BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003155
(843 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3
Length = 923
Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 195/804 (24%), Positives = 346/804 (43%), Gaps = 95/804 (11%)
Query: 8 VPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVL- 66
+P LE+LTVLPEEV + + RR + ++L +S L C+ E++L
Sbjct: 140 LPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLM 199
Query: 67 ---EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSG 123
SW L VL S+ + L +L E+L + + S +H +A+
Sbjct: 200 KVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DKTSSNLHEAASDCVC 250
Query: 124 GA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIARLFADMGDSYVELI 174
A N+PL + +++L+ H+ + +D + V R+F ++ ++++E I
Sbjct: 251 SALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKI 310
Query: 175 ATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEA 231
+ + + LL A HP+Y++ ++FNFW+ L L K + + G
Sbjct: 311 VCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHG------- 363
Query: 232 ERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHTRYDLACCSSSTLTE 289
+F++ + L+ ++ Q D++ + E D EF+
Sbjct: 364 -------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR---------------- 400
Query: 290 SVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 349
+ V+D++ D ++G LY EG + W EA LF + AI+
Sbjct: 401 ----MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWEVTEAVLFIMAAIA- 448
Query: 350 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAASSDPSILASVLSIL 407
V+ E P ++ +L + + P+ + T +I + + +P L VL L
Sbjct: 449 --KSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 467
G+ + A+AAA A +IC CR + + +GL + R+ S +S E ++ L
Sbjct: 507 MKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL----DSFLLSPEAAVGL 561
Query: 468 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 527
++ ++V+ LP + L LC V L+++++Q P D TV +DR A I
Sbjct: 562 LKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGISSDPTVFLDRLAVI 618
Query: 528 FRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579
FR+ N HP IQ +WP+ + D R +E CR ++AVR +
Sbjct: 619 FRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKG 676
Query: 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639
+ ++ ++ +Y HQ CFLYL S ++ +G + C L ++++AL T LL
Sbjct: 677 SAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLL 736
Query: 640 TSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSIL 699
+ PD DD F LA+R I+ P + S V ++ ++ T+ HR+A+ S++
Sbjct: 737 EQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVM 796
Query: 700 TFLSDIFDLAKSCKGEEFLSVRD----SVIIPRGASITRILIASLTGALPSSRLETVTYA 755
FL D+ + EE +R V+ G + L+ + LP L V
Sbjct: 797 RFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEV 856
Query: 756 LLALTRAYGVRSLEWAKESVSLIP 779
L + + W + S+ +P
Sbjct: 857 LWEIMQVDRPTFCRWLENSLKGLP 880
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1
Length = 923
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 193/804 (24%), Positives = 346/804 (43%), Gaps = 95/804 (11%)
Query: 8 VPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVL- 66
+P LE+LTVLPEEV + + RR + ++L +S L C+ E++L
Sbjct: 140 LPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLM 199
Query: 67 ---EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSG 123
SW L VL S+ + L +L E+L + + S +H +A+
Sbjct: 200 KVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DKTSSNLHEAASDCVC 250
Query: 124 GA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIARLFADMGDSYVELI 174
A N+PL + +++L+ H+ + +D + V R+F ++ ++++E I
Sbjct: 251 SALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKI 310
Query: 175 ATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEA 231
+ + + LL A HP+Y++ ++FNFW+ L L K + +
Sbjct: 311 VCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHS------- 363
