95 E-value=0.0041 Score=60.66 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEE
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVP 235 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (843)
..-+.++|..|+|||.||..+.+. -+...+ .+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEee
Confidence 456899999999999999999884 222223 355554
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.015 Score=60.28 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=46.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHL 276 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 276 (843)
+..-+.++|.+|+|||.||.++.+. +...=-.+.+++ ..++..++....... ... ..|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~~------------~~~--~~l 161 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDEG------------RLE--EKL 161 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcC------------chH--HHH
Confidence 4667899999999999999999994 443222345543 445556655554421 111 233
Q ss_pred HHHhCCCeEEEEEcCCCCc
Q 003154 277 HGYLMSKRYLIVLDDVWTN 295 (843)
Q Consensus 277 ~~~l~~kr~LlVlDdvw~~ 295 (843)
.+.++ +-=||||||+-..
T Consensus 162 ~~~l~-~~dlLIiDDlG~~ 179 (254)
T COG1484 162 LRELK-KVDLLIIDDIGYE 179 (254)
T ss_pred HHHhh-cCCEEEEecccCc
Confidence 33222 2248899999653
No 219
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.91 E-value=0.1 Score=50.07 Aligned_cols=118 Identities=11% Similarity=0.072 Sum_probs=67.8
Q ss_pred cchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc------------------cCCeeEEEEeCCCC
Q 003154 179 GLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH------------------YFDCKAWVPVSILY 240 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~F~~~~wv~~s~~~ 240 (843)
|-+...+.+.+.+..+. -...+-++|..|+||+|+|..+.+.---.. ...-..|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44566677777776543 345678999999999999887766311111 11122333222110
Q ss_pred ChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhC-----CCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcE
Q 003154 241 QPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM-----SKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSR 313 (843)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~ 313 (843)
.....++. +.+.+.+. +++=.+|+||+... +.+..+...+.....+++
T Consensus 80 ----------------------~~i~i~~i---r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 80 ----------------------KSIKIDQI---REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp ----------------------SSBSHHHH---HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEE
T ss_pred ----------------------chhhHHHH---HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEE
Confidence 01122222 22233322 35668889999754 677888877776667899
Q ss_pred EEEEecchh
Q 003154 314 VLTTVSNIE 322 (843)
Q Consensus 314 iiiTtR~~~ 322 (843)
+|++|++.+
T Consensus 135 fiL~t~~~~ 143 (162)
T PF13177_consen 135 FILITNNPS 143 (162)
T ss_dssp EEEEES-GG
T ss_pred EEEEECChH
Confidence 999998765
No 220
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.077 Score=62.18 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=74.8
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.+++|.+..++.|..++..+. -...+-++|..|+||||+|+.+++.--.. .++.. ....+...+..+.|.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHhcCCC
Confidence 478999999999999988753 23467789999999999999998742111 11100 0112222233333322221
Q ss_pred CCC-CCccccccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 255 PSS-KLSEVMEDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 255 ~~~-~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
... ..........+++. +.+ +.+ .+++-++|+|++... +.++.|...+........+|++|.+
T Consensus 90 ~D~~ei~~~~~~~vd~IR--eii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIR--ELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred ccEEEEeccccCCHHHHH--HHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 100 00000111222332 222 222 245668899999754 5677787777654445666655544
No 221
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.015 Score=68.17 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=70.1
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccC---CeeEEEEeCCCCChH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF---DCKAWVPVSILYQPD 243 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~ 243 (843)
...++|-|+.++.+.+.+... ...+.+.-.+|+.|||||.||+.+.. .-| +..+-+..|+- ..+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy-~Ek 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEY-MEK 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHH-HHH
Confidence 457999999999999988642 33567888899999999999998876 234 22233222221 111
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeE-EEEEcCCCCc--hhhHHHHHhcCCC
Q 003154 244 SLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRY-LIVLDDVWTN--DVWEFIQEILPDN 308 (843)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~--~~~~~l~~~~~~~ 308 (843)
..+.+-++.+.+- +.-... -.|-+.++.+.| +|.||+|... +-.+-+...+.++
T Consensus 564 ---HsVSrLIGaPPGY--VGyeeG------G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 ---HSVSRLIGAPPGY--VGYEEG------GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHHhCCCCCC--ceeccc------cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1122222222110 111111 344456667777 7778999865 4666666666643
No 222
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.86 E-value=0.048 Score=62.77 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.8
Q ss_pred CceecchHHHHHHHHHHH---cC-------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLI---EG-------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+..++++.+++. .. ....+=+-++|.+|.|||+||+.+++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 468898888777665543 21 122445888999999999999999984
No 223
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.1 Score=60.41 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=39.0
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999998654 3456889999999999999999874
No 224
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.78 E-value=0.046 Score=55.95 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 195 PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 195 ~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+..+|+|.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999987
No 225
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.77 E-value=0.024 Score=56.51 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=60.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
.+|.|+|..|.||||++..+.. .........+++--.. ++.... ...++.+ .+ . ..+..... +.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q----~~---v-g~~~~~~~--~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHES-KRSLINQ----RE---V-GLDTLSFE--NALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccC-ccceeee----cc---c-CCCccCHH--HHHH
Confidence 4789999999999999998776 3433444444432221 111000 0001100 00 0 11223445 6677
Q ss_pred HHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 278 GYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
..+....=.|++|.+.+.+.+..+..... .|-.|+.|+-..++
T Consensus 69 ~aLr~~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~ 111 (198)
T cd01131 69 AALRQDPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSA 111 (198)
T ss_pred HHhcCCcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcH
Confidence 77776677999999988776655444332 35557777655443
No 226
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.76 E-value=0.049 Score=55.27 Aligned_cols=51 Identities=20% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQ 241 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 241 (843)
.+|..+=..-.++.|.|.+|+||||+|.+++.. ....=..++|++....+.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 334334345689999999999999999998873 333334577887665554
No 227
>PRK08233 hypothetical protein; Provisional
Probab=95.73 E-value=0.03 Score=54.88 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 228
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.03 Score=61.06 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=70.2
Q ss_pred CCCceecchHHH-HHHHHHHH-cCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHH
Q 003154 173 RDNDIVGLDDKM-EELLDHLI-EGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 173 ~~~~~vGr~~~~-~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 250 (843)
-+.-++|-.... -.+...+. .++.....+-|||..|.|||.|++++.+ ...........++++ .+....+++
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v 159 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFV 159 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHH
Confidence 344556644332 22222232 2333578899999999999999999999 566666543334433 233344444
Q ss_pred HHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhhH-HHHHhcCC-CCCCcEEEEEecc
Q 003154 251 KFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVWE-FIQEILPD-NLNGSRVLTTVSN 320 (843)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~~-~l~~~~~~-~~~gs~iiiTtR~ 320 (843)
..+.... . +.+++.. .-=++++||++-. +.|+ .+...+.. ...|-.||+|++.
T Consensus 160 ~a~~~~~-------------~--~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 160 KALRDNE-------------M--EKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred HHHHhhh-------------H--HHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4443211 1 5566666 3337888999753 2222 23333331 1234489999864
No 229
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.13 Score=59.71 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=38.0
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+...+.+.+++..+. -...+-++|..|.||||+|+.+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998754 245567899999999999998876
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.71 E-value=0.079 Score=55.37 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHH
Q 003154 182 DKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLL 246 (843)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 246 (843)
.-++++..++..+ .-|-+.|.+|+|||+||+.+.. .... ..+.++.+...+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3345555555543 2456899999999999999986 2322 23455555554444443
No 231
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.71 E-value=0.022 Score=68.52 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=40.8
Q ss_pred CCCCceecchHHHHHHHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 172 NRDNDIVGLDDKMEELLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-+.+.+|.+.-+++|+++|... ...-.++.++|.+|+||||+|+.+..
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999988741 23456899999999999999999997
No 232
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.70 E-value=0.023 Score=68.72 Aligned_cols=47 Identities=23% Similarity=0.211 Sum_probs=37.4
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|.+..+++|.+++... -...+-|.++|.+|+||||||+.+++.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 45889999999998877431 123456889999999999999999983
No 233
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.036 Score=62.93 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=59.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC--CChHHHHHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL--YQPDSLLDNIIK 251 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~ 251 (843)
+.+++--...+++..+....+--...-|-|.|..|+|||+||+++++... +.+.-++.+|+.|.- -..+++++.
T Consensus 407 e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~--- 482 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF--- 482 (952)
T ss_pred CCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH---
Confidence 34455444444444443333333456788999999999999999999533 444455666665542 123333321
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCC
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVW 293 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 293 (843)
+. ..+.+.+....-+|||||+.
T Consensus 483 ------------------l~--~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 483 ------------------LN--NVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred ------------------HH--HHHHHHHhhCCcEEEEcchh
Confidence 11 44555666788999999995
No 234
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.61 E-value=0.023 Score=59.05 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=44.7
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC----CeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF----DCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
+.|.++=..-.++=|+|.+|+|||+|+.+++-...+.... ..++|++....|+..++. +|++...
T Consensus 29 ~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 29 ELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred HhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 3343332345789999999999999998876543332221 359999999999988875 5676654
No 235
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.61 E-value=0.027 Score=55.22 Aligned_cols=45 Identities=27% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.++||-++.++++.-+-.+++ .+-+.|.||+|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 3579999999999877776665 88899999999999997766665
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.60 E-value=0.021 Score=53.23 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=33.5
Q ss_pred ecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 178 VGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 178 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
||....++++.+.+..-......|-|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57788888888877654334566789999999999999999884
No 237
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.011 Score=60.07 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=40.8
Q ss_pred CCceecchHHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+|||.+.-++++.=++... +..+--+-++|.+|.||||||.-+.+.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 357999999999988887653 345778999999999999999999994
No 238
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.097 Score=57.60 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=37.3
Q ss_pred CceecchHH---HHHHHHHHHcCC-------CCceEEEEEcCCCChHHHHHHHHhcCcc
Q 003154 175 NDIVGLDDK---MEELLDHLIEGP-------PQLSVVAVLDSVGLDKTAFAAEAYNSNY 223 (843)
Q Consensus 175 ~~~vGr~~~---~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 223 (843)
.++-|.|+. +++|+++|.++. .=++=|-.+|.+|.|||-||++|+-...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 456677664 667788888752 2356688999999999999999998543
No 239
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.57 E-value=0.1 Score=56.66 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHcCC-CCceEEEEEcCCCChHHHHHHHHhcCcccccc----C---CeeEEEEeCCCCChHHHHHHHHHH
Q 003154 181 DDKMEELLDHLIEGP-PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY----F---DCKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 181 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F---~~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
+.-.+.+.+.+...+ ....+|||.|.=|+||||+.+.+.+. .+.. + ..-.|-.-+..--...++..|..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~--L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE--LKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH--HhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 445677888887764 67899999999999999999999884 4433 1 112333333222244555566555
Q ss_pred hC
Q 003154 253 LM 254 (843)
Q Consensus 253 l~ 254 (843)
+.
T Consensus 80 l~ 81 (325)
T PF07693_consen 80 LE 81 (325)
T ss_pred HH
Confidence 54
No 240
>PRK04296 thymidine kinase; Provisional
Probab=95.55 E-value=0.02 Score=56.65 Aligned_cols=114 Identities=8% Similarity=-0.062 Sum_probs=62.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHG 278 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (843)
.++.|+|..|.||||+|..... +...+-..++.+. ..++.+.....++.+++..... ......+++. ..+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~--~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIF--ELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc--eEeCChHHHH--HHHHh
Confidence 4677899999999999988887 3433333334331 1122222233455555432110 1112334444 44444
Q ss_pred HhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 279 YLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 279 ~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
..++--+||+|.+.-. ++...+...+ ...|-.||+|.++.+.
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 3334458999999543 2233333332 2347899999998553
No 241
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.53 E-value=0.043 Score=59.21 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccC----CeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF----DCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
++|..+=..-.++-|+|.+|+|||+++.+++-.......+ ..++||+....|+..++. ++++.++
T Consensus 93 ~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 93 ELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred HHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 3444443457889999999999999999887642222111 479999999988887765 4455554
No 242
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.52 E-value=0.15 Score=53.25 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCC--CCCC-
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMP--SSKL- 259 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~~- 259 (843)
..+.++..|... .+..-++|+|..|.|||||.+.+... +. .....+++.- +.....+-..++...... +...
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 344555555532 23578999999999999999999983 32 2233344321 111111111333333322 1110
Q ss_pred ccccccchHHHHHHHHHHHHhC-CCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhhh
Q 003154 260 SEVMEDRDYEMRKIIHLHGYLM-SKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~ 325 (843)
......+...-. ..+...+. ...=++++|.+-..+.+..+...+. .|..||+||-+..+..
T Consensus 172 ~r~~v~~~~~k~--~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGCPKA--EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccchHH--HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 001111111111 33344443 5778899999987777777766653 4778999998776644
No 243
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.51 E-value=0.13 Score=51.20 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCCCceecchHHHHHHHHHHHc--CCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHH
Q 003154 172 NRDNDIVGLDDKMEELLDHLIE--GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNI 249 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 249 (843)
++-..++|.|..++.+++=-.. .+....-|-.||.-|.||+.|++++.+ .+....-. -|.|++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k----------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK----------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH-----------
Confidence 4456789999999888763221 122345578899999999999999998 44443322 222221
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCC---chhhHHHHHhcCCC---CCCcEEEEEecch
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWT---NDVWEFIQEILPDN---LNGSRVLTTVSNI 321 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~---~~~~~~l~~~~~~~---~~gs~iiiTtR~~ 321 (843)
.+...+ ..|.+.|+ ..||.|..||..= .+.+..++..+..+ .+...++..|.++
T Consensus 122 ---------------~dl~~L---p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 ---------------EDLATL---PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ---------------HHHhhH---HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 111222 34555554 5799999999963 35788888888743 2333444444443
No 244
>PRK13695 putative NTPase; Provisional
Probab=95.51 E-value=0.015 Score=56.76 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 245
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.47 E-value=0.14 Score=48.56 Aligned_cols=120 Identities=14% Similarity=0.012 Sum_probs=61.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC---CCChHHHHHHHHHHhCC-CCCCc-ccc-ccchHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI---LYQPDSLLDNIIKFLMP-SSKLS-EVM-EDRDYEMRK 272 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~~-~~~~~-~~~-~~~~~~~~~ 272 (843)
.+|-|++-.|.||||+|....- +...+=-.+.++-.-+ ......+++.+- .+.- ..... .+. ....+....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4688888899999999977766 3332222334433222 233333333330 0000 00000 000 111111111
Q ss_pred H----HHHHHHhCC-CeEEEEEcCCCCc-----hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 273 I----IHLHGYLMS-KRYLIVLDDVWTN-----DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 273 ~----~~l~~~l~~-kr~LlVlDdvw~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
+ +..++.+.. +-=|||||++-.. -+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 334444444 3459999998543 34556666666556678999999975
No 246
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.46 E-value=0.055 Score=58.50 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=38.8
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.+..+.++.+.+..-...-.-|-|+|-.|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999998876444455688999999999999999986
No 247
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.44 E-value=0.071 Score=57.52 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=46.7
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----cCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH----YFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
.+|..+=..-.++-|+|.+|+|||+|+..++-...... .=..++|++....|+.+++. +|++.++.
