Query 003155
Match_columns 843
No_of_seqs 176 out of 1059
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 18:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 8.5E-78 1.8E-82 659.8 67.4 763 8-821 147-977 (982)
2 KOG2021 Nuclear mRNA export fa 100.0 3.3E-52 7.1E-57 449.1 48.8 755 2-818 140-976 (980)
3 KOG2081 Nuclear transport regu 100.0 1.2E-51 2.6E-56 438.7 38.3 443 3-497 109-557 (559)
4 COG5101 CRM1 Importin beta-rel 100.0 1.8E-46 3.9E-51 396.7 52.8 772 12-820 156-1030(1053)
5 KOG2023 Nuclear transport rece 100.0 1.2E-37 2.6E-42 332.9 37.9 664 42-820 123-833 (885)
6 KOG2171 Karyopherin (importin) 100.0 2.7E-26 5.9E-31 263.1 51.8 483 40-593 111-613 (1075)
7 KOG1241 Karyopherin (importin) 100.0 3E-25 6.5E-30 242.5 48.1 531 42-629 124-683 (859)
8 KOG2020 Nuclear transport rece 99.9 7.9E-23 1.7E-27 239.9 46.7 770 4-816 146-1007(1041)
9 COG5215 KAP95 Karyopherin (imp 99.9 4.3E-18 9.3E-23 180.6 51.9 514 42-617 128-673 (858)
10 PF08767 CRM1_C: CRM1 C termin 99.8 2.1E-17 4.6E-22 176.4 23.7 229 580-820 65-316 (319)
11 KOG2023 Nuclear transport rece 99.4 8.5E-10 1.8E-14 120.5 36.9 578 58-708 187-818 (885)
12 KOG2171 Karyopherin (importin) 99.4 4.1E-07 8.9E-12 106.7 54.7 407 2-492 129-565 (1075)
13 KOG1991 Nuclear transport rece 99.4 1.3E-06 2.9E-11 100.7 57.5 641 4-689 34-780 (1010)
14 KOG1241 Karyopherin (importin) 99.2 3.8E-06 8.3E-11 94.2 45.6 278 331-628 418-725 (859)
15 PF08389 Xpo1: Exportin 1-like 99.1 5.8E-11 1.3E-15 113.4 5.3 105 3-110 37-148 (148)
16 KOG1992 Nuclear export recepto 99.1 3E-06 6.6E-11 95.6 39.4 401 157-613 265-710 (960)
17 KOG2274 Predicted importin 9 [ 98.8 0.00016 3.5E-09 83.0 40.8 321 296-634 382-758 (1005)
18 KOG1824 TATA-binding protein-i 98.5 0.0045 9.7E-08 71.8 45.8 520 89-707 175-722 (1233)
19 KOG0915 Uncharacterized conser 98.2 0.0095 2.1E-07 72.6 36.0 320 236-633 988-1322(1702)
20 KOG1242 Protein containing ada 98.1 0.0088 1.9E-07 67.0 32.3 165 296-479 239-447 (569)
21 KOG1824 TATA-binding protein-i 97.9 0.095 2.1E-06 61.3 48.7 326 332-707 831-1186(1233)
22 KOG0213 Splicing factor 3b, su 97.9 0.083 1.8E-06 60.1 42.0 175 296-479 736-915 (1172)
23 KOG1410 Nuclear transport rece 97.9 0.078 1.7E-06 59.6 56.1 652 5-707 142-937 (1082)
24 PF08506 Cse1: Cse1; InterPro 97.8 0.00012 2.7E-09 79.8 11.9 208 183-425 141-370 (370)
25 COG5215 KAP95 Karyopherin (imp 97.7 0.13 2.7E-06 57.1 38.0 291 357-669 494-814 (858)
26 KOG0212 Uncharacterized conser 97.5 0.066 1.4E-06 59.2 26.6 378 331-736 11-442 (675)
27 KOG4541 Nuclear transport rece 97.5 0.12 2.7E-06 56.8 28.1 385 417-820 313-743 (748)
28 COG5656 SXM1 Importin, protein 97.5 0.35 7.6E-06 55.4 56.2 270 308-596 401-691 (970)
29 PF01602 Adaptin_N: Adaptin N 97.4 0.23 5E-06 58.0 32.5 326 312-707 76-406 (526)
30 KOG1993 Nuclear transport rece 96.6 1.7 3.6E-05 50.6 27.4 142 373-533 501-648 (978)
31 PLN03200 cellulose synthase-in 96.0 7.2 0.00016 51.6 31.6 95 333-432 459-561 (2102)
32 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.05 1.1E-06 47.1 9.0 75 376-452 3-78 (97)
33 KOG2274 Predicted importin 9 [ 95.9 3.5 7.7E-05 48.8 25.6 215 398-635 445-668 (1005)
34 PF03378 CAS_CSE1: CAS/CSE pro 95.9 0.31 6.7E-06 54.7 17.2 212 433-708 17-230 (435)
35 KOG1248 Uncharacterized conser 95.8 6.9 0.00015 47.9 51.9 183 561-766 713-903 (1176)
36 KOG0166 Karyopherin (importin) 95.6 0.88 1.9E-05 51.2 18.9 216 332-573 164-392 (514)
37 KOG1991 Nuclear transport rece 95.5 7.8 0.00017 46.6 50.3 200 372-635 431-650 (1010)
38 KOG1059 Vesicle coat complex A 95.5 5.7 0.00012 46.0 24.6 32 181-212 334-365 (877)
39 COG5181 HSH155 U2 snRNP splice 95.2 7.2 0.00016 44.3 31.8 278 342-669 585-875 (975)
40 COG5064 SRP1 Karyopherin (impo 95.2 0.18 3.9E-06 52.4 10.9 106 318-431 160-273 (526)
41 PTZ00429 beta-adaptin; Provisi 95.0 11 0.00024 45.4 36.7 87 371-473 152-245 (746)
42 PF12460 MMS19_C: RNAPII trans 95.0 8 0.00017 43.6 33.5 156 331-498 201-374 (415)
43 COG5181 HSH155 U2 snRNP splice 94.9 8 0.00017 43.9 23.0 270 87-435 603-875 (975)
44 KOG0213 Splicing factor 3b, su 94.8 10 0.00023 44.0 31.9 353 296-708 496-871 (1172)
45 PF12755 Vac14_Fab1_bd: Vacuol 94.5 0.076 1.6E-06 46.0 5.4 89 337-428 3-94 (97)
46 cd00020 ARM Armadillo/beta-cat 94.5 0.074 1.6E-06 47.9 5.7 96 331-430 18-120 (120)
47 PF10508 Proteasom_PSMB: Prote 94.4 13 0.00027 43.1 32.1 131 333-479 51-192 (503)
48 PF13513 HEAT_EZ: HEAT-like re 94.3 0.015 3.3E-07 44.5 0.7 53 334-386 1-55 (55)
49 PF08767 CRM1_C: CRM1 C termin 94.3 2.4 5.2E-05 45.8 17.7 175 60-256 42-224 (319)
50 PF14500 MMS19_N: Dos2-interac 94.2 3.6 7.8E-05 42.9 18.0 235 371-628 11-252 (262)
51 PF10508 Proteasom_PSMB: Prote 94.0 15 0.00032 42.6 31.3 340 296-669 58-425 (503)
52 PF12460 MMS19_C: RNAPII trans 94.0 13 0.00028 41.9 30.6 76 650-738 338-413 (415)
53 KOG1062 Vesicle coat complex A 93.7 19 0.0004 42.5 27.6 72 372-445 479-558 (866)
54 KOG0166 Karyopherin (importin) 93.2 2.2 4.8E-05 48.0 15.1 215 336-575 127-352 (514)
55 PF13513 HEAT_EZ: HEAT-like re 92.7 0.11 2.3E-06 39.8 2.9 54 373-428 1-55 (55)
56 COG5064 SRP1 Karyopherin (impo 92.7 3.9 8.5E-05 42.9 14.7 236 331-592 127-379 (526)
57 KOG1242 Protein containing ada 92.6 23 0.0005 40.6 22.9 237 331-582 186-452 (569)
58 PF12348 CLASP_N: CLASP N term 92.4 1.2 2.6E-05 45.6 11.2 137 331-479 18-163 (228)
59 KOG2081 Nuclear transport regu 92.0 3.3 7.2E-05 46.5 14.3 240 546-795 115-370 (559)
60 PF03378 CAS_CSE1: CAS/CSE pro 91.8 7.8 0.00017 43.7 17.3 286 399-707 23-324 (435)
61 PF01602 Adaptin_N: Adaptin N 91.6 32 0.00069 40.0 32.1 163 296-480 96-261 (526)
62 smart00802 UME Domain in UVSB 90.5 4.5 9.7E-05 35.7 11.0 93 399-498 8-105 (107)
63 PLN03200 cellulose synthase-in 89.3 96 0.0021 41.8 33.7 394 334-772 418-871 (2102)
64 PTZ00429 beta-adaptin; Provisi 89.2 60 0.0013 39.4 41.4 224 372-655 310-537 (746)
65 KOG0915 Uncharacterized conser 88.5 84 0.0018 40.2 39.8 258 337-610 920-1196(1702)
66 PRK09687 putative lyase; Provi 87.7 40 0.00088 35.6 18.6 137 306-474 49-186 (280)
67 PF12717 Cnd1: non-SMC mitotic 87.5 14 0.0003 36.2 13.4 143 340-494 8-155 (178)
68 PF08064 UME: UME (NUC010) dom 87.4 9.6 0.00021 33.7 11.1 92 400-498 9-105 (107)
69 KOG1240 Protein kinase contain 86.5 97 0.0021 38.7 22.5 69 48-120 423-496 (1431)
70 PF12348 CLASP_N: CLASP N term 85.8 36 0.00077 34.6 16.2 136 558-706 66-205 (228)
71 PF02985 HEAT: HEAT repeat; I 85.3 1.1 2.3E-05 29.6 2.9 30 403-432 1-31 (31)
72 KOG1943 Beta-tubulin folding c 85.2 54 0.0012 40.3 18.5 132 335-478 443-613 (1133)
73 PF08167 RIX1: rRNA processing 83.2 19 0.00041 34.7 11.9 132 312-450 22-163 (165)
74 KOG1061 Vesicle coat complex A 83.0 34 0.00075 40.3 15.5 102 542-654 404-518 (734)
75 KOG1058 Vesicle coat complex C 80.9 1.2E+02 0.0027 35.8 18.5 186 158-412 283-480 (948)
76 KOG2956 CLIP-associating prote 80.8 48 0.001 36.9 14.7 176 379-588 313-492 (516)
77 KOG1059 Vesicle coat complex A 79.4 1.4E+02 0.003 35.3 24.5 98 343-448 129-228 (877)
78 PF10274 ParcG: Parkin co-regu 78.9 15 0.00033 35.7 9.3 89 400-493 36-128 (183)
79 KOG4653 Uncharacterized conser 78.2 1.1E+02 0.0024 36.8 17.3 185 373-585 741-929 (982)
80 KOG1967 DNA repair/transcripti 76.1 13 0.00029 44.3 9.5 168 405-592 818-1001(1030)
81 PF13646 HEAT_2: HEAT repeats; 75.7 8.5 0.00018 32.2 6.2 75 331-425 11-87 (88)
82 cd00020 ARM Armadillo/beta-cat 75.5 6.1 0.00013 35.1 5.5 71 358-433 8-81 (120)
83 KOG0212 Uncharacterized conser 75.3 1.6E+02 0.0034 33.8 26.4 336 408-780 6-369 (675)
84 PF02985 HEAT: HEAT repeat; I 75.3 4 8.7E-05 26.8 3.1 21 331-351 11-31 (31)
85 KOG0168 Putative ubiquitin fus 74.9 2E+02 0.0043 34.7 23.6 100 334-433 226-367 (1051)
86 KOG1060 Vesicle coat complex A 74.4 2E+02 0.0043 34.4 25.1 354 296-707 163-570 (968)
87 COG5101 CRM1 Importin beta-rel 73.8 1E+02 0.0023 35.6 15.1 164 541-707 190-371 (1053)
88 PF08167 RIX1: rRNA processing 73.6 23 0.0005 34.1 9.3 129 626-771 21-153 (165)
89 PF13646 HEAT_2: HEAT repeats; 73.5 19 0.00042 29.9 7.9 86 360-472 2-88 (88)
90 PF04388 Hamartin: Hamartin pr 72.9 1.1E+02 0.0023 36.9 16.3 159 647-821 80-261 (668)
91 PF04826 Arm_2: Armadillo-like 72.7 1.2E+02 0.0027 31.4 17.9 134 332-477 25-164 (254)
92 PF12717 Cnd1: non-SMC mitotic 71.7 46 0.00099 32.4 11.0 129 648-799 1-138 (178)
93 KOG1992 Nuclear export recepto 71.4 2.3E+02 0.0051 34.0 48.9 228 579-814 541-787 (960)
94 PF08623 TIP120: TATA-binding 69.4 20 0.00044 34.4 7.6 77 373-453 41-117 (169)
95 PF05918 API5: Apoptosis inhib 68.9 2.3E+02 0.005 32.9 22.4 72 372-453 35-107 (556)
96 KOG2021 Nuclear mRNA export fa 66.4 2.8E+02 0.0062 33.0 26.7 146 305-453 632-791 (980)
97 PF13251 DUF4042: Domain of un 65.8 1.3E+02 0.0029 29.4 12.5 101 416-530 55-175 (182)
98 PF08064 UME: UME (NUC010) dom 64.5 1E+02 0.0022 27.2 12.0 99 488-595 6-105 (107)
99 PF08506 Cse1: Cse1; InterPro 63.1 2.4E+02 0.0053 31.1 21.2 123 563-692 229-360 (370)
100 KOG4524 Uncharacterized conser 62.8 3.7E+02 0.008 33.1 23.5 108 296-412 568-684 (1014)
101 PF12719 Cnd3: Nuclear condens 62.3 2.2E+02 0.0047 30.3 18.3 127 340-477 3-144 (298)
102 PF11865 DUF3385: Domain of un 58.5 1.5E+02 0.0034 28.2 11.5 71 402-477 86-158 (160)
103 KOG1967 DNA repair/transcripti 58.4 1.6E+02 0.0034 35.8 13.3 84 338-422 924-1016(1030)
104 KOG2753 Uncharacterized conser 57.6 2.7E+02 0.0058 29.8 13.7 73 399-478 104-178 (378)
105 KOG1993 Nuclear transport rece 56.6 4.3E+02 0.0093 31.9 26.8 117 459-583 519-653 (978)
106 PF01603 B56: Protein phosphat 55.2 3.5E+02 0.0075 30.4 15.7 48 722-769 327-378 (409)
107 PF14668 RICTOR_V: Rapamycin-i 54.8 16 0.00035 29.7 3.4 52 336-388 3-58 (73)
108 KOG0168 Putative ubiquitin fus 53.1 5E+02 0.011 31.6 19.6 135 416-577 227-367 (1051)
109 KOG2753 Uncharacterized conser 52.8 3.2E+02 0.0069 29.3 15.4 66 458-537 57-122 (378)
110 KOG2022 Nuclear transport rece 51.5 5.3E+02 0.012 31.5 31.7 148 370-542 478-631 (982)
111 KOG2956 CLIP-associating prote 51.2 4E+02 0.0088 30.0 16.7 152 438-616 325-481 (516)
112 COG5657 CSE1 CAS/CSE protein i 49.2 5.8E+02 0.013 31.3 20.2 58 417-479 509-566 (947)
113 PF05918 API5: Apoptosis inhib 48.8 5E+02 0.011 30.3 19.4 22 556-577 144-165 (556)
114 PF10363 DUF2435: Protein of u 48.0 1.8E+02 0.0038 24.9 9.1 68 415-489 18-85 (92)
115 smart00802 UME Domain in UVSB 47.7 2E+02 0.0043 25.4 12.0 72 518-595 33-105 (107)
116 KOG1062 Vesicle coat complex A 47.1 6E+02 0.013 30.7 29.7 248 518-818 125-397 (866)
117 PF10274 ParcG: Parkin co-regu 45.5 3E+02 0.0066 26.9 12.0 82 462-554 53-135 (183)
118 PF10350 DUF2428: Putative dea 44.9 3.8E+02 0.0082 27.8 14.7 119 417-545 113-242 (255)
119 KOG1525 Sister chromatid cohes 44.8 8.3E+02 0.018 31.7 24.0 225 521-773 23-263 (1266)
120 PRK09687 putative lyase; Provi 44.5 1.4E+02 0.0029 31.6 9.5 81 331-430 170-250 (280)
121 KOG2256 Predicted protein invo 43.0 6.2E+02 0.014 29.8 21.5 215 372-596 255-478 (661)
122 KOG2011 Sister chromatid cohes 39.8 6.2E+02 0.013 31.8 14.8 90 610-708 266-356 (1048)
123 KOG3723 PH domain protein Melt 39.6 1.7E+02 0.0037 33.3 9.3 67 340-415 182-249 (851)
124 PF14676 FANCI_S2: FANCI solen 38.8 3E+02 0.0065 26.2 9.9 82 731-821 55-140 (158)
125 KOG4653 Uncharacterized conser 36.3 8.9E+02 0.019 29.6 18.5 171 310-503 767-944 (982)
126 PF08389 Xpo1: Exportin 1-like 36.0 2.3E+02 0.005 25.9 8.9 119 561-681 4-133 (148)
127 PF08146 BP28CT: BP28CT (NUC21 34.6 2.7E+02 0.0059 26.3 8.9 64 603-672 41-104 (153)
128 PF10441 Urb2: Urb2/Npa2 famil 33.6 5.2E+02 0.011 26.1 17.7 55 433-491 146-200 (223)
129 smart00638 LPD_N Lipoprotein N 33.6 8.5E+02 0.018 28.6 16.9 86 296-391 342-429 (574)
130 PLN03076 ARF guanine nucleotid 33.5 1.4E+03 0.03 31.1 26.6 75 372-452 1196-1279(1780)
131 PF14911 MMS22L_C: S-phase gen 32.9 7.1E+02 0.015 27.5 21.3 88 648-738 224-322 (373)
132 KOG2137 Protein kinase [Signal 30.2 5E+02 0.011 30.9 11.5 114 303-427 377-493 (700)
133 KOG2549 Transcription initiati 30.2 9.1E+02 0.02 27.9 13.8 141 310-452 234-393 (576)
134 PF00514 Arm: Armadillo/beta-c 29.8 82 0.0018 21.9 3.5 27 404-430 14-41 (41)
135 COG5234 CIN1 Beta-tubulin fold 29.8 6.3E+02 0.014 30.1 11.9 242 439-709 243-493 (993)
136 COG5096 Vesicle coat complex, 29.6 4E+02 0.0086 32.3 10.9 84 356-449 122-211 (757)
137 KOG1060 Vesicle coat complex A 29.3 1.1E+03 0.024 28.6 34.6 75 331-415 47-121 (968)
138 PF11864 DUF3384: Domain of un 29.3 9E+02 0.019 27.6 24.0 91 648-740 147-259 (464)
139 KOG2032 Uncharacterized conser 28.2 9.3E+02 0.02 27.4 20.6 99 399-505 255-354 (533)
140 KOG0889 Histone acetyltransfer 27.9 2.1E+03 0.046 31.5 21.8 170 579-763 626-798 (3550)
141 KOG1240 Protein kinase contain 27.4 3.4E+02 0.0073 34.3 9.8 116 372-494 591-743 (1431)
142 KOG1943 Beta-tubulin folding c 27.1 1.4E+03 0.029 28.9 29.9 245 359-615 339-615 (1133)
143 KOG4224 Armadillo repeat prote 27.0 1.8E+02 0.004 31.4 6.8 126 358-497 209-341 (550)
144 PF11707 Npa1: Ribosome 60S bi 26.9 8.3E+02 0.018 26.4 15.5 142 604-760 26-183 (330)
145 KOG2038 CAATT-binding transcri 25.2 1.3E+03 0.028 28.0 18.0 53 373-431 318-371 (988)
146 PF10441 Urb2: Urb2/Npa2 famil 25.2 7.2E+02 0.016 25.1 14.5 131 645-775 48-200 (223)
147 PF05804 KAP: Kinesin-associat 25.1 1.3E+03 0.028 28.0 24.6 87 356-447 330-420 (708)
148 PF12765 Cohesin_HEAT: HEAT re 24.9 65 0.0014 23.0 2.2 39 68-110 2-42 (42)
149 PF08349 DUF1722: Protein of u 24.2 3.7E+02 0.008 24.1 7.5 32 769-801 53-84 (117)
150 KOG0414 Chromosome condensatio 23.8 1.2E+03 0.027 29.6 13.6 223 539-817 915-1140(1251)
151 KOG2011 Sister chromatid cohes 23.1 1.6E+03 0.035 28.4 19.1 102 336-445 262-368 (1048)
152 PF11919 DUF3437: Domain of un 22.4 98 0.0021 26.4 3.2 58 335-395 4-62 (90)
153 cd08050 TAF6 TATA Binding Prot 20.9 1.1E+03 0.024 25.7 13.2 37 416-452 283-319 (343)
154 COG5116 RPN2 26S proteasome re 20.8 3.8E+02 0.0082 30.9 8.0 86 358-452 586-672 (926)
155 PF02216 B: B domain; InterPr 20.7 1.6E+02 0.0035 22.1 3.5 18 780-797 19-36 (54)
156 KOG2611 Neurochondrin/leucine- 20.7 1.3E+03 0.028 26.3 14.5 138 520-670 83-231 (698)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-78 Score=659.77 Aligned_cols=763 Identities=18% Similarity=0.307 Sum_probs=627.0
Q ss_pred hHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhch----------hhHHHHHHHHHHHHhcCC
Q 003155 8 VPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKH 77 (843)
Q Consensus 8 ~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----------~~~~~~L~cl~sWi~~~~ 77 (843)
-.++|+.|+.+|||..+.++ +..||..++.+|.+....|.+++..+++.. -.+..+++|..+|+++.
T Consensus 147 ~~~~Le~Ls~~p~e~q~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i- 223 (982)
T KOG2022|consen 147 CEILLEVLSFMPAEFQHVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI- 223 (982)
T ss_pred HHHHHHHhccCcHhhhhccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 46889999999999998776 477889999999999999999999888752 26678999999999963
Q ss_pred CCCCcccccchhHHHHHhhcC-----------------CCcchHHHHHHHHHHHhhhc-cCCCCCccCcHhHHHHHHHHH
Q 003155 78 RIPGSVLASHPLVLTALSSLH-----------------SEILSEASVNVISELIHYSA-AGSSGGATVNMPLIQVIVPQI 139 (843)
Q Consensus 78 ~i~~~~l~~~~ll~~~~~~L~-----------------~~~~~~~A~~~l~eii~~~~-~~~~~~~~~~~~li~~l~~~~ 139 (843)
+.+. .....++..++..+. ...+.+..+......+.... .++++++.+-.++...+...+
T Consensus 224 ~~~~--~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~ 301 (982)
T KOG2022|consen 224 SLTG--MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEV 301 (982)
T ss_pred cccc--ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHH
Confidence 2332 222344444554444 11222323333332222111 122221111111112212222
Q ss_pred HhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCC------chHHHHHHHHHhhccCCC-----cchhhhhHHHHH
Q 003155 140 MSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWH 208 (843)
Q Consensus 140 ~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~------~~~~~ll~~ll~~~~~~~-----~~vs~~~~~FW~ 208 (843)
....+...+++..+|....+++++++.+|++.+.+.++. +.+.++++.|+.|++.|+ +.+|..++.||+
T Consensus 302 ~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~ 381 (982)
T KOG2022|consen 302 SGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWY 381 (982)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHH
Confidence 222222322333367788999999999999999987642 236789999999999995 679999999999
Q ss_pred HHHHHhcccccccccCcccchHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhccccccCCC
Q 003155 209 SLQVILTKRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSS 285 (843)
Q Consensus 209 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~k~~~p~d--~~~~~~e~~e~f~~~R~~~~~~~~~ 285 (843)
+|+|++... .++.. +.....++ |+|.+|++++++|+.+|++ +..|+.|++|.|++||+|
T Consensus 382 tL~dei~~~------~~e~~-----~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d------- 443 (982)
T KOG2022|consen 382 TLQDEIMQT------INETQ-----QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD------- 443 (982)
T ss_pred HHHHHHHHh------hhccC-----CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-------
Confidence 999987632 11110 11223455 9999999999999999984 678999999999999999
Q ss_pred cchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhh
Q 003155 286 TLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL 365 (843)
Q Consensus 286 ~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~ 365 (843)
++|+++++|+++| +.++..+.+.+.+.+..+...+.+|.+.|+|+|++.++++.+..++++.++.+++.
