Query 003154
Match_columns 843
No_of_seqs 530 out of 4676
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-45 9.2E-50 424.7 25.5 283 178-476 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 7.4E-37 2.5E-41 391.3 24.2 285 171-474 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 4.4E-36 1.5E-40 350.3 15.5 269 175-467 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.3E-32 7.8E-37 321.2 22.4 281 171-471 120-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 1E-25 3.5E-30 272.4 16.0 195 490-692 294-524 (768)
6 2id5_A Lingo-1, leucine rich r 99.9 2.2E-24 7.6E-29 246.5 22.9 305 500-818 20-331 (477)
7 3o6n_A APL1; leucine-rich repe 99.9 3.3E-24 1.1E-28 238.3 23.1 301 490-818 45-350 (390)
8 3vq2_A TLR4, TOLL-like recepto 99.9 3.9E-24 1.3E-28 252.2 23.2 132 488-624 30-167 (606)
9 3oja_B Anopheles plasmodium-re 99.9 3.9E-24 1.3E-28 251.0 22.6 286 511-818 50-356 (597)
10 2z7x_B TOLL-like receptor 1, v 99.9 7.4E-24 2.5E-28 244.9 24.0 103 710-818 374-479 (520)
11 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-23 4.9E-28 244.8 24.3 309 493-818 34-508 (562)
12 4eco_A Uncharacterized protein 99.9 6.2E-24 2.1E-28 250.8 21.1 292 511-818 248-598 (636)
13 3v47_A TOLL-like receptor 5B a 99.9 1.2E-23 4.1E-28 238.8 22.2 321 488-818 28-406 (455)
14 4ecn_A Leucine-rich repeat pro 99.9 1.7E-23 5.9E-28 251.5 22.4 292 511-818 490-838 (876)
15 3rgz_A Protein brassinosteroid 99.9 4.3E-24 1.5E-28 258.1 17.3 301 539-843 293-766 (768)
16 4fmz_A Internalin; leucine ric 99.9 5.9E-23 2E-27 224.4 24.4 300 489-818 43-344 (347)
17 2z63_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 242.7 22.9 142 675-818 366-529 (570)
18 4ecn_A Leucine-rich repeat pro 99.9 4.6E-23 1.6E-27 247.8 23.5 294 489-797 490-841 (876)
19 3t6q_A CD180 antigen; protein- 99.9 7.6E-23 2.6E-27 241.1 23.7 272 541-818 255-558 (606)
20 3t6q_A CD180 antigen; protein- 99.9 5.4E-23 1.9E-27 242.4 20.8 321 488-818 31-436 (606)
21 1o6v_A Internalin A; bacterial 99.9 3.1E-22 1.1E-26 227.8 25.8 302 490-818 46-386 (466)
22 1o6v_A Internalin A; bacterial 99.9 3.1E-22 1.1E-26 227.7 25.5 258 511-794 45-320 (466)
23 4eco_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 243.2 18.7 303 506-818 198-577 (636)
24 4fmz_A Internalin; leucine ric 99.9 4E-22 1.4E-26 217.8 23.6 278 511-818 43-322 (347)
25 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-22 4.1E-27 239.4 20.8 135 500-638 20-160 (606)
26 3v47_A TOLL-like receptor 5B a 99.9 1.9E-22 6.4E-27 229.0 20.9 305 504-818 23-382 (455)
27 4fcg_A Uncharacterized protein 99.9 1.6E-22 5.5E-27 218.6 17.7 233 538-817 79-311 (328)
28 1ziw_A TOLL-like receptor 3; i 99.9 4.4E-22 1.5E-26 237.9 23.4 323 488-818 23-441 (680)
29 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-22 8.3E-27 233.9 20.1 316 490-818 26-421 (549)
30 3o6n_A APL1; leucine-rich repe 99.9 2.8E-22 9.5E-27 222.7 19.4 284 508-818 40-329 (390)
31 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-21 7.9E-26 236.7 27.6 316 488-818 22-437 (844)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-21 5.8E-26 220.2 23.6 261 536-818 60-350 (457)
33 2z63_A TOLL-like receptor 4, v 99.9 2.3E-22 7.9E-27 235.2 16.6 133 488-625 26-164 (570)
34 2z81_A CD282 antigen, TOLL-lik 99.9 7.6E-22 2.6E-26 229.7 20.9 318 489-818 49-508 (549)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-21 3.8E-26 239.5 22.6 307 501-818 14-373 (844)
36 3oja_B Anopheles plasmodium-re 99.9 6.3E-22 2.1E-26 232.3 19.4 270 538-818 49-335 (597)
37 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.4E-26 233.9 22.3 309 502-818 15-364 (680)
38 2id5_A Lingo-1, leucine rich r 99.9 1.3E-21 4.5E-26 223.4 19.5 294 488-796 30-333 (477)
39 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-22 5.7E-27 217.1 10.6 248 512-818 50-302 (313)
40 2z7x_B TOLL-like receptor 1, v 99.9 4.4E-21 1.5E-25 221.7 23.0 316 493-818 3-455 (520)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-21 1.4E-25 223.9 22.2 291 511-818 30-484 (562)
42 3bz5_A Internalin-J, INLJ; leu 99.9 5.1E-21 1.7E-25 216.3 21.2 260 535-818 37-329 (457)
43 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.7E-25 204.8 22.5 246 540-819 52-305 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-21 2.9E-25 205.8 20.2 83 540-624 54-137 (332)
45 4g8a_A TOLL-like receptor 4; l 99.9 1.7E-20 6E-25 222.0 23.3 132 488-624 50-187 (635)
46 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-20 7.5E-25 202.6 18.8 286 491-818 34-331 (332)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-21 9E-26 207.8 11.3 247 490-798 50-306 (313)
48 1xku_A Decorin; proteoglycan, 99.8 7.7E-20 2.6E-24 198.1 21.4 286 491-817 32-329 (330)
49 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-20 1.3E-24 219.2 19.1 107 710-818 469-578 (635)
50 1jl5_A Outer protein YOPM; leu 99.8 1.9E-19 6.4E-24 203.3 23.5 290 489-818 90-407 (454)
51 4fcg_A Uncharacterized protein 99.8 4.1E-20 1.4E-24 199.7 15.2 223 511-794 80-312 (328)
52 2z80_A TOLL-like receptor 2, v 99.8 5.2E-20 1.8E-24 201.4 15.2 249 541-818 53-312 (353)
53 2z66_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 194.9 16.2 225 540-818 28-259 (306)
54 3zyi_A Leucine-rich repeat-con 99.8 6.7E-19 2.3E-23 199.3 20.7 222 540-818 75-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.8 2E-18 6.9E-23 200.9 24.9 255 491-818 41-295 (622)
56 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.1E-24 198.5 13.2 265 500-798 40-316 (353)
57 3zyj_A Leucine-rich repeat-con 99.8 1.2E-18 4.1E-23 196.6 21.4 222 540-818 64-290 (440)
58 2z66_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 191.0 15.2 236 500-770 16-259 (306)
59 3o53_A Protein LRIM1, AGAP0063 99.8 6.7E-20 2.3E-24 197.3 8.9 250 531-798 25-277 (317)
60 3zyj_A Leucine-rich repeat-con 99.8 1.7E-18 5.9E-23 195.3 18.5 242 493-770 46-290 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 2.1E-18 7.1E-23 195.3 18.4 242 493-770 57-301 (452)
62 1ozn_A Reticulon 4 receptor; N 99.8 1E-18 3.6E-23 184.9 14.1 248 539-817 31-284 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-19 8.8E-24 192.7 9.2 237 540-818 10-248 (317)
64 3oja_A Leucine-rich immune mol 99.8 5.5E-19 1.9E-23 201.4 10.4 236 538-791 32-270 (487)
65 3oja_A Leucine-rich immune mol 99.8 7.1E-19 2.4E-23 200.5 11.2 222 554-818 21-248 (487)
66 1z7x_W Ribonuclease inhibitor; 99.8 2.9E-20 9.9E-25 211.3 -0.8 37 782-818 369-409 (461)
67 1wwl_A Monocyte differentiatio 99.8 6.4E-20 2.2E-24 196.9 1.0 220 542-818 65-307 (312)
68 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-18 1.3E-22 180.7 13.8 221 494-748 15-239 (285)
69 1jl5_A Outer protein YOPM; leu 99.8 3.3E-17 1.1E-21 184.8 21.9 288 489-818 110-427 (454)
70 1z7x_W Ribonuclease inhibitor; 99.7 6E-20 2.1E-24 208.7 -1.5 320 489-818 2-381 (461)
71 3ogk_B Coronatine-insensitive 99.7 7.9E-19 2.7E-23 206.1 6.3 321 490-818 112-524 (592)
72 3g06_A SSPH2 (leucine-rich rep 99.7 2.6E-16 8.9E-21 183.1 22.6 232 541-818 41-272 (622)
73 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4E-22 179.3 9.0 231 506-794 57-307 (312)
74 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.5E-21 168.2 16.6 200 536-770 6-206 (290)
75 3ogk_B Coronatine-insensitive 99.7 5.7E-18 1.9E-22 198.8 5.8 303 511-817 191-548 (592)
76 1h6u_A Internalin H; cell adhe 99.7 1.4E-16 4.7E-21 170.4 15.8 190 538-770 39-228 (308)
77 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.2E-21 168.1 15.0 81 541-621 29-111 (276)
78 2o6q_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 162.6 17.7 198 541-770 17-216 (270)
79 3rfs_A Internalin B, repeat mo 99.7 1.9E-16 6.6E-21 166.2 14.3 209 537-808 38-247 (272)
80 2p1m_B Transport inhibitor res 99.7 3.1E-17 1.1E-21 192.6 7.4 321 490-819 105-518 (594)
81 2ast_B S-phase kinase-associat 99.7 5.1E-17 1.7E-21 176.3 6.8 241 534-804 62-314 (336)
82 2z62_A TOLL-like receptor 4, v 99.7 5.6E-16 1.9E-20 163.0 14.3 122 544-691 11-133 (276)
83 2ast_B S-phase kinase-associat 99.7 2.4E-17 8.1E-22 178.9 3.5 245 539-818 46-304 (336)
84 1p9a_G Platelet glycoprotein I 99.7 1.1E-15 3.9E-20 161.7 16.4 200 558-818 5-206 (290)
85 2o6q_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 158.0 17.6 179 540-747 37-218 (270)
86 3rfs_A Internalin B, repeat mo 99.6 4.1E-16 1.4E-20 163.7 11.9 196 511-749 40-237 (272)
87 1h6u_A Internalin H; cell adhe 99.6 1.7E-15 5.8E-20 161.9 16.3 192 511-748 40-231 (308)
88 2xwt_C Thyrotropin receptor; s 99.6 5.2E-16 1.8E-20 159.5 11.1 176 541-747 32-218 (239)
89 2ca6_A RAN GTPase-activating p 99.6 2.3E-17 7.8E-22 182.7 -0.2 240 534-799 26-319 (386)
90 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.8E-20 157.0 11.4 209 551-818 22-237 (239)
91 2ca6_A RAN GTPase-activating p 99.6 1.1E-17 3.7E-22 185.3 -4.3 255 541-818 10-314 (386)
92 4ay9_X Follicle-stimulating ho 99.6 5.2E-15 1.8E-19 161.3 16.1 240 543-816 12-255 (350)
93 2p1m_B Transport inhibitor res 99.6 4.2E-17 1.4E-21 191.5 -3.3 301 511-817 183-541 (594)
94 3goz_A Leucine-rich repeat-con 99.6 1.5E-16 5.3E-21 174.3 -0.5 243 531-797 13-298 (362)
95 3goz_A Leucine-rich repeat-con 99.6 3E-15 1E-19 164.0 9.5 236 511-770 21-295 (362)
96 3m19_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 148.4 15.6 176 540-746 14-191 (251)
97 1h6t_A Internalin B; cell adhe 99.6 1.9E-14 6.6E-19 152.3 13.7 172 537-748 43-214 (291)
98 3qfl_A MLA10; coiled-coil, (CC 99.5 6.2E-15 2.1E-19 130.8 7.9 82 3-99 1-84 (115)
99 1m9s_A Internalin B; cell inva 99.5 2.5E-14 8.6E-19 166.2 14.2 174 536-749 39-212 (605)
100 4glp_A Monocyte differentiatio 99.5 8.3E-15 2.8E-19 156.8 9.3 84 539-622 90-181 (310)
101 4glp_A Monocyte differentiatio 99.5 1E-14 3.5E-19 156.1 7.7 225 490-770 64-305 (310)
102 3m19_A Variable lymphocyte rec 99.5 1E-13 3.6E-18 143.4 14.0 113 506-622 29-143 (251)
103 4ay9_X Follicle-stimulating ho 99.5 8.1E-14 2.8E-18 151.8 13.8 219 540-792 30-255 (350)
104 3cvr_A Invasion plasmid antige 99.5 4.4E-14 1.5E-18 162.4 11.6 76 540-624 59-134 (571)
105 1m9s_A Internalin B; cell inva 99.5 2.6E-14 8.9E-19 166.1 9.6 188 540-770 21-208 (605)
106 2o6s_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 140.5 10.2 161 540-735 28-190 (208)
107 1w5s_A Origin recognition comp 99.5 3.3E-13 1.1E-17 150.5 16.9 281 174-463 21-387 (412)
108 2o6s_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 136.8 13.5 180 543-784 10-190 (208)
109 1h6t_A Internalin B; cell adhe 99.5 1.9E-13 6.4E-18 144.7 13.5 172 511-726 45-216 (291)
110 1xeu_A Internalin C; cellular 99.5 6.7E-14 2.3E-18 145.8 8.4 168 541-749 20-187 (263)
111 4b8c_D Glucose-repressible alc 99.4 3E-14 1E-18 169.8 4.4 163 490-679 173-337 (727)
112 4ezg_A Putative uncharacterize 99.4 6E-13 2.1E-17 132.1 10.5 153 537-747 41-194 (197)
113 1dce_A Protein (RAB geranylger 99.4 1.7E-14 5.8E-19 166.7 -1.4 201 560-814 346-567 (567)
114 3cvr_A Invasion plasmid antige 99.4 1.4E-12 4.7E-17 149.9 14.4 179 512-748 59-244 (571)
115 4ezg_A Putative uncharacterize 99.4 4.4E-13 1.5E-17 133.1 7.7 146 511-692 43-191 (197)
116 2xot_A Amphoterin-induced prot 99.4 5.8E-13 2E-17 145.6 9.0 174 543-747 21-202 (361)
117 1dce_A Protein (RAB geranylger 99.4 4.4E-15 1.5E-19 171.5 -8.4 178 537-747 346-546 (567)
118 2v9t_B SLIT homolog 2 protein 99.4 2.4E-12 8.1E-17 130.2 12.3 151 543-747 14-165 (220)
119 1xeu_A Internalin C; cellular 99.4 1.8E-12 6.2E-17 134.9 11.3 153 535-726 36-188 (263)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 3.2E-12 1.1E-16 129.2 11.7 152 543-748 14-167 (220)
121 3e6j_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 128.3 13.2 144 495-665 24-168 (229)
122 2v9t_B SLIT homolog 2 protein 99.3 4.3E-12 1.5E-16 128.2 11.3 140 500-665 20-161 (220)
123 2qen_A Walker-type ATPase; unk 99.3 1.5E-11 5E-16 133.8 15.5 267 173-467 10-348 (350)
124 3e6j_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 125.7 13.7 151 542-747 21-172 (229)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 9.1E-12 3.1E-16 125.8 11.1 145 494-665 15-162 (220)
126 2xot_A Amphoterin-induced prot 99.3 7.3E-12 2.5E-16 136.9 9.3 126 494-624 22-150 (361)
127 2je0_A Acidic leucine-rich nuc 99.3 7E-12 2.4E-16 118.2 7.9 128 538-690 15-148 (149)
128 2ell_A Acidic leucine-rich nuc 99.2 1.1E-11 3.7E-16 119.5 8.8 129 539-692 23-157 (168)
129 2fna_A Conserved hypothetical 99.2 9.3E-11 3.2E-15 127.7 16.2 265 173-466 11-355 (357)
130 1fnn_A CDC6P, cell division co 99.2 1.5E-09 5E-14 119.8 23.1 266 175-448 17-353 (389)
131 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.1E-16 114.5 7.5 109 511-624 16-127 (149)
132 2v1u_A Cell division control p 99.2 1.1E-09 3.8E-14 120.6 21.7 267 174-448 18-353 (387)
133 2qby_B CDC6 homolog 3, cell di 99.2 6.5E-10 2.2E-14 122.5 19.2 265 175-448 20-341 (384)
134 1a9n_A U2A', U2A'; complex (nu 99.2 4.6E-11 1.6E-15 116.0 8.4 106 511-622 18-125 (176)
135 4b8c_D Glucose-repressible alc 99.2 4E-12 1.4E-16 151.4 0.8 151 511-693 172-327 (727)
136 1w8a_A SLIT protein; signaling 99.1 8E-11 2.7E-15 116.1 9.6 124 543-692 11-136 (192)
137 2ell_A Acidic leucine-rich nuc 99.1 8.4E-11 2.9E-15 113.2 9.4 124 490-621 24-158 (168)
138 2o6r_A Variable lymphocyte rec 99.1 1.3E-10 4.6E-15 112.8 10.4 126 494-624 11-138 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.1 6.8E-11 2.3E-15 114.9 8.1 131 536-693 15-151 (176)
140 1ds9_A Outer arm dynein; leuci 99.1 8.8E-12 3E-16 123.7 1.2 130 533-688 41-180 (198)
141 1w8a_A SLIT protein; signaling 99.1 9.2E-11 3.1E-15 115.7 8.5 127 493-624 11-140 (192)
142 2wfh_A SLIT homolog 2 protein 99.1 2.4E-10 8.3E-15 112.6 11.2 78 543-623 13-91 (193)
143 2wfh_A SLIT homolog 2 protein 99.1 2.1E-10 7.1E-15 113.1 10.7 124 495-624 15-140 (193)
144 3sb4_A Hypothetical leucine ri 99.0 2.4E-10 8.2E-15 123.1 8.4 283 511-814 24-328 (329)
145 2qby_A CDC6 homolog 1, cell di 99.0 3.1E-09 1E-13 117.0 16.6 266 174-447 19-349 (386)
146 2o6r_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 106.0 11.2 78 543-622 10-88 (177)
147 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.8E-14 105.2 9.8 85 540-624 33-119 (174)
148 3g39_A Variable lymphocyte rec 98.9 2.7E-09 9.3E-14 102.7 9.6 85 540-624 30-116 (170)
149 1ds9_A Outer arm dynein; leuci 98.9 2.5E-10 8.4E-15 113.2 0.1 121 542-690 25-148 (198)
150 2r9u_A Variable lymphocyte rec 98.8 8.4E-09 2.9E-13 99.7 9.4 113 494-611 16-129 (174)
151 3g39_A Variable lymphocyte rec 98.8 1.5E-08 5.3E-13 97.4 9.3 110 493-607 12-122 (170)
152 4fdw_A Leucine rich hypothetic 98.7 3E-07 1E-11 101.2 19.9 252 531-827 127-387 (401)
153 1njg_A DNA polymerase III subu 98.6 1.5E-07 5E-12 96.0 12.2 175 175-362 23-229 (250)
154 2ifg_A High affinity nerve gro 98.6 6.3E-08 2.2E-12 104.9 8.1 89 536-624 27-117 (347)
155 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.5E-12 101.5 10.4 224 531-766 84-328 (329)
156 2chg_A Replication factor C sm 98.5 1.6E-07 5.5E-12 94.2 9.1 117 175-322 17-143 (226)
157 3un9_A NLR family member X1; l 98.5 2.7E-08 9.2E-13 108.5 1.1 16 710-725 239-254 (372)
158 2ifg_A High affinity nerve gro 98.4 2.9E-07 9.9E-12 99.6 8.9 80 544-624 12-94 (347)
159 4fdw_A Leucine rich hypothetic 98.4 3.7E-06 1.3E-10 92.5 15.9 98 512-618 135-234 (401)
160 4fs7_A Uncharacterized protein 98.3 9.7E-06 3.3E-10 89.2 17.9 99 710-817 276-376 (394)
161 3un9_A NLR family member X1; l 98.3 5.4E-08 1.9E-12 106.1 -0.5 63 539-601 71-140 (372)
162 2ra8_A Uncharacterized protein 98.3 2.3E-07 7.8E-12 100.3 3.6 138 674-818 164-318 (362)
163 1hqc_A RUVB; extended AAA-ATPa 98.3 4.4E-07 1.5E-11 97.1 4.8 47 174-220 11-60 (324)
164 1sxj_B Activator 1 37 kDa subu 98.2 1.1E-06 3.7E-11 93.9 7.2 123 175-322 21-148 (323)
165 3te6_A Regulatory protein SIR3 98.2 5.1E-06 1.7E-10 87.3 10.6 113 176-295 21-144 (318)
166 1jbk_A CLPB protein; beta barr 98.1 2.6E-06 8.8E-11 83.1 6.1 46 174-221 21-66 (195)
167 1iqp_A RFCS; clamp loader, ext 98.1 3.9E-06 1.3E-10 89.7 7.7 117 175-322 25-151 (327)
168 4fs7_A Uncharacterized protein 98.0 7.1E-05 2.4E-09 82.2 16.5 98 710-816 253-352 (394)
169 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 80.4 4.1 87 711-797 62-153 (176)
170 2ra8_A Uncharacterized protein 98.0 3.7E-06 1.3E-10 90.8 5.2 83 732-818 250-341 (362)
171 2p65_A Hypothetical protein PF 97.9 5.2E-06 1.8E-10 80.5 4.2 46 174-221 21-66 (187)
172 1io0_A Tropomodulin; LRR prote 97.9 4.7E-06 1.6E-10 81.0 3.0 91 532-623 28-136 (185)
173 2w58_A DNAI, primosome compone 97.9 1.5E-05 5.2E-10 78.6 6.7 121 176-320 26-158 (202)
174 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.4E-10 76.2 5.1 84 734-818 61-150 (176)
175 1io0_A Tropomodulin; LRR prote 97.8 5.9E-06 2E-10 80.3 2.8 112 511-623 35-164 (185)
176 3h4m_A Proteasome-activating n 97.8 2.1E-05 7.4E-10 82.1 6.3 47 174-220 16-73 (285)
177 3ec2_A DNA replication protein 97.7 2.8E-05 9.6E-10 75.1 6.0 119 180-321 19-143 (180)
178 3n70_A Transport activator; si 97.7 3.3E-05 1.1E-09 71.6 6.0 46 176-221 2-47 (145)
179 4gt6_A Cell surface protein; l 97.7 0.0013 4.3E-08 72.1 19.5 285 513-820 65-370 (394)
180 2chq_A Replication factor C sm 97.7 2.6E-05 8.9E-10 82.9 5.0 117 175-322 17-143 (319)
181 3rw6_A Nuclear RNA export fact 97.7 4E-05 1.4E-09 78.4 6.1 80 535-616 165-257 (267)
182 1jr3_A DNA polymerase III subu 97.6 0.00018 6.1E-09 78.3 11.2 46 175-221 16-61 (373)
183 3syl_A Protein CBBX; photosynt 97.6 7.8E-05 2.7E-09 78.8 7.4 124 176-321 32-179 (309)
184 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00016 5.4E-09 74.4 8.0 46 175-220 6-61 (262)
185 2z4s_A Chromosomal replication 97.5 0.00012 4.3E-09 81.2 7.5 122 176-321 106-237 (440)
186 3pfi_A Holliday junction ATP-d 97.5 0.00089 3.1E-08 71.6 13.6 47 174-220 28-77 (338)
187 3rw6_A Nuclear RNA export fact 97.4 3E-05 1E-09 79.4 1.5 86 537-624 138-234 (267)
188 3u61_B DNA polymerase accessor 97.4 0.00025 8.4E-09 75.6 8.6 120 174-322 25-147 (324)
189 3eie_A Vacuolar protein sortin 97.4 0.00019 6.4E-09 76.4 7.6 46 175-220 18-73 (322)
190 3co5_A Putative two-component 97.4 0.00013 4.4E-09 67.4 4.8 47 175-221 4-50 (143)
191 1d2n_A N-ethylmaleimide-sensit 97.4 0.00046 1.6E-08 71.3 9.3 47 174-220 32-86 (272)
192 1sxj_D Activator 1 41 kDa subu 97.3 0.00024 8.1E-09 76.6 7.4 135 174-321 36-173 (353)
193 3bos_A Putative DNA replicatio 97.3 0.00011 3.9E-09 74.2 4.2 59 175-237 28-89 (242)
194 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00086 2.9E-08 71.1 11.2 46 175-220 12-67 (322)
195 4gt6_A Cell surface protein; l 97.2 0.0039 1.3E-07 68.1 15.7 303 492-817 66-388 (394)
196 3cf0_A Transitional endoplasmi 97.2 0.0017 5.7E-08 68.2 12.2 46 175-220 15-71 (301)
197 3pvs_A Replication-associated 97.2 0.00087 3E-08 74.3 10.1 45 174-220 25-72 (447)
198 3d8b_A Fidgetin-like protein 1 97.2 0.00029 9.9E-09 76.0 6.1 46 175-220 84-139 (357)
199 3uk6_A RUVB-like 2; hexameric 97.2 0.0025 8.5E-08 69.0 13.4 47 175-221 44-93 (368)
200 1l8q_A Chromosomal replication 97.2 0.00045 1.5E-08 73.5 7.2 114 184-321 23-141 (324)
201 1sxj_E Activator 1 40 kDa subu 97.2 0.00077 2.6E-08 72.6 9.1 44 175-220 14-58 (354)
202 1sxj_A Activator 1 95 kDa subu 97.2 0.00065 2.2E-08 77.2 8.6 48 174-221 38-100 (516)
203 1lv7_A FTSH; alpha/beta domain 97.1 0.0011 3.6E-08 67.9 8.9 46 175-220 12-67 (257)
204 2zan_A Vacuolar protein sortin 97.1 0.0019 6.5E-08 71.7 11.3 46 175-220 134-189 (444)
205 2qp9_X Vacuolar protein sortin 97.1 0.00062 2.1E-08 73.3 7.0 47 175-221 51-107 (355)
206 3b9p_A CG5977-PA, isoform A; A 97.1 0.0017 5.7E-08 68.1 10.0 46 175-220 21-76 (297)
207 3vfd_A Spastin; ATPase, microt 97.0 0.00082 2.8E-08 73.4 7.6 47 174-220 114-170 (389)
208 1sxj_C Activator 1 40 kDa subu 96.9 0.0015 5E-08 70.0 8.4 44 175-220 25-68 (340)
209 2qgz_A Helicase loader, putati 96.9 0.00037 1.2E-08 73.4 2.8 54 181-236 134-189 (308)
210 4fcw_A Chaperone protein CLPB; 96.9 0.00095 3.2E-08 70.4 5.9 62 175-238 17-85 (311)
211 4h09_A Hypothetical leucine ri 96.8 0.019 6.5E-07 62.2 16.2 100 710-815 240-341 (379)
212 2bjv_A PSP operon transcriptio 96.8 0.0018 6.3E-08 66.5 7.6 47 175-221 6-52 (265)
213 3pxg_A Negative regulator of g 96.8 0.002 6.7E-08 72.1 8.1 44 175-220 180-223 (468)
214 1qvr_A CLPB protein; coiled co 96.8 0.0014 4.6E-08 79.4 7.1 46 174-221 169-214 (854)
215 2ce7_A Cell division protein F 96.7 0.0022 7.5E-08 71.2 7.2 46 175-220 16-71 (476)
216 2r62_A Cell division protease 96.7 0.00037 1.3E-08 71.9 0.8 47 175-221 11-67 (268)
217 2gno_A DNA polymerase III, gam 96.6 0.0091 3.1E-07 62.5 11.2 117 179-321 1-122 (305)
218 1ojl_A Transcriptional regulat 96.6 0.0049 1.7E-07 64.6 9.1 46 175-220 2-47 (304)
219 3hu3_A Transitional endoplasmi 96.6 0.0019 6.7E-08 72.2 5.9 46 175-220 204-260 (489)
220 4h09_A Hypothetical leucine ri 96.6 0.088 3E-06 56.8 19.2 92 710-807 263-356 (379)
221 4b4t_L 26S protease subunit RP 96.5 0.0052 1.8E-07 67.2 8.6 46 175-220 181-237 (437)
222 1a5t_A Delta prime, HOLB; zinc 96.5 0.019 6.4E-07 61.1 12.8 40 181-221 8-47 (334)
223 1r6b_X CLPA protein; AAA+, N-t 96.4 0.017 5.7E-07 69.0 13.4 45 174-220 185-229 (758)
224 2cvh_A DNA repair and recombin 96.3 0.013 4.5E-07 57.8 10.0 90 197-294 19-116 (220)
225 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0027 9.3E-08 65.9 4.9 69 198-294 123-193 (331)
226 3pxi_A Negative regulator of g 96.1 0.0083 2.9E-07 71.6 8.4 45 175-221 180-224 (758)
227 3rfe_A Platelet glycoprotein I 96.1 0.0077 2.6E-07 54.2 6.0 55 543-599 11-67 (130)
228 4b4t_I 26S protease regulatory 96.1 0.0098 3.3E-07 64.2 7.7 46 175-220 182-238 (437)
229 4b4t_J 26S protease regulatory 96.0 0.0052 1.8E-07 66.1 5.4 46 175-220 148-204 (405)
230 4b4t_K 26S protease regulatory 96.0 0.007 2.4E-07 66.0 6.1 46 175-220 172-228 (428)
231 2c9o_A RUVB-like 1; hexameric 95.9 0.014 4.7E-07 65.0 8.6 47 175-221 37-86 (456)
232 4b4t_H 26S protease regulatory 95.9 0.0066 2.2E-07 66.2 5.6 46 175-220 209-265 (467)
233 3t15_A Ribulose bisphosphate c 95.8 0.0056 1.9E-07 63.8 4.5 24 197-220 35-58 (293)
234 3pxi_A Negative regulator of g 95.8 0.015 5.2E-07 69.3 8.6 46 175-220 491-543 (758)
235 4b4t_M 26S protease regulatory 95.7 0.0074 2.5E-07 65.9 5.0 46 175-220 181-237 (434)
236 2dhr_A FTSH; AAA+ protein, hex 95.7 0.027 9.3E-07 62.9 9.6 48 174-221 30-87 (499)
237 3hr8_A Protein RECA; alpha and 95.6 0.024 8.2E-07 60.3 8.1 89 197-294 60-150 (356)
238 2x8a_A Nuclear valosin-contain 95.5 0.025 8.4E-07 58.2 7.9 45 175-220 10-66 (274)
239 2cbz_A Multidrug resistance-as 95.5 0.16 5.4E-06 50.8 13.5 24 198-221 31-54 (237)
240 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.022 7.6E-07 56.7 7.2 117 198-321 23-168 (235)
241 1in4_A RUVB, holliday junction 95.4 0.0083 2.9E-07 63.8 3.8 46 175-220 25-73 (334)
242 3cf2_A TER ATPase, transitiona 95.3 0.012 4.2E-07 69.2 5.2 94 175-294 204-308 (806)
243 1n0w_A DNA repair protein RAD5 95.3 0.048 1.7E-06 54.6 9.1 97 197-294 23-130 (243)
244 1ypw_A Transitional endoplasmi 95.3 0.0095 3.3E-07 71.1 4.3 46 175-220 204-260 (806)
245 1rz3_A Hypothetical protein rb 95.3 0.017 5.9E-07 56.3 5.5 41 180-220 3-44 (201)
246 3c8u_A Fructokinase; YP_612366 95.2 0.013 4.4E-07 57.6 4.5 38 183-220 7-44 (208)
247 1ofh_A ATP-dependent HSL prote 95.2 0.0095 3.3E-07 62.5 3.4 46 175-220 15-72 (310)
248 2b8t_A Thymidine kinase; deoxy 95.1 0.013 4.4E-07 58.0 4.0 114 198-323 12-128 (223)
249 2zr9_A Protein RECA, recombina 95.1 0.037 1.3E-06 58.9 7.9 88 197-293 60-149 (349)
250 1qvr_A CLPB protein; coiled co 95.1 0.034 1.2E-06 67.2 8.5 46 175-220 558-610 (854)
251 2pze_A Cystic fibrosis transme 95.1 0.22 7.4E-06 49.5 13.0 24 198-221 34-57 (229)
252 1xp8_A RECA protein, recombina 95.1 0.042 1.4E-06 58.8 8.2 88 197-293 73-162 (366)
253 1u94_A RECA protein, recombina 95.1 0.03 1E-06 59.8 7.0 88 197-293 62-151 (356)
254 1v5w_A DMC1, meiotic recombina 95.0 0.068 2.3E-06 56.9 9.6 59 196-255 120-182 (343)
255 2z43_A DNA repair and recombin 95.0 0.05 1.7E-06 57.4 8.4 94 197-293 106-213 (324)
256 1g5t_A COB(I)alamin adenosyltr 94.9 0.038 1.3E-06 53.1 6.4 116 198-321 28-163 (196)
257 3ice_A Transcription terminati 94.8 0.0083 2.8E-07 63.6 1.5 51 186-240 163-216 (422)
258 3m6a_A ATP-dependent protease 94.7 0.025 8.7E-07 64.3 5.6 46 175-220 81-130 (543)
259 3lw7_A Adenylate kinase relate 94.7 0.015 5E-07 55.1 3.1 106 199-323 2-114 (179)
260 1odf_A YGR205W, hypothetical 3 94.7 0.031 1E-06 57.9 5.7 57 194-250 27-84 (290)
261 2i1q_A DNA repair and recombin 94.7 0.054 1.8E-06 57.2 7.6 94 197-293 97-214 (322)
262 3io5_A Recombination and repai 94.6 0.12 4.1E-06 53.5 9.6 87 200-295 30-123 (333)
263 1pgv_A TMD-1, tropomodulin TMD 94.6 0.026 9E-07 54.4 4.5 67 533-600 34-111 (197)
264 2pjz_A Hypothetical protein ST 94.6 0.27 9.1E-06 49.9 12.2 22 199-220 31-52 (263)
265 3rfe_A Platelet glycoprotein I 94.5 0.029 1E-06 50.3 4.4 55 566-623 11-68 (130)
266 3hws_A ATP-dependent CLP prote 94.5 0.024 8.1E-07 61.1 4.5 45 176-220 16-73 (363)
267 1sky_E F1-ATPase, F1-ATP synth 94.4 0.052 1.8E-06 59.5 6.8 50 199-250 152-203 (473)
268 3kb2_A SPBC2 prophage-derived 94.4 0.018 6.1E-07 54.4 2.7 22 199-220 2-23 (173)
269 1qhx_A CPT, protein (chloramph 94.3 0.018 6.2E-07 54.8 2.7 22 199-220 4-25 (178)
270 1zp6_A Hypothetical protein AT 94.3 0.021 7.2E-07 55.0 3.2 24 198-221 9-32 (191)
271 2ga8_A Hypothetical 39.9 kDa p 94.2 0.04 1.4E-06 58.1 5.2 44 177-220 1-46 (359)
272 1ly1_A Polynucleotide kinase; 94.1 0.023 8E-07 54.0 3.1 22 199-220 3-24 (181)
273 3vaa_A Shikimate kinase, SK; s 94.1 0.021 7.2E-07 55.6 2.8 23 198-220 25-47 (199)
274 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.042 1.4E-06 61.4 5.4 43 175-221 22-64 (500)
275 2r44_A Uncharacterized protein 94.1 0.031 1.1E-06 59.2 4.2 42 175-220 27-68 (331)
276 3dm5_A SRP54, signal recogniti 94.0 0.38 1.3E-05 52.5 12.6 24 197-220 99-122 (443)
277 1kag_A SKI, shikimate kinase I 93.9 0.023 7.8E-07 53.7 2.5 22 199-220 5-26 (173)
278 1ixz_A ATP-dependent metallopr 93.9 0.033 1.1E-06 56.5 3.7 47 175-221 16-72 (254)
279 1knq_A Gluconate kinase; ALFA/ 93.9 0.038 1.3E-06 52.3 4.0 23 198-220 8-30 (175)
280 3fwy_A Light-independent proto 93.8 0.031 1E-06 58.6 3.5 24 197-220 47-70 (314)
281 1zuh_A Shikimate kinase; alpha 93.8 0.028 9.6E-07 52.9 2.8 24 197-220 6-29 (168)
282 3trf_A Shikimate kinase, SK; a 93.7 0.027 9.4E-07 53.9 2.7 23 198-220 5-27 (185)
283 2px0_A Flagellar biosynthesis 93.7 0.11 3.7E-06 53.9 7.4 24 197-220 104-127 (296)
284 1kgd_A CASK, peripheral plasma 93.7 0.032 1.1E-06 53.3 3.1 23 198-220 5-27 (180)
285 1fx0_B ATP synthase beta chain 93.7 0.11 3.7E-06 57.1 7.5 64 187-252 155-219 (498)
286 2orw_A Thymidine kinase; TMTK, 93.6 0.014 4.9E-07 56.0 0.4 22 199-220 4-25 (184)
287 1um8_A ATP-dependent CLP prote 93.6 0.05 1.7E-06 58.8 4.7 46 175-220 21-94 (376)
288 1nks_A Adenylate kinase; therm 93.5 0.032 1.1E-06 53.7 2.8 22 199-220 2-23 (194)
289 1uj2_A Uridine-cytidine kinase 93.5 0.035 1.2E-06 56.3 3.2 24 197-220 21-44 (252)
290 3tlx_A Adenylate kinase 2; str 93.5 0.052 1.8E-06 54.7 4.4 38 183-220 14-51 (243)
291 1vma_A Cell division protein F 93.5 0.17 5.8E-06 52.6 8.5 24 197-220 103-126 (306)
292 2kjq_A DNAA-related protein; s 93.5 0.024 8.2E-07 52.3 1.7 24 198-221 36-59 (149)
293 3uie_A Adenylyl-sulfate kinase 93.5 0.043 1.5E-06 53.4 3.6 23 198-220 25-47 (200)
294 1iy2_A ATP-dependent metallopr 93.4 0.042 1.4E-06 56.6 3.7 48 174-221 39-96 (278)
295 2bdt_A BH3686; alpha-beta prot 93.4 0.04 1.4E-06 53.0 3.3 22 199-220 3-24 (189)
296 4gp7_A Metallophosphoesterase; 93.4 0.041 1.4E-06 52.1 3.3 23 198-220 9-31 (171)
297 2ck3_D ATP synthase subunit be 93.4 0.086 3E-06 57.6 6.2 65 186-252 142-207 (482)
298 2rhm_A Putative kinase; P-loop 93.4 0.038 1.3E-06 53.2 3.1 23 198-220 5-27 (193)
299 3jvv_A Twitching mobility prot 93.4 0.024 8.3E-07 60.5 1.7 110 198-324 123-234 (356)
300 3t61_A Gluconokinase; PSI-biol 93.4 0.027 9.3E-07 54.9 2.0 23 198-220 18-40 (202)
301 1pgv_A TMD-1, tropomodulin TMD 93.4 0.076 2.6E-06 51.1 5.1 86 511-597 40-136 (197)
302 1kht_A Adenylate kinase; phosp 93.3 0.035 1.2E-06 53.3 2.8 22 199-220 4-25 (192)
303 2hf9_A Probable hydrogenase ni 93.3 0.064 2.2E-06 53.1 4.8 39 181-221 23-61 (226)
304 2jaq_A Deoxyguanosine kinase; 93.3 0.036 1.2E-06 53.9 2.8 21 200-220 2-22 (205)
305 2qt1_A Nicotinamide riboside k 93.2 0.047 1.6E-06 53.4 3.5 24 197-220 20-43 (207)
306 1uf9_A TT1252 protein; P-loop, 93.2 0.043 1.5E-06 53.3 3.2 25 196-220 6-30 (203)
307 3tr0_A Guanylate kinase, GMP k 93.2 0.042 1.4E-06 53.5 3.0 22 199-220 8-29 (205)
308 1y63_A LMAJ004144AAA protein; 93.2 0.044 1.5E-06 52.5 3.1 23 198-220 10-32 (184)
309 3p32_A Probable GTPase RV1496/ 93.2 0.081 2.8E-06 56.6 5.5 37 184-220 65-101 (355)
310 3iij_A Coilin-interacting nucl 93.2 0.033 1.1E-06 53.1 2.2 23 198-220 11-33 (180)
311 2if2_A Dephospho-COA kinase; a 93.2 0.037 1.3E-06 53.9 2.6 22 199-220 2-23 (204)
312 1jjv_A Dephospho-COA kinase; P 93.1 0.047 1.6E-06 53.3 3.4 22 199-220 3-24 (206)
313 1tev_A UMP-CMP kinase; ploop, 93.1 0.044 1.5E-06 52.7 3.1 23 198-220 3-25 (196)
314 1ukz_A Uridylate kinase; trans 93.1 0.047 1.6E-06 53.1 3.3 24 197-220 14-37 (203)
315 4eun_A Thermoresistant glucoki 93.1 0.046 1.6E-06 53.2 3.2 23 198-220 29-51 (200)
316 1via_A Shikimate kinase; struc 93.0 0.035 1.2E-06 52.6 2.2 22 199-220 5-26 (175)
317 2c95_A Adenylate kinase 1; tra 93.0 0.044 1.5E-06 52.9 2.9 23 198-220 9-31 (196)
318 2wsm_A Hydrogenase expression/ 93.0 0.064 2.2E-06 52.9 4.1 41 179-221 13-53 (221)
319 2ze6_A Isopentenyl transferase 93.0 0.046 1.6E-06 55.4 3.1 22 199-220 2-23 (253)
320 1j8m_F SRP54, signal recogniti 93.0 0.36 1.2E-05 50.0 9.9 23 198-220 98-120 (297)
321 3kl4_A SRP54, signal recogniti 93.0 0.19 6.5E-06 54.8 8.1 24 197-220 96-119 (433)
322 1gvn_B Zeta; postsegregational 93.0 0.082 2.8E-06 54.7 5.0 38 183-220 15-55 (287)
323 3tqc_A Pantothenate kinase; bi 92.9 0.085 2.9E-06 55.2 5.1 42 179-220 71-114 (321)
324 2yvu_A Probable adenylyl-sulfa 92.9 0.054 1.8E-06 51.9 3.4 24 197-220 12-35 (186)
325 1ye8_A Protein THEP1, hypothet 92.9 0.051 1.8E-06 51.7 3.2 22 200-221 2-23 (178)
326 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.054 1.9E-06 55.1 3.5 23 198-220 4-26 (260)
327 3lda_A DNA repair protein RAD5 92.9 0.27 9.3E-06 53.1 9.2 58 197-255 177-238 (400)
328 2iyv_A Shikimate kinase, SK; t 92.9 0.035 1.2E-06 53.1 1.9 22 199-220 3-24 (184)
329 2j41_A Guanylate kinase; GMP, 92.9 0.048 1.7E-06 53.1 3.0 23 198-220 6-28 (207)
330 3cm0_A Adenylate kinase; ATP-b 92.9 0.05 1.7E-06 52.0 3.0 22 199-220 5-26 (186)
331 2p5t_B PEZT; postsegregational 92.9 0.073 2.5E-06 53.9 4.4 39 182-220 13-54 (253)
332 2qor_A Guanylate kinase; phosp 92.8 0.041 1.4E-06 53.7 2.4 23 198-220 12-34 (204)
333 2bbw_A Adenylate kinase 4, AK4 92.8 0.053 1.8E-06 54.7 3.3 23 198-220 27-49 (246)
334 3asz_A Uridine kinase; cytidin 92.8 0.055 1.9E-06 53.0 3.3 24 197-220 5-28 (211)
335 1cke_A CK, MSSA, protein (cyti 92.8 0.052 1.8E-06 53.8 3.2 22 199-220 6-27 (227)
336 1xjc_A MOBB protein homolog; s 92.8 0.057 2E-06 50.7 3.1 24 197-220 3-26 (169)
337 3a00_A Guanylate kinase, GMP k 92.7 0.045 1.5E-06 52.5 2.4 22 199-220 2-23 (186)
338 2xxa_A Signal recognition part 92.7 0.44 1.5E-05 52.1 10.6 37 184-220 79-122 (433)
339 1e6c_A Shikimate kinase; phosp 92.7 0.043 1.5E-06 51.7 2.2 22 199-220 3-24 (173)
340 2plr_A DTMP kinase, probable t 92.6 0.056 1.9E-06 52.9 3.1 23 198-220 4-26 (213)
341 2bwj_A Adenylate kinase 5; pho 92.6 0.049 1.7E-06 52.7 2.6 23 198-220 12-34 (199)
342 2grj_A Dephospho-COA kinase; T 92.6 0.058 2E-06 52.0 3.0 24 197-220 11-34 (192)
343 2pt5_A Shikimate kinase, SK; a 92.6 0.056 1.9E-06 50.7 2.8 21 200-220 2-22 (168)
344 3tau_A Guanylate kinase, GMP k 92.6 0.064 2.2E-06 52.5 3.4 24 198-221 8-31 (208)
345 2vli_A Antibiotic resistance p 92.5 0.042 1.4E-06 52.4 2.0 23 198-220 5-27 (183)
346 1qf9_A UMP/CMP kinase, protein 92.4 0.057 1.9E-06 51.9 2.8 23 198-220 6-28 (194)
347 2cdn_A Adenylate kinase; phosp 92.4 0.058 2E-06 52.4 2.9 23 198-220 20-42 (201)
348 3e70_C DPA, signal recognition 92.4 0.098 3.3E-06 55.1 4.7 25 196-220 127-151 (328)
349 2pbr_A DTMP kinase, thymidylat 92.4 0.057 2E-06 51.9 2.8 21 200-220 2-22 (195)
350 3l0o_A Transcription terminati 92.4 0.24 8E-06 52.6 7.4 52 185-239 163-216 (427)
351 1g8p_A Magnesium-chelatase 38 92.4 0.051 1.7E-06 58.0 2.5 45 175-221 24-68 (350)
352 1g41_A Heat shock protein HSLU 92.3 0.081 2.8E-06 57.8 4.0 47 174-220 14-72 (444)
353 1lvg_A Guanylate kinase, GMP k 92.2 0.057 1.9E-06 52.4 2.5 22 199-220 5-26 (198)
354 2ffh_A Protein (FFH); SRP54, s 92.2 0.33 1.1E-05 52.8 8.7 23 198-220 98-120 (425)
355 2z0h_A DTMP kinase, thymidylat 92.2 0.15 5E-06 49.1 5.4 21 200-220 2-22 (197)
356 3aez_A Pantothenate kinase; tr 92.1 0.082 2.8E-06 55.3 3.7 24 197-220 89-112 (312)
357 3umf_A Adenylate kinase; rossm 92.0 0.083 2.8E-06 51.9 3.4 25 196-220 27-51 (217)
358 1zu4_A FTSY; GTPase, signal re 92.0 0.15 5.2E-06 53.4 5.6 24 197-220 104-127 (320)
359 1htw_A HI0065; nucleotide-bind 92.0 0.087 3E-06 49.0 3.3 23 198-220 33-55 (158)
360 4e22_A Cytidylate kinase; P-lo 92.0 0.076 2.6E-06 53.8 3.2 23 198-220 27-49 (252)
361 1znw_A Guanylate kinase, GMP k 91.9 0.075 2.6E-06 51.9 3.0 23 198-220 20-42 (207)
362 2f6r_A COA synthase, bifunctio 91.9 0.083 2.8E-06 54.5 3.4 24 197-220 74-97 (281)
363 1aky_A Adenylate kinase; ATP:A 91.8 0.077 2.6E-06 52.4 3.0 23 198-220 4-26 (220)
364 1zd8_A GTP:AMP phosphotransfer 91.8 0.069 2.4E-06 53.0 2.6 23 198-220 7-29 (227)
365 1nn5_A Similar to deoxythymidy 91.8 0.075 2.6E-06 52.1 2.8 23 198-220 9-31 (215)
366 2ewv_A Twitching motility prot 91.8 0.29 1E-05 52.5 7.7 108 198-323 136-246 (372)
367 2pez_A Bifunctional 3'-phospho 91.8 0.089 3E-06 50.0 3.3 23 198-220 5-27 (179)
368 2wwf_A Thymidilate kinase, put 91.7 0.07 2.4E-06 52.2 2.5 23 198-220 10-32 (212)
369 4a74_A DNA repair and recombin 91.7 0.2 6.9E-06 49.5 6.0 57 197-254 24-84 (231)
370 2jeo_A Uridine-cytidine kinase 91.7 0.098 3.3E-06 52.7 3.6 23 198-220 25-47 (245)
371 2v54_A DTMP kinase, thymidylat 91.6 0.081 2.8E-06 51.4 2.8 23 198-220 4-26 (204)
372 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.34 1.2E-05 51.0 7.8 105 199-322 172-276 (330)
373 1vht_A Dephospho-COA kinase; s 91.6 0.1 3.6E-06 51.3 3.6 23 198-220 4-26 (218)
374 3ney_A 55 kDa erythrocyte memb 91.5 0.095 3.2E-06 50.6 3.1 23 198-220 19-41 (197)
375 1rj9_A FTSY, signal recognitio 91.5 0.1 3.5E-06 54.3 3.6 24 197-220 101-124 (304)
376 1z6g_A Guanylate kinase; struc 91.5 0.076 2.6E-06 52.4 2.4 23 198-220 23-45 (218)
377 1m7g_A Adenylylsulfate kinase; 91.4 0.092 3.1E-06 51.5 3.0 23 198-220 25-47 (211)
378 3fb4_A Adenylate kinase; psych 91.4 0.087 3E-06 51.8 2.8 21 200-220 2-22 (216)
379 2i3b_A HCR-ntpase, human cance 91.4 0.084 2.9E-06 50.7 2.6 22 200-221 3-24 (189)
380 2onk_A Molybdate/tungstate ABC 91.3 0.15 5.2E-06 51.0 4.5 22 199-220 25-46 (240)
381 1sq5_A Pantothenate kinase; P- 91.3 0.19 6.6E-06 52.4 5.5 24 197-220 79-102 (308)
382 1gtv_A TMK, thymidylate kinase 91.3 0.048 1.6E-06 53.5 0.8 21 200-220 2-22 (214)
383 1zak_A Adenylate kinase; ATP:A 91.3 0.077 2.6E-06 52.5 2.3 23 198-220 5-27 (222)
384 2f1r_A Molybdopterin-guanine d 91.3 0.07 2.4E-06 50.4 1.8 23 198-220 2-24 (171)
385 3nwj_A ATSK2; P loop, shikimat 91.2 0.081 2.8E-06 53.3 2.4 22 199-220 49-70 (250)
386 3dl0_A Adenylate kinase; phosp 91.2 0.094 3.2E-06 51.5 2.8 21 200-220 2-22 (216)
387 3tif_A Uncharacterized ABC tra 91.2 0.15 5.3E-06 50.8 4.4 23 198-220 31-53 (235)
388 3llm_A ATP-dependent RNA helic 91.2 1.5 5.1E-05 43.5 11.8 105 184-295 66-188 (235)
389 3b85_A Phosphate starvation-in 91.1 0.17 5.9E-06 49.3 4.6 22 199-220 23-44 (208)
390 1ex7_A Guanylate kinase; subst 91.1 0.081 2.8E-06 50.6 2.1 22 199-220 2-23 (186)
391 3mfy_A V-type ATP synthase alp 91.1 0.27 9.2E-06 54.5 6.4 59 186-249 216-275 (588)
392 2og2_A Putative signal recogni 91.0 0.18 6.2E-06 53.6 5.0 24 197-220 156-179 (359)
393 4a1f_A DNAB helicase, replicat 91.0 0.55 1.9E-05 49.4 8.6 54 197-254 45-98 (338)
394 2ehv_A Hypothetical protein PH 91.0 0.11 3.7E-06 52.3 3.1 23 198-220 30-52 (251)
395 2pcj_A ABC transporter, lipopr 91.0 0.16 5.3E-06 50.4 4.2 23 198-220 30-52 (224)
396 3gfo_A Cobalt import ATP-bindi 91.0 0.16 5.6E-06 51.9 4.4 23 198-220 34-56 (275)
397 3bh0_A DNAB-like replicative h 90.9 0.34 1.2E-05 50.7 7.0 55 196-254 66-120 (315)
398 1b0u_A Histidine permease; ABC 90.9 0.17 5.8E-06 51.4 4.4 23 198-220 32-54 (262)
399 1s96_A Guanylate kinase, GMP k 90.9 0.11 3.9E-06 51.1 3.0 23 198-220 16-38 (219)
400 3ake_A Cytidylate kinase; CMP 90.8 0.11 3.7E-06 50.6 2.8 21 200-220 4-24 (208)
401 3be4_A Adenylate kinase; malar 90.8 0.093 3.2E-06 51.7 2.3 23 198-220 5-27 (217)
402 3b9q_A Chloroplast SRP recepto 90.8 0.13 4.6E-06 53.4 3.6 23 198-220 100-122 (302)
403 1yrb_A ATP(GTP)binding protein 90.8 0.13 4.5E-06 52.2 3.5 24 197-220 13-36 (262)
404 1fx0_A ATP synthase alpha chai 90.8 0.18 6.2E-06 55.4 4.7 98 198-301 163-274 (507)
405 2yhs_A FTSY, cell division pro 90.6 0.22 7.6E-06 54.9 5.3 42 197-241 292-333 (503)
406 4g1u_C Hemin import ATP-bindin 90.6 0.2 7E-06 50.9 4.7 23 198-220 37-59 (266)
407 1tue_A Replication protein E1; 90.6 0.18 6.2E-06 48.5 4.0 36 184-220 45-80 (212)
408 1np6_A Molybdopterin-guanine d 90.5 0.14 4.7E-06 48.5 3.1 23 198-220 6-28 (174)
409 2olj_A Amino acid ABC transpor 90.5 0.19 6.5E-06 51.0 4.3 24 198-221 50-73 (263)
410 3lnc_A Guanylate kinase, GMP k 90.5 0.089 3E-06 52.4 1.9 23 198-220 27-50 (231)
411 1svm_A Large T antigen; AAA+ f 90.5 0.22 7.7E-06 53.3 5.1 37 184-220 155-191 (377)
412 1cr0_A DNA primase/helicase; R 90.5 0.31 1.1E-05 50.5 6.1 52 198-253 35-87 (296)
413 1mv5_A LMRA, multidrug resista 90.4 0.2 6.9E-06 50.2 4.5 23 198-220 28-50 (243)
414 1ji0_A ABC transporter; ATP bi 90.4 0.2 6.7E-06 50.2 4.4 23 198-220 32-54 (240)
415 2wji_A Ferrous iron transport 90.4 0.17 5.9E-06 47.1 3.8 23 199-221 4-26 (165)
416 1sgw_A Putative ABC transporte 90.4 0.17 5.7E-06 49.7 3.8 23 199-221 36-58 (214)
417 2xb4_A Adenylate kinase; ATP-b 90.4 0.13 4.3E-06 51.0 2.8 21 200-220 2-22 (223)
418 3k1j_A LON protease, ATP-depen 90.3 0.29 9.8E-06 56.4 6.3 43 175-221 41-83 (604)
419 3hjn_A DTMP kinase, thymidylat 90.3 0.33 1.1E-05 46.9 5.7 34 200-235 2-35 (197)
420 2ff7_A Alpha-hemolysin translo 90.3 0.2 6.8E-06 50.4 4.3 24 198-221 35-58 (247)
421 1vpl_A ABC transporter, ATP-bi 90.3 0.21 7E-06 50.6 4.4 24 198-221 41-64 (256)
422 2zej_A Dardarin, leucine-rich 90.2 0.14 4.9E-06 48.7 3.0 22 200-221 4-25 (184)
423 1g6h_A High-affinity branched- 90.2 0.21 7.1E-06 50.6 4.4 23 198-220 33-55 (257)
424 1e4v_A Adenylate kinase; trans 90.2 0.12 4.2E-06 50.6 2.6 21 200-220 2-22 (214)
425 3d3q_A TRNA delta(2)-isopenten 90.2 0.15 5.1E-06 53.6 3.3 22 199-220 8-29 (340)
426 3vr4_D V-type sodium ATPase su 90.1 0.22 7.5E-06 54.1 4.7 51 199-251 152-207 (465)
427 2ixe_A Antigen peptide transpo 90.1 0.21 7.1E-06 51.0 4.3 24 198-221 45-68 (271)
428 3end_A Light-independent proto 90.1 0.16 5.5E-06 53.0 3.5 41 196-238 39-79 (307)
429 1ak2_A Adenylate kinase isoenz 90.0 0.15 5.1E-06 50.8 3.1 23 198-220 16-38 (233)
430 1fzq_A ADP-ribosylation factor 90.0 0.21 7.1E-06 47.4 4.0 26 196-221 14-39 (181)
431 3r20_A Cytidylate kinase; stru 90.0 0.16 5.4E-06 50.5 3.2 23 198-220 9-31 (233)
432 4eaq_A DTMP kinase, thymidylat 89.9 0.24 8.2E-06 49.2 4.5 24 198-221 26-49 (229)
433 3bgw_A DNAB-like replicative h 89.9 1.1 3.9E-05 49.1 10.3 53 197-253 196-248 (444)
434 2r9v_A ATP synthase subunit al 89.9 0.22 7.6E-06 54.7 4.5 49 199-251 176-227 (515)
435 2yz2_A Putative ABC transporte 89.8 0.23 7.9E-06 50.6 4.4 24 198-221 33-56 (266)
436 2v3c_C SRP54, signal recogniti 89.7 0.18 6E-06 55.3 3.6 24 197-220 98-121 (432)
437 4hlc_A DTMP kinase, thymidylat 89.7 0.51 1.7E-05 45.9 6.5 30 199-230 3-32 (205)
438 1oix_A RAS-related protein RAB 89.7 0.16 5.5E-06 48.7 2.9 24 198-221 29-52 (191)
439 2dyk_A GTP-binding protein; GT 89.6 0.19 6.4E-06 46.3 3.3 23 199-221 2-24 (161)
440 2qe7_A ATP synthase subunit al 89.6 0.35 1.2E-05 53.1 5.8 90 198-293 162-264 (502)
441 2d2e_A SUFC protein; ABC-ATPas 89.5 0.17 5.9E-06 51.0 3.1 23 198-220 29-51 (250)
442 1ltq_A Polynucleotide kinase; 89.5 0.17 5.7E-06 52.6 3.1 22 199-220 3-24 (301)
443 1r6b_X CLPA protein; AAA+, N-t 89.4 0.32 1.1E-05 57.8 5.9 47 174-220 457-510 (758)
444 2ihy_A ABC transporter, ATP-bi 89.4 0.26 8.9E-06 50.5 4.4 23 198-220 47-69 (279)
445 1pzn_A RAD51, DNA repair and r 89.4 0.4 1.4E-05 50.9 6.0 57 196-253 129-189 (349)
446 3a8t_A Adenylate isopentenyltr 89.4 0.18 6.2E-06 52.7 3.2 24 198-221 40-63 (339)
447 3crm_A TRNA delta(2)-isopenten 89.3 0.18 6E-06 52.7 3.0 22 199-220 6-27 (323)
448 2zu0_C Probable ATP-dependent 89.3 0.18 6.3E-06 51.3 3.2 24 198-221 46-69 (267)
449 1tq4_A IIGP1, interferon-induc 89.3 0.19 6.4E-06 54.6 3.3 34 187-220 58-91 (413)
450 3sr0_A Adenylate kinase; phosp 89.2 0.18 6E-06 49.2 2.8 21 200-220 2-22 (206)
451 1q3t_A Cytidylate kinase; nucl 89.2 0.2 6.9E-06 50.0 3.3 24 197-220 15-38 (236)
452 2afh_E Nitrogenase iron protei 89.2 0.19 6.6E-06 51.8 3.3 39 198-238 2-40 (289)
453 2f9l_A RAB11B, member RAS onco 89.2 0.18 6.1E-06 48.7 2.9 24 198-221 5-28 (199)
454 2qi9_C Vitamin B12 import ATP- 89.2 0.19 6.6E-06 50.5 3.2 23 198-220 26-48 (249)
455 2ghi_A Transport protein; mult 89.2 0.18 6.3E-06 51.1 3.0 24 198-221 46-69 (260)
456 3zvl_A Bifunctional polynucleo 89.1 0.2 6.7E-06 54.8 3.4 25 197-221 257-281 (416)
457 1ls1_A Signal recognition part 89.1 0.22 7.6E-06 51.6 3.6 23 198-220 98-120 (295)
458 2vp4_A Deoxynucleoside kinase; 89.1 0.16 5.6E-06 50.4 2.6 24 197-220 19-42 (230)
459 1cp2_A CP2, nitrogenase iron p 89.1 0.19 6.6E-06 51.2 3.1 38 199-238 2-39 (269)
460 2wjg_A FEOB, ferrous iron tran 89.0 0.23 7.8E-06 47.2 3.5 24 198-221 7-30 (188)
461 2ck3_A ATP synthase subunit al 89.0 0.26 8.9E-06 54.3 4.2 105 187-294 152-273 (510)
462 2nq2_C Hypothetical ABC transp 88.9 0.2 7E-06 50.5 3.2 24 198-221 31-54 (253)
463 2qm8_A GTPase/ATPase; G protei 88.9 0.34 1.2E-05 51.2 5.0 34 187-220 44-77 (337)
464 2f7s_A C25KG, RAS-related prot 88.9 1.2 4.2E-05 43.2 8.9 24 198-221 25-48 (217)
465 2lkc_A Translation initiation 88.9 0.29 9.8E-06 45.9 4.1 25 197-221 7-31 (178)
466 2j37_W Signal recognition part 88.9 0.31 1.1E-05 54.3 4.8 24 197-220 100-123 (504)
467 2p67_A LAO/AO transport system 88.8 0.37 1.3E-05 51.1 5.2 34 187-220 45-78 (341)
468 1a7j_A Phosphoribulokinase; tr 88.8 0.12 4.1E-06 53.4 1.4 24 197-220 4-27 (290)
469 2dr3_A UPF0273 protein PH0284; 88.7 0.26 9E-06 49.2 3.9 39 198-238 23-61 (247)
470 3cmu_A Protein RECA, recombina 88.7 0.64 2.2E-05 59.9 8.0 89 196-293 1425-1515(2050)
471 2c61_A A-type ATP synthase non 88.7 0.19 6.6E-06 54.9 2.9 53 199-251 153-208 (469)
472 2nzj_A GTP-binding protein REM 88.7 0.22 7.5E-06 46.5 3.0 24 198-221 4-27 (175)
473 3vr4_A V-type sodium ATPase ca 88.5 0.32 1.1E-05 54.1 4.5 58 186-248 221-279 (600)
474 2ce2_X GTPase HRAS; signaling 88.5 0.2 6.7E-06 46.2 2.5 22 200-221 5-26 (166)
475 4edh_A DTMP kinase, thymidylat 88.4 0.56 1.9E-05 45.8 5.8 23 198-220 6-28 (213)
476 2ocp_A DGK, deoxyguanosine kin 88.4 0.22 7.7E-06 49.8 3.0 23 198-220 2-24 (241)
477 1nlf_A Regulatory protein REPA 88.4 0.2 6.8E-06 51.5 2.7 23 198-220 30-52 (279)
478 3con_A GTPase NRAS; structural 88.3 0.22 7.4E-06 47.5 2.7 23 199-221 22-44 (190)
479 3gqb_B V-type ATP synthase bet 88.3 0.16 5.5E-06 55.1 2.0 53 199-251 148-210 (464)
480 3oaa_A ATP synthase subunit al 88.2 0.48 1.6E-05 51.9 5.6 89 199-293 163-264 (513)
481 3exa_A TRNA delta(2)-isopenten 88.1 0.24 8.3E-06 51.1 3.0 23 198-220 3-25 (322)
482 1z08_A RAS-related protein RAB 88.1 0.27 9.3E-06 45.6 3.3 24 198-221 6-29 (170)
483 3def_A T7I23.11 protein; chlor 88.1 0.48 1.7E-05 48.0 5.4 38 184-221 22-59 (262)
484 2eyu_A Twitching motility prot 88.1 0.26 9E-06 50.0 3.3 111 198-324 25-136 (261)
485 3cf2_A TER ATPase, transitiona 88.0 0.41 1.4E-05 56.4 5.3 48 174-221 476-534 (806)
486 3tw8_B RAS-related protein RAB 88.0 0.29 1E-05 45.9 3.5 25 197-221 8-32 (181)
487 1z2a_A RAS-related protein RAB 88.0 0.28 9.4E-06 45.4 3.2 24 198-221 5-28 (168)
488 3q72_A GTP-binding protein RAD 88.0 0.23 7.9E-06 46.0 2.7 22 200-221 4-25 (166)
489 2gj8_A MNME, tRNA modification 88.0 0.23 8E-06 46.6 2.7 23 199-221 5-27 (172)
490 2erx_A GTP-binding protein DI- 88.0 0.26 8.8E-06 45.8 3.0 23 199-221 4-26 (172)
491 2v9p_A Replication protein E1; 87.9 0.25 8.7E-06 51.1 3.1 24 197-220 125-148 (305)
492 1u8z_A RAS-related protein RAL 87.9 0.24 8.3E-06 45.7 2.7 23 199-221 5-27 (168)
493 4dkx_A RAS-related protein RAB 87.8 0.28 9.7E-06 48.1 3.3 22 200-221 15-36 (216)
494 3nh6_A ATP-binding cassette SU 87.6 0.23 7.9E-06 51.5 2.6 23 198-220 80-102 (306)
495 1c1y_A RAS-related protein RAP 87.6 0.24 8.3E-06 45.7 2.6 23 199-221 4-26 (167)
496 1p5z_B DCK, deoxycytidine kina 87.6 0.21 7.2E-06 50.8 2.3 24 197-220 23-46 (263)
497 1h65_A Chloroplast outer envel 87.6 0.53 1.8E-05 47.9 5.3 39 183-221 24-62 (270)
498 1nij_A Hypothetical protein YJ 87.5 0.24 8.3E-06 51.9 2.8 25 197-221 3-27 (318)
499 2ged_A SR-beta, signal recogni 87.5 0.31 1.1E-05 46.5 3.3 25 197-221 47-71 (193)
500 3q85_A GTP-binding protein REM 87.5 0.34 1.2E-05 44.9 3.5 22 199-220 3-24 (169)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.7e-45 Score=424.73 Aligned_cols=283 Identities=16% Similarity=0.158 Sum_probs=227.5
Q ss_pred ecchHHHHHHHHHHHcC-CCCceEEEEEcCCCChHHHHHHHHhc--CccccccCCeeEEEEeCCCC--ChHHHHHHHHHH
Q 003154 178 VGLDDKMEELLDHLIEG-PPQLSVVAVLDSVGLDKTAFAAEAYN--SNYVKHYFDCKAWVPVSILY--QPDSLLDNIIKF 252 (843)
Q Consensus 178 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~ 252 (843)
|||+.++++|.++|..+ +.+.++|+|+|||||||||||+++|+ |.+++.+|++++||++++.+ +..+++++|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 67899999999999999985 899999999999
Q ss_pred hCCCCC---CccccccchHHHHHHHHHHHHhCCC-eEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhhhc--
Q 003154 253 LMPSSK---LSEVMEDRDYEMRKIIHLHGYLMSK-RYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEILTS-- 326 (843)
Q Consensus 253 l~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~-- 326 (843)
++.... .+.....+.+.+. ..+++.|+++ ||||||||||+.+++ .+.. .+||+||||||++.++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~--~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLK--RMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHH--HHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHH--HHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 987532 1112334556778 9999999996 999999999998865 2211 169999999999999871
Q ss_pred -----c--cc-------------CCCCcCCcccccccchhhhhcCCchhHHHHHhhhhHH-------HHHHh----hhcc
Q 003154 327 -----F--QL-------------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSLE-------ENREK----ILAE 375 (843)
Q Consensus 327 -----~--~~-------------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~-------~~~~~----~~~~ 375 (843)
| +| ......++++.+++++|+++|+|+||||+++|+.|+. .+... ....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSST
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHH
Confidence 2 22 1122223677889999999999999999999998761 11111 1234
Q ss_pred cccchhhccCCCchhhhhHHh-----------hhccCCCCCccChhhHHHHHHHc--CCCCCC-----hHHHHHHHHHHH
Q 003154 376 PFGDQVLTYSKFPLYFKLCGL-----------YLSVFPLHSEISARQLYQLWIAE--GFVRDN-----SEATAEEILEEL 437 (843)
Q Consensus 376 ~~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~Li~~wiae--g~i~~~-----~~~~~~~~~~~L 437 (843)
+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+... .++.++ ||++|
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L 437 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL 437 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence 588999999999999999999 999999999998 8999999 999653 577777 99999
Q ss_pred HhcCCeEEEEeCCCCcEeEEEcCcchHHHHHHhhhcccc
Q 003154 438 IDRGFIQVKRRKASGTIKTCSFSSLVWPTILAVACTVEF 476 (843)
Q Consensus 438 ~~rsll~~~~~~~~~~~~~~~mhdlv~~~a~~~~~~e~~ 476 (843)
+++||++....+ ...+|+|||+||++|+.++.++++
T Consensus 438 ~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 438 SKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 999999987643 335799999999999999887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.4e-37 Score=391.34 Aligned_cols=285 Identities=18% Similarity=0.189 Sum_probs=228.5
Q ss_pred CCCCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-cccC-CeeEEEEeCCCCC--hHHHH
Q 003154 171 KNRDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYV-KHYF-DCKAWVPVSILYQ--PDSLL 246 (843)
Q Consensus 171 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~~~~~ 246 (843)
+.....||||++++++|.++|...+++.++|+|+||||+||||||+++|++.++ ..+| +.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 445667999999999999999877777999999999999999999999997543 4555 6788999998644 44557
Q ss_pred HHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCC--eEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 247 DNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSK--RYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
..++..+............+.+++. ..++..+.++ ||||||||||+.++|+.+ ++||+||||||++.++
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAK--DRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHH--HHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHH--HHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 7788888764322212345667888 9999999877 999999999999877654 5699999999999998
Q ss_pred h-c------c--cc------------CCCCcCCcccccccchhhhhcCCchhHHHHHhhhhHH------HHHHhhh----
Q 003154 325 T-S------F--QL------------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSLE------ENREKIL---- 373 (843)
Q Consensus 325 ~-~------~--~~------------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~------~~~~~~~---- 373 (843)
. . + .+ .......+++.+.+++|+++|+|+||||+++|++|+. +..+.+.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCC
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhh
Confidence 5 1 1 11 0012234566788999999999999999999999982 2222221
Q ss_pred c-----------ccccchhhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCC
Q 003154 374 A-----------EPFGDQVLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGF 442 (843)
Q Consensus 374 ~-----------~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsl 442 (843)
. .+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSL 423 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTS
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccc
Confidence 1 136789999999999999999999999999999999999999765 5688999999999999
Q ss_pred eEEEEeCCCCcEeEEEcCcchHHHHHHhhhcc
Q 003154 443 IQVKRRKASGTIKTCSFSSLVWPTILAVACTV 474 (843)
Q Consensus 443 l~~~~~~~~~~~~~~~mhdlv~~~a~~~~~~e 474 (843)
++... +++..+|+|||++|++++..+.++
T Consensus 424 ~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 99765 334467999999999999987755
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.4e-36 Score=350.27 Aligned_cols=269 Identities=16% Similarity=0.107 Sum_probs=207.1
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCe-eEEEEeCCCCChHHHHHHHHHHh
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDC-KAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
...|||++++++|.++|...+ +.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345999999999999998643 4899999999999999999999998788999986 99999999999988888888754
Q ss_pred CCCC-----CCc--cccccchHHHHHHHHHHHHh---CCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 254 MPSS-----KLS--EVMEDRDYEMRKIIHLHGYL---MSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 254 ~~~~-----~~~--~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
.... ... .....+.+++. ..+++.| ++||+||||||||+.+.|+.+. +||+||||||++.+
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~--e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHH--HHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHH
T ss_pred hhcCcccccccccccCCCCCHHHHH--HHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHH
Confidence 3210 000 00112344556 7777766 7899999999999999998752 59999999999998
Q ss_pred hh------cc--c------cCCCC--------cCCcccccccchhhhhcCCchhHHHHHhhhhHHH-----HHHhh-hcc
Q 003154 324 LT------SF--Q------LENGQ--------HIRLDLVPAGGPLRVTYEGWPFLILYHGSLSLEE-----NREKI-LAE 375 (843)
Q Consensus 324 ~~------~~--~------~~~~~--------~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~-----~~~~~-~~~ 375 (843)
+. .| + +.... .......++. .+.|+|+||||+++|+.|+.+ .+... ...