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 34444435578888999999999999988775322211 11269999999999988864 56776654
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.44 E-value=0.03 Score=55.50 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=34.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLM 254 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~ 254 (843)
++||.++|..|+||||.+.+++. +.+..=..+..++... .....+-++..++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 47999999999999997777666 3333333466666542 2233444555566655
No 249
>PRK04040 adenylate kinase; Provisional
Probab=95.44 E-value=0.03 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 250
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.42 E-value=0.11 Score=50.49 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC---cccccc---CC--eeEEEEeCCCCChHHHHHHHHHHhCCCCC-Cc-cccccch
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS---NYVKHY---FD--CKAWVPVSILYQPDSLLDNIIKFLMPSSK-LS-EVMEDRD 267 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~---~~~~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~-~~~~~~~ 267 (843)
-.+++|+|..|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.++.... .. .....+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999998642 111111 11 12232 22 455666654321 11 1233444
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEEcCCCCc---hhhHHHHHhcCC-CCCCcEEEEEecchhhhh
Q 003154 268 YEMRKIIHLHGYLMS-KRYLIVLDDVWTN---DVWEFIQEILPD-NLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 268 ~~~~~~~~l~~~l~~-kr~LlVlDdvw~~---~~~~~l~~~~~~-~~~gs~iiiTtR~~~v~~ 325 (843)
.+.+|....+..+.+ -.=++++|+--.. ...+.+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 444444444444444 0557777887433 333333333332 124677888888876544
No 251
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.39 E-value=0.051 Score=55.40 Aligned_cols=124 Identities=10% Similarity=0.024 Sum_probs=70.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-----CCChHHHHHHHHHHhCCCCCCcc--ccccchHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-----LYQPDSLLDNIIKFLMPSSKLSE--VMEDRDYEM 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~ 270 (843)
-.++|+||..|.||||+++.+.. .-..-.+.++..-.+ .....+-..++++.++...+.-. ....+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 56899999999999999999987 333333444443211 22233445566666665332110 123344455
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCCchhh---HHHHHhcC--CCCCCcEEEEEecchhhhh
Q 003154 271 RKIIHLHGYLMSKRYLIVLDDVWTNDVW---EFIQEILP--DNLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 271 ~~~~~l~~~l~~kr~LlVlDdvw~~~~~---~~l~~~~~--~~~~gs~iiiTtR~~~v~~ 325 (843)
+| -.+.+.|.-+.=+||.|.--+.-+. .++...+. ....|-..+..|-+-.|+.
T Consensus 116 QR-i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 116 QR-IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hh-HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 42 2466777888899999987544211 22222222 1123556677777766665
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.33 E-value=0.07 Score=52.28 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEE---eCCCCChHHHHH------HHHHHhCCCCCCc-cccccch
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVP---VSILYQPDSLLD------NIIKFLMPSSKLS-EVMEDRD 267 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~~~-~~~~~~~ 267 (843)
-.+++|+|..|.|||||++.++.. .....+.+++. +. ..+...... ++++.++...... .....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999973 33344544442 22 112222211 2444544321100 0223344
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCc---hhhHHHHHhcCCC-CC-CcEEEEEecchhh
Q 003154 268 YEMRKIIHLHGYLMSKRYLIVLDDVWTN---DVWEFIQEILPDN-LN-GSRVLTTVSNIEI 323 (843)
Q Consensus 268 ~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~~~l~~~~~~~-~~-gs~iiiTtR~~~v 323 (843)
.+.+|. .+.+.+....-++++|+--.. +..+.+...+..- .. |..||++|.+...
T Consensus 101 G~~qrl-~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRV-LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHH-HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 444433 344555566678888987533 3333443333321 12 6678888877654
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.31 E-value=0.052 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 254
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.029 Score=55.54 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.+|||-|.+|.||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999998
No 255
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.11 Score=52.86 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcc-----cc------ccC---CeeEEEEe----CCCC--ChH---------------
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNY-----VK------HYF---DCKAWVPV----SILY--QPD--------------- 243 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~----s~~~--~~~--------------- 243 (843)
.+++|+|..|.|||||.+.+..--+ +. ..+ ..+.||.= ...| ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987210 10 001 13455431 1111 111
Q ss_pred -------HHHHHHHHHhCCCCC-CccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc------hhhHHHHHhcCCCC
Q 003154 244 -------SLLDNIIKFLMPSSK-LSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN------DVWEFIQEILPDNL 309 (843)
Q Consensus 244 -------~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~~l~~~~~~~~ 309 (843)
+...+.++.++...- ...+...+-.+.+| -.|.+.|..+.=|+|||.=-.. ...-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QR-V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQR-VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHH-HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 334445555554211 01145555566663 2566778888889999975432 3444444444443
Q ss_pred CCcEEEEEecchhhhh
Q 003154 310 NGSRVLTTVSNIEILT 325 (843)
Q Consensus 310 ~gs~iiiTtR~~~v~~ 325 (843)
|..|+++|-+-+...
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 889999998876554
No 256
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.26 E-value=0.062 Score=59.55 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCC-------CCCccccc--cchH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPS-------SKLSEVME--DRDY 268 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~--~~~~ 268 (843)
-..++|+|..|+|||||++.+... ......+++..-.+..++.++....+...... .+.+.... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 457999999999999999999863 22233445544334445555554444433211 11000000 0001
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 269 EMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 269 ~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
.+..|+.++. +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd--~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccchHH
Confidence 1111244443 58999999999943
No 257
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.23 E-value=0.059 Score=56.89 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
...+|+|+|.+|+||||++..+......+..-..+..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35799999999999999998887732222111245555544
No 258
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.28 Score=54.92 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
-+++.++|.+|+||||++..+.........-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4699999999999999888776521101222346666653
No 259
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.049 Score=60.86 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=64.0
Q ss_pred CceecchHHHHHHHHHHHcC----------CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHH
Q 003154 175 NDIVGLDDKMEELLDHLIEG----------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDS 244 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 244 (843)
.++-|.|..+.++.+++..- -...+=|-++|.+|.|||.||+++.+. ..-.| +.++-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 46778999998888876541 124566789999999999999999994 44333 333322
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 245 LLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 245 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
+|+.+.. ..+++.+. +...+....-.+++++|+++-
T Consensus 258 ---eivSGvS---------GESEkkiR--elF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS---------GESEKKIR--ELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC---------cccHHHHH--HHHHHHhccCCeEEEeecccc
Confidence 3333333 33445555 566666677899999999964
No 260
>PRK06547 hypothetical protein; Provisional
Probab=95.20 E-value=0.024 Score=54.88 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+...+.. ....+|+|.|..|+||||+|+.+.+.
T Consensus 6 ~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 34889999999999999999999873
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.23 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999998876
No 262
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.19 E-value=0.075 Score=63.83 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=39.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++|....++++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 47999999999998877654334557889999999999999999874
No 263
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.17 E-value=0.012 Score=53.89 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 003154 201 VAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~ 221 (843)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999883
No 264
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.16 E-value=0.065 Score=57.02 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-CccccccchHHHHH
Q 003154 194 GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-LSEVMEDRDYEMRK 272 (843)
Q Consensus 194 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~ 272 (843)
+=+.-+++-|+|.+|+||||||.++... ....=..++|++....++.. .+++++...+ .--....+.++..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l- 122 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQAL- 122 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHH-
Confidence 3345689999999999999999888763 33333557888877666653 3455543211 0001222334444
Q ss_pred HHHHHHHhC-CCeEEEEEcCCC
Q 003154 273 IIHLHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 273 ~~~l~~~l~-~kr~LlVlDdvw 293 (843)
..+...++ +.--+||+|-|-
T Consensus 123 -~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 123 -EIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred -HHHHHHhhccCCcEEEEcchh
Confidence 55555553 456689999984
No 265
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.14 E-value=0.12 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 266
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.14 E-value=0.098 Score=54.80 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
.+.++|+++|.+|+||||.+..++.. ....=..+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC
Confidence 34789999999999999988888763 33322345556544
No 267
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.13 E-value=0.064 Score=54.85 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHhcccccCCchhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccCChhHHHHHHHHHHH
Q 003154 3 INLGLFSERLRRLLAGEEGTLPDAAKEGIQNLHTEIEVVTSWLRDYDYDLAWLLMQIGAAAEDQIHSTDLKAIMKEINRF 82 (843)
Q Consensus 3 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~ 82 (843)
+-|..+++++-++.... ...+.-++.+++-++.+++.+|.|+++.-. .+....+. .+.+..++...
T Consensus 296 GyVdFlL~NLkdfq~ry-sdSlaflKnQiqvIQ~elesLqpFLk~V~e------------e~~nkh~~-~ed~a~~ii~k 361 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRY-SDSLAFLKNQIQVIQTELESLQPFLKHVVE------------EPHNKHDT-NEDCATQIIRK 361 (402)
T ss_pred cHHHHHHhhHHHHhccc-cchHHHHHHHHHHHHHHHHHhhHHHHHHHh------------ccchhhhh-hhhHHHHHHHH
Confidence 45677888888888887 777888999999999999999999999854 01233444 88999999999
Q ss_pred hhhhhhHHhhhhcccccccccCCCc---hHHHHHHHHHHHHHH
Q 003154 83 AYESEKVIDTFIIPTIMEQQKSGSS---SKEIRDALLGLQRKI 122 (843)
Q Consensus 83 ~~d~ed~ld~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~ 122 (843)
||++|.++|.+.....- .++. ...+...|+-+++++
T Consensus 362 AyevEYVVDaCi~k~~P----~Wcl~~WL~dIieei~~ik~~i 400 (402)
T PF12061_consen 362 AYEVEYVVDACISKSVP----HWCLERWLLDIIEEITCIKAKI 400 (402)
T ss_pred HhheeeeeehhhcCCCc----HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988543321 1222 344555555555554
No 268
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.023 Score=64.85 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=44.3
Q ss_pred CCCCceecchHHHHHHHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 172 NRDNDIVGLDDKMEELLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 172 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
..+.+=+|.++-+++|+++|.-. .-.-++++.||++|||||.|++.++. .....|
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 33456689999999999998642 23457999999999999999999998 566555
No 269
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.08 E-value=0.036 Score=55.59 Aligned_cols=88 Identities=10% Similarity=0.152 Sum_probs=52.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-CChHHHHHHHHHHhCCCCCCccccccch----------
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-YQPDSLLDNIIKFLMPSSKLSEVMEDRD---------- 267 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~---------- 267 (843)
.-++|.|.+|+|||+|+..+.+.. .=+.++++.+++. ..+.++.+++...=......--....+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 578999999999999999998842 2345578888765 3455666655332000000000001110
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCC
Q 003154 268 YEMRKIIHLHGYLMSKRYLIVLDDV 292 (843)
Q Consensus 268 ~~~~~~~~l~~~l~~kr~LlVlDdv 292 (843)
-.+..|+.++. ++|.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 11222255555 799999999999
No 270
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.19 Score=54.36 Aligned_cols=136 Identities=10% Similarity=0.018 Sum_probs=68.3
Q ss_pred ceec-chHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 176 DIVG-LDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 176 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.++| -+..++.+.+.+..+. -....-++|..|+||||+|+.+.+..--...... ..++....-+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~-------~~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV-------EPCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC-------CCCCcCHHHHHHhcCCC
Confidence 3566 5666777777776543 3456689999999999999888653111110100 00111111111110000
Q ss_pred CCCC--CccccccchHHHHHHHHHHHH-----hCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 255 PSSK--LSEVMEDRDYEMRKIIHLHGY-----LMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 255 ~~~~--~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
..-. .+.-.....+++. + +.+. ..+++=++|+|++... +..+.+...+.....++.+|++|.+..
T Consensus 78 pD~~~i~~~~~~i~id~ir--~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR--Y-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred CCEEEeccccccCCHHHHH--H-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 0000 0000111223332 2 2222 2245556888998654 456677777776666788887876643
No 271
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.06 E-value=0.05 Score=59.37 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=52.0
Q ss_pred CCceecchHHHHHHHHHHHcC------------CCCceEEEEEcCCCChHHHHHHHHhcCccccccC---CeeEEEEeCC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG------------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF---DCKAWVPVSI 238 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~ 238 (843)
+..++|.++.+..+.-.+... +...+-|.++|.+|+||||+|+.+.. .....| |..-++..+.
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCc
Confidence 456899999999987666542 11246788999999999999999998 344444 3322332222
Q ss_pred -CCChHHHHHHHHHHh
Q 003154 239 -LYQPDSLLDNIIKFL 253 (843)
Q Consensus 239 -~~~~~~~~~~i~~~l 253 (843)
..+..++++.++...
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 235667776666654
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.02 E-value=0.12 Score=55.37 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=46.4
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----cCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH----YFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
++|..+=..-.++-|+|.+|+|||+|+.+++-...... .=..++|++....|+.+++. ++++.++.
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 34444434568899999999999999987764222211 11468999999999988875 46676654
No 273
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.02 E-value=0.088 Score=56.64 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc----CCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY----FDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.+|..+=..-.++-|+|.+|+||||++.+++-....... =..++||+....|+..++. ++++.++
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 344444345788999999999999999988764322111 1279999999888887764 4555544
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.01 E-value=0.072 Score=56.73 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=56.0
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-CccccccchHHHHH
Q 003154 194 GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-LSEVMEDRDYEMRK 272 (843)
Q Consensus 194 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~ 272 (843)
+=+.-+++-|+|.+|+||||||.+++-. ....-..++|++....++.. .+++++...+ .--....+.++..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l- 122 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQAL- 122 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHH-
Confidence 3345678889999999999999988763 33344568899887776653 3444443110 0001222344444
Q ss_pred HHHHHHHhC-CCeEEEEEcCCC
Q 003154 273 IIHLHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 273 ~~~l~~~l~-~kr~LlVlDdvw 293 (843)
..+...++ +.--+||+|-|-
T Consensus 123 -~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 123 -EIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred -HHHHHHHhccCCCEEEEcchH
Confidence 55555554 455689999974
No 275
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.99 E-value=0.11 Score=55.65 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----cCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH----YFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
+-.+|..+=..-.++.|+|.+|+|||||+..++....... .-..++|++....++..++ .++++.++.