Query: 232 ERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHTRYDLACCSSSTLTE 289
+F++ + L+ ++ Q D++ + E D EF+
Sbjct: 364 -------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR---------------- 400
Query: 290 SVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 349
+ V+D++ D ++G LY EG + W EA LF + AI+
Sbjct: 401 ----MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWEVTEAVLFIMAAIA- 448
Query: 350 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAASSDPSILASVLSIL 407
V+ E P ++ +L + P+ + T +I + + +P L VL L
Sbjct: 449 --KSVDPENNPTLVEVLEGVVHLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 467
G+ + A+AAA A +IC CR + + +GL + + S +S E ++ L
Sbjct: 507 MKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIAHSL----DSFMLSPEAAVGL 561
Query: 468 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 527
++ ++V+ LP + L LC V L+++++Q P D TV +DR A I
Sbjct: 562 LKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGISSDPTVFLDRLAVI 618
Query: 528 FRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579
FR+ N HP IQ +WP+ + D R +E CR ++AVR +
Sbjct: 619 FRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKG 676
Query: 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639
+ ++ ++ +Y HQ CFLYL S ++ +G + C L ++++AL T LL
Sbjct: 677 SAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLL 736
Query: 640 TSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSIL 699
+ PD DD F LA+R I+ P + S V ++ ++ T+ HR+A++S++
Sbjct: 737 EQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANSSVM 796
Query: 700 TFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGA----LPSSRLETVTYA 755
FL D+ + EE +R +I + + + L++ L LP L V
Sbjct: 797 RFLRDLIHTGVANDHEEDFELRKELIGQVMSQLGQQLVSQLLHTCCFCLPPYTLPDVAEV 856
Query: 756 LLALTRAYGVRSLEWAKESVSLIP 779
L + + W + S+ +P
Sbjct: 857 LWEIMQVDRPTFCRWLENSLKGLP 880
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2
Length = 955
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 177/795 (22%), Positives = 343/795 (43%), Gaps = 92/795 (11%)
Query: 65 VLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGG 124
VL + SWLR IP + + PL+ A SL ++L E +V + L + +
Sbjct: 201 VLTSLISWLR---EIPLDKVMASPLIELAFRSLDDDLLLEDAVEFLCALFNETKDVDETT 257
Query: 125 ATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLI 184
+ M + P+++ L+ L + D E +A+ RLFA+ G+++V LIA ++ + +
Sbjct: 258 DAILM-----LYPRLLELQPKLIAACDDPETFRALGRLFAEAGEAWVVLIARMPNDFLPL 312
Query: 185 VHALLEVASH-PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 243
V+ + +VA++ E + TF FW L+ + + D Y AEA Q+F
Sbjct: 313 VNCIAQVAANDTELEAIKFTFAFWWDLKQ-MVELDVY--------AEAR-----QLFAPI 358
Query: 244 YESLVSLVSFRVQYPQD---------------YQDLSLED-LKEFKHTRYDLACCSSSTL 287
Y LV ++ + YP+ ++D ED + F+H D+ L
Sbjct: 359 YLELVRIIVRHLHYPRTEDLAINEQMASNEVLFEDRDAEDRFRSFRHEMGDV-------L 411
Query: 288 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAI 347
+ ++ V+ L+ +S L +K+L IK G+ W+ EA LF +RAI
Sbjct: 412 KDCCVVAGVSSCLVQISSQL-----IKVLKIK-ESGLPYY------WQDVEAPLFALRAI 459
Query: 348 STYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
V E +V+ + +LP+LP+ ++ L +G Y++W + L L+ +
Sbjct: 460 GRMVPANEDQVIGSLFQILPQLPENNKVRYAATLFLGRYTEW---TAQHSEFLELQLNYI 516
Query: 408 TSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 466
++G +++ +AAA A +H C DCR++L G+L L+ Y A ++ + +
Sbjct: 517 SAGFEVANKEVQSAAAQALKHFCYDCREQLVGHLSQLHMFYLNA-----KTYLAPDPLME 571
Query: 467 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 526
+ + L+ ++ P + +++ P + + ++ Q + L +ID
Sbjct: 572 VAQGLAHIVDIQPVANVYQSVHSFLAPSLQSI--LLAQVKLNPTQAELEALADNID-IVT 628
Query: 527 IFRYVNHPEAVADAI-------QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579
IF + HP + A + Q +WPI D + D+ E + + K + T K
Sbjct: 629 IFLSLVHPPSPAGELHPIVRLFQDIWPILSRTLDTFS-DVLICERISKLLKNFIYTFKEK 687
Query: 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639
+T+ I E + +++ Q CFL++S ++ FG L + + K+ T +