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~---~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~ 354 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHH---HHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHH---HHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhH
Confidence 84 12 2 10000 0001112223 344999999999999999843 22211 123
Q ss_pred cccchhhccCCCchhh-hhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCcE
Q 003154 376 PFGDQVLTYSKFPLYF-KLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRGFIQVKRRKASGTI 454 (843)
Q Consensus 376 ~~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rsll~~~~~~~~~~~ 454 (843)
+..++.+||+.||+++ |.||+|||+||+++.|+++.++.+|+++|. +.++.++++|+++||++... ..
T Consensus 355 I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe------edAe~~L~eLvdRSLLq~d~-----~~ 423 (1221)
T 1vt4_I 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYSLVEKQP-----KE 423 (1221)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------HHHHHHHHHHHTSSSSSBCS-----SS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------HHHHHHHHHHHhhCCEEEeC-----CC
Confidence 4889999999999999 999999999999999999999999999872 46889999999999999731 12
Q ss_pred eEEEcCcchHHHH
Q 003154 455 KTCSFSSLVWPTI 467 (843)
Q Consensus 455 ~~~~mhdlv~~~a 467 (843)
.+|+|||++++++
T Consensus 424 ~rYrMHDLllELr 436 (1221)
T 1vt4_I 424 STISIPSIYLELK 436 (1221)
T ss_dssp SEEBCCCHHHHHH
T ss_pred CEEEehHHHHHHh
Confidence 4799999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=321.19 Aligned_cols=281 Identities=18% Similarity=0.209 Sum_probs=213.9
Q ss_pred CCCCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-cccC-CeeEEEEeCCCCChHHHHHH
Q 003154 171 KNRDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYV-KHYF-DCKAWVPVSILYQPDSLLDN 248 (843)
Q Consensus 171 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~ 248 (843)
+.....||||+.++++|.++|....++.++|+|+||||+||||||++++++.++ +.+| +.++|+++++. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 344567999999999999999876566899999999999999999999997666 7889 58999999876 33334433
Q ss_pred ---HHHHhCCCCCCccccccchHHHHHHHHHHHHhCC--CeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 249 ---IIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMS--KRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 249 ---i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
++..++...........+.+.+. ..++..+.+ +++||||||||+.+.++. + .+||+||||||++.+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAK--DRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHH--HHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHH--HHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHH
Confidence 34455532111112334566777 888888876 789999999998766543 2 468999999999987
Q ss_pred hhc-----c--c---c-----------CCCCcCCcccccccchhhhhcCCchhHHHHHhhhhHHH------HHHhhhc--
Q 003154 324 LTS-----F--Q---L-----------ENGQHIRLDLVPAGGPLRVTYEGWPFLILYHGSLSLEE------NREKILA-- 374 (843)
Q Consensus 324 ~~~-----~--~---~-----------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~------~~~~~~~-- 374 (843)
+.. + . | ...........+.+.+|+++|+|+||||..+|+.|+.. +.+.+..
T Consensus 270 ~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 270 TDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQ 349 (591)
T ss_dssp GTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCC
T ss_pred HHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhH
Confidence 751 2 1 2 00011123446778999999999999999999999721 2222211
Q ss_pred -------------ccccchhhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHHHhcC
Q 003154 375 -------------EPFGDQVLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEELIDRG 441 (843)
Q Consensus 375 -------------~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L~~rs 441 (843)
.+..++.+||+.||++.|.||++||+||+++.|+.+.+...|.++ .+.+..++++|+++|
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKS 422 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTT
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCc
Confidence 225678999999999999999999999999999999999999654 346889999999999
Q ss_pred CeEEEEeCCCCcEeEEEcCcchHHHHHHhh
Q 003154 442 FIQVKRRKASGTIKTCSFSSLVWPTILAVA 471 (843)
Q Consensus 442 ll~~~~~~~~~~~~~~~mhdlv~~~a~~~~ 471 (843)
|++.... +....|+||+++++++....
T Consensus 423 Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 423 LLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred CeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 9996553 23457999999999998874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1e-25 Score=272.36 Aligned_cols=195 Identities=24% Similarity=0.232 Sum_probs=97.8
Q ss_pred cceEEEEEeeCCCCC-cccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC-CCchhccCCC-C
Q 003154 490 KRVRRFCANVNLGEL-DSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD-QYPAGIENLS-R 564 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~-~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~-~lp~~i~~L~-~ 564 (843)
.+.++|.+. ++... ..+..+ +++|++|.+.++... ..++...+.++++|++|+|++|.+. .+|..+.++. +
T Consensus 294 ~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 294 DTLTGLDLS-GNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TTCSEEECC-SSEEEECCCGGGGGCTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred CcCCEEECc-CCcCCCccchHHhcCCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 445556555 33322 233333 566666666655432 1234444666666666666666554 5555544443 4
Q ss_pred --------------------------ccEEEccCCCCc-ccchhHhhCCccCcEEeCCCCcCc-ccchhhhccccccccc
Q 003154 565 --------------------------LRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPSSYID-HTADDIWKLNKLRHLN 616 (843)
Q Consensus 565 --------------------------Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~ 616 (843)
|++|++++|.++ .+|..+ +++++|++|++++|.+. .+|..++.+++|+.|+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 444444444444 334343 55555555555555443 3355555555555555
Q ss_pred ccccccCCCCCC---CCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecC
Q 003154 617 FGLITLPAHPGK---YCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 617 L~~~~l~~~~~~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 692 (843)
+++|.+.+.... .+++|++|....+ .....++..++.+++|+.|++++ |...+.+|..+..+++|+.|++++|
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCS--SCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccC--CccCCcCChHHhcCCCCCEEECCCC
Confidence 555555432111 3444444443222 22223343455666666666655 4444455555555666666666554
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=246.47 Aligned_cols=305 Identities=21% Similarity=0.155 Sum_probs=236.4
Q ss_pred CCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCccc
Q 003154 500 NLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSL 578 (843)
Q Consensus 500 ~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~l 578 (843)
+.....++..+.++++.|.+.++... .+.+..|.++++|++|+|++|.+..+ |..++++++|++|+|++|.++.+
T Consensus 20 ~~~l~~ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 20 RKRFVAVPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCcCcCCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 33444456656788999999887763 35567789999999999999998855 77899999999999999999999
Q ss_pred chhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCC---CCCCCCCccccccccccCCCCCCccccCC
Q 003154 579 PSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAH---PGKYCSSLENLNFISALHPRCCTPDILGR 654 (843)
Q Consensus 579 p~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 654 (843)
|+..|+++++|++|+|++|.+..+ |..+..+++|++|++++|.+... .+..+++|++|....+. .....+..+..
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~ 174 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH 174 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcc
Confidence 988779999999999999988877 56789999999999998887653 23366777777644432 22333344788
Q ss_pred CCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCC
Q 003154 655 LPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLP 734 (843)
Q Consensus 655 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~ 734 (843)
+++|+.|++.+ +......+..+..+++|+.|+++++ +.+..+....... .+|+.|++++|.+....+..++.++
T Consensus 175 l~~L~~L~l~~--n~i~~~~~~~~~~l~~L~~L~l~~~---~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 175 LHGLIVLRLRH--LNINAIRDYSFKRLYRLKVLEISHW---PYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp CTTCCEEEEES--CCCCEECTTCSCSCTTCCEEEEECC---TTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred cCCCcEEeCCC--CcCcEeChhhcccCcccceeeCCCC---ccccccCcccccC-ccccEEECcCCcccccCHHHhcCcc
Confidence 88999999987 5555555567778888999998853 3444443333334 6899999999998766556789999
Q ss_pred CCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc-ccccccccccceEeeecCCCCCCCCc-cccCCCCCcEE
Q 003154 735 YLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW-TMGNEAMPKLECLVVNPCAYLKRLPE-HLWCMKNFKKL 812 (843)
Q Consensus 735 ~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L 812 (843)
+|+.|+|++|.+.+. .......+++|+.|+|++|. +..+ +..+..+++|+.|++++|. +..+|. .+..+++|+.|
T Consensus 249 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 249 YLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCCEEECCSSCCCEE-CTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEE
T ss_pred ccCeeECCCCcCCcc-ChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEE
Confidence 999999999887643 23345678999999999987 4444 6677889999999999997 555654 57889999999
Q ss_pred EecCCC
Q 003154 813 ELWWPQ 818 (843)
Q Consensus 813 ~l~~~~ 818 (843)
++.+||
T Consensus 326 ~l~~N~ 331 (477)
T 2id5_A 326 ILDSNP 331 (477)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 999877
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.3e-24 Score=238.28 Aligned_cols=301 Identities=19% Similarity=0.153 Sum_probs=176.2
Q ss_pred cceEEEEEeeCCCCCcccccc---ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCc
Q 003154 490 KRVRRFCANVNLGELDSFDRL---DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRL 565 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~L 565 (843)
.+++++.+. +.....++... +++|++|.+.++... .++...|..+++|++|+|++|.+..+| ..++++++|
T Consensus 45 ~~l~~l~l~-~~~l~~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEE-SCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEec-CCchhhCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 344555554 33333333322 445555555444331 223334455555555555555554432 234555555
Q ss_pred cEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccc-hhhhcccccccccccccccCCCCCCCCCCccccccccccCC
Q 003154 566 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHP 644 (843)
Q Consensus 566 r~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~ 644 (843)
++|++++|.++.+|+.+|+++++|++|++++|.+..++ ..+..+++|++|++++|.+....+..+++|+.|.....
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n--- 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN--- 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS---
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccc---
Confidence 55555555555555544455555555555555554442 23445555555555555444433233444444432211
Q ss_pred CCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCC
Q 003154 645 RCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLID 724 (843)
Q Consensus 645 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~ 724 (843)
.+.. +...++|+.|++++ +.... ++. ...++|+.|+++++. +.... ++..+ ++|+.|++++|.+.+
T Consensus 197 --~l~~-~~~~~~L~~L~l~~--n~l~~-~~~--~~~~~L~~L~l~~n~----l~~~~-~l~~l-~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 197 --LLST-LAIPIAVEELDASH--NSINV-VRG--PVNVELTILKLQHNN----LTDTA-WLLNY-PGLVEVDLSYNELEK 262 (390)
T ss_dssp --CCSE-EECCSSCSEEECCS--SCCCE-EEC--CCCSSCCEEECCSSC----CCCCG-GGGGC-TTCSEEECCSSCCCE
T ss_pred --cccc-cCCCCcceEEECCC--Ceeee-ccc--cccccccEEECCCCC----CcccH-HHcCC-CCccEEECCCCcCCC
Confidence 1111 23334455555554 22111 111 123455555555432 11111 44566 899999999999887
Q ss_pred CCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCcccc
Q 003154 725 DPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLW 804 (843)
Q Consensus 725 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~ 804 (843)
..+..++.+++|+.|+|++|.+.+ ++.....+++|++|++++|. +..++.....+++|+.|++++|+ +..+| +.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~ 336 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LS 336 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--ch
Confidence 778889999999999999998865 33444679999999999985 77888778899999999999998 45565 77
Q ss_pred CCCCCcEEEecCCC
Q 003154 805 CMKNFKKLELWWPQ 818 (843)
Q Consensus 805 ~l~~L~~L~l~~~~ 818 (843)
.+++|+.|++++||
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 89999999999988
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.9e-24 Score=252.16 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=99.2
Q ss_pred cccceEEEEEeeCCCCCcccc-cc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCC
Q 003154 488 SRKRVRRFCANVNLGELDSFD-RL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~ 563 (843)
.+.++++|.+. ++.....+. .+ +++|++|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |..+++++
T Consensus 30 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 45678888888 555554443 34 78888888887765 234556778888888888888888766 77788888
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCc--ccchhhhcccccccccccccccCC
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYID--HTADDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~l~~ 624 (843)
+|++|++++|.+..+|+..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 8888888888888777433488888888888888776 467888888888888887776543
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.9e-24 Score=251.04 Aligned_cols=286 Identities=19% Similarity=0.213 Sum_probs=176.5
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 589 (843)
.++++.+.+.++.. ..++..+|.++++|++|+|++|.+..+| ..++.+++|++|+|++|.++.+|+..|+++++|
T Consensus 50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 44555555544443 2344455555555555555555555433 255555555555555555555555444555555
Q ss_pred cEEeCCCCcCcccchh-hhcccccccccccccccCCCC---CCCCCCccccccccccCCCCCCccccCCCCCCceEeeec
Q 003154 590 YTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAHP---GKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICG 665 (843)
Q Consensus 590 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~~---~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 665 (843)
++|+|++|.+..+|.. ++.+++|++|++++|.+.+.. +..+++|++|....+.... + . ++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~-~-~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V-D-LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB--C-C-GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC--c-C-hhhhhhhhhhhccc
Confidence 5555555555555544 355555555555555554432 1134444444432221111 1 1 34445555555554
Q ss_pred CCcchhhhhhHhhcCCCCCCeEEeecCC-------CCCCCceEee---------ccCCCCCCccEEEEecCCCCCCCccc
Q 003154 666 DLNYYQSLLSKSLHGLSCLESLKLVNES-------KMPRLSKIVL---------FENQFPPSLTHLSFSNTDLIDDPMPT 729 (843)
Q Consensus 666 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~ 729 (843)
+... .+....+|+.|++++|. .+++|+.|.+ ++..+ ++|+.|+|++|.+.+..|..
T Consensus 202 --n~l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 202 --NLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp --SCCS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGG
T ss_pred --Cccc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHH
Confidence 2111 12233345555544432 2234444444 34556 89999999999998888889
Q ss_pred ccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCC
Q 003154 730 LEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNF 809 (843)
Q Consensus 730 l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L 809 (843)
++.+++|+.|+|++|.+.+ ++.....+|+|+.|+|++|. +..+|..++.+++|+.|++++|+ +..+| +..+++|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L 347 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTL 347 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCC
T ss_pred hcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCC
Confidence 9999999999999998875 34445679999999999986 67888888899999999999998 45555 6788999
Q ss_pred cEEEecCCC
Q 003154 810 KKLELWWPQ 818 (843)
Q Consensus 810 ~~L~l~~~~ 818 (843)
+.|++++||
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 999999988
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=7.4e-24 Score=244.94 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=74.5
Q ss_pred CCccEEEEecCCCCCCCcc-cccCCCCCcEEEeecccccCCccccCCCCC-CcccEEEecCcccccccccccccccccce
Q 003154 710 PSLTHLSFSNTDLIDDPMP-TLEKLPYLQVLKLKQNSYSGRKLACGSDGF-PKLKVLHLKSMIWLEEWTMGNEAMPKLEC 787 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f-~~L~~L~L~~~~~l~~l~~~~~~lp~L~~ 787 (843)
++|+.|++++|.+.+..|. .+..+++|+.|++++|.+.+..+. .+ ++|+.|++++|. ++.+|.....+++|+.
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR----CLPPRIKVLDLHSNK-IKSIPKQVVKLEALQE 448 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG----SCCTTCCEEECCSSC-CCCCCGGGGGCTTCCE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh----hhcccCCEEECCCCc-ccccchhhhcCCCCCE
Confidence 5666666666666553333 355666777777766665543221 12 688888888875 6688877779999999
Q ss_pred EeeecCCCCCCCCcc-ccCCCCCcEEEecCCC
Q 003154 788 LVVNPCAYLKRLPEH-LWCMKNFKKLELWWPQ 818 (843)
Q Consensus 788 L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 818 (843)
|++++|. ++.+|.. +..+++|++|++++||
T Consensus 449 L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 449 LNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 9999996 5678876 8889999999999877
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.4e-23 Score=244.77 Aligned_cols=309 Identities=17% Similarity=0.138 Sum_probs=185.8
Q ss_pred EEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEcc
Q 003154 493 RRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLN 571 (843)
Q Consensus 493 r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~ 571 (843)
+++.+. +.....+|..+.++++.|.+.++... .+++..|.++++|++|+|++|.+..+ |..++++++|++|+++
T Consensus 34 ~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYS-NRNLTHVPKDLPPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECT-TSCCCSCCTTSCTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcC-CCCCccCCCCCCCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 555555 44444455544677777777776653 34455677777777777777777754 5567777777777777
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCcccc--hhhhcccccccccccccccCCCCCCCCCCc--cccccccccCC-CC
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTA--DDIWKLNKLRHLNFGLITLPAHPGKYCSSL--ENLNFISALHP-RC 646 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L--~~L~~~~~~~~-~~ 646 (843)
+|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+....+..+++| ++|....+... ..
T Consensus 109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccc
Confidence 7777777764 6777777777777776653 567777777777777777665433344444 44432221110 00
Q ss_pred CCccccC--------------------------CCC--------------------------------------------
Q 003154 647 CTPDILG--------------------------RLP-------------------------------------------- 656 (843)
Q Consensus 647 ~~~~~l~--------------------------~l~-------------------------------------------- 656 (843)
..+..+. .++
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 0000011 111
Q ss_pred -----------CCceEeeecCCcchhhhhhHhh-----------------------------------------------
Q 003154 657 -----------KLGSLQICGDLNYYQSLLSKSL----------------------------------------------- 678 (843)
Q Consensus 657 -----------~L~~L~l~~~~~~~~~~l~~~l----------------------------------------------- 678 (843)
+|+.|++++ +...+.+|..+
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~--n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYN--LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEE--EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHhhhcccccEEEEec--cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 233333332 11111111111
Q ss_pred ------cCCCCCCeEEeecCC----------CCCCCceEeec-------------cCCCCCCccEEEEecCCCCCCCc-c
Q 003154 679 ------HGLSCLESLKLVNES----------KMPRLSKIVLF-------------ENQFPPSLTHLSFSNTDLIDDPM-P 728 (843)
Q Consensus 679 ------~~l~~L~~L~l~~~~----------~~~~L~~L~l~-------------~~~lp~~L~~L~L~~~~l~~~~~-~ 728 (843)
..+++|+.|++++|. .+++|+.|.+. +..+ ++|+.|++++|.+.+..+ .
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChh
Confidence 344555555555432 23444444442 2233 566677777776655233 3
Q ss_pred cccCCCCCcEEEeecccccCCccccCCCCC-CcccEEEecCcccccccccccccccccceEeeecCCCCCCCCcc-ccCC
Q 003154 729 TLEKLPYLQVLKLKQNSYSGRKLACGSDGF-PKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEH-LWCM 806 (843)
Q Consensus 729 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f-~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~-l~~l 806 (843)
.+..+++|+.|++++|.+.+..+ ..+ ++|++|++++|. ++.+|.....+++|+.|++++|. +..+|.. +..+
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 496 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRL 496 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTC
T ss_pred hhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcC
Confidence 45666777777777666654322 123 689999999874 77888877899999999999997 5578887 8899
Q ss_pred CCCcEEEecCCC
Q 003154 807 KNFKKLELWWPQ 818 (843)
Q Consensus 807 ~~L~~L~l~~~~ 818 (843)
++|+.|++.+||
T Consensus 497 ~~L~~L~l~~N~ 508 (562)
T 3a79_B 497 TSLQYIWLHDNP 508 (562)
T ss_dssp TTCCCEECCSCC
T ss_pred CCCCEEEecCCC
Confidence 999999999877
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6.2e-24 Score=250.84 Aligned_cols=292 Identities=19% Similarity=0.219 Sum_probs=179.6
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC-CC--CCchhccCC------CCccEEEccCCCCcccch-
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF-LD--QYPAGIENL------SRLRYLKLNIPSLKSLPS- 580 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-~~--~lp~~i~~L------~~Lr~L~L~~~~i~~lp~- 580 (843)
+++|++|.+.++... . ..+..+.++++|++|+|++|. +. .+|..++++ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~---~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNL---T-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTC---S-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCC---c-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 355666666555432 1 122445555666666666655 54 355555554 566666666665555555
Q ss_pred -hHhhCCccCcEEeCCCCcCc-ccchhhhcccccccccccccccCCC--CCCCCCC-ccccccccccCCCCCCccccCCC
Q 003154 581 -SLLSNLLNLYTLDMPSSYID-HTADDIWKLNKLRHLNFGLITLPAH--PGKYCSS-LENLNFISALHPRCCTPDILGRL 655 (843)
Q Consensus 581 -~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~l~~~--~~~~l~~-L~~L~~~~~~~~~~~~~~~l~~l 655 (843)
.+ +++++|++|++++|.+. .+| .+..+++|++|++++|.+... .+..+++ |++|....+. .. .++..+..+
T Consensus 324 ~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~ 399 (636)
T 4eco_A 324 TSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAK 399 (636)
T ss_dssp HHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTT
T ss_pred hhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhc
Confidence 44 55666666666666555 555 555555666666555554421 0113344 4444432222 11 233333333
Q ss_pred C--CCceEeeecCCcchhhhhhHhhc-------CCCCCCeEEeecCC----------CCCCCceEeeccCCC---C----
Q 003154 656 P--KLGSLQICGDLNYYQSLLSKSLH-------GLSCLESLKLVNES----------KMPRLSKIVLFENQF---P---- 709 (843)
Q Consensus 656 ~--~L~~L~l~~~~~~~~~~l~~~l~-------~l~~L~~L~l~~~~----------~~~~L~~L~l~~~~l---p---- 709 (843)
+ +|+.|++++ |...+..|..+. .+.+|+.|++++|. .+++|+.|.+..+.+ |
T Consensus 400 ~l~~L~~L~Ls~--N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 400 SVSVMSAIDFSY--NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp CSSCEEEEECCS--SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred ccCccCEEECcC--CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 2 555555554 444444444444 44455555555543 244555555522211 1
Q ss_pred ----------CCccEEEEecCCCCCCCccccc--CCCCCcEEEeecccccCCccccCCCCCCcccEEEecC------ccc
Q 003154 710 ----------PSLTHLSFSNTDLIDDPMPTLE--KLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKS------MIW 771 (843)
Q Consensus 710 ----------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~------~~~ 771 (843)
++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+.+ ++.....+++|++|++++ |..
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcc
Confidence 18999999999987 6677776 99999999999999886 455556799999999954 444
Q ss_pred ccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 772 LEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 772 l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
...+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++||
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 567788888999999999999986 88998765 899999999997
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.2e-23 Score=238.83 Aligned_cols=321 Identities=16% Similarity=0.115 Sum_probs=239.7
Q ss_pred cccceEEEEEeeCCCCCcc-cccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCC
Q 003154 488 SRKRVRRFCANVNLGELDS-FDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~-~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~ 563 (843)
.+.++++|.+. ++..... +..+ +++|++|.+.++... ..+....|.++++|++|+|++|.+..+ |..+++++
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 45779999998 6665544 4445 899999999887653 345567789999999999999998855 78899999
Q ss_pred CccEEEccCCCCcc-cchh-HhhCCccCcEEeCCCCcCccc-chh-hhcccccccccccccccCCCCCCCC-----CCcc
Q 003154 564 RLRYLKLNIPSLKS-LPSS-LLSNLLNLYTLDMPSSYIDHT-ADD-IWKLNKLRHLNFGLITLPAHPGKYC-----SSLE 634 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~-lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~L~~~~l~~~~~~~l-----~~L~ 634 (843)
+|++|++++|.++. .|.. .++++++|++|++++|.+..+ |.. +..+++|++|++++|.+.......+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999986 3333 238999999999999999887 555 8899999999999998876533322 3455
Q ss_pred ccccccccCCCCCC-------ccccCCCCCCceEeeecCCcchhhhhhHhhcC---CCCCCeEEeecCC-----------
Q 003154 635 NLNFISALHPRCCT-------PDILGRLPKLGSLQICGDLNYYQSLLSKSLHG---LSCLESLKLVNES----------- 693 (843)
Q Consensus 635 ~L~~~~~~~~~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~---l~~L~~L~l~~~~----------- 693 (843)
.|....+....... ...+..+++|+.|++++ |...+..+..+.. ..+|+.|+++.+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~--n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG--NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT--SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCC--CcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 55433322111000 01134567899999997 6555555554433 3677788777542
Q ss_pred -----------CCCCCceEeec-----------cCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCcc
Q 003154 694 -----------KMPRLSKIVLF-----------ENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKL 751 (843)
Q Consensus 694 -----------~~~~L~~L~l~-----------~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 751 (843)
.+++|+.|.+. +..+ ++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+. .
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 339 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-D 339 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-C
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-C
Confidence 12467777763 3445 8999999999999887788899999999999999887543 3
Q ss_pred ccCCCCCCcccEEEecCccccccc-ccccccccccceEeeecCCCCCCCCc-cccCCCCCcEEEecCCC
Q 003154 752 ACGSDGFPKLKVLHLKSMIWLEEW-TMGNEAMPKLECLVVNPCAYLKRLPE-HLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 752 ~~~~~~f~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 818 (843)
+.....+++|++|++++|. +..+ +..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++||
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 4455779999999999987 4544 6678899999999999997 455665 56899999999999876
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.7e-23 Score=251.50 Aligned_cols=292 Identities=18% Similarity=0.215 Sum_probs=153.3
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC-CC--CCchhccCCC-------CccEEEccCCCCcccch
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF-LD--QYPAGIENLS-------RLRYLKLNIPSLKSLPS 580 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-~~--~lp~~i~~L~-------~Lr~L~L~~~~i~~lp~ 580 (843)
+++|+.|.+.++... . ..+..|.++++|++|+|++|. +. .+|..++++. +|++|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~---~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 490 LKDLTDVELYNCPNM---T-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CTTCCEEEEESCTTC---C-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCCCCEEECcCCCCC---c-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 355555555554432 1 122445555566666666554 44 2555444433 56666666655555555
Q ss_pred --hHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCC--CCCCCC-ccccccccccCCCCCCccccCCC
Q 003154 581 --SLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHP--GKYCSS-LENLNFISALHPRCCTPDILGRL 655 (843)
Q Consensus 581 --~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~--~~~l~~-L~~L~~~~~~~~~~~~~~~l~~l 655 (843)
.+ +++++|++|+|++|.+..+| .++.+++|++|++++|.+.... +..+++ |++|....+. .. .++..+..+
T Consensus 566 ~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LK-YIPNIFNAK 641 (876)
T ss_dssp HHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CC-SCCSCCCTT
T ss_pred hhhh-hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CC-cCchhhhcc
Confidence 44 55666666666666555555 5555566666665555555211 113344 4544433322 11 333334433
Q ss_pred CC--CceEeeecCCcchhhhhh---Hhhc--CCCCCCeEEeecCC----------CCCCCceEeeccCCC---C------
Q 003154 656 PK--LGSLQICGDLNYYQSLLS---KSLH--GLSCLESLKLVNES----------KMPRLSKIVLFENQF---P------ 709 (843)
Q Consensus 656 ~~--L~~L~l~~~~~~~~~~l~---~~l~--~l~~L~~L~l~~~~----------~~~~L~~L~l~~~~l---p------ 709 (843)
+. |+.|++++ |...+.+| ..+. .+++|+.|++++|. .+++|+.|.+..+.+ |
T Consensus 642 ~~~~L~~L~Ls~--N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 642 SVYVMGSVDFSY--NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp CSSCEEEEECCS--SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccCCCCEEECcC--CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 32 56666654 33332222 1111 22356666666543 345566665532211 1
Q ss_pred --------CCccEEEEecCCCCCCCccccc--CCCCCcEEEeecccccCCccccCCCCCCcccEEEecC------ccccc
Q 003154 710 --------PSLTHLSFSNTDLIDDPMPTLE--KLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKS------MIWLE 773 (843)
Q Consensus 710 --------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~------~~~l~ 773 (843)
++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ ++.....+++|+.|+|++ |....
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 05666777766665 4555554 66777777777666654 333344566677776655 33334
Q ss_pred ccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 774 EWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 774 ~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.+|..++.+++|+.|++++|.. ..+|..+. ++|+.|++++|+
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 4555666677777777776664 66666543 567777777766
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=4.3e-24 Score=258.09 Aligned_cols=301 Identities=20% Similarity=0.181 Sum_probs=162.4
Q ss_pred CCcccEEEcCCCCCC-CCchhccCCCCccEEEccCCCCc-ccchhHhhCCccCcEEeCCCCcCc-ccchhhhccc-cccc
Q 003154 539 FKFLRVLDLGSLFLD-QYPAGIENLSRLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPSSYID-HTADDIWKLN-KLRH 614 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~ 614 (843)
++.|++|+|++|.+. .+|..++++++|++|++++|.+. .+|...++++++|++|++++|.+. .+|..+..++ +|++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 456666666666554 55556666666666666666665 555553366666666666666554 5555565555 5666
Q ss_pred ccccccccCCCCCC-----------------------------CCCCccccccccccCCCCCCccccCCCCCCceEeeec
Q 003154 615 LNFGLITLPAHPGK-----------------------------YCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICG 665 (843)
Q Consensus 615 L~L~~~~l~~~~~~-----------------------------~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 665 (843)
|++++|.+.+...+ .+++|++|....+. ....++..++.+++|+.|++++
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCC
Confidence 66555544332111 33444444422221 2223344466666666666665
Q ss_pred CCcchhhhhhHhhcCCCCCCeEEeecCC----------CCCCCceEeec-----------cCCCCCCccEEEEecCCCCC
Q 003154 666 DLNYYQSLLSKSLHGLSCLESLKLVNES----------KMPRLSKIVLF-----------ENQFPPSLTHLSFSNTDLID 724 (843)
Q Consensus 666 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~-----------~~~lp~~L~~L~L~~~~l~~ 724 (843)
|...+.+|..+..+++|+.|++++|. .+++|+.|.+. +..+ ++|+.|+|++|.+.+
T Consensus 452 --n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 452 --NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSG 528 (768)
T ss_dssp --SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEE
T ss_pred --CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccC
Confidence 44555556666666677777766653 35566666662 2333 567777777776666
Q ss_pred CCcccccCCCCCcEEEeecccccCCc------------------------------------------------------
Q 003154 725 DPMPTLEKLPYLQVLKLKQNSYSGRK------------------------------------------------------ 750 (843)
Q Consensus 725 ~~~~~l~~l~~L~~L~L~~~~~~~~~------------------------------------------------------ 750 (843)
..|..++.+++|+.|+|++|.+.+..
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 66666666666666666666544211
Q ss_pred ---------------------------------------cccCCCCCCcccEEEecCcccccccccccccccccceEeee
Q 003154 751 ---------------------------------------LACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVN 791 (843)
Q Consensus 751 ---------------------------------------~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~ 791 (843)
++...+.+++|+.|+|++|.....+|..++.+++|+.|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 11112334455555555555333555566666777777777
Q ss_pred cCCCCCCCCccccCCCCCcEEEecCCCH-----H------H---------------HHhcccCCCCCCcccccCCCCC
Q 003154 792 PCAYLKRLPEHLWCMKNFKKLELWWPQP-----E------L---------------RQKMRDFEDTEPYDIQIYPFGM 843 (843)
Q Consensus 792 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~-----~------~---------------~~~~~~~~~~~~~ki~~ip~~~ 843 (843)
+|.....+|..+.++++|+.|++++|+- + + ...|....+++|+||+|+|..+
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 7766666777777777777777777641 0 0 0134455678899999998764
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.9e-23 Score=224.35 Aligned_cols=300 Identities=15% Similarity=0.138 Sum_probs=218.6
Q ss_pred ccceEEEEEeeCCCCCcccccc-ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccE
Q 003154 489 RKRVRRFCANVNLGELDSFDRL-DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRY 567 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~ 567 (843)
..+++++.+. +......+.-. +++|++|.+.++... .++. +.++++|++|++++|.+..+| .+..+++|++
T Consensus 43 l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~i~----~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQIT----DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEe-CCccccchhhhhcCCccEEEccCCccc----cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 4567888888 65555444322 888999998887653 2222 788899999999999888876 6888999999
Q ss_pred EEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCC-CCCCCCccccccccccCCCC
Q 003154 568 LKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHP-GKYCSSLENLNFISALHPRC 646 (843)
Q Consensus 568 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~-~~~l~~L~~L~~~~~~~~~~ 646 (843)
|++++|.+..+|+ + .++++|++|++++|.....+..+..+++|++|++++|.+.... +..+++|++|....+. ..
T Consensus 115 L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~--l~ 190 (347)
T 4fmz_A 115 LYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ--IE 190 (347)
T ss_dssp EECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC--CC
T ss_pred EECcCCcccCchh-h-ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc--cc
Confidence 9999999888877 4 8899999999999844444444888999999998877766532 3356667777644432 22
Q ss_pred CCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCC
Q 003154 647 CTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDP 726 (843)
Q Consensus 647 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 726 (843)
.++. +..+++|+.|++++ +......+ +..+++|+.|++++|. +..+. .+..+ ++|+.|++++|.+..
T Consensus 191 ~~~~-~~~l~~L~~L~l~~--n~l~~~~~--~~~~~~L~~L~l~~n~----l~~~~-~~~~l-~~L~~L~l~~n~l~~-- 257 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYV--NQITDITP--VANMTRLNSLKIGNNK----ITDLS-PLANL-SQLTWLEIGTNQISD-- 257 (347)
T ss_dssp CCGG-GGGCTTCCEEECCS--SCCCCCGG--GGGCTTCCEEECCSSC----CCCCG-GGTTC-TTCCEEECCSSCCCC--
T ss_pred cccc-ccCCCccceeeccc--CCCCCCch--hhcCCcCCEEEccCCc----cCCCc-chhcC-CCCCEEECCCCccCC--
Confidence 3334 77788888888886 43333222 6678888888888654 22222 14556 899999999998765
Q ss_pred cccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCC
Q 003154 727 MPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCM 806 (843)
Q Consensus 727 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l 806 (843)
.+.+..+++|+.|++++|.+.+. .....+++|+.|++++|......+..++.+|+|+.|++++|+ +..++. +..+
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l 332 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASL 332 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGC
T ss_pred ChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhh
Confidence 35788899999999998887764 234568999999999987444445556789999999999998 444554 7889
Q ss_pred CCCcEEEecCCC
Q 003154 807 KNFKKLELWWPQ 818 (843)
Q Consensus 807 ~~L~~L~l~~~~ 818 (843)
++|++|++++|+
T Consensus 333 ~~L~~L~l~~N~ 344 (347)
T 4fmz_A 333 SKMDSADFANQV 344 (347)
T ss_dssp TTCSEESSSCC-
T ss_pred hccceeehhhhc
Confidence 999999999987
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=242.72 Aligned_cols=142 Identities=20% Similarity=0.159 Sum_probs=107.6
Q ss_pred hHhhcCCCCCCeEEeecCC---------CCCCCceEeecc------------CCCCCCccEEEEecCCCCCCCcccccCC
Q 003154 675 SKSLHGLSCLESLKLVNES---------KMPRLSKIVLFE------------NQFPPSLTHLSFSNTDLIDDPMPTLEKL 733 (843)
Q Consensus 675 ~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l~~------------~~lp~~L~~L~L~~~~l~~~~~~~l~~l 733 (843)
+..+..+++|+.|++++|. .+++|+.|.+.. ..+ ++|+.|++++|.+.+..+..++.+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcC
Confidence 3455566777777776653 466777777622 234 788888888888877777788889
Q ss_pred CCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc-ccccccccccceEeeecCCCCCCCCccccCCCCCcEE
Q 003154 734 PYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW-TMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKL 812 (843)
Q Consensus 734 ~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 812 (843)
++|+.|++++|.+.+..++.....+++|++|++++|. +..+ +..++.+++|+.|++++|......|..+.++++|+.|
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 9999999998887644455666778999999999987 4444 6677889999999999997544444568899999999
Q ss_pred EecCCC
Q 003154 813 ELWWPQ 818 (843)
Q Consensus 813 ~l~~~~ 818 (843)
++.+||
T Consensus 524 ~l~~N~ 529 (570)
T 2z63_A 524 WLHTNP 529 (570)
T ss_dssp ECCSSC
T ss_pred EecCCc
Confidence 999866
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=4.6e-23 Score=247.82 Aligned_cols=294 Identities=15% Similarity=0.115 Sum_probs=221.1
Q ss_pred ccceEEEEEeeCCCCCcccccc--ccceeEEEeecCC-CCCCCCcchHHHhc-------cCCcccEEEcCCCCCCCCch-
Q 003154 489 RKRVRRFCANVNLGELDSFDRL--DSYLHSFLYLSPE-SDHLNPRDSMKICK-------MFKFLRVLDLGSLFLDQYPA- 557 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~-~~~~~~~~~~~~~~-------~~~~LrvL~L~~~~~~~lp~- 557 (843)
..+.++|.+..+.....++..+ +++|+.|.+.++. .. ....+..+. .+++|++|+|++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4678999998333344466666 8999999999886 32 101233333 45599999999999999999
Q ss_pred -hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccc-cccccccccccCCCC--CCC--CC
Q 003154 558 -GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNK-LRHLNFGLITLPAHP--GKY--CS 631 (843)
Q Consensus 558 -~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~L~~~~l~~~~--~~~--l~ 631 (843)
.++++++|++|++++|.++.+| .+ +++++|++|+|++|.+..+|..+..+++ |++|++++|.+.... +.. .+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 9999999999999999999999 65 9999999999999999999999999999 999999999887321 112 23
Q ss_pred CccccccccccCCCCCCcc---ccC--CCCCCceEeeecCCcchhhhhhHhh-cCCCCCCeEEeecCC---------C--
Q 003154 632 SLENLNFISALHPRCCTPD---ILG--RLPKLGSLQICGDLNYYQSLLSKSL-HGLSCLESLKLVNES---------K-- 694 (843)
Q Consensus 632 ~L~~L~~~~~~~~~~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~---------~-- 694 (843)
+|+.|....+. ....++. .++ .+++|+.|++++ |... .+|..+ ..+++|+.|++++|. .
T Consensus 645 ~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~--N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 645 VMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSY--NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp CEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCS--SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred CCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccC--CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 47777644433 2222222 123 345889999987 5444 455544 478899999998764 1
Q ss_pred ------CCCCceEeecc----------C--CCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeec------ccccCCc
Q 003154 695 ------MPRLSKIVLFE----------N--QFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQ------NSYSGRK 750 (843)
Q Consensus 695 ------~~~L~~L~l~~----------~--~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~------~~~~~~~ 750 (843)
+++|+.|.+.. . .+ ++|+.|+|++|.+.+ +|..++.+++|+.|+|++ |.+.+ .
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l-~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ 797 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL-PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR-Q 797 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC-TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC-C
T ss_pred cccccccCCccEEECCCCCCccchHHhhhccC-CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc-c
Confidence 11788888732 2 45 799999999999876 788899999999999986 44444 3
Q ss_pred cccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCC
Q 003154 751 LACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLK 797 (843)
Q Consensus 751 ~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~ 797 (843)
++.....+++|+.|+|++|. +..+|... +++|+.|+|++|+...
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNPNIS 841 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCTTCE
T ss_pred ChHHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCCCCc
Confidence 34455679999999999997 58888764 4899999999999654
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=7.6e-23 Score=241.13 Aligned_cols=272 Identities=18% Similarity=0.152 Sum_probs=165.0
Q ss_pred cccEEEcCCCCCCCCchh-ccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFG 618 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 618 (843)
.|+.|++++|.+..++.. ++.+++|++|++++|.++.+|..+ +++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 455566666655544433 666777777777777777777766 7777777777777777666 4457777777777777
Q ss_pred ccccCCC----CCCCCCCccccccccccCCCCC-CccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC
Q 003154 619 LITLPAH----PGKYCSSLENLNFISALHPRCC-TPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES 693 (843)
Q Consensus 619 ~~~l~~~----~~~~l~~L~~L~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 693 (843)
+|.+... .+..+++|++|....+...... .+..++.+++|+.|++++ +......+..+..+++|+.|++++|.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY--NEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS--CSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC--CcCCcCCHHHhcCCccCCeEECCCCc
Confidence 6665432 1225566666654333211111 122366777777777776 54445555666777777777777653
Q ss_pred -----------CCCCCceEeecc-----------CCCCCCccEEEEecCCCCCC---CcccccCCCCCcEEEeecccccC
Q 003154 694 -----------KMPRLSKIVLFE-----------NQFPPSLTHLSFSNTDLIDD---PMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 694 -----------~~~~L~~L~l~~-----------~~lp~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
.+++|+.|.++. ..+ ++|+.|++++|.+.+. .+..++.+++|+.|++++|.+.+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 234556555522 223 5666666666665442 12345666666666666665543
Q ss_pred CccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 749 RKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 749 ~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
. .+.....+++|++|++++|......+..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 491 ~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 I-DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp E-CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred c-ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 2 22334556777777777765333345556667777 77777776554445566777888888888776
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=5.4e-23 Score=242.37 Aligned_cols=321 Identities=18% Similarity=0.093 Sum_probs=201.2
Q ss_pred cccceEEEEEeeCCCCCcc-cccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCC
Q 003154 488 SRKRVRRFCANVNLGELDS-FDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~-~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~ 563 (843)
.+..+++|.+. ++..... +..+ +++|++|.+.++... .+.+..|.++++|++|+|++|.+..+ |..+++++
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 45678888888 5555544 3344 788888888777652 34456678888888888888887744 66788888
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccc-hhhhcccccccccccccccCCCC---CCCCCCcc--ccc
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLITLPAHP---GKYCSSLE--NLN 637 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~l~~~~---~~~l~~L~--~L~ 637 (843)
+|++|++++|.++.+++..++++++|++|++++|.+..++ ..+..+++|++|++++|.+.... +..+++|+ +|.
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 8888888888888774433488888888888888887762 33445888888888777766432 12555666 333
Q ss_pred cccccCCCCCCccccCCCC----------------------------------------------------CCceEeeec
Q 003154 638 FISALHPRCCTPDILGRLP----------------------------------------------------KLGSLQICG 665 (843)
Q Consensus 638 ~~~~~~~~~~~~~~l~~l~----------------------------------------------------~L~~L~l~~ 665 (843)
...+. .....+. ..... +|+.|++.+
T Consensus 186 l~~n~-l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 186 LNGND-IAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp CTTCC-CCEECTT-TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred cCCCc-cCccChh-HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 22211 1111111 11112 233333333
Q ss_pred CCcchhhhhhHhhcCCCCCCeEEeecCC---------CCCCCceEeecc-----------CCCCCCccEEEEecCCCCCC
Q 003154 666 DLNYYQSLLSKSLHGLSCLESLKLVNES---------KMPRLSKIVLFE-----------NQFPPSLTHLSFSNTDLIDD 725 (843)
Q Consensus 666 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l~~-----------~~lp~~L~~L~L~~~~l~~~ 725 (843)
+......+..+..+++|+.|+++++. .+++|+.|.+.. ..+ ++|+.|++++|.+.+.
T Consensus 264 --n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 264 --HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE 340 (606)
T ss_dssp --CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCB
T ss_pred --CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccc
Confidence 22222223346666777777777653 345555555522 234 6777777777766544
Q ss_pred Ccc-cccCCCCCcEEEeecccccCCcc-ccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCc-c
Q 003154 726 PMP-TLEKLPYLQVLKLKQNSYSGRKL-ACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPE-H 802 (843)
Q Consensus 726 ~~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~-~ 802 (843)
.+. .++.+++|+.|++++|.+.+... +.....+++|++|++++|......+..+..+++|+.|++++|......|. .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 433 36777778888877776654321 23445677888888887763333355567788888888888875554443 3
Q ss_pred ccCCCCCcEEEecCCC
Q 003154 803 LWCMKNFKKLELWWPQ 818 (843)
Q Consensus 803 l~~l~~L~~L~l~~~~ 818 (843)
+.++++|+.|++++|.
T Consensus 421 ~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTCTTCCEEECTTCC
T ss_pred hhCcccCCEEECCCCc
Confidence 7788888888888875
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.1e-22 Score=227.78 Aligned_cols=302 Identities=21% Similarity=0.225 Sum_probs=169.0
Q ss_pred cceEEEEEeeCCCCCcccccc-ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEE
Q 003154 490 KRVRRFCANVNLGELDSFDRL-DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYL 568 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L 568 (843)
..++.+.+. +.....++.-. +++|++|.+.++... .+++ +.++++|++|++++|.+..++. ++++++|++|
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccC----Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 467777777 55554444322 788888888777653 2222 7788888888888888877776 8888888888
Q ss_pred EccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCC-CCCCCCCccccccccccCCCCC
Q 003154 569 KLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAH-PGKYCSSLENLNFISALHPRCC 647 (843)
Q Consensus 569 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~-~~~~l~~L~~L~~~~~~~~~~~ 647 (843)
++++|.++.+|+ + .++++|++|++++|.+..+|. +..+++|++|++++ .+... .+..+++|+.|....+. ...
T Consensus 118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~--l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNK--VSD 191 (466)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSC--CCC
T ss_pred ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cccCchhhccCCCCCEEECcCCc--CCC
Confidence 888888888776 4 788888888888887776653 55666666655542 11111 11233444444322221 111
Q ss_pred CccccCCCCCCceEeeecCCcchhhhhh--------------------HhhcCCCCCCeEEeecCC--------CCCCCc
Q 003154 648 TPDILGRLPKLGSLQICGDLNYYQSLLS--------------------KSLHGLSCLESLKLVNES--------KMPRLS 699 (843)
Q Consensus 648 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~--------------------~~l~~l~~L~~L~l~~~~--------~~~~L~ 699 (843)
++. +..+++|+.|++++ +...+..+ ..+..+++|+.|++++|. .+++|+
T Consensus 192 ~~~-l~~l~~L~~L~l~~--n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 268 (466)
T 1o6v_A 192 ISV-LAKLTNLESLIATN--NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268 (466)
T ss_dssp CGG-GGGCTTCSEEECCS--SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred Chh-hccCCCCCEEEecC--CcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCC
Confidence 122 44444444444443 22111111 233445555555555432 334455
Q ss_pred eEeeccC---------CCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 700 KIVLFEN---------QFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 700 ~L~l~~~---------~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
.|.+..+ .+ ++|+.|++++|.+.+. +.++.+++|+.|++++|.+.+... ...+++|+.|++++|.
T Consensus 269 ~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 269 ELKLGANQISNISPLAGL-TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp EEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSC
T ss_pred EEECCCCccCccccccCC-CccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCc
Confidence 5544222 22 4555555555555432 125556666666666555554321 2345666666666653
Q ss_pred cccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 771 WLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 771 ~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
+..++ .+..+++|+.|++++|+... ++. +..+++|+.|++.+|+
T Consensus 343 -l~~~~-~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 343 -VSDVS-SLANLTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp -CCCCG-GGTTCTTCCEEECCSSCCCB-CGG-GTTCTTCCEEECCCEE
T ss_pred -cCCch-hhccCCCCCEEeCCCCccCc-cch-hhcCCCCCEEeccCCc
Confidence 44442 35566667777776665433 332 6667777777776664
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.1e-22 Score=227.73 Aligned_cols=258 Identities=22% Similarity=0.229 Sum_probs=185.1
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
++++++|.+.++.... ++ .+..+++|++|+|++|.+..+|. ++++++|++|++++|.+..+++ + +++++|+
T Consensus 45 l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCC
T ss_pred hccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCC
Confidence 6789999998877642 22 37889999999999999998887 9999999999999999999988 5 9999999
Q ss_pred EEeCCCCcCcccchhhhcccccccccccccccCCC-CCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcc
Q 003154 591 TLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAH-PGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNY 669 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 669 (843)
+|++++|.+..+|. +..+++|++|++++|.+... .+..+++|++|... ........ ++.+++|+.|++++ +.