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3344444445678999999999999999998875322211 1235799998888888764 445665543
No 276
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.98 E-value=0.017 Score=57.53 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=43.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccc-cCC---eeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKH-YFD---CKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~---~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
||+|.|.+|+||||+|+.+.. .... .+. ....+.....+........ -...............+.+.+. +.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~--~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLK--ED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHH--HH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHH--HH
Confidence 799999999999999999987 3332 222 2333333332222222221 1111111000012455666777 77
Q ss_pred HHHHhCCCeEEE
Q 003154 276 LHGYLMSKRYLI 287 (843)
Q Consensus 276 l~~~l~~kr~Ll 287 (843)
|....+++.+-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 776666665443
No 277
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.081 Score=58.14 Aligned_cols=102 Identities=22% Similarity=0.169 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHH-HH-H
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMR-KI-I 274 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~-~ 274 (843)
+..-+.+.|.+|+|||+||..++. ...|+.+=-++. ++ +-..++..-. .+ .
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSp------e~-----------------miG~sEsaKc~~i~k 589 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISP------ED-----------------MIGLSESAKCAHIKK 589 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeCh------HH-----------------ccCccHHHHHHHHHH
Confidence 466677789999999999999987 566775443321 11 1112222222 00 2
Q ss_pred HHHHHhCCCeEEEEEcCCCCchhhHHHHHh------------cCCC-CCCcE--EEEEecchhhhh
Q 003154 275 HLHGYLMSKRYLIVLDDVWTNDVWEFIQEI------------LPDN-LNGSR--VLTTVSNIEILT 325 (843)
Q Consensus 275 ~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~------------~~~~-~~gs~--iiiTtR~~~v~~ 325 (843)
......+..--.||+||+...-+|-.++.. +... .+|-| |+-||-...|.+
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 333344556678999999776666444332 2211 22334 455666667766
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.98 E-value=0.11 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999987
No 279
>PRK10867 signal recognition particle protein; Provisional
Probab=94.96 E-value=0.11 Score=57.87 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|.++|.+|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997777665
No 280
>PTZ00301 uridine kinase; Provisional
Probab=94.96 E-value=0.027 Score=56.42 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|||.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 281
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.95 E-value=0.048 Score=54.24 Aligned_cols=116 Identities=8% Similarity=0.045 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccc
Q 003154 185 EELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVME 264 (843)
Q Consensus 185 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 264 (843)
.+.+..+.... -+++.|.|.+|.||||+++.+... .... ...+.+.....-.... +.+..+.. .
T Consensus 7 ~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~-------a 70 (196)
T PF13604_consen 7 REAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE-------A 70 (196)
T ss_dssp HHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS--------E
T ss_pred HHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc-------h
Confidence 33444443333 467888999999999999998763 3332 2233333222222222 33333211 1
Q ss_pred cchHHHHHHHHHHHHh---------CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 265 DRDYEMRKIIHLHGYL---------MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 265 ~~~~~~~~~~~l~~~l---------~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
.+.. ..+...- ..++-+||+|+++.. ..+..+....+. .|+|+|+.=-..+.
T Consensus 71 ~Ti~-----~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 71 QTIH-----SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp EEHH-----HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred hhHH-----HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 1111 1111110 123359999999865 467777776654 47888877554443
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=94.95 E-value=0.27 Score=52.91 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=33.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccc-cCCeeEEEEeCCCCCh--HHHHHHHHHHhCC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFDCKAWVPVSILYQP--DSLLDNIIKFLMP 255 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~ 255 (843)
+..+|.++|++|+||||++..++.. ... .+ .++.+. ...+.. .+-++..+..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 4789999999999999988777762 322 23 233343 333332 2334455555553
No 283
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.90 E-value=0.4 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|.++|..|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 284
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.87 E-value=0.021 Score=57.56 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999873
No 285
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.86 E-value=0.087 Score=58.15 Aligned_cols=93 Identities=9% Similarity=0.057 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCC-hHHHHHHHHHHhCCCCCCccccccchHHHH-----
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQ-PDSLLDNIIKFLMPSSKLSEVMEDRDYEMR----- 271 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----- 271 (843)
-..++|+|..|+|||||++.+.+. ...+.++.+-+.+... +.++..+++..-......--....+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 467999999999999999999873 2235666676766543 445555543331111100000111110000
Q ss_pred -HHHHHHHHh--CCCeEEEEEcCCCC
Q 003154 272 -KIIHLHGYL--MSKRYLIVLDDVWT 294 (843)
Q Consensus 272 -~~~~l~~~l--~~kr~LlVlDdvw~ 294 (843)
-|..+.+++ +++++|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 002233333 58999999999943
No 286
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.84 E-value=0.11 Score=56.24 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=36.7
Q ss_pred eecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 177 IVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 177 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
++|....++++.+.+..-...-.-|-|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888888887765444566899999999999999999873
No 287
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.18 Score=54.85 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=49.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCC-CCChHHHHHHHHHHhCCCCCCccccccchHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSI-LYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKII 274 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 274 (843)
-.+++++|..|+||||++.++... ....+ ..+..++... .....+-++...+.++.... ...+..++. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~--~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQ--L 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHH--H
Confidence 468999999999999999999873 32233 3455555322 22344455555555554221 122233343 3
Q ss_pred HHHHHhCCCeEEEEEcCCCCc
Q 003154 275 HLHGYLMSKRYLIVLDDVWTN 295 (843)
Q Consensus 275 ~l~~~l~~kr~LlVlDdvw~~ 295 (843)
.+. .+.++ -+|++|..-..
T Consensus 209 ~l~-~l~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 209 ALA-ELRNK-HMVLIDTIGMS 227 (374)
T ss_pred HHH-HhcCC-CEEEEcCCCCC
Confidence 333 34454 45558888543
No 288
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.83 E-value=0.019 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 289
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.82 E-value=0.057 Score=58.96 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=52.2
Q ss_pred CCceecchHHHHHHHHHHHcC--------C----CCceEEEEEcCCCChHHHHHHHHhcCccccccC---CeeEEEEeCC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG--------P----PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF---DCKAWVPVSI 238 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~--------~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~ 238 (843)
+..++|.++.++.+..++... . ....-|.++|.+|+||||||+.+.. .....| |...|...+.
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCc
Confidence 467999999999998888541 1 1246789999999999999999988 344333 3332332221
Q ss_pred -CCChHHHHHHHHHHh
Q 003154 239 -LYQPDSLLDNIIKFL 253 (843)
Q Consensus 239 -~~~~~~~~~~i~~~l 253 (843)
..+...+.++++...
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 235566666666655
No 290
>PRK09354 recA recombinase A; Provisional
Probab=94.82 E-value=0.096 Score=56.26 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=59.2
Q ss_pred HHHH-cCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-Cccccccc
Q 003154 189 DHLI-EGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-LSEVMEDR 266 (843)
Q Consensus 189 ~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ 266 (843)
.+|. .+=+.-+++-|+|.+|+||||||.++... ....=..++|++....++.. .+++++...+ .-.....+
T Consensus 50 ~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~ 122 (349)
T PRK09354 50 IALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDT 122 (349)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCC
Confidence 3344 33345678999999999999999988763 33344568899888777753 3455543210 00012223
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEEcCCC
Q 003154 267 DYEMRKIIHLHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 267 ~~~~~~~~~l~~~l~-~kr~LlVlDdvw 293 (843)
.++.. ..+...++ ++--+||+|-|-
T Consensus 123 ~Eq~l--~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 123 GEQAL--EIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHH--HHHHHHhhcCCCCEEEEeChh
Confidence 44444 45555554 455689999984
No 291
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.80 E-value=0.21 Score=46.86 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
-.+++|+|..|.|||||++.+..- .....+.+|+.-.. .+.- ....+..+.+| -.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~~~~-------------~i~~------~~~lS~G~~~r-v~la 82 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE---LEPDEGIVTWGSTV-------------KIGY------FEQLSGGEKMR-LALA 82 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC---CCCCceEEEECCeE-------------EEEE------EccCCHHHHHH-HHHH
Confidence 468999999999999999999874 22234444442100 0000 00012222322 2334
Q ss_pred HHhCCCeEEEEEcCCCCc---hhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 278 GYLMSKRYLIVLDDVWTN---DVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
..+..+.-++++|+--.. ...+.+...+... +..||++|.+.+.+
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 445556667888987532 3334444333322 24677887765543
No 292
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.77 E-value=0.035 Score=59.24 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..+..++|||.+|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999994
No 293
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.76 E-value=0.21 Score=53.52 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=37.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+.+..+. -....-++|..|+||+++|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999987753 246888999999999998877755
No 294
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.73 E-value=0.16 Score=54.70 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=46.1
Q ss_pred HHHcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----ccCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 190 HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVK----HYFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 190 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
+|..+=..-.++=|+|.+|+|||+|+.+++-..... +.-..++|++....|+..++.+ +++.++.
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 344443456788899999999999998886432221 1124689999999999888754 6666654
No 295
>PRK06762 hypothetical protein; Provisional
Probab=94.71 E-value=0.023 Score=54.87 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 296
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.71 E-value=0.27 Score=47.44 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 297
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.71 E-value=0.034 Score=61.92 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=38.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...++||++.++.+...+..+. -|-|.|.+|+|||+||+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 4579999999999999887654 5789999999999999999873
No 298
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.70 E-value=0.1 Score=59.21 Aligned_cols=47 Identities=26% Similarity=0.259 Sum_probs=34.0
Q ss_pred CceecchHHHHHHHHHHHc--------CCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIE--------GPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|.+.-++.+.+.... +-...+-|-++|.+|.|||.+|+.+.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4677888777766653211 1123566889999999999999999983
No 299
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.69 E-value=0.14 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999987
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.68 E-value=0.16 Score=56.73 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhCC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 255 (843)
...+|.++|.+|+||||.|..++.. .+..-..+.-|+... .....+-++.++++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4789999999999999999998873 333212334444332 11223445556666543
No 301
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.66 E-value=0.14 Score=52.49 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=56.9
Q ss_pred HHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-------Cc--
Q 003154 190 HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-------LS-- 260 (843)
Q Consensus 190 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~-- 260 (843)
.|..+=..-.++.|+|.+|+||||||.++... .++ .=..++|++..+. ..++.+++ .+++-.-. ..
T Consensus 17 ~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~ 91 (234)
T PRK06067 17 KLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIF 91 (234)
T ss_pred hhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEE
Confidence 33344355789999999999999999998542 122 2246888888654 34555543 23332100 00
Q ss_pred -----c--ccccchHHHHHHHHHHHHhCC-CeEEEEEcCCC
Q 003154 261 -----E--VMEDRDYEMRKIIHLHGYLMS-KRYLIVLDDVW 293 (843)
Q Consensus 261 -----~--~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw 293 (843)
. ....+.+.+. ..+.+.+.. +.-++|+|.+-
T Consensus 92 ~~~~~~~~~~~~~~~~ll--~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 92 PLNTEGFEWNSTLANKLL--ELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eccccccccCcchHHHHH--HHHHHHHHhcCCCEEEEecHH
Confidence 0 0112234555 667777753 45589999875
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.45 Score=52.26 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccc-cC-CeeEEEEeCCCCChHH--HHHHHHHHhCCCCCCccccccchHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YF-DCKAWVPVSILYQPDS--LLDNIIKFLMPSSKLSEVMEDRDYEMRK 272 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F-~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 272 (843)
...+|.++|..|+||||.+..++....... .- ..+..+++. ++.... -++..++.++.+- ....+.+++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv----~~~~~~~~l~- 246 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPV----KAIESFKDLK- 246 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcce----EeeCcHHHHH-
Confidence 467999999999999999888876322111 11 234445544 333332 2444444444321 1222334444
Q ss_pred HHHHHHHhCCCeEEEEEcCCCC
Q 003154 273 IIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 273 ~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
..+.+. .+.-+|++|..-.
T Consensus 247 -~~L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 247 -EEITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred -HHHHHh--CCCCEEEEcCCCC
Confidence 444443 3455777888753
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.62 E-value=0.076 Score=51.07 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC--CCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI--LYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
-.+++|+|..|.|||||.+.++.- .....+.+++.-.. ..+..+..+ +.++- ....+..+.++. .
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~------~~qLS~G~~qrl-~ 92 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAM------VYQLSVGERQMV-E 92 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEE------EEecCHHHHHHH-H
Confidence 458999999999999999999873 33445555553211 111111110 01110 111333444332 3
Q ss_pred HHHHhCCCeEEEEEcCCCCc---hhhHHHHHhcCC-CCCCcEEEEEecchhh
Q 003154 276 LHGYLMSKRYLIVLDDVWTN---DVWEFIQEILPD-NLNGSRVLTTVSNIEI 323 (843)
Q Consensus 276 l~~~l~~kr~LlVlDdvw~~---~~~~~l~~~~~~-~~~gs~iiiTtR~~~v 323 (843)
+.+.+-.+.-++++|+--.. ...+.+...+.. ...|..||++|.+...
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 44445556677888987543 233333333321 1236678888887653
No 304
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.61 E-value=0.028 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-.+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 305
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.60 E-value=0.12 Score=62.54 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=36.4
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|.+..++++.+.+.-. -...+-|.++|.+|.|||++|+.+++.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46789898888888776421 123455788999999999999999984
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.57 E-value=0.27 Score=54.72 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877776
No 307
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.56 E-value=0.013 Score=35.19 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=10.3
Q ss_pred CccEEEccCCCCcccchh
Q 003154 564 RLRYLKLNIPSLKSLPSS 581 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~ 581 (843)
+|++|++++|.++.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 355666666655555555
No 308
>PRK03839 putative kinase; Provisional
Probab=94.55 E-value=0.024 Score=55.57 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 309
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.54 E-value=0.12 Score=59.70 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=41.8
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
....++|....++++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3467999999999999988775555667889999999999999999984
No 310
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.54 E-value=0.14 Score=59.71 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=40.7
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
....++|.+..++++.+.+..-......|-|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999988764434456779999999999999999974
No 311
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.53 E-value=0.052 Score=49.73 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 182 DKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
++.+++-+.|...-..-.+|.+.|.-|.||||+++.+...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555443233468999999999999999999985
No 312
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.52 E-value=0.12 Score=52.31 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 313
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.49 E-value=0.014 Score=35.03 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=11.4
Q ss_pred cCcEEeCCCCcCcccchhhh
Q 003154 588 NLYTLDMPSSYIDHTADDIW 607 (843)
Q Consensus 588 ~L~~L~L~~~~l~~lp~~i~ 607 (843)
+|++|||++|.++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666665555555544
No 314
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.47 E-value=0.15 Score=53.80 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCceec---chHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC-ccccccCCeeEEE----EeCCCC-----
Q 003154 174 DNDIVG---LDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS-NYVKHYFDCKAWV----PVSILY----- 240 (843)
Q Consensus 174 ~~~~vG---r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~-~~~~~~F~~~~wv----~~s~~~----- 240 (843)
+..+.| |..+..--+++|++++ +..|.+.|.+|.|||-||-...-. ...++.|..++-. .+++..