Sbjct: 688 AIVTLPVITEALIKGFEKTQYGCFLWVSGACVRQFGVPEMDEQTLSAVWSFVGKQCTNMF 747
Query: 640 TSIEEFTSR--PDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNS 697
+ + PDV DD F L + PQ+ + S + SL+ +M+ + ++ +E +
Sbjct: 748 YYMSNKNPKEIPDVIDDFFRLMMDALLANPQMVLESQMLESLIQAAMMSLQLEQQEPLQT 807
Query: 698 ILTFLSDIFDLAKSCKGEEFLS--------VRDSVIIPRGASITRILIASLTGALPSSRL 749
+L FL D+ A + +++ + IL + P +
Sbjct: 808 VLNFLQDLLAFALHTPPYSLIEPLPDSLLKSLADLLLKNSQELYIILFNGMVFTFPRDNI 867
Query: 750 ETVTYALLALTR----AYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVN 805
+ L+ L R A +++ + +P + + ER +FL S+ + ++
Sbjct: 868 SDASAVLIPLIRLVFAADPSLCIKYMSNVLDQLPAMTIGQEEREKFLANFSKHCTSSEMP 927
Query: 806 AAMAPVEELSDVCRR 820
A +++ + + RR
Sbjct: 928 RLRAHLQDWTAMYRR 942
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1
Length = 972
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 151/668 (22%), Positives = 271/668 (40%), Gaps = 111/668 (16%)
Query: 1 MNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQM----EVALSTLTACL 56
+NS P + FL +LPEE + IA+ +F + + E L L +C+
Sbjct: 132 LNSSPSILLNFLR---ILPEETLD--IASTSLTEVEFNSRIHELIDPIAEDVLKFLVSCI 186
Query: 57 HINELK----------EQVLEAFASWLRLKHRIP-GSVLASHPLVLTALSSLHSEILSEA 105
+ + EQ+L SW + P +L PL+ ++ + +E+
Sbjct: 187 DLLQNTDGNSSSSISLEQILRCLNSW---SYEFPVEQLLTVQPLINLVFETISNG--NES 241
Query: 106 SVNVISELIH-YSAAGSSGGATVNMPLIQVIVPQIMSLKA---------HLTDSSKDEED 155
+ I T N LI + Q+M L+ H + D++
Sbjct: 242 DMEAFDSAIDCLCVILRESRDTTNEQLISALFHQLMLLQEKLLPTLFTDHPLNDEYDDDL 301
Query: 156 VKAIARLFADMGDSYVELIATGSD--ESMLIVHALLEVASHPEYDIASMTFNFWHSL-QV 212
++ + RLF + G+++ +I+ D + M++V +L + + D+ S TF FW + Q
Sbjct: 302 LEGMTRLFVEAGEAWSVVISKNPDFFKPMVLVLLML-TCKNEDLDVVSYTFPFWFNFKQS 360
Query: 213 ILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEF 272
++ R + SR+ + + L++ + +QYP Q S E+ +F
Sbjct: 361 LVLPR-------------YQESRK--AYSDIFVKLINGIITHLQYPSG-QFSSKEEEDKF 404
Query: 273 KHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHN 332
K RY + DVL D +V+G L I+ + +N
Sbjct: 405 KDFRYHMG-----------------DVLKDCTAVVGTSEALSQPLIRIKSAIE----NNN 443
Query: 333 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA 392
W+ EA LF +R ++ +S+ E ++P+++ ++ LP+Q ++ L +G Y++W
Sbjct: 444 SWQIMEAPLFSLRTMAKEISLTENTILPEIIKIICNLPEQAKIRYASTLVLGRYTEW--- 500
Query: 393 ASSDPSILASVLSILTSGMSTSED--------TAAAAALAFRHICDDCRKKLCGYLDGLY 444
+ P +L L + +G E TA++ AL F C DC K L GY+D L
Sbjct: 501 TAKHPELLEVQLQYIFNGFQLHEGSSDMQSIITASSHALMF--FCSDCSKLLVGYIDQLI 558
Query: 445 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQ 504
N + +N + S+ + E L + LS VI P+ + L + ++ +I Q
Sbjct: 559 NFF---LNVQSSIDI--ESQFELCQGLSAVINNQPEAKVSVIFQKLVDDNLRQIEALIPQ 613
Query: 505 ---GPEILQKKHPRDLTVHIDRFAYIFRYVNHP----EAVADAIQRLWPIFKAIFDIRAW 557
P +L + + + F + N+P E + I+ +W + + + A
Sbjct: 614 WKANPTLLAPQIADKIDLLYALFEELKPRYNYPQQGSEPLLPRIEFIWKALRTLL-VDAG 672
Query: 558 DMRTMESLCRACKYAVRTSKRFMGI------TIGAILEEIQGLYQQHQQPCFLYLSSEVI 611
M + R K R +RF ++ L IQG Y +L+ S +I
Sbjct: 673 AMTDSIIVERVAKLLRRIFERFHVFCEPILPSVAEFL--IQG-YLTTGFGSYLWCSGSLI 729
Query: 612 KIFGSDPS 619
IFG D S
Sbjct: 730 VIFGDDES 737
>sp|Q5ZIC8|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1
Length = 958
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 159/751 (21%), Positives = 327/751 (43%), Gaps = 96/751 (12%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
+K++VL+ F+SW++L+ IP ++ L+ A +SL L + +V + I
Sbjct: 213 IKQKVLKCFSSWVQLE--IP--LMDCENLIQAAFTSLQDPELFDTAVEAVVNAI------ 262
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + S D E I R+ +G+++ +
Sbjct: 263 SQPDAQRYVNTLLKLIPPVLGLQEQLRQAVQSGDMETSHGICRIAVALGENHSRALLDQV 322
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF + A
Sbjct: 323 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEPDKQAV 376