T Consensus 444 ----------iSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~ 512 (982)
T KOG2022|consen 444 ----------ISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFET 512 (982)
T ss_pred ----------HHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHh
Confidence 9999999999999 78999999999998865433466799999999999999999999999999999999
Q ss_pred ccCCC---CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHH
Q 003155 366 LPKLP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDG 442 (843)
Q Consensus 366 l~~lp---~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~ 442 (843)
..+.+ .+|.+.+|+..++|.|+.|+.+||. ++.+.++.+++++++++ ....|..++++||++|+.+|.||+++
T Consensus 513 ~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~ 588 (982)
T KOG2022|consen 513 SASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQ 588 (982)
T ss_pred ccccccccCChhHHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHH
Confidence 87664 2799999999999999999999997 99999999999999887 78888889999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHH
Q 003155 443 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 522 (843)
Q Consensus 443 li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 522 (843)
++..+..++.. .+..+.++.+++.+||+|.+.+.+|++.+++.++++|+++.++.++....+.+++ ....+..+.
T Consensus 589 ~~a~~~e~l~~---~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~--~l~~~~~l~ 663 (982)
T KOG2022|consen 589 FSAVCYEVLNK---SNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQEN--HLRIAFQLN 663 (982)
T ss_pred HHHHHHHHhcc---cccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHH
Confidence 99999999875 2567899999999999999999999999999999999999999998755443221 122445589
Q ss_pred HHHHhhhccCCc------------------chHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhh-hhh
Q 003155 523 RFAYIFRYVNHP------------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GIT 583 (843)
Q Consensus 523 ~l~~~~~~~~~~------------------~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~-~p~ 583 (843)
++++++.++..+ -|++.+.++++|++..++..|.++.+++|.+|...+++++..++.+ .|+
T Consensus 664 ~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~ 743 (982)
T KOG2022|consen 664 TISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPM 743 (982)
T ss_pred HHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhh
Confidence 999999987531 1677889999999999999999999999999999999999988777 899
Q ss_pred HHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHH
Q 003155 584 IGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCI 663 (843)
Q Consensus 584 l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~ 663 (843)
+|.+..+++. |.+.+...-+.+..+++..+..++.+.+.+...+...+++++-++.+. .+.++||+...||+|+..++
T Consensus 744 l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~il 821 (982)
T KOG2022|consen 744 LPSLCPFIVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQH-PFSNQPDIYLQLIGFVRQIL 821 (982)
T ss_pred HHHHHHHHHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHH
Confidence 9999999998 998888888999999999988888899999999999999999888753 37999999999999999999
Q ss_pred hhCCCcccC-cCCcHHHHH-HHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcc
Q 003155 664 RYCPQLFIP-SSVFPSLVD-CSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLT 741 (843)
Q Consensus 664 ~~~p~~~~~-s~~l~~i~~-~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~ 741 (843)
++.|+.+.+ ...+++++. |+..+++.+|+.+++++++||+.++...++.. ...+.+++.+.|+.++.+++.|++
T Consensus 822 kk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~----~~tv~~~V~~~G~~Li~~im~~vg 897 (982)
T KOG2022|consen 822 KKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHD----LVTVTSVVAEIGPILIYAIMRGVG 897 (982)
T ss_pred HhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccch----hHHHHHHHHhcchHHHHHHHHHhc
Confidence 999999988 445776665 99999999999999999999999997554311 345889999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHh
Q 003155 742 GALPSSRLETVTYALLALTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCR 819 (843)
Q Consensus 742 ~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~--~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r 819 (843)
|..+||.++.++|+|++++++|+.+++.|++++++ +||+.++|+++|++|+++|+++| .|+|.+++.+.+|+..||
T Consensus 898 g~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer--~n~R~~k~~il~~~L~~~ 975 (982)
T KOG2022|consen 898 GEASRSTLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRER--GNKRNFKQQILEFNLACT 975 (982)
T ss_pred CcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999994 99999999999999999999986 688999999999999999
Q ss_pred hh
Q 003155 820 RN 821 (843)
Q Consensus 820 ~~ 821 (843)
|.
T Consensus 976 ~l 977 (982)
T KOG2022|consen 976 GL 977 (982)
T ss_pred CC
Confidence 96
No 2
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-52 Score=449.15 Aligned_cols=755 Identities=13% Similarity=0.141 Sum_probs=548.9
Q ss_pred CCCCCchHHHHHHhhhccccccCccccCCh---hHHHHHHHHH-HHhHHHHHHHHHHhhhc------hhhHHHHHHHHHH
Q 003155 2 NSHPEFVPGFLELLTVLPEEVFNYKIAARP---ERRRQFEKEL-TSQMEVALSTLTACLHI------NELKEQVLEAFAS 71 (843)
Q Consensus 2 ~~~~~~~~~~L~~L~~lpEE~~~~~~~~~~---~~r~~~~~~l-~~~~~~Vl~~l~~~l~~------~~~~~~~L~cl~s 71 (843)
||..+++.+++.+|..+..|+.+.....++ .+-+.+|+.| .++.|.+.+...++++. +++...+|+|+++
T Consensus 140 ~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~ 219 (980)
T KOG2021|consen 140 DSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGS 219 (980)
T ss_pred ccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 344456999999999999999987654443 2235688999 66678877776666653 5789999999999
Q ss_pred HHhcCCCCCCcccccchhHHHHHhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHH-hhcc
Q 003155 72 WLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL-TDSS 150 (843)
Q Consensus 72 Wi~~~~~i~~~~l~~~~ll~~~~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l-~~~~ 150 (843)
|++| |+.+++++.+++++++++|..+++|.+|++|+.++++++|++ - +++++++.+ .+..++..-. .++.
T Consensus 220 fVSW---IdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP--~---dKL~lln~L-~q~l~lfg~~s~dq~ 290 (980)
T KOG2021|consen 220 FVSW---IDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKP--M---DKLALLNML-NQTLELFGYHSADQM 290 (980)
T ss_pred Hhhh---hhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCh--h---HHHHHHHHH-HHHHHHHhhhccccc
Confidence 9996 889999999999999999999999999999999999999973 2 567776644 2233332222 1234
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHc----CC--------chHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccc
Q 003155 151 KDEEDVKAIARLFADMGDSYVELIAT----GS--------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD 218 (843)
Q Consensus 151 ~d~~~~~~l~~l~~~~~e~~~~~l~~----~~--------~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~ 218 (843)
+|.|..+.++++++++|.+....+.+ .+ ......+.+|++..+|.+++++.-+++||+.+...+++..
T Consensus 291 ~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~ 370 (980)
T KOG2021|consen 291 DDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLK 370 (980)
T ss_pred cCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcc
Confidence 77889999999999999887655433 11 1244688999999999999999999999999998886522
Q ss_pred cccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---CC-CChhhhHHhHhhhccccccCCCcchhhhhhc
Q 003155 219 SYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY---QD-LSLEDLKEFKHTRYDLACCSSSTLTESVMLI 294 (843)
Q Consensus 219 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~---~~-~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~ 294 (843)
+. .+..+-.+.+++.++++|+.|++.+ ++ -++||++.|.++|++
T Consensus 371 ---~l-------------s~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk---------------- 418 (980)
T KOG2021|consen 371 ---AL-------------SSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK---------------- 418 (980)
T ss_pred ---cc-------------cchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH----------------
Confidence 11 1122446778899999999999843 12 233667789999999
Q ss_pred hhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc----------ccchHHHhh
Q 003155 295 AVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE----------AEVMPQVMA 364 (843)
Q Consensus 295 ~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~----------~~~l~~l~~ 364 (843)
.. .+.+....+.|.-++..+.+.+...+.++ +..+|+.+|+++|.++.+||+++.+. +..+...+.
T Consensus 419 -Lk-~fqdti~~idpsl~l~~Ir~slS~al~ns--~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ 494 (980)
T KOG2021|consen 419 -LK-NFQDTIVVIDPSLFLNNIRQSLSAALMNS--KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNEL 494 (980)
T ss_pred -HH-HHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHH
Confidence 65 56665556676666666777777666554 36899999999999999999998762 123334444
Q ss_pred hc--cCCC--CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH--hccCCC-HHHHHHHHHHHHHHHHHhhhhhc
Q 003155 365 LL--PKLP--QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT--SGMSTS-EDTAAAAALAFRHICDDCRKKLC 437 (843)
Q Consensus 365 ~l--~~lp--~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~--~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~ 437 (843)
.+ .+.+ +|+.|+.-.+++|.||..||...++ ++|.++++++ +|+++. ++|+.+|++.|.++.+.-++.++
T Consensus 495 ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq---~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv 571 (980)
T KOG2021|consen 495 LLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQ---KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV 571 (980)
T ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHHHhcchh---hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 44 2334 3899999999999999999999886 8999999887 689875 35999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcc-------cCCCCCChhhHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhHHHHHHHHHHhcCC-c
Q 003155 438 GYLDGLYNVYRTAVNG-------EGSLKVSAEDSLHLVEALSMVITE--LPQVDAKKALEMLCLPVVTPLQEIINQGP-E 507 (843)
Q Consensus 438 ~~~~~li~~~~~~~~~-------~~~~~l~~~~~~~l~eaig~vi~~--~p~~~~~~~l~~l~~p~~~~l~~~~~~~~-~ 507 (843)
||++.+++.+++++.. ++......++++.+||++|.+|+. .|+|++..+...+++|.+.+..-....+. +
T Consensus 572 pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~la 651 (980)
T KOG2021|consen 572 PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLA 651 (980)
T ss_pred HHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHh
Confidence 9999999999999832 111124578999999999999975 68899999999999999876654433221 1
Q ss_pred cccccC--chhhHHHHHHHHHhhhccCC-----cc-hHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhh
Q 003155 508 ILQKKH--PRDLTVHIDRFAYIFRYVNH-----PE-AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 579 (843)
Q Consensus 508 ~~~~~~--~~~~~~~l~~l~~~~~~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~ 579 (843)
+++..+ ..+....+-.++++.++... .+ ....++.++..++..++..+...+.++.+++..++|++.++|+.
T Consensus 652 sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~ 731 (980)
T KOG2021|consen 652 SDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNK 731 (980)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchh
Confidence 111111 11222234556666665432 11 23446777788888888888888899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCC------cCCchHH
Q 003155 580 MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT------SRPDVAD 653 (843)
Q Consensus 580 ~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~------~~pD~~~ 653 (843)
+.|++|.+++.++.+....+...|+.++++++++|+.+ +.+.+.+|+..+..++++.+...+.+. +.-++++
T Consensus 732 vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~--~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek~~lrk 809 (980)
T KOG2021|consen 732 VLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTD--CYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEKILLRK 809 (980)
T ss_pred hhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHHHHHHH
Confidence 99999999999999998889999999999999999976 999999999999999999886422221 2345788
Q ss_pred HHHHHHHHHHhhCCCcc-cCc---CCcHHHHHHHHH-hccCCChhHHHHHHHHHHHhhc-cccCCCchhhHHHHHHHHhh
Q 003155 654 DCFLLASRCIRYCPQLF-IPS---SVFPSLVDCSMI-GITVQHREASNSILTFLSDIFD-LAKSCKGEEFLSVRDSVIIP 727 (843)
Q Consensus 654 ~~f~l~~~~~~~~p~~~-~~s---~~l~~i~~~~~~-~l~~~e~~~~~s~~~fl~~li~-~~~~~~~~~~~~~~~~~~~~ 727 (843)
+|++|+..++.+.-+.+ .+. .+++.++...+. +-...+|-..++.......+.. |.+.....+|.+.+- ..
T Consensus 810 sy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwggkdg~~gf~dfvl---k~ 886 (980)
T KOG2021|consen 810 SYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGGKDGDNGFKDFVL---KI 886 (980)
T ss_pred HHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCCcCCcccccccee---ec
Confidence 99999999998765444 432 234444433332 2234566555554444444333 222111112321111 11
Q ss_pred hhHHHHHHHHHHcc---cCCC----CCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc
Q 003155 728 RGASITRILIASLT---GALP----SSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAAS 800 (843)
Q Consensus 728 ~g~~lv~~ll~~l~---~~~p----~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~~~P~~~~t~~~~~~f~~~l~~~~~ 800 (843)
.|.. .++.... ++.. ...+-++|..++.+..+.++.+..||.+ ..||+.+++++..++|+++|.+-
T Consensus 887 ~~ln---~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~ek~gnecv~yL~q--~ylPs~q~pqela~qycqaLq~~-- 959 (980)
T KOG2021|consen 887 DGLN---KCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFEKSGNECVKYLTQ--IYLPSIQLPQELAIQYCQALQTM-- 959 (980)
T ss_pred cccc---ceeeecccCCcccccchHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HhcccccCCHHHHHHHHHHHhcc--
Confidence 1111 1111110 1111 1234578889999999999999999987 46999999999999999999853
Q ss_pred CCCchhhhH-HHHHHHHHH
Q 003155 801 GVDVNAAMA-PVEELSDVC 818 (843)
Q Consensus 801 ~~~~~~~~~-~~~~F~~~~ 818 (843)
+.+.|++ .+..|....
T Consensus 960 --d~k~Fk~~f~~~fis~l 976 (980)
T KOG2021|consen 960 --DQKQFKKWFVDNFISVL 976 (980)
T ss_pred --chhHHHHHHHHHHHHhc
Confidence 5678888 777776544
No 3
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-51 Score=438.68 Aligned_cols=443 Identities=36% Similarity=0.570 Sum_probs=382.8
Q ss_pred CCCCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhch-----hhHHHHHHHHHHHHhcCC
Q 003155 3 SHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKH 77 (843)
Q Consensus 3 ~~~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~-----~~~~~~L~cl~sWi~~~~ 77 (843)
++|..++++|++|+++|||+.+.+++.+..||.++++++..+.+.++.+|..+++.+ +...++|+|++||.+++
T Consensus 109 ~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~- 187 (559)
T KOG2081|consen 109 NKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLH- 187 (559)
T ss_pred cCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-
Confidence 445559999999999999999998888899999999999999999999999999874 36699999999999986
Q ss_pred CCCCcccccc-hhHHHHHhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHH
Q 003155 78 RIPGSVLASH-PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDV 156 (843)
Q Consensus 78 ~i~~~~l~~~-~ll~~~~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~ 156 (843)
.++.+.+.+. |++..+|..+.+++++++|++|++.+++...+.+.+ .....+.-+.+.++........+.+|.|..
T Consensus 188 ~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~---~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~ 264 (559)
T KOG2081|consen 188 VFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEG---LPLAAILFIGVIILETAFHLAMAGEDLDKN 264 (559)
T ss_pred cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhcc---CchhHHHhccccccchHHHHhhcccCHHHH
Confidence 5888877654 999999999999999999999999999877643211 112222222233333333344567888999
Q ss_pred HHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHH
Q 003155 157 KAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRR 236 (843)
Q Consensus 157 ~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~ 236 (843)
.++||+|+++||.+...+..+++++..+++.+|.+++|++.+|.+.+|.||+.+.+.+++.++ ...
T Consensus 265 ~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~--------------~~~ 330 (559)
T KOG2081|consen 265 EAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDD--------------DEA 330 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhcccc--------------HHH
Confidence 999999999999999999999888999999999999999999999999999999999987432 234
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHH
Q 003155 237 LQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKIL 316 (843)
Q Consensus 237 ~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l 316 (843)
...|+|++.+|++.+.++++||+|.++ ..|+.++|.+||.. ++|+++|+..++|.++++..+
T Consensus 331 ~~~frpy~~rLvs~l~~h~qlp~~~~~-l~Ee~~~f~~fR~~-----------------v~dvl~Dv~~iigs~e~lk~~ 392 (559)
T KOG2081|consen 331 LGIFRPYFLRLVSLLKRHVQLPPDQFD-LPEEESEFFEFRLK-----------------VGDVLKDVAFIIGSDECLKQM 392 (559)
T ss_pred HHHhHHHHHHHHHHHHHHccCCCcccc-CccchhHHHHHHHH-----------------HHHHHHHHHHHhCcHHHHHHH
Confidence 568999999999999999999995333 44667899999999 999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCC
Q 003155 317 YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD 396 (843)
Q Consensus 317 ~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~ 396 (843)
+..+.+ ++.+|+..||+||.+++++..++.++++.+|++++.+.++|.+..+|+|++.++|+|++|+..||.
T Consensus 393 ~~~l~e-------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~- 464 (559)
T KOG2081|consen 393 YIRLKE-------NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE- 464 (559)
T ss_pred HHHHcc-------CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH-
Confidence 988875 278999999999999999999999999999999999999998767999999999999999999997
Q ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHh
Q 003155 397 PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 397 ~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~ 476 (843)
++..+++++..++...+ ++++|+.+++++|..|+.++.++++++...+...... ..+.+... +.+|++.+|+
T Consensus 465 --~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~----~~~~e~a~-l~~~~s~i~~ 536 (559)
T KOG2081|consen 465 --LLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDST----QINEEAAC-LLQGISLIIS 536 (559)
T ss_pred --HHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hccHHHHH-HHHHHHHHHh
Confidence 99999999999998877 9999999999999999999998888887777666532 23456666 9999999999
Q ss_pred cCCHHHHHHHHHHhhhHHHHH
Q 003155 477 ELPQVDAKKALEMLCLPVVTP 497 (843)
Q Consensus 477 ~~p~~~~~~~l~~l~~p~~~~ 497 (843)
.+|.++....++.++.|.+..
T Consensus 537 ~lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 537 NLPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred cCCHhhhhHHHHHHhhHHHhc
Confidence 999999999999999998654
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-46 Score=396.72 Aligned_cols=772 Identities=16% Similarity=0.180 Sum_probs=557.5
Q ss_pred HHHhhhccccccCccc-cCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHhcCCCCCCcccccc
Q 003155 12 LELLTVLPEEVFNYKI-AARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASH 87 (843)
Q Consensus 12 L~~L~~lpEE~~~~~~-~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~~~~~~~L~cl~sWi~~~~~i~~~~l~~~ 87 (843)
|.+|+.|.||++++.- .++..|...++.+|...+++++.++.++++. +.+.+++|..+..++.| ||.+++..+
T Consensus 156 mivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeT 232 (1053)
T COG5101 156 MIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFET 232 (1053)
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHH
Confidence 7899999999998753 4677787889999999999999999999974 45777766655555542 666788888
Q ss_pred hhHHHHH-hhcCCCcchHHHHHHHHHHHhhhccCCCC-CccCcHhH-HHHHHH-HHHh-------hHHHHhhccCC-HHH
Q 003155 88 PLVLTAL-SSLHSEILSEASVNVISELIHYSAAGSSG-GATVNMPL-IQVIVP-QIMS-------LKAHLTDSSKD-EED 155 (843)
Q Consensus 88 ~ll~~~~-~~L~~~~~~~~A~~~l~eii~~~~~~~~~-~~~~~~~l-i~~l~~-~~~~-------l~~~l~~~~~d-~~~ 155 (843)
.+++++. +++..|+.|.++++|+.|+...++..-.+ ..++...+ ++.+.. .+.+ +.+.+...+.+ .++
T Consensus 233 nIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~F 312 (1053)
T COG5101 233 NIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIF 312 (1053)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHH
Confidence 9999987 55667899999999999999887642111 11122111 111111 1111 22223323333 367
Q ss_pred HHHHHHHHHHHhhHHHHHHHcCC--chHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccccc---ccccCc-----
Q 003155 156 VKAIARLFADMGDSYVELIATGS--DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDS---YISFGN----- 225 (843)
Q Consensus 156 ~~~l~~l~~~~~e~~~~~l~~~~--~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~---~~s~~~----- 225 (843)
+.+++.+++++-+.|...+.... +....-+.++++++...+.++.+.++++|..+...++.+-+ ...+++
T Consensus 313 vq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls 392 (1053)
T COG5101 313 VQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLS 392 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhcc
Confidence 89999999999999998887532 12455678999999999999999999999999877764210 000111
Q ss_pred --------ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhh
Q 003155 226 --------EASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA 297 (843)
Q Consensus 226 --------~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~ 297 (843)
.|.-+..++=+...|..++++|.-+++++|..|+|.--..+|+.|-.|+|-.+ |+|+. +|+-++
T Consensus 393 ~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvke-------tDtI~-lYksmR 464 (1053)
T COG5101 393 VGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKE-------TDTIE-LYKSMR 464 (1053)
T ss_pred ccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhcc-------ccHhH-HHHHHh
Confidence 11111112224567899999999999999999998655556777788888766 44555 666788
Q ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccCCC------
Q 003155 298 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP------ 370 (843)
Q Consensus 298 d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~lp------ 370 (843)
+++.+..++.- +++-.++...+...+.. ..|+|+.+...+||+|+|++.+++. +..++..++..|..++
T Consensus 465 evLvyLthL~v-~Dte~~mi~Klarq~dg---~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgK 540 (1053)
T COG5101 465 EVLVYLTHLIV-DDTEKYMIGKLARQLDG---KEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGK 540 (1053)
T ss_pred hHHHHHhhhhh-hhHHHHHHHHHHHHhcC---CccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999888765 55777777777766642 3799999999999999999999887 4567777777764432
Q ss_pred -CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc--------CCH
Q 003155 371 -QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYL 440 (843)
Q Consensus 371 -~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~--------~~~ 440 (843)
+...|++..|+++|+|.+|+..|+. +|++++..++..||+. ++|+.+||.+|.+++++|+.+++ |++
T Consensus 541 dnKAVvASnIMyvvGQYpRFLkahw~---FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI 617 (1053)
T COG5101 541 DNKAVVASNIMYVVGQYPRFLKAHWS---FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFI 617 (1053)
T ss_pred CcchhhecceeeeeccchHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHH
Confidence 2478999999999999999999997 9999999999999864 56999999999999999998886 677
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhh--
Q 003155 441 DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL-- 517 (843)
Q Consensus 441 ~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~-~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~-- 517 (843)
..|+.-+..... ++.+.....+|||+|.+|+..|. .+....+..++.-....|.++..++.++.........