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCC
Confidence 334555 5666666677788776 999999999999999887654332 1223445443322 123211
Q ss_pred ----ChHHHHHHHHHH---hCCCCCCccccccchHHHHHHHHH---------HHHhCCC---eEEEEEcCCCCchhhHHH
Q 003154 241 ----QPDSLLDNIIKF---LMPSSKLSEVMEDRDYEMRKIIHL---------HGYLMSK---RYLIVLDDVWTNDVWEFI 301 (843)
Q Consensus 241 ----~~~~~~~~i~~~---l~~~~~~~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdvw~~~~~~~l 301 (843)
.+.--.+.|..- +.... ......+. ..+ ..+++|+ +-+||+|...+... .++
T Consensus 298 ~eEeKm~PWmq~i~DnLE~L~~~~------~~~~~~l~--~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-hei 368 (436)
T COG1875 298 TEEEKMGPWMQAIFDNLEVLFSPN------EPGDRALE--EILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HEL 368 (436)
T ss_pred chhhhccchHHHHHhHHHHHhccc------ccchHHHH--HHHhccceeeeeeeeecccccccceEEEehhhccCH-HHH
Confidence 011111222222 22111 11111121 111 1123343 35899999976542 234
Q ss_pred HHhcCCCCCCcEEEEEecchhh
Q 003154 302 QEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 302 ~~~~~~~~~gs~iiiTtR~~~v 323 (843)
+..+...+.||||+.|---.++
T Consensus 369 kTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 369 KTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred HHHHHhccCCCEEEEcCCHHHc
Confidence 4445556789999998765554
No 315
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.45 E-value=0.13 Score=53.11 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=77.1
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCee-EEEEeCCCCChHHHHHHHHH
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCK-AWVPVSILYQPDSLLDNIIK 251 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~-~wv~~s~~~~~~~~~~~i~~ 251 (843)
.-.+++|-+..++.+.+.+... ...+...+|++|.|||+-|..+...---.+.|.++ +=.++|...... +.+.
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~--- 107 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE--- 107 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh---
Confidence 3457899999999999998873 48889999999999999877776532223556543 333455443322 0000
Q ss_pred HhCCCCCCccccccchHHHHHHHHHHHHh--CCCe-EEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecc
Q 003154 252 FLMPSSKLSEVMEDRDYEMRKIIHLHGYL--MSKR-YLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSN 320 (843)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 320 (843)
...+-+.+. ....... ..+. -.+|||++... +.|..+.....+....++.|..+..
T Consensus 108 -----------Kik~fakl~--~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 108 -----------KIKNFAKLT--VLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred -----------hhcCHHHHh--hccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 000111111 0000000 0133 36789999865 7899999888876667776655443
No 316
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.44 E-value=0.049 Score=61.25 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccc-cCCeeEEEE-eCCCC-ChHHHHHHHHHHhCC-CCCCccccccchHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFDCKAWVP-VSILY-QPDSLLDNIIKFLMP-SSKLSEVMEDRDYEMRKI 273 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~-~s~~~-~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~ 273 (843)
=+..+|+|.+|+|||||++.|.+ .+.. +=++.++|. |.+.. .+.++.+.+-..+-. ..+.+.........+.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a-- 491 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELA-- 491 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHH--
Confidence 35689999999999999999998 3322 334444443 45433 343443332100100 1110000000111122
Q ss_pred HHHHHHh--CCCeEEEEEcCCC
Q 003154 274 IHLHGYL--MSKRYLIVLDDVW 293 (843)
Q Consensus 274 ~~l~~~l--~~kr~LlVlDdvw 293 (843)
-.+-+++ +++.+||++|++-
T Consensus 492 i~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCch
Confidence 2333344 6899999999993
No 317
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.19 Score=52.23 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=60.1
Q ss_pred cCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHH-hCCCCCCccccccchH-HH
Q 003154 193 EGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKF-LMPSSKLSEVMEDRDY-EM 270 (843)
Q Consensus 193 ~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~-~~ 270 (843)
.+-+.-+++=|+|..|.||||+|-+++-. ++..-..++|++....+++..+. +++.. +..- .-....+.+ ++
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l---~v~~~~~~e~q~ 128 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNL---LVSQPDTGEQQL 128 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcce---eEecCCCHHHHH
Confidence 44356789999999999999999888773 44445589999999999988764 44444 2210 001112222 22
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC
Q 003154 271 RKIIHLHGYLMSKRYLIVLDDVW 293 (843)
Q Consensus 271 ~~~~~l~~~l~~kr~LlVlDdvw 293 (843)
.-++.+......+=-|+|+|-|-
T Consensus 129 ~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 129 EIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHhccCCCCEEEEecCc
Confidence 21144444444445799999883
No 318
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.42 E-value=0.093 Score=58.62 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch--------H
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD--------Y 268 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~--------~ 268 (843)
=+.++|.|-+|+|||||+.++.+... +.+-+.++++-+.+.. .+.++..++...=......--....+. -
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 46789999999999999988887422 2356788888777653 455666655543111100000011111 1
Q ss_pred HHHHHHHHHHHh---CCCeEEEEEcCCC
Q 003154 269 EMRKIIHLHGYL---MSKRYLIVLDDVW 293 (843)
Q Consensus 269 ~~~~~~~l~~~l---~~kr~LlVlDdvw 293 (843)
... ..+.+++ +++++|+++||+-
T Consensus 222 ~~a--~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTG--LTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHH--HHHHHHHHHhcCCceEEEeccch
Confidence 112 4455555 3899999999993
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.40 E-value=0.13 Score=56.42 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=52.4
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcc-cccc
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSE-VMED 265 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~ 265 (843)
+-+.|..+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+. .-++.++...+.-. ....
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~ 145 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAET 145 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccC
Confidence 33444444334579999999999999999998863 3333346778776443 33322 22344443211000 1122
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEcCC
Q 003154 266 RDYEMRKIIHLHGYLMSKRYLIVLDDV 292 (843)
Q Consensus 266 ~~~~~~~~~~l~~~l~~kr~LlVlDdv 292 (843)
+.+.+. +.+. +.+.-+||+|.+
T Consensus 146 ~le~I~--~~i~---~~~~~lVVIDSI 167 (372)
T cd01121 146 NLEDIL--ASIE---ELKPDLVIIDSI 167 (372)
T ss_pred cHHHHH--HHHH---hcCCcEEEEcch
Confidence 233333 3322 235567888988
No 320
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.39 E-value=0.031 Score=55.15 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.++|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 321
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.38 E-value=0.11 Score=57.62 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccchHHHH----
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRDYEMR---- 271 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~---- 271 (843)
.-..++|+|..|+|||||++.+++.. .-+.++++-+.+.. .+.++..+.+..-+.....--....+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 35788999999999999999999732 22455666666544 3445554444332111000000111110000
Q ss_pred --HHHHHHHHh--CCCeEEEEEcCCCC
Q 003154 272 --KIIHLHGYL--MSKRYLIVLDDVWT 294 (843)
Q Consensus 272 --~~~~l~~~l--~~kr~LlVlDdvw~ 294 (843)
-|-.+.+++ +++.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 002233444 58999999999943
No 322
>PRK08149 ATP synthase SpaL; Validated
Probab=94.37 E-value=0.12 Score=57.24 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhCCCCCCccccccch--------H
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLMPSSKLSEVMEDRD--------Y 268 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--------~ 268 (843)
-..++|+|..|+|||||++.+++.. .-+.++...+.. ..++.++..+...........--....+. .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4678999999999999999998732 223444444543 33455666665554322110000000110 1
Q ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCC
Q 003154 269 EMRKIIHLHGYL--MSKRYLIVLDDVWT 294 (843)
Q Consensus 269 ~~~~~~~l~~~l--~~kr~LlVlDdvw~ 294 (843)
... ..+.+++ ++|++||++||+-.
T Consensus 227 ~~a--~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVA--TTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHH--HHHHHHHHHcCCCEEEEccchHH
Confidence 111 2333333 58999999999943
No 323
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.35 E-value=0.17 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++.++|.+|+||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 324
>PTZ00035 Rad51 protein; Provisional
Probab=94.34 E-value=0.32 Score=52.60 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=44.9
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----ccCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVK----HYFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
++|..+=..-.++.|+|.+|+|||||+..++-..... ..=..++|++....|+..++ .++++.++.
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3444444567899999999999999998887532211 11135779998888887774 455666554
No 325
>PRK06217 hypothetical protein; Validated
Probab=94.29 E-value=0.067 Score=52.60 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 326
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.29 E-value=0.023 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCC
Q 003154 201 VAVLDSVGLDKTAFAAEAYNSNYVKHYFD 229 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~ 229 (843)
|-++|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999998 5666674
No 327
>PRK00625 shikimate kinase; Provisional
Probab=94.27 E-value=0.029 Score=54.40 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 328
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.029 Score=54.79 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 329
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.14 Score=48.96 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=59.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC--ChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY--QPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHL 276 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 276 (843)
.+++|+|..|.|||||++.+... -......+++.-.... ...+. ...+.-. ...+..+.++ -.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~---~~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~------~qlS~G~~~r-~~l 91 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL---LKPTSGEILIDGKDIAKLPLEEL----RRRIGYV------PQLSGGQRQR-VAL 91 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCccEEEECCEEcccCCHHHH----HhceEEE------eeCCHHHHHH-HHH
Confidence 68999999999999999999883 2234555554322111 11111 1111110 0022223222 234
Q ss_pred HHHhCCCeEEEEEcCCCCc---hhhHHHHHhcCC-CCCCcEEEEEecchhhh
Q 003154 277 HGYLMSKRYLIVLDDVWTN---DVWEFIQEILPD-NLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 277 ~~~l~~kr~LlVlDdvw~~---~~~~~l~~~~~~-~~~gs~iiiTtR~~~v~ 324 (843)
...+....-++++|+.-.. .....+...+.. ...+..||++|-+....
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5555556778889998543 223333333221 11256788888776544
No 330
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.21 E-value=0.2 Score=51.77 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc--cccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccchHHHH---
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYV--KHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRDYEMR--- 271 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~--- 271 (843)
=+.++|.|-.|+|||||+..+.+.... +.+-+.++++-+.+.. .+.++..++.+.=......--....++....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456899999999999999998875331 2335778888888764 4556665554431111000000111111000
Q ss_pred ---HHHHHHHHh---CCCeEEEEEcCCCCc-hhhHHHHH
Q 003154 272 ---KIIHLHGYL---MSKRYLIVLDDVWTN-DVWEFIQE 303 (843)
Q Consensus 272 ---~~~~l~~~l---~~kr~LlVlDdvw~~-~~~~~l~~ 303 (843)
-|-.+.+++ +++++|+++||+-.. +.+.++..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl 187 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISA 187 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHh
Confidence 013344444 378999999999543 34444443
No 331
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.21 E-value=0.056 Score=54.50 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
.+++.|+|..|.|||||.+.+...... .+-...+|. . ... .....++...+...+........-..++++...+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~-~~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--D-SAT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--C-CcE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999998742111 111111111 1 000 01222223333322211000001112222222222
Q ss_pred HHhCCCeEEEEEcCCCCchh---h----HHHHHhcCCC-CCCcEEEEEecchhhhh
Q 003154 278 GYLMSKRYLIVLDDVWTNDV---W----EFIQEILPDN-LNGSRVLTTVSNIEILT 325 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~~~---~----~~l~~~~~~~-~~gs~iiiTtR~~~v~~ 325 (843)
. +..++-|++||..-...+ . ..+...+... ..+..+|+||-..+++.
T Consensus 104 ~-~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 104 R-LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred H-hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 2 236788999999875421 1 1122223222 23458999999888776
No 332
>PRK05439 pantothenate kinase; Provisional
Probab=94.19 E-value=0.21 Score=52.94 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=44.9
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHH
Q 003154 195 PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRK 272 (843)
Q Consensus 195 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 272 (843)
....-+|||.|.+|+||||+|+.+.. ...... ..+.-++...-+...+.+.. ..+....+.| +..+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~P--es~D~~~l~- 155 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFP--ESYDMRALL- 155 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCc--ccccHHHHH-
Confidence 34588999999999999999998876 333221 23444454443333332221 1111111111 344555566
Q ss_pred HHHHHHHhCCCe
Q 003154 273 IIHLHGYLMSKR 284 (843)
Q Consensus 273 ~~~l~~~l~~kr 284 (843)
..|....+++.
T Consensus 156 -~~L~~Lk~G~~ 166 (311)
T PRK05439 156 -RFLSDVKSGKP 166 (311)
T ss_pred -HHHHHHHcCCC
Confidence 66665555554
No 333
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.15 Score=49.41 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC--CCChHHHHHHHHHHhCCCCCCcc--c-cc-cchHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI--LYQPDSLLDNIIKFLMPSSKLSE--V-ME-DRDYEMR 271 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~--~-~~-~~~~~~~ 271 (843)
-.+++|+|..|.|||||.+.++.- .....+.+++.-.. ........+.+. .+........ . +. .+..+.+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESLRKNIA-YVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHHHhhEE-EEcCCchhccchHHHHhhCHHHHH
Confidence 468999999999999999999883 22334444432110 011111111100 0000000000 0 00 2222333
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCCc---hhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 272 KIIHLHGYLMSKRYLIVLDDVWTN---DVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 272 ~~~~l~~~l~~kr~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
| -.+...+..+.-+++||+-... ...+.+...+.....+..||++|.+.+..
T Consensus 104 r-l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 104 R-IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred H-HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 2 2344555566678999997643 22233333332212356788888776543
No 334
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.18 E-value=0.084 Score=55.07 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=18.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+.|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999883
No 335
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.18 E-value=0.21 Score=56.32 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-.+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999988876
No 336
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.14 E-value=0.14 Score=56.58 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhCCCCCCccccccch---HHH---
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLMPSSKLSEVMEDRD---YEM--- 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~--- 270 (843)
-..++|+|..|+|||||++.+.... + . +..+.+.+.+ ...+.++..+.+..-+.....--....+. ...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~-~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--D-A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C-C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 2 2 2323333333 33445555544333211110000011111 100
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCCCC
Q 003154 271 RKIIHLHGYL--MSKRYLIVLDDVWT 294 (843)
Q Consensus 271 ~~~~~l~~~l--~~kr~LlVlDdvw~ 294 (843)
..|..+.+++ +++++|+++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 0012334444 58999999999943
No 337
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.054 Score=50.35 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
+|.|-|.+|.||||+|+.+.++-... | .+.-.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCC
Confidence 68999999999999999999842221 1 2445788888888775
No 338
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.06 E-value=0.15 Score=52.65 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccccccCCee-EEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccc--h-H---
Q 003154 198 LSVVAVLDSVGLDKTAFA-AEAYNSNYVKHYFDCK-AWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDR--D-Y--- 268 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~--~-~--- 268 (843)
=+-++|.|-.|+|||+|| ..+.+. .+-+.+ +++-+.+.. .+.++.+++...=......--....+ . .