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 377 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 421
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + + + W+ EA L+ ++I+
Sbjct: 422 -------ISDTLMYVYEMLGAE-LLSSLYDKLGR-LLTNTEQPSTWQHTEALLYGFQSIA 472
Query: 349 TYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ L+P++ QL TV TIGA S+W + P ++ +VL ++
Sbjct: 473 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINNVLPLV 529
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS--L 465
+ E + ++ + + IC +C+ L Y + AV+ E +K + S +
Sbjct: 530 LQALGNPELSISSVS-TLKKICRECKYDLPPYAANI-----VAVSQEVLMKQIHKTSQCM 583
Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK------------- 512
L++AL +++ L + K L L P + L+++ ++ P K
Sbjct: 584 WLMQALGFLLSALQVEEILKNLHSLITPYIQQLEKLADETPNPSNKLAIIHILGLLSNLF 643
Query: 513 HPRDLTVHIDRFAYI----FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 568
D++ H D P V +Q+++ + + + D + +ES+C
Sbjct: 644 TTLDISHHDDDHESTEVKKLPVQQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVESVCAI 703
Query: 569 CKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLI 628
+ +V+T + + E + +Y Q + L+ +++ IF +P+ I
Sbjct: 704 FEKSVKTLLDDFAPMVPQLCEMLGQMYSTIPQASAIDLTRQLVHIFAHEPAHFPP----I 759
Query: 629 EALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMI 685
+ALF T + ++ + R PD+ D L ++ ++ P LF+ S++ +L C ++
Sbjct: 760 KALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCSNLDVKALFHCGVL 819
Query: 686 GITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALP 745
+ + F + +L C GE ++ V+ G + + ++ + G
Sbjct: 820 SLKFPEAPTVKASCGFFT---ELLPRC-GE--IAPVGQVVHENGKVLLQAVLEGVGGQAS 873
Query: 746 SSRLETVTYALLALTR-AYGVRSLEWAKESV 775
S ++ L AL + + S+ W KE++
Sbjct: 874 RSLMDHFAEILFALNKHCFSYLSI-WIKEAM 903
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1
Length = 963
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 144/649 (22%), Positives = 285/649 (43%), Gaps = 95/649 (14%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAI------ 267
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ L+P++ QL TV TIGA S+W + P ++ SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLV 534
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS--L 465
+ E + ++ + + IC +C+ L Y + AV+ + +K + S +
Sbjct: 535 LHALGNPELSVSSVS-TLKKICRECKYDLPPYAANI-----VAVSQDVLMKQIHKTSQCM 588
Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRF 524
L++AL +++ L + K L L P + L+++ + P K VHI
Sbjct: 589 WLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLA----IVHILGLL 644
Query: 525 AYIFRY--VNHPEAVADAIQ-RLWPI-----------------FKAIFDIRAWDMRTMES 564
+ +F V+H E + + R P+ + + D + +E+
Sbjct: 645 SNLFTTLDVSHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEA 704
Query: 565 LCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYL 624
+C + +V+T + + E + +Y Q L L+ +++ IF +P+
Sbjct: 705 VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTVPQASALDLTRQLVHIFAHEPAHFPP- 763
Query: 625 HNLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 671
IEALF T + S+ + R PD+ D L ++ ++ P LF+
Sbjct: 764 ---IEALFLLVTSVTLSLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1
Length = 963
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 138/647 (21%), Positives = 279/647 (43%), Gaps = 91/647 (14%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I A
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQ 273
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
+ + +P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 274 RCVNTLLKL------IPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ L+P++ QL TV TIGA S+W + P ++ SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLV 534
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 467
+ E + ++ + + IC +C+ L Y + V + + + + L
Sbjct: 535 LHALGNPEPSVSSVS-TLKKICRECKYDLPPYAANIVAVSQDVLMKQIH---KTSQCMWL 590
Query: 468 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRFAY 526