T Consensus 618 ~~Iirnl~ktT~-----dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvk 692 (1053)
T COG5101 618 VYIIRNLPKTTG-----DLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVK 692 (1053)
T ss_pred HHHHHhhhhhcc-----cCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHH
Confidence 777766655542 57788888999999999999998 4566777788888888888887766543211110000
Q ss_pred HHHHHHHHHhhhcc--CC---cchHHHHHHHHHHHH---HHHHHhhc-------CCHHHHHHHHHHHHHH----HHh---
Q 003155 518 TVHIDRFAYIFRYV--NH---PEAVADAIQRLWPIF---KAIFDIRA-------WDMRTMESLCRACKYA----VRT--- 575 (843)
Q Consensus 518 ~~~l~~l~~~~~~~--~~---~~~~~~~~~~~~~~l---~~il~~~~-------~~~~i~e~~~~~l~~~----i~~--- 575 (843)
+......+.+..+- +. |+.+-.+...+.+-. ..+..... ..+.+ +-.+.+|+- +.+
T Consensus 693 i~an~~ktnVa~ctslg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~v--rglrtiKkEIlkLv~tyIs 770 (1053)
T COG5101 693 IDANKMKTNVAKCTSLGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAV--RGLRTIKKEILKLVATYIS 770 (1053)
T ss_pred HHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc--cchHHHHHHHHHHHHHHHh
Confidence 01112222222221 11 333322222222111 11111100 00000 112222221 111
Q ss_pred ----hhhhhhhhHHHHHHHHHHHHhh----cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCc
Q 003155 576 ----SKRFMGITIGAILEEIQGLYQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTS 647 (843)
Q Consensus 576 ----~~~~~~p~l~~l~~~l~~~~~~----~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~ 647 (843)
+.-.-..+++++++.++-+|.+ .+.+..|.+.++++...++- +.....-.+.+.+.+++.++. .++++
T Consensus 771 ka~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~--i~~~~~l~l~svf~ctl~mi~--kdf~E 846 (1053)
T COG5101 771 KARDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESV--IYLQRELFLISVFICTLIMIV--KDFDE 846 (1053)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhhHHHHH--hhhhh
Confidence 1112245678888888888876 35689999999999998864 555555667777888888886 67899
Q ss_pred CCchHHHHHHHHHHHHhhCCCcccC--cCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHH
Q 003155 648 RPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVI 725 (843)
Q Consensus 648 ~pD~~~~~f~l~~~~~~~~p~~~~~--s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~ 725 (843)
+||++.+||.|+..+..++...|++ .|.+..+.+..+|++++..|+....+++.+..++..+.... +.| +.+++
T Consensus 847 ypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg-~~~---~n~F~ 922 (1053)
T COG5101 847 YPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMG-VPF---INQFY 922 (1053)
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhC-Cch---HHHHH
Confidence 9999999999999999988777754 56799999999999999999999999999999997543222 333 77888
Q ss_pred hhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhH----------------HHHHHHHHHH-hhCCCCCCCHHHH
Q 003155 726 IPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGV----------------RSLEWAKESV-SLIPLTALAEVER 788 (843)
Q Consensus 726 ~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~----------------~~~~wl~~~l-~~~P~~~~t~~~~ 788 (843)
.++.-.++..++..+++.-++|.++..+-+|..+.+...+ .+.+|+.+.+ .+||+ +|+|+.
T Consensus 923 ~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp~--it~e~v 1000 (1053)
T COG5101 923 AQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFPN--ITQESV 1000 (1053)
T ss_pred HHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcCc--ccHHHH
Confidence 8888899999999999999999999999999888764422 4678888877 58997 999999
Q ss_pred HHHHHHHHHHhcCCCchhhhHHHHHHHHHHhh
Q 003155 789 SRFLQALSEAASGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 789 ~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r~ 820 (843)
..|...++.. ++|..-||+.++||......
T Consensus 1001 ~~f~~~l~~~--~~d~~ifk~~~~df~vkv~e 1030 (1053)
T COG5101 1001 KIFSVGLFEL--CGDDEIFKEHVEDFRVKVYE 1030 (1053)
T ss_pred HHHHHHHHHH--hCcHHHHHHHHHHHhhheee
Confidence 9999999987 67889999999999987654
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-37 Score=332.89 Aligned_cols=664 Identities=17% Similarity=0.194 Sum_probs=439.6
Q ss_pred HHhHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhcCC-CCCCccc--ccchhHHHHHhhcC--CCcchHHHHHHHHHHH
Q 003155 42 TSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKH-RIPGSVL--ASHPLVLTALSSLH--SEILSEASVNVISELI 114 (843)
Q Consensus 42 ~~~~~~Vl~~l~~~l~~~--~~~~~~L~cl~sWi~~~~-~i~~~~l--~~~~ll~~~~~~L~--~~~~~~~A~~~l~eii 114 (843)
.+.||+++.-|...+.++ +.++-++.+++.-++=+. ..+.+.. .-+.+++.++++.. +|.+|..|+.|+..++
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 457899999888888875 367777777776554211 0111111 12457788888877 5689999999998877
Q ss_pred hhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccC
Q 003155 115 HYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASH 194 (843)
Q Consensus 115 ~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~ 194 (843)
-.... .....+...+..+.. ++ .++|+++.+++|+.++-+.|..+..+.. |+..++++||+.+..
T Consensus 203 ~~~~q-------al~~~iD~Fle~lFa----la-nD~~~eVRk~vC~alv~Llevr~dkl~p---hl~~IveyML~~tqd 267 (885)
T KOG2023|consen 203 IIQTQ-------ALYVHIDKFLEILFA----LA-NDEDPEVRKNVCRALVFLLEVRPDKLVP---HLDNIVEYMLQRTQD 267 (885)
T ss_pred ecCcH-------HHHHHHHHHHHHHHH----Hc-cCCCHHHHHHHHHHHHHHHHhcHHhccc---chHHHHHHHHHHccC
Confidence 32210 001112222222211 12 3667788999999999999999988876 678899999999999
Q ss_pred CCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC----CCCCh----
Q 003155 195 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY----QDLSL---- 266 (843)
Q Consensus 195 ~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~----~~~~~---- 266 (843)
++++|+..+.|||..+++... ......|++.+|+++++.+|+|.++. .+.++
T Consensus 268 ~dE~VALEACEFwla~aeqpi--------------------~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 268 VDENVALEACEFWLALAEQPI--------------------CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred cchhHHHHHHHHHHHHhcCcC--------------------cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 999999999999999998542 12467999999999999999998731 10000
Q ss_pred hhhH-----HhHhhhccc----------------cccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHh
Q 003155 267 EDLK-----EFKHTRYDL----------------ACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVA 325 (843)
Q Consensus 267 e~~e-----~f~~~R~~~----------------~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~ 325 (843)
+|+| .|...|..+ +.++-+.||+|++....-|++.+ +.| +++++++++.+++.+.
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan---vf~-~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN---VFG-DELLPILLPLLKEHLS 403 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH---hhH-HHHHHHHHHHHHHHcC
Confidence 1111 122222211 12223449999987777677665 447 7899999999999873
Q ss_pred hCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCC-CC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH
Q 003155 326 CCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL-PQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASV 403 (843)
Q Consensus 326 ~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~l-p~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~v 403 (843)
+..|...||+++++|+||||+.....+++|.+++.+.++ .+ .|.||+.+||+++||++|+...+.. +|+.++
T Consensus 404 -----~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~-~~f~pv 477 (885)
T KOG2023|consen 404 -----SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD-EYFKPV 477 (885)
T ss_pred -----cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH-hhhHHH
Confidence 688999999999999999999999899999999987654 43 5899999999999999999876532 588888
Q ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH-
Q 003155 404 LSILT-SGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV- 481 (843)
Q Consensus 404 l~~l~-~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~- 481 (843)
+.=++ +.++..++|+.+||.||..+.++....|+||+..|++.+...++ ++..+.-+.+|+|||.++..+...
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~-----kYQ~KNLlILYDAIgtlAdsvg~~L 552 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG-----KYQKKNLLILYDAIGTLADSVGHAL 552 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-----HHhhcceehHHHHHHHHHHHHHHhc
Confidence 87554 55666667999999999999999999999999999999988875 566677788999999999887553
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCc-ch-HHHHHHHHHHHHHHHHHhhcCCH
Q 003155 482 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP-EA-VADAIQRLWPIFKAIFDIRAWDM 559 (843)
Q Consensus 482 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~-~~~~~~~~~~~l~~il~~~~~~~ 559 (843)
+...|++.++.|++++|+.+-+.. +++...+++++++...++.+ -| +.+++++
T Consensus 553 n~~~YiqiLmPPLi~KW~~lsd~D---------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~R---------------- 607 (885)
T KOG2023|consen 553 NKPAYIQILMPPLIEKWELLSDSD---------KDLFPLLECLSSIASALGVGFLPYAQPVYQR---------------- 607 (885)
T ss_pred CcHHHHHHhccHHHHHHHhcCccc---------chHHHHHHHHHHHHHHHhccccccCHHHHHH----------------
Confidence 467889999999999999854422 46777799999999887642 11 1123333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhh
Q 003155 560 RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 639 (843)
Q Consensus 560 ~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l 639 (843)
+++.+.+.+......-.+ | -...+.+.-..+.|++++-++...|+. +.+.+.+- .+..-.+..+
T Consensus 608 -----c~~il~~t~q~~~~~~~~--~-----~~~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~s--nl~~lll~C~ 671 (885)
T KOG2023|consen 608 -----CFRILQKTLQLLAKVQQD--P-----TVEAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQS--NLLDLLLQCL 671 (885)
T ss_pred -----HHHHHHHHHHHHHhccCC--c-----cccCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhc--cHHHHHHHHh
Confidence 333333332111100000 0 011122333456789999999988875 33322110 0111112212
Q ss_pred cccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHH
Q 003155 640 TSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLS 719 (843)
Q Consensus 640 ~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~ 719 (843)
.+.-||++++.|.|+..+.+.|+..+.+. +..++......+......+...|+--+..+.-.. +.+
T Consensus 672 -----~D~~peVRQS~FALLGDltk~c~~~v~p~--~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~-g~~------ 737 (885)
T KOG2023|consen 672 -----QDEVPEVRQSAFALLGDLTKACFEHVIPN--LADFLPILGANLNPENISVCNNAIWAIGEIALKM-GLK------ 737 (885)
T ss_pred -----ccCChHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHh-chh------
Confidence 35679999999999999999998877662 3444444334444444444444444333333211 011
Q ss_pred HHHHHHhhhhHHHHHHHHHHc-ccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH----hhCCCCCCCHHHHHHHHHH
Q 003155 720 VRDSVIIPRGASITRILIASL-TGALPSSRLETVTYALLALTRAYGVRSLEWAKESV----SLIPLTALAEVERSRFLQA 794 (843)
Q Consensus 720 ~~~~~~~~~g~~lv~~ll~~l-~~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l----~~~P~~~~t~~~~~~f~~~ 794 (843)
.+ .+-..++..++..+ .-..|++.+++.|..+..|...+|+.+.-.+...+ ..+-+- =..++|+.=...
T Consensus 738 -~~----~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i-~DneEK~sAFrG 811 (885)
T KOG2023|consen 738 -MK----QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNI-DDNEEKESAFRG 811 (885)
T ss_pred -hh----hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhccc-ccchhHHHHHHH
Confidence 11 12223444455444 34568889999999999999999986655444433 122211 134555553333
Q ss_pred HHHHhcCCCchhhhHHHHHHHHHHhh
Q 003155 795 LSEAASGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 795 l~~~~~~~~~~~~~~~~~~F~~~~r~ 820 (843)
+..-. ..|+ ...+.+|...|.-
T Consensus 812 ~c~mi-~vNp---~~vv~~~~f~c~a 833 (885)
T KOG2023|consen 812 LCNMI-NVNP---SGVVSSFIFICDA 833 (885)
T ss_pred HHHhe-eeCc---hhhhhhhHHHHHH
Confidence 33322 2344 3455666665544
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-26 Score=263.11 Aligned_cols=483 Identities=17% Similarity=0.194 Sum_probs=335.1
Q ss_pred HHHHhHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhcCCCCCCcccc--cchhHHHHHhhcCCC--cchHHHHHHHHHH
Q 003155 40 ELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLA--SHPLVLTALSSLHSE--ILSEASVNVISEL 113 (843)
Q Consensus 40 ~l~~~~~~Vl~~l~~~l~~~--~~~~~~L~cl~sWi~~~~~i~~~~l~--~~~ll~~~~~~L~~~--~~~~~A~~~l~ei 113 (843)
.+...||+++++|.++.+|+ .+++.++..+.+...+ ++ +... -..++.++-+++.++ .+|..|++++..+
T Consensus 111 ~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~---~~-~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~ 186 (1075)
T KOG2171|consen 111 DLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET---FG-NTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAF 186 (1075)
T ss_pred ccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh---hc-cccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 34447999999999999985 5999999999998764 33 2221 124666666888865 5789999999998
Q ss_pred HhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhcc
Q 003155 114 IHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVAS 193 (843)
Q Consensus 114 i~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~ 193 (843)
+.....+ + ...+.+..++|.+++..+...+ .+|++.+......+.++++..++++.. ++.+++++.++++.
T Consensus 187 ~~~~~~~-~----~~~~~~~~llP~~l~vl~~~i~-~~d~~~a~~~l~~l~El~e~~pk~l~~---~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 187 AEYLENN-K----SEVDKFRDLLPSLLNVLQEVIQ-DGDDDAAKSALEALIELLESEPKLLRP---HLSQIIQFSLEIAK 257 (1075)
T ss_pred HHHhccc-h----HHHHHHHHHhHHHHHHhHhhhh-ccchHHHHHHHHHHHHHHhhchHHHHH---HHHHHHHHHHHHhh
Confidence 8665421 1 2356788889998876555433 445567778899999999999998875 67899999999999
Q ss_pred CC--CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChh---h
Q 003155 194 HP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE---D 268 (843)
Q Consensus 194 ~~--~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e---~ 268 (843)
+. ++.++..+++|...+.+... .......++..+|+.+++..|.--+|.++|..+ |
T Consensus 258 n~~l~~~~R~~ALe~ivs~~e~Ap-------------------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 258 NKELENSIRHLALEFLVSLSEYAP-------------------AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred cccccHHHHHHHHHHHHHHHHhhH-------------------HHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 87 67899999999999988642 122344557778888888877543333566432 2
Q ss_pred hHHhH-hhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHh
Q 003155 269 LKEFK-HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAI 347 (843)
Q Consensus 269 ~e~f~-~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~i 347 (843)
+|++. .+|. ...++..+..-+|+..+++.+++.+...+. +.+|..+.|+|.+++++
T Consensus 319 ed~~~~~~~~------------------A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S~~w~~R~AaL~Als~i 375 (1075)
T KOG2171|consen 319 EDDEETPYRA------------------AEQALDRLALHLGGKQVLPPLFEALEAMLQ-----STEWKERHAALLALSVI 375 (1075)
T ss_pred cccccCcHHH------------------HHHHHHHHHhcCChhhehHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHH
Confidence 22211 1221 334566677788989999999999988873 68999999999999999
Q ss_pred hccCCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhHHHHhhCCCCc--hhHHHHHHHHHhccCCCHHHHHHHHH
Q 003155 348 STYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDP--SILASVLSILTSGMSTSEDTAAAAAL 423 (843)
Q Consensus 348 ae~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~--~~l~~vl~~l~~~l~~~~~v~~~A~~ 423 (843)
+||+.......++++++++.+ +. +||+||+++|.+||++++-|..+-+.. +.+++.+-.....-.+++ |+.+||.
T Consensus 376 ~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r-V~ahAa~ 454 (1075)
T KOG2171|consen 376 AEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR-VQAHAAA 454 (1075)
T ss_pred HcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH-HHHHHHH
Confidence 999988877889999998654 43 599999999999999999875321100 144444444444444455 9999999
Q ss_pred HHHHHHHHhhhh-hcCCHHHHHH-HHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHH
Q 003155 424 AFRHICDDCRKK-LCGYLDGLYN-VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 501 (843)
Q Consensus 424 a~~~lc~~c~~~-l~~~~~~li~-~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~ 501 (843)
|+.++.++|.+. +.||++.|++ .+.-+.+. -+...+..++.+||+|+.+. .+...+|...++. -|.++
T Consensus 455 al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-----~~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp----~L~~~ 524 (1075)
T KOG2171|consen 455 ALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-----SKPYVQEQAVTAIASVADAA-QEKFIPYFDRLMP----LLKNF 524 (1075)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHH----HHHHH
Confidence 999999999875 6699999999 45444442 24678999999999999875 2345566665544 45555
Q ss_pred HhcCCccccccCchh-hHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHhhhhh
Q 003155 502 INQGPEILQKKHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTSKRF 579 (843)
Q Consensus 502 ~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~-~~~~i~e~~~~~l~~~i~~~~~~ 579 (843)
+.+..+. +.+. ....+++++.+.+.++. +++.+..++++.++......-. .|....+-....+.++-+.+|++
T Consensus 525 L~n~~~~----d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~ 599 (1075)
T KOG2171|consen 525 LQNADDK----DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD 599 (1075)
T ss_pred HhCCCch----hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh
Confidence 5544321 1122 23457888888888764 5566666666666655431111 12223444444455555556666
Q ss_pred hhhhHHHHHHHHHH
Q 003155 580 MGITIGAILEEIQG 593 (843)
Q Consensus 580 ~~p~l~~l~~~l~~ 593 (843)
|.||+|.++..+..
T Consensus 600 F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 600 FAPFLPVVMPPLLK 613 (1075)
T ss_pred hHhHHHHHhHHHHH
Confidence 66666655544443
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-25 Score=242.55 Aligned_cols=531 Identities=16% Similarity=0.183 Sum_probs=370.9
Q ss_pred HHhHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCCCCCCcccc--cchhHHHHHhhcCC----CcchHHHHHHHHH
Q 003155 42 TSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLA--SHPLVLTALSSLHS----EILSEASVNVISE 112 (843)
Q Consensus 42 ~~~~~~Vl~~l~~~l~~~---~~~~~~L~cl~sWi~~~~~i~~~~l~--~~~ll~~~~~~L~~----~~~~~~A~~~l~e 112 (843)
++.||.++..|.+-...+ .+++.+|++++.-+. .++++.+. .+..+..+.++++. ..+|.+|.+||.+
T Consensus 124 ~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice---~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~n 200 (859)
T KOG1241|consen 124 QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE---DIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYN 200 (859)
T ss_pred hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc---cCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHH
Confidence 678888888776665432 488999999998877 47777543 36677888888773 3779999999999
Q ss_pred HHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhc
Q 003155 113 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA 192 (843)
Q Consensus 113 ii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~ 192 (843)
.+.....+..++.++ +.|.+++... ....|.+...+....++.+..-|+.++.... ...++.+.+.-.
T Consensus 201 sLef~~~nF~~E~er--n~iMqvvcEa--------tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM--~~alfaitl~am 268 (859)
T KOG1241|consen 201 SLEFTKANFNNEMER--NYIMQVVCEA--------TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM--EQALFAITLAAM 268 (859)
T ss_pred HHHHHHHhhccHhhh--ceeeeeeeec--------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 887765332222222 2333332211 1245666766777778889999998887621 245888888888
Q ss_pred cCCCcchhhhhHHHHHHHHHHhccc-ccccccCcccchHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhH
Q 003155 193 SHPEYDIASMTFNFWHSLQVILTKR-DSYISFGNEASAEAER-SRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLK 270 (843)
Q Consensus 193 ~~~~~~vs~~~~~FW~~l~~~~~~~-~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e 270 (843)
..++++|+.+++|||.+.+++-.+. ..|. ... +..+ +......+..+..+++++++.+...+| ++|+|
T Consensus 269 ks~~deValQaiEFWsticeEEiD~~~e~~---e~~--d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde-----~~d~D 338 (859)
T KOG1241|consen 269 KSDNDEVALQAIEFWSTICEEEIDLAIEYG---EAV--DQGLPPSSKYFARQALQDVVPVLLELLTKQDE-----DDDDD 338 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh--hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC-----Ccccc
Confidence 8899999999999999998874431 0000 000 0000 112334455677788888888877543 11223
Q ss_pred HhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhcc
Q 003155 271 EFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTY 350 (843)
Q Consensus 271 ~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~ 350 (843)
+|.-.. . .+-+|+-.+.++| |.+++++.+.+++.+. +++|+.+||+.+++|+|-++
T Consensus 339 dWnp~k-A-----------------Ag~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~-----~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 339 DWNPAK-A-----------------AGVCLMLFAQCVG-DDIVPHVLPFIEENIQ-----NPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred cCcHHH-H-----------------HHHHHHHHHHHhc-ccchhhhHHHHHHhcC-----CcchhhhhHHHHHHHhhhcC
Confidence 344332 2 6678888888889 7899999999998773 78999999999999999999
Q ss_pred CCCcc-ccchHHHhhhccCC--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 003155 351 VSVVE-AEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRH 427 (843)
Q Consensus 351 ~~~~~-~~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~ 427 (843)
..... .+.+++.++.+.++ .+...++.|+.|++||.++++..--.+..++.+++..+..||++..++...+|+||..
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFIS 474 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHH
Confidence 76653 34455555554332 2245788999999999999987533233689999999999997654599999999999
Q ss_pred HHHHhhhhh---------cCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHH
Q 003155 428 ICDDCRKKL---------CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL 498 (843)
Q Consensus 428 lc~~c~~~l---------~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l 498 (843)
|++.|.+.. .|+.+.|++.+.....+.| .-...-|...|+|++-+|...| +..++.+..+..-++.+|
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st-~~vy~~v~~~~l~il~kl 551 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNST-DDVYPMVQKLTLVILEKL 551 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHH
Confidence 999887533 3688889888888775431 1345678889999999999874 567788889999999999
Q ss_pred HHHHhcCCcc-ccccCchhhHHH-HHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh
Q 003155 499 QEIINQGPEI-LQKKHPRDLTVH-IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS 576 (843)
Q Consensus 499 ~~~~~~~~~~-~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~ 576 (843)
.++++...-+ .++...+++... ..+|+.+.|.++. ...++.+++|.++.++++. ..+.-+-|.+.-.+...+..+
T Consensus 552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~L 628 (859)
T KOG1241|consen 552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESL 628 (859)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHH
Confidence 9999832211 111112233322 4677777776653 5666888999999999988 555667789999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcCC----chHhHHHHHHHHHhCCCcchhHHHHHHHH
Q 003155 577 KRFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGSDPSCASYLHNLIE 629 (843)
Q Consensus 577 ~~~~~p~l~~l~~~l~~~~~~~~~----~~~L~l~~~li~~fg~~~~~~~~l~~~l~ 629 (843)
|+.|..|+|.+.+++..+.++... .....+.+-+....+.+ +.+....+..
T Consensus 629 g~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~--i~py~d~~mt 683 (859)
T KOG1241|consen 629 GKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD--ILPYCDELMT 683 (859)
T ss_pred hHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHH
Confidence 999999999999999988865332 23344444444444444 4444443333
No 8
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.9e-23 Score=239.87 Aligned_cols=770 Identities=14% Similarity=0.170 Sum_probs=494.6
Q ss_pred CCCchHHHHHHhhhccccccCcccc-CChhHHHHHHHHHHHhHHHHHHHHHHhhhch--hhHHHH---HHHHHHHHhcCC
Q 003155 4 HPEFVPGFLELLTVLPEEVFNYKIA-ARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQV---LEAFASWLRLKH 77 (843)
Q Consensus 4 ~~~~~~~~L~~L~~lpEE~~~~~~~-~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~---L~cl~sWi~~~~ 77 (843)
++...+..+.+|+.|.||++.+... ++..++.-++..+...+..+..++..+..+. ++..++ |.+|.+|+++
T Consensus 146 s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~-- 223 (1041)
T KOG2020|consen 146 SETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPL-- 223 (1041)
T ss_pred CcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccH--
Confidence 4566678899999999999987543 3334444456677888889999888876552 344454 5555556554
Q ss_pred CCCCcccccchhHHHH-HhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHH------HHHHHhhHHHHhhc-
Q 003155 78 RIPGSVLASHPLVLTA-LSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVI------VPQIMSLKAHLTDS- 149 (843)
Q Consensus 78 ~i~~~~l~~~~ll~~~-~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l------~~~~~~l~~~l~~~- 149 (843)
.++..+..+..+ ...++.++.+..|++|+.++++.....+.. ...++++.. ++...++.+.+..+
T Consensus 224 ----~~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~---~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~ 296 (1041)
T KOG2020|consen 224 ----GYIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYER---KTVPMFNLTIYQLRSIPQDLDIPEVYSSLS 296 (1041)
T ss_pred ----HHHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhH---HhHHHHHHHHHHHHHhhhhhchhhhhhccc
Confidence 555544445554 466678899999999999999876421110 112222222 22222333333222
Q ss_pred cCCH-HHHHHHHHHHHHHhhHHHHHHHcCCc---hHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccc-ccccccC
Q 003155 150 SKDE-EDVKAIARLFADMGDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFG 224 (843)
Q Consensus 150 ~~d~-~~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~-~~~~s~~ 224 (843)
..|. .+.++++.+++.+++.|..++..... ........++..+..++.++...++++|..+...++.. +++...+
T Consensus 297 ~~dq~~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~~ll~~s 376 (1041)
T KOG2020|consen 297 DEDQDSFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYNKPPLLQLS 376 (1041)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccccccccc
Confidence 2334 67899999999999999999987221 12233344444444555555555999999998886653 2221110
Q ss_pred c-ccch-HHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHH
Q 003155 225 N-EASA-EAER-SRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLI 301 (843)
Q Consensus 225 ~-~~~~-~~~~-~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~ 301 (843)
. -++. +-.| +-+.+.|..++.++.-..+.+|..|++.--.+.|..+.+++.+.+ .+-.++|..+.+++.
