BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003155
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 127/637 (19%), Positives = 251/637 (39%), Gaps = 76/637 (11%)
Query: 184 IVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQ 238
IV +L P E ++M FW+ LQ D + N+ ++ + +
Sbjct: 349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQ------DEVFAMSNDE----QKHKCWE 398
Query: 239 VFRSAYESLVSLVSFRVQYPQDYQ--DLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAV 296
+ Y L ++ + + P + S +DL+ F+ R D +
Sbjct: 399 YIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD-----------------I 441
Query: 297 ADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA 356
+D + VL D L+IL E +A W EA ++ ++++ + E
Sbjct: 442 SDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK 500
Query: 357 EVMPQVM---AXXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 413
+P++M A T T+G+Y W +P+ + +++L G+++
Sbjct: 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL---MENPAYIPPAINLLVRGLNS 557
Query: 414 SEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 473
S + +C DC+ +L Y D L N ++N G +K S DS+ L+ ++
Sbjct: 558 S--MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT-GRMKNS--DSVRLMFSIGK 612
Query: 474 VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP--RDLTV-HIDRFAYIFRY 530
+++ L + K L+++ P LQ I K P R T+ ++ + +F
Sbjct: 613 LMSLLRPEEIPKYLDIIVSPCFEELQAICQAD-----SKTPAARIRTIFRLNMISTLFSS 667
Query: 531 VN---------HP--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579
+N P + V +QR PIFK I ++ ++ +E+ C A K+A+ +
Sbjct: 668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS 727
Query: 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639
+ + I +Q L +S I +F D C + L+ + + L
Sbjct: 728 FQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLF 787
Query: 640 TSIEE--FTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREASN 696
S E F++ D + F ++ I+ PQ+ ++ + LV + G+T+ A
Sbjct: 788 ESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIR 847
Query: 697 SILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYAL 756
+ + FL+ +++ + V++ G + + P S+++ L
Sbjct: 848 NSIQFLTHFVMQSRN------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADIL 901
Query: 757 LALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRF 791
LA+ R Y W K +S P + + +++R+
Sbjct: 902 LAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRY 938
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 138/649 (21%), Positives = 274/649 (42%), Gaps = 95/649 (14%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAI------ 267
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMAXX-XXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ TV TIGA S+W + P ++ SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLV 534
Query: 408 TSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS--L 465
+ E + IC +C+ L Y + AV+ + +K + S +
Sbjct: 535 LHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANI-----VAVSQDVLMKQIHKTSQCM 588
Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRF 524
L++AL +++ L + K L L P + L+++ + P K VHI
Sbjct: 589 WLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLA----IVHILGLL 644
Query: 525 AYIFRY--VNHPEAVADAIQ-RLWPI-----------------FKAIFDIRAWDMRTMES 564
+ +F ++H E + + R P+ + + D + +E+
Sbjct: 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEA 704
Query: 565 LCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYL 624
+C + +V+T + + E + +Y Q L L+ +++ IF +P+
Sbjct: 705 VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP- 763
Query: 625 HNLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 671
IEALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 764 ---IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 136/647 (21%), Positives = 264/647 (40%), Gaps = 91/647 (14%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAI------ 267
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDXETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ + P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNXIXFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLXYVYEXLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMAXX-XXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ TV TIGA S+W + P + SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVXFTIGALSEWL---ADHPVXINSVLPLV 534
Query: 408 TSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 467
+ E + IC +C+ L Y + V + + + L
Sbjct: 535 LHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLXKQIH---KTSQCXWL 590
Query: 468 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRFAY 526
+AL +++ L + K L L P + L+++ + P K VHI +
Sbjct: 591 XQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKL----AIVHILGLLSN 646
Query: 527 IFRY--VNHPEAVADAIQ-RLWPIFKAIFD---------------IRAW--DMRTMESLC 566
+F ++H E + + R P+ + + W D + +E++C
Sbjct: 647 LFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVC 706
Query: 567 RACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHN 626
+ +V+T + + E + Y Q L L+ +++ IF +P+
Sbjct: 707 AIFEKSVKTLLDDFAPXVPQLCEXLGRXYSTIPQASALDLTRQLVHIFAHEPAHFPP--- 763
Query: 627 LIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 671
IEALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 764 -IEALFLLVTSVTLTLFQQGPRDHPDIVDSFXQLLAQALKRKPDLFL 809