T Consensus 116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~---~~~~~~~~-~~~l~~L~~L~l~~--n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG---NQVTDLKP-LANLTTLERLDISS--NK 188 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE---ESCCCCGG-GTTCTTCCEEECCS--SC
T ss_pred EEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC---CcccCchh-hccCCCCCEEECcC--Cc
Confidence 99999999999976 99999999999999988764 23367777777642 22333444 89999999999997 43
Q ss_pred hhhhhhHhhcCCCCCCeEEeecCC--------CCCCCceEeeccC---------CCCCCccEEEEecCCCCCCCcccccC
Q 003154 670 YQSLLSKSLHGLSCLESLKLVNES--------KMPRLSKIVLFEN---------QFPPSLTHLSFSNTDLIDDPMPTLEK 732 (843)
Q Consensus 670 ~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l~~~---------~lp~~L~~L~L~~~~l~~~~~~~l~~ 732 (843)
... + ..+..+++|++|+++++. .+++|+.|.+..+ .+ ++|+.|++++|.+.+.. .++.
T Consensus 189 l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~--~~~~ 263 (466)
T 1o6v_A 189 VSD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLA--PLSG 263 (466)
T ss_dssp CCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCG--GGTT
T ss_pred CCC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccch--hhhc
Confidence 322 2 347788999999998764 4567777777333 23 67777777777765432 2666
Q ss_pred CCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCC
Q 003154 733 LPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCA 794 (843)
Q Consensus 733 l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~ 794 (843)
+++|+.|++++|.+.+... ...+++|+.|++++|. +..++. .+.+++|+.|++++|.
T Consensus 264 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred CCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc
Confidence 6777777776666554321 3345555555555543 333322 3344444444444443
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=4.9e-23 Score=243.16 Aligned_cols=303 Identities=15% Similarity=0.126 Sum_probs=228.7
Q ss_pred ccccc--ccceeEEEeecCCCCCC--C-Cc----------chHHHhc--cCCcccEEEcCCCCCC-CCchhccCCCCccE
Q 003154 506 SFDRL--DSYLHSFLYLSPESDHL--N-PR----------DSMKICK--MFKFLRVLDLGSLFLD-QYPAGIENLSRLRY 567 (843)
Q Consensus 506 ~~~~~--~~~LrsL~~~~~~~~~~--~-~~----------~~~~~~~--~~~~LrvL~L~~~~~~-~lp~~i~~L~~Lr~ 567 (843)
++..+ +++|++|.+.++..... . .+ ..+..+. ++++|++|+|++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 44445 88999999998875310 0 00 0344555 9999999999999865 89999999999999
Q ss_pred EEccCCC-Ccc--cchhHhhCC------ccCcEEeCCCCcCcccch--hhhcccccccccccccccCCC-C-CCCCCCcc
Q 003154 568 LKLNIPS-LKS--LPSSLLSNL------LNLYTLDMPSSYIDHTAD--DIWKLNKLRHLNFGLITLPAH-P-GKYCSSLE 634 (843)
Q Consensus 568 L~L~~~~-i~~--lp~~i~~~L------~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~l~~~-~-~~~l~~L~ 634 (843)
|++++|. ++. +|..+ +++ ++|++|++++|.+..+|. .++.+++|++|++++|.+.+. . +..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 9999998 884 89888 877 999999999999999998 899999999999999988742 2 22556677
Q ss_pred ccccccccCCCCCCccccCCCCC-CceEeeecCCcchhhhhhHhhcCCC--CCCeEEeecCC-----------------C
Q 003154 635 NLNFISALHPRCCTPDILGRLPK-LGSLQICGDLNYYQSLLSKSLHGLS--CLESLKLVNES-----------------K 694 (843)
Q Consensus 635 ~L~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~--~L~~L~l~~~~-----------------~ 694 (843)
+|....+. .. .++..+..+++ |+.|++++ |... .+|..+..+. +|+.|+++.|. .
T Consensus 357 ~L~L~~N~-l~-~lp~~l~~l~~~L~~L~Ls~--N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 357 SLNLAYNQ-IT-EIPANFCGFTEQVENLSFAH--NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEECCSSE-EE-ECCTTSEEECTTCCEEECCS--SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred EEECCCCc-cc-cccHhhhhhcccCcEEEccC--CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 66644332 22 55555888999 99999997 5544 6777766654 89999999864 1
Q ss_pred CCCCceEeeccCCC---C-------CCccEEEEecCCCCCCCccc-ccC-------CCCCcEEEeecccccCCccccCCC
Q 003154 695 MPRLSKIVLFENQF---P-------PSLTHLSFSNTDLIDDPMPT-LEK-------LPYLQVLKLKQNSYSGRKLACGSD 756 (843)
Q Consensus 695 ~~~L~~L~l~~~~l---p-------~~L~~L~L~~~~l~~~~~~~-l~~-------l~~L~~L~L~~~~~~~~~~~~~~~ 756 (843)
+++|+.|.+..+.+ | ++|+.|++++|.+. .+|.. +.. +++|+.|+|++|.+.. ++....
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~ 508 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFR 508 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGGS
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCc--cChhhh
Confidence 23677777643321 1 68889999998887 34433 322 3389999999888773 333333
Q ss_pred --CCCcccEEEecCcccccccccccccccccceEeee------cCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 757 --GFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVN------PCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 757 --~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~------~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.+++|+.|++++|. +..+|..++.+++|+.|+++ +|.....+|..+.++++|++|++++|.
T Consensus 509 ~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 78999999999876 55688888889999999995 455567788888899999999999887
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4e-22 Score=217.75 Aligned_cols=278 Identities=20% Similarity=0.216 Sum_probs=219.8
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
++++++|.+.++.... + ..+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+|. + .++++|+
T Consensus 43 l~~L~~L~l~~~~i~~----~--~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----I--QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-L-QNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCS
T ss_pred cccccEEEEeCCcccc----c--hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH-H-cCCCcCC
Confidence 7899999999877642 2 237889999999999999998887 9999999999999999999864 5 9999999
Q ss_pred EEeCCCCcCcccchhhhcccccccccccccccCCC--CCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCc
Q 003154 591 TLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAH--PGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLN 668 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 668 (843)
+|++++|.+..+|. +..+++|++|++++|..... .+..+++|++|....+. ...++. +..+++|+.|++++ +
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-~~~l~~L~~L~l~~--n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VKDVTP-IANLTDLYSLSLNY--N 187 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC--CCCCGG-GGGCTTCSEEECTT--S
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC--cCCchh-hccCCCCCEEEccC--C
Confidence 99999999999987 89999999999888754332 22266677777644432 222333 77889999999987 4
Q ss_pred chhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccC
Q 003154 669 YYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 669 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
.... ++. +..+++|+.|+++++. +..+. .+..+ ++|+.|++++|.+.... + +..+++|+.|++++|.+..
T Consensus 188 ~l~~-~~~-~~~l~~L~~L~l~~n~----l~~~~-~~~~~-~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 188 QIED-ISP-LASLTSLHYFTAYVNQ----ITDIT-PVANM-TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCCC-CGG-GGGCTTCCEEECCSSC----CCCCG-GGGGC-TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred cccc-ccc-ccCCCccceeecccCC----CCCCc-hhhcC-CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCC
Confidence 3332 222 6778899999998654 22221 14456 89999999999986543 3 8999999999999998876
Q ss_pred CccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 749 RKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 749 ~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
. .....+++|++|++++|. +..++ .+..+++|+.|++++|+.....|..+..+++|+.|++++|+
T Consensus 258 ~---~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 258 I---NAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp C---GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred C---hhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 3 235679999999999985 66664 46789999999999998666667788999999999999998
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.2e-22 Score=239.40 Aligned_cols=135 Identities=16% Similarity=0.064 Sum_probs=111.6
Q ss_pred CCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCccc
Q 003154 500 NLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSL 578 (843)
Q Consensus 500 ~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~l 578 (843)
+.....+|..+.+++++|.+.++... .++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.++.+
T Consensus 20 ~~~l~~ip~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 20 DQKLSKVPDDIPSSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TSCCSSCCTTSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCCcccCCCCCCCCcCEEECCCCCcC----EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence 33444466656889999999988763 45566899999999999999999866 66799999999999999999988
Q ss_pred chhHhhCCccCcEEeCCCCcCcccc-hhhhcccccccccccccccCCCCCC----CCCCcccccc
Q 003154 579 PSSLLSNLLNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLITLPAHPGK----YCSSLENLNF 638 (843)
Q Consensus 579 p~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~----~l~~L~~L~~ 638 (843)
++..|+++++|++|++++|.+..+| ..++++++|++|++++|.+....+| .+++|++|..
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 5544499999999999999998886 6799999999999999998865444 5667766654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.9e-22 Score=229.02 Aligned_cols=305 Identities=15% Similarity=0.091 Sum_probs=233.4
Q ss_pred CccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCC-CC-chhccCCCCccEEEccCCCCcccchh
Q 003154 504 LDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLD-QY-PAGIENLSRLRYLKLNIPSLKSLPSS 581 (843)
Q Consensus 504 ~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~-~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~ 581 (843)
..++. +.+++++|.+.++... ...+..|.++++|++|+|++|.+. .+ |..+.++++|++|++++|.+..+++.
T Consensus 23 ~~lp~-l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 23 HQVPE-LPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp SSCCC-CCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred ccCCC-CCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 33444 5688999999988763 355677899999999999999876 44 56799999999999999999987554
Q ss_pred HhhCCccCcEEeCCCCcCcc-cchh--hhcccccccccccccccCCCC----CCCCCCccccccccccCCCCCCccccCC
Q 003154 582 LLSNLLNLYTLDMPSSYIDH-TADD--IWKLNKLRHLNFGLITLPAHP----GKYCSSLENLNFISALHPRCCTPDILGR 654 (843)
Q Consensus 582 i~~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~l~~~~----~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 654 (843)
.|+++++|++|++++|.+.. +|.. +..+++|++|++++|.+.... +..+++|++|....+. .....+..+..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhc
Confidence 44999999999999999876 3554 889999999999999987753 2256777777644433 22223333554
Q ss_pred C--CCCceEeeecCCcchhhh--------hhHhhcCCCCCCeEEeecCC-------------CCCCCceEeeccCCC---
Q 003154 655 L--PKLGSLQICGDLNYYQSL--------LSKSLHGLSCLESLKLVNES-------------KMPRLSKIVLFENQF--- 708 (843)
Q Consensus 655 l--~~L~~L~l~~~~~~~~~~--------l~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~l~~~~l--- 708 (843)
+ .+|+.|++++ +..... ....+..+++|+.|++++|. ..++|+.|.+..+..
T Consensus 177 l~~~~L~~L~l~~--n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 177 FQGKHFTLLRLSS--ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GTTCEEEEEECTT--CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccccc--CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 4 5788888886 332221 11224466889999999874 236788887643210
Q ss_pred -------------------CCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCc
Q 003154 709 -------------------PPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSM 769 (843)
Q Consensus 709 -------------------p~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~ 769 (843)
+++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+. .+.....+++|++|++++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCC
Confidence 15899999999999888888999999999999999988753 2344567999999999998
Q ss_pred cccccc-ccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 770 IWLEEW-TMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 770 ~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
. +..+ +..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 334 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 334 F-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp C-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred c-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 6 5555 5567889999999999998655557889999999999999986
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.6e-22 Score=218.61 Aligned_cols=233 Identities=22% Similarity=0.191 Sum_probs=183.9
Q ss_pred cCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccc
Q 003154 538 MFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNF 617 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 617 (843)
....+++|+|+++.+..+|..++++++|++|++++|.++.+|..+ +++++|++|+|++|.+..+|..+..+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 358899999999999999999999999999999999999999988 9999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPR 697 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 697 (843)
++|.+.+.....+.. . .....++.+++|+.|++++ |... .+|.
T Consensus 158 ~~n~~~~~~p~~~~~---~----------~~~~~~~~l~~L~~L~L~~--n~l~-~lp~--------------------- 200 (328)
T 4fcg_A 158 RACPELTELPEPLAS---T----------DASGEHQGLVNLQSLRLEW--TGIR-SLPA--------------------- 200 (328)
T ss_dssp EEETTCCCCCSCSEE---E----------C-CCCEEESTTCCEEEEEE--ECCC-CCCG---------------------
T ss_pred CCCCCccccChhHhh---c----------cchhhhccCCCCCEEECcC--CCcC-cchH---------------------
Confidence 887654421111100 0 0011134455555555554 2211 2222
Q ss_pred CceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccc
Q 003154 698 LSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTM 777 (843)
Q Consensus 698 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~ 777 (843)
++..+ ++|+.|++++|.+.+ .++.++.+++|+.|+|++|.+.+. ++.....+++|++|++++|..+..+|.
T Consensus 201 ------~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 201 ------SIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp ------GGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred ------hhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcch
Confidence 33445 677778888887764 566788999999999998887764 444567799999999999998888998
Q ss_pred ccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCC
Q 003154 778 GNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWP 817 (843)
Q Consensus 778 ~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 817 (843)
.++.+++|+.|++++|+.++.+|..+.++++|+.+++...
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8999999999999999999999999999999999988753
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=4.4e-22 Score=237.89 Aligned_cols=323 Identities=19% Similarity=0.122 Sum_probs=201.6
Q ss_pred cccceEEEEEeeCCCCCcccc-cc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCch-hccCCC
Q 003154 488 SRKRVRRFCANVNLGELDSFD-RL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPA-GIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~-~i~~L~ 563 (843)
.+.++++|.+. ++.....+. .+ +++|++|.+.++... ...+..|.++++|++|+|++|.+..+|. .+++++
T Consensus 23 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 23 LPTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp SCTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 45678999998 655554444 34 789999999887653 3455778889999999999999888886 588999
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCCCCC-----CCCCccccc
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAHPGK-----YCSSLENLN 637 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~-----~l~~L~~L~ 637 (843)
+|++|++++|.+..+|+..|+++++|++|++++|.+... |..+..+++|++|++++|.+.+.... .+++|++|.
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 999999999999888865458999999999999987766 45577888888888888776543111 234555554
Q ss_pred cccccCC--------------------------------------------------CCCCccccCCCC--CCceEeeec
Q 003154 638 FISALHP--------------------------------------------------RCCTPDILGRLP--KLGSLQICG 665 (843)
Q Consensus 638 ~~~~~~~--------------------------------------------------~~~~~~~l~~l~--~L~~L~l~~ 665 (843)
...+... ....+..+..++ +|+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 3222100 000111122232 366666665
Q ss_pred CCcchhhhhhHhhcCCCCCCeEEeecCC----------CCCCCceEeec--------------------cCCCCCCccEE
Q 003154 666 DLNYYQSLLSKSLHGLSCLESLKLVNES----------KMPRLSKIVLF--------------------ENQFPPSLTHL 715 (843)
Q Consensus 666 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~--------------------~~~lp~~L~~L 715 (843)
+......+..+..+++|+.|++++|. .+++|+.|.+. +..+ ++|+.|
T Consensus 258 --n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L 334 (680)
T 1ziw_A 258 --NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHL 334 (680)
T ss_dssp --SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEE
T ss_pred --CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEE
Confidence 43444445566777778888777653 45667776652 2234 788888
Q ss_pred EEecCCCCCCCcccccCCCCCcEEEeecccccCCccccC---CCCCCcccEEEecCcccccccccccccccccceEeeec
Q 003154 716 SFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACG---SDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNP 792 (843)
Q Consensus 716 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~---~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~ 792 (843)
++++|.+.+..+..++.+++|++|++++|.+....++.. ....++|+.|++++|......+..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 888888877777778888888888888765433221110 00113455555554432222233344455555555555
Q ss_pred CCCCCCCC-ccccCCCCCcEEEecCCC
Q 003154 793 CAYLKRLP-EHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 793 c~~l~~lp-~~l~~l~~L~~L~l~~~~ 818 (843)
|.....+| ..+.++++|++|++++|.
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CcCccccCcccccCcccccEEecCCCC
Confidence 54333333 234444444544444443
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.4e-22 Score=233.86 Aligned_cols=316 Identities=16% Similarity=0.161 Sum_probs=181.6
Q ss_pred cceEEEEEeeCCCCCcc-cccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCCCc
Q 003154 490 KRVRRFCANVNLGELDS-FDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLSRL 565 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~~-~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~~L 565 (843)
..+++|.+. ++..... +..+ +++|++|.+.++... ..++..|.++++|++|+|++|.+..+|.. ++++++|
T Consensus 26 ~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 456666666 4443323 2233 566666666665542 23344566666666666666666655543 6666666
Q ss_pred cEEEccCCCCccc--chhHhhCCccCcEEeCCCCc-Ccccc-hhhhcccccccccccccccCCCC---CCCCCCcccccc
Q 003154 566 RYLKLNIPSLKSL--PSSLLSNLLNLYTLDMPSSY-IDHTA-DDIWKLNKLRHLNFGLITLPAHP---GKYCSSLENLNF 638 (843)
Q Consensus 566 r~L~L~~~~i~~l--p~~i~~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~L~~~~l~~~~---~~~l~~L~~L~~ 638 (843)
++|++++|.++.+ |..+ +++++|++|++++|. +..+| ..+..+++|++|++++|.+.+.. +..+++|++|..
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 6666666666632 3444 666666666666664 55554 34666666666666666655422 223444444442
Q ss_pred ccccCCCCCCcc-ccCCCCCCceEeeecCCcchhhh-------------------------------hhHhhcCCCCCCe
Q 003154 639 ISALHPRCCTPD-ILGRLPKLGSLQICGDLNYYQSL-------------------------------LSKSLHGLSCLES 686 (843)
Q Consensus 639 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-------------------------------l~~~l~~l~~L~~ 686 (843)
.... . ..++. .++.+++|+.|++++ +...+. ++..+..+++|+.
T Consensus 180 ~~n~-~-~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 180 HLSE-S-AFLLEIFADILSSVRYLELRD--TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp ECSB-S-TTHHHHHHHSTTTBSEEEEES--CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ccCc-c-cccchhhHhhcccccEEEccC--CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 2211 1 11111 123466666666665 322211 1111222334444
Q ss_pred EEeecCC----------------CCCCCceEeeccCCC---------------CCCccEEEEecCCCCCCCcccc-cCCC
Q 003154 687 LKLVNES----------------KMPRLSKIVLFENQF---------------PPSLTHLSFSNTDLIDDPMPTL-EKLP 734 (843)
Q Consensus 687 L~l~~~~----------------~~~~L~~L~l~~~~l---------------p~~L~~L~L~~~~l~~~~~~~l-~~l~ 734 (843)
|++.++. .+++++.|.+....+ .++|+.|++++|.+. ..|..+ +.++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 4443321 123444444322111 146788888888765 445444 5789
Q ss_pred CCcEEEeecccccCCcc--ccCCCCCCcccEEEecCcccccccc---cccccccccceEeeecCCCCCCCCccccCCCCC
Q 003154 735 YLQVLKLKQNSYSGRKL--ACGSDGFPKLKVLHLKSMIWLEEWT---MGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNF 809 (843)
Q Consensus 735 ~L~~L~L~~~~~~~~~~--~~~~~~f~~L~~L~L~~~~~l~~l~---~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L 809 (843)
+|+.|++++|.+.+..+ ......+++|++|++++|. ++.++ ..++.+++|+.|++++|. +..+|..+..+++|
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L 412 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKM 412 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccc
Confidence 99999999888765332 2234568899999999875 66554 236788999999999885 56788888888888
Q ss_pred cEEEecCCC
Q 003154 810 KKLELWWPQ 818 (843)
Q Consensus 810 ~~L~l~~~~ 818 (843)
+.|++++|.
T Consensus 413 ~~L~Ls~N~ 421 (549)
T 2z81_A 413 RFLNLSSTG 421 (549)
T ss_dssp CEEECTTSC
T ss_pred cEEECCCCC
Confidence 888888876
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.8e-22 Score=222.72 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=223.5
Q ss_pred ccc-ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhC
Q 003154 508 DRL-DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSN 585 (843)
Q Consensus 508 ~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~ 585 (843)
..+ .++++.|.+.++.. ..++..+|..+++|++|+|++|.+..+| ..++.+++|++|++++|.++.+|+..|++
T Consensus 40 ~~~~l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp SSGGGCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCCceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 344 79999999998876 3567788999999999999999998766 48999999999999999999998876699
Q ss_pred CccCcEEeCCCCcCcccchh-hhcccccccccccccccCCCC---CCCCCCccccccccccCCCCCCccccCCCCCCceE
Q 003154 586 LLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAHP---GKYCSSLENLNFISALHPRCCTPDILGRLPKLGSL 661 (843)
Q Consensus 586 L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~~---~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L 661 (843)
+++|++|++++|.+..+|.. +..+++|++|++++|.+.... +..+++|++|....+.... .. ++.+++|+.|
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~-~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VD-LSLIPSLFHA 191 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB---CC-GGGCTTCSEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc---cc-ccccccccee
Confidence 99999999999999999887 489999999999998886542 2255566666543332111 12 5566777777
Q ss_pred eeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEe
Q 003154 662 QICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKL 741 (843)
Q Consensus 662 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 741 (843)
++++ +... .+....+|+.|+++++. +..+. ...+ ++|+.|++++|.+.+ ++.++.+++|+.|++
T Consensus 192 ~l~~--n~l~-----~~~~~~~L~~L~l~~n~----l~~~~--~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 192 NVSY--NLLS-----TLAIPIAVEELDASHNS----INVVR--GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDL 255 (390)
T ss_dssp ECCS--SCCS-----EEECCSSCSEEECCSSC----CCEEE--CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred eccc--cccc-----ccCCCCcceEEECCCCe----eeecc--cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEEC
Confidence 7775 3221 22344567777776543 44432 2223 799999999999865 368899999999999
Q ss_pred ecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 742 KQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 742 ~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
++|.+.+. .+.....+++|++|++++|. +..++.....+|+|+.|++++|. +..+|..+..+++|+.|++.+|+
T Consensus 256 s~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 256 SYNELEKI-MYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSSCCCEE-ESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCcCCCc-ChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 99987753 34455679999999999986 77788777889999999999996 66889889999999999999998
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2.3e-21 Score=236.67 Aligned_cols=316 Identities=18% Similarity=0.148 Sum_probs=205.2
Q ss_pred cccceEEEEEeeCCCCCcc-cccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCC
Q 003154 488 SRKRVRRFCANVNLGELDS-FDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~-~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~ 563 (843)
.+.++++|.+. ++..... +..+ +++|+.|.+.++... ..+.+..|.++++|++|+|++|.+..+ |..++++.
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 46789999999 6555544 3444 899999999887542 345567889999999999999998855 88899999
Q ss_pred CccEEEccCCCCcc-cchh-HhhCCccCcEEeCCCCcCccc--chhhhcccccccccccccccCCCCCC---CC--CCcc
Q 003154 564 RLRYLKLNIPSLKS-LPSS-LLSNLLNLYTLDMPSSYIDHT--ADDIWKLNKLRHLNFGLITLPAHPGK---YC--SSLE 634 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~-lp~~-i~~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~l~~~~~~---~l--~~L~ 634 (843)
+|++|+|++|.+.. +|.. .++++++|++|+|++|.+..+ +..++++++|++|++++|.+...... .+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 99999999999985 4544 238999999999999988776 35689999999999999888764322 22 5666
Q ss_pred ccccccccCCCCCCccccCCCCC------CceEeeecCCcchhhhhhHh-------------------------------
Q 003154 635 NLNFISALHPRCCTPDILGRLPK------LGSLQICGDLNYYQSLLSKS------------------------------- 677 (843)
Q Consensus 635 ~L~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~------------------------------- 677 (843)
.|....+.. ....+..++.+++ |+.|++++ +......+..
T Consensus 178 ~L~L~~n~l-~~~~~~~~~~~~~~~~~~~L~~L~Ls~--n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 178 FFSLAANSL-YSRVSVDWGKCMNPFRNMVLEILDVSG--NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CCEECCSBS-CCCCCCCCCSSSCTTTTCCBSEEBCSS--CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred eEECCCCcc-ccccccchhhcCCccccCceeEEecCC--CcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 666433322 2222222444443 77777775 3221111111
Q ss_pred -----hcC--CCCCCeEEeecCC----------CCCCCceEeecc-----------CCCCCCccEEEEecCCCCCCCccc
Q 003154 678 -----LHG--LSCLESLKLVNES----------KMPRLSKIVLFE-----------NQFPPSLTHLSFSNTDLIDDPMPT 729 (843)
Q Consensus 678 -----l~~--l~~L~~L~l~~~~----------~~~~L~~L~l~~-----------~~lp~~L~~L~L~~~~l~~~~~~~ 729 (843)
+.. .++|+.|+++.|. .+++|+.|.+.. ..+ ++|++|+|++|.+.+..+..
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCS
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHH
Confidence 111 2456666666543 345555555522 233 56777777777766555666
Q ss_pred ccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCc--------
Q 003154 730 LEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPE-------- 801 (843)
Q Consensus 730 l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~-------- 801 (843)
++.+++|+.|++++|.+.... ......+++|++|++++|. +..++ .+|+|+.|.+++|.. ..+|.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N~l-~~l~~~~~~l~~L 406 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSGNKL-VTLPKINLTANLI 406 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEESCCC-CCCCCCCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCC-CCccc----CCCCcchhccCCCCc-cccccccccccee
Confidence 777777777777766654322 2234456777777777654 34332 255666666665542 23332
Q ss_pred --------------cccCCCCCcEEEecCCC
Q 003154 802 --------------HLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 802 --------------~l~~l~~L~~L~l~~~~ 818 (843)
.+.++++|+.|++++|.
T Consensus 407 ~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 407 HLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp ECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred ecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 13467888888888775
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.7e-21 Score=220.20 Aligned_cols=261 Identities=19% Similarity=0.113 Sum_probs=129.4
Q ss_pred hccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccc
Q 003154 536 CKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHL 615 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 615 (843)
+..+++|++|+|++|.+..+| ++.+++|++|++++|.++.+| + +++++|++|++++|.+..+| ++.+++|++|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 445555555555555555543 555555555555555555543 2 55555555555555555543 4555555555
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC--
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES-- 693 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-- 693 (843)
++++|.+.+..+..+++|++|....+... ..+ . ++.+++|+.|++++ +...+ ++ +..+++|+.|++++|.
T Consensus 133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~-~~~-~-~~~l~~L~~L~ls~--n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTEIDVSHNTQLTELDCHLNKKI-TKL-D-VTPQTQLTTLDCSF--NKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSCCCCTTCTTCCEEECTTCSCC-CCC-C-CTTCTTCCEEECCS--SCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCccceeccccCCcCCEEECCCCCcc-ccc-c-cccCCcCCEEECCC--Cccce-ec--cccCCCCCEEECcCCcCC
Confidence 55555555443334444444443222111 111 1 44555555555554 22222 22 4445555555555432
Q ss_pred -----CCCCCceEee--------ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCcc-------cc
Q 003154 694 -----KMPRLSKIVL--------FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKL-------AC 753 (843)
Q Consensus 694 -----~~~~L~~L~l--------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-------~~ 753 (843)
.+++|+.|.+ .+..+ ++|+.|++++|.+.+.. ++.+++|+.|++++|.+....+ ..
T Consensus 205 ~~~l~~l~~L~~L~Ls~N~l~~ip~~~l-~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 205 KLDLNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp CCCCTTCTTCSEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred eeccccCCCCCEEECcCCcccccCcccc-CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 1122222222 12334 56666666666665433 2334444444433332211100 01
Q ss_pred CCCCCCcccEEEecCccccccccc--------ccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 754 GSDGFPKLKVLHLKSMIWLEEWTM--------GNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 754 ~~~~f~~L~~L~L~~~~~l~~l~~--------~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
....+++|+.|++++|..+..++. .+..+|+|+.|++++|. ++.+| +.++++|+.|+++++.
T Consensus 281 ~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 124467777777777765555442 13455667777776665 33443 6778888888887765
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=235.18 Aligned_cols=133 Identities=15% Similarity=0.057 Sum_probs=111.7
Q ss_pred cccceEEEEEeeCCCCCcccc-cc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCC
Q 003154 488 SRKRVRRFCANVNLGELDSFD-RL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~ 563 (843)
.+..+++|.+. ++....... .+ +++|++|.+.++.. ..+.+..|.++++|++|+|++|.+..+| ..++++.
T Consensus 26 l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 46679999998 666554433 34 89999999998865 3455677899999999999999998665 6899999
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc--cchhhhcccccccccccccccCCC
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH--TADDIWKLNKLRHLNFGLITLPAH 625 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~l~~~ 625 (843)
+|++|++++|.++.+|+..++++++|++|++++|.+.. +|..++++++|++|++++|.+...
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 99999999999999887434999999999999998875 689999999999999998887653
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=7.6e-22 Score=229.68 Aligned_cols=318 Identities=16% Similarity=0.126 Sum_probs=220.8
Q ss_pred ccceEEEEEeeCCCCCccc-ccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC--CchhccCCC
Q 003154 489 RKRVRRFCANVNLGELDSF-DRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ--YPAGIENLS 563 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~--lp~~i~~L~ 563 (843)
..+.++|.+. ++.....+ ..+ +++|++|.+.++... ..++..|.++++|++|+|++|.+.. .|..+++++
T Consensus 49 l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDNHLS----SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSCCC----SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECC-CCCcCccChhhccccccCCEEECCCCccC----ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 4678999998 66555444 344 899999999988763 4566779999999999999999984 577899999
Q ss_pred CccEEEccCCC-CcccchhHhhCCccCcEEeCCCCcCcc-cchhhhcccccccccccccccCCCC---CCCCCCcccccc
Q 003154 564 RLRYLKLNIPS-LKSLPSSLLSNLLNLYTLDMPSSYIDH-TADDIWKLNKLRHLNFGLITLPAHP---GKYCSSLENLNF 638 (843)
Q Consensus 564 ~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~l~~~~---~~~l~~L~~L~~ 638 (843)
+|++|++++|. +..+|+..++++++|++|++++|.+.. .|..+..+++|++|+++.|.+.... ...+++|++|..
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 99999999998 678886545999999999999998876 5888999999999998887764321 114677877765
Q ss_pred ccccCCCCC---Cc---------------------------c------------------------------ccCCCCC-
Q 003154 639 ISALHPRCC---TP---------------------------D------------------------------ILGRLPK- 657 (843)
Q Consensus 639 ~~~~~~~~~---~~---------------------------~------------------------------~l~~l~~- 657 (843)
..+...... .+ . .+..+.+
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 443311100 00 0 0111122
Q ss_pred ----------------------------CceEeeecCCcchhhhhhHhh-cCCCCCCeEEeecCC-------------CC
Q 003154 658 ----------------------------LGSLQICGDLNYYQSLLSKSL-HGLSCLESLKLVNES-------------KM 695 (843)
Q Consensus 658 ----------------------------L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~-------------~~ 695 (843)
|+.|++++ +. ...+|..+ ..+++|+.|++++|. .+
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~--n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN--SK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES--SC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEecc--Cc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 22222221 11 11233333 356777777777653 34
Q ss_pred CCCceEeeccC-------------CCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCcc-----------
Q 003154 696 PRLSKIVLFEN-------------QFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKL----------- 751 (843)
Q Consensus 696 ~~L~~L~l~~~-------------~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----------- 751 (843)
++|+.|.++.+ .+ ++|+.|++++|.+. .+|..++.+++|++|++++|.+.....
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~L 438 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV 438 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEEC
T ss_pred ccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEEC
Confidence 56777776332 34 67888888888775 566677777777777777776542110
Q ss_pred -----ccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 752 -----ACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 752 -----~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
......+++|++|++++|. ++.+|. ...+++|+.|++++|......|..+..+++|+.|++++||
T Consensus 439 s~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 439 SNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 0011357889999999885 667775 4679999999999997555445568999999999999887
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=239.51 Aligned_cols=307 Identities=18% Similarity=0.174 Sum_probs=195.7
Q ss_pred CCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC-CCCC-chhccCCCCccEEEccCCCCccc
Q 003154 501 LGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF-LDQY-PAGIENLSRLRYLKLNIPSLKSL 578 (843)
Q Consensus 501 ~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-~~~l-p~~i~~L~~Lr~L~L~~~~i~~l 578 (843)
.....+|. ..+++++|.+.++... .+.+..|.++++|++|+|++|. +..+ |..+++|++|++|+|++|.+..+
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 33444565 6789999999988763 3455678999999999999995 4455 77899999999999999999988
Q ss_pred chhHhhCCccCcEEeCCCCcCcc-cchh--hhcccccccccccccccCCCCC----CCCCCccccccccccCCCCCCccc
Q 003154 579 PSSLLSNLLNLYTLDMPSSYIDH-TADD--IWKLNKLRHLNFGLITLPAHPG----KYCSSLENLNFISALHPRCCTPDI 651 (843)
Q Consensus 579 p~~i~~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~l~~~~~----~~l~~L~~L~~~~~~~~~~~~~~~ 651 (843)
++..|+++++|++|+|++|.+.. +|.. +.++++|++|++++|.+..... ..+++|++|....+. .....+..
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~ 167 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHE 167 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHH
Confidence 55545999999999999998876 5655 8999999999999999877543 267788888744432 22333333
Q ss_pred cCCC--CCCceEeeecCCcchhhhhhHhhcCCCC------CCeEEeecCC-------------CCCCCceEeec------
Q 003154 652 LGRL--PKLGSLQICGDLNYYQSLLSKSLHGLSC------LESLKLVNES-------------KMPRLSKIVLF------ 704 (843)
Q Consensus 652 l~~l--~~L~~L~l~~~~~~~~~~l~~~l~~l~~------L~~L~l~~~~-------------~~~~L~~L~l~------ 704 (843)
++.+ ++|+.|+++. +......+..+..+.+ |+.|++++|. ....+..+.+.
T Consensus 168 l~~l~~~~L~~L~L~~--n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAA--NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GHHHHHCSSCCCEECC--SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred cccccCCccceEECCC--CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 6666 8899999987 5555555555544444 8999998762 11223333221
Q ss_pred --------------cCCC-CCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCc
Q 003154 705 --------------ENQF-PPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSM 769 (843)
Q Consensus 705 --------------~~~l-p~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~ 769 (843)
+..+ +++|+.|++++|.+....+..++.+++|+.|+|++|.+.+. .+....++++|++|++++|
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTTTTCSSCCEEEEESC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHhcCCCCCCEEECCCC
Confidence 0000 13455555555555444445555555555555555554432 1222344555555555555
Q ss_pred cccccc-ccccccccccceEeeecCCCCCCCC-ccccCCCCCcEEEecCCC
Q 003154 770 IWLEEW-TMGNEAMPKLECLVVNPCAYLKRLP-EHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 770 ~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 818 (843)
. +..+ +..+..+++|+.|++++|.. ..++ ..+.++++|+.|++++|.
T Consensus 325 ~-l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 325 L-LGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp C-CSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCC
T ss_pred C-CCccCHHHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCC
Confidence 4 2222 33445555555555555542 2232 234455555555555544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.3e-22 Score=232.29 Aligned_cols=270 Identities=15% Similarity=0.138 Sum_probs=223.1
Q ss_pred cCCcccEEEcCCCCCCCCchh-ccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccc
Q 003154 538 MFKFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHL 615 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 615 (843)
.++++++|+++++.+..+|.. ++.+++|++|+|++|.++.+|+..|+++++|++|+|++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 367899999999999988876 57899999999999999998875559999999999999999988654 7999999999
Q ss_pred cccccccCCCC---CCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecC
Q 003154 616 NFGLITLPAHP---GKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 616 ~L~~~~l~~~~---~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 692 (843)
++++|.+.... +..+++|++|....+. .....+..++.+++|+.|++++ |..... .+..+++|+.|++++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~--N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSS--NRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTT--SCCSBC---CGGGCTTCSEEECCSS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcC--CCCCCc---ChhhhhhhhhhhcccC
Confidence 99999888653 2367788888754443 3344455589999999999997 444332 2556889999999986
Q ss_pred C-----CCCCCceEeeccCCC-------CCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCc
Q 003154 693 S-----KMPRLSKIVLFENQF-------PPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPK 760 (843)
Q Consensus 693 ~-----~~~~L~~L~l~~~~l-------p~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~ 760 (843)
. .+++|+.|.+..+.+ +++|+.|++++|.+++ ++.++.+++|+.|+|++|.+.+. .+.....+++
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 279 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQR 279 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSS
T ss_pred ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-CHHHhcCccC
Confidence 5 567889888854433 3789999999999875 57899999999999999988764 3445567999
Q ss_pred ccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 761 LKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 761 L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
|+.|+|++|. +..++...+.+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 280 L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 280 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 9999999976 77788878889999999999997 55799889999999999999988
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.3e-21 Score=233.86 Aligned_cols=309 Identities=18% Similarity=0.144 Sum_probs=229.6
Q ss_pred CCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCcccch
Q 003154 502 GELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSLPS 580 (843)
Q Consensus 502 ~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~ 580 (843)
....+|..+.+++++|.+.++... .++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.++.+|+
T Consensus 15 ~L~~ip~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 15 KLTQVPDDLPTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCSCSCTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CccccccccCCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 334455555789999999988763 35667799999999999999998855 6778999999999999999999998
Q ss_pred hHhhCCccCcEEeCCCCcCcccc-hhhhcccccccccccccccCCCCCC---CCCCccccccccccCCCCCCcccc--CC
Q 003154 581 SLLSNLLNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLITLPAHPGK---YCSSLENLNFISALHPRCCTPDIL--GR 654 (843)
Q Consensus 581 ~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~---~l~~L~~L~~~~~~~~~~~~~~~l--~~ 654 (843)
..|+++++|++|++++|.+..+| ..++++++|++|++++|.+...... .+++|++|....+. .....+..+ ..
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccc
Confidence 65599999999999999999886 5699999999999999988765333 67777777644432 222222223 35
Q ss_pred CCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC-------------CCCCCceEeeccCC-----------CC-
Q 003154 655 LPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES-------------KMPRLSKIVLFENQ-----------FP- 709 (843)
Q Consensus 655 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~l~~~~-----------lp- 709 (843)
+++|+.|++++ +...+..+..+..+.+|+.|.+..+. ..++|+.|.+..+. ++
T Consensus 170 ~~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 170 NSSLKKLELSS--NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp TCEESEEECTT--CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred cccccEEECCC--CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence 68899999987 55555556667777777777776543 23567777663332 21
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccc-----cccc----ccc
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLE-----EWTM----GNE 780 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~-----~l~~----~~~ 780 (843)
++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+. .+....++++|++|+++++..-. .+|. .++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 3499999999988777777888999999999998877653 33445678889999888653211 2221 456
Q ss_pred cccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 781 AMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 781 ~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 78888888888887655555667888888888888764
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=223.40 Aligned_cols=294 Identities=18% Similarity=0.114 Sum_probs=231.9
Q ss_pred cccceEEEEEeeCCCCCccc-ccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCC
Q 003154 488 SRKRVRRFCANVNLGELDSF-DRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~ 563 (843)
.+..++.|.+. ++...... ..+ +++|++|.+.++... .+.+..|.++++|++|+|++|.+..+|.. +++++
T Consensus 30 ~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 46688999999 66665443 344 899999999888653 35567789999999999999999988865 68999
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCCC---CCCCCCccccccc
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAHP---GKYCSSLENLNFI 639 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~~---~~~l~~L~~L~~~ 639 (843)
+|++|++++|.+..+++..|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.... +..+++|+.|...
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 999999999999988766569999999999999999887 557999999999999999887643 2367788888755
Q ss_pred cccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEe
Q 003154 640 SALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFS 718 (843)
Q Consensus 640 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~ 718 (843)
.+. .....+..+..+++|+.|++++ +.....++.......+|+.|++++|. +..+.. .+..+ ++|+.|+|+
T Consensus 185 ~n~-i~~~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l-~~L~~L~Ls 256 (477)
T 2id5_A 185 HLN-INAIRDYSFKRLYRLKVLEISH--WPYLDTMTPNCLYGLNLTSLSITHCN----LTAVPYLAVRHL-VYLRFLNLS 256 (477)
T ss_dssp SCC-CCEECTTCSCSCTTCCEEEEEC--CTTCCEECTTTTTTCCCSEEEEESSC----CCSCCHHHHTTC-TTCCEEECC
T ss_pred CCc-CcEeChhhcccCcccceeeCCC--CccccccCcccccCccccEEECcCCc----ccccCHHHhcCc-cccCeeECC
Confidence 443 2223333488999999999997 55556666666666799999999764 443332 34566 899999999
Q ss_pred cCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccc-ccccccccceEeeecCCCC
Q 003154 719 NTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTM-GNEAMPKLECLVVNPCAYL 796 (843)
Q Consensus 719 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~l 796 (843)
+|.+.+..+..+..+++|+.|+|++|.+.+. .+.....+++|+.|++++|. ++.++. .+..+++|+.|++++|+..
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEE-CTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCcCCccChhhccccccCCEEECCCCccceE-CHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence 9998877777889999999999998887753 23445678999999999985 666654 3578899999999999853
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.7e-22 Score=217.13 Aligned_cols=248 Identities=19% Similarity=0.191 Sum_probs=139.8
Q ss_pred cceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCC-CCCC-CCchhccCCCCccEEEccCCCCc-ccchhHhhCCcc
Q 003154 512 SYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGS-LFLD-QYPAGIENLSRLRYLKLNIPSLK-SLPSSLLSNLLN 588 (843)
Q Consensus 512 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~-~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 588 (843)
.+++.|.+.++.... ....+..+.++++|++|+|++ +.+. .+|..++++++|++|++++|.++ .+|..+ +++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 356666666554420 002234556666666666663 4443 55666666666666666666665 455554 66666
Q ss_pred CcEEeCCCCcCc-ccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCC-CCceEeeecC
Q 003154 589 LYTLDMPSSYID-HTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLP-KLGSLQICGD 666 (843)
Q Consensus 589 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 666 (843)
|++|++++|.+. .+|..+..+++|++|++++|.+.+ .++..++.++ +|+.|++++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----------------------~~p~~l~~l~~~L~~L~L~~- 183 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG----------------------AIPDSYGSFSKLFTSMTISR- 183 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE----------------------ECCGGGGCCCTTCCEEECCS-
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC----------------------cCCHHHhhhhhcCcEEECcC-
Confidence 666666666555 456666666666666655554431 1122245554 566666655
Q ss_pred CcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccc
Q 003154 667 LNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSY 746 (843)
Q Consensus 667 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 746 (843)
|...+..|..+..++ |+.|++++|.+.+..+..++.+++|+.|+|++|.+
T Consensus 184 -N~l~~~~~~~~~~l~-----------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 184 -NRLTGKIPPTFANLN-----------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp -SEEEEECCGGGGGCC-----------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred -CeeeccCChHHhCCc-----------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 444334444443332 55555555555555556666666666666666666
Q ss_pred cCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 747 SGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 747 ~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.+.... ...+++|++|++++|.....+|..+..+++|+.|++++|+....+|.. ..+++|+.+++.++|
T Consensus 234 ~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 543221 344666666666666533355555666666667766666655455554 566666666666665
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=4.4e-21 Score=221.66 Aligned_cols=316 Identities=16% Similarity=0.134 Sum_probs=205.6
Q ss_pred EEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEcc
Q 003154 493 RRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLN 571 (843)
Q Consensus 493 r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~ 571 (843)
+++.+. ++....++..+.++++.|.+.++... ..++..|.++++|++|+|++|.+..+ |..++++++|++|+++
T Consensus 3 ~~l~ls-~n~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRS-KNGLIHVPKDLSQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECT-TSCCSSCCCSCCTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecC-CCCcccccccccccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 456666 55555566656789999999998863 45667899999999999999999866 7799999999999999
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCcc--cchhhhcccccccccccccccCCCCCCCCCCc--cccccccccCC-CC
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDH--TADDIWKLNKLRHLNFGLITLPAHPGKYCSSL--ENLNFISALHP-RC 646 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L--~~L~~~~~~~~-~~ 646 (843)
+|.++.+|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.+....+..+++| ++|....+... ..
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc
Confidence 9999999985 89999999999999976 57899999999999999999877555566777 77764443210 11
Q ss_pred CCcccc--------------------------CCCCCCceEeeecCC---------------------------------
Q 003154 647 CTPDIL--------------------------GRLPKLGSLQICGDL--------------------------------- 667 (843)
Q Consensus 647 ~~~~~l--------------------------~~l~~L~~L~l~~~~--------------------------------- 667 (843)
..+..+ ..+++|+.|++++..
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 111112 234455555554310
Q ss_pred ----------------------cchhhhhhHhh-----cCCCCCCeEEeecCC---C---------CCCCceEeecc---
Q 003154 668 ----------------------NYYQSLLSKSL-----HGLSCLESLKLVNES---K---------MPRLSKIVLFE--- 705 (843)
Q Consensus 668 ----------------------~~~~~~l~~~l-----~~l~~L~~L~l~~~~---~---------~~~L~~L~l~~--- 705 (843)
+...+.+|..+ ..+++|+.++++.+. + ..+|+.|.+..
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence 11111222222 222222222222211 0 02244444311
Q ss_pred ------CCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCC-ccccCCCCCCcccEEEecCcccccccccc
Q 003154 706 ------NQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGR-KLACGSDGFPKLKVLHLKSMIWLEEWTMG 778 (843)
Q Consensus 706 ------~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~f~~L~~L~L~~~~~l~~l~~~ 778 (843)
..+ ++|++|++++|.+.+..|..++.+++|+.|++++|.+.+. .++.....+++|++|++++|.....++..
T Consensus 315 ~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 315 VHMLCPSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred ccccchhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 234 6777888888877766677777788888888877776541 12223345666777776665522224322
Q ss_pred -cccc----------------------cccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 779 -NEAM----------------------PKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 779 -~~~l----------------------p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
+..+ ++|+.|++++|. +..+|..+..+++|++|++++|.
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 2222 466666666664 44677777788888888888876
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=4.2e-21 Score=223.91 Aligned_cols=291 Identities=18% Similarity=0.183 Sum_probs=195.7
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 589 (843)
+...+++.+.++.... ++...+ ++|++|+|++|.+..+| ..++++++|++|++++|.++.+++..|+++++|
T Consensus 30 ~~~~~~l~ls~~~L~~----ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 30 NELESMVDYSNRNLTH----VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ---CCEEECTTSCCCS----CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cCCCcEEEcCCCCCcc----CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 4455788887776542 333322 79999999999999776 689999999999999999999876655999999
Q ss_pred cEEeCCCCcCcccchhhhcccccccccccccccCCCCCC----CCCCccccccccccCCCCCCccccCCCCCC--ceEee
Q 003154 590 YTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGK----YCSSLENLNFISALHPRCCTPDILGRLPKL--GSLQI 663 (843)
Q Consensus 590 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~----~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L--~~L~l 663 (843)
++|++++|.+..+|.. .+++|++|++++|.+.....| .+++|++|....+.-.... +..+++| +.|++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEe
Confidence 9999999999999987 899999999999998875443 6777887775443322222 4444555 88888
Q ss_pred ecCCcch--hhhhhH------------------------------------------------------hhcCC------
Q 003154 664 CGDLNYY--QSLLSK------------------------------------------------------SLHGL------ 681 (843)
Q Consensus 664 ~~~~~~~--~~~l~~------------------------------------------------------~l~~l------ 681 (843)
++ +.. ....+. .+..+
T Consensus 177 ~~--n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 177 DL--VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EE--SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred ec--ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 76 222 111111 11111
Q ss_pred ---------------------CCCCeEEeecCC-------CC-----CC-----------------------------Cc
Q 003154 682 ---------------------SCLESLKLVNES-------KM-----PR-----------------------------LS 699 (843)
Q Consensus 682 ---------------------~~L~~L~l~~~~-------~~-----~~-----------------------------L~ 699 (843)
.+|++|+++++. .. ++ |+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 245555554421 00 22 33
Q ss_pred eEeecc---------CCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCC-ccccCCCCCCcccEEEecCc
Q 003154 700 KIVLFE---------NQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGR-KLACGSDGFPKLKVLHLKSM 769 (843)
Q Consensus 700 ~L~l~~---------~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~f~~L~~L~L~~~ 769 (843)
.|.+.. ..+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+. ..+.....+++|++|++++|
T Consensus 335 ~L~l~~n~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEEESSCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEEccCCCcccccCccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 333211 334 7888888888888777778888888888888888877652 22334456777777777776
Q ss_pred ccccccccc-cc---------------------cc-cccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 770 IWLEEWTMG-NE---------------------AM-PKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 770 ~~l~~l~~~-~~---------------------~l-p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.....++.. +. .+ ++|+.|++++|. ++.+|..+..+++|+.|++++|.
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 532223321 11 22 577777777774 56788777788888888888876
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=5.1e-21 Score=216.27 Aligned_cols=260 Identities=22% Similarity=0.133 Sum_probs=202.8
Q ss_pred HhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccc
Q 003154 535 ICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRH 614 (843)
Q Consensus 535 ~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 614 (843)
.+.++++|++|++++|.+..+| .++.+++|++|++++|.++.+| + +++++|++|++++|.+..+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c-ccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 4677899999999999999887 7999999999999999999987 5 99999999999999999986 889999999
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC-
Q 003154 615 LNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES- 693 (843)
Q Consensus 615 L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~- 693 (843)
|++++|.+.+..+..+++|++|....+.-.. + . ++.+++|+.|++++ |...+.+ .+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~--l-~-l~~l~~L~~L~l~~--n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTE--I-D-VSHNTQLTELDCHL--NKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTSCCSC--C-C-CTTCTTCCEEECTT--CSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCeecCCCCCcCCEEECCCCccce--e-c-cccCCcCCEEECCC--CCccccc--ccccCCcCCEEECCCCcc
Confidence 9999999988666678888888755443222 2 3 88999999999997 4333333 46788999999999864
Q ss_pred ------CCCCCceEeecc--------CCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCC
Q 003154 694 ------KMPRLSKIVLFE--------NQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFP 759 (843)
Q Consensus 694 ------~~~~L~~L~l~~--------~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~ 759 (843)
.+++|+.|.+.. ..+ ++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+.. ...|+
T Consensus 183 ~~l~l~~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~ 254 (457)
T 3bz5_A 183 TELDVSQNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLS 254 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCT
T ss_pred ceeccccCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCC
Confidence 566788887743 344 788999999998876 33 788899999999988887643 23466
Q ss_pred cccEEEe----------cCcccccccccccccccccceEeeecCCCCCCCCc--------cccCCCCCcEEEecCCC
Q 003154 760 KLKVLHL----------KSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPE--------HLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 760 ~L~~L~L----------~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~--------~l~~l~~L~~L~l~~~~ 818 (843)
+|+.|.+ ++|..+..+| .+.+++|+.|++++|+.++.+|. .+.++++|++|++++|.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 6655544 4444444444 46789999999999987776654 24566777888777765
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.1e-20 Score=204.80 Aligned_cols=246 Identities=15% Similarity=0.204 Sum_probs=144.0
Q ss_pred CcccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFG 618 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 618 (843)
+.|++|+|++|.+..+|. .++++++|++|++++|.++.+++..|+++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 345555555555544433 34555555555555555554422222555555555555555555544433 445555544
Q ss_pred ccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCC
Q 003154 619 LITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRL 698 (843)
Q Consensus 619 ~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 698 (843)
+|.+.. ..+..+..+++|+.|++++..-...+..+..+..+++|+.|+++++. +
T Consensus 130 ~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~----l 183 (330)
T 1xku_A 130 ENEITK----------------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----I 183 (330)
T ss_dssp SSCCCB----------------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC----C
T ss_pred CCcccc----------------------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc----c
Confidence 443322 22333677788888888762211223445667778888888887654 2
Q ss_pred ceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccc
Q 003154 699 SKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMG 778 (843)
Q Consensus 699 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~ 778 (843)
..+. .... ++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+.. ......+++|++|++++|. +..+|..
T Consensus 184 ~~l~--~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~ 258 (330)
T 1xku_A 184 TTIP--QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNK-LVKVPGG 258 (330)
T ss_dssp CSCC--SSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSC-CSSCCTT
T ss_pred ccCC--cccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCc-CccCChh
Confidence 2221 1122 67888888888776666677778888888888877765422 2233457788888888775 6677777
Q ss_pred cccccccceEeeecCCCCCCCCc-ccc------CCCCCcEEEecCCCH
Q 003154 779 NEAMPKLECLVVNPCAYLKRLPE-HLW------CMKNFKKLELWWPQP 819 (843)
Q Consensus 779 ~~~lp~L~~L~l~~c~~l~~lp~-~l~------~l~~L~~L~l~~~~~ 819 (843)
+..+++|+.|++++|+ ++.+|. .+. ..++|+.|++.++|-
T Consensus 259 l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 259 LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 7778888888888776 444443 221 246777888888773
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=8.5e-21 Score=205.79 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=52.2
Q ss_pred CcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFG 618 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 618 (843)
+.|++|+|++|.+..++ ..++++++|++|++++|.++.+++..|+++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 46666777766666543 356666677777776666666644333666677777776666666665554 566666666
Q ss_pred ccccCC
Q 003154 619 LITLPA 624 (843)
Q Consensus 619 ~~~l~~ 624 (843)
+|.+..
T Consensus 132 ~n~i~~ 137 (332)
T 2ft3_A 132 DNRIRK 137 (332)
T ss_dssp SSCCCC
T ss_pred CCccCc
Confidence 665543
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.7e-20 Score=222.03 Aligned_cols=132 Identities=15% Similarity=0.058 Sum_probs=110.5
Q ss_pred cccceEEEEEeeCCCCCcccc-cc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCch-hccCCC
Q 003154 488 SRKRVRRFCANVNLGELDSFD-RL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPA-GIENLS 563 (843)
Q Consensus 488 ~~~~~r~Lsl~~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~-~i~~L~ 563 (843)
.|..+++|.+. ++....++. .+ +++|++|.+.++.. ..+++..|.++++|++|+|++|.+..+|. .+.+|.
T Consensus 50 lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 46789999998 666665554 34 88999999988876 34666789999999999999999998875 578999
Q ss_pred CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc--cchhhhcccccccccccccccCC
Q 003154 564 RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH--TADDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 564 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~l~~ 624 (843)
+|++|++++|.++.+|+..|+++++|++|++++|.+.. +|..+..+++|++|++++|.+..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 99999999999999988756999999999999998865 47788999999999998887643
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.2e-20 Score=202.57 Aligned_cols=286 Identities=17% Similarity=0.174 Sum_probs=204.0
Q ss_pred ceEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEE
Q 003154 491 RVRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLK 569 (843)
Q Consensus 491 ~~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~ 569 (843)
..+.+.+. +.....++..+.++++.|.+.++... .+++..|.++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 34 ~l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECC-SSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECC-CCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 35566666 55555566656789999999888763 45556789999999999999999865 78899999999999
Q ss_pred ccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccccCCCCCCCCCCccccccccccCCCCCC
Q 003154 570 LNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCT 648 (843)
Q Consensus 570 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~ 648 (843)
+++|.++.+|..+ . ++|++|++++|.+..+|.. +..+++|++|++++|.+.... ..
T Consensus 109 L~~n~l~~l~~~~-~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------~~ 165 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG--------------------FE 165 (332)
T ss_dssp CCSSCCCSCCSSC-C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------------------SC
T ss_pred CCCCcCCccCccc-c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------------------CC
Confidence 9999999999977 3 8999999999999999764 889999999998888764310 01
Q ss_pred ccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCc
Q 003154 649 PDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPM 727 (843)
Q Consensus 649 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~ 727 (843)
+..+..+ +|+.|++++ +... .+|..+. ++|+.|++++|. +..+.. .+..+ ++|+.|++++|.+.+..+
T Consensus 166 ~~~~~~l-~L~~L~l~~--n~l~-~l~~~~~--~~L~~L~l~~n~----i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISE--AKLT-GIPKDLP--ETLNELHLDHNK----IQAIELEDLLRY-SKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp TTSSCSC-CCSCCBCCS--SBCS-SCCSSSC--SSCSCCBCCSSC----CCCCCTTSSTTC-TTCSCCBCCSSCCCCCCT
T ss_pred cccccCC-ccCEEECcC--CCCC-ccCcccc--CCCCEEECCCCc----CCccCHHHhcCC-CCCCEEECCCCcCCcCCh
Confidence 1114444 666666665 3222 2333332 577777776543 222221 34455 788888888888877666
Q ss_pred ccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccc-cc------cccccceEeeecCCCC--CC
Q 003154 728 PTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMG-NE------AMPKLECLVVNPCAYL--KR 798 (843)
Q Consensus 728 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~-~~------~lp~L~~L~l~~c~~l--~~ 798 (843)
..++.+++|+.|+|++|.+. .++.....+++|++|++++|. ++.++.. +. .+++|+.|++.+|+.. ..
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred hHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccccc
Confidence 67888888888888888776 334445668888888888875 5555332 11 2578899999999865 34
Q ss_pred CCccccCCCCCcEEEecCCC
Q 003154 799 LPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 799 lp~~l~~l~~L~~L~l~~~~ 818 (843)
.|..+..+++|+.|++.+|.
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 56678889999999998875
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.6e-21 Score=207.77 Aligned_cols=247 Identities=17% Similarity=0.154 Sum_probs=171.0
Q ss_pred cceEEEEEeeCCCCC---cccccc--ccceeEEEeec-CCCCCCCCcchHHHhccCCcccEEEcCCCCCC-CCchhccCC
Q 003154 490 KRVRRFCANVNLGEL---DSFDRL--DSYLHSFLYLS-PESDHLNPRDSMKICKMFKFLRVLDLGSLFLD-QYPAGIENL 562 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~---~~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~-~lp~~i~~L 562 (843)
.+++++.+. +.... ..+..+ +++|++|.+.+ +... ...+..|.++++|++|+|++|.+. .+|..++++
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECC-CCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 679999999 55554 356666 89999999985 5442 123456889999999999999998 899999999
Q ss_pred CCccEEEccCCCCc-ccchhHhhCCccCcEEeCCCCcCc-ccchhhhccc-ccccccccccccCCCCCCCCCCccccccc
Q 003154 563 SRLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPSSYID-HTADDIWKLN-KLRHLNFGLITLPAHPGKYCSSLENLNFI 639 (843)
Q Consensus 563 ~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~L~~~~l~~~~~~~l~~L~~L~~~ 639 (843)
++|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..+..++ +|++|++++|.+.+.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-------------- 189 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-------------- 189 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--------------
T ss_pred CCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--------------
Confidence 99999999999999 677777 99999999999999997 7899999998 999999888876431
Q ss_pred cccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEec
Q 003154 640 SALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSN 719 (843)
Q Consensus 640 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~ 719 (843)
++..+..++ |+.|++++ |...+..+..+..+++|+.|++++|
T Consensus 190 --------~~~~~~~l~-L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N--------------------------- 231 (313)
T 1ogq_A 190 --------IPPTFANLN-LAFVDLSR--NMLEGDASVLFGSDKNTQKIHLAKN--------------------------- 231 (313)
T ss_dssp --------CCGGGGGCC-CSEEECCS--SEEEECCGGGCCTTSCCSEEECCSS---------------------------
T ss_pred --------CChHHhCCc-ccEEECcC--CcccCcCCHHHhcCCCCCEEECCCC---------------------------
Confidence 223366666 99999998 6666666677777766666666643
Q ss_pred CCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCC
Q 003154 720 TDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKR 798 (843)
Q Consensus 720 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~ 798 (843)
.+.+. ++.+..+++|++|+|++|.+.+. ++.....+++|++|++++|.....+|.. +.+++|+.|++.+|+.+..
T Consensus 232 -~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 232 -SLAFD-LGKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -EECCB-GGGCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred -ceeee-cCcccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 22222 12234444555555554444332 1222333455555555554422233332 5566666666666665443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=7.7e-20 Score=198.08 Aligned_cols=286 Identities=17% Similarity=0.153 Sum_probs=209.9
Q ss_pred ceEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEE
Q 003154 491 RVRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLK 569 (843)
Q Consensus 491 ~~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~ 569 (843)
..+.+.+. +.....++..+.++++.|.+.++... .++...|.++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 32 ~l~~l~~~-~~~l~~lp~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCS-DLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECT-TSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEec-CCCccccCccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 34555555 44444456555789999999888763 35556789999999999999999866 78899999999999
Q ss_pred ccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCC
Q 003154 570 LNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCT 648 (843)
Q Consensus 570 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~ 648 (843)
+++|.++.+|..+ . ++|++|++++|.+..++. .+..+++|++|++++|.+... ...