T Consensus 377 ~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~--------~~~~~ly~~~~e~l~ 448 (1041)
T KOG2020|consen 377 TTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKD--------HDFITLYPVLRETLV 448 (1041)
T ss_pred cccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccC--------cchhhhhHHHHHHHH
Confidence 0 0000 0000 122578899999999999999999997555556777888888765 234567777888888
Q ss_pred HHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccCC------CC-cH
Q 003155 302 DAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKL------PQ-QP 373 (843)
Q Consensus 302 ~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~l------p~-~~ 373 (843)
+.+..-+ ...-..+...+...+.+ ..++|+.+.--+|+++++++.+.+. +..++..++.-+.++ ++ ..
T Consensus 449 ~~~~L~~-~~t~~~~~~kl~~~l~~---~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~a 524 (1041)
T KOG2020|consen 449 YLLHLDV-VDTEKIMTEKLAIQLDG---DEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKA 524 (1041)
T ss_pred HHHHhhh-hhhhhhhhHhHHHHhhH---HHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 8776655 44555566665555432 3688999999999999998876554 233333333322221 22 35
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc--------CCHHHHH
Q 003155 374 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLY 444 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~--------~~~~~li 444 (843)
.+....++.+|+|..|+..|+. +|+++...+++.+|.. ++++.+||.+|.++...|+.+++ |+...++
T Consensus 525 vi~~Ni~~vv~q~p~Fl~~h~~---~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~ 601 (1041)
T KOG2020|consen 525 VIASNIMYVVGQYPRFLKAHWK---FLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELL 601 (1041)
T ss_pred HHHHHHHHHhcccchHHHHHHH---HHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHh
Confidence 7888899999999999999975 9999999999999864 34899999999999999998643 5666666
Q ss_pred HHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhHHHHHHHHHHhcCCcccccc-Cc---hhhHH
Q 003155 445 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HP---RDLTV 519 (843)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~-~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~-~~---~~~~~ 519 (843)
.-+..++. .+...++...++++|.++.+ .+++....+....+.-.-..+.+++.++..+.+.. .. +.+..
T Consensus 602 ~~l~~i~~-----~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~ 676 (1041)
T KOG2020|consen 602 LNLTAITE-----DLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLN 676 (1041)
T ss_pred hcccchhc-----CchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHH
Confidence 65555543 45678899999999966654 56677777877777777777777776655432110 11 11111
Q ss_pred HHHHHHHhhhccCCc---c------hHHHHHHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHH----Hhh-h-----
Q 003155 520 HIDRFAYIFRYVNHP---E------AVADAIQRLWPIFKAIFDI---RAWDMRTMESLCRACKYAV----RTS-K----- 577 (843)
Q Consensus 520 ~l~~l~~~~~~~~~~---~------~~~~~~~~~~~~l~~il~~---~~~~~~i~e~~~~~l~~~i----~~~-~----- 577 (843)
.+...+...+.++.+ . .....+...-+.+...... +..-.+.+. ..+.+++-+ .++ +
T Consensus 677 i~~~~~~~~~sl~~~f~~~~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~-~~~svk~ei~~~~~~~~~~~~~~ 755 (1041)
T KOG2020|consen 677 ILKTNSRALTSLGSTFVPQLGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVK-TLRSVKREILKLLETFISKSEQR 755 (1041)
T ss_pred HHHhHHHHHHhcCcccccccccccHHHHHHHHHhcccccHHHhcccccccccHHHH-HHHHHHHHHHHHHHhccCcccch
Confidence 233334444443321 0 0111111111111111110 000011111 112222211 111 1
Q ss_pred -hhhhhhHHHHHHHHHHHHhh----cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchH
Q 003155 578 -RFMGITIGAILEEIQGLYQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVA 652 (843)
Q Consensus 578 -~~~~p~l~~l~~~l~~~~~~----~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~ 652 (843)
.....++|+++...+-.|.. .+.+..+.+-..++.+.|+- +...+..++.+++.+++.+++ .++.+.||++
T Consensus 756 ~~~~~~~~~~~~~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~--i~~~~~~i~~~v~~c~l~m~~--~d~qe~~e~~ 831 (1041)
T KOG2020|consen 756 DLYLLMLVPPLLDAVLFDYLDNVPDYRENEVLSLNATIVPKLGEF--IPAELPLINIAVLECTLEMIN--KDFQEYPEHR 831 (1041)
T ss_pred hHHHHhhhhHHHHHHHHHHHccCcchhcchHHHhhhhhhhhhhhH--hhhhccHHHHHHHhhhhhccc--cccccchHHH
Confidence 12234456666666655553 44567777777788788875 555666677788888887776 6789999999
Q ss_pred HHHHHHHHHHHhhCCCccc--CcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhH
Q 003155 653 DDCFLLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGA 730 (843)
Q Consensus 653 ~~~f~l~~~~~~~~p~~~~--~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~ 730 (843)
..||.++..+...++.++. +++.+...++.++++..+..+.+.++++..+..+........ ...+.++++++.
T Consensus 832 ~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~-----~~~~~~~~~~~~ 906 (1041)
T KOG2020|consen 832 LNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEME-----KFANAFYQTYFL 906 (1041)
T ss_pred HHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh-----HHHHHHHHHHHH
Confidence 9999999999888877764 456677888899999999999999999999999987432111 236778888888
Q ss_pred HHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHH-HH-----------------HHHHHHH-hhCCCCCCCHHHHHHH
Q 003155 731 SITRILIASLTGALPSSRLETVTYALLALTRAYGVR-SL-----------------EWAKESV-SLIPLTALAEVERSRF 791 (843)
Q Consensus 731 ~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~~-~~-----------------~wl~~~l-~~~P~~~~t~~~~~~f 791 (843)
.+....+..+.+..+.+.+...+-.+..+.+...+. +. ++....+ ..||+ .++++...|
T Consensus 907 ~~l~~~~~~~~~~~~~~~f~~~~L~~~~l~~l~~~~~~~~~l~~~~~v~~n~~~L~e~i~~~l~~~f~~--~~~~~v~~~ 984 (1041)
T KOG2020|consen 907 SLLQKIIAVLTDTDHKAGFTKQVLKLQFLFRLVESAKLHTPLLQGNVVHGNQAFLREYIYGLLRPAFPN--LTDEQVRAF 984 (1041)
T ss_pred HHHHHHHHHHhccchhhcchHHHHHHHHHHHHHHhhhHHHhhccccccchHHHHHHHHHHHhhhhhchh--hchHHHHHH
Confidence 888888888888888888887777776665544321 22 2222222 35665 678999999
Q ss_pred HHHHHHHhcCCCchhhhHHHHHHHH
Q 003155 792 LQALSEAASGVDVNAAMAPVEELSD 816 (843)
Q Consensus 792 ~~~l~~~~~~~~~~~~~~~~~~F~~ 816 (843)
...++.. .++...+++.++|+..
T Consensus 985 ~~~~~~~--~~~~~~~k~~~~d~~~ 1007 (1041)
T KOG2020|consen 985 DIGLFDE--CKDVSPFKDHVRDVQI 1007 (1041)
T ss_pred hHHHHHH--hcccchhhcchhhHHH
Confidence 9999987 4677778888998444
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.89 E-value=4.3e-18 Score=180.60 Aligned_cols=514 Identities=13% Similarity=0.116 Sum_probs=323.1
Q ss_pred HHhHHHHHHHHHHhhhc--h-hhHHHHHHHHHHHHhcCCCCCCcccc---cchhHHHHHhhcCCC---cchHHHHHHHHH
Q 003155 42 TSQMEVALSTLTACLHI--N-ELKEQVLEAFASWLRLKHRIPGSVLA---SHPLVLTALSSLHSE---ILSEASVNVISE 112 (843)
Q Consensus 42 ~~~~~~Vl~~l~~~l~~--~-~~~~~~L~cl~sWi~~~~~i~~~~l~---~~~ll~~~~~~L~~~---~~~~~A~~~l~e 112 (843)
+..||..++.+....-. | ..+..++..++.-+.- ..++.+. +.-++..+-..+.++ .+|.+|++|+.+
T Consensus 128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces---~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~d 204 (858)
T COG5215 128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES---EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMD 204 (858)
T ss_pred cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc---cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence 44555555555443322 1 3555566666665552 3333332 222333344555544 668999999988
Q ss_pred HHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchH-HHHHHHHHhh
Q 003155 113 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDES-MLIVHALLEV 191 (843)
Q Consensus 113 ii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~ 191 (843)
-+..-..+.... ...+.+.+++... ....|++......-.++-+..-|++++.. .+ ..+..+..+.
T Consensus 205 sl~fv~~nf~~E--~erNy~mqvvcea--------tq~~d~e~q~aafgCl~kim~LyY~fm~~---ymE~aL~alt~~~ 271 (858)
T COG5215 205 SLMFVQGNFCYE--EERNYFMQVVCEA--------TQGNDEELQHAAFGCLNKIMMLYYKFMQS---YMENALAALTGRF 271 (858)
T ss_pred HHHHHHHhhcch--hhhchhheeeehh--------ccCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 443322111100 1122333332221 12445566555556677777778877753 23 3577788888
Q ss_pred ccCCCcchhhhhHHHHHHHHHHhccc---ccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhh
Q 003155 192 ASHPEYDIASMTFNFWHSLQVILTKR---DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLED 268 (843)
Q Consensus 192 ~~~~~~~vs~~~~~FW~~l~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~ 268 (843)
...++++|..+++|||.+.+++-.+. .+|.. ..|. . ...=.....++++..|+..+-++ .+|++
T Consensus 272 mks~nd~va~qavEfWsticeEeid~~~e~~~~p--e~p~-q-n~~fa~aav~dvlP~lL~LL~~q---~ed~~------ 338 (858)
T COG5215 272 MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP--EVPA-Q-NHGFARAAVADVLPELLSLLEKQ---GEDYY------ 338 (858)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc--cCch-h-hcchHHHHHHHHHHHHHHHHHhc---CCCcc------
Confidence 89999999999999999998874432 11210 0010 0 00001122334444444444332 22221
Q ss_pred hHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhh
Q 003155 269 LKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348 (843)
Q Consensus 269 ~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~ia 348 (843)
+|+|.-.- . .+-+|+--..+.| |.++..+...+.+.+. +.+|+.+||+..++|++-
T Consensus 339 ~DdWn~sm-a-----------------A~sCLqlfaq~~g-d~i~~pVl~FvEqni~-----~~~w~nreaavmAfGSvm 394 (858)
T COG5215 339 GDDWNPSM-A-----------------ASSCLQLFAQLKG-DKIMRPVLGFVEQNIR-----SESWANREAAVMAFGSVM 394 (858)
T ss_pred ccccchhh-h-----------------HHHHHHHHHHHhh-hHhHHHHHHHHHHhcc-----CchhhhHHHHHHHhhhhh
Confidence 12233221 1 4556666566667 7787777777777663 689999999999999999
Q ss_pred ccCCCcc-ccchHHHhhhccCC-CC-cHHHHHHHHHHHHhhHHHHhh--CCCCchhHHHHHHHHHhccCCCHHHHHHHHH
Q 003155 349 TYVSVVE-AEVMPQVMALLPKL-PQ-QPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGMSTSEDTAAAAAL 423 (843)
Q Consensus 349 e~~~~~~-~~~l~~l~~~l~~l-p~-~~~v~~t~~~~ig~y~~~l~~--~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~ 423 (843)
++-.... ..++|+.++.+.+. .+ -..+..|+.|++|+.+++++. +|. .+++......+-|+.+..++....|+
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHhhhhccchHHhhhHH
Confidence 9876553 56778888877654 22 358999999999999999986 455 58889999888888654448999999
Q ss_pred HHHHHHHHhhh-------hhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHH
Q 003155 424 AFRHICDDCRK-------KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVT 496 (843)
Q Consensus 424 a~~~lc~~c~~-------~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~ 496 (843)
++.++.+.-.+ .+.++.+.|++.+....... ......|...|+++|.+|..-| +...+.+..+.+.++.
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtli~~~~-d~V~~~~a~~~~~~~~ 548 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTLILICP-DAVSDILAGFYDYTSK 548 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Confidence 99999866443 45577778888776665431 2346788899999999998875 4456677788888888
Q ss_pred HHHHHHhcCCccc---cccCchhhHH-HHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003155 497 PLQEIINQGPEIL---QKKHPRDLTV-HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 572 (843)
Q Consensus 497 ~l~~~~~~~~~~~---~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~ 572 (843)
++.++++-..+.. ++....++.. .+++|.+++|... ..+.++-.++|.++.+++++- ...-+-+.+...+..+
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~--~~ie~v~D~lm~Lf~r~les~-~~t~~~~dV~~aIsal 625 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR--RDIEDVEDQLMELFIRILEST-KPTTAFGDVYTAISAL 625 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHHhcc-CCchhhhHHHHHHHHH
Confidence 8888876433211 1111122222 3577888887643 223336678899999999875 3344567888999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhhcCC---chHhHHHHHHHHHhCCC
Q 003155 573 VRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSD 617 (843)
Q Consensus 573 i~~~~~~~~p~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~fg~~ 617 (843)
..++++.+..+++.+++.+....+.... .+...+.+-+....|.+
T Consensus 626 ~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 626 STSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh
Confidence 8889999999999999888888754322 24455566666666665
No 10
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.78 E-value=2.1e-17 Score=176.44 Aligned_cols=229 Identities=19% Similarity=0.248 Sum_probs=195.0
Q ss_pred hhhhHHHHHHHHHHHHhh----cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHH
Q 003155 580 MGITIGAILEEIQGLYQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDC 655 (843)
Q Consensus 580 ~~p~l~~l~~~l~~~~~~----~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~ 655 (843)
...++|++++.++.+|++ .+.+.+|++.+.++.+.|+. ..+.+..+++.++..|+.+++ +++.++||++..|
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~Tl~MI~--~d~~~yPe~r~~f 140 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECTLPMIN--KDFEEYPEHRVNF 140 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHHHHHHS--STSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH--hhhhhChHHHHHH
Confidence 346789999999999986 47789999999999999985 667889999999999999998 6789999999999
Q ss_pred HHHHHHHHhhCCCccc--CcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHH
Q 003155 656 FLLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASIT 733 (843)
Q Consensus 656 f~l~~~~~~~~p~~~~--~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv 733 (843)
|.|+..+.++|+..++ +++.+..++++.+||++++++++...+++.+..+++.... ..+ +..+++++.|...++
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~---~~~~~F~~~y~~~il 216 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNP---EFANQFYQQYYLDIL 216 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCH---HHHHHHHHHHHHHHH
Confidence 9999999999998774 5667999999999999999999999999999999985432 122 347889999999999
Q ss_pred HHHHHHcccCCCCCCcccHHHHHHHHHHHh----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHH
Q 003155 734 RILIASLTGALPSSRLETVTYALLALTRAY----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALS 796 (843)
Q Consensus 734 ~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~----------------~~~~~~wl~~~l-~~~P~~~~t~~~~~~f~~~l~ 796 (843)
..++..+++..|++.++..+.+|..|.... .....+|+.+.+ +.||+ +++++.+.|++.++
T Consensus 217 ~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~--l~~~qi~~fv~~Lf 294 (319)
T PF08767_consen 217 QDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPN--LSPKQIENFVQGLF 294 (319)
T ss_dssp HHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TT--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 999999999999999999999999998641 234678888888 48997 99999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHhh
Q 003155 797 EAASGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 797 ~~~~~~~~~~~~~~~~~F~~~~r~ 820 (843)
+. .++..+||..+|||.+..|.
T Consensus 295 ~~--~~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 295 EL--NNDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHTS
T ss_pred Hh--cCCHHHHHHHHHHHhhhhhh
Confidence 87 46899999999999998875
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8.5e-10 Score=120.48 Aligned_cols=578 Identities=12% Similarity=0.129 Sum_probs=320.0
Q ss_pred chhhHHHHHHHHHHHHhcCCCCCCccc--ccchhHHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHH
Q 003155 58 INELKEQVLEAFASWLRLKHRIPGSVL--ASHPLVLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ 133 (843)
Q Consensus 58 ~~~~~~~~L~cl~sWi~~~~~i~~~~l--~~~~ll~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~ 133 (843)
++.++..++.|+...|-. ....+ .-..++..+|..-+ +|++|...|..++-++...++ +-.+.+.
T Consensus 187 spkiRs~A~~cvNq~i~~----~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-------kl~phl~ 255 (885)
T KOG2023|consen 187 SPKIRSHAVGCVNQFIII----QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-------KLVPHLD 255 (885)
T ss_pred ChhHHHHHHhhhhheeec----CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-------hcccchH
Confidence 357999999999999863 22211 23678888887665 459999999999999877653 2334444
Q ss_pred HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHH-HHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHH
Q 003155 134 VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV-ELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQV 212 (843)
Q Consensus 134 ~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~-~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~ 212 (843)
.++..++.. ..+.|++.+-.-|....++++.-. +.+.. ++..+++++|+.-+.+.+.++..+ +
T Consensus 256 ~IveyML~~-----tqd~dE~VALEACEFwla~aeqpi~~~~L~--p~l~kliPvLl~~M~Ysd~D~~LL---------~ 319 (885)
T KOG2023|consen 256 NIVEYMLQR-----TQDVDENVALEACEFWLALAEQPICKEVLQ--PYLDKLIPVLLSGMVYSDDDIILL---------K 319 (885)
T ss_pred HHHHHHHHH-----ccCcchhHHHHHHHHHHHHhcCcCcHHHHH--HHHHHHHHHHHccCccccccHHHh---------c
Confidence 444444321 235566677777887888877642 11111 256789999999888887776332 1
Q ss_pred HhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhh
Q 003155 213 ILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVM 292 (843)
Q Consensus 213 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~ 292 (843)
...+++ .. +.+.+-.+|-+.+=-..-...-+-.+|.++.++||.|.|.++. +++|+.++ +.|+
T Consensus 320 --~~eeD~-------~v----pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWN--LRkCSAAa--LDVL 382 (885)
T KOG2023|consen 320 --NNEEDE-------SV----PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWN--LRKCSAAA--LDVL 382 (885)
T ss_pred --Cccccc-------cC----CchhhhccchhhhchhccCcccccccccccccccccccccccc--HhhccHHH--HHHH
Confidence 000111 00 1122334555544222222222211121111223444555554 55666554 3333
Q ss_pred hchhhHHHHH-Hhh-------------------hcC---------hhHHHHHHHHHHHHHHhhCCCCCCCcchh-hHHHH
Q 003155 293 LIAVADVLID-AAS-------------------VLG---------GDATLKILYIKFVEGVACCGNKHNEWRPA-EAALF 342 (843)
Q Consensus 293 ~~~~~d~l~~-~~~-------------------vl~---------~~~~l~~l~~~l~~~l~~~~~~~~~W~~~-Ea~L~ 342 (843)
.++.+|=+.. +.. .+| .-..++.+.+.+.+.+. ..|.-+ --.+|
T Consensus 383 anvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~------DKkplVRsITCW 456 (885)
T KOG2023|consen 383 ANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD------DKKPLVRSITCW 456 (885)
T ss_pred HHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc------cCccceeeeeee
Confidence 3333332111 100 011 11123334444444442 222211 23466
Q ss_pred HHHHhhccCCCcc-ccchHHHhhhccC--CCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHH
Q 003155 343 CIRAISTYVSVVE-AEVMPQVMALLPK--LPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTA 418 (843)
Q Consensus 343 ~l~~iae~~~~~~-~~~l~~l~~~l~~--lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~ 418 (843)
-++..+..+..+. ++++..++.-+.+ +..+.+|+.++|..+.-+-+-- .++-..|+..++.-+..++..= +|=-
T Consensus 457 TLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 457 TLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA--GEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 6777766655443 3555555554432 3457899999998776554422 1221136666666555555320 1112
Q ss_pred HHHHHHHHHHHHHhhhhhcC------CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH---HHHHHHHH
Q 003155 419 AAAALAFRHICDDCRKKLCG------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV---DAKKALEM 489 (843)
Q Consensus 419 ~~A~~a~~~lc~~c~~~l~~------~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~---~~~~~l~~ 489 (843)
.---.|+..+++.|+++|.. .++++++.+..+-. ++++-.-++|++++|.+++..- -+.+..++
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd-------~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~R 607 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD-------SDKDLFPLLECLSSIASALGVGFLPYAQPVYQR 607 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc-------ccchHHHHHHHHHHHHHHHhccccccCHHHHHH
Confidence 34567888899999887762 35677777766532 3456777999999999885210 01111222
Q ss_pred hhhHHHHHHHHHHhcCCccccccCchh-hHHHHHHHHHhhhccCC-cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 003155 490 LCLPVVTPLQEIINQGPEILQKKHPRD-LTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 567 (843)
Q Consensus 490 l~~p~~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~ 567 (843)
.+.-+-..++.......+..-....++ ++..++.++.+..+++. .++.+. -+.++.++...+.- .-++|++.+..
T Consensus 608 c~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva-~snl~~lll~C~~D--~~peVRQS~FA 684 (885)
T KOG2023|consen 608 CFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA-QSNLLDLLLQCLQD--EVPEVRQSAFA 684 (885)
T ss_pred HHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh-hccHHHHHHHHhcc--CChHHHHHHHH
Confidence 221111112222221111100011223 44568999999999875 233221 12344444443321 24679999999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCch---HhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccccc
Q 003155 568 ACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPC---FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEE 644 (843)
Q Consensus 568 ~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~---~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~ 644 (843)
.++.+.+.+.+++.|++..++..+.+.+.....+. ..|.++-+..++|.+ ..+.+..++..++. +++.
T Consensus 685 LLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~--~~~~v~~vl~~L~~----iin~--- 755 (885)
T KOG2023|consen 685 LLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK--MKQYVSPVLEDLIT----IINR--- 755 (885)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh--hhhHHHHHHHHHHH----Hhcc---
Confidence 99999999999999999988888887766554443 467788888888876 56666666666543 3332
Q ss_pred CCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhc-cCCChhHHHHHHHHHHHhhcc
Q 003155 645 FTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGI-TVQHREASNSILTFLSDIFDL 708 (843)
Q Consensus 645 ~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l-~~~e~~~~~s~~~fl~~li~~ 708 (843)
....-.+.+..---++|+...||..+.+ .++..+.=.+..+ .+.+.+.-.+|+.=+..+++.