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457899999999999995 666652 233554 666666654 45556555554211110000000011 1 1
Q ss_pred ----HHHHHHHHHHHhCCCeEEEEEcCCCCc-hhhHHHHHhc
Q 003154 269 ----EMRKIIHLHGYLMSKRYLIVLDDVWTN-DVWEFIQEIL 305 (843)
Q Consensus 269 ----~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~l~~~~ 305 (843)
.+.-|+.++. +++.+|+|+||+-.. +.|.++...+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 1222244444 589999999999544 5666665543
No 339
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.04 E-value=0.16 Score=48.93 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=34.5
Q ss_pred eecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 177 IVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 177 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+||.+..+.++++.+..-.....-|-|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 578899999999888764333455669999999999999999983
No 340
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.03 E-value=0.2 Score=55.95 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccc-----cccCCeeEEEEeCCCCChHHHHHHHHHHhCC-CCCCccccccc----
Q 003154 198 LSVVAVLDSVGLDKTAFA-AEAYNSNYV-----KHYFDCKAWVPVSILYQPDSLLDNIIKFLMP-SSKLSEVMEDR---- 266 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~---- 266 (843)
=+.++|.|-.|+|||||| -.+.|...+ .++-+.++++.+++..+...-+.+.++.-+. ....--....+
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 457899999999999997 666664322 1344678888888875433323333333331 10000000011
Q ss_pred --------hHHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 267 --------DYEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 267 --------~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
--.++ +.++. +++.+|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiA--EYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMG--EYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHH--HHHHH--cCCCEEEEEcCchH
Confidence 11122 44443 58999999999954
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.99 E-value=0.17 Score=53.24 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
....+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987755
No 342
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.91 E-value=0.49 Score=46.96 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 343
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.88 E-value=0.068 Score=50.40 Aligned_cols=36 Identities=14% Similarity=-0.153 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEE
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVP 235 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (843)
..||-|.|.+|.||||||+++.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35889999999999999999998 5555545566654
No 344
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.88 E-value=0.49 Score=49.74 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc-CCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-FDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
-.++.|.|.+|+||||++.++... .... =..++|++... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 458889999999999999988763 3222 24578887655 44566666655543
No 345
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.87 E-value=0.16 Score=56.50 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch---HHH---
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD---YEM--- 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~--- 270 (843)
=+-++|.|-.|+|||||+.++....... +=+.++++-+.+.. .+.++.+++...=......--....+. ...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999886632111 11457777776643 455666666543111100000001111 110
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCCC
Q 003154 271 RKIIHLHGYL---MSKRYLIVLDDVW 293 (843)
Q Consensus 271 ~~~~~l~~~l---~~kr~LlVlDdvw 293 (843)
.-|..+.+++ +++++|+++||+-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 0013455555 6899999999994
No 346
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.17 Score=52.45 Aligned_cols=79 Identities=8% Similarity=0.122 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc--cccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYV--KHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
-++|-++|++|.|||+|.+.+++.-.+ .+.|.....+.++.. .++...... ...-...+- +.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE------SgKlV~kmF--~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE------SGKLVAKMF--QK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh------hhhHHHHHH--HH
Confidence 578899999999999999999997443 345555555554322 222222211 112334455 66
Q ss_pred HHHHhCCCe--EEEEEcCC
Q 003154 276 LHGYLMSKR--YLIVLDDV 292 (843)
Q Consensus 276 l~~~l~~kr--~LlVlDdv 292 (843)
|.+.++++. +.+.+|.|
T Consensus 241 I~ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEV 259 (423)
T ss_pred HHHHHhCCCcEEEEEeHHH
Confidence 777776655 34556888
No 347
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.86 E-value=0.16 Score=56.22 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-CChHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-YQPDSLLDNI 249 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i 249 (843)
.-..++|+|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+++.+.
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~ 203 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFT 203 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHh
Confidence 35689999999999999999998732 3455566666553 3444555554
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.82 E-value=0.49 Score=49.17 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 349
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.78 E-value=0.43 Score=45.03 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 350
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.76 E-value=0.081 Score=53.67 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHH
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLL 246 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 246 (843)
...++++.+.....+..+|||.|.||+||+||.-.+...-+-+++==.++=|.-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 5566777777665678899999999999999998887732222221235555556666544443
No 351
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.75 E-value=0.31 Score=50.88 Aligned_cols=143 Identities=14% Similarity=0.044 Sum_probs=78.5
Q ss_pred CCceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccC-CeeEEEEeCCCCChH-HHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF-DCKAWVPVSILYQPD-SLLDNI 249 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~-~~~~~i 249 (843)
...++|-.++...+-.++... .+...-+.|+|+.|.|||+|...+..| .+.| +..+-|........+ -.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 457889888888888887642 122556788999999999998888775 3334 334445555544332 235555
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhCC------CeEEEEEcCCCCch-------hhHHHHHhcCCCCCCcEEEE
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMS------KRYLIVLDDVWTND-------VWEFIQEILPDNLNGSRVLT 316 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdvw~~~-------~~~~l~~~~~~~~~gs~iii 316 (843)
.+|+..+-........+..+.. ..|-..|+. -++..|+|..+-.- -++-+-..-....+-+-|-+
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l--~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENL--SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHhhhheeecccchhH--HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 5555431110001112222323 444455542 35777887775321 11111111123455677888
Q ss_pred Eecch
Q 003154 317 TVSNI 321 (843)
Q Consensus 317 TtR~~ 321 (843)
|||-.
T Consensus 178 Ttrld 182 (408)
T KOG2228|consen 178 TTRLD 182 (408)
T ss_pred ecccc
Confidence 99854
No 352
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.74 E-value=0.22 Score=55.23 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccchH-------
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRDY------- 268 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~------- 268 (843)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. .+.++..+.+..-+.....--....+..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 35689999999999999999999842 23567777776654 3444443333221111000000111110
Q ss_pred ---HHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 269 ---EMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 269 ---~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
.+.-|+.++. ++|++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd--~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRD--QGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccchhH
Confidence 1111144443 58999999999943
No 353
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.74 E-value=0.26 Score=51.49 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=58.8
Q ss_pred ecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCC
Q 003154 178 VGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSS 257 (843)
Q Consensus 178 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 257 (843)
.|...+..+.+..+.... -.+|.|.|..|.||||+++.+.+ .+...-..++.+.-..++....+ .++.
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~-----~q~~--- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI-----NQVQ--- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc-----eEEE---
Confidence 455555444444444333 45899999999999999998866 23221112333322222222110 0110
Q ss_pred CCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHH
Q 003154 258 KLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFI 301 (843)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l 301 (843)
+......... +.++..|+...=.|+++++.+.+....+
T Consensus 130 ----v~~~~~~~~~--~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 130 ----VNEKAGLTFA--RGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred ----eCCcCCcCHH--HHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 1111112345 7778888877888999999988754443
No 354
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.74 E-value=0.038 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 355
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.72 E-value=0.038 Score=55.14 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 356
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.69 E-value=0.3 Score=52.20 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhCCCCCCccccccc----------
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLMPSSKLSEVMEDR---------- 266 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~---------- 266 (843)
-..++|+|..|+|||||.+.+.+.. . -+..+...+.. ..++.++.......-......--....+
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~--~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGT--T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999999999842 2 23334444443 3455555555544322110000000001
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 267 DYEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 267 ~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
.-.+..|+.+++ ++|.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccchH
Confidence 011122244543 58999999999843
No 357
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.58 E-value=0.65 Score=50.05 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 282 SKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 282 ~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
+++-++|+|++... +..+.+...+..-..++.+|+||.+.+
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 34445567999764 567777777665555778888887754
No 358
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.58 E-value=0.082 Score=60.04 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=27.3
Q ss_pred HHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 188 LDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 188 ~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++.+....+++.+|+|.|..|.||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 344444555689999999999999999999987
No 359
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.58 E-value=0.05 Score=54.76 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=37.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccccCCe--eEEEE--e-----CCCCChHHH--HHHHHHHhCCC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDC--KAWVP--V-----SILYQPDSL--LDNIIKFLMPS 256 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~--~~wv~--~-----s~~~~~~~~--~~~i~~~l~~~ 256 (843)
++...|.++||+|.||||..+.++.+ ....+.. ++=.. | .-..++++. .++..++.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 35677888999999999999999984 3333332 22221 1 223355554 45677776653
No 360
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.57 E-value=0.041 Score=54.05 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 361
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.57 E-value=0.052 Score=52.75 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 362
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.52 E-value=0.065 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-.+|+|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999883
No 363
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.52 E-value=0.2 Score=55.69 Aligned_cols=94 Identities=9% Similarity=0.095 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC-CCCChHHHHHHHHHHhCCCCCCccccccchHHHH----
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS-ILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMR---- 271 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~---- 271 (843)
+-..++|.|..|+|||||++.+...... +..+.+-+. +...+.++.+.+...-......--....+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3568999999999999999999874221 333333333 3344555545444331111000000111110000
Q ss_pred --HHHHHHHHh--CCCeEEEEEcCCCC
Q 003154 272 --KIIHLHGYL--MSKRYLIVLDDVWT 294 (843)
Q Consensus 272 --~~~~l~~~l--~~kr~LlVlDdvw~ 294 (843)
-|..+.+++ +++.+|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 012333333 58999999999943
No 364
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.062 Score=50.22 Aligned_cols=47 Identities=26% Similarity=0.166 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPS 256 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 256 (843)
.+++.|+|.+|+||||+.+.+-... +..+ -.+..++--+++...+.-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-----------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-----------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhce-----------eeeHhHHHHHHHHHhCCc
Confidence 6899999999999999998887621 1111 124456666677776663
No 365
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.51 E-value=0.1 Score=55.67 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDN 248 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 248 (843)
.+++-+.|.|||||||+|....- ........++=|++....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47889999999999999988554 33334455777777777777666543
No 366
>PRK13947 shikimate kinase; Provisional
Probab=93.50 E-value=0.047 Score=52.98 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 367
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.50 E-value=0.053 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 368
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.47 E-value=0.39 Score=46.16 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=35.8
Q ss_pred HHHHHHhCCCeEEEEEcC----CCCchhhHHHHHhcCCCCCCcEEEEEecchhhhh
Q 003154 274 IHLHGYLMSKRYLIVLDD----VWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 274 ~~l~~~l~~kr~LlVlDd----vw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~ 325 (843)
-.|.+.+-++.-+++=|. ++....|+-+...-.-+..|..||++|-+.++.+
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 356666667778888775 4444567655443334566999999999998776
No 369
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.47 E-value=0.22 Score=55.32 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch---HHH---
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD---YEM--- 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~--- 270 (843)
-..++|+|..|+|||||++.+.... ..+.++...+.... .+.++...+...-......--....+. ...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998731 22444444444332 344444444333211100000011111 100
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCCCC
Q 003154 271 RKIIHLHGYL--MSKRYLIVLDDVWT 294 (843)
Q Consensus 271 ~~~~~l~~~l--~~kr~LlVlDdvw~ 294 (843)
.-|..+.+++ +++++|+++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 0002233333 58999999999954
No 370
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.40 E-value=0.73 Score=52.88 Aligned_cols=135 Identities=15% Similarity=0.097 Sum_probs=83.3
Q ss_pred CCceecchHHHHHHHHHHHcC--C-CCceEEEEEcCCCChHHHHHHHHhcCcc---cc---ccCCeeEEEEeCCCCChHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG--P-PQLSVVAVLDSVGLDKTAFAAEAYNSNY---VK---HYFDCKAWVPVSILYQPDS 244 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~--~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~---~~F~~~~wv~~s~~~~~~~ 244 (843)
+..+-+||.+..+|..++... + ..-..+-|.|.+|.|||..+..|.+.-+ .+ ..|+ .+.|..-.-....+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 455779999999999988652 2 3345889999999999999999988422 11 2343 23344444456889
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhC-----CCeEEEEEcCCCCchh--hHHHHHhcCC-CCCCcEEEE
Q 003154 245 LLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM-----SKRYLIVLDDVWTNDV--WEFIQEILPD-NLNGSRVLT 316 (843)
Q Consensus 245 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdvw~~~~--~~~l~~~~~~-~~~gs~iii 316 (843)
+...|...+.+.... ..... ..|..+.. .+..+|++|+++..-. -+-+.--|.| ..++||++|
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al------~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAAL------EALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHHhcccCccc---HHHHH------HHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 999999999875421 11222 33444433 3557888888743210 1112222333 346788766
Q ss_pred Ee
Q 003154 317 TV 318 (843)
Q Consensus 317 Tt 318 (843)
.+
T Consensus 545 i~ 546 (767)
T KOG1514|consen 545 IA 546 (767)
T ss_pred EE
Confidence 54
No 371
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.40 E-value=0.52 Score=48.15 Aligned_cols=48 Identities=25% Similarity=0.082 Sum_probs=32.7
Q ss_pred HHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC
Q 003154 190 HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL 239 (843)
Q Consensus 190 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 239 (843)
.|..+=..-.++.|.|.+|+||||||.++... ....-..++|++....
T Consensus 12 ~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 12 LLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred hhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 33344345689999999999999999887652 1122346788876443
No 372
>PRK05922 type III secretion system ATPase; Validated
Probab=93.38 E-value=0.29 Score=54.20 Aligned_cols=99 Identities=8% Similarity=0.090 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-CChHHHHHHHHHHhCCCCCCccccccch---H-----
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-YQPDSLLDNIIKFLMPSSKLSEVMEDRD---Y----- 268 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~----- 268 (843)
-..++|+|..|+|||||.+.+.+.. .-+....+.+++. ..+.+.+.+...........--....+. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999998732 2244444444432 3344555444433322111000111111 0
Q ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCc-hhhHHHH
Q 003154 269 EMRKIIHLHGYL--MSKRYLIVLDDVWTN-DVWEFIQ 302 (843)
Q Consensus 269 ~~~~~~~l~~~l--~~kr~LlVlDdvw~~-~~~~~l~ 302 (843)
... ..+.+++ +++++|+++||+-.. +...++.