T Consensus 107 Ls~n~l~~l~~~~-~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~ 163 (330)
T 1xku_A 107 LSKNQLKELPEKM-P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------------GIE 163 (330)
T ss_dssp CCSSCCSBCCSSC-C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--------------------GBC
T ss_pred CCCCcCCccChhh-c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc--------------------CcC
Confidence 9999999999876 3 899999999999988865 588999999999887776421 011
Q ss_pred ccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCc
Q 003154 649 PDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPM 727 (843)
Q Consensus 649 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~ 727 (843)
+..+..+++|+.|++++ +... .+|..+ .++|+.|++++|. +..+.. ++..+ ++|+.|++++|.+.+..+
T Consensus 164 ~~~~~~l~~L~~L~l~~--n~l~-~l~~~~--~~~L~~L~l~~n~----l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIAD--TNIT-TIPQGL--PPSLTELHLDGNK----ITKVDAASLKGL-NNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp TTGGGGCTTCCEEECCS--SCCC-SCCSSC--CTTCSEEECTTSC----CCEECTGGGTTC-TTCCEEECCSSCCCEECT
T ss_pred hhhccCCCCcCEEECCC--Cccc-cCCccc--cccCCEEECCCCc----CCccCHHHhcCC-CCCCEEECCCCcCceeCh
Confidence 22367778888888876 3322 234333 2688888887654 444321 45566 788899999888877666
Q ss_pred ccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccccc-------ccccccceEeeecCCCCC--C
Q 003154 728 PTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGN-------EAMPKLECLVVNPCAYLK--R 798 (843)
Q Consensus 728 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~-------~~lp~L~~L~l~~c~~l~--~ 798 (843)
..++.+++|+.|+|++|.+. .++.....+++|++|++++|. ++.++... ...+.|+.|++.+|+... .
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred hhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccccccc
Confidence 67888899999999988776 344455678889999998876 56554321 135788999999998542 3
Q ss_pred CCccccCCCCCcEEEecCC
Q 003154 799 LPEHLWCMKNFKKLELWWP 817 (843)
Q Consensus 799 lp~~l~~l~~L~~L~l~~~ 817 (843)
.|..+..+++|+.+++++|
T Consensus 311 ~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGGGGTTCCCGGGEEC---
T ss_pred CccccccccceeEEEeccc
Confidence 4567888999999999876
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=3.7e-20 Score=219.24 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=84.9
Q ss_pred CCccEEEEecCCCCC-CCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc-ccccccccccce
Q 003154 710 PSLTHLSFSNTDLID-DPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW-TMGNEAMPKLEC 787 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~ 787 (843)
++|+.|++++|.... ..|..++.+++|+.|+|++|.+.+. .+..+.++++|++|+|++|. +..+ +..+..+++|+.
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-ChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCE
Confidence 678888888886433 3566788999999999998887653 34456779999999999986 6666 445678999999
Q ss_pred EeeecCCCCCCCCccccCC-CCCcEEEecCCC
Q 003154 788 LVVNPCAYLKRLPEHLWCM-KNFKKLELWWPQ 818 (843)
Q Consensus 788 L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~~~ 818 (843)
|++++|......|..+.++ ++|+.|++++||
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999998666667778888 689999998866
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.9e-19 Score=203.25 Aligned_cols=290 Identities=22% Similarity=0.222 Sum_probs=204.2
Q ss_pred ccceEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEE
Q 003154 489 RKRVRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYL 568 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L 568 (843)
+.+++++.+. ++....++. ..++|+.|.+.++..... + ...++|++|++++|.+..+| .++++++|++|
T Consensus 90 ~~~L~~L~l~-~n~l~~lp~-~~~~L~~L~l~~n~l~~l----~----~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVAS-CNSLTELPE-LPQSLKSLLVDNNNLKAL----S----DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECC-SSCCSSCCC-CCTTCCEEECCSSCCSCC----C----SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred cCCCCEEEcc-CCcCCcccc-ccCCCcEEECCCCccCcc----c----CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 5678888888 555543432 358899999988765421 1 11268999999999999988 69999999999
Q ss_pred EccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCC
Q 003154 569 KLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCT 648 (843)
Q Consensus 569 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~ 648 (843)
++++|.++.+|..+ .+|++|++++|.+..+| .++.+++|++|++++|.+.+. ....++|++|....+. .. .+
T Consensus 159 ~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l-~~~~~~L~~L~l~~n~-l~-~l 230 (454)
T 1jl5_A 159 DVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKL-PDLPLSLESIVAGNNI-LE-EL 230 (454)
T ss_dssp ECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC-CCCCTTCCEEECCSSC-CS-SC
T ss_pred ECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcC-CCCcCcccEEECcCCc-CC-cc
Confidence 99999999988643 58999999999999888 689999999999999888752 1134578888755443 22 55
Q ss_pred ccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC------CCCCCceEeeccC------CCCCCccEEE
Q 003154 649 PDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES------KMPRLSKIVLFEN------QFPPSLTHLS 716 (843)
Q Consensus 649 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l~~~------~lp~~L~~L~ 716 (843)
+. ++.+++|+.|++++ |...+ +|. .+++|+.|++++|. .+++|+.|.+..+ .+|++|+.|+
T Consensus 231 p~-~~~l~~L~~L~l~~--N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADN--NLLKT-LPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp CC-CTTCTTCCEEECCS--SCCSS-CCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred cc-cCCCCCCCEEECCC--CcCCc-ccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 65 88999999999987 43332 332 24788999988764 3457777777443 3346788888
Q ss_pred EecCCCCCCCcccccCC-CCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCC
Q 003154 717 FSNTDLIDDPMPTLEKL-PYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAY 795 (843)
Q Consensus 717 L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~ 795 (843)
+++|.+.+ +..+ ++|+.|++++|.+.+ ++ ..+++|++|++++|. ++.+|. .+++|+.|++++|+.
T Consensus 304 l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 304 ASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC
T ss_pred CcCCcCCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCC
Confidence 88887653 2234 488999998888765 22 236889999998875 666765 578899999998886
Q ss_pred CC--CCCccccCC-------------CCCcEEEecCCC
Q 003154 796 LK--RLPEHLWCM-------------KNFKKLELWWPQ 818 (843)
Q Consensus 796 l~--~lp~~l~~l-------------~~L~~L~l~~~~ 818 (843)
.. .+|..+..+ ++|+.|++++|+
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp SSCCCCCTTCCEEECCC---------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 65 677777766 788999988876
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.1e-20 Score=199.72 Aligned_cols=223 Identities=18% Similarity=0.217 Sum_probs=174.1
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
.++++.|.+.++... .++ ..+.++++|++|+|++|.+..+|..++++++|++|++++|.++.+|..+ +++++|+
T Consensus 80 ~~~l~~L~L~~n~l~----~lp-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP----QFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS----SCC-SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCC
T ss_pred ccceeEEEccCCCch----hcC-hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCC
Confidence 467778888776653 233 3355699999999999999999999999999999999999999999998 9999999
Q ss_pred EEeCCCC-cCcccchhhhc---------ccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCce
Q 003154 591 TLDMPSS-YIDHTADDIWK---------LNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGS 660 (843)
Q Consensus 591 ~L~L~~~-~l~~lp~~i~~---------L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 660 (843)
+|++++| .+..+|..+.. +++|++|++++|.+.. ++..++.+++|+.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----------------------LPASIANLQNLKS 210 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----------------------CCGGGGGCTTCCE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-----------------------chHhhcCCCCCCE
Confidence 9999998 56778887765 8999999988877642 2333778889999
Q ss_pred EeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEE
Q 003154 661 LQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLK 740 (843)
Q Consensus 661 L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 740 (843)
|++++ |... .++..+.. + ++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus 211 L~L~~--N~l~-~l~~~l~~---------------------------l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 211 LKIRN--SPLS-ALGPAIHH---------------------------L-PKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EEEES--SCCC-CCCGGGGG---------------------------C-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred EEccC--CCCC-cCchhhcc---------------------------C-CCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 99987 4332 23333333 3 5666666667766677777888888999999
Q ss_pred eecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCC
Q 003154 741 LKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCA 794 (843)
Q Consensus 741 L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~ 794 (843)
|++|.+.+.. +.....+++|++|++++|+.+..+|..++.+++|+.+.+..+.
T Consensus 260 L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 260 LKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9887776543 3345668899999999988888888888899999988887553
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=201.42 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=137.9
Q ss_pred cccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFG 618 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~ 618 (843)
+|++|++++|.+..+|. .+.++++|++|++++|.++.+++..|+++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666555443 455666666666666666655443335666666666666666555544 5556666666655
Q ss_pred ccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcc-hhhhhhHhhcCCCCCCeEEeecCCCCCC
Q 003154 619 LITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNY-YQSLLSKSLHGLSCLESLKLVNESKMPR 697 (843)
Q Consensus 619 ~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 697 (843)
+|.+.... ....+..+++|+.|++++ +. .....+..+..+++|+.|++++|.
T Consensus 133 ~n~l~~l~---------------------~~~~~~~l~~L~~L~l~~--n~~~~~~~~~~~~~l~~L~~L~l~~n~---- 185 (353)
T 2z80_A 133 GNPYKTLG---------------------ETSLFSHLTKLQILRVGN--MDTFTKIQRKDFAGLTFLEELEIDASD---- 185 (353)
T ss_dssp TCCCSSSC---------------------SSCSCTTCTTCCEEEEEE--SSSCCEECTTTTTTCCEEEEEEEEETT----
T ss_pred CCCCcccC---------------------chhhhccCCCCcEEECCC--CccccccCHHHccCCCCCCEEECCCCC----
Confidence 55443210 001144555555555554 21 222223344555555555555432
Q ss_pred CceEe-eccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCcccc--CCCCCCcccEEEecCccc---
Q 003154 698 LSKIV-LFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLAC--GSDGFPKLKVLHLKSMIW--- 771 (843)
Q Consensus 698 L~~L~-l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~f~~L~~L~L~~~~~--- 771 (843)
+..+. -++..+ ++|++|++++|.+.......++.+++|+.|++++|.+.+..+.. .....+.++.+.+.++..
T Consensus 186 l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 22221 123344 66777777777654322223445777777777777665432211 112345677777776541
Q ss_pred -ccccccccccccccceEeeecCCCCCCCCccc-cCCCCCcEEEecCCC
Q 003154 772 -LEEWTMGNEAMPKLECLVVNPCAYLKRLPEHL-WCMKNFKKLELWWPQ 818 (843)
Q Consensus 772 -l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~ 818 (843)
+..++..+..+++|+.|++++|. ++.+|..+ .++++|++|++++||
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 12345556778888888888886 55777764 788888888888876
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1e-19 Score=194.90 Aligned_cols=225 Identities=20% Similarity=0.194 Sum_probs=127.3
Q ss_pred CcccEEEcCCCCCCCCchh-ccCCCCccEEEccCCCCccc---chhHhhCCccCcEEeCCCCcCcccchhhhcccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIPSLKSL---PSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHL 615 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 615 (843)
++|++|+|++|.+..+|.. +.++++|++|++++|.++.+ |..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 4677777777777777654 56777777777777777644 4555 66777777777777777777777777777777
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKM 695 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 695 (843)
++++|.+.... ....+..+++|+.|++++ +......+..+..+++|+.|+++
T Consensus 107 ~l~~n~l~~~~---------------------~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~----- 158 (306)
T 2z66_A 107 DFQHSNLKQMS---------------------EFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMA----- 158 (306)
T ss_dssp ECTTSEEESST---------------------TTTTTTTCTTCCEEECTT--SCCEECSTTTTTTCTTCCEEECT-----
T ss_pred ECCCCcccccc---------------------cchhhhhccCCCEEECCC--CcCCccchhhcccCcCCCEEECC-----
Confidence 76666553310 001255667777777765 43433444445555555555554
Q ss_pred CCCceEeeccCCCCCCccEEEEecCCCCC-CCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccc
Q 003154 696 PRLSKIVLFENQFPPSLTHLSFSNTDLID-DPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEE 774 (843)
Q Consensus 696 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~ 774 (843)
+|.+.+ ..+..++.+++|+.|++++|.+.+. .+.....+++|++|++++|. +..
T Consensus 159 -----------------------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~ 213 (306)
T 2z66_A 159 -----------------------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFS 213 (306)
T ss_dssp -----------------------TCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC-CSB
T ss_pred -----------------------CCccccccchhHHhhCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECCCCc-cCc
Confidence 443332 2334445555555555555444331 12223345555555555544 332
Q ss_pred cc-cccccccccceEeeecCCCCCCCCccccCCC-CCcEEEecCCC
Q 003154 775 WT-MGNEAMPKLECLVVNPCAYLKRLPEHLWCMK-NFKKLELWWPQ 818 (843)
Q Consensus 775 l~-~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~ 818 (843)
++ ..+..+++|+.|++++|......|..+..++ +|+.|++++|+
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 22 2344556666666666654444455555553 66666666554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=6.7e-19 Score=199.34 Aligned_cols=222 Identities=20% Similarity=0.242 Sum_probs=113.5
Q ss_pred CcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 617 (843)
++|++|+|++|.+..+ |..++++++|++|+|++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566666666665533 34556666666666666666655544445666666666666666555443 555666666665
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhh-HhhcCCCCCCeEEeecCCCCC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLS-KSLHGLSCLESLKLVNESKMP 696 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~ 696 (843)
++|.+... ....+..+++|+.|++++ +.....++ ..+..+
T Consensus 155 ~~N~l~~~----------------------~~~~~~~l~~L~~L~l~~--~~~l~~i~~~~~~~l--------------- 195 (452)
T 3zyi_A 155 RNNPIESI----------------------PSYAFNRVPSLMRLDLGE--LKKLEYISEGAFEGL--------------- 195 (452)
T ss_dssp CSCCCCEE----------------------CTTTTTTCTTCCEEECCC--CTTCCEECTTTTTTC---------------
T ss_pred CCCCccee----------------------CHhHHhcCCcccEEeCCC--CCCccccChhhccCC---------------
Confidence 55443210 011144555555555553 11111111 123333
Q ss_pred CCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc-
Q 003154 697 RLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW- 775 (843)
Q Consensus 697 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l- 775 (843)
++|+.|++++|.+.+ .+.+..+++|+.|+|++|.+.+. .+..+.++++|+.|++++|. +..+
T Consensus 196 -------------~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~ 258 (452)
T 3zyi_A 196 -------------FNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQ-VSLIE 258 (452)
T ss_dssp -------------TTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEECTTSC-CCEEC
T ss_pred -------------CCCCEEECCCCcccc--cccccccccccEEECcCCcCccc-CcccccCccCCCEEEeCCCc-CceEC
Confidence 455555555555432 12455556666666665555432 12233445566666666554 3322
Q ss_pred ccccccccccceEeeecCCCCCCCC-ccccCCCCCcEEEecCCC
Q 003154 776 TMGNEAMPKLECLVVNPCAYLKRLP-EHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 776 ~~~~~~lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 818 (843)
+..+..+++|+.|++++|. +..+| ..+..+++|+.|++.+||
T Consensus 259 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 3334556666666666664 33343 234556666666666555
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2e-18 Score=200.86 Aligned_cols=255 Identities=20% Similarity=0.114 Sum_probs=152.5
Q ss_pred ceEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEc
Q 003154 491 RVRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKL 570 (843)
Q Consensus 491 ~~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L 570 (843)
..+.+.+. ++....++..+.++|++|.+.++.... ++. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECC-SSCCSCCCSCCCTTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEec-CCCcCccChhhCCCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 46677777 555555665557888888888877642 222 56888999999988888886 6788899999
Q ss_pred cCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCcc
Q 003154 571 NIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPD 650 (843)
Q Consensus 571 ~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 650 (843)
++|.++.+|. .+.+|++|++++|.+..+|.. +++|++|++++|.+.... ..+
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~-~~~-------------------- 160 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP-ALP-------------------- 160 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC-CCC--------------------
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcC-Ccc--------------------
Confidence 9988888876 567888899998888888864 478888888877765420 122
Q ss_pred ccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccc
Q 003154 651 ILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTL 730 (843)
Q Consensus 651 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l 730 (843)
++|+.|++++ |.... +| ..+++|+.|++++|. +..+. ..+++|+.|.+++|.+.. ++.
T Consensus 161 -----~~L~~L~L~~--N~l~~-l~---~~~~~L~~L~Ls~N~----l~~l~----~~~~~L~~L~L~~N~l~~-l~~-- 218 (622)
T 3g06_A 161 -----SELCKLWAYN--NQLTS-LP---MLPSGLQELSVSDNQ----LASLP----TLPSELYKLWAYNNRLTS-LPA-- 218 (622)
T ss_dssp -----TTCCEEECCS--SCCSC-CC---CCCTTCCEEECCSSC----CSCCC----CCCTTCCEEECCSSCCSS-CCC--
T ss_pred -----CCCCEEECCC--CCCCC-Cc---ccCCCCcEEECCCCC----CCCCC----CccchhhEEECcCCcccc-cCC--
Confidence 3344444443 22111 22 234455555555432 21111 111555555555555432 221
Q ss_pred cCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCc
Q 003154 731 EKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFK 810 (843)
Q Consensus 731 ~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~ 810 (843)
.+++|+.|+|++|.+.+. + ..+++|+.|++++|. ++.+|. .+++|+.|++++|. +..+|..+.++++|+
T Consensus 219 -~~~~L~~L~Ls~N~L~~l--p---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTSL--P---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSET 287 (622)
T ss_dssp -CCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTC
T ss_pred -CCCCCCEEEccCCccCcC--C---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccC
Confidence 235556666655555431 1 234556666666553 444443 45556666666554 335555555566666
Q ss_pred EEEecCCC
Q 003154 811 KLELWWPQ 818 (843)
Q Consensus 811 ~L~l~~~~ 818 (843)
.|++++|+
T Consensus 288 ~L~L~~N~ 295 (622)
T 3g06_A 288 TVNLEGNP 295 (622)
T ss_dssp EEECCSCC
T ss_pred EEEecCCC
Confidence 66666555
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=198.49 Aligned_cols=265 Identities=18% Similarity=0.117 Sum_probs=186.9
Q ss_pred CCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCccc
Q 003154 500 NLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSL 578 (843)
Q Consensus 500 ~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~l 578 (843)
+.....+|..+.+++++|.+.++... .++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.++.+
T Consensus 40 ~~~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 40 SGSLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp STTCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 44444566666779999999888763 45556789999999999999999866 46799999999999999999999
Q ss_pred chhHhhCCccCcEEeCCCCcCcccch--hhhcccccccccccccc-cCCCCCCCCCCccccccccccCCCCCCccccCCC
Q 003154 579 PSSLLSNLLNLYTLDMPSSYIDHTAD--DIWKLNKLRHLNFGLIT-LPAHPGKYCSSLENLNFISALHPRCCTPDILGRL 655 (843)
Q Consensus 579 p~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~-l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l 655 (843)
|+..++++++|++|++++|.+..+|. .+..+++|++|++++|. +... .+..++.+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------~~~~~~~l 173 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI----------------------QRKDFAGL 173 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----------------------CTTTTTTC
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc----------------------CHHHccCC
Confidence 99866999999999999999999987 68899999999988874 3221 11225666
Q ss_pred CCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcccc---c
Q 003154 656 PKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTL---E 731 (843)
Q Consensus 656 ~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l---~ 731 (843)
++|+.|++++ +......+..+..+++|++|++++|. +..+.- ....+ ++|+.|++++|.+.+..+..+ .
T Consensus 174 ~~L~~L~l~~--n~l~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 174 TFLEELEIDA--SDLQSYEPKSLKSIQNVSHLILHMKQ----HILLLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp CEEEEEEEEE--TTCCEECTTTTTTCSEEEEEEEECSC----STTHHHHHHHHT-TTEEEEEEESCBCTTCCCC------
T ss_pred CCCCEEECCC--CCcCccCHHHHhccccCCeecCCCCc----cccchhhhhhhc-ccccEEECCCCcccccccccccccc
Confidence 7777777776 44444456666677777777776543 222111 11224 677777777777665443332 2
Q ss_pred CCCCCcEEEeecccccCCc---cccCCCCCCcccEEEecCccccccccccc-ccccccceEeeecCCCCCC
Q 003154 732 KLPYLQVLKLKQNSYSGRK---LACGSDGFPKLKVLHLKSMIWLEEWTMGN-EAMPKLECLVVNPCAYLKR 798 (843)
Q Consensus 732 ~l~~L~~L~L~~~~~~~~~---~~~~~~~f~~L~~L~L~~~~~l~~l~~~~-~~lp~L~~L~l~~c~~l~~ 798 (843)
..+.++.+++.++.+.+.. ++.....+++|++|++++|. ++.++... +.+++|+.|++++|+....
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 4566777777766655422 22233457788888888775 66666653 6788888888888875443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=196.56 Aligned_cols=222 Identities=20% Similarity=0.260 Sum_probs=111.5
Q ss_pred CcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L 617 (843)
+++++|+|++|.+..++ ..+.++++|++|+|++|.+..+++..|.++++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666666666666443 456666666666666666666655444666666666666666666654 3556666666665
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhh-HhhcCCCCCCeEEeecCCCCC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLS-KSLHGLSCLESLKLVNESKMP 696 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~ 696 (843)
++|.+... ....+..+++|+.|++.+ +.....++ ..+..+++|+.|++
T Consensus 144 ~~N~i~~~----------------------~~~~~~~l~~L~~L~l~~--~~~l~~i~~~~~~~l~~L~~L~L------- 192 (440)
T 3zyj_A 144 RNNPIESI----------------------PSYAFNRIPSLRRLDLGE--LKRLSYISEGAFEGLSNLRYLNL------- 192 (440)
T ss_dssp CSCCCCEE----------------------CTTTTTTCTTCCEEECCC--CTTCCEECTTTTTTCSSCCEEEC-------
T ss_pred CCCccccc----------------------CHHHhhhCcccCEeCCCC--CCCcceeCcchhhcccccCeecC-------
Confidence 55544320 011245556666666654 22222221 23344444444444
Q ss_pred CCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc-
Q 003154 697 RLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW- 775 (843)
Q Consensus 697 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l- 775 (843)
++|.+.. .+.+..+++|+.|+|++|.+.+. .+..+.++++|+.|++++|. +..+
T Consensus 193 ---------------------~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~ 247 (440)
T 3zyj_A 193 ---------------------AMCNLRE--IPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQ-IQVIE 247 (440)
T ss_dssp ---------------------TTSCCSS--CCCCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred ---------------------CCCcCcc--ccccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCc-eeEEC
Confidence 4444432 12344555555555555444331 12223345555555555543 2222
Q ss_pred ccccccccccceEeeecCCCCCCCC-ccccCCCCCcEEEecCCC
Q 003154 776 TMGNEAMPKLECLVVNPCAYLKRLP-EHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 776 ~~~~~~lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 818 (843)
+..+..+++|+.|++++|. +..+| ..+..+++|+.|++.+||
T Consensus 248 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 2234455555555555554 22333 234455555555555544
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.2e-19 Score=191.02 Aligned_cols=236 Identities=22% Similarity=0.200 Sum_probs=175.9
Q ss_pred CCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC---chhccCCCCccEEEccCCCCc
Q 003154 500 NLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY---PAGIENLSRLRYLKLNIPSLK 576 (843)
Q Consensus 500 ~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l---p~~i~~L~~Lr~L~L~~~~i~ 576 (843)
+.....++..+.++++.|.+.++... .++..+|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+.
T Consensus 16 ~~~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 16 SKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SSCCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred CCCcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence 33444456555789999999988763 45667789999999999999998755 678888999999999999999
Q ss_pred ccchhHhhCCccCcEEeCCCCcCcccch--hhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCC
Q 003154 577 SLPSSLLSNLLNLYTLDMPSSYIDHTAD--DIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGR 654 (843)
Q Consensus 577 ~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 654 (843)
.+|..+ .++++|++|++++|.+..+|. .+..+++|++|++++|.+... .+..+..
T Consensus 92 ~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~ 148 (306)
T 2z66_A 92 TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----------------------FNGIFNG 148 (306)
T ss_dssp EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC----------------------STTTTTT
T ss_pred cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc----------------------chhhccc
Confidence 999987 999999999999999988864 688999999999777765421 2233778
Q ss_pred CCCCceEeeecCCcchhh-hhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcccccC
Q 003154 655 LPKLGSLQICGDLNYYQS-LLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEK 732 (843)
Q Consensus 655 l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~ 732 (843)
+++|+.|++++ +...+ ..+..+..+++|+.|++++|. +..+.. ++..+ ++|+.|++++|.+.+..+..+..
T Consensus 149 l~~L~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 149 LSSLEVLKMAG--NSFQENFLPDIFTELRNLTFLDLSQCQ----LEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp CTTCCEEECTT--CEEGGGEECSCCTTCTTCCEEECTTSC----CCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTT
T ss_pred CcCCCEEECCC--CccccccchhHHhhCcCCCEEECCCCC----cCCcCHHHhcCC-CCCCEEECCCCccCccChhhccC
Confidence 89999999997 55544 466677778888888887653 333321 34455 67777777777776655556777
Q ss_pred CCCCcEEEeecccccCCccccCCCCCC-cccEEEecCcc
Q 003154 733 LPYLQVLKLKQNSYSGRKLACGSDGFP-KLKVLHLKSMI 770 (843)
Q Consensus 733 l~~L~~L~L~~~~~~~~~~~~~~~~f~-~L~~L~L~~~~ 770 (843)
+++|+.|+|++|.+.+... .....+| +|++|++++|+
T Consensus 222 l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCC
T ss_pred cccCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCC
Confidence 7777777777776655322 2233453 67777777765
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=6.7e-20 Score=197.26 Aligned_cols=250 Identities=15% Similarity=0.090 Sum_probs=174.6
Q ss_pred chHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcc
Q 003154 531 DSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKL 609 (843)
Q Consensus 531 ~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L 609 (843)
.+...+..+++|++|+|++|.+..++ ..++++++|++|++++|.++.+++ + ..+++|++|++++|.+..+|. +
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----G 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----C
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----C
Confidence 34566777888999999999888665 678899999999999998887776 4 889999999999998887763 4
Q ss_pred cccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhh-cCCCCCCeEE
Q 003154 610 NKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSL-HGLSCLESLK 688 (843)
Q Consensus 610 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~ 688 (843)
++|++|++++|.+.......+++|++|....+. .....+..++.+++|+.|++++ |......+..+ ..+++|+.|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCC--CCCCcccHHHHhhccCcCCEEE
Confidence 889999988887765433355667766643332 2222233366778888888886 54444444444 3577888888
Q ss_pred eecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecC
Q 003154 689 LVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKS 768 (843)
Q Consensus 689 l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~ 768 (843)
+++|. +..+. ....+ ++|+.|++++|.+.+ .++.+..+++|+.|+|++|.+.. ++.....+++|+.|++++
T Consensus 176 L~~N~----l~~~~-~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 176 LQYNF----IYDVK-GQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CTTSC----CCEEE-CCCCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTT
T ss_pred CCCCc----Ccccc-ccccc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccC
Confidence 87654 44443 22235 788888888888764 34457788888888888777763 344455678888888888
Q ss_pred cccc-cccccccccccccceEeeecCCCCCC
Q 003154 769 MIWL-EEWTMGNEAMPKLECLVVNPCAYLKR 798 (843)
Q Consensus 769 ~~~l-~~l~~~~~~lp~L~~L~l~~c~~l~~ 798 (843)
|+.. ..++.....+++|+.|.+.+|+.++.
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccC
Confidence 7744 24455566778888888877665543
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=195.27 Aligned_cols=242 Identities=16% Similarity=0.155 Sum_probs=184.8
Q ss_pred EEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEcc
Q 003154 493 RRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLN 571 (843)
Q Consensus 493 r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~ 571 (843)
+.+... +.....+|..+.++++.|.+.++... .+....|.++++|++|+|++|.+..++ ..+.++++|++|+|+
T Consensus 46 ~~v~c~-~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICV-RKNLREVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp CEEECC-SCCCSSCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CEEEeC-CCCcCcCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 344444 44555567666889999999988763 455677899999999999999998665 679999999999999
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCcc
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPD 650 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 650 (843)
+|.++.+|+..|.++++|++|+|++|.+..+|. .+..+++|++|++++|... ..+ ...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l----------~~i-----------~~~ 179 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL----------SYI-----------SEG 179 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC----------CEE-----------CTT
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc----------cee-----------Ccc
Confidence 999999998766999999999999999999875 5889999999996653321 111 122
Q ss_pred ccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCccc
Q 003154 651 ILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPT 729 (843)
Q Consensus 651 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~ 729 (843)
.+..+++|+.|++++ |... .+| .+..+++|+.|++++|. +..+.- .+..+ ++|+.|++++|.+....+..
T Consensus 180 ~~~~l~~L~~L~L~~--n~l~-~~~-~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAM--CNLR-EIP-NLTPLIKLDELDLSGNH----LSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp TTTTCSSCCEEECTT--SCCS-SCC-CCTTCSSCCEEECTTSC----CCEECTTTTTTC-TTCCEEECTTCCCCEECTTS
T ss_pred hhhcccccCeecCCC--CcCc-ccc-ccCCCcccCEEECCCCc----cCccChhhhccC-ccCCEEECCCCceeEEChhh
Confidence 378899999999997 4333 333 46778888888888654 443321 34556 78888888888887777778
Q ss_pred ccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 730 LEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 730 l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
+..+++|+.|+|++|.+.... ......+++|+.|+|++|+
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEcCCCC
Confidence 888889999999888777532 3334567888888888876
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2.1e-18 Score=195.34 Aligned_cols=242 Identities=19% Similarity=0.173 Sum_probs=184.7
Q ss_pred EEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEcc
Q 003154 493 RRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLN 571 (843)
Q Consensus 493 r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~ 571 (843)
+.+... +.....++..+.++++.|.+.++... .+....|.++++|++|+|++|.+..++ ..+.++++|++|+|+
T Consensus 57 ~~v~c~-~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCT-RRGLSEVPQGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECC-SSCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEEC-CCCcCccCCCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 344444 44445566666889999999988763 455677899999999999999998655 789999999999999
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCcc
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPD 650 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 650 (843)
+|.++.+|+..|.++++|++|+|++|.+..+|. .+..+++|++|++++|.. +..+ ...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~----------l~~i-----------~~~ 190 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK----------LEYI-----------SEG 190 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT----------CCEE-----------CTT
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC----------cccc-----------Chh
Confidence 999999999876999999999999999999976 588999999999665321 1111 122
Q ss_pred ccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCccc
Q 003154 651 ILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPT 729 (843)
Q Consensus 651 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~ 729 (843)
.+..+++|+.|++++ |.... ++ .+..+++|+.|++++|. +..+.- ++..+ ++|+.|++++|.+....+..
T Consensus 191 ~~~~l~~L~~L~L~~--n~l~~-~~-~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGM--CNIKD-MP-NLTPLVGLEELEMSGNH----FPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp TTTTCTTCCEEECTT--SCCSS-CC-CCTTCTTCCEEECTTSC----CSEECGGGGTTC-TTCCEEECTTSCCCEECTTT
T ss_pred hccCCCCCCEEECCC--Ccccc-cc-cccccccccEEECcCCc----CcccCcccccCc-cCCCEEEeCCCcCceECHHH
Confidence 377899999999997 43332 32 46778888888888654 444322 45566 78888888888887777778
Q ss_pred ccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 730 LEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 730 l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
+..+++|+.|+|++|.+... .......+++|+.|+|++|+
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCC-CTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCcc-ChHHhccccCCCEEEccCCC
Confidence 88888899999888877643 23334568888888888876
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1e-18 Score=184.92 Aligned_cols=248 Identities=19% Similarity=0.166 Sum_probs=161.3
Q ss_pred CCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCc-Cccc-chhhhcccccccc
Q 003154 539 FKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSY-IDHT-ADDIWKLNKLRHL 615 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L 615 (843)
.+.|++|+|+++.+..+| ..+..+++|++|++++|.++.+++..|+++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 357888888888877665 457788888888888888887744434788888888888885 7777 5667788888888
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKM 695 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 695 (843)
++++|.+... .+..+..+++|+.|++++ +......+..+..+++|+.|++++|.
T Consensus 111 ~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~-- 164 (285)
T 1ozn_A 111 HLDRCGLQEL----------------------GPGLFRGLAALQYLYLQD--NALQALPDDTFRDLGNLTHLFLHGNR-- 164 (285)
T ss_dssp ECTTSCCCCC----------------------CTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred ECCCCcCCEE----------------------CHhHhhCCcCCCEEECCC--CcccccCHhHhccCCCccEEECCCCc--
Confidence 8666665431 122366777888888876 44444444556777888888887653
Q ss_pred CCCceEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccc
Q 003154 696 PRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEE 774 (843)
Q Consensus 696 ~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~ 774 (843)
+..+.. ++..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.. ......+++|++|++++|+....
T Consensus 165 --l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 165 --ISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp --CCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECS
T ss_pred --ccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccCC
Confidence 444432 24456 78888888888877766777888888888888888776532 22345678888888888763222
Q ss_pred cccccccccccceEeeecCCCCCCCCccccC--CCCCcEEEecCC
Q 003154 775 WTMGNEAMPKLECLVVNPCAYLKRLPEHLWC--MKNFKKLELWWP 817 (843)
Q Consensus 775 l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~~ 817 (843)
.+. ...+..|+.+....+......|..+.+ +..+...++.+|
T Consensus 241 ~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 241 CRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp GGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 211 112234455555555444445554433 334444455555
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.6e-19 Score=192.68 Aligned_cols=237 Identities=18% Similarity=0.119 Sum_probs=132.1
Q ss_pred CcccEEEcCCCCCCCCchh-ccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFG 618 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 618 (843)
..++.++++++.+...+.. +..+++|++|++++|.++.+++..|+++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 4467778887776644443 4567799999999999999887656999999999999999988765 8999999999988
Q ss_pred ccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCC
Q 003154 619 LITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRL 698 (843)
Q Consensus 619 ~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 698 (843)
+|.+.. ++..++|++|....+. ..... ...+++|+.|++++ |......+..+..++
T Consensus 89 ~n~l~~--l~~~~~L~~L~l~~n~-l~~~~---~~~~~~L~~L~l~~--N~l~~~~~~~~~~l~---------------- 144 (317)
T 3o53_A 89 NNYVQE--LLVGPSIETLHAANNN-ISRVS---CSRGQGKKNIYLAN--NKITMLRDLDEGCRS---------------- 144 (317)
T ss_dssp SSEEEE--EEECTTCCEEECCSSC-CSEEE---ECCCSSCEEEECCS--SCCCSGGGBCTGGGS----------------
T ss_pred CCcccc--ccCCCCcCEEECCCCc-cCCcC---ccccCCCCEEECCC--CCCCCccchhhhccC----------------
Confidence 887754 1222444444422221 11000 12234455555544 333332233333444
Q ss_pred ceEeeccCCCCCCccEEEEecCCCCCCCcccc-cCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccc
Q 003154 699 SKIVLFENQFPPSLTHLSFSNTDLIDDPMPTL-EKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTM 777 (843)
Q Consensus 699 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~ 777 (843)
+|+.|++++|.+.+..+..+ +.+++|++|+|++|.+.+. + ....+++|++|++++|. +..++.
T Consensus 145 ------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~-~~~~l~~L~~L~Ls~N~-l~~l~~ 208 (317)
T 3o53_A 145 ------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K-GQVVFAKLKTLDLSSNK-LAFMGP 208 (317)
T ss_dssp ------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E-CCCCCTTCCEEECCSSC-CCEECG
T ss_pred ------------CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--c-cccccccCCEEECCCCc-CCcchh
Confidence 44555555544443333333 2345555555554444322 1 11124455555555443 344443
Q ss_pred ccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 778 GNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 778 ~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.+..+++|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 209 ~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp GGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred hhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 44445555555555543 33444444445555555555444
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.5e-19 Score=201.39 Aligned_cols=236 Identities=16% Similarity=0.102 Sum_probs=171.2
Q ss_pred cCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccc
Q 003154 538 MFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLN 616 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 616 (843)
.+++|++|+|++|.+..+| ..++.+++|++|+|++|.++..++ + +.+++|++|+|++|.+..+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3448889999988888654 678888899999998888887766 4 8888899999988888877643 7888888
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhc-CCCCCCeEEeecCCCC
Q 003154 617 FGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLH-GLSCLESLKLVNESKM 695 (843)
Q Consensus 617 L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~~~~ 695 (843)
+++|.+.......+++|++|....+. .....+..++.+++|+.|++++ |...+..|..+. .+++|+.|++++|.
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~l~~~l~~L~~L~Ls~N~-- 180 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNF-- 180 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEECTTSC--
T ss_pred CcCCcCCCCCccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCC--CCCCCcChHHHhhhCCcccEEecCCCc--
Confidence 88888776543456677777644332 2333344477888889998887 666665566664 68888999888664
Q ss_pred CCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccc-cc
Q 003154 696 PRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWL-EE 774 (843)
Q Consensus 696 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l-~~ 774 (843)
+..+. ....+ ++|+.|+|++|.+++ .|+.++.+++|+.|+|++|.+.+ ++.....+++|+.|++++|+.. ..
T Consensus 181 --l~~~~-~~~~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 181 --IYDVK-GQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp --CCEEE-CCCCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred --ccccc-ccccC-CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcc
Confidence 44443 22345 888899998888865 44458888889999998888774 4444566788889988888744 24
Q ss_pred cccccccccccceEeee
Q 003154 775 WTMGNEAMPKLECLVVN 791 (843)
Q Consensus 775 l~~~~~~lp~L~~L~l~ 791 (843)
++.....++.|+.|.+.
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 45556778888888776
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=7.1e-19 Score=200.47 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=129.7
Q ss_pred CCchhccCCC----CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCC
Q 003154 554 QYPAGIENLS----RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKY 629 (843)
Q Consensus 554 ~lp~~i~~L~----~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~ 629 (843)
.+|..+..+. +|++|+|++|.++.+|+..|+++++|++|+|++|.+..+++ +..+++|++|++++|.+.+ ++.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE--LLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE--EEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC--CCC
Confidence 5566665555 89999999999999887555999999999999999987765 9999999999988887754 112
Q ss_pred CCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceE-eeccCCC
Q 003154 630 CSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKI-VLFENQF 708 (843)
Q Consensus 630 l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L-~l~~~~l 708 (843)
. ++|+.|++++ |......+ ..+++|+.|++++|. +..+ ...+..+
T Consensus 98 ~-------------------------~~L~~L~L~~--N~l~~~~~---~~l~~L~~L~L~~N~----l~~~~~~~~~~l 143 (487)
T 3oja_A 98 G-------------------------PSIETLHAAN--NNISRVSC---SRGQGKKNIYLANNK----ITMLRDLDEGCR 143 (487)
T ss_dssp C-------------------------TTCCEEECCS--SCCCCEEE---CCCSSCEEEECCSSC----CCSGGGBCGGGG
T ss_pred C-------------------------CCcCEEECcC--CcCCCCCc---cccCCCCEEECCCCC----CCCCCchhhcCC
Confidence 2 3444444443 22222111 123445555554432 1111 0122233
Q ss_pred CCCccEEEEecCCCCCCCccccc-CCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccce
Q 003154 709 PPSLTHLSFSNTDLIDDPMPTLE-KLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLEC 787 (843)
Q Consensus 709 p~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~ 787 (843)
++|+.|++++|.+++..|..+. .+++|+.|+|++|.+.+. .....+++|++|+|++|. +..++..+..+++|+.
T Consensus 144 -~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTW 218 (487)
T ss_dssp -SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSE
T ss_pred -CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCCC-CCCCCHhHcCCCCccE
Confidence 5555555555555544444443 455555555555555432 111235555555555554 4444444555555666
Q ss_pred EeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 788 LVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 788 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
|++++|. +..+|..+..+++|+.|++++|+
T Consensus 219 L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 219 ISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred EEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 6665554 33455555555556666555554
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=2.9e-20 Score=211.30 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=18.1
Q ss_pred ccccceEeeecCCCCC----CCCccccCCCCCcEEEecCCC
Q 003154 782 MPKLECLVVNPCAYLK----RLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 782 lp~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3455555555554221 344444455555555555554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=6.4e-20 Score=196.91 Aligned_cols=220 Identities=22% Similarity=0.193 Sum_probs=118.3
Q ss_pred ccEEEcCCCCCC--CCchhcc-------CCCCccEEEccCCCCc-ccchhHh-hCCccCcEEeCCCCcCcccchhhhcc-
Q 003154 542 LRVLDLGSLFLD--QYPAGIE-------NLSRLRYLKLNIPSLK-SLPSSLL-SNLLNLYTLDMPSSYIDHTADDIWKL- 609 (843)
Q Consensus 542 LrvL~L~~~~~~--~lp~~i~-------~L~~Lr~L~L~~~~i~-~lp~~i~-~~L~~L~~L~L~~~~l~~lp~~i~~L- 609 (843)
|++|+|+++.+. .+|..+. ++.+|++|++++|.++ .+|..++ +.+++|++|++++|.+..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 555566665553 3454444 5666666666666665 3454432 55666666666666665555555555
Q ss_pred ----cccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhh--hhHhh--cCC
Q 003154 610 ----NKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSL--LSKSL--HGL 681 (843)
Q Consensus 610 ----~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~l--~~l 681 (843)
++|++|++++|.+... .+..++.+++|+.|++++ |...+. ++..+ ..+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~----------------------~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNF----------------------SCEQVRVFPALSTLDLSD--NPELGERGLISALCPLKF 200 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCC----------------------CTTTCCCCSSCCEEECCS--CTTCHHHHHHHHSCTTSC
T ss_pred HhhcCCCcEEEeeCCCCccc----------------------hHHHhccCCCCCEEECCC--CCcCcchHHHHHHHhccC
Confidence 5666666555554321 112256666677777765 433222 22232 344
Q ss_pred CCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCC--CCc-ccccCCCCCcEEEeecccccCCccccCCCCC
Q 003154 682 SCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLID--DPM-PTLEKLPYLQVLKLKQNSYSGRKLACGSDGF 758 (843)
Q Consensus 682 ~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f 758 (843)
++|++|++++|.+.. ..+ ..+..+++|+.|+|++|.+.+.........+
T Consensus 201 ----------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 201 ----------------------------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ----------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ----------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 445555555554431 111 1223556666666666665543322223335
Q ss_pred CcccEEEecCcccccccccccccccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 759 PKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 759 ~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
++|++|++++|. ++.+|.... ++|+.|++++|. ++.+|. +..+++|++|++++++
T Consensus 253 ~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 666666666654 445554433 667777777665 444555 6667777777777665
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.7e-18 Score=180.71 Aligned_cols=221 Identities=20% Similarity=0.192 Sum_probs=173.2
Q ss_pred EEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEccC
Q 003154 494 RFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNI 572 (843)
Q Consensus 494 ~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~ 572 (843)
.+... +.....++..+.++++.|.+.++... .++...|..+++|++|+|++|.+..+ |..++.+++|++|++++
T Consensus 15 ~~~c~-~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 15 TTSCP-QQGLQAVPVGIPAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp EEECC-SSCCSSCCTTCCTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEcC-cCCcccCCcCCCCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34444 44444455555789999999887763 45566789999999999999999866 77899999999999999
Q ss_pred CC-CcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCcc
Q 003154 573 PS-LKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPD 650 (843)
Q Consensus 573 ~~-i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 650 (843)
|. +..+++..+.++++|++|++++|.+..+ |..+..+++|++|++++|.+... .+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~ 147 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL----------------------PDD 147 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------CTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc----------------------CHh
Confidence 97 8888655559999999999999999888 56688999999999888776531 112
Q ss_pred ccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEe-eccCCCCCCccEEEEecCCCCCCCccc
Q 003154 651 ILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIV-LFENQFPPSLTHLSFSNTDLIDDPMPT 729 (843)
Q Consensus 651 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~-l~~~~lp~~L~~L~L~~~~l~~~~~~~ 729 (843)
.++.+++|+.|++++ |......+..+..+++|+.|++++|. +..+. -++..+ ++|+.|++++|.+.+..+..
T Consensus 148 ~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHG--NRISSVPERAFRGLHSLDRLLLHQNR----VAHVHPHAFRDL-GRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp TTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTC-TTCCEEECCSSCCSCCCHHH
T ss_pred HhccCCCccEEECCC--CcccccCHHHhcCccccCEEECCCCc----ccccCHhHccCc-ccccEeeCCCCcCCcCCHHH
Confidence 267788899999987 54444444567888999999998764 44332 145566 89999999999998776677
Q ss_pred ccCCCCCcEEEeecccccC
Q 003154 730 LEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 730 l~~l~~L~~L~L~~~~~~~ 748 (843)
++.+++|+.|+|++|.+..
T Consensus 221 ~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HTTCTTCCEEECCSSCEEC
T ss_pred cccCcccCEEeccCCCccC
Confidence 9999999999999998764
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=3.3e-17 Score=184.79 Aligned_cols=288 Identities=21% Similarity=0.207 Sum_probs=174.1
Q ss_pred ccceEEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEE
Q 003154 489 RKRVRRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYL 568 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L 568 (843)
..+.+++.+. ++....++ ...++|++|.+.++... .++ .|.++++|++|++++|.+..+|..+ .+|++|
T Consensus 110 ~~~L~~L~l~-~n~l~~l~-~~~~~L~~L~L~~n~l~----~lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L 178 (454)
T 1jl5_A 110 PQSLKSLLVD-NNNLKALS-DLPPLLEYLGVSNNQLE----KLP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI 178 (454)
T ss_dssp CTTCCEEECC-SSCCSCCC-SCCTTCCEEECCSSCCS----SCC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred cCCCcEEECC-CCccCccc-CCCCCCCEEECcCCCCC----CCc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence 3567788777 54443222 22468888888877653 233 3788888888888888888777544 478888
Q ss_pred EccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCC-CCCCCCCccccccccccCCCCC
Q 003154 569 KLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAH-PGKYCSSLENLNFISALHPRCC 647 (843)
Q Consensus 569 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~-~~~~l~~L~~L~~~~~~~~~~~ 647 (843)
++++|.++.+| .+ +++++|++|++++|.+..+|... ++|++|++++|.+... .+..+++|++|....+. ...
T Consensus 179 ~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~--l~~ 251 (454)
T 1jl5_A 179 AAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNL--LKT 251 (454)
T ss_dssp ECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSS
T ss_pred ECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCc--CCc
Confidence 88888888877 45 88888888888888887776533 4788888888777632 12255566666543322 112
Q ss_pred CccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCC------CCCCCceEeeccC------CCCCCccEE
Q 003154 648 TPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNES------KMPRLSKIVLFEN------QFPPSLTHL 715 (843)
Q Consensus 648 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l~~~------~lp~~L~~L 715 (843)
++. .+++|+.|++++ |...+ +|.. .++|+.|++++|. -+++|+.|.+..+ .+|++|+.|
T Consensus 252 l~~---~~~~L~~L~l~~--N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L 322 (454)
T 1jl5_A 252 LPD---LPPSLEALNVRD--NYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322 (454)
T ss_dssp CCS---CCTTCCEEECCS--SCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE
T ss_pred ccc---cccccCEEECCC--Ccccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEE
Confidence 222 236788888876 43332 3322 3678888887753 2357777777443 344689999
Q ss_pred EEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccc--ccccccccc-----------
Q 003154 716 SFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLE--EWTMGNEAM----------- 782 (843)
Q Consensus 716 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~--~l~~~~~~l----------- 782 (843)
++++|.+.+ .|.. +++|+.|++++|.+.. ++. .+++|++|++++|.... .+|..++.+
T Consensus 323 ~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 323 NVSNNKLIE-LPAL---PPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred ECCCCcccc-cccc---CCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 999999875 4433 6899999999998874 222 47899999999987444 456666666
Q ss_pred --cccceEeeecCCCCC--CCCccccCCCCCcEEEecCCC
Q 003154 783 --PKLECLVVNPCAYLK--RLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 783 --p~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~ 818 (843)
++|+.|++++|+... .+|. +|+.|.+.+|.
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp ----------------------------------------
T ss_pred ccCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence 899999999998654 5554 45555555543
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=6e-20 Score=208.68 Aligned_cols=320 Identities=15% Similarity=0.036 Sum_probs=182.2
Q ss_pred ccceEEEEEeeCCCCCc-cccc-c--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC-Cchhc-cCC
Q 003154 489 RKRVRRFCANVNLGELD-SFDR-L--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ-YPAGI-ENL 562 (843)
Q Consensus 489 ~~~~r~Lsl~~~~~~~~-~~~~-~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~-lp~~i-~~L 562 (843)
+.++++|.+. +..... .+.. + ++++++|.+.++.............+..+++|++|+|++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred Cccceehhhh-hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 3456677776 443322 2222 2 66777777776664210001234456667777777777776652 12222 233
Q ss_pred C----CccEEEccCCCCc-----ccchhHhhCCccCcEEeCCCCcCccc-chhhh-----cccccccccccccccCCCC-
Q 003154 563 S----RLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIW-----KLNKLRHLNFGLITLPAHP- 626 (843)
Q Consensus 563 ~----~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~L~~~~l~~~~- 626 (843)
. +|++|++++|.++ .+|..+ .++++|++|++++|.+... +..+. .+++|++|++++|.+....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 3 5777777777766 234444 7777777777777766433 22222 2456777776666655421
Q ss_pred ------CCCCCCccccccccccCCCCCCcc---ccC-CCCCCceEeeecCCcchhh----hhhHhhcCCCCCCeEEeecC
Q 003154 627 ------GKYCSSLENLNFISALHPRCCTPD---ILG-RLPKLGSLQICGDLNYYQS----LLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 627 ------~~~l~~L~~L~~~~~~~~~~~~~~---~l~-~l~~L~~L~l~~~~~~~~~----~l~~~l~~l~~L~~L~l~~~ 692 (843)
+..+++|++|....+......... .+. ..++|+.|++++ +.... .++..+..+++|++|++++|
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~--n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES--CGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT--SCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC--CCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 013455555553332210000001 011 244666666665 22221 24455555666666666643
Q ss_pred CCCCCCceEee------ccCCCCCCccEEEEecCCCCCC----CcccccCCCCCcEEEeecccccCCcccc----CCCCC
Q 003154 693 SKMPRLSKIVL------FENQFPPSLTHLSFSNTDLIDD----PMPTLEKLPYLQVLKLKQNSYSGRKLAC----GSDGF 758 (843)
Q Consensus 693 ~~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~----~~~~f 758 (843)
. +....+ ....+ ++|++|++++|.++.. .+..+..+++|+.|++++|.+.+..... .....
T Consensus 238 ~----l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 238 K----LGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp B----CHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred c----CChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 2 111100 11235 7899999999988653 4556777999999999988775432211 12234
Q ss_pred CcccEEEecCcccccc-----cccccccccccceEeeecCCCCCCCCc----cccC-CCCCcEEEecCCC
Q 003154 759 PKLKVLHLKSMIWLEE-----WTMGNEAMPKLECLVVNPCAYLKRLPE----HLWC-MKNFKKLELWWPQ 818 (843)
Q Consensus 759 ~~L~~L~L~~~~~l~~-----l~~~~~~lp~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~~~ 818 (843)
++|++|++++|. +.. ++..+..+++|+.|++++|..-...+. .+.. .++|++|++++|.
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 799999999987 432 344456789999999999964322222 2322 7899999999987
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=7.9e-19 Score=206.15 Aligned_cols=321 Identities=12% Similarity=0.087 Sum_probs=185.2
Q ss_pred cceEEEEEeeCCCCCc-ccccc---ccc-eeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC-----Cchhc
Q 003154 490 KRVRRFCANVNLGELD-SFDRL---DSY-LHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ-----YPAGI 559 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~-~~~~~---~~~-LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~-----lp~~i 559 (843)
.++++|.+. +..... .+..+ +++ |++|.+.++... ..........++++|++|+|++|.+.. ++..+
T Consensus 112 ~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp TTCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 457778777 443321 22222 334 999988876632 122334555688999999999987542 33445
Q ss_pred cCCCCccEEEccCCCCc-----ccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCC------CCC
Q 003154 560 ENLSRLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAH------PGK 628 (843)
Q Consensus 560 ~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~------~~~ 628 (843)
..+++|++|++++|.++ .++..+ .++++|++|++++|.+..+|..+..+++|++|+++.+..... .+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 67888999999988876 333333 788999999999998888888888889999988764221100 111
Q ss_pred CCC-----------------------CccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCC
Q 003154 629 YCS-----------------------SLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLE 685 (843)
Q Consensus 629 ~l~-----------------------~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~ 685 (843)
.++ +|++|....+......+...+..+++|+.|++.+ +.....++.....+++|+
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCC
Confidence 333 3444433222211111112235555666665553 333333444445566666
Q ss_pred eEEeec----------C-C-----------CCCCCceEeeccCC------------CCCCccEEEEec----CCCCCC--
Q 003154 686 SLKLVN----------E-S-----------KMPRLSKIVLFENQ------------FPPSLTHLSFSN----TDLIDD-- 725 (843)
Q Consensus 686 ~L~l~~----------~-~-----------~~~~L~~L~l~~~~------------lp~~L~~L~L~~----~~l~~~-- 725 (843)
+|+++. + . .+++|++|.++.+. + ++|+.|++++ +.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchH
Confidence 666662 1 1 35666666662222 3 5667777752 233321
Q ss_pred ---CcccccCCCCCcEEEeeccc--ccCCccccCCCCCCcccEEEecCcccccc--cccccccccccceEeeecCCCCC-
Q 003154 726 ---PMPTLEKLPYLQVLKLKQNS--YSGRKLACGSDGFPKLKVLHLKSMIWLEE--WTMGNEAMPKLECLVVNPCAYLK- 797 (843)
Q Consensus 726 ---~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~f~~L~~L~L~~~~~l~~--l~~~~~~lp~L~~L~l~~c~~l~- 797 (843)
.+..+..+++|+.|+|++|. +++..+......+++|++|++++|. +.. ++.....+++|++|+|++|+...
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 11124456777777775432 3322222222346777888877765 332 23334567888888888888321
Q ss_pred CCCccccCCCCCcEEEecCCC
Q 003154 798 RLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 798 ~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.++..+..+++|++|++++|+
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhcCccCeeECcCCc
Confidence 234455678888888888887
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=2.6e-16 Score=183.11 Aligned_cols=232 Identities=22% Similarity=0.135 Sum_probs=157.3
Q ss_pred cccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLI 620 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 620 (843)
.+++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++|.+..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 46666666666666666554 566666666666666665 35666666666666666665 5566666666666
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCce
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSK 700 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 700 (843)
.+..... .+++|++|....+. ...++. .+++|+.|++++ |... .++. .+++|+.|++++|. +..
T Consensus 112 ~l~~l~~-~l~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~--N~l~-~l~~---~~~~L~~L~L~~N~----l~~ 175 (622)
T 3g06_A 112 PLTHLPA-LPSGLCKLWIFGNQ--LTSLPV---LPPGLQELSVSD--NQLA-SLPA---LPSELCKLWAYNNQ----LTS 175 (622)
T ss_dssp CCCCCCC-CCTTCCEEECCSSC--CSCCCC---CCTTCCEEECCS--SCCS-CCCC---CCTTCCEEECCSSC----CSC
T ss_pred cCCCCCC-CCCCcCEEECCCCC--CCcCCC---CCCCCCEEECcC--CcCC-CcCC---ccCCCCEEECCCCC----CCC
Confidence 6554221 44555555533221 111222 247899999987 4333 2332 35789999998754 333
Q ss_pred EeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccc
Q 003154 701 IVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNE 780 (843)
Q Consensus 701 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~ 780 (843)
+. ..+ ++|+.|++++|.+++ ++. .+++|+.|++++|.+... + ..+++|++|++++|. ++.+| .
T Consensus 176 l~---~~~-~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l--~---~~~~~L~~L~Ls~N~-L~~lp---~ 238 (622)
T 3g06_A 176 LP---MLP-SGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL--P---ALPSGLKELIVSGNR-LTSLP---V 238 (622)
T ss_dssp CC---CCC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC--C---CCCTTCCEEECCSSC-CSCCC---C
T ss_pred Cc---ccC-CCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc--C---CCCCCCCEEEccCCc-cCcCC---C
Confidence 32 234 899999999999865 333 358999999998887642 2 246899999999985 77776 5
Q ss_pred cccccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 781 AMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 781 ~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
.+++|+.|++++|. +..+|. .+++|+.|++++|.
T Consensus 239 ~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 239 LPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC
Confidence 67999999999996 667887 67899999999987
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1.2e-17 Score=179.26 Aligned_cols=231 Identities=17% Similarity=0.139 Sum_probs=150.4
Q ss_pred cccccccceeEEEeecCCCCCCCCcchHHH------hccCCcccEEEcCCCCCC-CCchhc--cCCCCccEEEccCCCCc
Q 003154 506 SFDRLDSYLHSFLYLSPESDHLNPRDSMKI------CKMFKFLRVLDLGSLFLD-QYPAGI--ENLSRLRYLKLNIPSLK 576 (843)
Q Consensus 506 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~------~~~~~~LrvL~L~~~~~~-~lp~~i--~~L~~Lr~L~L~~~~i~ 576 (843)
.+..+...++.|.+.++.... ..++... +.++++|++|+|++|.+. .+|..+ +.+++|++|++++|.++
T Consensus 57 ~p~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 57 DLGQFTDIIKSLSLKRLTVRA--ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp CCHHHHHHHHHCCCCEEEEEE--EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred cHHHHHHHHhhcccccccccC--CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence 454443346666665544321 1122221 236899999999999987 788876 89999999999999999
Q ss_pred ccchhHhhCC-----ccCcEEeCCCCcCcccc-hhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCcc
Q 003154 577 SLPSSLLSNL-----LNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPD 650 (843)
Q Consensus 577 ~lp~~i~~~L-----~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 650 (843)
.+|..+ +.+ ++|++|++++|.+..+| ..++.+++|++|++++|.+.+. . ..+..
T Consensus 135 ~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~---------~~~~~ 194 (312)
T 1wwl_A 135 TRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE----------R---------GLISA 194 (312)
T ss_dssp SSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH----------H---------HHHHH
T ss_pred chhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc----------h---------HHHHH
Confidence 988776 877 99999999999999886 7799999999999888775320 0 00111
Q ss_pred -ccCCCCCCceEeeecCCcchh--hhhh-HhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCC
Q 003154 651 -ILGRLPKLGSLQICGDLNYYQ--SLLS-KSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDP 726 (843)
Q Consensus 651 -~l~~l~~L~~L~l~~~~~~~~--~~l~-~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 726 (843)
.++.+++|+.|++++ |... ..++ ..+..+++|+.|+++ +|.+.+..
T Consensus 195 ~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~l~~L~~L~Ls----------------------------~N~l~~~~ 244 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRN--AGMETPSGVCSALAAARVQLQGLDLS----------------------------HNSLRDAA 244 (312)
T ss_dssp SCTTSCTTCCEEECTT--SCCCCHHHHHHHHHHTTCCCSEEECT----------------------------TSCCCSSC
T ss_pred HHhccCCCCCEEECCC--CcCcchHHHHHHHHhcCCCCCEEECC----------------------------CCcCCccc
Confidence 137889999999997 4433 1233 223455555555554 44443333
Q ss_pred c-ccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccccccccccceEeeecCC
Q 003154 727 M-PTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEAMPKLECLVVNPCA 794 (843)
Q Consensus 727 ~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~ 794 (843)
+ +.+..+++|+.|+|++|.+.. ++... +++|++|++++|. ++.+|. +..+++|+.|++++|+
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred chhhhhhcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 2 334445666666666665552 22211 2566666666654 555544 5666777777777665
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.6e-16 Score=168.20 Aligned_cols=200 Identities=23% Similarity=0.221 Sum_probs=141.1
Q ss_pred hccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccc
Q 003154 536 CKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHL 615 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 615 (843)
+.++++|+.++++++.++.+|..+. .+|++|++++|.++.+++..|.++++|++|+|++|.+..+|.. ..+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5677888999999988888887765 6889999999988888766558899999999999988888764 788888888
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKM 695 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 695 (843)
++++|.+.. ++..+..+++|+.|++++ |......+..+..+++|+.|++++|.