T Consensus 756 ~~~~~tllENtAITIGrLg~~~Pe~vAp--~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 756 QNTPKTLLENTAITIGRLGYICPEEVAP--HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred cCchHHHHHhhhhhhhhhhccCHHhcch--hHHHHHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 1222334555545567778889987655 4666664333333 356777778899889999874
No 12
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.1e-07 Score=106.71 Aligned_cols=407 Identities=15% Similarity=0.152 Sum_probs=226.6
Q ss_pred CCCCCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhcCCCC
Q 003155 2 NSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRI 79 (843)
Q Consensus 2 ~~~~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~L~cl~sWi~~~~~i 79 (843)
|++|......+.+|..+|+=+++... .....+..++.+++..+ .++..+++++.+.+.+. ..
T Consensus 129 S~~~~~rE~al~il~s~~~~~~~~~~---------------~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~-~~ 192 (1075)
T KOG2171|consen 129 SPNPSLRESALLILSSLPETFGNTLQ---------------PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL-EN 192 (1075)
T ss_pred CCCcchhHHHHHHHHhhhhhhccccc---------------hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh-cc
Confidence 56788888889999999987775332 23456667777787653 38889999999999863 11
Q ss_pred CCcccc-cchhHHHHHhhcC------CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhh-ccC
Q 003155 80 PGSVLA-SHPLVLTALSSLH------SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD-SSK 151 (843)
Q Consensus 80 ~~~~l~-~~~ll~~~~~~L~------~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~-~~~ 151 (843)
..+... -..+++.++..+. |.+....+.+++.|++.... +++...+..+++..-.+.. .+-
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p-----------k~l~~~l~~ii~~~l~Ia~n~~l 261 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP-----------KLLRPHLSQIIQFSLEIAKNKEL 261 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch-----------HHHHHHHHHHHHHHHHHhhcccc
Confidence 122221 1456666655544 33446778888888886432 2333333344433333332 233
Q ss_pred CHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHH
Q 003155 152 DEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEA 231 (843)
Q Consensus 152 d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~ 231 (843)
|+........+++++.+.-+.....+++...+++..++.++.-.+.+ +=|+.= |+. +.+.+ +.+..-+
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D------~ew~~~-d~~-ded~~----~~~~~~A 329 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD------DEWSNE-DDL-DEDDE----ETPYRAA 329 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc------hhhccc-ccc-ccccc----cCcHHHH
Confidence 44444455566777877743333334444567777777776544332 334321 111 11110 0010000
Q ss_pred HHHHHH---------HHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHH
Q 003155 232 ERSRRL---------QVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLID 302 (843)
Q Consensus 232 ~~~~~~---------~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~ 302 (843)
.+.. +..-|.+...++.++. . .+| + +|+. .-=.+..
T Consensus 330 --~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S--~~w--------~-~R~A-----------------aL~Als~ 374 (1075)
T KOG2171|consen 330 --EQALDRLALHLGGKQVLPPLFEALEAMLQ-----S--TEW--------K-ERHA-----------------ALLALSV 374 (1075)
T ss_pred --HHHHHHHHhcCChhhehHHHHHHHHHHhc-----C--CCH--------H-HHHH-----------------HHHHHHH
Confidence 0000 0111111111222221 1 123 1 2222 1001111
Q ss_pred ----HhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccc-----hHHHhhhccCCCCcH
Q 003155 303 ----AASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEV-----MPQVMALLPKLPQQP 373 (843)
Q Consensus 303 ----~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~-----l~~l~~~l~~lp~~~ 373 (843)
|...+. ..++.+++.+...+ + +++-+-+=|||.|+|.++..+.++-... ++.++..+-+ +.++
T Consensus 375 i~EGc~~~m~--~~l~~Il~~Vl~~l----~-DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~ 446 (1075)
T KOG2171|consen 375 IAEGCSDVMI--GNLPKILPIVLNGL----N-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNV 446 (1075)
T ss_pred HHcccHHHHH--HHHHHHHHHHHhhc----C-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCch
Confidence 111111 02222333333332 1 5556666799999999999998774322 2233333322 4478
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhh
Q 003155 374 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 451 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~--~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~ 451 (843)
+|..-+.-.+-.+++.....- -..||+.+++..+..+.. +..++..|..|+..++..+...+.||.+.++..+.+.+
T Consensus 447 rV~ahAa~al~nf~E~~~~~~-l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSI-LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH
Confidence 888888888887777654320 013888888855544432 33599999999999999999999999999999999998
Q ss_pred cccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003155 452 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCL 492 (843)
Q Consensus 452 ~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~ 492 (843)
.+.++. -...-|.+.+|+++.+..++..++..+..+.+++
T Consensus 526 ~n~~~~-d~r~LrgktmEcisli~~AVGke~F~~~a~eliq 565 (1075)
T KOG2171|consen 526 QNADDK-DLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ 565 (1075)
T ss_pred hCCCch-hhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH
Confidence 764322 1245677789999998888866655555444443
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.3e-06 Score=100.67 Aligned_cols=641 Identities=13% Similarity=0.173 Sum_probs=334.2
Q ss_pred CCCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHH----------------H--HHHHHhhhchh-hHHH
Q 003155 4 HPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVA----------------L--STLTACLHINE-LKEQ 64 (843)
Q Consensus 4 ~~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~V----------------l--~~l~~~l~~~~-~~~~ 64 (843)
.|++++.+|.+.. .++ ..+++..+---.+|..+.+.|+.- + +++..++++|+ +|..
T Consensus 34 ~pgFv~~lLqIi~--~d~---~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvq 108 (1010)
T KOG1991|consen 34 QPGFVSSLLQIIM--DDG---VPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQ 108 (1010)
T ss_pred CCcHHHHHHHHHH--ccC---CchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHH
Confidence 4666666666654 122 122211222234667777767543 1 35555556665 5555
Q ss_pred HHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCCCcc--hHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhh
Q 003155 65 VLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL--SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSL 142 (843)
Q Consensus 65 ~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~~~~--~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l 142 (843)
--.|+..-+.- ..| +. ...+++.+-..|++++. --.|+-|+..+....+....+.-..-..+++..+|.++++
T Consensus 109 l~~~l~~Ii~~--D~p-~~--Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~ 183 (1010)
T KOG1991|consen 109 LTACLNTIIKA--DYP-EQ--WPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQI 183 (1010)
T ss_pred HHHHHHHHHhc--CCc-cc--chhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 55666666652 233 22 36688888888987754 4678889988886555211111111235677888988876
Q ss_pred HHHHhhc-c-CCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCC--------cc---------hhhhh
Q 003155 143 KAHLTDS-S-KDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPE--------YD---------IASMT 203 (843)
Q Consensus 143 ~~~l~~~-~-~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~--------~~---------vs~~~ 203 (843)
...+... + +..+..+-++++|-++.....|.-..+++.+..-+++.+.+.+-|- ++ +-+=+
T Consensus 184 ~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa 263 (1010)
T KOG1991|consen 184 FNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWA 263 (1010)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHH
Confidence 6554422 1 1225567788888887766555444444445566666666666541 11 22223
Q ss_pred HHHHHHHHHHhcccccccccCccc-------------------chHHH-----------------------HHHHHHHHH
Q 003155 204 FNFWHSLQVILTKRDSYISFGNEA-------------------SAEAE-----------------------RSRRLQVFR 241 (843)
Q Consensus 204 ~~FW~~l~~~~~~~~~~~s~~~~~-------------------~~~~~-----------------------~~~~~~~~~ 241 (843)
+.+-+.+.+...+ +.+.....+. ..+.. +...+...+
T Consensus 264 ~~~L~Rlf~Ryg~-~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~ 342 (1010)
T KOG1991|consen 264 LHILNRLFERYGS-PSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLK 342 (1010)
T ss_pred HHHHHHHHHHhCC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 3333333332111 1000000000 00000 012345556
Q ss_pred HHHHHHHHH-HHhhccCCC-CCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHH
Q 003155 242 SAYESLVSL-VSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIK 319 (843)
Q Consensus 242 ~~~~~L~~~-l~~k~~~p~-d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~ 319 (843)
|++.-++.. ++.-|.+-+ |.+.|++| -.+|-+-..|.=.++.+-. .. ..+++-.++.-=| ...++.+...
T Consensus 343 PHl~~ii~~vIFPlmc~~d~deelwe~D-P~EYiR~~~Di~ed~~sp~-~A-----a~~~l~~~~~KR~-ke~l~k~l~F 414 (1010)
T KOG1991|consen 343 PHLQVIIQDVIFPLMCFNDEDEELWEED-PYEYIRKKFDIFEDGYSPD-TA-----ALDFLTTLVSKRG-KETLPKILSF 414 (1010)
T ss_pred hHHHHHHHHhhhhhcCCCcccHHHHhcC-HHHHHHhcCchhcccCCCc-HH-----HHHHHHHHHHhcc-hhhhhhHHHH
Confidence 666555443 333344333 33345433 2222111111000000000 00 3345555555444 4566666665
Q ss_pred HHHHHhh---CCCCCCCcchhhHHHHHHHHhhccCCCccc--cchHHHh-hh-ccCCCC-cHHHHHHHHHHHHhhHH-HH
Q 003155 320 FVEGVAC---CGNKHNEWRPAEAALFCIRAISTYVSVVEA--EVMPQVM-AL-LPKLPQ-QPQLLQTVCLTIGAYSK-WF 390 (843)
Q Consensus 320 l~~~l~~---~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~--~~l~~l~-~~-l~~lp~-~~~v~~t~~~~ig~y~~-~l 390 (843)
+.+.+.+ ++.+..+-++.|.||++++++++-+....- ..+..++ .. ++-+.+ --.+|.-+||++++|++ -|
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df 494 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF 494 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC
Confidence 5555532 112356889999999999999987765421 2222222 11 122222 35899999999999994 44
Q ss_pred hhCCCCchhHHHHHHHHHhccCC-C--HHHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHhhcccCCCCCChhhH
Q 003155 391 DAASSDPSILASVLSILTSGMST-S--EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 464 (843)
Q Consensus 391 ~~~p~~~~~l~~vl~~l~~~l~~-~--~~v~~~A~~a~~~lc~~c~~---~l~~~~~~li~~~~~~~~~~~~~~l~~~~~ 464 (843)
+ .|. .+..++....++|.+ + + |+--|+-|++.+...|.. .+.++++.+++.+..+.+. ...++-
T Consensus 495 ~-d~~---~l~~ale~t~~~l~~d~~lP-V~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-----~End~L 564 (1010)
T KOG1991|consen 495 K-DPN---NLSEALELTHNCLLNDNELP-VRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-----VENDDL 564 (1010)
T ss_pred C-ChH---HHHHHHHHHHHHhccCCcCc-hhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-----cchhHH
Confidence 3 233 677777777777763 2 3 788999999999988884 4889999999999888653 344555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhh--HHHHHHHHHhhhccCC-cchHHHHH
Q 003155 465 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL--TVHIDRFAYIFRYVNH-PEAVADAI 541 (843)
Q Consensus 465 ~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~-~~~~~~~~ 541 (843)
..+++.+- ..- +++..+..-.+++.+.+..-++++......+..+.+.+ ...|+.++++..+++. |+.....-
T Consensus 565 t~vme~iV---~~f-seElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le 640 (1010)
T KOG1991|consen 565 TNVMEKIV---CKF-SEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE 640 (1010)
T ss_pred HHHHHHHH---HHH-HHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 55665443 322 24556666677777777777777642211111112222 2236777777776654 33233333
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCc---hHhHHHHHHHHHhCCCc
Q 003155 542 QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP---CFLYLSSEVIKIFGSDP 618 (843)
Q Consensus 542 ~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~---~~L~l~~~li~~fg~~~ 618 (843)
..+.|++.-++.... .++.|.++.+.... ..+.+.+.|.+=.+++.+...++..... .++-++...|. +|...
T Consensus 641 ~~~l~vi~~iL~~~i--~dfyeE~~ei~~~~-t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt-~g~~~ 716 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDI--TDFYEELLEIVSSL-TFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT-YGTPS 716 (1010)
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHhhh-hhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee-eCchh
Confidence 455666666665532 46677777766543 2333444554445555666666554321 11222221221 34322
Q ss_pred ch-hHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccC
Q 003155 619 SC-ASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 689 (843)
Q Consensus 619 ~~-~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~ 689 (843)
-. .+...+++..++... +.+ +-.+++| .+.-++++.-++..|-+ ..+..++.++..++..++.
T Consensus 717 ~~s~~~y~~il~~i~~~~---l~~--e~~~D~d-~~~a~kLle~iiL~~kg--~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 717 LLSNPDYLQILLEIIKKV---LTS--ENGEDSD-CESACKLLEVIILNCKG--LLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred hhccchHHHHHHHHHHHH---HcC--CCCchHH-HHHHHHHHHHHHHHhcC--cHhhHhHHHHHHHHHHHhc
Confidence 11 112222222323222 332 1223344 34456777777777777 2233567777777766664
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=3.8e-06 Score=94.18 Aligned_cols=278 Identities=10% Similarity=0.145 Sum_probs=185.6
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc--cccchHHHhhhc-cCCCCcHHHHHHHHHHHHhhHHHHhh----CCCC---chhH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALL-PKLPQQPQLLQTVCLTIGAYSKWFDA----ASSD---PSIL 400 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~--~~~~l~~l~~~l-~~lp~~~~v~~t~~~~ig~y~~~l~~----~p~~---~~~l 400 (843)
+.-|-+ +++=|.+|.|++.+++. ...+++.+++.+ -.+.++|++...+||.+-.+++=..+ +++. ..+.
T Consensus 418 ~sl~Vk-dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y 496 (859)
T KOG1241|consen 418 PSLWVK-DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY 496 (859)
T ss_pred chhhhc-chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH
Confidence 455766 99999999999999854 234455555554 35677999999999999888853321 2111 1266
Q ss_pred HHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHhhcccCCCCCCh-------hhHH
Q 003155 401 ASVLSILTSGMSTS----EDTAAAAALAFRHICDDCRKKLC----GYLDGLYNVYRTAVNGEGSLKVSA-------EDSL 465 (843)
Q Consensus 401 ~~vl~~l~~~l~~~----~~v~~~A~~a~~~lc~~c~~~l~----~~~~~li~~~~~~~~~~~~~~l~~-------~~~~ 465 (843)
+.+++-|+.+-+.. ..++.+|-.|+..+.+-|.+... .....++..+.+.++. ..++. +-+.
T Consensus 497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~---~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISS---QILSLADRAQLNELQS 573 (859)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HhccHhhHHHHHHHHH
Confidence 77777776554321 13889999999999876665443 4445555555555542 12222 2233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHH
Q 003155 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW 545 (843)
Q Consensus 466 ~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 545 (843)
.+...++.|++.+++ +..+..+.++.-+++-++. ..++ ....+ .+-.+++++..++. .+..+...+.
T Consensus 574 ~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s----~~s~---~v~e~---a~laV~tl~~~Lg~--~F~kym~~f~ 640 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES----KRSA---VVHEE---AFLAVSTLAESLGK--GFAKYMPAFK 640 (859)
T ss_pred HHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC----Cccc---cchHH---HHHHHHHHHHHHhH--hHHHHHHHHH
Confidence 466778888888876 5666666766666655555 2111 01112 24556666666653 4667888889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcC-----CchHhHHHHHHHHHhCCCcch
Q 003155 546 PIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ-----QPCFLYLSSEVIKIFGSDPSC 620 (843)
Q Consensus 546 ~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~-----~~~~L~l~~~li~~fg~~~~~ 620 (843)
|.+..-+.++. +..+.-.+..+++...|.++..+.||...++..+++.++... -|..|++.+-+....|.+ +
T Consensus 641 pyL~~gL~n~~-e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~--F 717 (859)
T KOG1241|consen 641 PYLLMGLSNFQ-EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD--F 717 (859)
T ss_pred HHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh--H
Confidence 98888887764 466778888889999999999999999999999999887522 367788877777777776 5
Q ss_pred hHHHHHHH
Q 003155 621 ASYLHNLI 628 (843)
Q Consensus 621 ~~~l~~~l 628 (843)
.+.+.-++
T Consensus 718 ~~Yl~~vm 725 (859)
T KOG1241|consen 718 EPYLEMVM 725 (859)
T ss_pred HHHHHHHH
Confidence 55554443
No 15
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.11 E-value=5.8e-11 Score=113.42 Aligned_cols=105 Identities=29% Similarity=0.448 Sum_probs=93.1
Q ss_pred CCCCchHHHHHHhhhccccccC-ccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc------hhhHHHHHHHHHHHHhc
Q 003155 3 SHPEFVPGFLELLTVLPEEVFN-YKIAARPERRRQFEKELTSQMEVALSTLTACLHI------NELKEQVLEAFASWLRL 75 (843)
Q Consensus 3 ~~~~~~~~~L~~L~~lpEE~~~-~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~------~~~~~~~L~cl~sWi~~ 75 (843)
++|.....+|++|+.+|||+.+ .+..++.+||.++++.|.+..+.|++++.++++. .++...+|+|+.+|+.|
T Consensus 37 ~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~ 116 (148)
T PF08389_consen 37 SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW 116 (148)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999987 3555678999999999999999999999999976 45889999999999995
Q ss_pred CCCCCCcccccchhHHHHHhhcCCCcchHHHHHHH
Q 003155 76 KHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 110 (843)
Q Consensus 76 ~~~i~~~~l~~~~ll~~~~~~L~~~~~~~~A~~~l 110 (843)
++.+.+.++++++.+|+.|.+++++++|++||
T Consensus 117 ---~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 117 ---IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp ---S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ---CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 77888888889999999999999999999997
No 16
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3e-06 Score=95.62 Aligned_cols=401 Identities=15% Similarity=0.179 Sum_probs=219.6
Q ss_pred HHHHHHHHHHhhHHHHHHHcCCchH-HHHHHHHHhhccCCC-cchhhhhHHHHHHHHHHhcccccccccCcccchHHHHH
Q 003155 157 KAIARLFADMGDSYVELIATGSDES-MLIVHALLEVASHPE-YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERS 234 (843)
Q Consensus 157 ~~l~~l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~~~-~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~ 234 (843)
..+|.+++-....|-.-+..-.+++ ..+..++...+.++. +.....++.|.....+.-
T Consensus 265 a~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~-------------------- 324 (960)
T KOG1992|consen 265 AQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP-------------------- 324 (960)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh--------------------
Confidence 3566666666655544333211122 233455555555653 445566788877665422
Q ss_pred HHHHHHHHHH--HHHHHHHHhhccCCCCCCCCChhhhHHh----Hhh-hccccccCCCcchhhhhhchhhHHHHHHhhhc
Q 003155 235 RRLQVFRSAY--ESLVSLVSFRVQYPQDYQDLSLEDLKEF----KHT-RYDLACCSSSTLTESVMLIAVADVLIDAASVL 307 (843)
Q Consensus 235 ~~~~~~~~~~--~~L~~~l~~k~~~p~d~~~~~~e~~e~f----~~~-R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl 307 (843)
.|..+| ...+..+.++...|.=... .+|+|-| -+| |+|+.-. ..+| =++.+.|.++..+...
T Consensus 325 ----~y~~~F~~~~vl~~i~e~VvlpN~~lR--~eDeElFED~pleYiRRDlEGs--DvdT---RRR~a~dlvrgL~~~f 393 (960)
T KOG1992|consen 325 ----HYAELFEGENVLAQICEKVVLPNLILR--EEDEELFEDNPLEYIRRDLEGS--DVDT---RRRAAIDLVRGLCKNF 393 (960)
T ss_pred ----hhHhhhcchHHHHHHHHhhcccccccc--hhhHHHhccCHHHHHHHhcccC--Ccch---hHHHHHHHHHHHHHHh
Confidence 112111 1344555566666641111 1111222 233 5552111 1111 1223668888777665
Q ss_pred ChhHHHHHHHHHHHHHHhh-CCCCCCCcchhhHHHHHHHHhhccCCCcc------ccc-------hHHHhhhccC--CCC
Q 003155 308 GGDATLKILYIKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVE------AEV-------MPQVMALLPK--LPQ 371 (843)
Q Consensus 308 ~~~~~l~~l~~~l~~~l~~-~~~~~~~W~~~Ea~L~~l~~iae~~~~~~------~~~-------l~~l~~~l~~--lp~ 371 (843)
. ..+..++...++..+++ +.+++.+|...+.++|.+.+++-...... ++. ..++.+.|.+ ..+
T Consensus 394 e-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~ 472 (960)
T KOG1992|consen 394 E-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNE 472 (960)
T ss_pred c-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcccc
Confidence 4 34666666666665543 34567899999999999999986533221 111 2233444433 234
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhh---------hhcCCHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRK---------KLCGYLD 441 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~---------~l~~~~~ 441 (843)
||.++..++..+.-+ .+++. ++++-..++-+.+++..+ .-|-..||.++-++-.-|.+ .++||+.
T Consensus 473 ~pilka~aIKy~~~F----R~ql~-~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~ 547 (960)
T KOG1992|consen 473 FPILKADAIKYIYTF----RNQLG-KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVE 547 (960)
T ss_pred ccchhhcccceeeee----cccCC-hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHH
Confidence 899998888766543 33432 247888888888888653 22668899999887655443 4557777
Q ss_pred HHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHH
Q 003155 442 GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI 521 (843)
Q Consensus 442 ~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l 521 (843)
.+++.+-..++.+ ...+...++.+|-.+++.++.. . .....+++.++.+++.....++.+-...++ ..
T Consensus 548 ~ll~nLf~a~s~p-----~~~EneylmKaImRii~i~~~~-i----~p~~~~~l~~Lteiv~~v~KNPs~P~fnHY--LF 615 (960)
T KOG1992|consen 548 ILLTNLFKALSLP-----GKAENEYLMKAIMRIISILQSA-I----IPHAPELLRQLTEIVEEVSKNPSNPQFNHY--LF 615 (960)
T ss_pred HHHHHHHHhccCC-----cccccHHHHHHHHHHHHhCHHh-h----hhhhhHHHHHHHHHHHHHhcCCCCchhHHH--HH
Confidence 7777666555432 1245678999999999987432 2 223344445555554433222222222333 36
Q ss_pred HHHHHhhhccCC--cchHHHHHHHHHHHHHHHHHhhcCCHHHHH---HHHHHHHHHHHhhh----hhhhhhHHHHHHHHH
Q 003155 522 DRFAYIFRYVNH--PEAVADAIQRLWPIFKAIFDIRAWDMRTME---SLCRACKYAVRTSK----RFMGITIGAILEEIQ 592 (843)
Q Consensus 522 ~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~il~~~~~~~~i~e---~~~~~l~~~i~~~~----~~~~p~l~~l~~~l~ 592 (843)
+.++.+++.... |..+......++|+++.++. +++.| -+...+...+...+ +.+.|++|.++.--
T Consensus 616 Esi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~-----eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~- 689 (960)
T KOG1992|consen 616 ESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS-----EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN- 689 (960)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH-
Confidence 888888887543 44455677799999999885 23333 23333333343332 24455555444321
Q ss_pred HHHhh-cCCchHhHHHHHHHHH
Q 003155 593 GLYQQ-HQQPCFLYLSSEVIKI 613 (843)
Q Consensus 593 ~~~~~-~~~~~~L~l~~~li~~ 613 (843)
...+ ...+..+.++..++..