++AL +++ L + K L L P + L+++ + P K VHI +
Sbjct: 591 MQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLA----IVHILGLLSN 646
Query: 527 IFRY--VNHPEAVADAIQ-RLWPI-----------------FKAIFDIRAWDMRTMESLC 566
+F ++H E + + R P+ + + D + +E++C
Sbjct: 647 LFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVC 706
Query: 567 RACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHN 626
+ +V+T + + E + +Y Q L L+ +++ IF +P+
Sbjct: 707 AIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP--- 763
Query: 627 LIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 671
IEALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 764 -IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1
Length = 963
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 137/645 (21%), Positives = 279/645 (43%), Gaps = 87/645 (13%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAI------ 267
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 268 SQPDAQRYVNTLLKLIPLVLGLQDQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNMIMFCTGIPGHFPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ L+P++ QL TV TIGA S+W + P ++ SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLV 534
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS--L 465
+ E + ++ + + IC +C+ L Y + AV+ + +K + S +
Sbjct: 535 LHALGNPELSISSVS-TLKKICRECKYDLPPYAANI-----VAVSQDVLMKQIHKTSQCM 588
Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFA 525
L++AL +++ L + K L L P + L+++ + P K + +
Sbjct: 589 WLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLF 648
Query: 526 YIFRYVNHPEAVADAIQRLWPI-----------------FKAIFDIRAWDMRTMESLCRA 568
+H + + R P+ + + D + +E++C
Sbjct: 649 TTLDVSHHEDDHEGSELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAI 708
Query: 569 CKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLI 628
+ +V+T + + E + +Y Q L L+ +++ IF +P+ I
Sbjct: 709 FEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP----I 764
Query: 629 EALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 671
EALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 765 EALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3
Length = 963
Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 142/649 (21%), Positives = 285/649 (43%), Gaps = 95/649 (14%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAI------ 267
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ L+P++ QL TV TIGA S+W + P ++ SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLV 534
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS--L 465
+ E + ++ + + IC +C+ L Y + AV+ + +K + S +
Sbjct: 535 LHALGNPELSVSSVS-TLKKICRECKYDLPPYAANI-----VAVSQDVLMKQIHKTSQCM 588
Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRF 524
L++AL +++ L + K L L P + L+++ + P K VHI
Sbjct: 589 WLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLA----IVHILGLL 644
Query: 525 AYIFRY--VNHPEAVADAIQ-RLWPI-----------------FKAIFDIRAWDMRTMES 564
+ +F ++H E + + R P+ + + D + +E+
Sbjct: 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEA 704
Query: 565 LCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYL 624
+C + +V+T + + E + +Y Q L L+ +++ IF +P+
Sbjct: 705 VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP- 763
Query: 625 HNLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 671
IEALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 764 ---IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1
Length = 963
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 143/648 (22%), Positives = 285/648 (43%), Gaps = 95/648 (14%)
Query: 61 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAG 120
++++VL+ F+SW++L+ +P + L+ A ++L L ++SV I I
Sbjct: 218 VRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSELFDSSVEAIVNAI------ 267
Query: 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLFADMGDSYVELIATGS 178
S A + + ++P ++ L+ L + + D E I R+ +G+++ +