T Consensus 83 ~Ls~N~l~~-----------------------l~~~~~~l~~L~~L~l~~--N~l~~l~~~~~~~l~~L~~L~L~~N~-- 135 (290)
T 1p9a_G 83 DLSHNQLQS-----------------------LPLLGQTLPALTVLDVSF--NRLTSLPLGALRGLGELQELYLKGNE-- 135 (290)
T ss_dssp ECCSSCCSS-----------------------CCCCTTTCTTCCEEECCS--SCCCCCCSSTTTTCTTCCEEECTTSC--
T ss_pred ECCCCcCCc-----------------------CchhhccCCCCCEEECCC--CcCcccCHHHHcCCCCCCEEECCCCC--
Confidence 877776542 122256777788888876 54444444556677777777776543
Q ss_pred CCCceEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 696 PRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 696 ~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
++.+.- .+..+ ++|+.|++++|.++...+..+..+++|+.|+|++|.+.. ++......++|+.|.+++|+
T Consensus 136 --l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 136 --LKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred --CCccChhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCC
Confidence 222221 12345 677777887777765555556778888888888777663 33334446677888877765
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=5.7e-18 Score=198.83 Aligned_cols=303 Identities=15% Similarity=0.065 Sum_probs=189.3
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCC----cccchhHhhCC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSL----KSLPSSLLSNL 586 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i----~~lp~~i~~~L 586 (843)
+++|++|.+.++.............+.++++|++|+|++|.+..+|..+.++++|++|+++.... ...+..+ ..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh-hcc
Confidence 45555555544433211112233444555555666665555555555555555555555553211 1222233 455
Q ss_pred ccCcEEeCCCCcCcccchhhhcccccccccccccccCCCC----CCCCCCccccccccccCCCCCCccccCCCCCCceEe
Q 003154 587 LNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHP----GKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQ 662 (843)
Q Consensus 587 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~----~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~ 662 (843)
++|+.|+++++....+|..+..+++|++|++++|.+.... +..+++|++|... .......++.....+++|+.|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEE
Confidence 5566666655555667777888999999998887754332 2367888888754 2212222333346788899999
Q ss_pred eec----------CCcchhhhhhHhhcCCCCCCeEEeecCC-----------CCCCCceEeecc----------------
Q 003154 663 ICG----------DLNYYQSLLSKSLHGLSCLESLKLVNES-----------KMPRLSKIVLFE---------------- 705 (843)
Q Consensus 663 l~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~-----------~~~~L~~L~l~~---------------- 705 (843)
+.+ +.......+......+++|++|++..+. .+++|+.|.+..
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 983 3333333444545668899999986543 378889888841
Q ss_pred ----CCCCCCccEEEEecCC--CCCCCccccc-CCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccc--cc
Q 003154 706 ----NQFPPSLTHLSFSNTD--LIDDPMPTLE-KLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEE--WT 776 (843)
Q Consensus 706 ----~~lp~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~--l~ 776 (843)
..+ ++|+.|+++.|. +++..+..++ .+++|+.|+|++|.+++..+.....++++|++|++++|+ +.. ++
T Consensus 429 ~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 429 RSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp HHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH
T ss_pred HHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH
Confidence 124 789999998764 5544444454 489999999999988765555555678999999999998 543 33
Q ss_pred cccccccccceEeeecCCCCCC-CCccccCCCCCcEEEecCC
Q 003154 777 MGNEAMPKLECLVVNPCAYLKR-LPEHLWCMKNFKKLELWWP 817 (843)
Q Consensus 777 ~~~~~lp~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~ 817 (843)
.....+|+|+.|++++|+.... +......+|.|+...+...
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 3446799999999999994322 2223346788777666654
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.4e-16 Score=170.44 Aligned_cols=190 Identities=22% Similarity=0.260 Sum_probs=92.4
Q ss_pred cCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccc
Q 003154 538 MFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNF 617 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 617 (843)
.+++|+.|+++++.+..+| .+..+++|++|++++|.+..+++ + .++++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3455666666666555554 45556666666666666665555 3 56666666666666555554 3555666666665
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPR 697 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 697 (843)
++|.+.. ++. +..+++|+.|++++ |..... +. +..+++|+.|++++|.
T Consensus 115 ~~n~l~~-----------------------~~~-l~~l~~L~~L~l~~--n~l~~~-~~-l~~l~~L~~L~l~~n~---- 162 (308)
T 1h6u_A 115 TSTQITD-----------------------VTP-LAGLSNLQVLYLDL--NQITNI-SP-LAGLTNLQYLSIGNAQ---- 162 (308)
T ss_dssp TTSCCCC-----------------------CGG-GTTCTTCCEEECCS--SCCCCC-GG-GGGCTTCCEEECCSSC----
T ss_pred CCCCCCC-----------------------chh-hcCCCCCCEEECCC--CccCcC-cc-ccCCCCccEEEccCCc----
Confidence 5544432 111 44445555555554 222111 11 3444445555444332
Q ss_pred CceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 698 LSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 698 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
+..+. .+..+ ++|+.|++++|.+.+.. .+..+++|+.|+|++|.+.+.. ....+++|+.|++++|+
T Consensus 163 l~~~~-~l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 163 VSDLT-PLANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCCG-GGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEE
T ss_pred CCCCh-hhcCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCe
Confidence 11111 12333 45555555555543221 2455555555555555544322 12345555555555544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.2e-16 Score=168.11 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=37.7
Q ss_pred cccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccc-hhhhccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTA-DDIWKLNKLRHLNFG 618 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~ 618 (843)
.|++|+|++|.+..++. .+.++++|++|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34455555554443332 4444455555555555444444432344555555555555444443 234444555555544
Q ss_pred ccc
Q 003154 619 LIT 621 (843)
Q Consensus 619 ~~~ 621 (843)
+|.
T Consensus 109 ~n~ 111 (276)
T 2z62_A 109 ETN 111 (276)
T ss_dssp TSC
T ss_pred CCC
Confidence 443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.3e-16 Score=162.65 Aligned_cols=198 Identities=25% Similarity=0.275 Sum_probs=102.2
Q ss_pred cccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGL 619 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 619 (843)
.++.++++++.++.+|..+. .+|++|++++|.++.+|+..|.++++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777766666665554 4667777777777766654446677777777777766666554 35666777777555
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCc
Q 003154 620 ITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLS 699 (843)
Q Consensus 620 ~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 699 (843)
|.+... .+..+..+++|+.|++++ +......+..+..+++|++|++++|. +.
T Consensus 95 n~l~~~----------------------~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~ 146 (270)
T 2o6q_A 95 NKLQAL----------------------PIGVFDQLVNLAELRLDR--NQLKSLPPRVFDSLTKLTYLSLGYNE----LQ 146 (270)
T ss_dssp SCCCCC----------------------CTTTTTTCSSCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSC----CC
T ss_pred CcCCcC----------------------CHhHcccccCCCEEECCC--CccCeeCHHHhCcCcCCCEEECCCCc----CC
Confidence 554321 011145555666666654 33322222333444444444444322 11
Q ss_pred eEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 700 KIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 700 ~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
.+.. .+..+ ++|+.|++++|.+....+..+..+++|+.|+|++|.+... .......+++|+.|++++|+
T Consensus 147 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 147 SLPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCC
Confidence 1111 12233 4555555555555444444455555555555555544431 11122334555555555544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.9e-16 Score=166.17 Aligned_cols=209 Identities=21% Similarity=0.243 Sum_probs=118.1
Q ss_pred ccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccc
Q 003154 537 KMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHL 615 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 615 (843)
..+++|+.|+++++.+..++ .++.+++|++|++++|.+..++ .+ +++++|++|++++|.+..+|.. +..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45566777777777666554 4666777777777777766654 33 6777777777777766666543 4666777777
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKM 695 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 695 (843)
++++|.+... .+..++.+++|+.|++++ |......+..+.
T Consensus 115 ~L~~n~l~~~----------------------~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~---------------- 154 (272)
T 3rfs_A 115 VLVENQLQSL----------------------PDGVFDKLTNLTYLNLAH--NQLQSLPKGVFD---------------- 154 (272)
T ss_dssp ECTTSCCCCC----------------------CTTTTTTCTTCCEEECCS--SCCCCCCTTTTT----------------
T ss_pred ECCCCcCCcc----------------------CHHHhccCCCCCEEECCC--CccCccCHHHhc----------------
Confidence 7555554321 111145555666666654 322211111122
Q ss_pred CCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc
Q 003154 696 PRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW 775 (843)
Q Consensus 696 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l 775 (843)
.+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+.. +.....+++|++|++++|+.
T Consensus 155 -----------~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~---- 217 (272)
T 3rfs_A 155 -----------KL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPW---- 217 (272)
T ss_dssp -----------TC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB----
T ss_pred -----------cC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCc----
Confidence 23 45555555555555444444566666666666666655422 22234566666666666541
Q ss_pred ccccccccccceEeeecCCCCCCCCccccCCCC
Q 003154 776 TMGNEAMPKLECLVVNPCAYLKRLPEHLWCMKN 808 (843)
Q Consensus 776 ~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~ 808 (843)
.+.+|+|+.|.+..|.....+|..+..++.
T Consensus 218 ---~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 ---DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 134566666666666655566665555443
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=3.1e-17 Score=192.61 Aligned_cols=321 Identities=16% Similarity=0.138 Sum_probs=196.8
Q ss_pred cceEEEEEeeCCCCCc-ccccc---ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC-----Cchhcc
Q 003154 490 KRVRRFCANVNLGELD-SFDRL---DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ-----YPAGIE 560 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~-~~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~-----lp~~i~ 560 (843)
.++++|.+. +..... .+..+ +++|++|.+.++.... ......++.++++|++|+|++|.+.. ++....
T Consensus 105 ~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEE-SCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEee-CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 457788887 443321 22223 6899999998874320 22345666789999999999987542 333334
Q ss_pred CCCCccEEEccCCC--Cc--ccchhHhhCCccCcEEeCCCC-cCcccchhhhccccccccccccccc-------------
Q 003154 561 NLSRLRYLKLNIPS--LK--SLPSSLLSNLLNLYTLDMPSS-YIDHTADDIWKLNKLRHLNFGLITL------------- 622 (843)
Q Consensus 561 ~L~~Lr~L~L~~~~--i~--~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~l------------- 622 (843)
.+++|++|++++|. +. .++.- +.++++|++|++++| .+..+|..+..+++|++|+++.+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHH-HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHH-HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 77899999999886 22 22222 256799999999998 6677888888899999998654421
Q ss_pred -------------CCC---CCC----CCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCC
Q 003154 623 -------------PAH---PGK----YCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLS 682 (843)
Q Consensus 623 -------------~~~---~~~----~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~ 682 (843)
... .++ .+++|++|....+......+...+..+++|+.|++.+ +.....++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~--~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD--YIEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC--ccCHHHHHHHHHhCC
Confidence 000 011 3455555554333311111222355777888888876 333333444444577
Q ss_pred CCCeEEeec---------CC-----------CCCCCceEeeccC------------CCCCCccEEEEe--c----CCCCC
Q 003154 683 CLESLKLVN---------ES-----------KMPRLSKIVLFEN------------QFPPSLTHLSFS--N----TDLID 724 (843)
Q Consensus 683 ~L~~L~l~~---------~~-----------~~~~L~~L~l~~~------------~lp~~L~~L~L~--~----~~l~~ 724 (843)
+|++|++.. +. .+++|+.|.+..+ .+ ++|+.|+++ + +.++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccC
Confidence 888887732 11 3677777765322 24 678888888 2 23332
Q ss_pred CC-----cccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc-ccc-cccccccceEeeecCCCCC
Q 003154 725 DP-----MPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW-TMG-NEAMPKLECLVVNPCAYLK 797 (843)
Q Consensus 725 ~~-----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l-~~~-~~~lp~L~~L~l~~c~~l~ 797 (843)
.. +..+..+++|+.|+|++ .+.+..+......+++|+.|++++|. +... ... ...+|+|+.|++++|+...
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 11 11245678888888864 44433222222237889999998876 3321 111 2568999999999998622
Q ss_pred C-CCccccCCCCCcEEEecCCCH
Q 003154 798 R-LPEHLWCMKNFKKLELWWPQP 819 (843)
Q Consensus 798 ~-lp~~l~~l~~L~~L~l~~~~~ 819 (843)
. ++..+..+++|+.|++++|+.
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhCCCCCEEeeeCCCC
Confidence 1 122445688999999999983
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=5.1e-17 Score=176.28 Aligned_cols=241 Identities=18% Similarity=0.211 Sum_probs=157.4
Q ss_pred HHhccC--CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcc--cchhHhhCCccCcEEeCCCCcCc-ccchhhhc
Q 003154 534 KICKMF--KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKS--LPSSLLSNLLNLYTLDMPSSYID-HTADDIWK 608 (843)
Q Consensus 534 ~~~~~~--~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~ 608 (843)
..+..+ +.+++|+++++.+...+..+..+++|++|++++|.+.. +|..+ .++++|++|++++|.+. ..|..+..
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 445555 78888888888877666667788888888888888763 55555 88888888888888776 45777888
Q ss_pred cccccccccccc-ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCC-CCCe
Q 003154 609 LNKLRHLNFGLI-TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLS-CLES 686 (843)
Q Consensus 609 L~~L~~L~L~~~-~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~-~L~~ 686 (843)
+++|++|++++| .+.. ..++..+..+++|+.|+++++.......++..+..++ +|++
T Consensus 141 ~~~L~~L~L~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CTTCSEEECTTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCCCCEEECCCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 888888886665 2321 0122235667788888887732222223566677777 8888
Q ss_pred EEeecCCCCCCCc--eEeeccCCCCCCccEEEEecCC-CCCCCcccccCCCCCcEEEeeccc-ccCCccccCCCCCCccc
Q 003154 687 LKLVNESKMPRLS--KIVLFENQFPPSLTHLSFSNTD-LIDDPMPTLEKLPYLQVLKLKQNS-YSGRKLACGSDGFPKLK 762 (843)
Q Consensus 687 L~l~~~~~~~~L~--~L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~f~~L~ 762 (843)
|+++++. ..+. .+.-....+ ++|+.|++++|. +++..+..++.+++|+.|++++|. +....+ .....+++|+
T Consensus 200 L~l~~~~--~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~ 275 (336)
T 2ast_B 200 LNLSGYR--KNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLK 275 (336)
T ss_dssp EECCSCG--GGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCC
T ss_pred EEeCCCc--ccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCC
Confidence 8887542 0111 111122345 788888888887 666677788889999999998874 222211 2344588999
Q ss_pred EEEecCcccccccccccccc-cccceEeeecCCCCCCCCcccc
Q 003154 763 VLHLKSMIWLEEWTMGNEAM-PKLECLVVNPCAYLKRLPEHLW 804 (843)
Q Consensus 763 ~L~L~~~~~l~~l~~~~~~l-p~L~~L~l~~c~~l~~lp~~l~ 804 (843)
+|++++| +..- ....+ .+|+.|++++|......|..+.
T Consensus 276 ~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 276 TLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred EEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 9999987 2221 12233 3466667877765555555444
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=5.6e-16 Score=163.02 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=87.3
Q ss_pred EEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhccccccccccccccc
Q 003154 544 VLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLITL 622 (843)
Q Consensus 544 vL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~l 622 (843)
..+..+..+..+|..+. .+|++|++++|.++.+++..|.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45666667778887765 589999999999999988555999999999999999988865 688999999999877776
Q ss_pred CCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeec
Q 003154 623 PAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVN 691 (843)
Q Consensus 623 ~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 691 (843)
... .+..+..+++|+.|++.+ +......+..+..+++|+.|++++
T Consensus 89 ~~~----------------------~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 89 QSL----------------------ALGAFSGLSSLQKLVAVE--TNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CEE----------------------CTTTTTTCTTCCEEECTT--SCCCCSTTCCCTTCTTCCEEECCS
T ss_pred Ccc----------------------ChhhhcCCccccEEECCC--CCccccCchhcccCCCCCEEECcC
Confidence 431 112266777788888775 333322222344455555555543
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.4e-17 Score=178.87 Aligned_cols=245 Identities=17% Similarity=0.165 Sum_probs=179.3
Q ss_pred CCcccEEEcCCCCCCCCchhccCC--CCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc--cchhhhccccccc
Q 003154 539 FKFLRVLDLGSLFLDQYPAGIENL--SRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH--TADDIWKLNKLRH 614 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~~lp~~i~~L--~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~ 614 (843)
-..++.|+++++.+. |..+..+ .++++|++++|.+...++.+ .++++|++|++++|.+.. +|..+..+++|++
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 456899999998876 6667777 89999999999999888887 789999999999998764 7888999999999
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCC
Q 003154 615 LNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESK 694 (843)
Q Consensus 615 L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 694 (843)
|++++|.+.. ..+..++.+++|+.|+++++.......++..+..+++|++|+++++
T Consensus 123 L~L~~~~l~~----------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~-- 178 (336)
T 2ast_B 123 LSLEGLRLSD----------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC-- 178 (336)
T ss_dssp EECTTCBCCH----------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC--
T ss_pred EeCcCcccCH----------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC--
Confidence 9977766432 1222377899999999998322233357777888999999999965
Q ss_pred CCCCceE--eeccCCCCC-CccEEEEecC--CCC-CCCcccccCCCCCcEEEeeccc-ccCCccccCCCCCCcccEEEec
Q 003154 695 MPRLSKI--VLFENQFPP-SLTHLSFSNT--DLI-DDPMPTLEKLPYLQVLKLKQNS-YSGRKLACGSDGFPKLKVLHLK 767 (843)
Q Consensus 695 ~~~L~~L--~l~~~~lp~-~L~~L~L~~~--~l~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~f~~L~~L~L~ 767 (843)
+.+... .-.+..+ + +|++|++++| .++ ...+..++.+++|+.|++++|. +++..+ .....+++|++|+++
T Consensus 179 -~~l~~~~~~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 179 -FDFTEKHVQVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLS 255 (336)
T ss_dssp -TTCCHHHHHHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred -CCcChHHHHHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCC
Confidence 234431 1134456 6 9999999999 454 3345567789999999999888 444333 344668999999999
Q ss_pred Cccccccc-ccccccccccceEeeecCCCCCCCCc-cccCC-CCCcEEEecCCC
Q 003154 768 SMIWLEEW-TMGNEAMPKLECLVVNPCAYLKRLPE-HLWCM-KNFKKLELWWPQ 818 (843)
Q Consensus 768 ~~~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~ 818 (843)
+|..+... ...+..+|+|+.|++++| ++. ++..+ .+|+.|++.+|.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc
Confidence 99744332 224678999999999999 222 23323 235555566544
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.1e-15 Score=161.66 Aligned_cols=200 Identities=23% Similarity=0.243 Sum_probs=133.2
Q ss_pred hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCCCCCCCCCcccc
Q 003154 558 GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENL 636 (843)
Q Consensus 558 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L 636 (843)
.++++++|+.++++++.++.+|..+ .++|++|+|++|.+..+ |..+..+++|++|++++|.+..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------ 69 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------ 69 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------
T ss_pred cccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------
Confidence 4678899999999999999999876 37899999999999888 4668999999999977776543
Q ss_pred ccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEE
Q 003154 637 NFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLS 716 (843)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~ 716 (843)
++. .+.+++|+.|++++ |... .+|..+.. + ++|+.|+
T Consensus 70 -----------~~~-~~~l~~L~~L~Ls~--N~l~-~l~~~~~~---------------------------l-~~L~~L~ 106 (290)
T 1p9a_G 70 -----------LQV-DGTLPVLGTLDLSH--NQLQ-SLPLLGQT---------------------------L-PALTVLD 106 (290)
T ss_dssp -----------EEC-CSCCTTCCEEECCS--SCCS-SCCCCTTT---------------------------C-TTCCEEE
T ss_pred -----------ccC-CCCCCcCCEEECCC--CcCC-cCchhhcc---------------------------C-CCCCEEE
Confidence 111 34667777777775 3222 23333333 3 5556666
Q ss_pred EecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccc-cccccccceEeeecCCC
Q 003154 717 FSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMG-NEAMPKLECLVVNPCAY 795 (843)
Q Consensus 717 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~-~~~lp~L~~L~l~~c~~ 795 (843)
+++|.++...+..++.+++|+.|+|++|.+... ....+..+++|+.|++++|. ++.++.. +..+++|+.|++++|.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~- 183 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS- 183 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-
Confidence 666666555455566666777777766665532 22223446667777776654 5555443 3456777777777665
Q ss_pred CCCCCccccCCCCCcEEEecCCC
Q 003154 796 LKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 796 l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
+..+|..+..+++|+.|++.++|
T Consensus 184 l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCccChhhcccccCCeEEeCCCC
Confidence 45666666666677777777655
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-15 Score=158.03 Aligned_cols=179 Identities=27% Similarity=0.363 Sum_probs=127.8
Q ss_pred CcccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 617 (843)
+.|+.|+|++|.+..+|. .+.++++|++|++++|.++.+|+.+|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 467888888888776664 677888888888888888888877667788888888888888777644 567888888887
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPR 697 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 697 (843)
++|.+... .+..++.+++|+.|++++ +......+..+..+++|+.|++++|.
T Consensus 117 ~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~---- 168 (270)
T 2o6q_A 117 DRNQLKSL----------------------PPRVFDSLTKLTYLSLGY--NELQSLPKGVFDKLTSLKELRLYNNQ---- 168 (270)
T ss_dssp CSSCCCCC----------------------CTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCCccCee----------------------CHHHhCcCcCCCEEECCC--CcCCccCHhHccCCcccceeEecCCc----
Confidence 66665431 112256677777777776 44443333446677788888887653
Q ss_pred CceEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeeccccc
Q 003154 698 LSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYS 747 (843)
Q Consensus 698 L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 747 (843)
+..+.. .+..+ ++|+.|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus 169 l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 169 LKRVPEGAFDKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcEeChhHhccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 332221 23456 88999999999987766667889999999999988764
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=4.1e-16 Score=163.66 Aligned_cols=196 Identities=23% Similarity=0.274 Sum_probs=129.1
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
+++++.|.+.++.... + ..+..+++|++|+|++|.+..++ .++.+++|++|++++|.++.+|+..|+++++|+
T Consensus 40 l~~L~~L~l~~~~i~~----~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS----V--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCC----C--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccc----c--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 6777888777766532 1 23677888888888888887765 788888888888888888888877668888888
Q ss_pred EEeCCCCcCcccchh-hhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcc
Q 003154 591 TLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNY 669 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 669 (843)
+|++++|.+..+|.. +..+++|++|++++|.+.... +..++.+++|+.|++++ |.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~--n~ 168 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP----------------------KGVFDKLTNLTELDLSY--NQ 168 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCS--SC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC----------------------HHHhccCccCCEEECCC--CC
Confidence 888888888888655 678888888887777765421 11145556666666665 33
Q ss_pred hhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccC
Q 003154 670 YQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 670 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
.....+..+..+++|+.|++++|. +..+.- .+..+ ++|+.|++++|.+. +.+|+|+.|+++.|.+.+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~l-~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQ----LKSVPDGVFDRL-TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC----CSCCCTTTTTTC-TTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred cCccCHHHhcCCccCCEEECCCCc----CCccCHHHHhCC-cCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence 333333445556666666666543 222111 12344 66666776666543 235566666666666655
Q ss_pred C
Q 003154 749 R 749 (843)
Q Consensus 749 ~ 749 (843)
.
T Consensus 237 ~ 237 (272)
T 3rfs_A 237 V 237 (272)
T ss_dssp G
T ss_pred c
Confidence 3
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.7e-15 Score=161.95 Aligned_cols=192 Identities=21% Similarity=0.268 Sum_probs=153.6
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
+++|++|.+.++.... +. .+..+++|++|+|++|.+..++. +..+++|++|++++|.++.+| .+ .++++|+
T Consensus 40 l~~L~~L~l~~~~i~~----l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT----IE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCC
T ss_pred cCCcCEEEeeCCCccC----ch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCC
Confidence 7788888888776532 22 47889999999999999998887 999999999999999999886 45 8999999
Q ss_pred EEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcch
Q 003154 591 TLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYY 670 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 670 (843)
+|++++|.+..+|. +..+++|++|++++|.+.. ++. ++.+++|+.|++++ |..
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-----------------------~~~-l~~l~~L~~L~l~~--n~l 163 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-----------------------ISP-LAGLTNLQYLSIGN--AQV 163 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-----------------------CGG-GGGCTTCCEEECCS--SCC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-----------------------Ccc-ccCCCCccEEEccC--CcC
Confidence 99999999999875 8999999999988777654 122 66788899999987 443
Q ss_pred hhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccC
Q 003154 671 QSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 671 ~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
.. ++. +..+++|+.|++++|. +..+. .+..+ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 164 ~~-~~~-l~~l~~L~~L~l~~n~----l~~~~-~l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SD-LTP-LANLSKLTTLKADDNK----ISDIS-PLASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-CGG-GTTCTTCCEEECCSSC----CCCCG-GGGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CC-Chh-hcCCCCCCEEECCCCc----cCcCh-hhcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 33 333 7788999999998764 22222 24566 89999999999986543 48999999999999998865
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=5.2e-16 Score=159.49 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=100.7
Q ss_pred cccEEEcCCCCCCCCch-hccCCCCccEEEccCCC-CcccchhHhhCCccCcEEeCCC-CcCcccch-hhhccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPS-LKSLPSSLLSNLLNLYTLDMPS-SYIDHTAD-DIWKLNKLRHLN 616 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L~ 616 (843)
.|++|++++|.+..+|. .++.+++|++|++++|. ++.+|+..|.++++|++|++++ |.+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888887776665 57778888888888876 7777775557788888888887 67777754 466777888888
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCc---eEeeecCCc-chhhhhhHhhcCCCCCC-eEEeec
Q 003154 617 FGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLG---SLQICGDLN-YYQSLLSKSLHGLSCLE-SLKLVN 691 (843)
Q Consensus 617 L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~-~~~~~l~~~l~~l~~L~-~L~l~~ 691 (843)
+++|.+.. ++. ++.+++|+ .|++++ | ......+..+..+++|+ .|++++
T Consensus 112 l~~n~l~~-----------------------lp~-~~~l~~L~~L~~L~l~~--N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM-----------------------FPD-LTKVYSTDIFFILEITD--NPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS-----------------------CCC-CTTCCBCCSEEEEEEES--CTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc-----------------------ccc-cccccccccccEEECCC--CcchhhcCcccccchhcceeEEEcCC
Confidence 77766543 111 33333443 677765 3 22222223344555555 555543
Q ss_pred CCCCCCCceEeeccCCCCCCccEEEEecCC-CCCCCcccccCC-CCCcEEEeeccccc
Q 003154 692 ESKMPRLSKIVLFENQFPPSLTHLSFSNTD-LIDDPMPTLEKL-PYLQVLKLKQNSYS 747 (843)
Q Consensus 692 ~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~ 747 (843)
|. ++.+.-..... ++|+.|++++|. +....+..++.+ ++|+.|++++|.+.
T Consensus 166 n~----l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 166 NG----FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CC----CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CC----CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 32 22222111122 345555555552 443333344445 55555555544443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=2.3e-17 Score=182.74 Aligned_cols=240 Identities=19% Similarity=0.163 Sum_probs=143.4
Q ss_pred HHhccCCcccEEEcCCCCCCC-----CchhccCCCCccEEEccCCCCc----ccchhH------hhCCccCcEEeCCCCc
Q 003154 534 KICKMFKFLRVLDLGSLFLDQ-----YPAGIENLSRLRYLKLNIPSLK----SLPSSL------LSNLLNLYTLDMPSSY 598 (843)
Q Consensus 534 ~~~~~~~~LrvL~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i------~~~L~~L~~L~L~~~~ 598 (843)
..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ +.++++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 445666777777777776652 3344566777777777775444 233333 2566777777777776
Q ss_pred Ccc-----cchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCC---------CCCceEeee
Q 003154 599 IDH-----TADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRL---------PKLGSLQIC 664 (843)
Q Consensus 599 l~~-----lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~ 664 (843)
+.. +|..+..+++|++|++++|.+..... ..+...+..+ ++|+.|+++
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~------------------~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG------------------AKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH------------------HHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH------------------HHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 655 56667777777777766655432100 0001112222 667777776
Q ss_pred cCCcchh-hhhh---HhhcCCCCCCeEEeecCCCCCCCce-----Eee-ccCCCCCCccEEEEecCCCC----CCCcccc
Q 003154 665 GDLNYYQ-SLLS---KSLHGLSCLESLKLVNESKMPRLSK-----IVL-FENQFPPSLTHLSFSNTDLI----DDPMPTL 730 (843)
Q Consensus 665 ~~~~~~~-~~l~---~~l~~l~~L~~L~l~~~~~~~~L~~-----L~l-~~~~lp~~L~~L~L~~~~l~----~~~~~~l 730 (843)
+ |... ..++ ..+..+++|++|++++|. +.. +.- ++..+ ++|+.|+|++|.++ ..++..+
T Consensus 168 ~--n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 168 R--NRLENGSMKEWAKTFQSHRLLHTVKMVQNG----IRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp S--SCCTGGGHHHHHHHHHHCTTCCEEECCSSC----CCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred C--CCCCcHHHHHHHHHHHhCCCcCEEECcCCC----CCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHH
Confidence 5 3322 2222 455666777777777543 221 100 23345 77888888888764 3455667
Q ss_pred cCCCCCcEEEeecccccCCcc---ccCC--CCCCcccEEEecCcccccc-----ccccc-ccccccceEeeecCCCCCCC
Q 003154 731 EKLPYLQVLKLKQNSYSGRKL---ACGS--DGFPKLKVLHLKSMIWLEE-----WTMGN-EAMPKLECLVVNPCAYLKRL 799 (843)
Q Consensus 731 ~~l~~L~~L~L~~~~~~~~~~---~~~~--~~f~~L~~L~L~~~~~l~~-----l~~~~-~~lp~L~~L~l~~c~~l~~l 799 (843)
..+++|+.|+|++|.+.+... +... ..+++|++|+|++|. +.. ++... .++|+|+.|++++|+.....
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 788888888888887654311 1111 337888888888876 443 55544 55788888888888855443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.1e-15 Score=157.00 Aligned_cols=209 Identities=20% Similarity=0.244 Sum_probs=151.7
Q ss_pred CCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCc-Ccccch-hhhcccccccccccc-cccCCCCC
Q 003154 551 FLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSY-IDHTAD-DIWKLNKLRHLNFGL-ITLPAHPG 627 (843)
Q Consensus 551 ~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~l~~~~~ 627 (843)
.++.+|. +. .+|++|++++|.++.+|+..|+++++|++|++++|. +..+|. .+..+++|++|++++ |.+...
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-- 96 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-- 96 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE--
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--
Confidence 3677887 44 389999999999999998666999999999999996 999976 688999999999876 665431
Q ss_pred CCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCC
Q 003154 628 KYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQ 707 (843)
Q Consensus 628 ~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~ 707 (843)
.+..+..+++|+.|++++ +.... +|. +..++ .
T Consensus 97 --------------------~~~~f~~l~~L~~L~l~~--n~l~~-lp~-~~~l~------------------------~ 128 (239)
T 2xwt_C 97 --------------------DPDALKELPLLKFLGIFN--TGLKM-FPD-LTKVY------------------------S 128 (239)
T ss_dssp --------------------CTTSEECCTTCCEEEEEE--ECCCS-CCC-CTTCC------------------------B
T ss_pred --------------------CHHHhCCCCCCCEEeCCC--CCCcc-ccc-ccccc------------------------c
Confidence 112266778888888876 32221 221 11111 1
Q ss_pred CCCCccEEEEecC-CCCCCCcccccCCCCCc-EEEeecccccCCccccCCCCCCcccEEEecCccccccccc-ccccc-c
Q 003154 708 FPPSLTHLSFSNT-DLIDDPMPTLEKLPYLQ-VLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTM-GNEAM-P 783 (843)
Q Consensus 708 lp~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~-~~~~l-p 783 (843)
+ ..|+.|++++| .+....+..++.+++|+ .|++++|.+.. ....... .++|+.|++++|+.++.++. .+..+ +
T Consensus 129 L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 129 T-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp C-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred c-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcC-CCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 1 22448888888 77655566788999999 99999888762 2222223 37899999999866777754 45678 9
Q ss_pred ccceEeeecCCCCCCCCccccCCCCCcEEEecCCC
Q 003154 784 KLECLVVNPCAYLKRLPEHLWCMKNFKKLELWWPQ 818 (843)
Q Consensus 784 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 818 (843)
+|+.|++++|+ ++.+|.. .+++|+.|++.++.
T Consensus 206 ~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 206 GPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 99999999987 5677765 68899999998875
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1.1e-17 Score=185.34 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=179.6
Q ss_pred cccEEEcCCCCCCCCchhccCCCCccEEEccCCCCccc-----chhHhhCCccCcEEeCCCCcCc----ccchhh-----
Q 003154 541 FLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSL-----PSSLLSNLLNLYTLDMPSSYID----HTADDI----- 606 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~l-----p~~i~~~L~~L~~L~L~~~~l~----~lp~~i----- 606 (843)
.|+...++...+..++..+..+++|++|+|++|.++.. +..+ .++++|++|+|++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 34444444444557888899999999999999998853 2233 68999999999998655 335555
Q ss_pred --hcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhh----hhhHhhcC
Q 003154 607 --WKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQS----LLSKSLHG 680 (843)
Q Consensus 607 --~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~l~~~l~~ 680 (843)
..+++|++|++++|.+... ....++..+..+++|+.|++++ |.... .++..+..
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~------------------~~~~l~~~l~~~~~L~~L~L~~--n~l~~~~~~~l~~~l~~ 148 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPT------------------AQEPLIDFLSKHTPLEHLYLHN--NGLGPQAGAKIARALQE 148 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTT------------------THHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHHHHH
T ss_pred HHhhCCcccEEECCCCcCCHH------------------HHHHHHHHHHhCCCCCEEECcC--CCCCHHHHHHHHHHHHH
Confidence 6889999999888776541 0111333477889999999997 44432 33444444
Q ss_pred C---------CCCCeEEeecCCCC-CCCceEeeccCCCCCCccEEEEecCCCCCC-----CcccccCCCCCcEEEeeccc
Q 003154 681 L---------SCLESLKLVNESKM-PRLSKIVLFENQFPPSLTHLSFSNTDLIDD-----PMPTLEKLPYLQVLKLKQNS 745 (843)
Q Consensus 681 l---------~~L~~L~l~~~~~~-~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~-----~~~~l~~l~~L~~L~L~~~~ 745 (843)
+ ++|++|++++|.-. ..+..+.-.+..+ ++|++|++++|.+... .+..+..+++|+.|+|++|.
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 4 89999999876400 0111111122345 7999999999987632 23378899999999999998
Q ss_pred ccC---CccccCCCCCCcccEEEecCccccccc-----cccc--ccccccceEeeecCCCCC----CCCccc-cCCCCCc
Q 003154 746 YSG---RKLACGSDGFPKLKVLHLKSMIWLEEW-----TMGN--EAMPKLECLVVNPCAYLK----RLPEHL-WCMKNFK 810 (843)
Q Consensus 746 ~~~---~~~~~~~~~f~~L~~L~L~~~~~l~~l-----~~~~--~~lp~L~~L~l~~c~~l~----~lp~~l-~~l~~L~ 810 (843)
+.. ..++.....+++|++|+|++|. +... +..+ +.+++|+.|++++|.... .+|..+ .++++|+
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 752 2233345568999999999987 4432 3333 448999999999998554 388777 6689999
Q ss_pred EEEecCCC
Q 003154 811 KLELWWPQ 818 (843)
Q Consensus 811 ~L~l~~~~ 818 (843)
.|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 99999987
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=5.2e-15 Score=161.31 Aligned_cols=240 Identities=15% Similarity=0.109 Sum_probs=164.1
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcC-cccchh-hhccccccccc-ccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYI-DHTADD-IWKLNKLRHLN-FGL 619 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l-~~lp~~-i~~L~~L~~L~-L~~ 619 (843)
++++.+++.++++|..+. .++++|+|++|.|+.+|+..|.++++|++|+|++|.+ +.+|.. +.++++|..+. +++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 677888888999998773 6899999999999999987669999999999999976 446643 67788877643 334
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCc
Q 003154 620 ITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLS 699 (843)
Q Consensus 620 ~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 699 (843)
|.+.. ..++.+..+++|+.|++++ +......+..+....++..|++.. ..++.
T Consensus 90 N~l~~----------------------l~~~~f~~l~~L~~L~l~~--n~l~~~~~~~~~~~~~l~~l~l~~---~~~i~ 142 (350)
T 4ay9_X 90 NNLLY----------------------INPEAFQNLPNLQYLLISN--TGIKHLPDVHKIHSLQKVLLDIQD---NINIH 142 (350)
T ss_dssp TTCCE----------------------ECTTSBCCCTTCCEEEEEE--ECCSSCCCCTTCCBSSCEEEEEES---CTTCC
T ss_pred Ccccc----------------------cCchhhhhccccccccccc--cccccCCchhhcccchhhhhhhcc---ccccc
Confidence 44432 1233367788888888876 443333333334445666777763 22344
Q ss_pred eEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccc
Q 003154 700 KIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMG 778 (843)
Q Consensus 700 ~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~ 778 (843)
.+.- .+..++..++.|++++|.+.. +++.....++|+.|.+.+++.........+.++++|++|++++|. ++.+|.
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~- 219 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS- 219 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-
T ss_pred cccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-
Confidence 4432 122332567888888888754 344444567788888875444443333445667888888888875 777764
Q ss_pred cccccccceEeeecCCCCCCCCccccCCCCCcEEEecC
Q 003154 779 NEAMPKLECLVVNPCAYLKRLPEHLWCMKNFKKLELWW 816 (843)
Q Consensus 779 ~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 816 (843)
+.+.+|+.|.+.+|..++.+|. +..+++|+.+++.+
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred -hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 4577888888888888888885 77888888888853
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=4.2e-17 Score=191.50 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=152.8
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCC-CCCCCchhccCCCCccEEEccCC-------CCcccchhH
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSL-FLDQYPAGIENLSRLRYLKLNIP-------SLKSLPSSL 582 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~-~~~~lp~~i~~L~~Lr~L~L~~~-------~i~~lp~~i 582 (843)
+++|++|.+.++.. ......+...+.++++|++|+|++| .+..+|..+..+++|++|+++.+ .+..++..+
T Consensus 183 ~~~L~~L~l~~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLAS-EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCS-CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCC-cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 44555555554431 0111122333344555666666555 22334444555555555553332 122233333
Q ss_pred hhCCccCcEE-eCCCCcCcccchhhhcccccccccccccccCCCC----CCCCCCccccccccccCCCCCCccccCCCCC
Q 003154 583 LSNLLNLYTL-DMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHP----GKYCSSLENLNFISALHPRCCTPDILGRLPK 657 (843)
Q Consensus 583 ~~~L~~L~~L-~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~----~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~ 657 (843)
.++++|+.| .+.+.....+|..+..+++|++|++++|.+.... +..+++|++|....+. ....+......+++
T Consensus 262 -~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 -SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-EDAGLEVLASTCKD 339 (594)
T ss_dssp -HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG-HHHHHHHHHHHCTT
T ss_pred -hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc-CHHHHHHHHHhCCC
Confidence 444444444 2222222334444445566666665555433211 1144555555433321 11111121223555
Q ss_pred CceEeeecC--------CcchhhhhhHhhcCCCCCCeEEeecCC-----------CCCCCceEeec--------------
Q 003154 658 LGSLQICGD--------LNYYQSLLSKSLHGLSCLESLKLVNES-----------KMPRLSKIVLF-------------- 704 (843)
Q Consensus 658 L~~L~l~~~--------~~~~~~~l~~~l~~l~~L~~L~l~~~~-----------~~~~L~~L~l~-------------- 704 (843)
|+.|++.++ .......+......+++|+.|.+.++. .+++|+.|.+.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 565555221 011111111222234555555444332 24555555554
Q ss_pred --------cCCCCCCccEEEEecCCCCCCCcccccC-CCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc
Q 003154 705 --------ENQFPPSLTHLSFSNTDLIDDPMPTLEK-LPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW 775 (843)
Q Consensus 705 --------~~~lp~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l 775 (843)
...+ ++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+.....++++|++|++++|+. ...
T Consensus 420 ~~~~~~~l~~~~-~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~ 496 (594)
T 2p1m_B 420 LDIGFGAIVEHC-KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDK 496 (594)
T ss_dssp THHHHHHHHHHC-TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHH
T ss_pred hhhHHHHHHhhC-CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHH
Confidence 2234 7899999977 555555556665 899999999998876554443335589999999999985 432
Q ss_pred --ccccccccccceEeeecCCCCCCCCccc-cCCCCCcEEEecCC
Q 003154 776 --TMGNEAMPKLECLVVNPCAYLKRLPEHL-WCMKNFKKLELWWP 817 (843)
Q Consensus 776 --~~~~~~lp~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~ 817 (843)
......+|+|+.|++++|+........+ ..+|+|+...+.+.
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 2234568999999999998622111122 45677766555543
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=1.5e-16 Score=174.32 Aligned_cols=243 Identities=19% Similarity=0.169 Sum_probs=166.4
Q ss_pred chHHHhccCCcccEEEcCCCCCCCCc-----hhccCCC-CccEEEccCCCCcccchhHhhCC-----ccCcEEeCCCCcC
Q 003154 531 DSMKICKMFKFLRVLDLGSLFLDQYP-----AGIENLS-RLRYLKLNIPSLKSLPSSLLSNL-----LNLYTLDMPSSYI 599 (843)
Q Consensus 531 ~~~~~~~~~~~LrvL~L~~~~~~~lp-----~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L-----~~L~~L~L~~~~l 599 (843)
..+.++...++|++|+|++|.++..+ ..+..++ +|++|++++|.++......+..+ ++|++|+|++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45566677777999999999988665 5778888 89999999999987654433665 9999999999988
Q ss_pred cccc-hhhh----cc-cccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCC-CCCceEeeecCCcchh-
Q 003154 600 DHTA-DDIW----KL-NKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRL-PKLGSLQICGDLNYYQ- 671 (843)
Q Consensus 600 ~~lp-~~i~----~L-~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~- 671 (843)
...+ ..+. .+ ++|++|++++|.+.... ...+...+..+ ++|+.|++++ |...
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~------------------~~~l~~~l~~~~~~L~~L~Ls~--N~l~~ 152 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS------------------SSEFKQAFSNLPASITSLNLRG--NDLGI 152 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC------------------HHHHHHHHTTSCTTCCEEECTT--SCGGG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH------------------HHHHHHHHHhCCCceeEEEccC--CcCCH
Confidence 7654 4344 44 89999998888765410 00111224553 6899999997 5444
Q ss_pred ---hhhhHhhcCCC-CCCeEEeecCCCCCCCceEee-----ccCCCCCCccEEEEecCCCCCCC----cccccC-CCCCc
Q 003154 672 ---SLLSKSLHGLS-CLESLKLVNESKMPRLSKIVL-----FENQFPPSLTHLSFSNTDLIDDP----MPTLEK-LPYLQ 737 (843)
Q Consensus 672 ---~~l~~~l~~l~-~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~----~~~l~~-l~~L~ 737 (843)
..++..+..++ +|++|++++|. +..... .+..+|++|+.|+|++|.+.... +..+.. .++|+
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNN----LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCC----CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 35556666665 89999998764 221111 12233258999999999876533 334444 45899
Q ss_pred EEEeecccccCCcc---ccCCCCCCcccEEEecCcc-------cccccccccccccccceEeeecCCCCC
Q 003154 738 VLKLKQNSYSGRKL---ACGSDGFPKLKVLHLKSMI-------WLEEWTMGNEAMPKLECLVVNPCAYLK 797 (843)
Q Consensus 738 ~L~L~~~~~~~~~~---~~~~~~f~~L~~L~L~~~~-------~l~~l~~~~~~lp~L~~L~l~~c~~l~ 797 (843)
.|+|++|.+.+... ......+++|++|++++|. .+..++.....+++|+.|++++|+.-.
T Consensus 229 ~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 99999888876432 3344668889999999875 122334445678888889998887443
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=3e-15 Score=163.98 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=164.0
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCC-cccEEEcCCCCCCCC-chhccCC-----CCccEEEccCCCCcccchhHh
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFK-FLRVLDLGSLFLDQY-PAGIENL-----SRLRYLKLNIPSLKSLPSSLL 583 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~-~LrvL~L~~~~~~~l-p~~i~~L-----~~Lr~L~L~~~~i~~lp~~i~ 583 (843)
.++|+.|.+.++.............|.+++ +|++|+|++|.++.. +..+..+ ++|++|++++|.++..+...+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 556999999988764211112236788888 999999999998844 5566654 899999999999997665522
Q ss_pred ----hCC-ccCcEEeCCCCcCcccch-hhh----c-ccccccccccccccCCCCCCCCCCccccccccccCCCCCCcccc
Q 003154 584 ----SNL-LNLYTLDMPSSYIDHTAD-DIW----K-LNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDIL 652 (843)
Q Consensus 584 ----~~L-~~L~~L~L~~~~l~~lp~-~i~----~-L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l 652 (843)
..+ ++|++|++++|.+...+. .+. . .++|++|++++|.+... ....+...+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------------------~~~~l~~~l 162 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------------------SSDELIQIL 162 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS------------------CHHHHHHHH
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH------------------HHHHHHHHH
Confidence 445 899999999999987754 333 3 26999999888876531 011122225
Q ss_pred CCCC-CCceEeeecCCcchhhh----hhHhhcCC-CCCCeEEeecCCCCCCCce-----EeeccCCCCCCccEEEEecCC
Q 003154 653 GRLP-KLGSLQICGDLNYYQSL----LSKSLHGL-SCLESLKLVNESKMPRLSK-----IVLFENQFPPSLTHLSFSNTD 721 (843)
Q Consensus 653 ~~l~-~L~~L~l~~~~~~~~~~----l~~~l~~l-~~L~~L~l~~~~~~~~L~~-----L~l~~~~lp~~L~~L~L~~~~ 721 (843)
..++ +|+.|++++ |..... +...+..+ ++|+.|++++|. +.. +.-.+..++++|+.|+|++|.
T Consensus 163 ~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 163 AAIPANVNSLNLRG--NNLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HTSCTTCCEEECTT--SCGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred hcCCccccEeeecC--CCCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 5565 899999998 544433 33455566 599999999765 222 111222333689999999999
Q ss_pred CCCCCc----ccccCCCCCcEEEeecccccCCc------cccCCCCCCcccEEEecCcc
Q 003154 722 LIDDPM----PTLEKLPYLQVLKLKQNSYSGRK------LACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 722 l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~------~~~~~~~f~~L~~L~L~~~~ 770 (843)
+....+ ..+..+++|+.|+|++|.+.... +......+++|+.|++++++
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 876554 34577899999999988744321 12234567889999999987
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.3e-14 Score=148.35 Aligned_cols=176 Identities=24% Similarity=0.302 Sum_probs=105.7
Q ss_pred CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhccccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFG 618 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 618 (843)
...++++++++.+..+|..+. .+|++|++++|.+..+++..|+++++|++|+|++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457788888888888887766 588899999988888877655888899999999888887754 47788888888877
Q ss_pred ccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCC
Q 003154 619 LITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRL 698 (843)
Q Consensus 619 ~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 698 (843)
+|.+... .+..++.+++|+.|++++ |......+..+..+++|+.|++++|. +
T Consensus 92 ~n~l~~~----------------------~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~Ls~N~----l 143 (251)
T 3m19_A 92 NNQLASL----------------------PLGVFDHLTQLDKLYLGG--NQLKSLPSGVFDRLTKLKELRLNTNQ----L 143 (251)
T ss_dssp TSCCCCC----------------------CTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSC----C
T ss_pred CCccccc----------------------ChhHhcccCCCCEEEcCC--CcCCCcChhHhccCCcccEEECcCCc----C
Confidence 7766431 112256677777777776 43332222233444444444444322 1
Q ss_pred ceEee-ccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccc
Q 003154 699 SKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSY 746 (843)
Q Consensus 699 ~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 746 (843)
+.+.- .+..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.+
T Consensus 144 ~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 144 QSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 11111 12223 4444444444444433333444444444444444443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.9e-14 Score=152.31 Aligned_cols=172 Identities=24% Similarity=0.290 Sum_probs=100.9
Q ss_pred ccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccc
Q 003154 537 KMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLN 616 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 616 (843)
..+++|+.|++++|.+..+| .+..+++|++|++++|.++.+++ + +++++|++|++++|.+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 45667777777777777665 36777777777777777777766 4 777777777777777777654 77777777777
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCC
Q 003154 617 FGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMP 696 (843)
Q Consensus 617 L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 696 (843)
+++|.+.. ++. +..+++|+.|++++ |..... ..+..+++|+.|++++|.
T Consensus 119 L~~n~i~~-----------------------~~~-l~~l~~L~~L~l~~--n~l~~~--~~l~~l~~L~~L~L~~N~--- 167 (291)
T 1h6t_A 119 LEHNGISD-----------------------ING-LVHLPQLESLYLGN--NKITDI--TVLSRLTKLDTLSLEDNQ--- 167 (291)
T ss_dssp CTTSCCCC-----------------------CGG-GGGCTTCCEEECCS--SCCCCC--GGGGGCTTCSEEECCSSC---
T ss_pred CCCCcCCC-----------------------Chh-hcCCCCCCEEEccC--CcCCcc--hhhccCCCCCEEEccCCc---
Confidence 66665543 111 55566666666665 322221 334445555555555432
Q ss_pred CCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccC
Q 003154 697 RLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 697 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
+..+. .+..+ ++|+.|++++|.++. .+.+..+++|+.|++++|.+..
T Consensus 168 -l~~~~-~l~~l-~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 -ISDIV-PLAGL-TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CCCCG-GGTTC-TTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEEC
T ss_pred -cccch-hhcCC-CccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcccC
Confidence 11111 12334 555555555555533 1235556666666666555543
No 98
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.55 E-value=6.2e-15 Score=130.76 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHHhcccccCCchhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhh--ccCChhHHHHHHHHH
Q 003154 3 INLGLFSERLRRLLAGEEGTLPDAAKEGIQNLHTEIEVVTSWLRDYDYDLAWLLMQIGAAAED--QIHSTDLKAIMKEIN 80 (843)
Q Consensus 3 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~wl~~l~ 80 (843)
|+++++++|+++++.+| +.++.|++++++.|+++|++|+++|.||+. + +..++.++.|+++||
T Consensus 1 a~v~~ll~KL~~ll~~E-~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~--------------~~~~~~d~~vk~W~~~vr 65 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEE-FKLHKGVKKNIEDLGKELESMNAALIKIGE--------------VPREQLDSQDKLWADEVR 65 (115)
T ss_dssp CTTCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------SCGGGCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHH--------------hccccCCHHHHHHHHHHH
Confidence 67889999999999999 999999999999999999999999999998 5 568899999999999
Q ss_pred HHhhhhhhHHhhhhccccc
Q 003154 81 RFAYESEKVIDTFIIPTIM 99 (843)
Q Consensus 81 ~~~~d~ed~ld~~~~~~~~ 99 (843)
+++||+||++|+|.++...
T Consensus 66 dlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 66 ELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999987653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2.5e-14 Score=166.22 Aligned_cols=174 Identities=25% Similarity=0.289 Sum_probs=114.8
Q ss_pred hccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccc
Q 003154 536 CKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHL 615 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 615 (843)
+..+++|+.|++++|.+..+| .++.|++|++|+|++|.+..+|+ + +++++|+.|+|++|.+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 355677777777777777766 57777788888888777777776 4 77788888888877777765 57777777777
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKM 695 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 695 (843)
+|++|.+.. ++. +..+++|+.|++++ |..... ..+..+++|+.|+|++|.
T Consensus 115 ~Ls~N~l~~-----------------------l~~-l~~l~~L~~L~Ls~--N~l~~l--~~l~~l~~L~~L~Ls~N~-- 164 (605)
T 1m9s_A 115 SLEHNGISD-----------------------ING-LVHLPQLESLYLGN--NKITDI--TVLSRLTKLDTLSLEDNQ-- 164 (605)
T ss_dssp ECTTSCCCC-----------------------CGG-GGGCTTCSEEECCS--SCCCCC--GGGGSCTTCSEEECCSSC--
T ss_pred EecCCCCCC-----------------------Ccc-ccCCCccCEEECCC--CccCCc--hhhcccCCCCEEECcCCc--
Confidence 766666543 122 55666777777765 333222 455666777777776543
Q ss_pred CCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCC
Q 003154 696 PRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGR 749 (843)
Q Consensus 696 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 749 (843)
+..+. .+..+ ++|+.|+|++|.+.+ ++.+..+++|+.|+|++|.+.+.
T Consensus 165 --l~~~~-~l~~l-~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 165 --ISDIV-PLAGL-TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --CCCCG-GGTTC-TTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEECC
T ss_pred --CCCch-hhccC-CCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCcCC
Confidence 22221 13455 677777777777654 24577777777777777766553
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=8.3e-15 Score=156.83 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCcccEEEcCCCCCC-CCchhc--cCCCCccEEEccCCCCcccch----hHhhCCccCcEEeCCCCcCcccc-hhhhccc
Q 003154 539 FKFLRVLDLGSLFLD-QYPAGI--ENLSRLRYLKLNIPSLKSLPS----SLLSNLLNLYTLDMPSSYIDHTA-DDIWKLN 610 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~-~lp~~i--~~L~~Lr~L~L~~~~i~~lp~----~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~ 610 (843)
++.|++|+|++|.+. ..|..+ +.+++|++|++++|.+....+ .-+..+++|++|++++|.+..+| ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 344666666666654 444444 666666666666666653211 11145666666666666665553 3455666
Q ss_pred cccccccccccc
Q 003154 611 KLRHLNFGLITL 622 (843)
Q Consensus 611 ~L~~L~L~~~~l 622 (843)
+|++|++++|.+
T Consensus 170 ~L~~L~Ls~N~l 181 (310)
T 4glp_A 170 ALTSLDLSDNPG 181 (310)
T ss_dssp TCCEEECCSCTT
T ss_pred CCCEEECCCCCC
Confidence 666666555543
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=156.11 Aligned_cols=225 Identities=16% Similarity=0.073 Sum_probs=138.1
Q ss_pred cceEEEEEeeCCCCCc-----ccccc-ccceeEEEeecCCCCCCCCcchHHHh-ccCCcccEEEcCCCCCCC-Cc----h
Q 003154 490 KRVRRFCANVNLGELD-----SFDRL-DSYLHSFLYLSPESDHLNPRDSMKIC-KMFKFLRVLDLGSLFLDQ-YP----A 557 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~-----~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~-~~~~~LrvL~L~~~~~~~-lp----~ 557 (843)
..++++.+. +..... ..... .++|+.|.+.++.... ..+..++ ..+++|++|+|++|.+.. .| .
T Consensus 64 ~~l~~l~l~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVG-AAQVPAQLLVGALRVLAYSRLKELTLEDLKITG---TMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEEC-SCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS---CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred cceeEEEEe-CCcCCHHHHHHHHHhcccCceeEEEeeCCEecc---chhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 346777776 443321 12222 6779999999887641 2222333 889999999999999874 22 3
Q ss_pred hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc---cchh--hhcccccccccccccccCCCCCCCCCC
Q 003154 558 GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH---TADD--IWKLNKLRHLNFGLITLPAHPGKYCSS 632 (843)
Q Consensus 558 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~---lp~~--i~~L~~L~~L~L~~~~l~~~~~~~l~~ 632 (843)
.+..+++|++|++++|.+..+|+..++++++|++|+|++|.+.. ++.. +..+++|++|++++|.+...
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------- 212 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------- 212 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-------
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-------
Confidence 45679999999999999998887666899999999999998754 4333 36788888888777665320
Q ss_pred ccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCc
Q 003154 633 LENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSL 712 (843)
Q Consensus 633 L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L 712 (843)
.. .....++.+++|+.|++++ |......|..+..+. .+ ++|
T Consensus 213 -~~-----------~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~~~------------------------~~-~~L 253 (310)
T 4glp_A 213 -TG-----------VCAALAAAGVQPHSLDLSH--NSLRATVNPSAPRCM------------------------WS-SAL 253 (310)
T ss_dssp -HH-----------HHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSSCC------------------------CC-TTC
T ss_pred -HH-----------HHHHHHhcCCCCCEEECCC--CCCCccchhhHHhcc------------------------Cc-CcC
Confidence 00 0000134556666666665 433333333332221 11 455
Q ss_pred cEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 713 THLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 713 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
++|++++|.++ .+|..+. ++|+.|+|++|.+.+... ...+++|+.|++++|+
T Consensus 254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch---hhhCCCccEEECcCCC
Confidence 55566666554 3344332 566666666666554211 2345666666666654
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=1e-13 Score=143.36 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=55.0
Q ss_pred cccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhh
Q 003154 506 SFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLS 584 (843)
Q Consensus 506 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 584 (843)
++..+.++++.|.+.++... .+....|.++++|++|+|++|.+..++. .+..+++|++|++++|.++.+|+..|.
T Consensus 29 ~p~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 104 (251)
T 3m19_A 29 VPSGIPADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104 (251)
T ss_dssp CCSCCCTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCCCCCCCCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence 33333445555555444432 1223344555555555555555543332 245555555555555555555544445
Q ss_pred CCccCcEEeCCCCcCcccchh-hhccccccccccccccc
Q 003154 585 NLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITL 622 (843)
Q Consensus 585 ~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l 622 (843)
++++|++|+|++|.+..+|.. +..+++|++|++++|.+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence 555555555555555555433 34455555555444443
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=8.1e-14 Score=151.81 Aligned_cols=219 Identities=16% Similarity=0.081 Sum_probs=153.1
Q ss_pred CcccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCc-ccchhHhhCCccCcE-EeCCCCcCcccc-hhhhcccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLK-SLPSSLLSNLLNLYT-LDMPSSYIDHTA-DDIWKLNKLRHL 615 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~-L~L~~~~l~~lp-~~i~~L~~L~~L 615 (843)
++++.|+|++|.++.+|. .+.+|++|++|+|++|.+. .+|...|.++++|+. +.+++|++..+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578999999999998886 5789999999999999875 577766688888775 555667898885 557899999999
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhh-HhhcCC-CCCCeEEeecCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLS-KSLHGL-SCLESLKLVNES 693 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l-~~L~~L~l~~~~ 693 (843)
++++|.+...... ......++..|++.+ +.....++ ..+..+ ..++.|++++|.