T Consensus 690 -lW~r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 690 -LWKRSGNIPALVRLLQAFLKT 710 (960)
T ss_pred -HHhhcCCcHHHHHHHHHHHhc
Confidence 1222 3455666666666644
No 17
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.78 E-value=0.00016 Score=82.98 Aligned_cols=321 Identities=18% Similarity=0.198 Sum_probs=180.2
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHH----HHHHHhh-CCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhc---c
Q 003155 296 VADVLIDAASVLGGDATLKILYIK----FVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL---P 367 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~----l~~~l~~-~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l---~ 367 (843)
+.|.+..+..-.|. .-+..+.+. +++.-++ ..+....|...|+++++..++..+.. .+..+..+...+ .
T Consensus 382 ~rd~~~~v~~~f~~-~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~--~dd~l~~l~~~~~~~l 458 (1005)
T KOG2274|consen 382 VRDLLLEVITTFGN-EGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDA--NDDKLIELTIMIDNGL 458 (1005)
T ss_pred HHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHHHHHhhc
Confidence 66777777666663 233333333 3332211 11225679999999999998883321 122233232222 1
Q ss_pred CCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Q 003155 368 KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYN 445 (843)
Q Consensus 368 ~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~--~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~ 445 (843)
....-|.+..-++++++.|++=+..+|+ ++...++...++++. ++-+..+|+.+|...| -.+.+.|..+.+++
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~---~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild 533 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQ---LLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILD 533 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchh---HHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHH
Confidence 1122355555899999988776555665 788888877776643 3225566666666666 23567799999999
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHH--HH-----------------HHHHHhhhHHHHHHHHHHhcCC
Q 003155 446 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD--AK-----------------KALEMLCLPVVTPLQEIINQGP 506 (843)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~--~~-----------------~~l~~l~~p~~~~l~~~~~~~~ 506 (843)
.+.++.. +.+.+.-..++|+++.++.-=|... .. +++..+...++..+-+......
T Consensus 534 ~L~qlas-----~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 534 GLLQLAS-----KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHcc-----cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 9999875 3457777889999999998643211 10 1122222222222222211111
Q ss_pred c---------------cccccCchhhHHHHHHHHHhhhccCCcchHH-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 003155 507 E---------------ILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA-DAIQRLWPIFKAIFDIRAWDMRTMESLCRACK 570 (843)
Q Consensus 507 ~---------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~ 570 (843)
+ +..+..+......++.|++++|+.. .|.. ..+....|-+-++. .+..|...++....|+|
T Consensus 609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp--~pL~~~l~~~~FpaVak~t-lHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP--SPLPNLLICYAFPAVAKIT-LHSDDHETLQNATECLR 685 (1005)
T ss_pred chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC--CCccHHHHHHHhHHhHhhe-eecCChHHHHhHHHHHH
Confidence 0 0001112223445889999998743 3332 35567777666655 56778888888888888
Q ss_pred HHHHhhhhh-----hhhh--HHHHHHHHHHHHhh--cCCchHh--HHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Q 003155 571 YAVRTSKRF-----MGIT--IGAILEEIQGLYQQ--HQQPCFL--YLSSEVIKIFGSDPSCASYLHNLIEALFKR 634 (843)
Q Consensus 571 ~~i~~~~~~-----~~p~--l~~l~~~l~~~~~~--~~~~~~L--~l~~~li~~fg~~~~~~~~l~~~l~~l~~~ 634 (843)
..+..-.++ ..|- +-.++..+.+-+.. ....++. .+..+++..+|+. ..+.+.+++.+++.+
T Consensus 686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e--l~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE--LGPNLDQILRAVISR 758 (1005)
T ss_pred HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH--hchhHHHHHHHHHHH
Confidence 776442111 1111 12233333222221 2223332 3677788888876 666777777665543
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.55 E-value=0.0045 Score=71.75 Aligned_cols=520 Identities=12% Similarity=0.113 Sum_probs=250.3
Q ss_pred hHHHHHhhcCCC--cchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHH
Q 003155 89 LVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 166 (843)
Q Consensus 89 ll~~~~~~L~~~--~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~ 166 (843)
++..+.-.+..+ .+|..|+-++..+...... .++..++..+. ..+... ......+.+.+++.++
T Consensus 175 il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~----------~ly~~li~~Ll---~~L~~~-~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 175 ILKCLLPQLQSPRLAVRKKAITALGHLASSCNR----------DLYVELIEHLL---KGLSNR-TQMSATRTYIQCLAAI 240 (1233)
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHH---hccCCC-CchHHHHHHHHHHHHH
Confidence 333334444544 5688899999988866532 12222222221 111111 2234455666667776
Q ss_pred hhHHHHHHHcCCchHHHHHHHHHhhc---cCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHH
Q 003155 167 GDSYVELIATGSDESMLIVHALLEVA---SHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 243 (843)
Q Consensus 167 ~e~~~~~l~~~~~~~~~ll~~ll~~~---~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 243 (843)
+...=..+.+ +...+++++.+++ +-.++|.++.+++-...|...- .....|+
T Consensus 241 ~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc----------------------p~ei~p~ 295 (1233)
T KOG1824|consen 241 CRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC----------------------PKEILPH 295 (1233)
T ss_pred HHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC----------------------hhhhccc
Confidence 6554333333 3456777888877 5557788887777665554421 1234667
Q ss_pred HHHHHHHHHhhccCCCCCCCCC-hhhhHHh------HhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHH
Q 003155 244 YESLVSLVSFRVQYPQDYQDLS-LEDLKEF------KHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKIL 316 (843)
Q Consensus 244 ~~~L~~~l~~k~~~p~d~~~~~-~e~~e~f------~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l 316 (843)
...++..++++..|++++...+ +|+..+| .++-..-+.+....|+ .++..+.++..+..- + .++++.+
T Consensus 296 ~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWk---VRRaAaKcl~a~IsS-R-~E~L~~~ 370 (1233)
T KOG1824|consen 296 VPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWK---VRRAAAKCLEAVISS-R-LEMLPDF 370 (1233)
T ss_pred chHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHH---HHHHHHHHHHHHHhc-c-HHHHHHH
Confidence 7788999999999998643222 1111111 1110001112333343 334455555543321 2 3455555
Q ss_pred HHHHHHHHh-hC-CC-CCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccCCCCc-HHHHHHHHHHHHhhHHHHh
Q 003155 317 YIKFVEGVA-CC-GN-KHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFD 391 (843)
Q Consensus 317 ~~~l~~~l~-~~-~~-~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~lp~~-~~v~~t~~~~ig~y~~~l~ 391 (843)
++.+.-.+- .. .. .+..-.-+++.+-++..+..-.+.- +++.+.+ .+.|.+ ..+..+...++....+
T Consensus 371 ~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~-----~g~~s~~~~L~~~~~~iVkai~~--- 442 (1233)
T KOG1824|consen 371 YQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ-----GGTPSDLSMLSDQVPLIVKAIQK--- 442 (1233)
T ss_pred HHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc-----cCCccchHHHHhhhHHHHHHHHH---
Confidence 544432210 00 00 0000111222222222111111000 0000110 111111 1222222222222221
Q ss_pred hCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 003155 392 AASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 470 (843)
Q Consensus 392 ~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~ea 470 (843)
-+.+. .+....+-.-++.+....+..++++++.++..+...++. +- . .-..-+++
T Consensus 443 ------------------qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D----kS-s-ss~~ki~~ 498 (1233)
T KOG1824|consen 443 ------------------QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND----KS-S-SSNLKIDA 498 (1233)
T ss_pred ------------------HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC----cc-c-hHHHHHHH
Confidence 22211 113344555666777777788888888888777666642 21 1 22234566
Q ss_pred HHHHHhcC---CHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcch-----HHHHHH
Q 003155 471 LSMVITEL---PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEA-----VADAIQ 542 (843)
Q Consensus 471 ig~vi~~~---p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~~~ 542 (843)
++.+.+++ |++...+.+..+..|+...+++-.- +-....+-+...+++.+..-+| +-+++.
T Consensus 499 L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy-----------KisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~ 567 (1233)
T KOG1824|consen 499 LVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFY-----------KISAEALLVCQQLVKVIRPLQPPSSFDASPYVK 567 (1233)
T ss_pred HHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchH-----------hhhHHHHHHHHHHHHHhcccCCCccCCCChhHH
Confidence 66666553 6666677777777776555443211 1112223334444444332111 223555
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCC--Ccch
Q 003155 543 RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGS--DPSC 620 (843)
Q Consensus 543 ~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~--~~~~ 620 (843)
.+.....+-+..-..|.++.|++..|++..+-.+|......+|..+..+....++. ..-|..+..+-..+.. +-+.
T Consensus 568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeeh
Confidence 55555555555445688899999999999999999888888888888887777653 2333333444333433 2123
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHH
Q 003155 621 ASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILT 700 (843)
Q Consensus 621 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~ 700 (843)
.+.+.+++..+.+ .+.. .+--++..+..++..+++++... ++...++.++.-...-+.-.+......++.
T Consensus 646 ~~~l~~il~~l~~----flrK-----~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~Lisesdlhvt~~a~~ 715 (1233)
T KOG1824|consen 646 SPVLTEILPELAS----FLRK-----NQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPLISESDLHVTQLAVA 715 (1233)
T ss_pred hhhHHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3455555544432 2220 11124556666666666665332 232223333322212222334444556666
Q ss_pred HHHHhhc
Q 003155 701 FLSDIFD 707 (843)
Q Consensus 701 fl~~li~ 707 (843)
|++.+..
T Consensus 716 ~L~tl~~ 722 (1233)
T KOG1824|consen 716 FLTTLAI 722 (1233)
T ss_pred HHHHHHh
Confidence 6666664
No 19
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0095 Score=72.62 Aligned_cols=320 Identities=15% Similarity=0.151 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChh--HH-
Q 003155 236 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD--AT- 312 (843)
Q Consensus 236 ~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~--~~- 312 (843)
..+..+|++.+|++-+. |.+|++|. . +.+.+.+++..+-+| .+
T Consensus 988 a~~kl~p~l~kLIPrLy-RY~yDP~~----------------~-----------------Vq~aM~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 988 AGEKLEPYLKKLIPRLY-RYQYDPDK----------------K-----------------VQDAMTSIWNALITDSKKVV 1033 (1702)
T ss_pred HHHhhhhHHHHhhHHHh-hhccCCcH----------------H-----------------HHHHHHHHHHHhccChHHHH
Confidence 45677899999998887 46676651 1 334444444332211 11
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc-ccchHHHhhhccCC-CC-cHHHHHHHHHHHHhhHHH
Q 003155 313 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKL-PQ-QPQLLQTVCLTIGAYSKW 389 (843)
Q Consensus 313 l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~-~~~l~~l~~~l~~l-p~-~~~v~~t~~~~ig~y~~~ 389 (843)
=+++.+.+.+.+.+.. +..||-+||++.|+.-+-.+-+.++ .+.+|++-..+... .+ +-.||.++-.+....++.
T Consensus 1034 d~y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLT--SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334444444332 5789999999999998888755442 45667665555432 22 556666655544444443
Q ss_pred Hhh-----CCC-CchhHHHHHHHHH-hc-cCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCCh
Q 003155 390 FDA-----ASS-DPSILASVLSILT-SG-MSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 461 (843)
Q Consensus 390 l~~-----~p~-~~~~l~~vl~~l~-~~-l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~ 461 (843)
... |+. ..+.+..+++|+. .| ++.-+.|+..+-.++.++.+...+.+.||++.++..+.+..+. +++
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~-----lE~ 1186 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE-----LEP 1186 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc-----cch
Confidence 322 222 2368999999998 34 4444459999999999999999999999999999888887642 211
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHH
Q 003155 462 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI 541 (843)
Q Consensus 462 ~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 541 (843)
. .+. | +...+ .+...+.++. ++.-.. .. ... ++.|..+++..+ ..++
T Consensus 1187 ~-vLn-Y-----ls~r~-~~~e~ealDt--------~R~s~a--ks--------spm--meTi~~ci~~iD-----~~vL 1233 (1702)
T KOG0915|consen 1187 Q-VLN-Y-----LSLRL-INIETEALDT--------LRASAA--KS--------SPM--METINKCINYID-----ISVL 1233 (1702)
T ss_pred H-HHH-H-----HHHhh-hhhHHHHHHH--------HHHhhh--cC--------CcH--HHHHHHHHHhhh-----HHHH
Confidence 1 111 1 11111 1111111111 111000 00 011 345555554433 2366
Q ss_pred HHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcch
Q 003155 542 QRLWPIFKAIFDIR-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSC 620 (843)
Q Consensus 542 ~~~~~~l~~il~~~-~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~ 620 (843)
+++.|.+.+.+..- +-.+.+ .+-.++--.+..+|..+.|+...++..+...++....+.--.+++.+-..++-. -
T Consensus 1234 eelip~l~el~R~sVgl~Tkv--g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S--s 1309 (1702)
T KOG0915|consen 1234 EELIPRLTELVRGSVGLGTKV--GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS--S 1309 (1702)
T ss_pred HHHHHHHHHHHhccCCCCcch--hHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC--C
Confidence 77777776666432 112222 222233333444788888888888888887777633333335556655555533 1
Q ss_pred hHHHHHHHHHHHH
Q 003155 621 ASYLHNLIEALFK 633 (843)
Q Consensus 621 ~~~l~~~l~~l~~ 633 (843)
.+-...+++.+..
T Consensus 1310 ~dq~qKLie~~l~ 1322 (1702)
T KOG0915|consen 1310 PDQMQKLIETLLA 1322 (1702)
T ss_pred hHHHHHHHHHHHH
Confidence 2234444444433
No 20
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=0.0088 Score=67.04 Aligned_cols=165 Identities=18% Similarity=0.300 Sum_probs=117.0
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccC-C-CCcH
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQP 373 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-l-p~~~ 373 (843)
..+.+++|...-|...+++.+...+.+ ..||.-.+++..+++++++.+..-+..+|++++.+.. + ..||
T Consensus 239 a~kai~~~~~~~aVK~llpsll~~l~~---------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAVKLLLPSLLGSLLE---------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHHHhcCcchhhHhhhhhHHHHHH---------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 455677776666655565555444432 3799999999999999999887766677777777654 3 3599
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHH---------------------------------------HHHhccCCC
Q 003155 374 QLLQTVCLTIGAYSKWFDAASSDPSILASVLS---------------------------------------ILTSGMSTS 414 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~---------------------------------------~l~~~l~~~ 414 (843)
.||.++..++-+|++.+.+ |+ +...++ ++-+++++.
T Consensus 310 evr~a~~~~l~~~~svidN-~d----I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR 384 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDN-PD----IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER 384 (569)
T ss_pred HHHHHHHHHHHHHHHhhcc-HH----HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc
Confidence 9999999999999998763 32 333333 333444321
Q ss_pred -HHHHHHHHHHHHHHHHHh--hhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 415 -EDTAAAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 415 -~~v~~~A~~a~~~lc~~c--~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
......++..+-+.|..- .+.+.||++.|+..+...+.. ..++.|.-...++|.++..+.
T Consensus 385 st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-----~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 385 STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-----AVPEVRAVAARALGALLERLG 447 (569)
T ss_pred cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-----CChhHHHHHHHHHHHHHHHHH
Confidence 113456777777777776 567889999999998888742 247888889999998887753
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.91 E-value=0.095 Score=61.33 Aligned_cols=326 Identities=12% Similarity=0.150 Sum_probs=170.5
Q ss_pred CCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhcc
Q 003155 332 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 411 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l 411 (843)
.+-...--++..+|-++.+.+.....-++.++-.-.+-| |..|..++.+.+|+.+- . .++..++|++.-+
T Consensus 831 s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp-~edvksAAs~ALGsl~v-----g----nl~~yLpfil~qi 900 (1233)
T KOG1824|consen 831 SSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP-SEDVKSAASYALGSLAV-----G----NLPKYLPFILEQI 900 (1233)
T ss_pred CchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC-hHHHHHHHHHHhhhhhc-----C----chHhHHHHHHHHH
Confidence 333444456677777777776655444554332222223 77999999999998763 1 3555666777666
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003155 412 STSEDTAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEML 490 (843)
Q Consensus 412 ~~~~~v~~~A~~a~~~lc~~c~~-~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l 490 (843)
....+=+.---++|+.+....+. .+-|+++.|-..+.+-..+ .....|.-+-|++|.++..-|. ...+
T Consensus 901 ~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~-----~eegtR~vvAECLGkL~l~epe-sLlp----- 969 (1233)
T KOG1824|consen 901 ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCEC-----AEEGTRNVVAECLGKLVLIEPE-SLLP----- 969 (1233)
T ss_pred hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhccc-----chhhhHHHHHHHhhhHHhCChH-HHHH-----
Confidence 54332466666777776655443 4568888888776655432 2345688899999999987653 2322
Q ss_pred hhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHh-hhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 003155 491 CLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI-FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 569 (843)
Q Consensus 491 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l 569 (843)
+|+..+....+ ... ...++++ |.....|+|.-+++++...-+...++. .|-+++..+..++
T Consensus 970 ------kL~~~~~S~a~-------~~r---s~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~d--pDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 970 ------KLKLLLRSEAS-------NTR---SSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRD--PDLEVRRVALVVL 1031 (1233)
T ss_pred ------HHHHHhcCCCc-------chh---hhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhC--CchhHHHHHHHHH
Confidence 23333332211 111 1223332 222234666655655444433333322 2445555555555
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHH-----hCC--Ccc--hhHHHHHHHHHHHHH------
Q 003155 570 KYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKI-----FGS--DPS--CASYLHNLIEALFKR------ 634 (843)
Q Consensus 570 ~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~-----fg~--~~~--~~~~l~~~l~~l~~~------ 634 (843)
...+..=..-+..++|.+++.+.+.-.. =+.+|+. |.+ |.+ .+...-+.+..+...
T Consensus 1032 nSaahNKpslIrDllpeLLp~Ly~eTkv---------rkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~d 1102 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIRDLLPELLPLLYSETKV---------RKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLD 1102 (1233)
T ss_pred HHHHccCHhHHHHHHHHHHHHHHHhhhh---------hHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4444322223344555555544432111 0112222 222 110 111111111111111
Q ss_pred HHHhhcc-cccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccC--------C----ChhHHHHHHHH
Q 003155 635 TTCLLTS-IEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV--------Q----HREASNSILTF 701 (843)
Q Consensus 635 ~~~~l~~-~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~--------~----e~~~~~s~~~f 701 (843)
..++++. ..++.+|-|+.-=.|-++.|+...||+.++.. ++++++-.-..+.. + .-+-.|+|++.
T Consensus 1103 it~Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~Vlqr--lD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRa 1180 (1233)
T KOG1824|consen 1103 ITEFLNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQR--LDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRA 1180 (1233)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHH--HHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHH
Confidence 1222221 24678899999999999999999999987652 34444432222221 1 12445777777
Q ss_pred HHHhhc
Q 003155 702 LSDIFD 707 (843)
Q Consensus 702 l~~li~ 707 (843)
+..+..
T Consensus 1181 v~~L~~ 1186 (1233)
T KOG1824|consen 1181 VAALLT 1186 (1233)
T ss_pred HHHHhc
Confidence 777754
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.90 E-value=0.083 Score=60.08 Aligned_cols=175 Identities=11% Similarity=0.149 Sum_probs=110.4
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccC-CC-CcH
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQP 373 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-lp-~~~ 373 (843)
+.++...+...+|...+=+.+-..+...+..+- ..+=.+.-..|-+++.+...+.....+++|++++.+.. +. ..+
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Af--qeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa 813 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAF--QEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSA 813 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHH--HhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCCh
Confidence 777777777777753332222222222221110 01111122567788888888777678899999887543 33 368
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHh
Q 003155 374 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~--~~~v~~~A~~a~~~lc~~c~-~~l~~~~~~li~~~~~~ 450 (843)
.+|..+..++|+.+.-++...+. ..+..+=..|...+.. |+ |-..--.|+..|+..-. ..+.|=+..|+..+..+
T Consensus 814 ~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypE-vLgsILgAikaI~nvigm~km~pPi~dllPrltPI 891 (1172)
T KOG0213|consen 814 KVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI 891 (1172)
T ss_pred hHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHH-HHHHHHHHHHHHHHhccccccCCChhhhcccchHh
Confidence 99999999999999988765431 2333333445566754 45 77777788888876543 34667777777777777
Q ss_pred hcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 451 VNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 451 ~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
+.+. ..+.+...+.-+|.+....|
T Consensus 892 Lknr-----heKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 892 LKNR-----HEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred hhhh-----HHHHHHHHHHHHHHHHhcCc
Confidence 7541 24567777888888877654
No 23
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.078 Score=59.60 Aligned_cols=652 Identities=13% Similarity=0.140 Sum_probs=303.8
Q ss_pred CCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhH-HHHHHHHHHhhhc--------h-------hhHHHHHHH
Q 003155 5 PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQM-EVALSTLTACLHI--------N-------ELKEQVLEA 68 (843)
Q Consensus 5 ~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~-~~Vl~~l~~~l~~--------~-------~~~~~~L~c 68 (843)
-+.-.+-+.+|..|-.|+...+-..+..+.+++-..+++.+ -+|+.+-.+.+.. . .+...+++|
T Consensus 142 ve~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~C 221 (1082)
T KOG1410|consen 142 VEHCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNC 221 (1082)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhh
Confidence 34445678999999999986654334444445555553322 3455443333321 1 134445667
Q ss_pred HHH-HHhcCC----------CCCCc---ccccchhHHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHH
Q 003155 69 FAS-WLRLKH----------RIPGS---VLASHPLVLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLI 132 (843)
Q Consensus 69 l~s-Wi~~~~----------~i~~~---~l~~~~ll~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li 132 (843)
+.- +|.-.. .||.. .+.++..+++.|+..+ .+++.+.|+.|++.+.+..+.... +. +..+.+
T Consensus 222 l~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN-~a-eRa~yl 299 (1082)
T KOG1410|consen 222 LNFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN-GA-ERAKYL 299 (1082)
T ss_pred ccccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC-CH-HHHHHH
Confidence 652 221100 12211 1224667888888776 578999999999999987764321 11 223455
Q ss_pred HHHHHHHHhhHHHHhh--ccCCHHHHHHHHHHHHHHhhHHH-HHHHc--CCchHHH-HHHHHHhhccCCC--cchhhhhH
Q 003155 133 QVIVPQIMSLKAHLTD--SSKDEEDVKAIARLFADMGDSYV-ELIAT--GSDESML-IVHALLEVASHPE--YDIASMTF 204 (843)
Q Consensus 133 ~~l~~~~~~l~~~l~~--~~~d~~~~~~l~~l~~~~~e~~~-~~l~~--~~~~~~~-ll~~ll~~~~~~~--~~vs~~~~ 204 (843)
+.++..+ +..+.. +-.|.+....+||++..+--+|- .-++. +-++..+ +.++.+....|=+ .+-...-+
T Consensus 300 ~~Lv~Gv---k~il~np~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLl 376 (1082)
T KOG1410|consen 300 QHLVEGV---KRILENPQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLL 376 (1082)
T ss_pred HHHHHHH---HHHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 5554333 233332 23466677788888777655542 11111 1122222 2233333333221 12234557
Q ss_pred HHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHH-HHHHHHHHhhc--cCCCCCCCCChhhhHHhHhhhccccc
Q 003155 205 NFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY-ESLVSLVSFRV--QYPQDYQDLSLEDLKEFKHTRYDLAC 281 (843)
Q Consensus 205 ~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~L~~~l~~k~--~~p~d~~~~~~e~~e~f~~~R~~~~~ 281 (843)
.+|..+..... |. .+++| .....|.|-+ ...+..=+... ..|++.++ +-|+.+... +
T Consensus 377 t~WqRmvaSVP----yv-k~~~p-------hlLd~y~PeIt~afi~SRl~sV~~ivrd~~d~-PLdd~~~~~----q--- 436 (1082)
T KOG1410|consen 377 TLWQRMVASVP----YV-KNTEP-------HLLDTYCPEITKAFITSRLQSVEIIVRDGLDD-PLDDTGAVQ----Q--- 436 (1082)
T ss_pred HHHHHHHhcCC----cc-cCCCh-------HHHhhhcHHHHHHHHHHHhhhhheecccCCCC-cchhhHHHH----H---
Confidence 88988875531 21 12222 2222333211 11111111111 11333222 112221111 1
Q ss_pred cCCCcchhhhhhchhhHHHHHHhhhcCh------hHHHHHHHHHHHHHHhhCCCCCCCcchhhH----HHHHHHHhhcc-
Q 003155 282 CSSSTLTESVMLIAVADVLIDAASVLGG------DATLKILYIKFVEGVACCGNKHNEWRPAEA----ALFCIRAISTY- 350 (843)
Q Consensus 282 ~~~~~~~~~~~~~~~~d~l~~~~~vl~~------~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea----~L~~l~~iae~- 350 (843)
.-|.+-.+|+.=-. ...++...+..++........+.+-.-.|+ .+|.+|++..+
T Consensus 437 --------------~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk 502 (1082)
T KOG1410|consen 437 --------------QLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGK 502 (1082)
T ss_pred --------------HHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcce
Confidence 22333333322110 012222223333333221112334444444 34555555332
Q ss_pred CC---Ccc-----ccchHHHhhhc----cCCCC--cHHHHHHHHHHHHhhHH-HHh------------------hCCCCc
Q 003155 351 VS---VVE-----AEVMPQVMALL----PKLPQ--QPQLLQTVCLTIGAYSK-WFD------------------AASSDP 397 (843)
Q Consensus 351 ~~---~~~-----~~~l~~l~~~l----~~lp~--~~~v~~t~~~~ig~y~~-~l~------------------~~p~~~ 397 (843)
+. .++ .+....+++.+ ..+|. +.++-.+.++.+.+|-+ |+. -|.+ .