T Consensus 233 ~~a--~tiAEyfrd~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 233 RAA--MTIAEYFRDQGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHH--HHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 111 3344444 589999999999432 3334443
No 373
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.38 E-value=0.21 Score=55.38 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccc--cCC---------eeEEEEeCCCCChHHHHHHHHHHhC-CCCCCcccccc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKH--YFD---------CKAWVPVSILYQPDSLLDNIIKFLM-PSSKLSEVMED 265 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~ 265 (843)
=+-++|.|-.|+|||||+..+.+..+..+ -.| .++++-+.+.....+.+.+.+..-+ .....--....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 46789999999999999999987533100 022 5677778887666666666555544 11100000111
Q ss_pred ch---HHH---HHHHHHHHHhC---CCeEEEEEcCCCCc-hhhHHHH
Q 003154 266 RD---YEM---RKIIHLHGYLM---SKRYLIVLDDVWTN-DVWEFIQ 302 (843)
Q Consensus 266 ~~---~~~---~~~~~l~~~l~---~kr~LlVlDdvw~~-~~~~~l~ 302 (843)
+. ... .-|..+.++++ ++++|+++||+-.. +.+.++.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REis 267 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVS 267 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHH
Confidence 11 100 00133455554 69999999999432 3344443
No 374
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.35 E-value=0.087 Score=54.20 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHH
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 250 (843)
-.+++..+.....+..||||.|.||+||+||.-.+.....-+++==.++=|.-|.+++--.++-+=+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 4567777777667789999999999999999988776433333333456666677777666554433
No 375
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.34 E-value=0.4 Score=51.95 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCChHHH-HHHHHhcCccccccCCeeEEEEeC
Q 003154 198 LSVVAVLDSVGLDKTA-FAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTt-La~~v~~~~~~~~~F~~~~wv~~s 237 (843)
-++|++||..|||||| ||+..+.-.. ...=..+..++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtD 242 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTD 242 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEec
Confidence 7899999999999996 7777765211 1222346666654
No 376
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.32 E-value=0.062 Score=50.71 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 003154 200 VVAVLDSVGLDKTAFAAEAY 219 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~ 219 (843)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999986
No 377
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.31 E-value=0.19 Score=58.85 Aligned_cols=75 Identities=9% Similarity=0.041 Sum_probs=51.8
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-cCCeeEEEEeCCCCChHHHHHHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFDCKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
-.+++|.++.++.+...+..+. -+.++|++|+||||+|+.+.+ .+.. .|...+++. ....+...+++.+..+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~-n~~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYP-NPEDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEe-CCCCCchHHHHHHHHh
Confidence 3578999998888887776543 455899999999999999997 4433 333333332 2233556668888877
Q ss_pred hCC
Q 003154 253 LMP 255 (843)
Q Consensus 253 l~~ 255 (843)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 764
No 378
>PRK13949 shikimate kinase; Provisional
Probab=93.31 E-value=0.055 Score=52.36 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-|.|+|++|+||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 379
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.30 E-value=0.075 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 380
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.30 E-value=0.11 Score=52.03 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=59.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcc-ccccchHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSE-VMEDRDYEMRKIIHL 276 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~l 276 (843)
..++.|.|..|.||||+.+.+.-..-.. ..-++|.+.. .. -.+...|...++..+.... ..... .++.+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs-~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFA-SEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHH-HHHHHHHHH
Confidence 4789999999999999999887531111 1111222111 11 1223333333333221100 01111 112211222
Q ss_pred HHHhCCCeEEEEEcCCCCc---hh----hHHHHHhcCCCCCCcEEEEEecchhhhh
Q 003154 277 HGYLMSKRYLIVLDDVWTN---DV----WEFIQEILPDNLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 277 ~~~l~~kr~LlVlDdvw~~---~~----~~~l~~~~~~~~~gs~iiiTtR~~~v~~ 325 (843)
.. +..++-|+++|..-.. .+ ...+...+.. .|+.+|+||-..+++.
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAA 155 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHH
Confidence 22 2356789999998432 22 1222233322 2789999999988876
No 381
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.29 E-value=0.062 Score=53.79 Aligned_cols=22 Identities=5% Similarity=-0.065 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 382
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.26 E-value=0.087 Score=53.58 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003154 201 VAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~ 220 (843)
|.|+|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999977
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.24 E-value=0.057 Score=52.81 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 384
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.23 E-value=0.052 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 385
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.22 E-value=0.18 Score=59.79 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=32.6
Q ss_pred CceecchHHHHHHHHHHH---cCC-------CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLI---EGP-------PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|.+..++++.+.+. ... .-.+-|.++|.+|.||||+|+.+.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 356787777666655443 211 11234889999999999999999883
No 386
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.21 E-value=0.11 Score=54.34 Aligned_cols=45 Identities=24% Similarity=0.145 Sum_probs=37.2
Q ss_pred cCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC
Q 003154 193 EGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL 239 (843)
Q Consensus 193 ~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 239 (843)
.+=+.-+++.|+|.+|+|||++|.++.. +.......++||+..+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 3335678999999999999999988888 56666888999988765
No 387
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.1 Score=61.45 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=34.8
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|||++++++++.|.....+-+| .+|-+|||||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 46899999999999999876543333 479999999997655554
No 388
>PF14516 AAA_35: AAA-like domain
Probab=93.21 E-value=0.74 Score=49.91 Aligned_cols=118 Identities=12% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-----CChHHH
Q 003154 171 KNRDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-----YQPDSL 245 (843)
Q Consensus 171 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~ 245 (843)
..+.+..|+|...-+++.+.|..++ ..+.|.|.-.+|||+|...+.+..+. ..| ..+++.+..- .+..+.
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 3445567888877777787777643 48899999999999999999874222 233 3456765441 245555
Q ss_pred HHHHHH----HhCCCCCCcc-c--cccchHHHHHHHHHHHHh-C--CCeEEEEEcCCCCc
Q 003154 246 LDNIIK----FLMPSSKLSE-V--MEDRDYEMRKIIHLHGYL-M--SKRYLIVLDDVWTN 295 (843)
Q Consensus 246 ~~~i~~----~l~~~~~~~~-~--~~~~~~~~~~~~~l~~~l-~--~kr~LlVlDdvw~~ 295 (843)
++.++. ++........ + ......... ..+.+.+ + +++.+|++|+|...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~--~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCT--EYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHH--HHHHHHHHhcCCCCEEEEEechhhh
Confidence 555544 4443322111 0 011223334 4455443 2 68999999999743
No 389
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.20 E-value=0.17 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+..+|.|+|.+|+|||||...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999988
No 390
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.28 Score=54.75 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-..++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999873
No 391
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.19 E-value=0.045 Score=48.42 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 003154 201 VAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~ 221 (843)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998873
No 392
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=0.012 Score=56.67 Aligned_cols=61 Identities=21% Similarity=0.420 Sum_probs=29.1
Q ss_pred CCcccEEEecCcccccccccc--cccccccceEeeecCCCCCCCC-ccccCCCCCcEEEecCCC
Q 003154 758 FPKLKVLHLKSMIWLEEWTMG--NEAMPKLECLVVNPCAYLKRLP-EHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 758 f~~L~~L~L~~~~~l~~l~~~--~~~lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 818 (843)
+++++.|.+.+|..+.+|..+ .+-.|+|+.|+|++|+.+++-. ..+..+++|+.|.+.+.|
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 444555555555555544221 1234555555555555544321 234455555555555544
No 393
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.14 E-value=0.26 Score=52.92 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 003154 201 VAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~ 221 (843)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 394
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.13 E-value=0.23 Score=56.90 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHL 276 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 276 (843)
.-++.-.+|.+|+||||||.-|+...- | .++=|.+|...+...+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s------------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS------------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc-------------------
Confidence 568899999999999999999988422 2 2555667777666666555554443211
Q ss_pred HHHhC--CCeEEEEEcCCCCc
Q 003154 277 HGYLM--SKRYLIVLDDVWTN 295 (843)
Q Consensus 277 ~~~l~--~kr~LlVlDdvw~~ 295 (843)
.+. ++..-||+|.++..
T Consensus 381 --~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 --VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred --ccccCCCcceEEEecccCC
Confidence 121 45667889999765
No 395
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.12 E-value=0.11 Score=51.62 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=27.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccC--------CeeEEEEeCCC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--------DCKAWVPVSIL 239 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 239 (843)
.++.|+|.+|+||||++..+.........| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998887753322233 25788876665
No 396
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.11 E-value=0.31 Score=57.92 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHH-cCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCC-ccccccc
Q 003154 189 DHLI-EGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKL-SEVMEDR 266 (843)
Q Consensus 189 ~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~ 266 (843)
.+|. .+=..-+++-|+|.+|+||||||.+++-. ....=..++|+.....++.. .+++++...+. --.....
T Consensus 50 ~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~ 122 (790)
T PRK09519 50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDT 122 (790)
T ss_pred HhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCC
Confidence 3444 33345788889999999999999776652 22223567899888777743 66666653210 0012233
Q ss_pred hHHHHHHHHHHHHhC-CCeEEEEEcCCC
Q 003154 267 DYEMRKIIHLHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 267 ~~~~~~~~~l~~~l~-~kr~LlVlDdvw 293 (843)
.++.. ..+...++ ++--|||+|-+-
T Consensus 123 ~E~~l--~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 123 GEQAL--EIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHH--HHHHHHhhcCCCeEEEEcchh
Confidence 34444 55666564 455689999985
No 397
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.09 E-value=0.071 Score=52.20 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++|+|+|..|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999998
No 398
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.08 E-value=0.22 Score=55.29 Aligned_cols=96 Identities=8% Similarity=0.140 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch---H---HH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD---Y---EM 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~---~---~~ 270 (843)
=+-++|.|-+|+|||+|+.++..... +.+-+.++++-+.+.. .+.++.+++...=......--....+. . ..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999999999877522 2334788888887654 355565555442111100000001111 0 00
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCCCC
Q 003154 271 RKIIHLHGYL---MSKRYLIVLDDVWT 294 (843)
Q Consensus 271 ~~~~~l~~~l---~~kr~LlVlDdvw~ 294 (843)
.-|-.+.+++ +++++|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1114455555 46899999999954
No 399
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.07 E-value=0.059 Score=50.96 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+|.|.|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999873
No 400
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.06 E-value=0.08 Score=53.14 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=24.9
Q ss_pred HHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 191 LIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 191 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.++....+.|.|+|..|+|||||++.+..
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334445678999999999999999999976
No 401
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.04 E-value=0.51 Score=44.11 Aligned_cols=106 Identities=8% Similarity=0.074 Sum_probs=79.3
Q ss_pred chHHHHHHHHHHHhcccccCCchhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhh-ccCChhHHHHHHHHHH
Q 003154 3 INLGLFSERLRRLLAGEEGTLPDAAKEGIQNLHTEIEVVTSWLRDYDYDLAWLLMQIGAAAED-QIHSTDLKAIMKEINR 81 (843)
Q Consensus 3 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~wl~~l~~ 81 (843)
||++.+++.+...+.+. ......++.-.++|...++.|.-++++.+. . ..-+..-+.-++++.+
T Consensus 9 aalG~~~~eLlk~v~~~-~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~--------------~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 9 AALGAVFGELLKAVIDA-SKKSLSFKSILKRLESTLESIIPIIKEIDK--------------LNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHhhhHHHHHHH--------------HhhhcCCchhHHHHHHHH
Confidence 56778888888888877 777788888999999999999999999988 3 2233333777889999
Q ss_pred HhhhhhhHHhhhhcccccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 003154 82 FAYESEKVIDTFIIPTIMEQQKSGSSSKEIRDALLGLQRKIIDIKQ 127 (843)
Q Consensus 82 ~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 127 (843)
...+++++++.|..-... +-+..++.+++|+++.+.+....+
T Consensus 74 ~L~~g~~LV~k~sk~~r~----n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVRRW----NLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHHhccccHH----HHHhhHhHHHHHHHHHHHHHHHhc
Confidence 999999999988542110 011167778888888887766544
No 402
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.02 E-value=0.25 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.|-+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3567789999999999999987
No 403
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.00 E-value=0.15 Score=47.43 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=29.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCCe-eEEEEeCCCCChHHHHH
Q 003154 201 VAVLDSVGLDKTAFAAEAYNSNYVKHYFDC-KAWVPVSILYQPDSLLD 247 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~ 247 (843)
|-++|.+|+|||+||+.++. .. +. ..-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEecccccccccee
Confidence 56899999999999999998 33 32 33456777777776653
No 404
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.97 E-value=0.081 Score=52.74 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+...+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 405
>PRK06820 type III secretion system ATPase; Validated
Probab=92.95 E-value=0.48 Score=52.73 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL 239 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 239 (843)
-..++|+|..|+|||||++.+.... +-+..+...+.+.
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGer 200 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGER 200 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccC
Confidence 4578999999999999999998731 2345555556555
No 406
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.94 E-value=0.23 Score=53.28 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
-..+.|+|..|.|||||++.+... +.... .++.+.-..+..... ..... +..... ......-... +.+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~~-l~~~~~---~~~~~~~~~~--~~l~ 212 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYVH-LFYSKG---GQGLAKVTPK--DLLQ 212 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEEE-EEecCC---CCCcCccCHH--HHHH
Confidence 468999999999999999998873 22211 222222111111111 00000 000000 0011112334 6667
Q ss_pred HHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 278 GYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
..|+...=.||+|.+.+.+.|+.+.... .++.| ++.|+-..+
T Consensus 213 ~~Lr~~pd~ii~gE~r~~e~~~~l~a~~-~g~~~--~i~T~Ha~~ 254 (308)
T TIGR02788 213 SCLRMRPDRIILGELRGDEAFDFIRAVN-TGHPG--SITTLHAGS 254 (308)
T ss_pred HHhcCCCCeEEEeccCCHHHHHHHHHHh-cCCCe--EEEEEeCCC
Confidence 7777777789999999888776554433 32222 456655444
No 407
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.94 E-value=0.13 Score=51.44 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=38.8
Q ss_pred CceecchHHHHH---HHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEE---LLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++||.++.+.+ |++.|.++ +...+-|-.+|.+|.|||.+|+.+.|.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 578998887654 67777765 356888999999999999999999994
No 408
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.93 E-value=0.071 Score=49.70 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccc-ccCCeeEEEEeCC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVK-HYFDCKAWVPVSI 238 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~ 238 (843)
++|+|+|..|+|||||++.+.+. .. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 48999999999999999999994 43 4555555555544
No 409
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.93 E-value=0.63 Score=54.25 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-..++|+|..|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 410
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.88 E-value=0.34 Score=53.77 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-..++|+|..|+|||||++.+..
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g 177 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITR 177 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhc
Confidence 357899999999999999999987
No 411
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.87 E-value=0.63 Score=48.08 Aligned_cols=117 Identities=17% Similarity=0.076 Sum_probs=77.3
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
++|+|-... .+++.++......-+.+.|+|+.|+|||+-++.+++. .+..+.+..+..++...++..+.....
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred ccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHh
Confidence 455554332 3344444443333448889999999999999999984 233445567888888888888777776
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcC
Q 003154 255 PSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILP 306 (843)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~ 306 (843)
.... ....... ..+...+++..-+|+.|..... ..++.+..-..
T Consensus 145 ~~~~------~~~~d~~--~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 145 GATD------GTINDLT--ERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cccc------hhHHHHH--HHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 6432 2234444 6777777888889999988654 46666655443
No 412
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.86 E-value=0.063 Score=56.21 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+++.+.... +-+-++|..|+|||++++....