T Consensus 110 ~l~~n~l~~~~~~----------------------~~~~~~~l~~l~l~~--~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 110 LISNTGIKHLPDV----------------------HKIHSLQKVLLDIQD--NINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEEECCSSCCCC----------------------TTCCBSSCEEEEEES--CTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccccccccCCch----------------------hhcccchhhhhhhcc--ccccccccccchhhcchhhhhhcccccc
Confidence 9888887642110 012223344555543 21122222 223333 357778887654
Q ss_pred CCCCCceEeeccCCCCCCccEEEEecC-CCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccc
Q 003154 694 KMPRLSKIVLFENQFPPSLTHLSFSNT-DLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWL 772 (843)
Q Consensus 694 ~~~~L~~L~l~~~~lp~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l 772 (843)
++.+.-..... .+|+.|.++++ .+.......++.+++|+.|+|++|.+... + ...|.+|+.|.+.++.++
T Consensus 166 ----i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l--p--~~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 166 ----IQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL--P--SYGLENLKKLRARSTYNL 236 (350)
T ss_dssp ----CCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC--C--SSSCTTCCEEECTTCTTC
T ss_pred ----ccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc--C--hhhhccchHhhhccCCCc
Confidence 55554333334 67888888764 44444445689999999999999887642 2 245889999999999889
Q ss_pred cccccccccccccceEeeec
Q 003154 773 EEWTMGNEAMPKLECLVVNP 792 (843)
Q Consensus 773 ~~l~~~~~~lp~L~~L~l~~ 792 (843)
+.+| .+..+++|+.+++.+
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSC
T ss_pred CcCC-CchhCcChhhCcCCC
Confidence 9988 477899999999865
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=4.4e-14 Score=162.36 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=64.0
Q ss_pred CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGL 619 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 619 (843)
.+|++|+|++|.+..+|..+. ++|++|++++|.|+.+| +.+++|++|++++|.+..+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 389999999999988888774 78999999999999888 347899999999999988888 655 899999877
Q ss_pred cccCC
Q 003154 620 ITLPA 624 (843)
Q Consensus 620 ~~l~~ 624 (843)
|.+.+
T Consensus 130 N~l~~ 134 (571)
T 3cvr_A 130 NQLTM 134 (571)
T ss_dssp SCCSC
T ss_pred CcCCC
Confidence 77654
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=2.6e-14 Score=166.09 Aligned_cols=188 Identities=24% Similarity=0.211 Sum_probs=147.3
Q ss_pred CcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGL 619 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 619 (843)
..+..+.+..+.+..++ .+..|.+|++|++++|.+..+|. + +.|++|+.|+|++|.+..+|. +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-G-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCChH-H-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34555677777766554 36788999999999999999974 5 999999999999999999987 99999999999888
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCc
Q 003154 620 ITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLS 699 (843)
Q Consensus 620 ~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 699 (843)
|.+.. ++. +..+++|+.|++++ |.... + ..+..+++|+.|+|+.|. +.
T Consensus 97 N~l~~-----------------------l~~-l~~l~~L~~L~Ls~--N~l~~-l-~~l~~l~~L~~L~Ls~N~----l~ 144 (605)
T 1m9s_A 97 NKIKD-----------------------LSS-LKDLKKLKSLSLEH--NGISD-I-NGLVHLPQLESLYLGNNK----IT 144 (605)
T ss_dssp SCCCC-----------------------CTT-STTCTTCCEEECTT--SCCCC-C-GGGGGCTTCSEEECCSSC----CC
T ss_pred CCCCC-----------------------Chh-hccCCCCCEEEecC--CCCCC-C-ccccCCCccCEEECCCCc----cC
Confidence 77653 122 78889999999987 44333 2 457788999999998764 33
Q ss_pred eEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcc
Q 003154 700 KIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMI 770 (843)
Q Consensus 700 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~ 770 (843)
.+. .+..+ ++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. .....+++|+.|+|++|+
T Consensus 145 ~l~-~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 145 DIT-VLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCG-GGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred Cch-hhccc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence 331 45567 899999999998865433 88999999999998888753 235668999999999876
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=6.3e-14 Score=140.52 Aligned_cols=161 Identities=20% Similarity=0.281 Sum_probs=100.1
Q ss_pred CcccEEEcCCCCCCCCchh-ccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 617 (843)
++|++|++++|.+..+|.. +..+++|++|++++|.++.+|+..|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4667777777776655543 46677777777777777766666556677777777777776666544 466777777776
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCC
Q 003154 618 GLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPR 697 (843)
Q Consensus 618 ~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 697 (843)
++|.+... .+..+..+++|+.|++++ |...+..+..+..+++|+.|++++|.
T Consensus 108 ~~N~l~~~----------------------~~~~~~~l~~L~~L~l~~--N~l~~~~~~~~~~l~~L~~L~l~~N~---- 159 (208)
T 2o6s_A 108 NTNQLQSL----------------------PDGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRLTSLQYIWLHDNP---- 159 (208)
T ss_dssp CSSCCCCC----------------------CTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred CCCcCccc----------------------CHhHhccCCcCCEEECCC--CccceeCHHHhccCCCccEEEecCCC----
Confidence 66554321 111255666677777765 43333333345566677777776553
Q ss_pred CceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCC
Q 003154 698 LSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPY 735 (843)
Q Consensus 698 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~ 735 (843)
+.+.+ ++|+.|.++.|.+++.+|..++.++.
T Consensus 160 ------~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 ------WDCTC-PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------eecCC-CCHHHHHHHHHhCCceeeccCccccC
Confidence 33344 56677777777777777777776654
No 107
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.48 E-value=3.3e-13 Score=150.53 Aligned_cols=281 Identities=13% Similarity=0.047 Sum_probs=165.4
Q ss_pred CCceecchHHHHHHHHHH-Hc---C-CCCceEEEE--EcCCCChHHHHHHHHhcCccccc-----cCC-eeEEEEeCCCC
Q 003154 174 DNDIVGLDDKMEELLDHL-IE---G-PPQLSVVAV--LDSVGLDKTAFAAEAYNSNYVKH-----YFD-CKAWVPVSILY 240 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L-~~---~-~~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~~-----~F~-~~~wv~~s~~~ 240 (843)
+..++||+.+++++.+++ .. + ......+.| +|++|+||||||+.+++. ... .|+ .++|+.+....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCC
Confidence 367999999999999998 42 2 022445555 999999999999999984 332 133 36788777777
Q ss_pred ChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCc--------hhhHHHHHhcCC-C-
Q 003154 241 QPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTN--------DVWEFIQEILPD-N- 308 (843)
Q Consensus 241 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~--------~~~~~l~~~~~~-~- 308 (843)
+...++..++.+++.... ....+..++. ..+.+.+. +++++|||||+|.. +.+..+...+.. .
T Consensus 99 ~~~~~~~~l~~~l~~~~~---~~~~~~~~~~--~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQ---VRGAPALDIL--KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp SHHHHHHHHHHHHTCCCC---CTTCCHHHHH--HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCCC---CCCCCHHHHH--HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 889999999999976422 1123345555 66777665 78999999999763 233333332221 1
Q ss_pred -C--CCcEEEEEecchhhh-------h----c----c--ccCC------------C--CcCCcccccccchhhhhcC---
Q 003154 309 -L--NGSRVLTTVSNIEIL-------T----S----F--QLEN------------G--QHIRLDLVPAGGPLRVTYE--- 351 (843)
Q Consensus 309 -~--~gs~iiiTtR~~~v~-------~----~----~--~~~~------------~--~~~~~~~~~~~~~i~~~c~--- 351 (843)
+ ....||+||+...+. . . + .|.. . .....--.+....|++.|+
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 2 345588888765432 1 0 1 2200 0 0000111345678899999
Q ss_pred ---CchhHHHHHhhhhH-------------HHHHHhhhccc-ccchhhccCCCchhhhhHHhhhccCC--CCCccChhhH
Q 003154 352 ---GWPFLILYHGSLSL-------------EENREKILAEP-FGDQVLTYSKFPLYFKLCGLYLSVFP--LHSEISARQL 412 (843)
Q Consensus 352 ---GlPLai~~~g~~L~-------------~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~L 412 (843)
|.|..+..+..... ..+........ ...+.-++..||.+.+.++..++.+. .+..++..++
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~ 333 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLL 333 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 99976554443221 11111111111 24566678899999999999888654 2335555555
Q ss_pred HHHHH--H---cCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCcEeEEEcCcch
Q 003154 413 YQLWI--A---EGFVRDNSEATAEEILEELIDRGFIQVKRRKASGTIKTCSFSSLV 463 (843)
Q Consensus 413 i~~wi--a---eg~i~~~~~~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~mhdlv 463 (843)
...+. + .|. .+........+++.|++.+++.....+ .|+...|++|++.
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~~-~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 334 RQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPSG-RGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC--------CCEEEEC
T ss_pred HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeeccc-CCCCCceeEEEeC
Confidence 54442 2 121 111345677899999999999876432 2222345555554
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2e-13 Score=136.79 Aligned_cols=180 Identities=22% Similarity=0.265 Sum_probs=114.8
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLIT 621 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 621 (843)
+.++.+++.+..+|..+ ..+|++|++++|.++.+|+..|+++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 57788888888888665 45899999999999999887668999999999999999888765 5788888888877666
Q ss_pred cCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceE
Q 003154 622 LPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKI 701 (843)
Q Consensus 622 l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L 701 (843)
+... .+..++.+++|+.|++++ |......+..
T Consensus 88 l~~~----------------------~~~~~~~l~~L~~L~L~~--N~l~~~~~~~------------------------ 119 (208)
T 2o6s_A 88 LQSL----------------------PNGVFDKLTQLKELALNT--NQLQSLPDGV------------------------ 119 (208)
T ss_dssp CCCC----------------------CTTTTTTCTTCCEEECCS--SCCCCCCTTT------------------------
T ss_pred CCcc----------------------CHhHhcCccCCCEEEcCC--CcCcccCHhH------------------------
Confidence 5431 111245566666666654 2221111111
Q ss_pred eeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccccccc
Q 003154 702 VLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMGNEA 781 (843)
Q Consensus 702 ~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~~~~ 781 (843)
+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+ .+++|+.|.++.+.....+|...+.
T Consensus 120 ---~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 120 ---FDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp ---TTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ---hccC-CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 1223 555566666665554444456667777777776664432 2455666666555444455544444
Q ss_pred ccc
Q 003154 782 MPK 784 (843)
Q Consensus 782 lp~ 784 (843)
++.
T Consensus 188 l~~ 190 (208)
T 2o6s_A 188 VAP 190 (208)
T ss_dssp BCT
T ss_pred ccC
Confidence 443
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.9e-13 Score=144.67 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=136.1
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
+++++.|.+.++.... + ..+..+++|++|+|++|.+..++. ++++++|++|++++|.++.+|. + +++++|+
T Consensus 45 l~~L~~L~l~~~~i~~----~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred cCcccEEEccCCCccc----C--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCC
Confidence 7788888888776542 2 237889999999999999998887 9999999999999999998776 5 9999999
Q ss_pred EEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcch
Q 003154 591 TLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYY 670 (843)
Q Consensus 591 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 670 (843)
+|++++|.+..++ .+..+++|++|++++|.+.. +.. ++.+++|+.|++++ |..
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-----------------------~~~-l~~l~~L~~L~L~~--N~l 168 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-----------------------ITV-LSRLTKLDTLSLED--NQI 168 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-----------------------CGG-GGGCTTCSEEECCS--SCC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-----------------------chh-hccCCCCCEEEccC--Ccc
Confidence 9999999998884 68899999999988877654 122 77788899999987 544
Q ss_pred hhhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCC
Q 003154 671 QSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDP 726 (843)
Q Consensus 671 ~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 726 (843)
....+ +..+++|+.|++++|. +..+. .+..+ ++|+.|++++|.+....
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~----i~~l~-~l~~l-~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNH----ISDLR-ALAGL-KNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSC----CCBCG-GGTTC-TTCSEEEEEEEEEECCC
T ss_pred ccchh--hcCCCccCEEECCCCc----CCCCh-hhccC-CCCCEEECcCCcccCCc
Confidence 43333 7788999999998764 33332 35567 89999999999876543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=6.7e-14 Score=145.77 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=84.4
Q ss_pred cccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccccccccc
Q 003154 541 FLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLI 620 (843)
Q Consensus 541 ~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 620 (843)
.+..++++++.+..++ .+..+.+|++|++++|.++.+| .+ +.+++|++|++++|.+..+|. +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 3444455555555444 3445555555555555555554 33 555555555555555555544 555555555554444
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCce
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSK 700 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 700 (843)
.+... +. +.. ++|+.|++++ |.... + ..+..+++|+.|++++|. ++.
T Consensus 96 ~l~~l-----------------------~~-~~~-~~L~~L~L~~--N~l~~-~-~~l~~l~~L~~L~Ls~N~----i~~ 142 (263)
T 1xeu_A 96 RLKNL-----------------------NG-IPS-ACLSRLFLDN--NELRD-T-DSLIHLKNLEILSIRNNK----LKS 142 (263)
T ss_dssp CCSCC-----------------------TT-CCC-SSCCEEECCS--SCCSB-S-GGGTTCTTCCEEECTTSC----CCB
T ss_pred ccCCc-----------------------Cc-ccc-CcccEEEccC--CccCC-C-hhhcCcccccEEECCCCc----CCC
Confidence 44320 00 111 4444444443 22211 1 124444555555554432 222
Q ss_pred EeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCC
Q 003154 701 IVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGR 749 (843)
Q Consensus 701 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 749 (843)
+. .+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 143 ~~-~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 IV-MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CG-GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ch-HHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 21 23344 6677777777766543 5667777778888777766543
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=3e-14 Score=169.75 Aligned_cols=163 Identities=21% Similarity=0.145 Sum_probs=102.2
Q ss_pred cceEEEEEeeCCCCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccE
Q 003154 490 KRVRRFCANVNLGELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRY 567 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~ 567 (843)
..++++++. .+.....+... ...|+.+.+.......-....+...|..++.|++|+|++|.+..+|..+.++++|++
T Consensus 173 ~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 446667765 33333233222 444454444332221101224567789999999999999999999999999999999
Q ss_pred EEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCC
Q 003154 568 LKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCC 647 (843)
Q Consensus 568 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~ 647 (843)
|+|++|.|+.+|..+ ++|++|++|+|++|.|..+|..++.|++|++|+|++|.+..
T Consensus 252 L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~----------------------- 307 (727)
T 4b8c_D 252 LYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT----------------------- 307 (727)
T ss_dssp CBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC-----------------------
T ss_pred EEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc-----------------------
Confidence 999999999999998 99999999999999999999999999999999988887642
Q ss_pred CccccCCCCCCceEeeecCCcchhhhhhHhhc
Q 003154 648 TPDILGRLPKLGSLQICGDLNYYQSLLSKSLH 679 (843)
Q Consensus 648 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~ 679 (843)
++..++.+++|+.|++++ |...+.+|..+.
T Consensus 308 lp~~~~~l~~L~~L~L~~--N~l~~~~p~~~~ 337 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEG--NPLEKQFLKILT 337 (727)
T ss_dssp CCSSTTSCTTCCCEECTT--SCCCSHHHHHHH
T ss_pred cChhhhcCCCccEEeCCC--CccCCCChHHHh
Confidence 233378888999999987 666666665553
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=6e-13 Score=132.09 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=75.2
Q ss_pred ccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc-cchhhhcccccccc
Q 003154 537 KMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH-TADDIWKLNKLRHL 615 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 615 (843)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+ ..+++|++|++++|.+.. .|..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~-------- 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLS-------- 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCT--------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCccCcccChhhc--------
Confidence 33445555555555555555 4555555555555555444443 22 455555555555554443 233344
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKM 695 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 695 (843)
.+++|+.|++++ +......+..+..+++|+.|++++|.
T Consensus 110 --------------------------------------~l~~L~~L~Ls~--n~i~~~~~~~l~~l~~L~~L~L~~n~-- 147 (197)
T 4ezg_A 110 --------------------------------------GLTSLTLLDISH--SAHDDSILTKINTLPKVNSIDLSYNG-- 147 (197)
T ss_dssp --------------------------------------TCTTCCEEECCS--SBCBGGGHHHHTTCSSCCEEECCSCT--
T ss_pred --------------------------------------CCCCCCEEEecC--CccCcHhHHHHhhCCCCCEEEccCCC--
Confidence 444555555544 33333344445555555555554321
Q ss_pred CCCceEeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeeccccc
Q 003154 696 PRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYS 747 (843)
Q Consensus 696 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 747 (843)
.+..+. .+..+ ++|+.|++++|.+.+ .+.+..+++|+.|++++|.+.
T Consensus 148 -~i~~~~-~l~~l-~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 148 -AITDIM-PLKTL-PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -BCCCCG-GGGGC-SSCCEEECTTBCCCC--CTTGGGCSSCCEEEECBC---
T ss_pred -CccccH-hhcCC-CCCCEEECCCCCCcC--hHHhccCCCCCEEEeeCcccC
Confidence 111111 23344 566666666666543 225666777777777766554
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.7e-14 Score=166.67 Aligned_cols=201 Identities=18% Similarity=0.195 Sum_probs=131.8
Q ss_pred cCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCc--------------Ccccchhhhccccccccc-ccccccCC
Q 003154 560 ENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSY--------------IDHTADDIWKLNKLRHLN-FGLITLPA 624 (843)
Q Consensus 560 ~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~--------------l~~lp~~i~~L~~L~~L~-L~~~~l~~ 624 (843)
..+++|+.|+|++|.++.+|+++ ++|++|+.|++++|. ....|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45667777777777777777777 777777777776552 122244455555555555 222221
Q ss_pred CCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEeec
Q 003154 625 HPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVLF 704 (843)
Q Consensus 625 ~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~ 704 (843)
++|..+.+.+ +.. ..++. ..|+.|++++|. |+.+. .
T Consensus 423 -------------------------------~~L~~l~l~~--n~i-~~l~~-----~~L~~L~Ls~n~----l~~lp-~ 458 (567)
T 1dce_A 423 -------------------------------DDLRSKFLLE--NSV-LKMEY-----ADVRVLHLAHKD----LTVLC-H 458 (567)
T ss_dssp -------------------------------HHHHHHHHHH--HHH-HHHHH-----TTCSEEECTTSC----CSSCC-C
T ss_pred -------------------------------chhhhhhhhc--ccc-cccCc-----cCceEEEecCCC----CCCCc-C
Confidence 1122222222 111 11111 247778887654 33332 2
Q ss_pred cCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccc--ccccccc
Q 003154 705 ENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEW--TMGNEAM 782 (843)
Q Consensus 705 ~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l--~~~~~~l 782 (843)
+..+ ++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+.+ ++ ....+++|++|+|++|. +..+ |..++.+
T Consensus 459 ~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l 532 (567)
T 1dce_A 459 LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSC 532 (567)
T ss_dssp GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGC
T ss_pred cccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcC
Confidence 4566 78999999999886 677889999999999999888876 33 56678999999999876 6666 7778889
Q ss_pred cccceEeeecCCCCCCCCcc----ccCCCCCcEEEe
Q 003154 783 PKLECLVVNPCAYLKRLPEH----LWCMKNFKKLEL 814 (843)
Q Consensus 783 p~L~~L~l~~c~~l~~lp~~----l~~l~~L~~L~l 814 (843)
++|+.|++++|+. ..+|.. +..+|+|+.|++
T Consensus 533 ~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 9999999999984 444442 334788888864
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.4e-12 Score=149.93 Aligned_cols=179 Identities=18% Similarity=0.177 Sum_probs=121.1
Q ss_pred cceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcE
Q 003154 512 SYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYT 591 (843)
Q Consensus 512 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 591 (843)
.+++.|.+.++.... ++..+ +++|++|+|++|.+..+| +.+++|++|++++|.++.+|. + ++ +|++
T Consensus 59 ~~L~~L~Ls~n~L~~----lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS----LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L-PA--SLKH 124 (571)
T ss_dssp TTCSEEECCSSCCSC----CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C-CT--TCCE
T ss_pred CCccEEEeCCCCCCc----cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h-hc--CCCE
Confidence 367777777665532 22222 367999999999999888 567899999999999999988 5 65 9999
Q ss_pred EeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchh
Q 003154 592 LDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQ 671 (843)
Q Consensus 592 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 671 (843)
|+|++|.+..+|. .+++|++|++++|.+... +. .+++|+.|++++ |...
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-----------------------p~---~l~~L~~L~Ls~--N~L~ 173 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQLTML-----------------------PE---LPTSLEVLSVRN--NQLT 173 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-----------------------CC---CCTTCCEEECCS--SCCS
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCccCcC-----------------------CC---cCCCcCEEECCC--CCCC
Confidence 9999999988887 688999999888876541 11 345677777765 4332
Q ss_pred hhhhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCc-------cEEEEecCCCCCCCcccccCCCCCcEEEeecc
Q 003154 672 SLLSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSL-------THLSFSNTDLIDDPMPTLEKLPYLQVLKLKQN 744 (843)
Q Consensus 672 ~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 744 (843)
. +|. +. ++|+.|++++|. ++.+.- ++.+| +.|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~----L~~lp~----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNL----LESLPA----VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSC----CSSCCC----CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred C-cch-hh--CCCCEEECcCCC----CCchhh----HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 2 443 33 667777776543 222110 11234 77777777765 45666666777777777777
Q ss_pred cccC
Q 003154 745 SYSG 748 (843)
Q Consensus 745 ~~~~ 748 (843)
.+.+
T Consensus 241 ~l~~ 244 (571)
T 3cvr_A 241 PLSS 244 (571)
T ss_dssp SCCH
T ss_pred cCCC
Confidence 6654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=4.4e-13 Score=133.10 Aligned_cols=146 Identities=20% Similarity=0.197 Sum_probs=114.0
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcc-cchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKS-LPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 589 (843)
+++++.|.+.++.... ++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..+ +++++|
T Consensus 43 l~~L~~L~l~~n~i~~----l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTD----LT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSC----CT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTC
T ss_pred cCCccEEeccCCCccC----hH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCC
Confidence 7899999999887642 22 4788999999999999877665 79999999999999999986 56666 999999
Q ss_pred cEEeCCCCcCcc-cchhhhcccccccccccccc-cCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCC
Q 003154 590 YTLDMPSSYIDH-TADDIWKLNKLRHLNFGLIT-LPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDL 667 (843)
Q Consensus 590 ~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~-l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 667 (843)
++|++++|.+.. .|..+..+++|++|++++|. +.. ++. +..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----------------------~~~-l~~l~~L~~L~l~~-- 168 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----------------------IMP-LKTLPELKSLNIQF-- 168 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----------------------CGG-GGGCSSCCEEECTT--
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----------------------cHh-hcCCCCCCEEECCC--
Confidence 999999999876 57889999999999977776 432 122 77788889998886
Q ss_pred cchhhhhhHhhcCCCCCCeEEeecC
Q 003154 668 NYYQSLLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 668 ~~~~~~l~~~l~~l~~L~~L~l~~~ 692 (843)
|.... ++ .+..+++|+.|++++|
T Consensus 169 n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 169 DGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred CCCcC-hH-HhccCCCCCEEEeeCc
Confidence 43322 22 4555666666666543
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=5.8e-13 Score=145.64 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=110.4
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhh-CCccCcEEeCCCCcCcccch-hhhccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLS-NLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLI 620 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 620 (843)
++++++++.+..+|..+. ..+++|+|++|.|+.+++..|. ++++|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 567777777777776554 3577777777777777776545 77777777777777777753 4777777777776666
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCce
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSK 700 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 700 (843)
.+... .+..+..+++|+.|++++ |......+..+..+++|+.|+|++|. +..
T Consensus 99 ~l~~~----------------------~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~L~~N~----l~~ 150 (361)
T 2xot_A 99 HLHTL----------------------DEFLFSDLQALEVLLLYN--NHIVVVDRNAFEDMAQLQKLYLSQNQ----ISR 150 (361)
T ss_dssp CCCEE----------------------CTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSC----CCS
T ss_pred cCCcC----------------------CHHHhCCCcCCCEEECCC--CcccEECHHHhCCcccCCEEECCCCc----CCe
Confidence 65321 111255666777777765 44444445556666777777776543 333
Q ss_pred Eeecc----CCCCCCccEEEEecCCCCCCCcccccCCCC--CcEEEeeccccc
Q 003154 701 IVLFE----NQFPPSLTHLSFSNTDLIDDPMPTLEKLPY--LQVLKLKQNSYS 747 (843)
Q Consensus 701 L~l~~----~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~~ 747 (843)
+.... ..+ ++|+.|+|++|.+....+..+..++. |+.|+|.+|.+.
T Consensus 151 l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 151 FPVELIKDGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCGGGTC----C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred eCHHHhcCcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 22211 345 77778888887776555556666776 377777776553
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=4.4e-15 Score=171.50 Aligned_cols=178 Identities=22% Similarity=0.262 Sum_probs=101.0
Q ss_pred ccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCC-------------CcccchhHhhCCccCcEEe-CCCCcCccc
Q 003154 537 KMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPS-------------LKSLPSSLLSNLLNLYTLD-MPSSYIDHT 602 (843)
Q Consensus 537 ~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~-------------i~~lp~~i~~~L~~L~~L~-L~~~~l~~l 602 (843)
..++.|+.|+|++|.++.+|..|++|.+|+.|++++|. +...++..++++++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56789999999999999999999999999999987653 3334444449999999999 665544433
Q ss_pred ch------hhhcc--cccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhh
Q 003154 603 AD------DIWKL--NKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLL 674 (843)
Q Consensus 603 p~------~i~~L--~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 674 (843)
+. .+..+ ..|+.|++++|.+.. ++. ++.+++|+.|++++ |... .+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----------------------lp~-~~~l~~L~~L~Ls~--N~l~-~l 478 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-----------------------LCH-LEQLLLVTHLDLSH--NRLR-AL 478 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----------------------CCC-GGGGTTCCEEECCS--SCCC-CC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-----------------------CcC-ccccccCcEeecCc--cccc-cc
Confidence 32 11111 135555544444322 233 55566666666665 3333 44
Q ss_pred hHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCC-cccccCCCCCcEEEeeccccc
Q 003154 675 SKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDP-MPTLEKLPYLQVLKLKQNSYS 747 (843)
Q Consensus 675 ~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~ 747 (843)
|..++.+++|+.|++++|. ++.+. .++.+ ++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+.
T Consensus 479 p~~~~~l~~L~~L~Ls~N~----l~~lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNA----LENVD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CGGGGGCTTCCEEECCSSC----CCCCG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred chhhhcCCCCCEEECCCCC----CCCCc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 5555555555555554432 22222 23333 44444444444443333 444444444444444444443
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=2.4e-12 Score=130.15 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=102.1
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLIT 621 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 621 (843)
+.++++++.++.+|..+. .+|++|++++|.|+.+|+..|.++++|++|+|++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678888888888887765 6899999999999988886558899999999999988877 6678888888888877776
Q ss_pred cCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceE
Q 003154 622 LPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKI 701 (843)
Q Consensus 622 l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L 701 (843)
+... .+..+..+++|+.|++++ |......+..+
T Consensus 92 l~~l----------------------~~~~f~~l~~L~~L~L~~--N~l~~~~~~~~----------------------- 124 (220)
T 2v9t_B 92 ITEL----------------------PKSLFEGLFSLQLLLLNA--NKINCLRVDAF----------------------- 124 (220)
T ss_dssp CCCC----------------------CTTTTTTCTTCCEEECCS--SCCCCCCTTTT-----------------------
T ss_pred CCcc----------------------CHhHccCCCCCCEEECCC--CCCCEeCHHHc-----------------------
Confidence 5431 111145556666666665 32222212222
Q ss_pred eeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeeccccc
Q 003154 702 VLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYS 747 (843)
Q Consensus 702 ~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 747 (843)
..+ ++|+.|+|++|.+....+..+..+++|+.|+|++|.+.
T Consensus 125 ----~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 125 ----QDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ----CCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 223 45555555666655555555666777777777766543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.8e-12 Score=134.88 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=118.0
Q ss_pred HhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccccc
Q 003154 535 ICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRH 614 (843)
Q Consensus 535 ~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 614 (843)
.+..+++|++|++++|.+..+| .++.+++|++|++++|.++.+|+ + +++++|++|++++|.+..+|.... ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 4677889999999999988888 78889999999999999998888 5 899999999999999888876433 88999
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCC
Q 003154 615 LNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESK 694 (843)
Q Consensus 615 L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 694 (843)
|++++|.+.. ++. ++.+++|+.|++++ |...+ ++ .+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~-----------------------~~~-l~~l~~L~~L~Ls~--N~i~~-~~-~l~~l~~L~~L~L~~N~- 161 (263)
T 1xeu_A 111 LFLDNNELRD-----------------------TDS-LIHLKNLEILSIRN--NKLKS-IV-MLGFLSKLEVLDLHGNE- 161 (263)
T ss_dssp EECCSSCCSB-----------------------SGG-GTTCTTCCEEECTT--SCCCB-CG-GGGGCTTCCEEECTTSC-
T ss_pred EEccCCccCC-----------------------Chh-hcCcccccEEECCC--CcCCC-Ch-HHccCCCCCEEECCCCc-
Confidence 9977777643 122 77788888888886 44333 23 57778889999888764
Q ss_pred CCCCceEeeccCCCCCCccEEEEecCCCCCCC
Q 003154 695 MPRLSKIVLFENQFPPSLTHLSFSNTDLIDDP 726 (843)
Q Consensus 695 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 726 (843)
+..+ -.+..+ ++|+.|++++|.+.+..
T Consensus 162 ---i~~~-~~l~~l-~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 162 ---ITNT-GGLTRL-KKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ---CCBC-TTSTTC-CCCCEEEEEEEEEECCC
T ss_pred ---Ccch-HHhccC-CCCCEEeCCCCcccCCc
Confidence 3322 244566 88999999999876543
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=3.2e-12 Score=129.17 Aligned_cols=152 Identities=16% Similarity=0.212 Sum_probs=103.1
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccc-hhHhhCCccCcEEeCCCCcCcccch-hhhccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLP-SSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLI 620 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 620 (843)
++++++++.++.+|..+.. .+++|++++|.++.++ ...|.++++|++|+|++|.+..++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5889999998888877653 5689999999999874 3444889999999999998888865 6888888888887777
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCce
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSK 700 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 700 (843)
.+... .+..+..+++|+.|++++ |......+..+
T Consensus 92 ~l~~~----------------------~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~---------------------- 125 (220)
T 2v70_A 92 RLENV----------------------QHKMFKGLESLKTLMLRS--NRITCVGNDSF---------------------- 125 (220)
T ss_dssp CCCCC----------------------CGGGGTTCSSCCEEECTT--SCCCCBCTTSS----------------------
T ss_pred ccCcc----------------------CHhHhcCCcCCCEEECCC--CcCCeECHhHc----------------------
Confidence 66431 122255566666666665 32222222222
Q ss_pred EeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccC
Q 003154 701 IVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSG 748 (843)
Q Consensus 701 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 748 (843)
..+ ++|+.|+|++|.+++..+..+..+++|+.|+|++|.+..
T Consensus 126 -----~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 126 -----IGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -----TTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred -----CCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 233 556666666666665556667777777777777766543
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=5.6e-12 Score=128.26 Aligned_cols=144 Identities=21% Similarity=0.252 Sum_probs=114.9
Q ss_pred EEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCCCccEEEccCC
Q 003154 495 FCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNIP 573 (843)
Q Consensus 495 Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~ 573 (843)
+... +.....++..+.++++.|.+.++... .+.+..|..+++|++|+|++|.+..+|.. +..+++|++|+|++|
T Consensus 24 v~c~-~~~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 24 VDCR-SKRHASVPAGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EECT-TSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEcc-CCCcCccCCCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3343 34444456555889999999888764 34456788999999999999999988754 689999999999999
Q ss_pred CCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccC
Q 003154 574 SLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILG 653 (843)
Q Consensus 574 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~ 653 (843)
.++.+|+..|..+++|++|+|++|.+..+|..+..+++|++|++++|.+... .+..+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~ 156 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI----------------------PHGAFD 156 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC----------------------CTTTTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc----------------------CHHHHh
Confidence 9999998877899999999999999999999999999999999888876541 112266
Q ss_pred CCCCCceEeeec
Q 003154 654 RLPKLGSLQICG 665 (843)
Q Consensus 654 ~l~~L~~L~l~~ 665 (843)
.+++|+.|++.+
T Consensus 157 ~l~~L~~L~l~~ 168 (229)
T 3e6j_A 157 RLSSLTHAYLFG 168 (229)
T ss_dssp TCTTCCEEECTT
T ss_pred CCCCCCEEEeeC
Confidence 677788888776
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=4.3e-12 Score=128.21 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=107.0
Q ss_pred CCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCccc
Q 003154 500 NLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSL 578 (843)
Q Consensus 500 ~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~l 578 (843)
+.....++..+.++++.|.+.++... .++...|..+++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+
T Consensus 20 ~~~l~~iP~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 20 GKGLTEIPTNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TSCCSSCCSSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCcCcCCCccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 33344455555678888888887763 35556788889999999999988855 67888999999999999999999
Q ss_pred chhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCC
Q 003154 579 PSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPK 657 (843)
Q Consensus 579 p~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~ 657 (843)
|+.+|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+... .+..+..+++
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~l~~ 153 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI----------------------AKGTFSPLRA 153 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----------------------CTTTTTTCTT
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE----------------------CHHHHhCCCC
Confidence 888778899999999999988887 45688889999999888776542 1122566777
Q ss_pred CceEeeec
Q 003154 658 LGSLQICG 665 (843)
Q Consensus 658 L~~L~l~~ 665 (843)
|+.|++.+
T Consensus 154 L~~L~L~~ 161 (220)
T 2v9t_B 154 IQTMHLAQ 161 (220)
T ss_dssp CCEEECCS
T ss_pred CCEEEeCC
Confidence 77777775
No 123
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.31 E-value=1.5e-11 Score=133.81 Aligned_cols=267 Identities=12% Similarity=0.072 Sum_probs=156.6
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC------ChHHHH
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY------QPDSLL 246 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~~~~~ 246 (843)
....++||+++++++.+++..+ +++.|+|++|+|||||++++++. . + .+|+.+.... +...+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHH
Confidence 3467999999999999998763 68999999999999999999973 2 2 6777765432 566667
Q ss_pred HHHHHHhCCC---------------CCCccccccchHHHHHHHHHHHHhCC-CeEEEEEcCCCCchh---------hHHH
Q 003154 247 DNIIKFLMPS---------------SKLSEVMEDRDYEMRKIIHLHGYLMS-KRYLIVLDDVWTNDV---------WEFI 301 (843)
Q Consensus 247 ~~i~~~l~~~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~---------~~~l 301 (843)
+.+.+.+... ...+ ....+..++. +.+.+..+. ++++||+||++..+. +..+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLE-PRKLSLREVF--RELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSC-GGGCCHHHHH--HHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeec-cccchHHHHH--HHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 7666655420 0000 1112344555 556655543 389999999976432 2333
Q ss_pred HHhcCCCCCCcEEEEEecchhh-h------h---------c--c--ccCC---------C---CcCCcccccccchhhhh
Q 003154 302 QEILPDNLNGSRVLTTVSNIEI-L------T---------S--F--QLEN---------G---QHIRLDLVPAGGPLRVT 349 (843)
Q Consensus 302 ~~~~~~~~~gs~iiiTtR~~~v-~------~---------~--~--~~~~---------~---~~~~~~~~~~~~~i~~~ 349 (843)
...... .++.++|+|++...+ . . . + .|.. . .....--.+...+|++.
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~ 234 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVEL 234 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 322221 247889999876532 1 1 0 0 1200 0 00000112456789999
Q ss_pred cCCchhHHHHHhhhhHH-----HHHHhhhcccccchhhccCCC---chhhhhHHhhhccCCCCCccChhhHHHHHHHcCC
Q 003154 350 YEGWPFLILYHGSLSLE-----ENREKILAEPFGDQVLTYSKF---PLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGF 421 (843)
Q Consensus 350 c~GlPLai~~~g~~L~~-----~~~~~~~~~~~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~ 421 (843)
++|.|+++..++..+.. ........+....+.-.+..+ ++..+..+..+|. + .++...+....... .
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~-~ 309 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVK-G 309 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHT-T
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHH-h
Confidence 99999999988865421 111111111111111111222 6778888888887 2 23445555443221 1
Q ss_pred CCCChHHHHHHHHHHHHhcCCeEEEEeCCCCcEeEEEc-CcchHHHH
Q 003154 422 VRDNSEATAEEILEELIDRGFIQVKRRKASGTIKTCSF-SSLVWPTI 467 (843)
Q Consensus 422 i~~~~~~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~m-hdlv~~~a 467 (843)
- .........+++.|.+.+++.... ..|.+ |++++.+.
T Consensus 310 ~-~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 310 T-KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVL 348 (350)
T ss_dssp C-CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHH
Confidence 0 113456788999999999998652 13554 56777654
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1.2e-11 Score=125.74 Aligned_cols=151 Identities=24% Similarity=0.325 Sum_probs=104.7
Q ss_pred ccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhccccccccccccc
Q 003154 542 LRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLI 620 (843)
Q Consensus 542 LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 620 (843)
.+.++.+++.+..+|..+. .+|++|++++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4678888888888887665 7899999999999988665558999999999999999888754 578888999987777
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCce
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSK 700 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 700 (843)
.+... .+..+..+++|+.|++++ |... .+|..+.
T Consensus 99 ~l~~l----------------------~~~~~~~l~~L~~L~Ls~--N~l~-~lp~~~~--------------------- 132 (229)
T 3e6j_A 99 QLTVL----------------------PSAVFDRLVHLKELFMCC--NKLT-ELPRGIE--------------------- 132 (229)
T ss_dssp CCCCC----------------------CTTTTTTCTTCCEEECCS--SCCC-SCCTTGG---------------------
T ss_pred cCCcc----------------------ChhHhCcchhhCeEeccC--Cccc-ccCcccc---------------------
Confidence 76431 112255666777777765 3222 2233222
Q ss_pred EeeccCCCCCCccEEEEecCCCCCCCcccccCCCCCcEEEeeccccc
Q 003154 701 IVLFENQFPPSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYS 747 (843)
Q Consensus 701 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 747 (843)
.+ ++|+.|+|++|.+....+..+..+++|+.|+|.+|.+.
T Consensus 133 ------~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 133 ------RL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ------GC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ------cC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 33 55566666666665544455677777777777766654
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=9.1e-12 Score=125.81 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=108.8
Q ss_pred EEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcc-hHHHhccCCcccEEEcCCCCCCCCch-hccCCCCccEEEcc
Q 003154 494 RFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRD-SMKICKMFKFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLN 571 (843)
Q Consensus 494 ~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~-~~~~~~~~~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~ 571 (843)
.+.+. ++....++..+.+.++.|.+.++... .+ +...|..+++|++|+|++|.+..++. .++.+++|++|+|+
T Consensus 15 ~l~~s-~n~l~~iP~~~~~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCS-NQKLNKIPEHIPQYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeC-CCCcccCccCCCCCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 45555 44444455555667788888877653 22 23457888899999999998886654 78889999999999
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCcc
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPD 650 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~ 650 (843)
+|.++.+|+..|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+... .+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~ 147 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV----------------------APG 147 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB----------------------CTT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE----------------------CHH
Confidence 9999988887668899999999999988887 56688889999999877776541 123
Q ss_pred ccCCCCCCceEeeec
Q 003154 651 ILGRLPKLGSLQICG 665 (843)
Q Consensus 651 ~l~~l~~L~~L~l~~ 665 (843)
.+..+++|+.|++++
T Consensus 148 ~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 148 AFDTLHSLSTLNLLA 162 (220)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhcCCCCCCEEEecC
Confidence 367778888888876
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=7.3e-12 Score=136.86 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=88.0
Q ss_pred EEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhc-cCCcccEEEcCCCCCCCCc-hhccCCCCccEEEcc
Q 003154 494 RFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICK-MFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLN 571 (843)
Q Consensus 494 ~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~ 571 (843)
.+... +.....++..+.+.++.|.+.++... .+....|. ++++|++|+|++|.+..++ ..+..+++|++|+|+
T Consensus 22 ~l~c~-~~~l~~iP~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCS-KQQLPNVPQSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECC-SSCCSSCCSSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeC-CCCcCccCccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34444 44444455555666777777776653 34445555 7788888888888877665 457788888888888
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCC
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~ 624 (843)
+|.++.+|+..|.++++|++|+|++|.+..+ |..+..+++|++|+|++|.+..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 8888877776557888888888888877776 4567778888888877776654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=7e-12 Score=118.16 Aligned_cols=128 Identities=20% Similarity=0.148 Sum_probs=83.9
Q ss_pred cCCcccEEEcCCCCCC--CCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc-cchhhhccccccc
Q 003154 538 MFKFLRVLDLGSLFLD--QYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH-TADDIWKLNKLRH 614 (843)
Q Consensus 538 ~~~~LrvL~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~ 614 (843)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..+ +++++|++|++++|.+.. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3466777777777776 6777777777777777777777766 444 777777777777777766 6666667777777
Q ss_pred ccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhh---HhhcCCCCCCeEEee
Q 003154 615 LNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLS---KSLHGLSCLESLKLV 690 (843)
Q Consensus 615 L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~ 690 (843)
|++++|.+... ..+..++.+++|+.|++++ |......+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~---------------------~~~~~~~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDL---------------------STIEPLKKLENLKSLDLFN--CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSH---------------------HHHGGGGGCTTCCEEECTT--CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCCh---------------------HHHHHHhhCCCCCEEeCcC--CcccchHHHHHHHHHHCCCcccccCC
Confidence 77666665430 0012266677777777776 44333322 356667777777654
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.1e-11 Score=119.45 Aligned_cols=129 Identities=24% Similarity=0.157 Sum_probs=79.5
Q ss_pred CCcccEEEcCCCCCC--CCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcc-cchhhhcccccccc
Q 003154 539 FKFLRVLDLGSLFLD--QYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDH-TADDIWKLNKLRHL 615 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 615 (843)
.+.|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+ +.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777766 6676667777777777777777766 444 677777777777776666 56556667777777
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhh---HhhcCCCCCCeEEeecC
Q 003154 616 NFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLS---KSLHGLSCLESLKLVNE 692 (843)
Q Consensus 616 ~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~~~ 692 (843)
++++|.+... .....+..+++|+.|++++ |......+ ..+..+++|+.|+++.+
T Consensus 101 ~Ls~N~l~~~---------------------~~~~~l~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDI---------------------STLEPLKKLECLKSLDLFN--CEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSS---------------------GGGGGGSSCSCCCEEECCS--SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcc---------------------hhHHHHhcCCCCCEEEeeC--CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7666655431 0001256666777777765 43333222 25556666666666543
No 129
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=9.3e-11 Score=127.73 Aligned_cols=265 Identities=13% Similarity=0.069 Sum_probs=150.1
Q ss_pred CCCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCC-----CChHHHHH
Q 003154 173 RDNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSIL-----YQPDSLLD 247 (843)
Q Consensus 173 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~ 247 (843)
....++||+++++++.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+.+... .+...+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 34679999999999999 653 59999999999999999999984 322 2578887642 34455555
Q ss_pred HHHHHhCC-------------C-CCC--cc----c-----cccchHHHHHHHHHHHHhCCCeEEEEEcCCCCch-----h
Q 003154 248 NIIKFLMP-------------S-SKL--SE----V-----MEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTND-----V 297 (843)
Q Consensus 248 ~i~~~l~~-------------~-~~~--~~----~-----~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-----~ 297 (843)
.+.+.+.. . ... +. . .......+. +.+.+.-+ ++++||+||++..+ +
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~~~~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLL--ESFEQASK-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHH--HHHHHTCS-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHH--HHHHhcCC-CCeEEEEECHHHhhccCchh
Confidence 55443310 0 000 00 0 012233344 44444322 49999999996532 2
Q ss_pred hHHHHHhcCCCCCCcEEEEEecchhhh-------h-----------cc--ccCC---------CC--cCCcccccccchh
Q 003154 298 WEFIQEILPDNLNGSRVLTTVSNIEIL-------T-----------SF--QLEN---------GQ--HIRLDLVPAGGPL 346 (843)
Q Consensus 298 ~~~l~~~~~~~~~gs~iiiTtR~~~v~-------~-----------~~--~~~~---------~~--~~~~~~~~~~~~i 346 (843)
|..+...+.+...+.++|+|+|..... . .+ .|.. .. .......+. ..|
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~i 235 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-EVV 235 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-HHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-HHH
Confidence 333222222222468899999875421 1 00 1200 00 000011112 789
Q ss_pred hhhcCCchhHHHHHhhhhHH-----HHHHhhhcc----ccc-chhhccC--CCchhhhhHHhhhccCCCCCccChhhHHH
Q 003154 347 RVTYEGWPFLILYHGSLSLE-----ENREKILAE----PFG-DQVLTYS--KFPLYFKLCGLYLSVFPLHSEISARQLYQ 414 (843)
Q Consensus 347 ~~~c~GlPLai~~~g~~L~~-----~~~~~~~~~----~~~-~l~~sy~--~L~~~~k~cfl~~s~fp~~~~i~~~~Li~ 414 (843)
++.|+|.|+++..++..+.. ........+ +.. .-.+.++ .||+..+..+..+|. +. +...+..
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~ 310 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKR 310 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHH
Confidence 99999999999998876541 111111111 111 1112221 688889999999998 22 4455443
Q ss_pred HHH-HcCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCcEeEEE-cCcchHHH
Q 003154 415 LWI-AEGFVRDNSEATAEEILEELIDRGFIQVKRRKASGTIKTCS-FSSLVWPT 466 (843)
Q Consensus 415 ~wi-aeg~i~~~~~~~~~~~~~~L~~rsll~~~~~~~~~~~~~~~-mhdlv~~~ 466 (843)
... ..|. +........+++.|++.++|.... ..|+ .|++++++
T Consensus 311 ~~~~~~g~--~~~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~ 355 (357)
T 2fna_A 311 ALELEEGI--EISDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHCS--CCCHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHH
T ss_pred HHHHhcCC--CCCHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHh
Confidence 221 2241 012456788999999999998642 1355 46777764
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=1.5e-09 Score=119.84 Aligned_cols=266 Identities=14% Similarity=0.033 Sum_probs=163.1
Q ss_pred CceecchHHHHHHHHHHHcC----CCCceEEEEEcCCCChHHHHHHHHhcCccccccC-CeeEEEEeCCCCChHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEG----PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF-DCKAWVPVSILYQPDSLLDNI 249 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 249 (843)
..++||+.+++++.+++... .+..+.+.|+|.+|+||||||+.+++. ..... -.++|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999998762 223348999999999999999999983 33332 246777777777888999999
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCc--hhhHHHHHhcCCCC----CCcEEEEEecch
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTN--DVWEFIQEILPDNL----NGSRVLTTVSNI 321 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~--~~~~~l~~~~~~~~----~gs~iiiTtR~~ 321 (843)
+..++.... ....+..++. ..+...+. +++.+|||||++.. +....+...+.... .+..||+||+..
T Consensus 95 ~~~l~~~~~---~~~~~~~~~~--~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 95 ARSLNIPFP---RRGLSRDEFL--ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHTTCCCC---SSCCCHHHHH--HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHhCccCC---CCCCCHHHHH--HHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 998865322 1223445555 56666654 66899999999764 45555655553211 367888888776
Q ss_pred hhhh---------c------cccC-------------CC-CcCCcccccccchhhhhc---------CCchhHHHHHhh-
Q 003154 322 EILT---------S------FQLE-------------NG-QHIRLDLVPAGGPLRVTY---------EGWPFLILYHGS- 362 (843)
Q Consensus 322 ~v~~---------~------~~~~-------------~~-~~~~~~~~~~~~~i~~~c---------~GlPLai~~~g~- 362 (843)
.... + +.|. .. .....--.+..+.|++.+ +|.|-.+..+..
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4322 0 1220 00 000011123556788888 687644433322
Q ss_pred hhH------------HHHHHhhhcccccchhhccCCCchhhhhHHhhhccCC---CCCccChhhHHHHHHH----cCCCC
Q 003154 363 LSL------------EENREKILAEPFGDQVLTYSKFPLYFKLCGLYLSVFP---LHSEISARQLYQLWIA----EGFVR 423 (843)
Q Consensus 363 ~L~------------~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~Li~~wia----eg~i~ 423 (843)
... +.+...........+.-.+..||.+.+.++..++.+. .+..+....+...+.. .|. .
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ 328 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-R 328 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-C
Confidence 221 1111111111133445556788888887777777554 2324566666554433 232 1
Q ss_pred CChHHHHHHHHHHHHhcCCeEEEEe
Q 003154 424 DNSEATAEEILEELIDRGFIQVKRR 448 (843)
Q Consensus 424 ~~~~~~~~~~~~~L~~rsll~~~~~ 448 (843)
+........++++|.++++|.....
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 329 PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 1134567789999999999998654
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=2.4e-11 Score=114.50 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=85.6
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcc-cchhHhhCCccC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKS-LPSSLLSNLLNL 589 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 589 (843)
.++++.|.+.++... ....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+ +++++|
T Consensus 16 ~~~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 466777777776543 112234567889999999999988877 778889999999999999987 55554 789999
Q ss_pred cEEeCCCCcCcccc--hhhhcccccccccccccccCC
Q 003154 590 YTLDMPSSYIDHTA--DDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 590 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~l~~ 624 (843)
++|++++|.+..+| ..+..+++|++|++++|.+..
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 99999999888875 778899999999988877654
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.17 E-value=1.1e-09 Score=120.64 Aligned_cols=267 Identities=13% Similarity=0.021 Sum_probs=159.4
Q ss_pred CCceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccc------CCeeEEEEeCCCCChHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY------FDCKAWVPVSILYQPDSL 245 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~~~ 245 (843)
+..++||+.+++++.+++... ......+.|+|++|+||||||+.+++. .... --..+|+......+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 368999999999999998543 344678999999999999999999984 3221 123677888888888999
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHHHHHHHHHh--CCCeEEEEEcCCCCchh----hHHHHHhc---CCC--CCCcEE
Q 003154 246 LDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYL--MSKRYLIVLDDVWTNDV----WEFIQEIL---PDN--LNGSRV 314 (843)
Q Consensus 246 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~----~~~l~~~~---~~~--~~gs~i 314 (843)
...++.+++.... ....+..++. ..+.+.+ .+++.+|||||++.... .+.+...+ ... ..+..+
T Consensus 96 ~~~l~~~l~~~~~---~~~~~~~~~~--~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 96 ASAIAEAVGVRVP---FTGLSVGEVY--ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHSCCCC---SSCCCHHHHH--HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHhCCCCC---CCCCCHHHHH--HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 9999999976432 1233345555 6666666 35689999999976532 23332222 111 345678
Q ss_pred EEEecchhhhh---------c------ccc--------------CCCCcCCcccccccchhhhhcC---Cch-hHHHHHh
Q 003154 315 LTTVSNIEILT---------S------FQL--------------ENGQHIRLDLVPAGGPLRVTYE---GWP-FLILYHG 361 (843)
Q Consensus 315 iiTtR~~~v~~---------~------~~~--------------~~~~~~~~~~~~~~~~i~~~c~---GlP-Lai~~~g 361 (843)
|.||+...... + +.| ........--.+..+.+++.++ |.| .|+.++.
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 88887763221 1 122 0000001111234567788887 988 3333333
Q ss_pred hhhH------------HHHHHhhhcccccchhhccCCCchhhhhHHhhhc-cCCCCCccChhhHHHH----HHHcCCCCC
Q 003154 362 SLSL------------EENREKILAEPFGDQVLTYSKFPLYFKLCGLYLS-VFPLHSEISARQLYQL----WIAEGFVRD 424 (843)
Q Consensus 362 ~~L~------------~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~Li~~----wiaeg~i~~ 424 (843)
.+.. ..+.+.........+.-++..|+.+.+..++.++ ++-....+...++.+. .-..| +.+
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH 329 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC
Confidence 3322 0111100000123445567889988877766666 4432224444544333 22234 233
Q ss_pred ChHHHHHHHHHHHHhcCCeEEEEe
Q 003154 425 NSEATAEEILEELIDRGFIQVKRR 448 (843)
Q Consensus 425 ~~~~~~~~~~~~L~~rsll~~~~~ 448 (843)
.....+..+++.|...++++....
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 330 VTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCeEEEee
Confidence 356778899999999999998653
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=6.5e-10 Score=122.49 Aligned_cols=265 Identities=14% Similarity=0.023 Sum_probs=157.5
Q ss_pred CceecchHHHHHHHHHHHc--CCCCceEEEEEcCCCChHHHHHHHHhcCcccccc--------CCeeEEEEeCCCC-ChH
Q 003154 175 NDIVGLDDKMEELLDHLIE--GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY--------FDCKAWVPVSILY-QPD 243 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--------F~~~~wv~~s~~~-~~~ 243 (843)
..++||+.+++++.+++.. .....+.+.|+|++|+||||||+.+++. .... ....+|+..+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865 2334668999999999999999999983 3222 2346788877766 888
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCchh---hHH-HHHhcCCCCCCcEEEEEec
Q 003154 244 SLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTNDV---WEF-IQEILPDNLNGSRVLTTVS 319 (843)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~---~~~-l~~~~~~~~~gs~iiiTtR 319 (843)
.++.+++.++.+.... ....+...+. ..+.+.++.++.+|||||++.... .+. +...+... .+..||+||+
T Consensus 98 ~~~~~l~~~l~~~~~~--~~~~~~~~~~--~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVP--KHGINLGEYI--DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHCSCCC--SSSSCTHHHH--HHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCC--CCCCCHHHHH--HHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 8999999988432110 1223345566 778888887777999999976432 222 22222222 6788999998
Q ss_pred chhhhh----------c----ccc-----------C--C-CCcCCcccccccchhhhhcC---Cchh-HHHHHhhhhH--
Q 003154 320 NIEILT----------S----FQL-----------E--N-GQHIRLDLVPAGGPLRVTYE---GWPF-LILYHGSLSL-- 365 (843)
Q Consensus 320 ~~~v~~----------~----~~~-----------~--~-~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~g~~L~-- 365 (843)
...... + +.| . . ......--.+..+.+++.++ |-|. |+..+-....
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 763211 1 122 0 0 00001111234566777887 8765 4433333221
Q ss_pred --------HHHHHhhhcccccchhhccCCCchhhhhHHhhhccCCCCCccChhhHHHHHHHcCCCCCChHHHHHHHHHHH
Q 003154 366 --------EENREKILAEPFGDQVLTYSKFPLYFKLCGLYLSVFPLHSEISARQLYQLWIAEGFVRDNSEATAEEILEEL 437 (843)
Q Consensus 366 --------~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~Li~~wiaeg~i~~~~~~~~~~~~~~L 437 (843)
+.+.+.+.......+.-+++.|+.+.+..+..++....+-.+. +......-..| +.+........+++.|
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L 330 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISEL 330 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHH
Confidence 1111111111123456667889888777776666511101111 11112222334 2222456778899999
Q ss_pred HhcCCeEEEEe
Q 003154 438 IDRGFIQVKRR 448 (843)
Q Consensus 438 ~~rsll~~~~~ 448 (843)
.++++++....
T Consensus 331 ~~~gli~~~~~ 341 (384)
T 2qby_B 331 DMFGIVKIRII 341 (384)
T ss_dssp HHTTSEEEEEE
T ss_pred HhCCCEEEEec
Confidence 99999997654
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=4.6e-11 Score=116.05 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=62.5
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
+++++.|.+.++.... + +.+....++|++|+|++|.+..+ ..++.+++|++|++++|.++.+|+.+++.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~----i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV----I-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS----C-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch----h-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 5566666666655431 1 12222333666666666666655 4566666666666666666666655556666666
Q ss_pred EEeCCCCcCcccch--hhhccccccccccccccc
Q 003154 591 TLDMPSSYIDHTAD--DIWKLNKLRHLNFGLITL 622 (843)
Q Consensus 591 ~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~l 622 (843)
+|++++|.+..+|. .+..+++|++|++++|.+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 66666666666655 566666666666555554
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=4e-12 Score=151.43 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=90.2
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhccCCcccE-----EEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhC
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRV-----LDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSN 585 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lrv-----L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~ 585 (843)
.++++.|.+.++.... .. ..+.....|+. +++..+.+...|..+..+.+|++|+|++|.+..+|..+ .+
T Consensus 172 ~~~~~~l~L~~n~~~~----~~-~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~ 245 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE----AN-QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GG
T ss_pred CCccceEEeeCCCCCc----ch-hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cC
Confidence 4567777776655431 11 11112222333 33333444455778899999999999999999999998 79
Q ss_pred CccCcEEeCCCCcCcccchhhhcccccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeec
Q 003154 586 LLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICG 665 (843)
Q Consensus 586 L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 665 (843)
+++|++|+|++|.+..+|..++.|++|++|+|++|.+.. ++..++.+++|+.|++++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-----------------------lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-----------------------LPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-----------------------CCSSGGGGTTCSEEECCS
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-----------------------cChhhcCCCCCCEEECCC
Confidence 999999999999999999999999999999988887652 233478889999999987
Q ss_pred CCcchhhhhhHhhcCCCCCCeEEeecCC
Q 003154 666 DLNYYQSLLSKSLHGLSCLESLKLVNES 693 (843)
Q Consensus 666 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 693 (843)
|.. ..+|..+..+++|+.|+|++|.
T Consensus 303 --N~l-~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 303 --NMV-TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp --SCC-CCCCSSTTSCTTCCCEECTTSC
T ss_pred --CCC-CccChhhhcCCCccEEeCCCCc
Confidence 544 3667778888888888888654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=8e-11 Score=116.11 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=90.6
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchh-HhhCCccCcEEeCCCCcCccc-chhhhccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSS-LLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLI 620 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~ 620 (843)
++|+++++.++.+|..+.. +|++|++++|.++.+++. +|+++++|++|+|++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7888888888888876654 888999999888888764 238888999999998888877 667888888888887777
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecC
Q 003154 621 TLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNE 692 (843)
Q Consensus 621 ~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 692 (843)
.+.+. .+..+..+++|+.|++++ |......+..+..+++|+.|++++|
T Consensus 89 ~l~~~----------------------~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEI----------------------SNKMFLGLHQLKTLNLYD--NQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEE----------------------CSSSSTTCTTCCEEECCS--SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCcc----------------------CHHHhcCCCCCCEEECCC--CcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 76431 112266777788888876 5555555555555666666665544
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=8.4e-11 Score=113.18 Aligned_cols=124 Identities=19% Similarity=0.047 Sum_probs=57.9
Q ss_pred cceEEEEEeeCCCCC--cccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCC-CchhccCCCC
Q 003154 490 KRVRRFCANVNLGEL--DSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQ-YPAGIENLSR 564 (843)
Q Consensus 490 ~~~r~Lsl~~~~~~~--~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~-lp~~i~~L~~ 564 (843)
.++++|.+. ++... .++..+ +++|+.|.+.++.... + ..+..+++|++|+|++|.+.. +|..++.+++
T Consensus 24 ~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 345555555 33322 233332 4555555555444321 1 334445555555555555443 4444444555
Q ss_pred ccEEEccCCCCcccc--hhHhhCCccCcEEeCCCCcCcccch----hhhcccccccccccccc
Q 003154 565 LRYLKLNIPSLKSLP--SSLLSNLLNLYTLDMPSSYIDHTAD----DIWKLNKLRHLNFGLIT 621 (843)
Q Consensus 565 Lr~L~L~~~~i~~lp--~~i~~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~L~~~~ 621 (843)
|++|++++|.++.+| ..+ +++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555555555555444 233 455555555555555544443 34455555555544433
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.3e-10 Score=112.84 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=100.6
Q ss_pred EEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCCCccEEEccC
Q 003154 494 RFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNI 572 (843)
Q Consensus 494 ~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~ 572 (843)
.+... +.....++..+.+++++|.+.++... .++...|..+++|++|+|++|.+..+|.. ++.+++|++|++++
T Consensus 11 ~l~~~-~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 11 EIRCN-SKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEECC-SSCCSSCCTTCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEec-CCCCccCCCCCCCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44444 44444455445788999998887753 34556778899999999999999887755 68899999999999
Q ss_pred CCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccccCC
Q 003154 573 PSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 573 ~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~ 624 (843)
|.++.+|+..+.++++|++|++++|.+..+|.. +..+++|++|++++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999999887668999999999999999988876 4789999999988887764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=6.8e-11 Score=114.85 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=99.4
Q ss_pred hccCCcccEEEcCCCCCCCCchhccCCC-CccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhh-hcccccc
Q 003154 536 CKMFKFLRVLDLGSLFLDQYPAGIENLS-RLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDI-WKLNKLR 613 (843)
Q Consensus 536 ~~~~~~LrvL~L~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~ 613 (843)
+..+..|++|++++|.+..+|. +..+. +|++|++++|.++.+ +.+ +++++|++|++++|.+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 5667889999999999988864 55555 999999999999988 455 89999999999999999998665 8999999
Q ss_pred cccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhH----hhcCCCCCCeEEe
Q 003154 614 HLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSK----SLHGLSCLESLKL 689 (843)
Q Consensus 614 ~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~----~l~~l~~L~~L~l 689 (843)
+|++++|.+... + . +. .+..+++|+.|++++ |... .++. .+..+++|+.|++
T Consensus 92 ~L~L~~N~i~~~--~------~------------~~-~l~~l~~L~~L~l~~--N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 92 ELILTNNSLVEL--G------D------------LD-PLASLKSLTYLCILR--NPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp EEECCSCCCCCG--G------G------------GG-GGGGCTTCCEEECCS--SGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred EEECCCCcCCcc--h------h------------hH-hhhcCCCCCEEEecC--CCCC-CcHhHHHHHHHHCCccceeCC
Confidence 999888876431 0 0 01 266778888888886 4433 3333 3677888888888
Q ss_pred ecCC
Q 003154 690 VNES 693 (843)
Q Consensus 690 ~~~~ 693 (843)
+.+.