T Consensus 503 ~t~~Std~~d~mDgEL~arvlql~nlmdsr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de-~ 581 (1082)
T KOG1410|consen 503 TTATSTDEHDAMDGELSARVLQLVNLMDSRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDE-S 581 (1082)
T ss_pred ecccccchhhhhhhHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-H
Confidence 11 111 23344444432 23442 55666666666655543 332 2221 1
Q ss_pred hhHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHhh--hhhc--CCHHHHHHHHH----HhhcccCCCCC-ChhhHH
Q 003155 398 SILASVLSILTSGMS---TSEDTAAAAALAFRHICDDCR--KKLC--GYLDGLYNVYR----TAVNGEGSLKV-SAEDSL 465 (843)
Q Consensus 398 ~~l~~vl~~l~~~l~---~~~~v~~~A~~a~~~lc~~c~--~~l~--~~~~~li~~~~----~~~~~~~~~~l-~~~~~~ 465 (843)
..|..++..+...+. ..+.+....-..|..+.-... +.|+ +-+.-+++... ..+ +...++ ....|.
T Consensus 582 ~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FL--g~~~~~~~~r~RT 659 (1082)
T KOG1410|consen 582 DVLGVIVGKILTNLKYWGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFL--GINIDLQDMRCRT 659 (1082)
T ss_pred HHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCccc--ccCccchhhhhHh
Confidence 255566666655552 222367777777766664422 2222 11111111000 000 001112 235677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC-------cchHH
Q 003155 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-------PEAVA 538 (843)
Q Consensus 466 ~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-------~~~~~ 538 (843)
..|+++|.++-.--. +-..-+++++.|+....+.+++.-+.+. ....++. ..|..+.|.+.+ .-.+.
T Consensus 660 TFY~al~rLl~~d~s-ede~~fe~fm~PLt~~fe~v~~~~~nn~--f~ee~vK---~~liGL~RDLRGiA~A~~tktsy~ 733 (1082)
T KOG1410|consen 660 TFYTALTRLLMVDLS-EDEDMFERFMLPLTDAFEGVLQVFQNNC--FEEEQVK---RILIGLCRDLRGIAFASNTKTSYQ 733 (1082)
T ss_pred HHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHhcccc--ccHHHHH---HHHHHHHHHhhhhhhhhccchHHH
Confidence 799999999975222 2234467788898888887776544321 1111222 122333333321 11111
Q ss_pred ----HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---------------------------HhhhhhhhhhHHHH
Q 003155 539 ----DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV---------------------------RTSKRFMGITIGAI 587 (843)
Q Consensus 539 ----~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i---------------------------~~~~~~~~p~l~~l 587 (843)
-..-..+|++....++|.+.+++.--+.+.+...+ -.+|..+.. +|.+
T Consensus 734 ~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~-Lp~v 812 (1082)
T KOG1410|consen 734 MLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQ-LPEV 812 (1082)
T ss_pred HHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhc-ccCc
Confidence 12347789999999999888877655555555433 112221111 0111
Q ss_pred HHHHHHHHhhcCCc-hHhHHHHHHHHH---hCCCcch-hHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHH
Q 003155 588 LEEIQGLYQQHQQP-CFLYLSSEVIKI---FGSDPSC-ASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRC 662 (843)
Q Consensus 588 ~~~l~~~~~~~~~~-~~L~l~~~li~~---fg~~~~~-~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~ 662 (843)
-.-=+=.++-...+ ||.-+-..+... ||--.-+ ...+.+.+..++.-.+++= .+++-+++-+.++||+|+..+
T Consensus 813 skdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp--~sD~l~Y~Klsqsyy~llE~l 890 (1082)
T KOG1410|consen 813 SKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSIP--HSDLLSYRKLSQSYYNLLEVL 890 (1082)
T ss_pred chhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcCC--HHHHHhHHHHHHHHhhHHHHH
Confidence 11000011222333 333333444333 2210000 1245555555544333221 256678899999999999998
Q ss_pred HhhC-CCcc-cCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Q 003155 663 IRYC-PQLF-IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 707 (843)
Q Consensus 663 ~~~~-p~~~-~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~ 707 (843)
.+.+ |-+. +..+.+..++...-.|++.-+.....++|.-+..+++
T Consensus 891 ~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~t 937 (1082)
T KOG1410|consen 891 TQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVT 937 (1082)
T ss_pred HhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHH
Confidence 8754 4433 2344567677666677776677777888888877776
No 24
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.84 E-value=0.00012 Score=79.84 Aligned_cols=208 Identities=17% Similarity=0.227 Sum_probs=114.5
Q ss_pred HHHHHHHhhccCC-CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHH--HHHHHHHHH-HHHhhccCC
Q 003155 183 LIVHALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RSAYESLVS-LVSFRVQYP 258 (843)
Q Consensus 183 ~ll~~ll~~~~~~-~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~L~~-~l~~k~~~p 258 (843)
.+.++|......+ .+.+...++.|...+.+... ....| ++++.+++. +++..|.+-
T Consensus 141 ~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~--------------------~~~lf~~~~~L~~Iie~VI~Pnl~~~ 200 (370)
T PF08506_consen 141 AVWNLLTKISQQPKYDILVSKALQFLSSVAESPH--------------------HKNLFENKPHLQQIIEKVIFPNLCLR 200 (370)
T ss_dssp HHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH--------------------HHTTT-SHHHHHHHHHHTHHHHHS--
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh--------------------HHHHhCCHHHHHHHHHHhccCccCCC
Confidence 4556666655544 34566678888766543221 11112 566677666 556666665
Q ss_pred CC-CCCCChhhhHHhHhh-hccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhh-CCCCCCCcc
Q 003155 259 QD-YQDLSLEDLKEFKHT-RYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGNKHNEWR 335 (843)
Q Consensus 259 ~d-~~~~~~e~~e~f~~~-R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~-~~~~~~~W~ 335 (843)
++ .+-|++| -.+| |+|+.. +...|-+ ..+.|.++.++.--+ +.+.+.+...+++.+.+ ..++..+|+
T Consensus 201 e~D~ElfEdd----P~EYIrrd~e~--sd~~TrR---~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 201 EEDEELFEDD----PEEYIRRDLEG--SDSDTRR---RAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HHHHHHHHHS----HHHHHHHHSCS--S---SHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred HHHHHHHccC----HHHHHHhhccc--cccCCcH---HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 42 2223211 1222 333211 1111111 127788888776655 55777766666666542 112368999
Q ss_pred hhhHHHHHHHHhhccCCCcc------ccc--hHHHhh-----hcc-CCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHH
Q 003155 336 PAEAALFCIRAISTYVSVVE------AEV--MPQVMA-----LLP-KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA 401 (843)
Q Consensus 336 ~~Ea~L~~l~~iae~~~~~~------~~~--l~~l~~-----~l~-~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~ 401 (843)
..++|++.+++++....... ++. +.+++. .|. ..+.||.++..+++.+..|..-+. . +.+.
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~--~~l~ 345 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---K--EQLL 345 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----H--HHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---H--HHHH
Confidence 99999999999998764321 111 222222 222 223589999999999998776543 2 4788
Q ss_pred HHHHHHHhccCCCHH-HHHHHHHHH
Q 003155 402 SVLSILTSGMSTSED-TAAAAALAF 425 (843)
Q Consensus 402 ~vl~~l~~~l~~~~~-v~~~A~~a~ 425 (843)
.+++.+.+.|.++.- |..-||.|+
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 899999999987642 556777664
No 25
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.13 Score=57.08 Aligned_cols=291 Identities=10% Similarity=0.045 Sum_probs=170.2
Q ss_pred cchHHHhhhccCC----CCcHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHHHHhccCCC----------------H
Q 003155 357 EVMPQVMALLPKL----PQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSILTSGMSTS----------------E 415 (843)
Q Consensus 357 ~~l~~l~~~l~~l----p~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~vl~~l~~~l~~~----------------~ 415 (843)
++.+.++..|..- -...-.|-+...++|.+-.+- |+.. ..+..+..+....+.+. +
T Consensus 494 ~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~---~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~ 570 (858)
T COG5215 494 KFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC---PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVE 570 (858)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3444555555321 113466777777777665543 3211 23333333333322110 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHH
Q 003155 416 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 495 (843)
Q Consensus 416 ~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~ 495 (843)
++++.-+.-+..+....+..+-+--++|++.+..++... -+.-....+|.+||.+...+ .+....++..+...+.
T Consensus 571 elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~----~~t~~~~dV~~aIsal~~sl-~e~Fe~y~~~fiPyl~ 645 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILEST----KPTTAFGDVYTAISALSTSL-EERFEQYASKFIPYLT 645 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc----CCchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHH
Confidence 477777777888888888888888888999888887642 12334556888888888776 3445555555443333
Q ss_pred HHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Q 003155 496 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 575 (843)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~ 575 (843)
..+ ++.+ ..-....++.++.+.+.++. .+..+...+|..+.+.++.-..+-++--.+..+++.+.-.
T Consensus 646 ~al-n~~d----------~~v~~~avglvgdlantl~~--df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 646 RAL-NCTD----------RFVLNSAVGLVGDLANTLGT--DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHh-cchh----------HHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 333 2111 01123346777777777653 4556777788888887766555556666889999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHH------H-HHHHh-CCCcchhHHHHHHHHHHHHHHHHhhcc-cccCC
Q 003155 576 SKRFMGITIGAILEEIQGLYQQHQQPCFLYLSS------E-VIKIF-GSDPSCASYLHNLIEALFKRTTCLLTS-IEEFT 646 (843)
Q Consensus 576 ~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~------~-li~~f-g~~~~~~~~l~~~l~~l~~~~~~~l~~-~~~~~ 646 (843)
.|..+.+|+..++-.+.+.-+..|++.-++... . +...| |-.....+.+..++..+. ..+..+.. ..++.
T Consensus 713 iga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~-sif~~i~~iaeDp~ 791 (858)
T COG5215 713 IGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVI-SIFHKIGMIAEDPN 791 (858)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHH-HHHHHHHHhhcCCc
Confidence 999999999999988888877777764333211 1 11111 111112223333332221 22333321 12333
Q ss_pred cCCchHHHHHHHHHHHHhhCCCc
Q 003155 647 SRPDVADDCFLLASRCIRYCPQL 669 (843)
Q Consensus 647 ~~pD~~~~~f~l~~~~~~~~p~~ 669 (843)
-..++.++-.+|+..+...+|.-
T Consensus 792 ~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 792 GSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred cchhHHHHHHHHHHHHHHhCCCc
Confidence 34456788999999999988865
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.066 Score=59.24 Aligned_cols=378 Identities=11% Similarity=0.109 Sum_probs=188.3
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 406 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~ 406 (843)
+..+.++-|+-+-+..+-..+-.+ +...+.++++.|.+ . +.|.--|+.+ ++|--+-=++-.+++..|+..+++-
T Consensus 11 dKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGg--LiGlAA~~iaLg~~~~~Y~~~iv~P 88 (675)
T KOG0212|consen 11 DKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGG--LIGLAAVAIALGIKDAGYLEKIVPP 88 (675)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccch--HHHHHHHHHHhccccHHHHHHhhHH
Confidence 445667777777777776655444 44567777775421 1 2222112222 2222222222233333477777777
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH-----
Q 003155 407 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ----- 480 (843)
Q Consensus 407 l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~----- 480 (843)
++.+++++. +++..||.+++++|+-|+....+|++.|.+.+-.+....|. . .+.- .|-+-.++.....
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~-~--V~~~---aeLLdRLikdIVte~~~t 162 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ-N--VRGG---AELLDRLIKDIVTESAST 162 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc-c--cccH---HHHHHHHHHHhccccccc
Confidence 777777653 48899999999999999999999999999998887643211 1 1111 1111111211111
Q ss_pred ---HHHHHHHH-------HhhhHHHHHHHHHHhcCCccccccCchhhHHHH-HHHHHhhhccCCcchH-HHHHHHHH-HH
Q 003155 481 ---VDAKKALE-------MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI-DRFAYIFRYVNHPEAV-ADAIQRLW-PI 547 (843)
Q Consensus 481 ---~~~~~~l~-------~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~-~~~~~~~~-~~ 547 (843)
+...+.+. ....-.+-.|-.++...+. .+....+ +.+..+|..++.+++- ....+..+ .+
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-------~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-------LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-------HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 11111111 1111122233333332221 1111111 2233333333332221 10111100 11
Q ss_pred HHHHH----------------Hhh-cCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCc-h-HhH--H
Q 003155 548 FKAIF----------------DIR-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP-C-FLY--L 606 (843)
Q Consensus 548 l~~il----------------~~~-~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~-~-~L~--l 606 (843)
+.++- ... ..++.+-..+...+...+...|..+.++++.++..++.....++.. . ... .
T Consensus 236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 11111 111 1234455566666666777788888898888887776555544332 1 111 0
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHh
Q 003155 607 SSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIG 686 (843)
Q Consensus 607 ~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~ 686 (843)
-..+...++....-. .+. +..++......+ ..+.-|.+-+.++-+..+..+.|+.++. ....+|...+.+
T Consensus 316 n~~l~~l~s~~~~~~-~id--~~~ii~vl~~~l-----~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~t 385 (675)
T KOG0212|consen 316 NGLLLKLVSSERLKE-EID--YGSIIEVLTKYL-----SDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHhhhhhcc-ccc--hHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHh
Confidence 011222222210000 011 122222222222 2355677888888898889999987765 235566666667
Q ss_pred ccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHH----------HhhhhHHHHHHH
Q 003155 687 ITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSV----------IIPRGASITRIL 736 (843)
Q Consensus 687 l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~----------~~~~g~~lv~~l 736 (843)
+.-+.-+.+.-++..+..+.... +.+.++.....+ +...|..+++++
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~---~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSS---NSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCc---ccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 77666677777787777777532 233444433333 345677777765
No 27
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.12 Score=56.84 Aligned_cols=385 Identities=13% Similarity=0.046 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHhhcccCCC-CCChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhH
Q 003155 417 TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSL-KVSAEDSLHLVEALSMVITE-LPQVDAKKALEMLCLP 493 (843)
Q Consensus 417 v~~~A~~a~~~lc~~-c~~~l~~~~~~li~~~~~~~~~~~~~-~l~~~~~~~l~eaig~vi~~-~p~~~~~~~l~~l~~p 493 (843)
++.-|-..+..+.++ -++.++-.-+.+++...+..+++... -.+...+..++.++...=-+ +..+...++....+.|
T Consensus 313 L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~Lqp 392 (748)
T KOG4541|consen 313 LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLGSNKLQP 392 (748)
T ss_pred hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 777777888888877 44567777777888877777642111 23456788888888765433 4557788888899999
Q ss_pred HHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHH---HHhhcCCHHHHHHHHHHHH
Q 003155 494 VVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAI---FDIRAWDMRTMESLCRACK 570 (843)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~i---l~~~~~~~~i~e~~~~~l~ 570 (843)
+-+++-...++.... +...+++..+++.+.+....+ .+.....++-++-.+... +..+....+++..+...+-
T Consensus 393 L~~Rf~~~~nq~~q~---~~~~~Ii~~l~~~~g~a~a~q-~d~~~~Lf~fL~~~~~~c~glm~s~~~~~~~v~~i~~~~v 468 (748)
T KOG4541|consen 393 LPSRFFTYFNQHNQG---KFVLDIIVRLSLTSGTAYAGQ-KDLQRSLFQFLVLSAYGCRGLMASNQYVKDLVAHITSSLV 468 (748)
T ss_pred cHHHHHHHhcccchh---hHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHH
Confidence 999988888765422 112334444444444333322 122222333333333221 2223333444433333322
Q ss_pred HHHHh----hh---hhhhhhHHHHHHHHHHHHhhc-----------------CCchHhHHHHHHHHH-hCCCc---chhH
Q 003155 571 YAVRT----SK---RFMGITIGAILEEIQGLYQQH-----------------QQPCFLYLSSEVIKI-FGSDP---SCAS 622 (843)
Q Consensus 571 ~~i~~----~~---~~~~p~l~~l~~~l~~~~~~~-----------------~~~~~L~l~~~li~~-fg~~~---~~~~ 622 (843)
..... .+ +.+.-|.. .+ .+.+.|.+. ...-++.+++.+.++ |..+. ....
T Consensus 469 dvs~k~~~y~~~e~~~~~ly~s-cl-ql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~~~ 546 (748)
T KOG4541|consen 469 DVSNKSDLYNLAEQPDIILYVS-CL-QLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQSTN 546 (748)
T ss_pred HhhhhhhhhccccChhHHHHHH-HH-HHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhcccccccccc
Confidence 21110 00 01111100 00 112222211 112344555554444 22111 0110
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccC--cCCcHHHHHHHHHhccC-CChhHHHHHH
Q 003155 623 YLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITV-QHREASNSIL 699 (843)
Q Consensus 623 ~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~--s~~l~~i~~~~~~~l~~-~e~~~~~s~~ 699 (843)
...+++-.=....+.+++ .+.-..|.+.-+||+++.=+....|..+-+ .....+..+|.-.|++- .+.....+..
T Consensus 547 G~a~VV~~gl~~ilplm~--~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~ 624 (748)
T KOG4541|consen 547 GIAQVVYFGLHIILPLMT--LELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDP 624 (748)
T ss_pred CcceEEEeeHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccCh
Confidence 101111000111122222 233468999999999998888888887644 23456666766555552 2222223333
Q ss_pred HHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHccc-CCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhC
Q 003155 700 TFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTG-ALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLI 778 (843)
Q Consensus 700 ~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~-~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~~~ 778 (843)
.-+..|-+.+.......- -.++.+ .+++.+|.-+.. ....+.....++.|+.|....|..+.++..+.++
T Consensus 625 e~v~hfgspankgrcTqn----lafL~~---efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~s-- 695 (748)
T KOG4541|consen 625 EGVFHFGSPANKGRCTQN----LAFLSR---EFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELIS-- 695 (748)
T ss_pred Hhhhcccccccccccccc----HHHHHH---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh--
Confidence 333343332211100000 012222 233334443332 3355677789999999999999999998887763
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--------cCCCchhhhHHHHHHHHHHhh
Q 003155 779 PLTALAEVERSRFLQALSEAA--------SGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 779 P~~~~t~~~~~~f~~~l~~~~--------~~~~~~~~~~~~~~F~~~~r~ 820 (843)
++.++.-|++.-+...... +.+++.+||+-+.+|..-.-|
T Consensus 696 --kq~np~~~qrLa~Af~~Lt~sn~~psldR~~~~~Frk~le~Fl~~V~G 743 (748)
T KOG4541|consen 696 --KQANPNFKQRLANAFQVLTTSNQLPSLDRLNYQRFRKNLENFLVEVLG 743 (748)
T ss_pred --hccChHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhhc
Confidence 3456777888777665542 234556888889999876555
No 28
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.35 Score=55.43 Aligned_cols=270 Identities=12% Similarity=0.117 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHHHHHHhhC---CCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhh------ccCCCC-cHHHHH
Q 003155 308 GGDATLKILYIKFVEGVACC---GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL------LPKLPQ-QPQLLQ 377 (843)
Q Consensus 308 ~~~~~l~~l~~~l~~~l~~~---~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~------l~~lp~-~~~v~~ 377 (843)
+++..++-+.+.+...+.++ +..-.+-++.|.|++.+.+|..-++.. + ....+++. ++.+.+ .-.++.
T Consensus 401 rke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~-s-p~an~me~fiv~hv~P~f~s~ygfL~S 478 (970)
T COG5656 401 RKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKM-S-PAANVMEYFIVNHVIPAFRSNYGFLKS 478 (970)
T ss_pred cchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccC-c-hHHHHHHHHHHHHhhHhhcCcccchHH
Confidence 33555666666666655332 111246778999999999998844332 2 22222222 122222 357889
Q ss_pred HHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHH--hhhhhcCCHHHHHHHHHHhhcc
Q 003155 378 TVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS--EDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVNG 453 (843)
Q Consensus 378 t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~--~~v~~~A~~a~~~lc~~--c~~~l~~~~~~li~~~~~~~~~ 453 (843)
-+|+++++|+.-++... .+..+..-....+.+. + |+-.||.|+.-+... ....+..|++..++.+..+.+.
T Consensus 479 race~is~~eeDfkd~~----ill~aye~t~ncl~nn~lp-v~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 479 RACEFISTIEEDFKDNG----ILLEAYENTHNCLKNNHLP-VMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred HHHHHHHHHHHhcccch----HHHHHHHHHHHHHhcCCcc-hhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 99999999988776543 3444444444444332 3 788899999887643 3345668899999888877543
Q ss_pred cCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHH----HHHHHHhcCCccccccCchhhH--HHHHHHHHh
Q 003155 454 EGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVT----PLQEIINQGPEILQKKHPRDLT--VHIDRFAYI 527 (843)
Q Consensus 454 ~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~----~l~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~ 527 (843)
...+.-..++|++-. ..+ ++..+.-..+++.+.+ -.++.+.......+..+.++++ ..++.+..+
T Consensus 554 -----feiD~LS~vMe~fVe---~fs-eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~sm 624 (970)
T COG5656 554 -----FEIDPLSMVMESFVE---YFS-EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESM 624 (970)
T ss_pred -----ccchHHHHHHHHHHH---HhH-HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 334444455554322 111 2222222222222222 3333443332111111112211 124555555
Q ss_pred hhccCC-cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 003155 528 FRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ 596 (843)
Q Consensus 528 ~~~~~~-~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~ 596 (843)
+-+++. |.......+.+.|++.-++..- -.+...++|.++... ......+.|..+++.+.+.....