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 455666666543 4568999999999999999876
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.79 E-value=0.41 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999987765
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.78 E-value=0.16 Score=50.48 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=27.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccc-CCeeEEEEeCCCCChH
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHY-FDCKAWVPVSILYQPD 243 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~ 243 (843)
.|+|+|-||+||||+|..+... -.+++ |+ +.=|.....+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCChH
Confidence 5899999999999999885442 12222 33 3445555555543
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.77 E-value=0.56 Score=50.82 Aligned_cols=90 Identities=9% Similarity=0.056 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
+.++++++|..|+||||++..+... ....=..+.+|+..... ...+-++..++.++... ....+..++. ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv----~~~~dp~dL~--~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL----IVATSPAELE--EA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE----EecCCHHHHH--HH
Confidence 4789999999999999999888763 22222346666654322 22333444444443221 1223455555 44
Q ss_pred HHHHh-CCCeEEEEEcCCCC
Q 003154 276 LHGYL-MSKRYLIVLDDVWT 294 (843)
Q Consensus 276 l~~~l-~~kr~LlVlDdvw~ 294 (843)
+...- .+..=+|++|-.-.
T Consensus 277 l~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHhcCCCCEEEEECCCC
Confidence 44332 13445777787754
No 416
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.76 E-value=0.076 Score=51.78 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 417
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.76 E-value=0.083 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCcc
Q 003154 201 VAVLDSVGLDKTAFAAEAYNSNY 223 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~~~ 223 (843)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 418
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.76 E-value=0.19 Score=45.16 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCceecchHHHHHHHHHHHc----C-CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIE----G-PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~----~-~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...++|.+-..+.|++.+.+ + .++.-|++..|..|+|||.+++.+++.
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45788877777777666643 2 356889999999999999977777664
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.76 E-value=0.59 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
|+.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 477999999999999999984
No 420
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.75 E-value=0.18 Score=59.03 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=56.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
..++|.++.++.+...+..+ +.+.++|.+|.||||+|+.+.+. --..+|+..+|..- ...+...+++.+..+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 46889999888888777654 36888999999999999999874 12234677888665 34467777888877666
Q ss_pred C
Q 003154 255 P 255 (843)
Q Consensus 255 ~ 255 (843)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 4
No 421
>PRK13975 thymidylate kinase; Provisional
Probab=92.73 E-value=0.081 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999983
No 422
>PRK14530 adenylate kinase; Provisional
Probab=92.68 E-value=0.077 Score=53.71 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 423
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.67 E-value=0.23 Score=54.13 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
-..|.|.|..|.||||+.+.+.+ .+..+...+++.- .++... .... ...+..+.+ . ..+..... +.++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~--~~~~-~~~~i~q~e---v-g~~~~~~~--~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEY--VHRN-KRSLINQRE---V-GLDTLSFA--NALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhh--hccC-ccceEEccc---c-CCCCcCHH--HHHH
Confidence 46899999999999999999887 3444555555543 222111 0000 000000001 1 11123455 7788
Q ss_pred HHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 278 GYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 278 ~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
..|+...=.|++|.+.+.+.+....... ..|-.|+.|+-..++
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 8888888899999999888776533332 235455555544443
No 424
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.62 E-value=0.17 Score=54.25 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+++.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3455665554445688999999999999999998776
No 425
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.61 E-value=0.078 Score=50.30 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003154 201 VAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~ 220 (843)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 426
>PRK13948 shikimate kinase; Provisional
Probab=92.61 E-value=0.091 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
....|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 427
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.57 E-value=0.21 Score=49.64 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+|+|.|..|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 428
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.56 E-value=0.29 Score=54.79 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCC--eeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccchHHH----
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD--CKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRDYEM---- 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---- 270 (843)
=+-++|.|-.|+|||||+..+.+.....+.+. .++++-+.+.. .+.++..++...=......--....+....
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 45789999999999999999988543322222 56666676543 455555555432111110000011111000
Q ss_pred --HHHHHHHHHhC---CCeEEEEEcCCCCc-hhhHHHH
Q 003154 271 --RKIIHLHGYLM---SKRYLIVLDDVWTN-DVWEFIQ 302 (843)
Q Consensus 271 --~~~~~l~~~l~---~kr~LlVlDdvw~~-~~~~~l~ 302 (843)
--|..+.++++ ++++|+++||+-.. +.+.++.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIs 258 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREIS 258 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHH
Confidence 00133455554 78999999999432 3344443
No 429
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.54 E-value=0.14 Score=51.11 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
=.++||+|..|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 430
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.53 E-value=0.29 Score=48.97 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSN 222 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~ 222 (843)
...|+|+|.+|+|||||...+.+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch
Confidence 5689999999999999999998863
No 431
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.50 E-value=0.38 Score=53.36 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-..++|+|..|+|||||++.+.+.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998873
No 432
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.49 E-value=0.093 Score=48.77 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.|+|+|..|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999883
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.47 E-value=0.084 Score=51.37 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 434
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.22 Score=57.52 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=57.3
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChH
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPD 243 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 243 (843)
.++.|.+..++.+.+.+.-. -...+.+-++|++|.|||.||+++++ ..+..|-.+.+-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~--------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS--------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH---------
Confidence 35566676666665544321 13466888999999999999999999 444445332221
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 244 SLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
+++... -...+..+. .......+...+.|.+|.+..
T Consensus 311 ----~l~sk~---------vGesek~ir--~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 311 ----ELLSKW---------VGESEKNIR--ELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred ----HHhccc---------cchHHHHHH--HHHHHHHcCCCcEEEEEchhh
Confidence 111111 112233444 455555567889999999953
No 435
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.45 E-value=0.098 Score=51.58 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999874
No 436
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.42 E-value=0.31 Score=58.15 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=37.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++|.+..+.++.+.+..-.....-|-|+|..|+|||++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899999999888877654333344789999999999999999873
No 437
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.40 E-value=0.11 Score=51.62 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999883
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.40 E-value=0.17 Score=49.86 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcc
Q 003154 182 DKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSE 261 (843)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 261 (843)
.+..+++...... -..++|+|..|.||||+++.+..- +... ...+-+.-....... ..... ++....+.
T Consensus 12 ~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~--i~~~-~~~i~ied~~E~~~~--~~~~~-~~~~~~~~-- 80 (186)
T cd01130 12 PLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAF--IPPD-ERIITIEDTAELQLP--HPNWV-RLVTRPGN-- 80 (186)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEECCccccCCC--CCCEE-EEEEecCC--
Confidence 3444444444433 468999999999999999998873 3221 122222111111100 00000 00000000
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchhhHHHHHh
Q 003154 262 VMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDVWEFIQEI 304 (843)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~ 304 (843)
.......... +.++..++...=.++++.+.+.+.|+.+...
T Consensus 81 ~~~~~~~~~~--~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 81 VEGSGEVTMA--DLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred CCCCCccCHH--HHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 0011122344 6666777777778889999998888766544
No 439
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.39 E-value=0.19 Score=53.52 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=41.4
Q ss_pred CCceecchHHHHHHHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++|.++.++++++.+... +..-+|+-.+|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999763 34678999999999999999999877
No 440
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.38 E-value=0.1 Score=51.65 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|||+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 441
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.37 E-value=0.0067 Score=59.41 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=72.5
Q ss_pred HHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccc
Q 003154 534 KICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLR 613 (843)
Q Consensus 534 ~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 613 (843)
.-...++..++||++.+.+..+-..++.+..|..|+++.|.+.-+|.+. +.+..+..+++..|+.+..|.+.+.+++++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3345667788899998887777777888888888999988888899887 888888888888888889999899999999
Q ss_pred ccccccccc
Q 003154 614 HLNFGLITL 622 (843)
Q Consensus 614 ~L~L~~~~l 622 (843)
++++-.+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 888655543
No 442
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.36 E-value=0.49 Score=54.68 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=36.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|....+.++++.+..-...-.-|-|+|..|.||+++|+.++.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 4689999998888887754222234477999999999999999876
No 443
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=0.015 Score=56.00 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=67.0
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCC-ccccCCCCCCcccEEEecCccccccc-ccccccccccce
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGR-KLACGSDGFPKLKVLHLKSMIWLEEW-TMGNEAMPKLEC 787 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~f~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~ 787 (843)
..++.++-+++.+......-+.+++.++.|.+.+|...+. -+....+.+|+|+.|+|++|+.+++- -..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3467777777777777778888999999999997765442 23334456899999999999998865 234578999999
Q ss_pred EeeecCCCCC
Q 003154 788 LVVNPCAYLK 797 (843)
Q Consensus 788 L~l~~c~~l~ 797 (843)
|.|.+-+...
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 9998877554
No 444
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.35 E-value=0.39 Score=54.17 Aligned_cols=52 Identities=19% Similarity=0.030 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC
Q 003154 186 ELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL 239 (843)
Q Consensus 186 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 239 (843)
.+-+.|..+=..-.++.|.|.+|+|||||+.++... ....=..++|++..+.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 333444444344679999999999999999998874 3222235677775443
No 445
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.31 E-value=0.099 Score=50.76 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...|.|+|+.|.||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999873
No 446
>PRK04328 hypothetical protein; Provisional
Probab=92.31 E-value=0.48 Score=49.04 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC
Q 003154 190 HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL 239 (843)
Q Consensus 190 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 239 (843)
+|..+=..-.++.|.|.+|.|||+||.++... .. ..=...+|++..+.
T Consensus 15 lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 15 ILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred HhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 34344345689999999999999999886652 22 22356788887663
No 447
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.29 E-value=0.78 Score=44.10 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCee--EEEEeCCCCChHHHHHHHHHHhCC--CCCCccccccc-------
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCK--AWVPVSILYQPDSLLDNIIKFLMP--SSKLSEVMEDR------- 266 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~--~wv~~s~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~------- 266 (843)
...|-|++-.|.||||.|..+.-. .....+.+. =|+--.........+... .+.- ......+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 457888888999999999777663 122223221 122222223333444332 1110 00000000111
Q ss_pred hHHHHHHHHHHHHhCCCe-EEEEEcCCCCc-----hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 267 DYEMRKIIHLHGYLMSKR-YLIVLDDVWTN-----DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 267 ~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
..+.. +..++.+...+ =|||||.+-.. -+.+.+...+.....+.-||+|-|+.
T Consensus 82 ~~~~~--~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAW--QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHH--HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11222 44455554444 59999998533 24455666665556677999999975
No 448
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.28 E-value=0.55 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 449
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.28 E-value=0.35 Score=53.56 Aligned_cols=91 Identities=9% Similarity=0.075 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch---------
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD--------- 267 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~--------- 267 (843)
-..++|+|..|+|||||++.+.+.. + -+..+.+.+.+.. .+.++..+....=......--....+.
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~--~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT--E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 1 2344445555543 344444443332110000000000110
Q ss_pred -HHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 268 -YEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 268 -~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
..+.-|+.++. +++++|+++||+-.
T Consensus 213 ~~a~tiAEyfr~--~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRD--QGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEeChHH
Confidence 01111244444 58999999999943
No 450
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.28 E-value=0.091 Score=55.45 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.|+|+|-|||||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998877765
No 451
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.27 E-value=0.2 Score=48.49 Aligned_cols=39 Identities=15% Similarity=-0.002 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccc-ccCCeeEEEEeCC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVK-HYFDCKAWVPVSI 238 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~ 238 (843)
..++-+.|..|+|||.||+.+.. .+. +.....+-+..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 56788999999999999999988 444 4445555555544
No 452
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.25 E-value=0.14 Score=50.40 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV 236 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (843)
.++|.|+|..|+|||||++++.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999998 55667765555553
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.22 E-value=0.1 Score=52.39 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999884
No 454
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=92.19 E-value=0.6 Score=52.23 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccccccCCee-EEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch-------
Q 003154 198 LSVVAVLDSVGLDKTAFA-AEAYNSNYVKHYFDCK-AWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD------- 267 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~------- 267 (843)
=+-++|.|-.|+|||||| ..+.+. ..-|.+ +++-+.+.. .+.++.+.+...=......--....+.
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 457899999999999995 556652 234555 777787654 445555544432111100000000110
Q ss_pred -----HHHHHHHHHHHHhCCCeEEEEEcCCCCc-hhhHHHH
Q 003154 268 -----YEMRKIIHLHGYLMSKRYLIVLDDVWTN-DVWEFIQ 302 (843)
Q Consensus 268 -----~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~l~ 302 (843)
-.++ +.++. +++++|+|+||+-.. ..+.++.
T Consensus 217 ap~~a~aiA--Eyfr~--~G~~VLlv~DdlTr~A~A~REis 253 (485)
T CHL00059 217 APYTGAALA--EYFMY--RGRHTLIIYDDLSKQAQAYRQMS 253 (485)
T ss_pred HHHHHhhHH--HHHHH--cCCCEEEEEcChhHHHHHHHHHH
Confidence 1122 44443 589999999999543 3444444
No 455
>PRK13946 shikimate kinase; Provisional
Probab=92.19 E-value=0.098 Score=51.46 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+.|.++|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999998
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.18 E-value=0.5 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.||+++|..|+||||.+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999988888863
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.13 E-value=0.61 Score=48.00 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+..|+|.||+||||||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 557899999999999998876
No 458
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.12 E-value=1.3 Score=51.54 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 459
>PLN02924 thymidylate kinase
Probab=92.12 E-value=0.33 Score=49.10 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-..|+|-|..|+||||+|+.+.+.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~ 39 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSF 39 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 460
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.32 Score=48.41 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 173 RDNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...++-|.|-.+++|.+...-+ -+..+=|-.+|.+|.|||.||++|+|+
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3456778898888888876432 134666788999999999999999995
No 461
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.10 E-value=0.099 Score=50.41 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 003154 201 VAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~~ 221 (843)
|.|.|.+|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 462
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.09 E-value=1.1 Score=50.96 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 463
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.08 E-value=0.17 Score=54.00 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 185 EELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 185 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..+++-+........+|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3444544444456899999999999999999998763
No 464
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.08 E-value=0.083 Score=29.42 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=5.5
Q ss_pred cCcEEeCCCCcCccc
Q 003154 588 NLYTLDMPSSYIDHT 602 (843)
Q Consensus 588 ~L~~L~L~~~~l~~l 602 (843)
+|++|++++|.+.++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 465
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.06 E-value=0.11 Score=52.48 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998877765
No 466
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.06 E-value=0.63 Score=51.91 Aligned_cols=90 Identities=10% Similarity=0.104 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC-CCChHHHHHHHHHHhCCCCCCccccccchH--------
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI-LYQPDSLLDNIIKFLMPSSKLSEVMEDRDY-------- 268 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-------- 268 (843)
-..++|+|..|+|||||.+.+... .. -+....+.+.. ...+.+...+....-......--....+..