Sbjct: 268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327
Query: 179 D--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230
+ +S L +V+ ++ P + +S+T FW++LQ D +SF E A
Sbjct: 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQ------DDILSFEAEKQAV 381
Query: 231 AERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLT 288
+ QV+R Y LV ++ + Q+P D Y S ++ ++F+ R D
Sbjct: 382 YQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------- 426
Query: 289 ESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348
++D L+ +LG + L LY K + ++ W+ EA L+ ++I+
Sbjct: 427 -------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQSIA 477
Query: 349 TYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407
+ V ++V+P ++ L+P++ QL TV TIGA S+W + P ++ SVL ++
Sbjct: 478 ETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLV 534
Query: 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS--L 465
+ E + ++ + + IC +C+ +L Y + AV+ + +K + S +
Sbjct: 535 LHALGNPELSVSSVS-TLKKICRECKYELPPYAANI-----VAVSQDVLMKQIHKTSQCM 588
Query: 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRF 524
L++AL +++ L + K L L + L+++ + P K + VHI
Sbjct: 589 WLMQALGFLLSALQVEENLKNLHSLISTYIQQLEKLAEEIP----KPSNKLAIVHILGLL 644
Query: 525 AYIFRY--VNHPEAVADAIQ-RLWPI-----------------FKAIFDIRAWDMRTMES 564
+ +F V+H E + + R P+ + + D + +E+
Sbjct: 645 SNLFTTLDVSHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLSDAQVVEA 704
Query: 565 LCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYL 624
+C + +V+T + + E + +Y Q L L+ +++ IF +P+
Sbjct: 705 VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTVPQASALDLTRQLVHIFAHEPAHFPP- 763
Query: 625 HNLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLF 670
IEALF T + S+ + R PD+ D L ++ ++ P LF
Sbjct: 764 ---IEALFLLVTSVTLSLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF 808
>sp|A1A3N3|SYM_BIFAA Methionine--tRNA ligase OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=metG
PE=3 SV=1
Length = 620
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 96 SLHSEILSEASVNVISELIHYSAAGSSGGAT-----VNMPLIQVIVPQIMSLKAHLTDSS 150
+ HS+I SE++ Y+ GS GG T +NMP QV+ + M+++ SS
Sbjct: 300 TFHSQIWP-------SEMLAYNGQGSKGGETGKLGPLNMPE-QVVASEFMTMEGKKFSSS 351
Query: 151 KD----EEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNF 206
+ +D+ +AR D Y+ + S +S E H ++A+ N
Sbjct: 352 RGIVIYVKDI--LARYPVDAVRYYISVAGPESSDSDF---TWAEFVRHNNEELAASWGNL 406
Query: 207 WHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQ 256
+ + ++ K I +EASA E L ++A+E++ L+ Q
Sbjct: 407 VNRVANLINKNFGEIPAFDEASATDEDRALLAETKAAFETVGGLIENHRQ 456
>sp|Q9Z275|RLBP1_MOUSE Retinaldehyde-binding protein 1 OS=Mus musculus GN=Rlbp1 PE=2 SV=3
Length = 317
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 233 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVM 292
R+R+ V R AYE L V+FR+QYP+ + LS+E L+ Y S VM
Sbjct: 101 RARKFDVGR-AYELLKGYVNFRLQYPELFDSLSMEALRCTIEAGYPGVLSSRDKYGRVVM 159
Query: 293 LIAVAD 298
L + +
Sbjct: 160 LFNIEN 165
>sp|Q54C85|IP13A_DICDI Importin-13 homolog A OS=Dictyostelium discoideum GN=ipo13A PE=3
SV=1
Length = 1064
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 77/421 (18%), Positives = 165/421 (39%), Gaps = 66/421 (15%)
Query: 4 HPEFVPGFLELLTVLPEEVFNYKIAARPERRR---QFEKELTSQMEVALSTLTACLHINE 60
+P V LELLT+ PEE+ N + +R + QF K + E+ ++ +
Sbjct: 160 NPNLVNLTLELLTIFPEELTNADYITQEKRNKVGLQFNKHNSKVFEILCKIMSLPQNQQT 219
Query: 61 L--KEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL-HSEILSEASVNVISELIHYS 117
L + L+ F SW+ P L L+L ++ ++ L E + V+ E+ +
Sbjct: 220 LIFMKSSLKCFKSWILFDCS-PREYLIDSDLILKCFEAVSNNPKLVEDFLMVLDEMFTFM 278
Query: 118 AA----GSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL 173
+ ++ + I +I P L ++ + I LF+ + +++++
Sbjct: 279 GGKIFRSYTSAFSLVLSRILMIFPSFYILALQ-----EENQIFNQIFLLFSHIAENHIKT 333