T Consensus 148 ~~n~ 151 (176)
T 1a9n_A 148 QKVK 151 (176)
T ss_dssp EECC
T ss_pred CcCC
Confidence 7653
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=8.8e-12 Score=123.71 Aligned_cols=130 Identities=22% Similarity=0.192 Sum_probs=104.2
Q ss_pred HHHhccCCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhccccc
Q 003154 533 MKICKMFKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKL 612 (843)
Q Consensus 533 ~~~~~~~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L 612 (843)
+..+..+++|++|+|++|.+..+| .++.+++|++|++++|.++.+|..+ ..+++|++|++++|.+..+| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 447888999999999999988888 8899999999999999999999876 88899999999999998887 68899999
Q ss_pred ccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhH----------hhcCCC
Q 003154 613 RHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSK----------SLHGLS 682 (843)
Q Consensus 613 ~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~----------~l~~l~ 682 (843)
++|++++|.+... . .+ ..+..+++|+.|++++ |......|. .+..++
T Consensus 118 ~~L~l~~N~i~~~-----------~---------~~-~~l~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 118 RVLYMSNNKITNW-----------G---------EI-DKLAALDKLEDLLLAG--NPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp SEEEESEEECCCH-----------H---------HH-HHHTTTTTCSEEEECS--CHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CEEECCCCcCCch-----------h---------HH-HHHhcCCCCCEEEecC--CccccccccccchHHHHHHHHHhCC
Confidence 9999888876531 0 01 1277889999999987 655444332 366777
Q ss_pred CCCeEE
Q 003154 683 CLESLK 688 (843)
Q Consensus 683 ~L~~L~ 688 (843)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777775
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=9.2e-11 Score=115.65 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=102.6
Q ss_pred EEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchH-HHhccCCcccEEEcCCCCCCCC-chhccCCCCccEEEc
Q 003154 493 RRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSM-KICKMFKFLRVLDLGSLFLDQY-PAGIENLSRLRYLKL 570 (843)
Q Consensus 493 r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~-~~~~~~~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L 570 (843)
+.+.+. +.....++..+.++++.|.+.++... .+.. ..|..+++|++|+|++|.+..+ |..++.+++|++|+|
T Consensus 11 ~~l~~s-~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCT-GRGLKEIPRDIPLHTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECT-TSCCSSCCSCCCTTCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcC-CCCcCcCccCCCCCCCEEECCCCcCC----ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 345555 44555566656668999999888763 2332 3588999999999999999866 778999999999999
Q ss_pred cCCCCcccchhHhhCCccCcEEeCCCCcCccc-chhhhcccccccccccccccCC
Q 003154 571 NIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHT-ADDIWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 571 ~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~l~~ 624 (843)
++|.++.+++..|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999988887558999999999999999877 6778899999999988888764
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.4e-10 Score=112.64 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=45.3
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhcccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLIT 621 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 621 (843)
++++++++.+..+|..+. .+|++|++++|.++.+|..+ .++++|++|+|++|.+..++. .+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666666666665443 35666666666666666544 666666666666666655543 35566666666655555
Q ss_pred cC
Q 003154 622 LP 623 (843)
Q Consensus 622 l~ 623 (843)
+.
T Consensus 90 l~ 91 (193)
T 2wfh_A 90 LR 91 (193)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.1e-10 Score=113.12 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=95.2
Q ss_pred EEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCC
Q 003154 495 FCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIP 573 (843)
Q Consensus 495 Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~ 573 (843)
+... +.....++..+.+++++|.+.++... .++ ..|..+++|++|+|++|.+..++ ..+..+++|++|+|++|
T Consensus 15 l~~~-~~~l~~ip~~~~~~l~~L~L~~n~i~----~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 15 VRCS-NKGLKVLPKGIPRDVTELYLDGNQFT----LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EECT-TSCCSSCCSCCCTTCCEEECCSSCCC----SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcC-CCCCCcCCCCCCCCCCEEECCCCcCc----hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4444 44444455555778888888877763 233 57788889999999998888766 45888899999999999
Q ss_pred CCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccccCC
Q 003154 574 SLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPA 624 (843)
Q Consensus 574 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~ 624 (843)
.++.+|+..|.++++|++|+|++|.+..+|.. +..+++|++|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888876568889999999999988888764 7788889999988877653
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.4e-10 Score=123.08 Aligned_cols=283 Identities=13% Similarity=0.058 Sum_probs=159.1
Q ss_pred ccceeEEEeecCCCCCCCCcchHHHhcc-CCcccEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhC----
Q 003154 511 DSYLHSFLYLSPESDHLNPRDSMKICKM-FKFLRVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSN---- 585 (843)
Q Consensus 511 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~-~~~LrvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~---- 585 (843)
..++..|.+.+.-.. . .-..+.. +++|++|||++|.+......-+.++.++++.+..+ .+|+..|.+
T Consensus 24 ~~~l~~L~l~g~i~~----~-~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA----E-DFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECH----H-HHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hCceeEEEEeccccH----H-HHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence 567888888764321 1 1233444 78899999999887621111122223444444443 455555556
Q ss_pred ----CccCcEEeCCCCcCcccchh-hhcccccccccccccccCCC---CCCCCCCcccccccccc---CCCCCCccccCC
Q 003154 586 ----LLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLPAH---PGKYCSSLENLNFISAL---HPRCCTPDILGR 654 (843)
Q Consensus 586 ----L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~~---~~~~l~~L~~L~~~~~~---~~~~~~~~~l~~ 654 (843)
+.+|+.|+|.+ .+..++.. +..+++|+.|++++|.+... .+..+.++.++..-... .....-...+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 67777777766 66666443 66666777777665543321 11123333333211100 000001111445
Q ss_pred CCCCc-eEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-cc-CCCCCCccEEEEecCCCCCCCccccc
Q 003154 655 LPKLG-SLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FE-NQFPPSLTHLSFSNTDLIDDPMPTLE 731 (843)
Q Consensus 655 l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~-~~lp~~L~~L~L~~~~l~~~~~~~l~ 731 (843)
+.+|+ .+.+.... .....+...-....++..+.+.+.- ..-.. .+ ..+ ++|+.|+|++|.+.......|.
T Consensus 175 ~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l-----~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 175 GEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKL-----DNADFKLIRDYM-PNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp SCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECC-----CHHHHHHHHHHC-TTCCEEECTTBCCCEECTTTTT
T ss_pred ccccceeEEecCCC-cHHHHHhhcccCccccceEEEeeee-----cHHHHHHHHHhc-CCCeEEECCCCCcceecHhhhh
Confidence 56666 45454311 1112222222234556666665321 00000 00 013 7888999998887766667899
Q ss_pred CCCCCcEEEeecccccCCccccCCCCCCccc-EEEecCcccccccc-cccccccccceEeeecCCCCCCCCc-cccCCCC
Q 003154 732 KLPYLQVLKLKQNSYSGRKLACGSDGFPKLK-VLHLKSMIWLEEWT-MGNEAMPKLECLVVNPCAYLKRLPE-HLWCMKN 808 (843)
Q Consensus 732 ~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~-~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~ 808 (843)
++++|+.|.|.+| +.. .....+.++++|+ .|.+.+ .++.++ ..+..+++|+.|.+.++. ++.++. .+.+|++
T Consensus 248 ~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVP 322 (329)
T ss_dssp TCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCC
T ss_pred CCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcc
Confidence 9999999999865 332 2334456788999 999987 467664 456789999999998776 556654 7889999
Q ss_pred CcEEEe
Q 003154 809 FKKLEL 814 (843)
Q Consensus 809 L~~L~l 814 (843)
|+.|+.
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 999864
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.02 E-value=3.1e-09 Score=116.99 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=153.0
Q ss_pred CCceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccC---CeeEEEEeCCCCChHHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF---DCKAWVPVSILYQPDSLLDN 248 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~ 248 (843)
+..++||+.+++++.+++... ......+.|+|++|+||||||+.+++ .....| ...+|+......+...+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 467999999999999998752 33467899999999999999999998 444443 24677777666677788888
Q ss_pred HHHHhCCCCCCccccccchHHHHHHHHHHHHhC--CCeEEEEEcCCCCc------hhhHHHHHhcCC-CCCCcEEEEEec
Q 003154 249 IIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLM--SKRYLIVLDDVWTN------DVWEFIQEILPD-NLNGSRVLTTVS 319 (843)
Q Consensus 249 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~------~~~~~l~~~~~~-~~~gs~iiiTtR 319 (843)
++.+++.... ....+..+.. ..+.+.+. +++.+||+||++.. +.+..+...+.. ...+..+|+||+
T Consensus 97 i~~~l~~~~~---~~~~~~~~~~--~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 97 LLESLDVKVP---FTGLSIAELY--RRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HTTTTSCCCC---SSSCCHHHHH--HHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHhCCCCC---CCCCCHHHHH--HHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 8887754322 1222344555 56666664 45899999999653 334444433321 233567788888
Q ss_pred chhhhh---------cc------ccCC--------------CCcCCcccccccchhhhhcC---CchhHHH-HHhhhhHH
Q 003154 320 NIEILT---------SF------QLEN--------------GQHIRLDLVPAGGPLRVTYE---GWPFLIL-YHGSLSLE 366 (843)
Q Consensus 320 ~~~v~~---------~~------~~~~--------------~~~~~~~~~~~~~~i~~~c~---GlPLai~-~~g~~L~~ 366 (843)
...... ++ .|.. ......--.+..+.+++.++ |.|..+. ++......
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 664322 11 2200 00001111234556777777 8887443 33222210
Q ss_pred ------------HHHHhhhcccccchhhccCCCchhhhhHHhhhccCCC-C-CccChhhHHHH----HHHcCCCCCChHH
Q 003154 367 ------------ENREKILAEPFGDQVLTYSKFPLYFKLCGLYLSVFPL-H-SEISARQLYQL----WIAEGFVRDNSEA 428 (843)
Q Consensus 367 ------------~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~Li~~----wiaeg~i~~~~~~ 428 (843)
.+...........+.-++..+|.+.+..+..++.+.+ + ..+...++.+. .-..| +.+....
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~~ 330 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQR 330 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCHH
T ss_pred HHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCHH
Confidence 0000000000234555667888887777766664222 2 12333333222 11223 2222345
Q ss_pred HHHHHHHHHHhcCCeEEEE
Q 003154 429 TAEEILEELIDRGFIQVKR 447 (843)
Q Consensus 429 ~~~~~~~~L~~rsll~~~~ 447 (843)
....+++.|.+.++++...
T Consensus 331 ~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 331 RVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 6788999999999998764
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.2e-09 Score=106.03 Aligned_cols=78 Identities=29% Similarity=0.333 Sum_probs=38.6
Q ss_pred cEEEcCCCCCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccc
Q 003154 543 RVLDLGSLFLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLIT 621 (843)
Q Consensus 543 rvL~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 621 (843)
+.++++++.+..+|..+. .+|++|++++|.++.+|+..|+++++|++|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555555543332 3555555555555555544334555555555555555555433 3455555555544444
Q ss_pred c
Q 003154 622 L 622 (843)
Q Consensus 622 l 622 (843)
+
T Consensus 88 l 88 (177)
T 2o6r_A 88 L 88 (177)
T ss_dssp C
T ss_pred c
Confidence 3
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=1.4e-09 Score=105.16 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=72.3
Q ss_pred CcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 617 (843)
+.|++|+|++|.+..+ |..++++++|++|+|++|.|+.+|+.+|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 6788999999988876 56788899999999999999988888768899999999999988888775 888899999998
Q ss_pred cccccCC
Q 003154 618 GLITLPA 624 (843)
Q Consensus 618 ~~~~l~~ 624 (843)
++|.+..
T Consensus 113 ~~N~~~c 119 (174)
T 2r9u_A 113 YNNPWDC 119 (174)
T ss_dssp CSSCBCT
T ss_pred CCCCccc
Confidence 8887754
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=2.7e-09 Score=102.73 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=70.5
Q ss_pred CcccEEEcCCCCCCCC-chhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccc
Q 003154 540 KFLRVLDLGSLFLDQY-PAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNF 617 (843)
Q Consensus 540 ~~LrvL~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 617 (843)
+.|++|+|++|.+..+ |..+..+.+|++|+|++|.|+.+|+..|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6788888888888876 55688888888888888888888887768888888888888888888764 778888888888
Q ss_pred cccccCC
Q 003154 618 GLITLPA 624 (843)
Q Consensus 618 ~~~~l~~ 624 (843)
++|.+..
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 8887754
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=2.5e-10 Score=113.20 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=88.9
Q ss_pred ccEEEcCCC--CCCCCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccc
Q 003154 542 LRVLDLGSL--FLDQYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGL 619 (843)
Q Consensus 542 LrvL~L~~~--~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 619 (843)
|+.+.++++ .++.+|..++.+++|++|++++|.++.+| .+ +++++|++|++++|.+..+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 444455443 35566779999999999999999999998 66 999999999999999999998888899999999888
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhh-HhhcCCCCCCeEEee
Q 003154 620 ITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLS-KSLHGLSCLESLKLV 690 (843)
Q Consensus 620 ~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~ 690 (843)
|.+.. ++. +..+++|+.|++++ |......+ ..+..+++|+.|+++
T Consensus 103 N~l~~-----------------------l~~-~~~l~~L~~L~l~~--N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 103 NQIAS-----------------------LSG-IEKLVNLRVLYMSN--NKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EECCC-----------------------HHH-HHHHHHSSEEEESE--EECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CcCCc-----------------------CCc-cccCCCCCEEECCC--CcCCchhHHHHHhcCCCCCEEEec
Confidence 88754 122 66677888888886 43332111 345555555555444
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=8.4e-09 Score=99.66 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=93.4
Q ss_pred EEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCCCccEEEccC
Q 003154 494 RFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLNI 572 (843)
Q Consensus 494 ~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~~ 572 (843)
.+.+. ++....++..+.++++.|.+.++... .+++..|.++++|++|+|++|.+..+|.. +.++++|++|+|++
T Consensus 16 ~l~~~-~n~l~~iP~~~~~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQ-NIRLASVPAGIPTDKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeC-CCCCCccCCCcCCCCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555 45555566666889999999988874 35567789999999999999999999876 58999999999999
Q ss_pred CCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccc
Q 003154 573 PSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNK 611 (843)
Q Consensus 573 ~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 611 (843)
|.|+.+|+..|.++++|++|+|++|.+...|..+..+.+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~ 129 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRN 129 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHH
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHH
Confidence 999999998559999999999999999888776655543
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=1.5e-08 Score=97.41 Aligned_cols=110 Identities=21% Similarity=0.223 Sum_probs=90.0
Q ss_pred EEEEEeeCCCCCccccccccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCchh-ccCCCCccEEEcc
Q 003154 493 RRFCANVNLGELDSFDRLDSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYPAG-IENLSRLRYLKLN 571 (843)
Q Consensus 493 r~Lsl~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp~~-i~~L~~Lr~L~L~ 571 (843)
+.+.+. ++....++..+.++++.|.+.++... .+.+..|.++++|++|+|++|.+..+|.. +..+++|++|+|+
T Consensus 12 ~~l~~s-~n~l~~ip~~~~~~l~~L~L~~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCS-GKSLASVPTGIPTTTQVLYLYDNQIT----KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECT-TSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeC-CCCcCccCccCCCCCcEEEcCCCcCC----ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345555 55555566666889999999988774 35567789999999999999999988875 5899999999999
Q ss_pred CCCCcccchhHhhCCccCcEEeCCCCcCcccchhhh
Q 003154 572 IPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIW 607 (843)
Q Consensus 572 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~ 607 (843)
+|.++.+|+..|.++++|++|+|++|.+...+..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 999999999866999999999999998876654433
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=3e-07 Score=101.17 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=161.5
Q ss_pred chHHHhccCCcccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcc
Q 003154 531 DSMKICKMFKFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKL 609 (843)
Q Consensus 531 ~~~~~~~~~~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L 609 (843)
+....|.++ .|+.++|..+ +..++. .+.+ .+|+.+.+.. .+..++...|.+|.+|+.+++.+|.+..+|......
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 455667775 6999998776 555543 4455 3699999886 678888777789999999999998898888775556
Q ss_pred cccccccccccccCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEe
Q 003154 610 NKLRHLNFGLITLPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKL 689 (843)
Q Consensus 610 ~~L~~L~L~~~~l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l 689 (843)
.+|+.+.+..+ ++++. ...+..+++|+.+.+.. +. ...-...+.. .+|+.+.+
T Consensus 203 ~~L~~l~lp~~------------l~~I~-----------~~aF~~~~~L~~l~l~~--~l-~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 203 AGIEEVLLPVT------------LKEIG-----------SQAFLKTSQLKTIEIPE--NV-STIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp CCCSEEECCTT------------CCEEC-----------TTTTTTCTTCCCEECCT--TC-CEECTTTTTT-CCCSEEEE
T ss_pred cccCEEEeCCc------------hheeh-----------hhHhhCCCCCCEEecCC--Cc-cCcccccccc-CCccEEEe
Confidence 88888883221 22221 12266677777777764 21 1111123333 57888877
Q ss_pred ecCCCCCCCceEee-ccCCCCCCccEEEEecCCCC-----CCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccE
Q 003154 690 VNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLI-----DDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKV 763 (843)
Q Consensus 690 ~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~ 763 (843)
.. +++.+.- .+..+ ++|+.+.+.++.+. ......|.+|++|+.+.|. +.+.. .....+.++++|+.
T Consensus 256 p~-----~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 256 PN-----GVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGLLGGNRKVTQ 327 (401)
T ss_dssp ET-----TCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTTTTTCCSCCE
T ss_pred CC-----CccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-EhhhhhcCCCCccE
Confidence 42 2443321 23344 77888888877543 2345578899999999998 43332 12234556889999
Q ss_pred EEecCcccccccc-cccccccccceEeeecCCCCCCCCccccCCC-CCcEEEecCCCHHHHHhccc
Q 003154 764 LHLKSMIWLEEWT-MGNEAMPKLECLVVNPCAYLKRLPEHLWCMK-NFKKLELWWPQPELRQKMRD 827 (843)
Q Consensus 764 L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~ 827 (843)
+.|.. +++.+. ..+..+ +|+.+.+.++....-.+..+..++ +++.|.+-. ...+.++.
T Consensus 328 l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~---~~~~~y~~ 387 (401)
T 4fdw_A 328 LTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA---ESVEKYKN 387 (401)
T ss_dssp EEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG---GGHHHHHH
T ss_pred EEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH---HHHHHhhh
Confidence 99965 366663 345567 999999998864332234566674 788887755 34555544
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.63 E-value=1.5e-07 Score=95.97 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=95.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.+++||+..++.+..++..+. ....+.|+|.+|+||||||+.+++. ....+.... ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~----~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA----TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS----SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC----CCCcccHH-HHHHhccCC
Confidence 469999999999999998754 2358899999999999999999874 322211000 00000000 011110000
Q ss_pred CCCCCcccc---ccchHHHHHHHHHHHHh-----CCCeEEEEEcCCCC--chhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 255 PSSKLSEVM---EDRDYEMRKIIHLHGYL-----MSKRYLIVLDDVWT--NDVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 255 ~~~~~~~~~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~--~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
. ...... ....+.+ ..+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+.....
T Consensus 95 ~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 95 V--DLIEIDAASRTKVEDT---RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp S--SEEEEETTCGGGHHHH---HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred c--ceEEecCcccccHHHH---HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0 000000 0111122 2222322 35679999999965 456777777666555678899998765422
Q ss_pred h------c--c--ccCC------------CCcCCcccccccchhhhhcCCchhHHHHHhh
Q 003154 325 T------S--F--QLEN------------GQHIRLDLVPAGGPLRVTYEGWPFLILYHGS 362 (843)
Q Consensus 325 ~------~--~--~~~~------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~ 362 (843)
. + + .|.. ......--.+..+.|++.|+|.|..+..+..
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 1 1 2200 0000011123456788899999987765443
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=6.3e-08 Score=104.86 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=74.2
Q ss_pred hccCCcccEEEcCC-CCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccc
Q 003154 536 CKMFKFLRVLDLGS-LFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLR 613 (843)
Q Consensus 536 ~~~~~~LrvL~L~~-~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 613 (843)
+..+++|++|+|++ |.+..+| ..|++|.+|++|+|++|.|+.+|+..|++|++|+.|+|++|.|..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 77888899999986 8888776 568899999999999999998888767899999999999999988887655444499
Q ss_pred cccccccccCC
Q 003154 614 HLNFGLITLPA 624 (843)
Q Consensus 614 ~L~L~~~~l~~ 624 (843)
.|++.+|.+..
T Consensus 107 ~l~l~~N~~~c 117 (347)
T 2ifg_A 107 ELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCCC
T ss_pred EEEeeCCCccC
Confidence 99988887763
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=1.3e-07 Score=101.49 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=121.7
Q ss_pred chHHHhcc--------CCcccEEEcCCCCCCCCch-hccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCc---
Q 003154 531 DSMKICKM--------FKFLRVLDLGSLFLDQYPA-GIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSY--- 598 (843)
Q Consensus 531 ~~~~~~~~--------~~~LrvL~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~--- 598 (843)
++...|.+ +++|+.|+|.+ .+..++. .+.+|.+|+.|+++.|.+..+++..|.++.++..+.+....
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 34456666 77777777777 6665543 46677777777777777777777666666666666665421
Q ss_pred -Cccc-chhhhcccccc-cccccccc-cCCC---CCCCCCCccccccccccCCCCCCccccCCCCCCceEeeecCCcchh
Q 003154 599 -IDHT-ADDIWKLNKLR-HLNFGLIT-LPAH---PGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICGDLNYYQ 671 (843)
Q Consensus 599 -l~~l-p~~i~~L~~L~-~L~L~~~~-l~~~---~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 671 (843)
...+ +..+..+.+|+ .+.+.... +... .--...++..+..... ............+++|+.|++.+ +...
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~--n~i~ 239 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISK--TNAT 239 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTT--BCCC
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCC--CCcc
Confidence 1111 11122333333 11110000 0000 0001122222211110 00000111011378899999886 4343
Q ss_pred hhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCcc-EEEEecCCCCCCCcccccCCCCCcEEEeecccccCC
Q 003154 672 SLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLT-HLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGR 749 (843)
Q Consensus 672 ~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~-~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 749 (843)
..-...+..+.+|+.|.+.. +++.+.- .+..+ ++|+ .+.+.. .+.......|.+|++|+.|++.+|.+...
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~-----ni~~I~~~aF~~~-~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPH-----NLKTIGQRVFSNC-GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp EECTTTTTTCTTCCEEECCT-----TCCEECTTTTTTC-TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred eecHhhhhCCCCCCEEECCc-----ccceehHHHhhCC-hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 33345678888999998864 3554432 23345 6788 888887 55555567889999999999987766542
Q ss_pred ccccCCCCCCcccEEEe
Q 003154 750 KLACGSDGFPKLKVLHL 766 (843)
Q Consensus 750 ~~~~~~~~f~~L~~L~L 766 (843)
. ...+.++++|+.++.
T Consensus 313 ~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 313 G-DELFGNGVPSKLIYK 328 (329)
T ss_dssp C-TTTTCTTCCCCEEEC
T ss_pred c-hhhhcCCcchhhhcc
Confidence 2 234556788888764
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.53 E-value=1.6e-07 Score=94.24 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=76.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc-CC-eeEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-FD-CKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.+++|++..++++.+++..+. ...+.|+|.+|+||||||+.+++. .... +. ..+.+..+...+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------ 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVR------ 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHH------
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHH------
Confidence 468999999999999998764 334899999999999999999873 3222 22 23333433333322221
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHHh------CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGYL------MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
..+.... .+++.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 87 ---------------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 87 ---------------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp ---------------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ---------------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1222221 257899999999764 345556555554455788999988653
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=2.7e-08 Score=108.50 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=9.9
Q ss_pred CCccEEEEecCCCCCC
Q 003154 710 PSLTHLSFSNTDLIDD 725 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~ 725 (843)
++|++|+|++|.+...
T Consensus 239 ~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 239 PSLELLHLYFNELSSE 254 (372)
T ss_dssp SSCCEEECTTSSCCHH
T ss_pred CCCCEEeccCCCCCHH
Confidence 5566666766666543
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=2.9e-07 Score=99.58 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=72.7
Q ss_pred EEEcCCC-CCCCCchhccCCCCccEEEccC-CCCcccchhHhhCCccCcEEeCCCCcCcccch-hhhccccccccccccc
Q 003154 544 VLDLGSL-FLDQYPAGIENLSRLRYLKLNI-PSLKSLPSSLLSNLLNLYTLDMPSSYIDHTAD-DIWKLNKLRHLNFGLI 620 (843)
Q Consensus 544 vL~L~~~-~~~~lp~~i~~L~~Lr~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 620 (843)
.++++++ .+..+|. +..+.+|++|+|++ |.+..+|+..|++|.+|++|+|++|.|..+|. .|..|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 99999998766999999999999999999865 5799999999999999
Q ss_pred ccCC
Q 003154 621 TLPA 624 (843)
Q Consensus 621 ~l~~ 624 (843)
.+..
T Consensus 91 ~l~~ 94 (347)
T 2ifg_A 91 ALES 94 (347)
T ss_dssp CCSC
T ss_pred ccce
Confidence 8875
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.39 E-value=3.7e-06 Score=92.49 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=70.9
Q ss_pred cceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCccCc
Q 003154 512 SYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLY 590 (843)
Q Consensus 512 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 590 (843)
.+|+++.+..+- ..+....|.++ .|+.+.|.. .+..++ ..+.+|.+|+.++++.|.++.+|...|. +.+|+
T Consensus 135 ~~L~~i~l~~~i-----~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~ 206 (401)
T 4fdw_A 135 SQIAKVVLNEGL-----KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE 206 (401)
T ss_dssp CCCSEEECCTTC-----CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS
T ss_pred CCccEEEeCCCc-----cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccC
Confidence 357777754431 23455667775 588898886 555554 4678889999999998889999888855 68899
Q ss_pred EEeCCCCcCcccch-hhhccccccccccc
Q 003154 591 TLDMPSSYIDHTAD-DIWKLNKLRHLNFG 618 (843)
Q Consensus 591 ~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 618 (843)
.+.|..+ +..++. .+..+++|+.+.+.
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 9998744 777754 47788888888843
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=9.7e-06 Score=89.19 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=60.1
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccc-cccccccccceE
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWT-MGNEAMPKLECL 788 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L 788 (843)
..++.+......+. ...+..+.+|+.+.+..+ +.. .-...+.++.+|+.+.|.+ .++.+. ..+..+.+|+.+
T Consensus 276 ~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 276 SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEE
T ss_pred cccceeccCceeec---cccccccccccccccccc-cce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEE
Confidence 45555555443321 234667888888888633 221 1122345577888888853 355553 234567888888
Q ss_pred eeecCCCCCCCCc-cccCCCCCcEEEecCC
Q 003154 789 VVNPCAYLKRLPE-HLWCMKNFKKLELWWP 817 (843)
Q Consensus 789 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~ 817 (843)
.+..+ ++.++. .+.+|++|+++++...
T Consensus 349 ~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 349 NFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 88654 555543 6788888998888643
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=5.4e-08 Score=106.08 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=36.3
Q ss_pred CCcccEEEcCCCCCCC-----Cchhcc-CCCCccEEEccCCCCccc-chhHhhCCccCcEEeCCCCcCcc
Q 003154 539 FKFLRVLDLGSLFLDQ-----YPAGIE-NLSRLRYLKLNIPSLKSL-PSSLLSNLLNLYTLDMPSSYIDH 601 (843)
Q Consensus 539 ~~~LrvL~L~~~~~~~-----lp~~i~-~L~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~ 601 (843)
++.|+.|+|++|.++. +...+. ...+|++|+|++|.++.. ...+...+.+|++|+|++|.+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 4567777777777652 222222 225777777777776532 12222445667777777776644
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=2.3e-07 Score=100.33 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=87.6
Q ss_pred hhHhhcCCCCCCeEEeecCCCCCCCceEeeccCCCCCCccEEEEecCCCCCCCccccc--CCCCCcEEEeec--ccccCC
Q 003154 674 LSKSLHGLSCLESLKLVNESKMPRLSKIVLFENQFPPSLTHLSFSNTDLIDDPMPTLE--KLPYLQVLKLKQ--NSYSGR 749 (843)
Q Consensus 674 l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~--~~~~~~ 749 (843)
+...+..+++|+.|.++++... .+.. + .. ++|++|.|..|.+.......++ .+|+|+.|+|+. +.+.+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~----~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK----K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS----C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc----c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 4556677788888888764211 1111 1 24 7899999988877554444444 689999999863 222221
Q ss_pred c-c-----ccCCCCCCcccEEEecCcccccccc---cccccccccceEeeecCCCCC----CCCccccCCCCCcEEEecC
Q 003154 750 K-L-----ACGSDGFPKLKVLHLKSMIWLEEWT---MGNEAMPKLECLVVNPCAYLK----RLPEHLWCMKNFKKLELWW 816 (843)
Q Consensus 750 ~-~-----~~~~~~f~~L~~L~L~~~~~l~~l~---~~~~~lp~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~ 816 (843)
. + ......||+|++|.|.+|....... .....+|+|++|+++.|..-. .++.++.++++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 1 1 1122458999999998876432221 122468999999998776322 2455566788999999988
Q ss_pred CC
Q 003154 817 PQ 818 (843)
Q Consensus 817 ~~ 818 (843)
|+
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 76
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.27 E-value=4.4e-07 Score=97.14 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=38.3
Q ss_pred CCceecchHHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|++..++++..++... ......+.|+|.+|+||||+|+.+++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 357999999999998887631 22346788999999999999999987
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=1.1e-06 Score=93.92 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=74.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-cCC-eeEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFD-CKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.+++|++..++.+.+++..+. .+.+.|+|.+|+||||+|+.+++. ... .+. ..+++..+...+... .+++++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 468999999999999998764 333899999999999999999883 321 121 233333333222211 1111111
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHHh-CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGYL-MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
+... ...+ .+++.+||+||++.. ..++.+...+.....++++|+||+...
T Consensus 96 ~~~~--------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 96 FAQK--------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HHHB--------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred HHhc--------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 1100 0011 356899999999763 344445444444445788888887643
No 165
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5.1e-06 Score=87.27 Aligned_cols=113 Identities=7% Similarity=0.029 Sum_probs=77.2
Q ss_pred ceecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccc-----CC--eeEEEEeCCCCChHHHH
Q 003154 176 DIVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-----FD--CKAWVPVSILYQPDSLL 246 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-----F~--~~~wv~~s~~~~~~~~~ 246 (843)
.+.|||++.++|...|... ......+-|+|.+|.|||++|+.|++. .... .. .++.+......+...+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 4889999999999888753 345778899999999999999999984 3221 11 25566666777888999
Q ss_pred HHHHHHhCCCCCCccccccchHHHHHHHHHHHH--hCCCeEEEEEcCCCCc
Q 003154 247 DNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGY--LMSKRYLIVLDDVWTN 295 (843)
Q Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~ 295 (843)
..|++++.+... ......+.+. ..+... -+++.+++|||++...
T Consensus 99 ~~I~~~L~g~~~---~~~~~~~~L~--~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 99 EKIWFAISKENL---CGDISLEALN--FYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHSCCC-----CCCCHHHHH--HHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHhcCCCC---CchHHHHHHH--HHHHHhhhccCCceEEEEecHHHh
Confidence 999999976421 0112223333 333322 2467899999999764
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=2.6e-06 Score=83.09 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-..++||++.++++.+.+..+. ...+.|+|.+|+||||||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987743 556789999999999999999883
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=3.9e-06 Score=89.71 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=74.7
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc-CC-eeEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY-FD-CKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.+++|++..++.+.+++..+. ...+.++|.+|+||||+|+.+++. +... +. ..+.+..+.....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~---------- 90 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI---------- 90 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH----------
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch----------
Confidence 469999999999999998764 444899999999999999999983 3221 11 1233332221000
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHH-----h-CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGY-----L-MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~-----l-~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
+.+. ..+... + .+++.+||+||++.. +.++.+...+.....++++|+||....
T Consensus 91 ---------------~~~~--~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 91 ---------------NVIR--EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp ---------------HTTH--HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ---------------HHHH--HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 1111 111111 1 267889999999754 456666665554455788999887653
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=7.1e-05 Score=82.23 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=63.6
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccc-ccccccccceE
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTM-GNEAMPKLECL 788 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L 788 (843)
..|+.+.+..+.. ......+..++.++.+.+....+.. ..+..+.+|+.+.+.+ .++.+.. .+..+.+|+.+
T Consensus 253 ~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 253 TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEE
T ss_pred ccceeEEcCCCcc-eeeccccccccccceeccCceeecc----cccccccccccccccc--ccceechhhhcCCCCCCEE
Confidence 5667777665532 2334456677888877776433221 2334578899998864 3555532 35678899999
Q ss_pred eeecCCCCCCCC-ccccCCCCCcEEEecC
Q 003154 789 VVNPCAYLKRLP-EHLWCMKNFKKLELWW 816 (843)
Q Consensus 789 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 816 (843)
.|... ++.++ ..+.+|++|+.+.+..
T Consensus 326 ~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 326 DLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred EeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 98643 66665 4678899999998853
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3.1e-06 Score=80.38 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=39.4
Q ss_pred CccEEEEecCCCCCCCcccccCCCCCcEEEeeccc-ccCCccccCCCC---CCcccEEEecCcccccccc-ccccccccc
Q 003154 711 SLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNS-YSGRKLACGSDG---FPKLKVLHLKSMIWLEEWT-MGNEAMPKL 785 (843)
Q Consensus 711 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~---f~~L~~L~L~~~~~l~~l~-~~~~~lp~L 785 (843)
.|+.|++++|.++......+..+++|+.|+|++|. +++..+...... .++|++|+|++|+++++-. ..+..+|+|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665554444555555555555555553 222211111110 1345555555555444321 112344555
Q ss_pred ceEeeecCCCCC
Q 003154 786 ECLVVNPCAYLK 797 (843)
Q Consensus 786 ~~L~l~~c~~l~ 797 (843)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555555444
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=3.7e-06 Score=90.77 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCCCCcEEEeecccccCCc--cccCCCCCCcccEEEecCcccccc-----cccccccccccceEeeecCCCCCCCCcccc
Q 003154 732 KLPYLQVLKLKQNSYSGRK--LACGSDGFPKLKVLHLKSMIWLEE-----WTMGNEAMPKLECLVVNPCAYLKRLPEHLW 804 (843)
Q Consensus 732 ~l~~L~~L~L~~~~~~~~~--~~~~~~~f~~L~~L~L~~~~~l~~-----l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~ 804 (843)
.+|+|+.|.|.+|.+.+.. .......+|+|++|+|+.|. +.. +...+..+++|+.|++++|.. . +.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i-~--d~~~~ 325 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYL-S--DEMKK 325 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBC-C--HHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcC-C--HHHHH
Confidence 4677777777766554311 11112347788888887654 443 233335688899999988863 2 12222
Q ss_pred CCCC--CcEEEecCCC
Q 003154 805 CMKN--FKKLELWWPQ 818 (843)
Q Consensus 805 ~l~~--L~~L~l~~~~ 818 (843)
.+.. ..++++++.+
T Consensus 326 ~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHCCSEEECCSBC
T ss_pred HHHHHcCCEEEecCCc
Confidence 2221 2567777655
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.92 E-value=5.2e-06 Score=80.48 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=39.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-..++||+.+++++.+.+.... ...+.|+|.+|+||||||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999997643 456789999999999999999873
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=4.7e-06 Score=81.02 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=67.6
Q ss_pred hHHHhccCCcccEEEcCCC-CCC-----CCchhccCCCCccEEEccCCCCcc-----cchhHhhCCccCcEEeCCCCcCc
Q 003154 532 SMKICKMFKFLRVLDLGSL-FLD-----QYPAGIENLSRLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPSSYID 600 (843)
Q Consensus 532 ~~~~~~~~~~LrvL~L~~~-~~~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~ 600 (843)
....+...+.|++|+|++| .++ .+...+....+|++|+|++|.|.. +...+ ...++|++|+|++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCC
Confidence 4556778889999999998 776 345667778889999999988873 33444 66688999999998876
Q ss_pred c-----cchhhhcccccccccc--cccccC
Q 003154 601 H-----TADDIWKLNKLRHLNF--GLITLP 623 (843)
Q Consensus 601 ~-----lp~~i~~L~~L~~L~L--~~~~l~ 623 (843)
. +...+...++|++|++ ++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4 4556777778888887 555554
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.87 E-value=1.5e-05 Score=78.56 Aligned_cols=121 Identities=18% Similarity=0.111 Sum_probs=64.9
Q ss_pred ceecch----HHHHHHHHHHHcCCCC--ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHH
Q 003154 176 DIVGLD----DKMEELLDHLIEGPPQ--LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNI 249 (843)
Q Consensus 176 ~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 249 (843)
++++.+ ..++.+.+++...... ...+.|+|.+|+||||||+.+++ ........++|++++ ++...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~ 97 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFREL 97 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHH
Confidence 455543 3445556666554322 26889999999999999999998 444444456666543 444444
Q ss_pred HHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHH--HHH-hcCCC-CCCcEEEEEecc
Q 003154 250 IKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEF--IQE-ILPDN-LNGSRVLTTVSN 320 (843)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~--l~~-~~~~~-~~gs~iiiTtR~ 320 (843)
....... +..... ..+ .+. -+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 98 ~~~~~~~---------~~~~~~--~~~----~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 98 KHSLQDQ---------TMNEKL--DYI----KKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHC---C---------CCHHHH--HHH----HHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHhccc---------hHHHHH--HHh----cCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 4332211 112222 222 222 38999999653 23321 211 11111 235678888874
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=1.3e-05 Score=76.17 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=66.0
Q ss_pred CCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccccc-ccc----ccccceEeeecCCCCCCCC-ccccCCC
Q 003154 734 PYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTMG-NEA----MPKLECLVVNPCAYLKRLP-EHLWCMK 807 (843)
Q Consensus 734 ~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~~-~~~----lp~L~~L~l~~c~~l~~lp-~~l~~l~ 807 (843)
.+|+.|++++|.++...+... .++++|++|+|++|..+++.... +.. .++|+.|+|++|+.++.-. ..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 479999999998776665443 57999999999999988865321 222 4689999999999877321 2466799
Q ss_pred CCcEEEecCCC
Q 003154 808 NFKKLELWWPQ 818 (843)
Q Consensus 808 ~L~~L~l~~~~ 818 (843)
+|++|++++||
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999998
No 175
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=5.9e-06 Score=80.30 Aligned_cols=112 Identities=12% Similarity=0.088 Sum_probs=82.2
Q ss_pred ccceeEEEeecC-CCCCCCCcchHHHhccCCcccEEEcCCCCCC-----CCchhccCCCCccEEEccCCCCcc-----cc
Q 003154 511 DSYLHSFLYLSP-ESDHLNPRDSMKICKMFKFLRVLDLGSLFLD-----QYPAGIENLSRLRYLKLNIPSLKS-----LP 579 (843)
Q Consensus 511 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp 579 (843)
.+.|++|.+.++ .........+...+...+.|++|+|++|.++ .+...+....+|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 677888888776 4421001133456677899999999999987 245566677899999999999884 44
Q ss_pred hhHhhCCccCcEEeC--CCCcCcc-----cchhhhcccccccccccccccC
Q 003154 580 SSLLSNLLNLYTLDM--PSSYIDH-----TADDIWKLNKLRHLNFGLITLP 623 (843)
Q Consensus 580 ~~i~~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~L~~~~l~ 623 (843)
..+ ...++|++|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 454 77789999999 7888754 4556677789999997777653
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=2.1e-05 Score=82.15 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|.+..++++.+.+... -....-+.|+|.+|+||||||+.+++
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999887541 12356689999999999999999988
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=2.8e-05 Score=75.09 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHcCC-CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC
Q 003154 180 LDDKMEELLDHLIEGP-PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK 258 (843)
Q Consensus 180 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 258 (843)
....++.+.+++..-. ..-..+.|+|.+|+||||||+.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 3444555555554322 2357899999999999999999998321122222 2333 344555555444332111
Q ss_pred CccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCC--chhhH--HHHHhcCC-CCCCcEEEEEecch
Q 003154 259 LSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWT--NDVWE--FIQEILPD-NLNGSRVLTTVSNI 321 (843)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~--~~~~~--~l~~~~~~-~~~gs~iiiTtR~~ 321 (843)
.... .. +. +.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 92 ---------~~~~--~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ---------TKFL--KT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---------SHHH--HH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ---------HHHH--HH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 22 22 445889999983 34443 22222221 12467888888754
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.73 E-value=3.3e-05 Score=71.62 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=35.9
Q ss_pred ceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 176 DIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++|++..++++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999988643222344679999999999999999984
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=0.0013 Score=72.13 Aligned_cols=285 Identities=10% Similarity=0.047 Sum_probs=143.9
Q ss_pred ceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCC---CCCCc-hhccCCCCccEEEccCCCCcccchhHhhCCcc
Q 003154 513 YLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLF---LDQYP-AGIENLSRLRYLKLNIPSLKSLPSSLLSNLLN 588 (843)
Q Consensus 513 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~---~~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 588 (843)
.|+++.+-..- ..+....|.+|.+|+.+.+..+. +..++ ..+..+..|+.+.+.. .++.++...|..+.+
T Consensus 65 ~L~sI~iP~sv-----t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDTV-----TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTTC-----CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTT
T ss_pred cCEEEEECCCe-----eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcc
Confidence 36666664321 23455678888888888887643 44433 3456677777776654 366666666677888
Q ss_pred CcEEeCCCCcCcccc-hhhhcccccccccccccc--cCCCCCCCCCCccccccccccCCCCCCccccCCCCCCceEeeec
Q 003154 589 LYTLDMPSSYIDHTA-DDIWKLNKLRHLNFGLIT--LPAHPGKYCSSLENLNFISALHPRCCTPDILGRLPKLGSLQICG 665 (843)
Q Consensus 589 L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~--l~~~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 665 (843)
|+.+.+..+ +..++ ..+..+.+|+.+.+..+- +....+ ..++|+++..-.. ....-...+..+.+|.......
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccce-eeeecccceecccccccccccceeeEeccccc-cccceeEEEECCc--ccccccchhhhccccceecccc
Confidence 888887543 34443 235567777777633210 000000 1223333321110 0000011134444454443332
Q ss_pred CCcchhhhhh-----------HhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCccEEEEecCCCCCCCcccccCC
Q 003154 666 DLNYYQSLLS-----------KSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSLTHLSFSNTDLIDDPMPTLEKL 733 (843)
Q Consensus 666 ~~~~~~~~l~-----------~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l 733 (843)
.......... ........+..+.+. .+++.+.- .+... .+|+.+.+..+. .......+.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-----~~v~~i~~~aF~~c-~~L~~i~lp~~~-~~I~~~aF~~c 287 (394)
T 4gt6_A 215 ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-----NGVARIETHAFDSC-AYLASVKMPDSV-VSIGTGAFMNC 287 (394)
T ss_dssp SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-----TTEEEECTTTTTTC-SSCCEEECCTTC-CEECTTTTTTC
T ss_pred cccccccceeecccccccccccccccccccceEEcC-----CcceEcccceeeec-ccccEEeccccc-ceecCcccccc
Confidence 0000000000 000001111222111 11111100 11122 456666665432 12233456778
Q ss_pred CCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccc-cccccccccceEeeecCCCCCCCCc-cccCCCCCcE
Q 003154 734 PYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWT-MGNEAMPKLECLVVNPCAYLKRLPE-HLWCMKNFKK 811 (843)
Q Consensus 734 ~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~ 811 (843)
++|+.+.+. +.+.. .....+.++.+|+.+.|.. .++.+. ..+..+.+|+.+.|-.+ ++.++. .+.+|++|+.
T Consensus 288 ~~L~~i~l~-~~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 288 PALQDIEFS-SRITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCCEEECC-TTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred cccccccCC-Ccccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 888888886 33321 1123345678899998864 355553 24567889999998643 566654 6889999999
Q ss_pred EEecCCCHH
Q 003154 812 LELWWPQPE 820 (843)
Q Consensus 812 L~l~~~~~~ 820 (843)
+++.+....
T Consensus 362 i~~~~~~~~ 370 (394)
T 4gt6_A 362 IEYSGSRSQ 370 (394)
T ss_dssp EEESSCHHH
T ss_pred EEECCceee
Confidence 999887633
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.67 E-value=2.6e-05 Score=82.86 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=72.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-cccCC-eeEEEEeCCCCChHHHHHHHHHH
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYV-KHYFD-CKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
.+++|++..++.+.+++..+. ...+.++|.+|+||||+|+.+++. . ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~---------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI---------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh----------
Confidence 468999999999999887654 334899999999999999999873 2 11111 1223333321110
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHH-----h-CCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGY-----L-MSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~-----l-~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
+... ..+... + .+++.++|+||+... +..+.+...+.....+.++|+||....
T Consensus 83 ---------------~~~~--~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 83 ---------------DVVR--HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp ---------------TTSS--HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ---------------HHHH--HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 0111 111111 1 256889999999654 345556666655556788888887644
No 181
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=4e-05 Score=78.41 Aligned_cols=80 Identities=21% Similarity=0.140 Sum_probs=61.6
Q ss_pred HhccCCcccEEEcCCCCCCCCc---hhccCCCCccEEEccCCCCcccchhHhhCCc--cCcEEeCCCCcCcc-cc-----
Q 003154 535 ICKMFKFLRVLDLGSLFLDQYP---AGIENLSRLRYLKLNIPSLKSLPSSLLSNLL--NLYTLDMPSSYIDH-TA----- 603 (843)
Q Consensus 535 ~~~~~~~LrvL~L~~~~~~~lp---~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~~-lp----- 603 (843)
...+++.|++|+|++|.+..++ ..+..+++|++|+|++|.|..+. .+ ..+. +|++|+|++|.+.. +|
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchhH
Confidence 3467889999999999887554 56678999999999999998773 33 5555 89999999998753 33
Q ss_pred --hhhhccccccccc
Q 003154 604 --DDIWKLNKLRHLN 616 (843)
Q Consensus 604 --~~i~~L~~L~~L~ 616 (843)
..+..+++|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 2366788888887
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.64 E-value=0.00018 Score=78.25 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=39.0
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|++..++.+.+.+..+. ....+.|+|.+|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999997654 2346789999999999999999873
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.60 E-value=7.8e-05 Score=78.82 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=70.3
Q ss_pred ceecchHHHHHHHHHHHcC-------------CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCCh
Q 003154 176 DIVGLDDKMEELLDHLIEG-------------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQP 242 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 242 (843)
+++|.+..+++|.+++... ......+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 6999999999998776421 234557899999999999999988873211222212223333311
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCC-----------CchhhHHHHHhcCCCCCC
Q 003154 243 DSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVW-----------TNDVWEFIQEILPDNLNG 311 (843)
Q Consensus 243 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw-----------~~~~~~~l~~~~~~~~~g 311 (843)
.+... .......... ..+... +.-+|++|++. +.+....+...+.....+
T Consensus 109 ---------~l~~~-----~~g~~~~~~~--~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 ---------DLVGQ-----YIGHTAPKTK--EVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp ---------GTCCS-----STTCHHHHHH--HHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred ---------Hhhhh-----cccccHHHHH--HHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 01100 0111112222 222222 33589999997 333445555555544556
Q ss_pred cEEEEEecch
Q 003154 312 SRVLTTVSNI 321 (843)
Q Consensus 312 s~iiiTtR~~ 321 (843)
..||.||...
T Consensus 170 ~~~i~~~~~~ 179 (309)
T 3syl_A 170 LVVILAGYAD 179 (309)
T ss_dssp CEEEEEECHH
T ss_pred EEEEEeCChH
Confidence 7888888654
No 184
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.50 E-value=0.00016 Score=74.35 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=35.9
Q ss_pred CceecchHHHHHHHHHHHc---CC-------CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE---GP-------PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++++.+++.. .. ...+-+.|+|.+|+|||++|+.+++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999988888766532 11 2345678999999999999999998
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.49 E-value=0.00012 Score=81.19 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=69.3
Q ss_pred cee-cchHH--HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCe--eEEEEeCCCCChHHHHHHHH
Q 003154 176 DIV-GLDDK--MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDC--KAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 176 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~~i~ 250 (843)
+|| |.... ...+..+...+.. ...+.|+|.+|+||||||+.+++ .....|.. +++++. ..+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHH
Confidence 344 64332 3344444444332 67799999999999999999998 45444422 444443 23444455
Q ss_pred HHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCch----hhHHHHHhcCC-CCCCcEEEEEecch
Q 003154 251 KFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTND----VWEFIQEILPD-NLNGSRVLTTVSNI 321 (843)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----~~~~l~~~~~~-~~~gs~iiiTtR~~ 321 (843)
..+.... . ..+...+..+.-+|++||+.... ..+.+...+.. ...|..||+||.+.
T Consensus 177 ~~~~~~~-------------~--~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 177 DSMKEGK-------------L--NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHTTC-------------H--HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHccc-------------H--HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4443211 1 23344444466799999996432 22333333321 13467899998763
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.46 E-value=0.00089 Score=71.60 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=39.4
Q ss_pred CCceecchHHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|++..++++..++... ......|.|+|.+|+|||+||+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 357999999999999988753 33456689999999999999999987
No 187
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=3e-05 Score=79.42 Aligned_cols=86 Identities=22% Similarity=0.128 Sum_probs=61.4
Q ss_pred ccCCcccE--EEcCCCCCCCCch----hccCCCCccEEEccCCCCcccc---hhHhhCCccCcEEeCCCCcCcccchhhh
Q 003154 537 KMFKFLRV--LDLGSLFLDQYPA----GIENLSRLRYLKLNIPSLKSLP---SSLLSNLLNLYTLDMPSSYIDHTADDIW 607 (843)
Q Consensus 537 ~~~~~Lrv--L~L~~~~~~~lp~----~i~~L~~Lr~L~L~~~~i~~lp---~~i~~~L~~L~~L~L~~~~l~~lp~~i~ 607 (843)
...+.|+. ++++.|....++. ...++++|+.|+|++|.|+.++ ..+ +.+++|++|+|++|.+..+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCc-hhhh
Confidence 33344444 4555554333332 1246889999999999998765 444 8999999999999999887 3355
Q ss_pred ccc--ccccccccccccCC
Q 003154 608 KLN--KLRHLNFGLITLPA 624 (843)
Q Consensus 608 ~L~--~L~~L~L~~~~l~~ 624 (843)
.+. +|+.|+|++|.+.+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp GGTTSCCSEEECTTSTTGG
T ss_pred hcccCCcceEEccCCcCcc
Confidence 555 89999988888764
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.43 E-value=0.00025 Score=75.55 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=72.7
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHh
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
-.+++|.+..++.+.+++..+. ...++-+.|.+|+||||+|+.+.+. ... ..+.+..+. ..... .++++...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~~~-i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKIDF-VRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCHHH-HHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCHHH-HHHHHHHH
Confidence 3579999999999999998654 3456778888999999999999873 321 233444332 11111 11111111
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCch---hhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 254 MPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTND---VWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~---~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
... ....+++.+||+||+.... ..+.+...+.....+.++|+||....
T Consensus 97 ~~~---------------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 97 ASA---------------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHB---------------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred Hhh---------------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 000 0012477899999998643 44445444433334678888887654
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.43 E-value=0.00019 Score=76.36 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=37.8
Q ss_pred CceecchHHHHHHHHHHHc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..+++|.+.+.. .....+-|-++|.+|+|||+||+.+++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999988731 122346789999999999999999998
No 190
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.37 E-value=0.00013 Score=67.44 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=34.3
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.++|++..++++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46899999999998887642112234779999999999999999984
No 191
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.35 E-value=0.00046 Score=71.34 Aligned_cols=47 Identities=26% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCceecchHHHHHHHHH-------HHcC-CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDH-------LIEG-PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~-------L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++|.+...++++.. +... ......+-|+|.+|+|||+||+.+++
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34688988887777763 3222 34567889999999999999999998
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.00024 Score=76.59 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=73.3
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCC-eeEEEEeCCCCChHHHHHHHHHH
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD-CKAWVPVSILYQPDSLLDNIIKF 252 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 252 (843)
-.+++|+++.++.+..++..+. ...+.++|.+|+||||+|+.+.+.......+. ....+..+.......+ ++.+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHH
Confidence 3578999999999999987764 22388999999999999999988411111122 1233333332222222 222221
Q ss_pred hCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 253 LMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
...... ..... ......-.+++-+|++|++... ...+.+...+.......++|++|...
T Consensus 113 ~~~~~~---~~~~~-------~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 113 FARLTV---SKPSK-------HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHHSCC---CCCCT-------THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred Hhhhcc---cccch-------hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 111000 00000 0001111245679999998643 34455555444334467788877544
No 193
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.32 E-value=0.00011 Score=74.17 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=39.9
Q ss_pred Cceecc---hHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeC
Q 003154 175 NDIVGL---DDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVS 237 (843)
Q Consensus 175 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s 237 (843)
.+++|. +..++.+..+...+ ....+.|+|.+|+||||||+.+++ ........+.|+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 456663 35556666666543 357788999999999999999998 343333445666654
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.00086 Score=71.11 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=37.3
Q ss_pred CceecchHHHHHHHHHHHc---------C-CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE---------G-PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.++.++.|.+.+.. + ....+-|.++|.+|+|||+||+.+++
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 4789999999998887642 1 12346788999999999999999998
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.24 E-value=0.0039 Score=68.15 Aligned_cols=303 Identities=10% Similarity=0.076 Sum_probs=165.3
Q ss_pred eEEEEEeeCCCCCcccccc--ccceeEEEeecCCCCCCCCcchHHHhccCCcccEEEcCCCCCCCCc-hhccCCCCccEE
Q 003154 492 VRRFCANVNLGELDSFDRL--DSYLHSFLYLSPESDHLNPRDSMKICKMFKFLRVLDLGSLFLDQYP-AGIENLSRLRYL 568 (843)
Q Consensus 492 ~r~Lsl~~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~~lp-~~i~~L~~Lr~L 568 (843)
+..+.+. +....--...+ |.+|+++.+..+.... ...+....|..+..|+.+.+..+ +..++ ..+..+.+|+.+
T Consensus 66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 5566665 33222112233 7899999887643211 13455678899999998887654 34333 456788999999
Q ss_pred EccCCCCcccchhHhhCCccCcEEeCCCCcCcccchhhhcccccccccccccc--cCCCCCCCCCCccccccccccCC--
Q 003154 569 KLNIPSLKSLPSSLLSNLLNLYTLDMPSSYIDHTADDIWKLNKLRHLNFGLIT--LPAHPGKYCSSLENLNFISALHP-- 644 (843)
Q Consensus 569 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~--l~~~~~~~l~~L~~L~~~~~~~~-- 644 (843)
.+.. .+..++...|..+.+|+.+.+..+ +..+........+|+.+.+..+- +....+..+.++...........
T Consensus 143 ~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 143 TIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 9975 466777777789999999999764 55554443344678877743321 11112224455544432111100
Q ss_pred CC-----------CCccccCCCCCCceEeeecCCcchhhhhhHhhcCCCCCCeEEeecCCCCCCCceEee-ccCCCCCCc
Q 003154 645 RC-----------CTPDILGRLPKLGSLQICGDLNYYQSLLSKSLHGLSCLESLKLVNESKMPRLSKIVL-FENQFPPSL 712 (843)
Q Consensus 645 ~~-----------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L 712 (843)
.. .... ......+..+.+.. .....-...+..+.+|+.+.+.. ++..+.- .+... ++|
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ip~---~v~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c-~~L 290 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIR-YPSQREDPAFKIPN---GVARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNC-PAL 290 (394)
T ss_dssp SSCEEEECTTSCEEEEE-CCTTCCCSEEECCT---TEEEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTC-TTC
T ss_pred cceeecccccccccccc-cccccccceEEcCC---cceEcccceeeecccccEEeccc-----ccceecCcccccc-ccc
Confidence 00 0000 11222333333321 11111123566778888887753 1222111 11223 566
Q ss_pred cEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccc-cccccccccceEeee
Q 003154 713 THLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWT-MGNEAMPKLECLVVN 791 (843)
Q Consensus 713 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~ 791 (843)
+.+.+... +..-....|.++++|+.+.|..+ +.. .-...+.++.+|+.+.|.. .++.+. ..+..+++|+.+.+.
T Consensus 291 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 291 QDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred ccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 77766532 33333457888999999999743 321 1123345688999999964 355553 345678999999998
Q ss_pred cCCCCCCCCccccCCCCCcEEEecCC
Q 003154 792 PCAYLKRLPEHLWCMKNFKKLELWWP 817 (843)
Q Consensus 792 ~c~~l~~lp~~l~~l~~L~~L~l~~~ 817 (843)
++... -..+..+.+|+.+.+...
T Consensus 366 ~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 366 GSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SCHHH---HHTCBCCCCC--------
T ss_pred Cceee---hhhhhccCCCCEEEeCCC
Confidence 76422 134667888888877543
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.24 E-value=0.0017 Score=68.22 Aligned_cols=46 Identities=28% Similarity=0.231 Sum_probs=38.0
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++++.+++... -...+.|.++|.+|+||||||+.+++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 46899999999998877531 23456789999999999999999998
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.22 E-value=0.00087 Score=74.28 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=38.6
Q ss_pred CCceecchHHH---HHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKM---EELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|.+..+ ..+...+..+. ...+.++|.+|+||||||+.+.+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 35689999888 77888887765 57889999999999999999998
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.21 E-value=0.00029 Score=76.04 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=38.0
Q ss_pred CceecchHHHHHHHHHHHc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++++.+.+.. .....+.|.|+|.+|+|||+||+.+++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988753 112356789999999999999999987
No 199
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.19 E-value=0.0025 Score=68.98 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=37.6
Q ss_pred CceecchHHHHH---HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEE---LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|++..++. +.+.+..+......+-|+|.+|+|||++|+.+.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999998776 45555555434468999999999999999999983
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.19 E-value=0.00045 Score=73.50 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCcccc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVM 263 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 263 (843)
...+..++..+......+.|+|.+|+||||||+.+++. ....-..+++++. .++..++...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-------
Confidence 44455555544334567899999999999999999983 3221112344442 33344444433211
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEEcCCCCch---h-hHHHHHhcCC-CCCCcEEEEEecch
Q 003154 264 EDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTND---V-WEFIQEILPD-NLNGSRVLTTVSNI 321 (843)
Q Consensus 264 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~---~-~~~l~~~~~~-~~~gs~iiiTtR~~ 321 (843)
.. ..+...+. +.-+|++||+.... . .+.+...+.. ...|..||+||...