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~--~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG--AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 567899999999999999999983 22 23444444444 334445544433321111100000011110
Q ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCC
Q 003154 269 EMRKIIHLHGYL--MSKRYLIVLDDVW 293 (843)
Q Consensus 269 ~~~~~~~l~~~l--~~kr~LlVlDdvw 293 (843)
... ..+.+++ +++++|+++||+-
T Consensus 221 ~~a--~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 221 YTA--TAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHH--HHHHHHHHHCCCcEEEEEeCch
Confidence 111 2333444 4789999999994
No 467
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.04 E-value=0.34 Score=52.55 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLD 247 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 247 (843)
...++|.++.+..+...+..+. -+-+.|.+|+|||+||+.+.. .... ...+|.........++.-
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcC
Confidence 3448998888888877776654 477899999999999999998 3332 234555555555555443
No 468
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.03 E-value=0.12 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++++|+++|..|+|||||..++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999999987
No 469
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.02 E-value=1.5 Score=48.76 Aligned_cols=123 Identities=9% Similarity=0.051 Sum_probs=63.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCc--cccccchHHHHHH--
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLS--EVMEDRDYEMRKI-- 273 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~-- 273 (843)
-..++|+|..|+|||||++.++...+ ....++...-.+...+.+..++.+..-+.....- ...........++
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999988422 1122333222233566666665554422111000 0001111111111
Q ss_pred --HHHHHHh--CCCeEEEEEcCCCCc-hhhHHHHHhc---CCCCCCcEEEEEecchhhhh
Q 003154 274 --IHLHGYL--MSKRYLIVLDDVWTN-DVWEFIQEIL---PDNLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 274 --~~l~~~l--~~kr~LlVlDdvw~~-~~~~~l~~~~---~~~~~gs~iiiTtR~~~v~~ 325 (843)
..+.+++ +++.+||++||+-.. +....+...+ |. .|--..+.|....++.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~E 290 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLE 290 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHH
Confidence 2333333 489999999999654 3444454332 32 2545555555555444
No 470
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.96 E-value=0.11 Score=49.57 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
-|..+||.|+||||+.+++.+ ...-+|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 478899999999999999987 444444
No 471
>PHA02774 E1; Provisional
Probab=91.95 E-value=0.49 Score=53.77 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-+..+..+|. +.++-.-+.|+|.+|.|||.+|..+.+
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3445555553 334456899999999999999999988
No 472
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.42 Score=57.22 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=69.8
Q ss_pred CceecchHHHHHHHHHHHcCC------CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGP------PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDN 248 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 248 (843)
..++|.++.+..|.+.+.... .....+.+.|..|+|||-||+++.. .+-+..+..+-++.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 467888888888888887532 1467788899999999999999987 4433334444443332 222
Q ss_pred HHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeE-EEEEcCCCCch--hhHHHHHhcC
Q 003154 249 IIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRY-LIVLDDVWTND--VWEFIQEILP 306 (843)
Q Consensus 249 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~--~~~~l~~~~~ 306 (843)
+.+-++.+.. ... .+.. ..|-+.++.+.| .|+||||...+ ....+...+.
T Consensus 633 vskligsp~g---yvG---~e~g--g~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPG---YVG---KEEG--GQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcc---ccc---chhH--HHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 2232232221 111 1222 566777877776 55679998663 4444444443
No 473
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.88 E-value=0.16 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999874
No 474
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.86 E-value=0.12 Score=54.67 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=19.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999998877665
No 475
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.85 E-value=0.57 Score=49.82 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=53.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccC-CeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcccc-ccchHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYF-DCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVM-EDRDYEMRKIIHL 276 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~l 276 (843)
..|.|.|..|.||||+++.+.+ .+.... +.++ +++..... +. +... ..-.+. ........ +.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~~E---l~------~~~~-~~v~~~~~~~~~~~~--~~l 197 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDTRE---LQ------CAAP-NVVQLRTSDDAISMT--RLL 197 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCchh---hc------CCCC-CEEEEEecCCCCCHH--HHH
Confidence 4577999999999999999987 333322 2232 23332211 10 0000 000000 01112556 778
Q ss_pred HHHhCCCeEEEEEcCCCCchhhHHHHHh
Q 003154 277 HGYLMSKRYLIVLDDVWTNDVWEFIQEI 304 (843)
Q Consensus 277 ~~~l~~kr~LlVlDdvw~~~~~~~l~~~ 304 (843)
+..|+...=-||+..+.+.+.|+.+...
T Consensus 198 ~~aLR~~pD~iivGEiR~~ea~~~l~a~ 225 (299)
T TIGR02782 198 KATLRLRPDRIIVGEVRGGEALDLLKAW 225 (299)
T ss_pred HHHhcCCCCEEEEeccCCHHHHHHHHHH
Confidence 8888888778889999998888765443
No 476
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.86 Score=45.83 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=39.0
Q ss_pred CCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCccccccC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF 228 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 228 (843)
.+++-|-.+.++++.+....+ -+..+=|-.+|.+|.|||-+|++|+| +....|
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 345667788888887765432 13466788899999999999999999 444434
No 477
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.83 E-value=0.096 Score=50.33 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003154 201 VAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 201 i~I~G~gGvGKTtLa~~v~~ 220 (843)
|.|+|.+|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 478
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.82 E-value=0.12 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-|+|+|.+|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56899999999999999999886
No 479
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.80 E-value=0.12 Score=54.50 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5788999999999998877655
No 480
>PRK06761 hypothetical protein; Provisional
Probab=91.79 E-value=0.24 Score=51.77 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
++|.|.|.+|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 481
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.78 E-value=0.79 Score=46.39 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.++.|.|..|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999998876
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.75 E-value=0.11 Score=49.45 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
|++|+|..|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 483
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=1.4 Score=51.92 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=35.4
Q ss_pred CceecchHHHHHHHH---HHHcCC-------CCceEEEEEcCCCChHHHHHHHHhcCc
Q 003154 175 NDIVGLDDKMEELLD---HLIEGP-------PQLSVVAVLDSVGLDKTAFAAEAYNSN 222 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~---~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 222 (843)
.++.|.|+.+++|.+ +|..++ .-++=+-++|.+|.|||-||++++-..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 467888877666554 555542 224557889999999999999999853
No 484
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.73 E-value=0.5 Score=52.55 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-CChHHHHHHHHHHhCCCCCCccccccch---HHH---
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-YQPDSLLDNIIKFLMPSSKLSEVMEDRD---YEM--- 270 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~--- 270 (843)
=+-++|.|..|+|||||+.++..... +.+=+.++++-+.+. ..+.++..++...=......--....+. ...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999876311 112246777777664 3456666666432111100000011111 110
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCCCC
Q 003154 271 RKIIHLHGYL---MSKRYLIVLDDVWT 294 (843)
Q Consensus 271 ~~~~~l~~~l---~~kr~LlVlDdvw~ 294 (843)
.-|-.+.+++ +++++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 0114455555 46899999999954
No 485
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=91.72 E-value=1.2 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.++.-
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 486
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.36 Score=54.24 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=69.9
Q ss_pred eecchHHHHHHHHHHHcCC-----------CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHH
Q 003154 177 IVGLDDKMEELLDHLIEGP-----------PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSL 245 (843)
Q Consensus 177 ~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 245 (843)
+-|.++-..++.-.+..+- ....=|-.||.+|+|||-||++|+| +.+-.| +.|-.+ ++
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----EL 581 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----EL 581 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HH
Confidence 3445666666665555431 2345577899999999999999999 444444 333322 11
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc-------h------hhHHHHHhcCCC--CC
Q 003154 246 LDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN-------D------VWEFIQEILPDN--LN 310 (843)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-------~------~~~~l~~~~~~~--~~ 310 (843)
+ ...-+ .++..+. ...++.-..-.+.|.+|.++.. . ...++..-+... ..
T Consensus 582 l----NkYVG---------ESErAVR--~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 582 L----NKYVG---------ESERAVR--QVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR 646 (802)
T ss_pred H----HHHhh---------hHHHHHH--HHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc
Confidence 1 11111 1122222 3333333467899999999632 1 345565555532 34
Q ss_pred CcEEEEEecchhhhh
Q 003154 311 GSRVLTTVSNIEILT 325 (843)
Q Consensus 311 gs~iiiTtR~~~v~~ 325 (843)
|--||-.|..+++-.
T Consensus 647 gV~viaATNRPDiID 661 (802)
T KOG0733|consen 647 GVYVIAATNRPDIID 661 (802)
T ss_pred ceEEEeecCCCcccc
Confidence 556666677777665
No 487
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.67 Score=49.99 Aligned_cols=101 Identities=16% Similarity=0.045 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcccc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVM 263 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 263 (843)
..++-..|..+-=.-.+|.|=|-+|||||||.-++.. +....- .+++|+-.++ ..++ +--+++|+...+. +.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~--l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNN--LY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccc--eE
Confidence 4444444544423357899999999999999999988 344333 6777654444 3322 2335556542211 22
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 264 EDRDYEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 264 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
-..+..+. +.+...-+.+.-++|+|-+.+
T Consensus 151 l~aEt~~e--~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLE--DIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHH--HHHHHHHhcCCCEEEEeccce
Confidence 22223333 223333346778999999843
No 488
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.71 E-value=1.1 Score=43.65 Aligned_cols=120 Identities=17% Similarity=-0.016 Sum_probs=63.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC---CCChHHHHHHHH--HHhCCCCCCccccc-c-----
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI---LYQPDSLLDNII--KFLMPSSKLSEVME-D----- 265 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~~l~~~~~~~~~~~-~----- 265 (843)
....|-|+|-.|-||||.|..+.-. ...+=-.+..+-.-+ .......+..+- .-....... .+.. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~-~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF-TWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC-cccCCCcHHHH
Confidence 3568999999999999999777662 222211222232211 223333333310 000000000 0000 0
Q ss_pred -chHHHHHHHHHHHHhCC-CeEEEEEcCCCCc-----hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 266 -RDYEMRKIIHLHGYLMS-KRYLIVLDDVWTN-----DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 266 -~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
...+.. +..++.+.. +-=|||||.+-.. -+.+.+...+.....+.-||+|-|+.
T Consensus 98 ~~~~~~~--~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGW--EEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHH--HHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111223 444555544 4459999999543 34566666666666678999999975
No 489
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.66 E-value=1 Score=51.25 Aligned_cols=131 Identities=15% Similarity=0.249 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCChHHH-HHHHHhcCccccccCCeeEEEEeCCCCChH--HHHHHHHHHhCCCCC--C
Q 003154 185 EELLDHLIEGPPQLSVVAVLDSVGLDKTA-FAAEAYNSNYVKHYFDCKAWVPVSILYQPD--SLLDNIIKFLMPSSK--L 259 (843)
Q Consensus 185 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~--~ 259 (843)
+++++.+.+ -.||.|+|-.|.|||| |+|.+|.+- |.-.-.+.+.|+..+. .+.+.+.+.++..-+ .
T Consensus 362 ~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 362 DQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 444444443 5699999999999998 889898852 2222255566665443 556677777754211 0
Q ss_pred c---cccc-cchHH----HHHHHHHHHHhC----CCeEEEEEcCCCCch----hh-HHHHHhcCCCCCCcEEEEEecchh
Q 003154 260 S---EVME-DRDYE----MRKIIHLHGYLM----SKRYLIVLDDVWTND----VW-EFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 260 ~---~~~~-~~~~~----~~~~~~l~~~l~----~kr~LlVlDdvw~~~----~~-~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
. .++. .+.+. +..--.|++.|+ +|=-.||+|...+.. -+ .-+...+. ....-|+||||-..+
T Consensus 433 GYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 433 GYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSATMD 511 (1042)
T ss_pred ceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeecccc
Confidence 0 0000 00000 000023455554 455688999987652 22 22222222 223579999988765
Q ss_pred hhh
Q 003154 323 ILT 325 (843)
Q Consensus 323 v~~ 325 (843)
.-.
T Consensus 512 a~k 514 (1042)
T KOG0924|consen 512 AQK 514 (1042)
T ss_pred HHH
Confidence 543
No 490
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.65 E-value=2.1 Score=50.25 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCeeEEE-------EeCCCCCh------------------------------
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWV-------PVSILYQP------------------------------ 242 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-------~~s~~~~~------------------------------ 242 (843)
+++|+|..|+|||||.+.+.. .-....+.+.+ .+.|.+..
T Consensus 35 ~~~iiG~NGsGKSTLlk~i~G---~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 111 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAG---VDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAA 111 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhC---CCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred ------------------------------HHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCC
Q 003154 243 ------------------------------DSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDV 292 (843)
Q Consensus 243 ------------------------------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 292 (843)
.+-...+++.++...........+..+.+|....+-.+.+.+ +++||.-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~-vlLLDEP 190 (556)
T PRK11819 112 YAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPD-MLLLDEP 190 (556)
T ss_pred hccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCC-EEEEcCC
Q ss_pred CCc---hhhHHHHHhcCCCCCCcEEEEEecchhhhh
Q 003154 293 WTN---DVWEFIQEILPDNLNGSRVLTTVSNIEILT 325 (843)
Q Consensus 293 w~~---~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~ 325 (843)
-+. ..-..+...+.... + .||++|-+.+.+.
T Consensus 191 t~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~ 224 (556)
T PRK11819 191 TNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLD 224 (556)
T ss_pred CCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHH
No 491
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.65 E-value=0.46 Score=48.85 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=37.8
Q ss_pred HHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHH
Q 003154 189 DHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDN 248 (843)
Q Consensus 189 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 248 (843)
++|..+=..-.++.|.|.+|+|||++|.++... .. ..=..++||+... +..++.+.
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 344444456789999999999999999886542 12 2345688887654 44455544
No 492
>PLN02200 adenylate kinase family protein
Probab=91.64 E-value=0.14 Score=52.38 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 493
>PRK04182 cytidylate kinase; Provisional
Probab=91.63 E-value=0.13 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 494
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=91.61 E-value=0.44 Score=53.31 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-..++|+|..|+|||||++.+...
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999873
No 495
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=91.61 E-value=0.6 Score=51.87 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-..++|+|..|+|||||.+.+.+.
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCC
Confidence 3567999999999999999999873
No 496
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.60 E-value=0.15 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-|+++|.+|+|||||+..+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 497
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.56 E-value=0.16 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHh
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAY 219 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~ 219 (843)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 498
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.54 E-value=0.24 Score=53.48 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=36.0
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+||.++.+..++-.+.++. ..-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 468999999988877666543 44577999999999999999975
No 499
>PLN02348 phosphoribulokinase
Probab=91.52 E-value=0.19 Score=54.54 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 195 PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 195 ~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+..-+|||.|..|.||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999988
No 500
>PRK13409 putative ATPase RIL; Provisional
Probab=91.52 E-value=1.5 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
=.+++|+|..|+|||||.+.+..-
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
Done!