Query: 174 IATGSDESMLIVHALLEVASHPEY-----------DIASMTFNFWHSLQVILTKRDSYIS 222
+ + S AL+++A ++ +IA++ H L + ++ +
Sbjct: 334 LLKNPELSNNFFKALIQMALKGDFETCELLSPVITEIAAL-----HELHSTSSTTEATTT 388
Query: 223 FGNEASAEAERSR-RLQVFRSAYESLVSLVSFRVQYP--QDYQDLSLEDLKEFKHTRYDL 279
+ S + + +V + + YP +D DL ED ++F R
Sbjct: 389 TIATTTTPTTTSDCDISGWYQYLGEMVEVFRLKSMYPLDKDISDLYEEDAEKFFAFR--- 445
Query: 280 ACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILY-----IKFVEGVACCGNKHNEW 334
+ D +++ ++L G ++L I+ C W
Sbjct: 446 --------------VIAGDSVLEVYNILEGKILQQLLNSLWSDIQSFPTTKC-------W 484
Query: 335 RPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAA 393
+ EA ++ + +S ++ + E +PQ+ ++L +LP Q L+++ G YS D +
Sbjct: 485 QSIEATIYLLSCLSESIT-EDTEFVPQLFSILGQLPIQSTPLIKSTMTLAGNYSNLIDKS 543
Query: 394 S 394
+
Sbjct: 544 T 544
>sp|Q54WT9|IP13B_DICDI Importin-13 homolog B OS=Dictyostelium discoideum GN=ipo13B PE=3
SV=1
Length = 1119
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 309 GDATLKILYIKF-VEGV-ACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL 366
D K ++KF +E + A K W E+ L+ I A S + E +P ++ ++
Sbjct: 539 NDIIPKSTFLKFLIEKLNAFINEKCPHWEQYESILYYIYAFSGGSQDGQLEYVPILLNII 598
Query: 367 PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAF 425
P +P + L++T IG YS + ++ LA V+S L +S +E +AA+ +
Sbjct: 599 PLIPIKSIPLVRTSIKLIGRYSSFL---KTNTDYLAKVVSDLLPALSHAELIGSAAS-SL 654
Query: 426 RHIC--DDCRKKLCGYLDGL 443
IC D C L + + +
Sbjct: 655 LSICVSDKCSTMLWPHFNQI 674
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 34.3 bits (77), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 620 CASYLHNLIEAL-FKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPS 678
CA +L+ + A RT C+ S+EE + CF+ I P LF+PS++ +
Sbjct: 770 CAPHLYTFVLATEHTRTQCIKISLEEHGAAILQNTSCFV-----IGIMPLLFVPSNLTYT 824
Query: 679 LVDCSMI--GITVQH 691
L CS++ G TV H
Sbjct: 825 LFKCSLLTAGCTVLH 839
>sp|Q55CQ7|TNPO_DICDI Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1
Length = 931
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 329 NKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLL--QTVCLTIGAY 386
N+ N W E+A+ + AI+ A + +V+ L P+ L C T+ Y
Sbjct: 440 NEQNPWPVRESAILALGAIADGSKNGLAPHLSKVIPYLINTLNDPKPLVRSITCWTLSRY 499
Query: 387 SKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNV 446
S W A + V+++L + ++ AA AF + ++ L YL +
Sbjct: 500 SYWIAQADGRDYLHPLVVNLLNRIVDNNKKVQEAACSAFATLEEEADLLLIPYLQM---I 556
Query: 447 YRTAVNGEGSLKVSAEDSLHLVEALS 472
T VN G K A++ L L +A+S
Sbjct: 557 LVTFVNAFG--KYQAKNLLILYDAIS 580
>sp|A5GJD1|PURA_SYNPW Adenylosuccinate synthetase OS=Synechococcus sp. (strain WH7803)
GN=purA PE=3 SV=1
Length = 437
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 427 HICD--------DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 475
H+CD R++ CG+ DG+ Y VNG L V+ D L ++AL + +
Sbjct: 288 HLCDRGGEFGTTTGRRRRCGWFDGVIGRYAVEVNGLDCLAVTKLDVLDEIDALQVCV 344
>sp|A3QGM9|RLMM_SHELP Ribosomal RNA large subunit methyltransferase M OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rlmM PE=3 SV=1
Length = 363
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 454 EGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 513
EG D+L V + E P + K L C + PL++ + + +L+K++
Sbjct: 82 EGDRVTPIVDALAKVHRAGELRVETPDTNEAKELSTFCRKLTVPLRQALKRSGALLEKEN 141
Query: 514 PRDLTVHI 521
P+ +H+
Sbjct: 142 PKRPIIHV 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,882,189
Number of Sequences: 539616
Number of extensions: 10641262
Number of successful extensions: 30533
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 30464
Number of HSP's gapped (non-prelim): 30
length of query: 843
length of database: 191,569,459
effective HSP length: 126
effective length of query: 717
effective length of database: 123,577,843
effective search space: 88605313431
effective search space used: 88605313431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)