T Consensus 88 --~~------~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 88 --TI------NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp --CH------HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred --cH------HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 01 12222222 35689999996532 2 2233333221 12356788888643
No 201
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.00077 Score=72.62 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=35.9
Q ss_pred CceecchHHHHHHHHHH-HcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHL-IEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+++ ..+. ... +.|+|..|+||||+|+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 46899999999998888 4433 233 89999999999999998876
No 202
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00065 Score=77.19 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCceecchHHHHHHHHHHHcC---------------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG---------------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|++..++++.+++... .+..+.+.|+|.+|+||||+|+.+++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999751 013478999999999999999999983
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.0011 Score=67.94 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=34.7
Q ss_pred CceecchHHHHHHHHHHH---cC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLI---EG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++++.+.+. .. ....+-+.|+|.+|+||||||+.+++
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 478999988888766543 21 11234588999999999999999998
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.10 E-value=0.0019 Score=71.75 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=37.5
Q ss_pred CceecchHHHHHHHHHHHc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+.+.. .....+-|.++|.+|+|||+||+.+++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999887732 112346788999999999999999998
No 205
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.08 E-value=0.00062 Score=73.29 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.2
Q ss_pred CceecchHHHHHHHHHHHcC----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEG----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+..++.|.+.+... ....+-|.++|.+|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999998877321 122345889999999999999999983
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.07 E-value=0.0017 Score=68.05 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=37.8
Q ss_pred CceecchHHHHHHHHHHHcC----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG----------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+.+.+..+ ......+.|+|.+|+||||+|+.+++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 46899999999999887431 12356789999999999999999988
No 207
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.04 E-value=0.00082 Score=73.45 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=38.1
Q ss_pred CCceecchHHHHHHHHHHHcC----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG----------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|.+..++.+.+++... ....+-|.|+|.+|+|||+||+.+++
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999887321 12246789999999999999999987
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.0015 Score=70.01 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=37.2
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++.+...+..+. ...+.++|.+|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999988888764 33389999999999999999987
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.00037 Score=73.42 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHcCCC-CceEEEEEcCCCChHHHHHHHHhcCcccc-ccCCeeEEEEe
Q 003154 181 DDKMEELLDHLIEGPP-QLSVVAVLDSVGLDKTAFAAEAYNSNYVK-HYFDCKAWVPV 236 (843)
Q Consensus 181 ~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~ 236 (843)
...++.+.+++..... ....+.++|.+|+|||+||+.+++. .. ..-..+.++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 3445556667765322 2467889999999999999999983 33 33234555554
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.86 E-value=0.00095 Score=70.42 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=43.9
Q ss_pred CceecchHHHHHHHHHHHcCC-------CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC
Q 003154 175 NDIVGLDDKMEELLDHLIEGP-------PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI 238 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 238 (843)
..++|.+..++.+...+.... .....+.++|.+|+||||+|+.+++ .....-...+.+..+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 468899999999988876531 1246899999999999999999988 3322212244555543
No 211
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.82 E-value=0.019 Score=62.19 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=57.5
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCcccccccc-cccccccccceE
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWT-MGNEAMPKLECL 788 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L 788 (843)
.+|+.+.+..+ ++......+.++.+|+.+.+.. .+.. .....+.++++|+.+.+.+.. ++.++ ..+..+++|+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~-i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKT-VPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSE-ECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC-ccEeCccccceeehhccccccc-ccee-ccccccccccccccccccccc-cceehhhhhcCCCCCCEE
Confidence 56666666544 2222334566777777777752 2221 112233457778888876532 44443 234567778888
Q ss_pred eeecCCCCCCCCc-cccCCCCCcEEEec
Q 003154 789 VVNPCAYLKRLPE-HLWCMKNFKKLELW 815 (843)
Q Consensus 789 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 815 (843)
.|... ++.++. .+.+|++|+++.+-
T Consensus 316 ~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 77532 555543 56778888877763
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.82 E-value=0.0018 Score=66.47 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++|.+..+.++.+.+..-......|-|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35889999999988877642222345779999999999999999984
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.79 E-value=0.002 Score=72.13 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=37.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997644 33457999999999999999987
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.78 E-value=0.0014 Score=79.40 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=39.0
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-..++||+++++++++.|.... ..-+.++|.+|+||||+|+.+++.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999997754 344688999999999999999883
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.67 E-value=0.0022 Score=71.23 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred CceecchHHHHHHHHHHHc---C-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE---G-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.++.++++.+.+.. . -.-.+-|.++|.+|.||||||+.+++
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689999988887766432 1 11123478999999999999999998
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.66 E-value=0.00037 Score=71.92 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=35.5
Q ss_pred CceecchHHHHHHHHHHHc----------CCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIE----------GPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+..++++.+.+.. +....+-+.|+|.+|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 5689999988888876641 1111233779999999999999999983
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0091 Score=62.45 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCc-ccc-ccCCeeEEEEeCC-CCChHHHHHHHHHHhCC
Q 003154 179 GLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSN-YVK-HYFDCKAWVPVSI-LYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~-~~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 255 (843)
|-++.++.+.+.+..+. ....-++|.+|+||||+|+.+.+.. ... .+.|. .++..+. ...+.++ +++++.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhh
Confidence 34556677777777665 6788999999999999999997631 011 23333 4444332 2232222 333333322
Q ss_pred CCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 256 SSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
.. ..+++-++|+|++... +..+.+...+....+.+.+|++|.+.
T Consensus 77 ~p----------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 77 SP----------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp CC----------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cc----------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 10 1245678899999754 45666666665555678888877554
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.61 E-value=0.0049 Score=64.64 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=37.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|++..+.++.+.+..-......|-|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999998866333344577999999999999999987
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.56 E-value=0.0019 Score=72.23 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=38.1
Q ss_pred CceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++++.+++... .....-|-|+|.+|+|||++|+.+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999998887542 23355688999999999999999988
No 220
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.56 E-value=0.088 Score=56.83 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=54.6
Q ss_pred CCccEEEEecCCCCCCCcccccCCCCCcEEEeecccccCCccccCCCCCCcccEEEecCccccccccc-ccccccccceE
Q 003154 710 PSLTHLSFSNTDLIDDPMPTLEKLPYLQVLKLKQNSYSGRKLACGSDGFPKLKVLHLKSMIWLEEWTM-GNEAMPKLECL 788 (843)
Q Consensus 710 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~f~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L 788 (843)
.+|+.+.+..+ +.......+..+++|+.+.+.++.+... -...+.++.+|+.+.|.. .++.+.. .+..+++|+.+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCC
T ss_pred ehhcccccccc-ceecccccccccccccccccccccccee-hhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEE
Confidence 56777777544 3333345678899999999975544321 122345678899998863 3555532 34567778777
Q ss_pred eeecCCCCCCCCc-cccCCC
Q 003154 789 VVNPCAYLKRLPE-HLWCMK 807 (843)
Q Consensus 789 ~l~~c~~l~~lp~-~l~~l~ 807 (843)
.+... ++.+.. .+.+++
T Consensus 339 ~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 339 SYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp CCCTT--CCEECTTTTTTSS
T ss_pred EECCc--cCEEchhHhhCCC
Confidence 76432 444432 344443
No 221
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0052 Score=67.17 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=37.4
Q ss_pred CceecchHHHHHHHHHHHc-----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE-----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+.- +-...+=|-++|.+|.|||+||+++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4678999999988876643 123457788999999999999999998
No 222
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.48 E-value=0.019 Score=61.09 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 181 DDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 181 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
++..+.+.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH
Confidence 455666777766543 3457889999999999999988763
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.44 E-value=0.017 Score=69.04 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999997653 44567999999999999999987
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.34 E-value=0.013 Score=57.84 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-----Cccccccch---H
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-----LSEVMEDRD---Y 268 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~---~ 268 (843)
.-.++.|+|.+|+||||||..+.. ..=..++|++....++...+.. +.+..+...+ ..-....+. .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 356899999999999999999986 1124688888776566655443 3333322100 000001111 2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 269 EMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 269 ~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
+.. ..++..++.+.-+||+|.+-.
T Consensus 93 ~~~--~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVI--GSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHH--HHHHHHCCTTEEEEEEECCCC
T ss_pred HHH--HHHHHHhhcCCCEEEEcCcHH
Confidence 233 444555544567899998754
No 225
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0027 Score=65.93 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe--CCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV--SILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (843)
-+++.|+|++|+||||||.++... .-..++|+++ ++..+. ...+.+... ..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l--~~ 175 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFV--DD 175 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHH--HH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHH--HH
Confidence 456789999999999999999873 1223567776 333111 012334444 56
Q ss_pred HHHHhCCCeEEEEEcCCCC
Q 003154 276 LHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 276 l~~~l~~kr~LlVlDdvw~ 294 (843)
+.+.+...+ +||+|++..
T Consensus 176 i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHHHCS-EEEEECCTT
T ss_pred HHHHHhhCC-EEEEecccc
Confidence 666666556 999999954
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.12 E-value=0.0083 Score=71.55 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=38.5
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..+|||+.+++++.+.|.... ..-+.++|.+|+||||+|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997744 334679999999999999999873
No 227
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.08 E-value=0.0077 Score=54.18 Aligned_cols=55 Identities=25% Similarity=0.275 Sum_probs=46.0
Q ss_pred cEEEcCCCCCC--CCchhccCCCCccEEEccCCCCcccchhHhhCCccCcEEeCCCCcC
Q 003154 543 RVLDLGSLFLD--QYPAGIENLSRLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPSSYI 599 (843)
Q Consensus 543 rvL~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 599 (843)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|..+|..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888887 8886544 3689999999999999998888899999999998855
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0098 Score=64.23 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=36.9
Q ss_pred CceecchHHHHHHHHHHHc----C-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----G-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+.- + -...+=|-++|.+|.|||.||+++++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 4678999999988876542 1 23456788999999999999999998
No 229
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0052 Score=66.09 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=37.1
Q ss_pred CceecchHHHHHHHHHHHc-----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE-----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+.- +-...+=|-++|.+|.|||.||+++++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4688999999998876543 123356688999999999999999998
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.007 Score=66.02 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=37.6
Q ss_pred CceecchHHHHHHHHHHHc-----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE-----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+.. +-...+=|-++|.+|.|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999998886643 223456688999999999999999998
No 231
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.94 E-value=0.014 Score=65.04 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=36.5
Q ss_pred CceecchHHHHHHHH---HHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLD---HLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.++.++.+.. ++..+....+-+-++|.+|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 679999999886554 44444433456889999999999999999983
No 232
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0066 Score=66.25 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=37.3
Q ss_pred CceecchHHHHHHHHHHHc-----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE-----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+.- +-...+=|-++|.+|.|||+||+++++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4688999999998876532 223467788999999999999999998
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.84 E-value=0.0056 Score=63.83 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
....+.++|.+|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999998
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.78 E-value=0.015 Score=69.28 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=37.8
Q ss_pred CceecchHHHHHHHHHHHcCC-------CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGP-------PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.+..++.+...+.... .....+-++|.+|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999988876421 2234799999999999999999988
No 235
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0074 Score=65.91 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=37.3
Q ss_pred CceecchHHHHHHHHHHHc----C-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----G-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+.. + -...+=|-++|++|.|||.||+++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4688999999998876432 1 23466788999999999999999998
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.70 E-value=0.027 Score=62.86 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCceecchHHHHHHHHHHH---cCC-------CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLI---EGP-------PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|.++.++++.+... ... .-.+=+.|+|.+|+||||||+.++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999988887776543 210 11223899999999999999999983
No 237
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.56 E-value=0.024 Score=60.30 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCc-cccccchHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLS-EVMEDRDYEMRKIIH 275 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ 275 (843)
.-.++.|+|.+|+||||||.++... ....=..++|++....++.. .+++++...+.. -....+.++.. ..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l--~~ 130 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQAL--EI 130 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHH--HH
Confidence 4579999999999999999999873 22222347888877766654 455565432100 01233445555 55
Q ss_pred HHHHhC-CCeEEEEEcCCCC
Q 003154 276 LHGYLM-SKRYLIVLDDVWT 294 (843)
Q Consensus 276 l~~~l~-~kr~LlVlDdvw~ 294 (843)
+...++ .+.-++|+|.+-.
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTT
T ss_pred HHHHhhhcCCCeEEehHhhh
Confidence 555543 4455888998743
No 238
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.54 E-value=0.025 Score=58.22 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=33.2
Q ss_pred CceecchHHHHHHHHHHHcC------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG------------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|.++.+++|.+.+... ..... +.++|.+|.||||||+.++.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 46889898888887754311 11122 99999999999999999998
No 239
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.48 E-value=0.16 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 240
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.46 E-value=0.022 Score=56.70 Aligned_cols=117 Identities=15% Similarity=-0.004 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCc---c-------------
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLS---E------------- 261 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~------------- 261 (843)
-.+++|+|.+|+|||||++.+... ....=..++|+.... ....+...+. .++...... .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 468999999999999999999863 221112456665433 3444443332 333211000 0
Q ss_pred ---ccccchHHHHHHHHHHHHhC---CCeEEEEEcCCC-----CchhhHHHHHhcCC--CCCCcEEEEEecch
Q 003154 262 ---VMEDRDYEMRKIIHLHGYLM---SKRYLIVLDDVW-----TNDVWEFIQEILPD--NLNGSRVLTTVSNI 321 (843)
Q Consensus 262 ---~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw-----~~~~~~~l~~~~~~--~~~gs~iiiTtR~~ 321 (843)
....+.+++. ..+...+. -+..+||+|..- +......+...+.. ...|..||+||...
T Consensus 98 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELV--NKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHH--HHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHH--HHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0111344544 44544442 234599999986 32222333322221 12477888888765
No 241
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.36 E-value=0.0083 Score=63.83 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=36.8
Q ss_pred CceecchHHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.+..++.+...+..+ +.....+.++|.+|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46789888888877766543 23356799999999999999999998
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.31 E-value=0.012 Score=69.23 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=59.0
Q ss_pred CceecchHHHHHHHHHHHc----C-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChH
Q 003154 175 NDIVGLDDKMEELLDHLIE----G-------PPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPD 243 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 243 (843)
.++.|.++.+++|.+++.- + -...+=|-++|.+|.|||+||+.+++. ...+| +.|..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 4678999998888876532 2 124567889999999999999999994 33332 333221
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 244 SLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
++ . .. .....+..+. ..+....+....+|++|++..
T Consensus 273 ~l----~---sk------~~gese~~lr--~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 EI----M---SK------LAGESESNLR--KAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp HH----H---SS------CTTHHHHHHH--HHHHHHTTSCSEEEEEESGGG
T ss_pred Hh----h---cc------cchHHHHHHH--HHHHHHHHcCCeEEEEehhcc
Confidence 11 1 11 1112233344 444445567789999999863
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.29 E-value=0.048 Score=54.64 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccc----cCCeeEEEEeCCCCChHHHHHHHHHHhCCCC-----CCccccccch
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKH----YFDCKAWVPVSILYQPDSLLDNIIKFLMPSS-----KLSEVMEDRD 267 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 267 (843)
.-.+++|+|.+|+|||||++.+........ .-..++|+.....++...+. ++++.++... ...-....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 356999999999999999999886311111 12568888877765555443 3445554321 0000011222
Q ss_pred HHHH-HHHHHHHHhC-CCeEEEEEcCCCC
Q 003154 268 YEMR-KIIHLHGYLM-SKRYLIVLDDVWT 294 (843)
Q Consensus 268 ~~~~-~~~~l~~~l~-~kr~LlVlDdvw~ 294 (843)
.+.. ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2221 0033444553 4667889999853
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.28 E-value=0.0095 Score=71.14 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred CceecchHHHHHHHHHHHc-----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE-----------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+..++++.+++.. +-....-|.|+|.+|+||||||+.+.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5689999999999888754 123356799999999999999999988
No 245
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.27 E-value=0.017 Score=56.31 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHcC-CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 180 LDDKMEELLDHLIEG-PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 180 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
|++.++++.+.+... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566777888877753 23568999999999999999999876
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.24 E-value=0.013 Score=57.59 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555565554334578999999999999999999987
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.16 E-value=0.0095 Score=62.46 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=37.4
Q ss_pred CceecchHHHHHHHHHHHcC------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG------------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.+..++.+...+... .....-+.++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999998887641 12245677999999999999999988
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.13 E-value=0.013 Score=58.04 Aligned_cols=114 Identities=15% Similarity=-0.025 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLH 277 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 277 (843)
-.++.|+|..|.||||++..+.. +...+-..++.+..... .. -..+|+..++..... ......+++. +.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~--~~~~~~~~i~--~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPS--VEVESAPEIL--NYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCC--EEESSTHHHH--HHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccc--cccCCHHHHH--HHHH
Confidence 46888999999999999988877 34333333444432221 11 112344444432111 1223344555 6666
Q ss_pred HHhCCCeE-EEEEcCCCCc--hhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 278 GYLMSKRY-LIVLDDVWTN--DVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 278 ~~l~~kr~-LlVlDdvw~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
+.+.+.++ +||+|.+... +..+.+.. +.+ .|-.||+|-+..+.
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 66655555 9999999643 34444433 222 26789999886543
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.13 E-value=0.037 Score=58.94 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCC-ccccccchHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKL-SEVMEDRDYEMRKIIH 275 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~ 275 (843)
.-.++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++...+. .-....+.++.. ..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l--~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQAL--EI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHH--HH
Confidence 4568999999999999999998863 22222458899988766643 24455432110 001222344544 44
Q ss_pred HHHHhC-CCeEEEEEcCCC
Q 003154 276 LHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 276 l~~~l~-~kr~LlVlDdvw 293 (843)
+....+ .+--+||+|.+-
T Consensus 131 ~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHHTTTCCSEEEEECGG
T ss_pred HHHHHhcCCCCEEEEcChH
Confidence 544443 345589999874
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.12 E-value=0.034 Score=67.16 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=37.3
Q ss_pred CceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.+..++.+...+... ......+.|+|.+|+|||++|+.+.+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999988877542 12246889999999999999999987
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.10 E-value=0.22 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.10 E-value=0.042 Score=58.80 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-CccccccchHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-LSEVMEDRDYEMRKIIH 275 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~ 275 (843)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .++.++...+ ..-....+.+++. ..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l--~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQAL--EI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHH--HH
Confidence 3568888999999999999888763 22222468999988776644 2444443211 0001223445555 56
Q ss_pred HHHHhCC-CeEEEEEcCCC
Q 003154 276 LHGYLMS-KRYLIVLDDVW 293 (843)
Q Consensus 276 l~~~l~~-kr~LlVlDdvw 293 (843)
+....+. +--+||+|.+-
T Consensus 144 l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHHTTTCCSEEEEECTT
T ss_pred HHHHHhcCCCCEEEEeChH
Confidence 6655543 44589999884
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.08 E-value=0.03 Score=59.75 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCC-ccccccchHHHHHHHH
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKL-SEVMEDRDYEMRKIIH 275 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~ 275 (843)
.-.++.|.|.+|+||||||.++... ....=..++|++....++.. .++.++...+. .-....+.+++. ..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~--~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQAL--EI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHH--HH
Confidence 4568999999999999999988863 22222368899988777643 24455432110 001122334444 44
Q ss_pred HHHHhC-CCeEEEEEcCCC
Q 003154 276 LHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 276 l~~~l~-~kr~LlVlDdvw 293 (843)
+....+ .+--+||+|.+-
T Consensus 133 ~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHHTCCSEEEEECGG
T ss_pred HHHHHhccCCCEEEEcCHH
Confidence 444432 344589999873
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.02 E-value=0.068 Score=56.89 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccc----cCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH----YFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
..-.++.|+|.+|+||||||.+++....... .=..++|++....++...+. ++++.++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 4467999999999999999998876422211 12468999988887776654 34555543
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.98 E-value=0.05 Score=57.43 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccc----CCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-----Cccccccch
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHY----FDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-----LSEVMEDRD 267 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~ 267 (843)
.-.++.|+|.+|+||||||.++......... =..++|++....++..++. ++++.++...+ ..-....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3568999999999999999988763211111 2468999988888777665 34555543210 000011122
Q ss_pred H---HHHHHHHHHHHhC--CCeEEEEEcCCC
Q 003154 268 Y---EMRKIIHLHGYLM--SKRYLIVLDDVW 293 (843)
Q Consensus 268 ~---~~~~~~~l~~~l~--~kr~LlVlDdvw 293 (843)
+ ++. ..+...++ .+--+||+|.+-
T Consensus 185 ~~~~~~l--~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIV--DDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHH--HHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHH--HHHHHHHHhccCCCEEEEeCcH
Confidence 2 223 44555553 456788999883
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.91 E-value=0.038 Score=53.05 Aligned_cols=116 Identities=15% Similarity=-0.038 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC---CCChHHHHHHHHHHhCC----CCCCccccc------
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI---LYQPDSLLDNIIKFLMP----SSKLSEVME------ 264 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~~----~~~~~~~~~------ 264 (843)
-..|-|++-.|.||||.|-...- +..++=-.+.++..-+ ..+..+++ +.+.. ......+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 34667777777999999977766 3332212344443332 22333333 33320 000000111
Q ss_pred -cchHHHHHHHHHHHHhCCCeE-EEEEcCCCC-----chhhHHHHHhcCCCCCCcEEEEEecch
Q 003154 265 -DRDYEMRKIIHLHGYLMSKRY-LIVLDDVWT-----NDVWEFIQEILPDNLNGSRVLTTVSNI 321 (843)
Q Consensus 265 -~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~-----~~~~~~l~~~~~~~~~gs~iiiTtR~~ 321 (843)
....... ...++.+.+.+| |||||++-. ....+.+...+.......-||+|+|..
T Consensus 102 ~~~a~~~l--~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVW--QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHH--HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHH--HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1112223 556666665555 999999833 233445555554444567899999985
No 257
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.75 E-value=0.0083 Score=63.60 Aligned_cols=51 Identities=8% Similarity=-0.146 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc---cCCeeEEEEeCCCC
Q 003154 186 ELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH---YFDCKAWVPVSILY 240 (843)
Q Consensus 186 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~ 240 (843)
++++.+..-. .-..++|+|..|+|||||++.+.+ .+.. .++ ++++-+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEEecCCh
Confidence 3445444322 245899999999999999999887 2322 233 3356677553
No 258
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.72 E-value=0.025 Score=64.28 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=36.1
Q ss_pred CceecchHHHHHHHHHHHc----CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|.+.-++.+.+.+.- ......++.++|.+|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4588988888887665432 122456899999999999999999988
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.72 E-value=0.015 Score=55.08 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=53.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCC-cc-----ccccchHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKL-SE-----VMEDRDYEMRK 272 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~-----~~~~~~~~~~~ 272 (843)
.+|+|.|++|+||||+|+.+ . +.. |. ++. ..++.++....-+..... .. ..........
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~--~~g--~~---~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 66 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K--ERG--AK---VIV------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVA- 66 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H--HTT--CE---EEE------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHH-
T ss_pred cEEEEECCCCCCHHHHHHHH-H--HCC--Cc---EEE------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHH-
Confidence 47999999999999999999 4 221 21 222 234444444332210000 00 0000112223
Q ss_pred HHHHHHHh-CCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 273 IIHLHGYL-MSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 273 ~~~l~~~l-~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
..+.+.+ ....-.+|+|.+....+++.+..... ....+|.-..+.++
T Consensus 67 -~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~ 114 (179)
T 3lw7_A 67 -RLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKI 114 (179)
T ss_dssp -HHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHH
T ss_pred -HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHH
Confidence 4455555 23344578899966666666665543 23345544444433
No 260
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.69 E-value=0.031 Score=57.90 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=34.5
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHhcCccccc-cCCeeEEEEeCCCCChHHHHHHHH
Q 003154 194 GPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFDCKAWVPVSILYQPDSLLDNII 250 (843)
Q Consensus 194 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~ 250 (843)
......+|+|+|..|+||||||+.+..-..... ....+..|+...-+-.......+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 345678999999999999999998877311111 123344445444333334444443
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.65 E-value=0.054 Score=57.16 Aligned_cols=94 Identities=10% Similarity=0.079 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccc---------cC-----CeeEEEEeCCCCChHHHHHHHHHHhCCCCC----
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKH---------YF-----DCKAWVPVSILYQPDSLLDNIIKFLMPSSK---- 258 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---- 258 (843)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++..++.+ +++.++...+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999998876322111 11 3689999888887776663 4555654210
Q ss_pred -CccccccchH---HHHHHHHHHHHhC--CCeEEEEEcCCC
Q 003154 259 -LSEVMEDRDY---EMRKIIHLHGYLM--SKRYLIVLDDVW 293 (843)
Q Consensus 259 -~~~~~~~~~~---~~~~~~~l~~~l~--~kr~LlVlDdvw 293 (843)
..-....+.+ ++. ..+.+.++ .+--+||+|.+-
T Consensus 176 ~l~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFA--EKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHH--HTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHH--HHHHHHHhhccCccEEEEECcH
Confidence 0001112222 233 44555554 345688999883
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.60 E-value=0.12 Score=53.45 Aligned_cols=87 Identities=6% Similarity=0.032 Sum_probs=54.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCCCCChHHHHHHHHHHhCCCCCC-ccccccchHHH-HHHHH
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSILYQPDSLLDNIIKFLMPSSKL-SEVMEDRDYEM-RKIIH 275 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~~~~~ 275 (843)
++-|.|.+|+||||||.++... ....+ ..++|++....++.. .+++++...+. --....+.++. . ..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l--~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRI--DM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHH--HH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHH--HH
Confidence 7899999999999999888763 33332 358899888877754 36677653211 00123344444 3 22
Q ss_pred HHHH--h-CCCeEEEEEcCCCCc
Q 003154 276 LHGY--L-MSKRYLIVLDDVWTN 295 (843)
Q Consensus 276 l~~~--l-~~kr~LlVlDdvw~~ 295 (843)
+... + +++.-|||+|-|-..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHhhccCceEEEEeccccc
Confidence 2222 3 456789999998543
No 263
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.58 E-value=0.026 Score=54.37 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHhccCCcccEEEcCCC-CCC-----CCchhccCCCCccEEEccCCCCc-----ccchhHhhCCccCcEEeCCCCcCc
Q 003154 533 MKICKMFKFLRVLDLGSL-FLD-----QYPAGIENLSRLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPSSYID 600 (843)
Q Consensus 533 ~~~~~~~~~LrvL~L~~~-~~~-----~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~ 600 (843)
...+.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.|. .+-..+ ..-+.|++|+|++|.|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCC
Confidence 344555677778887764 554 23344555566777777777665 222222 44566666666666654
No 264
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.56 E-value=0.27 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 265
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.51 E-value=0.029 Score=50.31 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=46.8
Q ss_pred cEEEccCCCCc--ccchhHhhCCccCcEEeCCCCcCcccchh-hhcccccccccccccccC
Q 003154 566 RYLKLNIPSLK--SLPSSLLSNLLNLYTLDMPSSYIDHTADD-IWKLNKLRHLNFGLITLP 623 (843)
Q Consensus 566 r~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~ 623 (843)
..++.+++.++ .+|..+ -.+|++|+|++|.|..+|.+ +..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888899998 999754 45799999999999999765 678999999998888765
No 266
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.49 E-value=0.024 Score=61.06 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=36.4
Q ss_pred ceecchHHHHHHHHHHHc-------------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 176 DIVGLDDKMEELLDHLIE-------------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 176 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++|.+..++.+...+.. .......|.++|.+|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 579999999999888731 111345688999999999999999998
No 267
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.39 E-value=0.052 Score=59.48 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=34.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccC-CeeEEEEeCCCC-ChHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYF-DCKAWVPVSILY-QPDSLLDNII 250 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~ 250 (843)
+.++|+|..|+|||||++.+..+ ....+ +.++++-+.+.. ...++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 35899999999999999999874 33323 456677777654 3444554443
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.35 E-value=0.018 Score=54.37 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.32 E-value=0.018 Score=54.76 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.31 E-value=0.021 Score=55.02 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 271
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.20 E-value=0.04 Score=58.05 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=33.1
Q ss_pred eecchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 177 IVGLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 177 ~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|+.+.-.+++++.+... .+....|.|+|++|+||||+++.++.
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 355566677777776532 23467799999999999999999887
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.14 E-value=0.023 Score=54.00 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.13 E-value=0.021 Score=55.59 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.10 E-value=0.042 Score=61.42 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=37.3
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 468999999999888887653 6789999999999999999983
No 275
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.07 E-value=0.031 Score=59.20 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=36.6
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|+++.++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 468999999999988887643 578899999999999999987
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.01 E-value=0.38 Score=52.46 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888875
No 277
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.89 E-value=0.023 Score=53.72 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 278
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.87 E-value=0.033 Score=56.51 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=33.4
Q ss_pred CceecchHHHHHHHHHHHc--C-------C-CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIE--G-------P-PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.++.++++.+.... . + .-.+=+.|+|.+|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688988877776654431 1 0 00122899999999999999999983
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.85 E-value=0.038 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 280
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.83 E-value=0.031 Score=58.60 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.+||+|.|-|||||||.|..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 589999999999999997766654
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.75 E-value=0.028 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.75 E-value=0.027 Score=53.89 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 283
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.70 E-value=0.11 Score=53.90 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+++|+|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.67 E-value=0.032 Score=53.25 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-++++|+|..|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 285
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.66 E-value=0.11 Score=57.06 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHH
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKF 252 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 252 (843)
+++.|..-. +=+-++|.|..|+|||+|+..+.+. ..+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 344444321 2356899999999999999988873 123345788888888765 455666666653
No 286
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.59 E-value=0.014 Score=55.99 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966655
No 287
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.56 E-value=0.05 Score=58.78 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=36.1
Q ss_pred CceecchHHHHHHHHHHHc----------------------------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 175 NDIVGLDDKMEELLDHLIE----------------------------GPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++|.+..++.|...+.. .......+.++|.+|+||||+|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4689999999998877721 011234688999999999999999998
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.53 E-value=0.032 Score=53.67 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 289
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.52 E-value=0.035 Score=56.27 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999976
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.51 E-value=0.052 Score=54.66 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+.++............+|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444444433333567899999999999999999976
No 291
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.50 E-value=0.17 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 468999999999999999999887
No 292
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.47 E-value=0.024 Score=52.29 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-..++|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.46 E-value=0.043 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+|+|+.|.||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 294
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.43 E-value=0.042 Score=56.62 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=34.3
Q ss_pred CCceecchHHHHHHHHHHHcC---------C-CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG---------P-PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|.++.++++.+....- + .-.+=+.|+|.+|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 347899988877776654321 0 00112899999999999999999983
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.42 E-value=0.04 Score=52.96 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.41 E-value=0.041 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997654
No 297
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.41 E-value=0.086 Score=57.59 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHHHHHH
Q 003154 186 ELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDNIIKF 252 (843)
Q Consensus 186 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 252 (843)
++++.|..-. +=+-++|+|..|+|||+|++.+.+. ..+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~-~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINN-VAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHH-TTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHh-hHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3455554311 2357899999999999999998873 123344677888888764 455676766654
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.38 E-value=0.038 Score=53.19 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.36 E-value=0.024 Score=60.47 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCC-Cccc-cccchHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSK-LSEV-MEDRDYEMRKIIH 275 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~~~~ 275 (843)
-.+++|+|..|.|||||.+.+.. .+.......++ ++.++.... ...... ..+. ...+..... ..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~--~~ 188 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFV---------HESKKCLVNQREVHRDTLGFS--EA 188 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSC---------CCCSSSEEEEEEBTTTBSCHH--HH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhh---------hhccccceeeeeeccccCCHH--HH
Confidence 34999999999999999999876 33322223222 222221100 000000 0000 011123345 67
Q ss_pred HHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 276 LHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 276 l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
|...|....=+|++|.+-+.+.++.+.... ..|-.||+||-..+.+
T Consensus 189 La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 888888888899999999877777655442 2356688888766543
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.36 E-value=0.027 Score=54.85 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 301
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.36 E-value=0.076 Score=51.12 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=46.8
Q ss_pred ccceeEEEeecC-CCCCCCCcchHHHhccCCcccEEEcCCCCCC-----CCchhccCCCCccEEEccCCCCcc-----cc
Q 003154 511 DSYLHSFLYLSP-ESDHLNPRDSMKICKMFKFLRVLDLGSLFLD-----QYPAGIENLSRLRYLKLNIPSLKS-----LP 579 (843)
Q Consensus 511 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~~~~LrvL~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp 579 (843)
.+.|++|.+.++ ......-..+...+..-+.|+.|+|++|.++ .+-..+..-..|+.|+|++|.|.. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456777776553 3210000123344556667777777777765 333444455667777777777662 22
Q ss_pred hhHhhCCccCcEEeCCCC
Q 003154 580 SSLLSNLLNLYTLDMPSS 597 (843)
Q Consensus 580 ~~i~~~L~~L~~L~L~~~ 597 (843)
..+ ..-..|++|+|+++
T Consensus 120 ~aL-~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RST-LVTQSIVEFKADNQ 136 (197)
T ss_dssp HHT-TTTCCCSEEECCCC
T ss_pred HHH-hhCCceeEEECCCC
Confidence 222 34455777777654
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.34 E-value=0.035 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 303
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.34 E-value=0.064 Score=53.09 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 181 DDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 181 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 33345555555433 4789999999999999999998863
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.34 E-value=0.036 Score=53.92 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.047 Score=53.39 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.18 E-value=0.043 Score=53.28 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.18 E-value=0.042 Score=53.53 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|+|..|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 308
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.17 E-value=0.044 Score=52.51 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|+|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.15 E-value=0.081 Score=56.59 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555666654455688999999999999999988865
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.15 E-value=0.033 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.15 E-value=0.037 Score=53.90 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.15 E-value=0.047 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.14 E-value=0.044 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.14 E-value=0.047 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.13 E-value=0.046 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.04 E-value=0.035 Score=52.62 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.00 E-value=0.044 Score=52.87 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 318
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.99 E-value=0.064 Score=52.90 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 179 GLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+.++..+++...+... +..+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555665555433 4789999999999999999988763
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.98 E-value=0.046 Score=55.43 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999986
No 320
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.98 E-value=0.36 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998886
No 321
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.96 E-value=0.19 Score=54.78 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 322
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.96 E-value=0.082 Score=54.66 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 183 KMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 183 ~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++++..+..+ .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433 23467899999999999999999976
No 323
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.94 E-value=0.085 Score=55.20 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHHcC--CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 179 GLDDKMEELLDHLIEG--PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 179 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
|-...+..+...+... .....+|||.|..|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3334444444444333 34577999999999999999999876
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.93 E-value=0.054 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 325
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.93 E-value=0.051 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.92 E-value=0.054 Score=55.14 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 327
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.90 E-value=0.27 Score=53.13 Aligned_cols=58 Identities=9% Similarity=0.000 Sum_probs=38.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccc----ccCCeeEEEEeCCCCChHHHHHHHHHHhCC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVK----HYFDCKAWVPVSILYQPDSLLDNIIKFLMP 255 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 255 (843)
.-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ +.+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 45699999999999999999765211111 12345889887776665554 346666654
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.89 E-value=0.035 Score=53.10 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999977
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.87 E-value=0.048 Score=53.11 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.86 E-value=0.05 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..|++.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.86 E-value=0.073 Score=53.94 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 182 DKMEELLDHLIEG---PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 182 ~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344454444433 23467899999999999999999976
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.84 E-value=0.041 Score=53.74 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|+|+.|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.81 E-value=0.053 Score=54.68 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999984
No 334
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.79 E-value=0.055 Score=53.02 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.78 E-value=0.052 Score=53.81 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.76 E-value=0.057 Score=50.67 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 337
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.72 E-value=0.045 Score=52.54 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 338
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.68 E-value=0.44 Score=52.14 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=27.6
Q ss_pred HHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++.++|... ....++|.|+|.+|+||||++..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 13478999999999999999988875
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.66 E-value=0.043 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.63 E-value=0.056 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.59 E-value=0.049 Score=52.69 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.58 E-value=0.058 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-.+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.57 E-value=0.056 Score=50.70 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 344
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.55 E-value=0.064 Score=52.50 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+|+|+|..|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.54 E-value=0.042 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.45 E-value=0.057 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.45 E-value=0.058 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 348
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.42 E-value=0.098 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
....+++|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999887
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.41 E-value=0.057 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 350
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.37 E-value=0.24 Score=52.55 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-cCCe-eEEEEeCCC
Q 003154 185 EELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKH-YFDC-KAWVPVSIL 239 (843)
Q Consensus 185 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~-~~wv~~s~~ 239 (843)
-++++.|..-. +=+.++|+|.+|+|||+|++.+.+. +.. +=+. ++++-+.+.
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 35666665422 2357899999999999999999883 322 1132 245666654
No 351
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.35 E-value=0.051 Score=57.97 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=33.4
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|.+..++.+...+..+. ..-+-|+|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 358999887766555444322 223889999999999999999873
No 352
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.30 E-value=0.081 Score=57.82 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCceecchHHHHHHHHHHHcC------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG------------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+..++|.++.++.+...+... ....+-|.++|++|+||||+|+.++.
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999987776331 11245688999999999999999988
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.24 E-value=0.057 Score=52.44 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
++++|+|..|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.23 E-value=0.33 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|+|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998887
No 355
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.16 E-value=0.15 Score=49.13 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|+|.|..|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.09 E-value=0.082 Score=55.30 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999987
No 357
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.99 E-value=0.083 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+||.|.|.+|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999999987
No 358
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.99 E-value=0.15 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998887
No 359
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.97 E-value=0.087 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.96 E-value=0.076 Score=53.76 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.94 E-value=0.075 Score=51.92 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999976
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.89 E-value=0.083 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.83 E-value=0.077 Score=52.37 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.82 E-value=0.069 Score=53.04 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.81 E-value=0.075 Score=52.09 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.80 E-value=0.29 Score=52.48 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeE-EEEeCCCCChHHHHHHHHHHhCCCCC-Cccc-cccchHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKA-WVPVSILYQPDSLLDNIIKFLMPSSK-LSEV-MEDRDYEMRKII 274 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~~~ 274 (843)
-.+++|+|..|+||||+++.+.. .+.......+ ++.-.-.+. +..... .++. -..+...+. .
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~-----------~~~~~~~v~Q~~~g~~~~~~~--~ 200 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYV-----------FKHKKSIVNQREVGEDTKSFA--D 200 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSC-----------CCCSSSEEEEEEBTTTBSCSH--H
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhh-----------hccCceEEEeeecCCCHHHHH--H
Confidence 56899999999999999999987 2332223333 333211110 000000 0000 000122334 6
Q ss_pred HHHHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhh
Q 003154 275 HLHGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEI 323 (843)
Q Consensus 275 ~l~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 323 (843)
.+...|....=+|++|.+-+.+......... ..|-.|+.|+-..++
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 6777777666789999998766554433332 235667777766543
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.80 E-value=0.089 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.74 E-value=0.07 Score=52.21 Aligned_cols=23 Identities=4% Similarity=-0.176 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 369
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.73 E-value=0.2 Score=49.48 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccc---cc-cCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYV---KH-YFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.-.+++|+|..|+|||||++.+...... .. .-..++|+.-...+.... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 3579999999999999999999752111 11 124578887655444333 234444443
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.72 E-value=0.098 Score=52.66 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.60 E-value=0.081 Score=51.38 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.57 E-value=0.34 Score=50.98 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=58.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHLHG 278 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (843)
.+++|+|..|.|||||++.+..- +. .-...+.+.-........ ......-... ...... ..+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~----------~~~~i~~~~g-gg~~~r--~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKH----------HKNYTQLFFG-GNITSA--DCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSS----------CSSEEEEECB-TTBCHH--HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeecccccc----------chhEEEEEeC-CChhHH--HHHHH
Confidence 48999999999999999999872 22 224555554222211100 0000000000 112223 56667
Q ss_pred HhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchh
Q 003154 279 YLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIE 322 (843)
Q Consensus 279 ~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~ 322 (843)
.|..+.=+|++|.+-+.+.++.+... ..+ +.-+|+||-..+
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~~-~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNVL-CSG--HKGTLTTLHAGS 276 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHHH-HTT--CCCEEEEEECSS
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHHH-hcC--CCEEEEEEcccH
Confidence 77777778899999876666655443 221 223666665544
No 373
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.57 E-value=0.1 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 374
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.50 E-value=0.095 Score=50.57 Aligned_cols=23 Identities=4% Similarity=0.241 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-++|+|+|..|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 57899999999999999999986
No 375
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.50 E-value=0.1 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|..|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999875
No 376
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.47 E-value=0.076 Score=52.44 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.44 E-value=0.092 Score=51.45 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.40 E-value=0.087 Score=51.75 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.39 E-value=0.084 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998863
No 380
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.31 E-value=0.15 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999976
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.30 E-value=0.19 Score=52.42 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.29 E-value=0.048 Score=53.49 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999976
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.27 E-value=0.077 Score=52.47 Aligned_cols=23 Identities=9% Similarity=-0.129 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 384
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.26 E-value=0.07 Score=50.36 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.23 E-value=0.081 Score=53.32 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.19 E-value=0.094 Score=51.53 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.16 E-value=0.15 Score=50.81 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 388
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.16 E-value=1.5 Score=43.45 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC-ccccccCC-eeEEEEeCCCCChHHHHHHHHHHhCCCCC---
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS-NYVKHYFD-CKAWVPVSILYQPDSLLDNIIKFLMPSSK--- 258 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~-~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--- 258 (843)
.++++..+..+ +.+.|+|..|.||||+.....-+ ........ ..+.+..........+.+.+...++....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 34455555543 47899999999999866554332 11112222 23333333222233444444444432210
Q ss_pred -------------CccccccchHHHHHHHHHHHHhCCCeEEEEEcCCCCc
Q 003154 259 -------------LSEVMEDRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN 295 (843)
Q Consensus 259 -------------~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~ 295 (843)
...+-..+.+.+. +.+...+++-+ +||+|.+...
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~--~~l~~~l~~~~-~lVlDEah~~ 188 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLL--RKLEAGIRGIS-HVIVDEIHER 188 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHH--HHHHHCCTTCC-EEEECCTTSC
T ss_pred EEeechhhccCCCCCeEEEECHHHHH--HHHHhhhcCCc-EEEEECCccC
Confidence 0011223445566 55655454443 6889999763
No 389
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.11 E-value=0.17 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 390
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.08 E-value=0.081 Score=50.60 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 391
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.06 E-value=0.27 Score=54.49 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCC-hHHHHHHH
Q 003154 186 ELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQ-PDSLLDNI 249 (843)
Q Consensus 186 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 249 (843)
++++.|..-. +=+.++|.|..|+|||+|++++.+. .+-+.++++-+.+..+ +.++.+++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 3455554311 2357899999999999999998762 2336788888887655 44555543
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.03 E-value=0.18 Score=53.62 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999876
No 393
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.98 E-value=0.55 Score=49.37 Aligned_cols=54 Identities=15% Similarity=-0.010 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
.-.++.|.|.+|+||||||..++.+... .=..++|++. +-+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3468999999999999999998874222 1124666554 4566777777766543
No 394
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.96 E-value=0.11 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 395
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.96 E-value=0.16 Score=50.36 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 396
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.96 E-value=0.16 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999976
No 397
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.95 E-value=0.34 Score=50.67 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLM 254 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 254 (843)
..-.++.|.|.+|+||||||..++.+...++ ..++|++.. .+..++...+.....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 3456899999999999999998876422222 567777655 566777777766543
No 398
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.88 E-value=0.17 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 399
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.87 E-value=0.11 Score=51.13 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 400
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.82 E-value=0.11 Score=50.61 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.81 E-value=0.093 Score=51.70 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999987
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.81 E-value=0.13 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+++|+|..|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999999876
No 403
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.75 E-value=0.13 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999975
No 404
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.75 E-value=0.18 Score=55.42 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccccccCCe-eEEEEeCCCCC-hHHHHHHHHHHh--CC------CCC-Cccccc-
Q 003154 198 LSVVAVLDSVGLDKTAFA-AEAYNSNYVKHYFDC-KAWVPVSILYQ-PDSLLDNIIKFL--MP------SSK-LSEVME- 264 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l--~~------~~~-~~~~~~- 264 (843)
=+-++|+|..|+|||+|| ..+.|. . .-|. ++++-+.+..+ +.++.+++...= .. ..+ .+....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ--Q--GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC--C--TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356799999999999995 588873 2 2453 57777777543 444444443310 00 000 000000
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEEcCCCCc-hhhHHH
Q 003154 265 DRDYEMRKIIHLHGYLMSKRYLIVLDDVWTN-DVWEFI 301 (843)
Q Consensus 265 ~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~l 301 (843)
.....+..|+.++. +++.+||++||+-.. ..+.++
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsltr~A~A~REi 274 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDLSKQAQAYRQM 274 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecHHHHHHHHHHH
Confidence 00111222255555 599999999998432 344444
No 405
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.61 E-value=0.22 Score=54.90 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQ 241 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 241 (843)
.-.+++|+|..|+|||||++.+.. ..+ .-.+.+++.-...+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhh-hcCCeEEEecCcccc
Confidence 467999999999999999999987 232 223455554444444
No 406
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.59 E-value=0.2 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.59 E-value=0.18 Score=48.55 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+..+..++.. -+.-..+.|+|.+|.||||+|..+++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555566553 22344699999999999999988887
No 408
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.53 E-value=0.14 Score=48.48 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999987
No 409
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.48 E-value=0.19 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999999863
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.48 E-value=0.089 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHh-c
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAY-N 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~-~ 220 (843)
-.+++|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 411
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.48 E-value=0.22 Score=53.29 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+++-+.-+-..-.+++|+|..|.|||||++.+..
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444444443434467999999999999999999986
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.48 E-value=0.31 Score=50.49 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCC-eeEEEEeCCCCChHHHHHHHHHHh
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD-CKAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
-.+++|+|.+|+|||||++.+... ....-. .++|+... .+..++.+.++...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 468999999999999999998873 322222 46666543 24455555555544
No 413
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.44 E-value=0.2 Score=50.24 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.43 E-value=0.2 Score=50.23 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 415
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.43 E-value=0.17 Score=47.07 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 416
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.43 E-value=0.17 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999763
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.35 E-value=0.13 Score=51.01 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 418
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.34 E-value=0.29 Score=56.41 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=36.9
Q ss_pred CceecchHHHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 175 NDIVGLDDKMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 175 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999888888877765 37899999999999999999883
No 419
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.32 E-value=0.33 Score=46.92 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=24.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEE
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVP 235 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (843)
.|+|-|..|+||||.++.+++ ..+..-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEE
Confidence 477889999999999999988 4444333344433
No 420
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.31 E-value=0.2 Score=50.42 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 421
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.30 E-value=0.21 Score=50.56 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.19 E-value=0.14 Score=48.65 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 423
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.18 E-value=0.21 Score=50.61 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.17 E-value=0.12 Score=50.63 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.16 E-value=0.15 Score=53.56 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|+|.|..|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 426
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.14 E-value=0.22 Score=54.09 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=35.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCC----eeEEEEeCCCC-ChHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFD----CKAWVPVSILY-QPDSLLDNIIK 251 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~ 251 (843)
+-++|.|..|+|||||+.++.+.... +-| .++++-+.+.. .+.++.+++.+
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 34689999999999999999884332 223 56677777653 45566666544
No 427
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.10 E-value=0.21 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||++.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 428
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.08 E-value=0.16 Score=53.01 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=28.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI 238 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 238 (843)
...++|+|+|-||+||||+|..+..- ....=..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 35789999999999999999887762 222212455666554
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.04 E-value=0.15 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 430
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.02 E-value=0.21 Score=47.38 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999999875
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.98 E-value=0.16 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 432
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.92 E-value=0.24 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+|.|.|+.|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999883
No 433
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.90 E-value=1.1 Score=49.07 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHh
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
.-.++.|.|.+|+||||||..++.+...++ ..++|++.. -+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHHHH
Confidence 456899999999999999999887422221 246665443 44555666555543
No 434
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.89 E-value=0.22 Score=54.72 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=34.4
Q ss_pred eEEEEEcCCCChHHHHH-HHHhcCccccccCCe-eEEEEeCCCC-ChHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFA-AEAYNSNYVKHYFDC-KAWVPVSILY-QPDSLLDNIIK 251 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~ 251 (843)
+-++|+|..|+|||+|| ..+.+. . .-|. ++++-+.+.. .+.++.+++..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 46899999999999995 578773 2 3564 5777777764 35566655554
No 435
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.83 E-value=0.23 Score=50.57 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999763
No 436
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.70 E-value=0.18 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988877
No 437
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.70 E-value=0.51 Score=45.85 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=23.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCe
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDC 230 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~ 230 (843)
+.|+|-|..|+||||+++.+.+ .....++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE
Confidence 4688999999999999999988 44444443
No 438
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.66 E-value=0.16 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567999999999999999999874
No 439
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.65 E-value=0.19 Score=46.28 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 440
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.60 E-value=0.35 Score=53.11 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccccccCCe-eEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccch---HH--
Q 003154 198 LSVVAVLDSVGLDKTAFA-AEAYNSNYVKHYFDC-KAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDRD---YE-- 269 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~-- 269 (843)
=+-++|+|..|+|||+|| ..+.|. . +-|. ++++-+.+.. .+.++.+++.+.=......--....+. ..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 346799999999999995 577773 2 3564 4777777764 355566555542111100000001111 11
Q ss_pred -----HHHHHHHHHHhCCCeEEEEEcCCC
Q 003154 270 -----MRKIIHLHGYLMSKRYLIVLDDVW 293 (843)
Q Consensus 270 -----~~~~~~l~~~l~~kr~LlVlDdvw 293 (843)
+.-|+.++. +++.+||++||+-
T Consensus 238 a~~~a~tiAEyfrd--~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMY--KGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 111244444 5899999999984
No 441
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.48 E-value=0.17 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.46 E-value=0.17 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 443
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.44 E-value=0.32 Score=57.79 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCceecchHHHHHHHHHHHcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-------PPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 356899999999888877532 12345789999999999999999988
No 444
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.43 E-value=0.26 Score=50.51 Aligned_cols=23 Identities=13% Similarity=-0.065 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999987
No 445
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.39 E-value=0.4 Score=50.93 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccccC---C-eeEEEEeCCCCChHHHHHHHHHHh
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYF---D-CKAWVPVSILYQPDSLLDNIIKFL 253 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~-~~~wv~~s~~~~~~~~~~~i~~~l 253 (843)
..-.++.|+|..|+|||||+..+.......... . .++|++....+....+ ..+++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 346899999999999999999998732111111 2 3588887665543333 3345444
No 446
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.38 E-value=0.18 Score=52.75 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999883
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.35 E-value=0.18 Score=52.67 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 448
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.30 E-value=0.18 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 449
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.27 E-value=0.19 Score=54.56 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+.+.|........+++|+|..|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3344433333467999999999999999999987
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.24 E-value=0.18 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003154 200 VVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+|.|.|.+|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999987
No 451
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.21 E-value=0.2 Score=49.98 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 452
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.20 E-value=0.19 Score=51.83 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI 238 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 238 (843)
.++|+|.|-||+||||+|..+..- ....=..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 478899999999999999888763 222212355555543
No 453
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.20 E-value=0.18 Score=48.68 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 454
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.19 E-value=0.19 Score=50.54 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.18 E-value=0.18 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999763
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.11 E-value=0.2 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999873
No 457
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.09 E-value=0.22 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.08 E-value=0.16 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999987
No 459
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.05 E-value=0.19 Score=51.15 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=26.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI 238 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 238 (843)
++|+|.|-||+||||+|..+..- ....=..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCC
Confidence 67888999999999999888762 222212455566543
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.05 E-value=0.23 Score=47.19 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 461
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.04 E-value=0.26 Score=54.25 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=55.6
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHH-HHHhcCccc----cccCC-eeEEEEeCCCC-ChHHHHHHHHHHhCCCCCC
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFA-AEAYNSNYV----KHYFD-CKAWVPVSILY-QPDSLLDNIIKFLMPSSKL 259 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 259 (843)
.++.|..-. +=+-++|+|-.|+|||+|| ..+.|.... ..+-+ .++++-+.+.. .+.++.+++...=......
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 445444321 2346799999999999994 577773221 12345 36777788764 3555665555421000000
Q ss_pred ccccccch---H-------HHHHHHHHHHHhCCCeEEEEEcCCCC
Q 003154 260 SEVMEDRD---Y-------EMRKIIHLHGYLMSKRYLIVLDDVWT 294 (843)
Q Consensus 260 ~~~~~~~~---~-------~~~~~~~l~~~l~~kr~LlVlDdvw~ 294 (843)
--....+. . .+..|+.++. +++.+||++||+-.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCHHH
Confidence 00000110 0 1111244444 58999999999843
No 462
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.94 E-value=0.2 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.91 E-value=0.34 Score=51.23 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433334578999999999999999999974
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.91 E-value=1.2 Score=43.16 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998875
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.90 E-value=0.29 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999999764
No 466
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.90 E-value=0.31 Score=54.31 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...+|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999988885
No 467
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.81 E-value=0.37 Score=51.09 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=25.5
Q ss_pred HHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 003154 187 LLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 187 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+++-+.....+..+|+|+|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3433333334578999999999999999999864
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.79 E-value=0.12 Score=53.42 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 469
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.74 E-value=0.26 Score=49.19 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSI 238 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 238 (843)
-.++.|.|.+|+||||||.++... ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 468999999999999999887653 222223577776544
No 470
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.67 E-value=0.64 Score=59.87 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=54.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCCChHHHHHHHHHHhCCCCCCccc-cccchHHHHHHH
Q 003154 196 PQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILYQPDSLLDNIIKFLMPSSKLSEV-MEDRDYEMRKII 274 (843)
Q Consensus 196 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~ 274 (843)
..-+.|-|+|.+|+||||||.++... ....=..++|+++...++... ++.++..-+.-.+ .....++.. +
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l--~ 1495 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQAL--E 1495 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHH--H
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHH--H
Confidence 35679999999999999999999873 222223578888887776665 4444421110001 112223444 4
Q ss_pred HHHHHhC-CCeEEEEEcCCC
Q 003154 275 HLHGYLM-SKRYLIVLDDVW 293 (843)
Q Consensus 275 ~l~~~l~-~kr~LlVlDdvw 293 (843)
.+.+..+ .+--+||+|.+.
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCCCEEEEcChh
Confidence 5554543 456799999994
No 471
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.66 E-value=0.19 Score=54.86 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=35.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccC--CeeEEEEeCCCC-ChHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVKHYF--DCKAWVPVSILY-QPDSLLDNIIK 251 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~-~~~~~~~~i~~ 251 (843)
+-++|.|-.|+|||+|+.++.++....+.= +.++++-+.+.. .+.++.+++..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 456888999999999999998854432211 356677676654 45566666654
No 472
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.66 E-value=0.22 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999875
No 473
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.49 E-value=0.32 Score=54.08 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEeCCCC-ChHHHHHH
Q 003154 186 ELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPVSILY-QPDSLLDN 248 (843)
Q Consensus 186 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~ 248 (843)
++++.|..-. +=+.++|.|..|+|||+|+.++.+. .+-+.++++-+.+.. .+.++.++
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 3455554422 2457899999999999999999873 234678888887663 34444443
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.45 E-value=0.2 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999765
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.40 E-value=0.56 Score=45.84 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-..|.|.|..|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.39 E-value=0.22 Score=49.77 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
...|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 477
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.37 E-value=0.2 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.29 E-value=0.22 Score=47.51 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999765
No 479
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.29 E-value=0.16 Score=55.09 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=34.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccc--------ccCC-eeEEEEeCCCC-ChHHHHHHHHH
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNSNYVK--------HYFD-CKAWVPVSILY-QPDSLLDNIIK 251 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~ 251 (843)
+-++|.|..|+|||||+.++.+..... ++=+ .++++-+.+.. .+.++.+++.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 456889999999999999998854331 1112 56666677653 45555555443
No 480
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.22 E-value=0.48 Score=51.93 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHHHHH-HHHhcCccccccCCe-eEEEEeCCCC-ChHHHHHHHHHHhCCCCCCccccccc---h-----
Q 003154 199 SVVAVLDSVGLDKTAFA-AEAYNSNYVKHYFDC-KAWVPVSILY-QPDSLLDNIIKFLMPSSKLSEVMEDR---D----- 267 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~---~----- 267 (843)
+-++|.|-.|+|||+|| ..+.|. .+-+. ++++-+.+.. .+.++.+++.+.=......--....+ .
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 46799999999999996 577772 23443 5788888764 35566666544210110000000000 0
Q ss_pred --HHHHHHHHHHHHhCCCeEEEEEcCCC
Q 003154 268 --YEMRKIIHLHGYLMSKRYLIVLDDVW 293 (843)
Q Consensus 268 --~~~~~~~~l~~~l~~kr~LlVlDdvw 293 (843)
..+.-|+.++. +++.+||++||+-
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 11111255554 5899999999984
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.11 E-value=0.24 Score=51.14 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.++|.|+|..|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.11 E-value=0.27 Score=45.61 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998865
No 483
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.10 E-value=0.48 Score=48.00 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 184 MEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 184 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
+.++.+.+.........|+|+|.+|+|||||...+...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44445555554445677999999999999999999875
No 484
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.06 E-value=0.26 Score=49.97 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=58.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccCCeeEEEEe-CCCCChHHHHHHHHHHhCCCCCCccccccchHHHHHHHHH
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNSNYVKHYFDCKAWVPV-SILYQPDSLLDNIIKFLMPSSKLSEVMEDRDYEMRKIIHL 276 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 276 (843)
-.+++|+|..|+|||||++.+.. .....+...+++.- .-.+-... .+ .+..+.. +. .+...+. ..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~---~~--~~v~q~~---~g-l~~~~l~--~~l 91 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKH---KK--SIVNQRE---VG-EDTKSFA--DAL 91 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCC---SS--SEEEEEE---BT-TTBSCHH--HHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCC---cc--eeeeHHH---hC-CCHHHHH--HHH
Confidence 56999999999999999999887 33322244443321 11100000 00 0000000 00 0112334 556
Q ss_pred HHHhCCCeEEEEEcCCCCchhhHHHHHhcCCCCCCcEEEEEecchhhh
Q 003154 277 HGYLMSKRYLIVLDDVWTNDVWEFIQEILPDNLNGSRVLTTVSNIEIL 324 (843)
Q Consensus 277 ~~~l~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 324 (843)
...|..+.=+|++|..-+.+....+.... ..|.-|++||-+.++.
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 66665566678889997665444433322 2366788888776543
No 485
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.04 E-value=0.41 Score=56.38 Aligned_cols=48 Identities=27% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCceecchHHHHHHHHHHHcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 174 DNDIVGLDDKMEELLDHLIEG-----------PPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 174 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-.++.|.++.+++|.+.+.-. -...+=|-++|.+|.|||.||+++++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 346788999988887765432 122445779999999999999999994
No 486
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.04 E-value=0.29 Score=45.88 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..--|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.02 E-value=0.28 Score=45.41 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 488
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.00 E-value=0.23 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 489
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.99 E-value=0.23 Score=46.59 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 490
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.98 E-value=0.26 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999874
No 491
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.90 E-value=0.25 Score=51.13 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999986
No 492
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.88 E-value=0.24 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999765
No 493
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.84 E-value=0.28 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 003154 200 VVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 200 vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
-|.|+|-+|||||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999988754
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.64 E-value=0.23 Score=51.54 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003154 198 LSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 198 ~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 495
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.63 E-value=0.24 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 496
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.60 E-value=0.21 Score=50.77 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
+...|+|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999887
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.57 E-value=0.53 Score=47.93 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 003154 183 KMEELLDHLIEGPPQLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+.++.+.+...+.....|+++|.+|+|||||...+...
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 334444444444445678899999999999999999875
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.54 E-value=0.24 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
.+++++|+|+-|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999853
No 499
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.47 E-value=0.31 Score=46.48 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 003154 197 QLSVVAVLDSVGLDKTAFAAEAYNS 221 (843)
Q Consensus 197 ~~~vi~I~G~gGvGKTtLa~~v~~~ 221 (843)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998874
No 500
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.46 E-value=0.34 Score=44.91 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003154 199 SVVAVLDSVGLDKTAFAAEAYN 220 (843)
Q Consensus 199 ~vi~I~G~gGvGKTtLa~~v~~ 220 (843)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999864
Done!