>pdb|3TYX|A Chain A, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3TYX|B Chain B, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 522 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 581
D + Y + H +A+ I++ P+F + I W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSDESIN-WEEKTKEKELRPNNWISVTNGQATG 207
Query: 582 ITIGAILEEIQGLYQQHQQPC 602
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3GJZ|A Chain A, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
pdb|3GJZ|B Chain B, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
Length = 336
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 522 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 581
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 582 ITIGAILEEIQGLYQQHQQPC 602
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYXPC 228
>pdb|3T5M|A Chain A, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3T5M|B Chain B, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 522 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 581
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 582 ITIGAILEEIQGLYQQHQQPC 602
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3U1B|A Chain A, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3U1B|B Chain B, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 522 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 581
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 582 ITIGAILEEIQGLYQQHQQPC 602
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 233 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVM 292
R+R+ V R AYE L V+FR+QYP+ + LS E ++ Y S VM
Sbjct: 100 RARKFNVGR-AYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVM 158
Query: 293 LIAVAD 298
L + +
Sbjct: 159 LFNIEN 164
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 233 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLK 270
R+R+ V R AYE L V+FR+QYP+ + LS E ++
Sbjct: 100 RARKFNVGR-AYELLRGYVNFRLQYPELFDSLSPEAVR 136
>pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIE|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIG|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
pdb|2BIG|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
Length = 361
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 221 ISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 280
++F + + E S R Q + +E +L+ +Q P DYQ L L+ + T +
Sbjct: 28 LNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN 87
Query: 281 CCSSSTLTESVMLIAVADVLIDAASVLG 308
+ T+ V+ + ++ + A +LG
Sbjct: 88 LLTKGTIGNYVLTGSWSEKALKEAKLLG 115
>pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|1W23|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|2BHX|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BHX|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BI1|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI1|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI2|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI2|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI3|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI3|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI5|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI5|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI9|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BI9|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BIA|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
pdb|2BIA|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
Length = 360
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 221 ISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 280
++F + + E S R Q + +E +L+ +Q P DYQ L L+ + T +
Sbjct: 27 LNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN 86
Query: 281 CCSSSTLTESVMLIAVADVLIDAASVLG 308
+ T+ V+ + ++ + A +LG
Sbjct: 87 LLTKGTIGNYVLTGSWSEKALKEAKLLG 114
>pdb|3HUT|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Rhodospirillum Rubrum
Length = 358
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)
Query: 82 SVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS 141
++L + L LT ++ + + EA+ +L ++AAG GG V++
Sbjct: 4 ALLLGYELPLTGANAAYGRVFQEAAR---LQLDRFNAAGGVGGRPVDI------------ 48
Query: 142 LKAHLTDSSKDEEDVKAIARLFAD-------MGD-SYVELIATGSDESMLIVHALLEVAS 193
DS D + + IAR F D +GD S A GS L A+
Sbjct: 49 ---LYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSXAAGSIYGKEGXPQLSPTAA 105
Query: 194 HPEY 197
HP+Y
Sbjct: 106 HPDY 109
>pdb|3HAG|A Chain A, Crystal Structure Of The Hepatitis E Virus-Like Particle
Length = 504
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 750 ETVTYALLALTRAYGV-RSLEWAKESVSLIPLTALAEVERSRFLQAL 795
+TVT+ +A T A GV RSL+W+K ++ PLT + + ++ F+ L
Sbjct: 386 DTVTFVNVA-TGAQGVSRSLDWSKVTLDGRPLTTIQQYSKTFFVLPL 431
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl-
Trna Synthetase
Length = 88
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 268 DLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKIL 316
D + +K T Y +AC S L ++ ++ V +V+ D L D TL++L
Sbjct: 23 DAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,342,233
Number of Sequences: 62578
Number of extensions: 776722
Number of successful extensions: 2115
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2095
Number of HSP's gapped (non-prelim): 18
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)