T Consensus 625 iLSlen~p~vLk~le~slypvi~Filkn~--i~dfy~Ea~dildg~-tf~skeI~pimwgi~Ell~~~l~ 691 (970)
T COG5656 625 ILSLENRPLVLKYLEVSLYPVISFILKNE--ISDFYQEALDILDGY-TFMSKEIEPIMWGIFELLLNLLI 691 (970)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhh-hHHHHHhhhhhhHHHHHHHhccc
Confidence 555543 4445556678888888777542 234445555555432 12334455777777777665443
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.43 E-value=0.23 Score=58.00 Aligned_cols=326 Identities=13% Similarity=0.132 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCC--CCcHHHHHHHHHHHHhhHHH
Q 003155 312 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKW 389 (843)
Q Consensus 312 ~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~ 389 (843)
..-.+.+.+.+-+. +.+-..+-.||-+++.++ . .+..+.+++.+.++ .++|.||++++.++.+..+.
T Consensus 76 ~~~l~~n~l~kdl~-----~~n~~~~~lAL~~l~~i~---~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 76 LLILIINSLQKDLN-----SPNPYIRGLALRTLSNIR---T---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp HHHHHHHHHHHHHC-----SSSHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-----CCCHHHHHHHHhhhhhhc---c---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 44445666665542 334444556666666555 2 23344444433221 34799999999999988665
Q ss_pred HhhCCCCchhHHH-HHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHHHHHhhcccCCCCCChhhHHH
Q 003155 390 FDAASSDPSILAS-VLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 466 (843)
Q Consensus 390 l~~~p~~~~~l~~-vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l-~~~~~~li~~~~~~~~~~~~~~l~~~~~~~ 466 (843)
.|+ ..+. +++.+.+.+.++ ..|..+|..++..+ ++.... .+.++.++..+.+.+. ..++..+..
T Consensus 145 ---~p~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~-----~~~~~~q~~ 211 (526)
T PF01602_consen 145 ---DPD---LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLS-----DPDPWLQIK 211 (526)
T ss_dssp ---CHC---CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHT-----CCSHHHHHH
T ss_pred ---CHH---HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhccc-----ccchHHHHH
Confidence 565 5555 577777777543 24888999999888 333322 2556667777666653 234566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHH
Q 003155 467 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWP 546 (843)
Q Consensus 467 l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (843)
+++.+.......+.+... ..+++++...++. ......++++..+...... .+ ..+.+.+
T Consensus 212 il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s--------------~~~~V~~e~~~~i~~l~~~-~~---~~~~~~~ 270 (526)
T PF01602_consen 212 ILRLLRRYAPMEPEDADK---NRIIEPLLNLLQS--------------SSPSVVYEAIRLIIKLSPS-PE---LLQKAIN 270 (526)
T ss_dssp HHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHSSS-HH---HHHHHHH
T ss_pred HHHHHHhcccCChhhhhH---HHHHHHHHHHhhc--------------cccHHHHHHHHHHHHhhcc-hH---HHHhhHH
Confidence 777777655443322211 3333443333331 1123335666665543222 22 5677777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHH
Q 003155 547 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHN 626 (843)
Q Consensus 547 ~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~ 626 (843)
.+...+. ..+..+.-.++..+..+.+...+.+.. .. .....+........=...-.++....... .+..
T Consensus 271 ~L~~lL~--s~~~nvr~~~L~~L~~l~~~~~~~v~~-~~----~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~----n~~~ 339 (526)
T PF01602_consen 271 PLIKLLS--SSDPNVRYIALDSLSQLAQSNPPAVFN-QS----LILFFLLYDDDPSIRKKALDLLYKLANES----NVKE 339 (526)
T ss_dssp HHHHHHT--SSSHHHHHHHHHHHHHHCCHCHHHHGT-HH----HHHHHHHCSSSHHHHHHHHHHHHHH--HH----HHHH
T ss_pred HHHHHhh--cccchhehhHHHHHHHhhcccchhhhh-hh----hhhheecCCCChhHHHHHHHHHhhccccc----chhh
Confidence 7777775 345556556666666665443222221 01 11111221222221111122222223322 2223
Q ss_pred HHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 003155 627 LIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIF 706 (843)
Q Consensus 627 ~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li 706 (843)
++..+... +. -..++|++++...-+..+..++|.. ....++..+.-+..........+...+.+++
T Consensus 340 Il~eL~~~----l~----~~~d~~~~~~~i~~I~~la~~~~~~------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll 405 (526)
T PF01602_consen 340 ILDELLKY----LS----ELSDPDFRRELIKAIGDLAEKFPPD------AEWYVDTLLKLLEISGDYVSNEIINVIRDLL 405 (526)
T ss_dssp HHHHHHHH----HH----HC--HHHHHHHHHHHHHHHHHHGSS------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHH
T ss_pred HHHHHHHH----HH----hccchhhhhhHHHHHHHHHhccCch------HHHHHHHHHHhhhhccccccchHHHHHHHHh
Confidence 33333222 11 1235667888888877777766432 2334444444444444445555556666666
Q ss_pred c
Q 003155 707 D 707 (843)
Q Consensus 707 ~ 707 (843)
.
T Consensus 406 ~ 406 (526)
T PF01602_consen 406 S 406 (526)
T ss_dssp H
T ss_pred h
Confidence 4
No 30
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=1.7 Score=50.56 Aligned_cols=142 Identities=11% Similarity=0.148 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHH-HHHhccCCCHH--HHHHHHHHHHHHHHHh---hhhhcCCHHHHHHH
Q 003155 373 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLS-ILTSGMSTSED--TAAAAALAFRHICDDC---RKKLCGYLDGLYNV 446 (843)
Q Consensus 373 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~-~l~~~l~~~~~--v~~~A~~a~~~lc~~c---~~~l~~~~~~li~~ 446 (843)
..+|+-..+++|+... .+.+. =+.+.+. .+++.++..++ |...|+.+++...+|- ...+.||++.+...
T Consensus 501 RiiRRRVa~ilg~Wvs--vq~~~---e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~ 575 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVS--VQQKL---ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVL 575 (978)
T ss_pred hHHHHHHHHHHhhhhh--eechH---hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHH
Confidence 5788999999996444 11222 2333443 33344544322 6789999999999884 46788999999998
Q ss_pred HHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHH
Q 003155 447 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 526 (843)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 526 (843)
+..++... -..+.+..+..-+|.+|..+. ..+.|....+-+.+..-+...++... -.+..+..+..
T Consensus 576 lfkll~~~----~e~Dtk~~VL~~ls~lI~r~~---------e~I~P~~~~ivq~lp~LWe~s~~e~l-Lr~alL~~L~~ 641 (978)
T KOG1993|consen 576 LFKLLKAV----EECDTKTSVLNLLSTLIERVS---------EHIAPYASTIVQYLPLLWEESEEEPL-LRCALLATLRN 641 (978)
T ss_pred HHHHHHHH----hhhhhHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 88887642 135788889999998887642 22334444444444443332221111 12233667777
Q ss_pred hhhccCC
Q 003155 527 IFRYVNH 533 (843)
Q Consensus 527 ~~~~~~~ 533 (843)
++++++.
T Consensus 642 lV~alg~ 648 (978)
T KOG1993|consen 642 LVNALGA 648 (978)
T ss_pred HHHHhcc
Confidence 7777653
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.01 E-value=7.2 Score=51.61 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=61.9
Q ss_pred CcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCC---CchhHHHHH
Q 003155 333 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS---DPSILASVL 404 (843)
Q Consensus 333 ~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~---~~~~l~~vl 404 (843)
+-...+.++++++.++.+-+.. +...+|.+++.|.+ .++.++..++|+++..+..=.+... ....+++++
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV 536 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL 536 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH
Confidence 4456688899999998765443 24678888888753 3689999999999998752111000 000344444
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 003155 405 SILTSGMSTSEDTAAAAALAFRHICDDC 432 (843)
Q Consensus 405 ~~l~~~l~~~~~v~~~A~~a~~~lc~~c 432 (843)
.++-.+ ++ +.+..|++|+.+++...
T Consensus 537 ~LL~sg--d~-~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 537 WLLKNG--GP-KGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHhCC--CH-HHHHHHHHHHHHHHhcc
Confidence 444332 23 48899999999997543
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.99 E-value=0.05 Score=47.13 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhc
Q 003155 376 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 452 (843)
Q Consensus 376 ~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~ 452 (843)
|+.++..+...+.-+..+.. ++++.+++.++.++.+++ +|+..||.++.++++.++..+.+|++.+++.+-....
T Consensus 3 R~ggli~Laa~ai~l~~~~~--~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS--KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666655555433 589999999999998763 5999999999999999999999999999998888764
No 33
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.93 E-value=3.5 Score=48.76 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 398 SILASVLSILTSGMST---SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 398 ~~l~~vl~~l~~~l~~---~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
+.+...+.++-.++.. |. +-.+|..++.++.+.-. .-.+.+..+++...+.+.- .-+...+...+++.+..
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~-Ll~Ra~~~i~~fs~~~~-~~~~~~~~fl~~~v~~l~~----~~~~~~ki~a~~~~~~~ 518 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPF-LLLRAFLTISKFSSSTV-INPQLLQHFLNATVNALTM----DVPPPVKISAVRAFCGY 518 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHH-HHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhcc----CCCCchhHHHHHHHHhc
Confidence 3556666666666643 34 45588888887765311 1113344444444444432 12334455555544444
Q ss_pred HhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHh
Q 003155 475 ITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI 554 (843)
Q Consensus 475 i~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~ 554 (843)
.+ ...+..+...++..+.++..+..+ ..+...++.|+.+++. + |+-...--.++.|.+..++.+
T Consensus 519 ~~-------~~vl~~~~p~ild~L~qlas~~s~-------evl~llmE~Ls~vv~~-d-pef~as~~skI~P~~i~lF~k 582 (1005)
T KOG2274|consen 519 CK-------VKVLLSLQPMILDGLLQLASKSSD-------EVLVLLMEALSSVVKL-D-PEFAASMESKICPLTINLFLK 582 (1005)
T ss_pred cC-------ceeccccchHHHHHHHHHcccccH-------HHHHHHHHHHHHHhcc-C-hhhhhhhhcchhHHHHHHHHH
Confidence 42 223444555555666665543321 1233446777777653 2 333333445889999999999
Q ss_pred hcCCHHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHHHHHHhhcCC---chHhHHHHHHHHHhCCCcchhHHHHHHH
Q 003155 555 RAWDMRTMESLCRACKYAV---RTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLI 628 (843)
Q Consensus 555 ~~~~~~i~e~~~~~l~~~i---~~~~~~~~p~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~fg~~~~~~~~l~~~l 628 (843)
|.+|+.+.+.+-.+++..+ .++|+...-++|.+++.+...--+.+. +..++++++++.. +..|--...+...|
T Consensus 583 ~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~F 661 (1005)
T KOG2274|consen 583 YSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAF 661 (1005)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHh
Confidence 9999988777777777654 557888777888888776544322221 2345566665543 33232334445555
Q ss_pred HHHHHHH
Q 003155 629 EALFKRT 635 (843)
Q Consensus 629 ~~l~~~~ 635 (843)
.++.+.+
T Consensus 662 paVak~t 668 (1005)
T KOG2274|consen 662 PAVAKIT 668 (1005)
T ss_pred HHhHhhe
Confidence 5555444
No 34
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.92 E-value=0.31 Score=54.75 Aligned_cols=212 Identities=13% Similarity=0.173 Sum_probs=113.6
Q ss_pred hhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCcccccc
Q 003155 433 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 512 (843)
Q Consensus 433 ~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~ 512 (843)
+..+.|++..+++.+..++..+ +..+...++.++-+++..... ...+....++.-+...+..+..+. +++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~-----~s~ENeylMk~iMRvl~~~~e-~~~p~~~~il~~L~~il~~v~kNP-snP--- 86 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKP-----GSAENEYLMKCIMRVLSVLQE-DILPIAVEILQHLTAILKEVSKNP-SNP--- 86 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------STC-HHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHHHHHHTS----H---
T ss_pred HHHhhhhHHHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhCC-CCc---
Confidence 3567799999999998888642 125678899999999988643 334445555555555555555432 211
Q ss_pred CchhhHHHHHHHHHhhhccCCcch--HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 003155 513 HPRDLTVHIDRFAYIFRYVNHPEA--VADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 590 (843)
Q Consensus 513 ~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~ 590 (843)
...+.. -+.++.++|.....+| +..+-+.++|.+..+++.- + ..+.||+=.++..
T Consensus 87 ~FnHyl--FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-----V----------------~EF~PYvfQIla~ 143 (435)
T PF03378_consen 87 RFNHYL--FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD-----V----------------QEFIPYVFQILAQ 143 (435)
T ss_dssp HHHHHH--HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----------------------TTTHHHHHHHHHH
T ss_pred chhhhH--HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH-----H----------------HHHHHHHHHHHHH
Confidence 122333 6889999998654333 3456678899999888642 1 1233333233333
Q ss_pred HHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcc
Q 003155 591 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 670 (843)
Q Consensus 591 l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~ 670 (843)
++.. ++ . +...+...+++..+. . ...-+.+.-+-..-+|+..++++.|..+
T Consensus 144 Lle~---~~----------------~-~~~p~~y~~L~~~Ll-------~--p~lWe~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 144 LLEL---RP----------------S-SPLPDAYKQLFPPLL-------S--PALWERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp HHHH---SS-------------------S--TTTGGGHHHHT-------S--GGGGGSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred HHHc---CC----------------C-CCCcHHHHHHHHHHc-------C--cchhccCCCcCcHHHHHHHHHHhCchhh
Confidence 3322 21 0 001112122222221 1 1223445667788888999999998888
Q ss_pred cCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhcc
Q 003155 671 IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 708 (843)
Q Consensus 671 ~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~ 708 (843)
...+.++.++..--..+...-.+ ..++.++..++..
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKAND--HYGFDLLESIVEN 230 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHH
Confidence 66666666665433333322221 3477778777764
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=6.9 Score=47.93 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcC------CchHhHHHH--HHHHHhCCCcchhHHHHHHHHHHH
Q 003155 561 TMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ------QPCFLYLSS--EVIKIFGSDPSCASYLHNLIEALF 632 (843)
Q Consensus 561 i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~------~~~~L~l~~--~li~~fg~~~~~~~~l~~~l~~l~ 632 (843)
..-.-+.|++++++..+.....+++..+.-++-.++... .-..|..+. +....+|.++ ....+...+..+.
T Consensus 713 ~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Is 791 (1176)
T KOG1248|consen 713 AQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIIS 791 (1176)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHH
Confidence 344678999999998886666666666554433332211 123466666 5555567765 2233333333222
Q ss_pred HHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCC
Q 003155 633 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSC 712 (843)
Q Consensus 633 ~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~ 712 (843)
.. +. .+.+-++..-.-.+..++...- -++..+.+..+++.+...+....++..++|+.|+..++...
T Consensus 792 ag----l~-----gd~~~~~as~Ivai~~il~e~~-~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~--- 858 (1176)
T KOG1248|consen 792 AG----LV-----GDSTRVVASDIVAITHILQEFK-NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF--- 858 (1176)
T ss_pred hh----hc-----ccHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC---
Confidence 11 11 1112222221222333433322 24556678889998888899999999999999999999621
Q ss_pred CchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHH
Q 003155 713 KGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVR 766 (843)
Q Consensus 713 ~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~~ 766 (843)
| ...+..|-+.|+..++. +..+.-+...-.+--+|-.|.++|+.+
T Consensus 859 --p------e~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 859 --P------EECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred --C------HHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 1 13344556666666655 443444445555666777778887743
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.88 Score=51.17 Aligned_cols=216 Identities=14% Similarity=0.225 Sum_probs=125.0
Q ss_pred CCcchhhHHHHHHHHhhccCCCccc-----cchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHH
Q 003155 332 NEWRPAEAALFCIRAISTYVSVVEA-----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLS 405 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~~~-----~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~vl~ 405 (843)
++=.-.|=+.|+++.|+..-+.-.+ ..++.++..+.. +......+++.|+++.+++-- +|..+ .-+..+++
T Consensus 164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~-~~~~~~lRn~tW~LsNlcrgk--~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK-SDKLSMLRNATWTLSNLCRGK--NPSPPFDVVAPILP 240 (514)
T ss_pred CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc-ccchHHHHHHHHHHHHHHcCC--CCCCcHHHHHHHHH
Confidence 3344579999999999876543222 333444444332 112478889999999988633 34332 46788899
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc-----CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 406 ILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 406 ~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~-----~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
.|+..+++. +.|..-||+|+..|.+.....+- .-++.++..+... +...+.-.+.++|.|+..-
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~---------~~~v~~PaLRaiGNIvtG~- 310 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS---------SPKVVTPALRAIGNIVTGS- 310 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC---------CcccccHHHhhccceeecc-
Confidence 998888764 34999999999999965443221 3344444333211 2334566788999977664
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHH-HHHHHHHHHHHhhcCC
Q 003155 480 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWD 558 (843)
Q Consensus 480 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~il~~~~~~ 558 (843)
+++....+. ...+..+..++...... ...++.+..++.|++ + .++-...++. .++|.+..+++.. +
T Consensus 311 d~QTq~vi~---~~~L~~l~~ll~~s~~~---~ikkEAcW~iSNItA---G--~~~qiqaVida~l~p~Li~~l~~~--e 377 (514)
T KOG0166|consen 311 DEQTQVVIN---SGALPVLSNLLSSSPKE---SIKKEACWTISNITA---G--NQEQIQAVIDANLIPVLINLLQTA--E 377 (514)
T ss_pred HHHHHHHHh---cChHHHHHHHhccCcch---hHHHHHHHHHHHhhc---C--CHHHHHHHHHcccHHHHHHHHhcc--c
Confidence 333333332 33344455555533211 112333433444443 2 2222333333 7788888888763 4
Q ss_pred HHHHHHHHHHHHHHH
Q 003155 559 MRTMESLCRACKYAV 573 (843)
Q Consensus 559 ~~i~e~~~~~l~~~i 573 (843)
.++..+++.++.++.
T Consensus 378 f~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLT 392 (514)
T ss_pred hHHHHHHHHHHHhhc
Confidence 566677888887764
No 37
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=7.8 Score=46.56 Aligned_cols=200 Identities=9% Similarity=0.077 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSILTSGMSTSED-TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYR 448 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~vl~~l~~~l~~~~~-v~~~A~~a~~~lc~~-c~~~l~~~~~~li~~~~ 448 (843)
+++-...++.++|..++.+.+..... +.-.-+.+.+++.++.|-. ++++||+.+.++|+. -+
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--------------- 495 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK--------------- 495 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC---------------
Confidence 68999999999999999887643211 2223344556666776642 889999999999842 11
Q ss_pred HhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhh
Q 003155 449 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 528 (843)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 528 (843)
+...+-+++-.+ .+++.... ..+-. ....-.|..++
T Consensus 496 --------------d~~~l~~ale~t------------------------~~~l~~d~-----~lPV~-VeAalALq~fI 531 (1010)
T KOG1991|consen 496 --------------DPNNLSEALELT------------------------HNCLLNDN-----ELPVR-VEAALALQSFI 531 (1010)
T ss_pred --------------ChHHHHHHHHHH------------------------HHHhccCC-----cCchh-hHHHHHHHHHH
Confidence 111111111111 11111100 00000 11122344444
Q ss_pred hccCCcch-HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcC--------
Q 003155 529 RYVNHPEA-VADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ-------- 599 (843)
Q Consensus 529 ~~~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~-------- 599 (843)
+.....++ +.+.+..+|.-+..+..-+. .|.+..++..++..+++.+.|+-+.+++.+...|-+.-
T Consensus 532 ~~~~~~~e~~~~hvp~~mq~lL~L~ne~E-----nd~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~ 606 (1010)
T KOG1991|consen 532 SNQEQADEKVSAHVPPIMQELLKLSNEVE-----NDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDE 606 (1010)
T ss_pred hcchhhhhhHhhhhhHHHHHHHHHHHhcc-----hhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 44332111 11222222222222222222 24566677777888888889988888887777775411
Q ss_pred --------CchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHH
Q 003155 600 --------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRT 635 (843)
Q Consensus 600 --------~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~ 635 (843)
..++|..+++++..+.+.+.+...+...+-.+++.+
T Consensus 607 ~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~i 650 (1010)
T KOG1991|consen 607 SDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFI 650 (1010)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 135788888889888776554444444444444433
No 38
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=5.7 Score=45.95 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhccCCCcchhhhhHHHHHHHHH
Q 003155 181 SMLIVHALLEVASHPEYDIASMTFNFWHSLQV 212 (843)
Q Consensus 181 ~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~ 212 (843)
.++--+++++|....|+.|+..+++..|.+..
T Consensus 334 Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 334 VQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 34557899999999999999999998776653
No 39
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.23 E-value=7.2 Score=44.25 Aligned_cols=278 Identities=14% Similarity=0.231 Sum_probs=146.5
Q ss_pred HHHHHhhccCCCccccchHHHhhhccCC-C-CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--CHHH
Q 003155 342 FCIRAISTYVSVVEAEVMPQVMALLPKL-P-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDT 417 (843)
Q Consensus 342 ~~l~~iae~~~~~~~~~l~~l~~~l~~l-p-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~--~~~v 417 (843)
=|++++--.......++++.+++.+.++ . ..|.+|.-+..+.|..+.-++...+. ..+..+=++|.+.+.. |+ +
T Consensus 585 ~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypE-v 662 (975)
T COG5181 585 PCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPE-V 662 (975)
T ss_pred ecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHH-H
Confidence 3555554444444578888888775432 2 35789999999999999999865442 2445555566677754 45 7
Q ss_pred HHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC----HHHHHHHHHHhhh
Q 003155 418 AAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP----QVDAKKALEMLCL 492 (843)
Q Consensus 418 ~~~A~~a~~~lc~~c~-~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p----~~~~~~~l~~l~~ 492 (843)
-..--.|+..|...-+ ..+.|=+..|+..+..++.+. ..+....-+.-+|.+....| ..+... ++-
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnk-----h~Kv~~nti~lvg~I~~~~peyi~~rEWMR----Icf 733 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNK-----HQKVVANTIALVGTICMNSPEYIGVREWMR----ICF 733 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhh-----hHHHhhhHHHHHHHHHhcCcccCCHHHHHH----HHH
Confidence 7666677766665544 346677777777777776541 12233333444454444433 223322 222
Q ss_pred HHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003155 493 PVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 572 (843)
Q Consensus 493 p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~ 572 (843)
-++.-|.+-. +..+. .+.+.++++.+.++ |+.+ .. .++..... .+--.++|..+.-+
T Consensus 734 eLvd~Lks~n---------KeiRR--~A~~tfG~Is~aiG-Pqdv-------L~---~LlnnLkv-qeRq~RvctsvaI~ 790 (975)
T COG5181 734 ELVDSLKSWN---------KEIRR--NATETFGCISRAIG-PQDV-------LD---ILLNNLKV-QERQQRVCTSVAIS 790 (975)
T ss_pred HHHHHHHHhh---------HHHHH--hhhhhhhhHHhhcC-HHHH-------HH---HHHhcchH-HHHHhhhhhhhhhh
Confidence 2222222211 11121 12466777777665 3432 22 22222211 12224566665433
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhhcCC---chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccccc-CCcC
Q 003155 573 VRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEE-FTSR 648 (843)
Q Consensus 573 i~~~~~~~~p~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~-~~~~ 648 (843)
..++...|| .++..+.+.|++... ..+|...+-+....|+. ..+.+- ....+|. +. .+.+
T Consensus 791 --iVae~cgpf--sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~--s~dYvy--------~itPlle--DAltDrD 854 (975)
T COG5181 791 --IVAEYCGPF--SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA--SLDYVY--------SITPLLE--DALTDRD 854 (975)
T ss_pred --hhHhhcCch--hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH--HHHHHH--------HhhHHHH--hhhcccc
Confidence 345555554 345567778877553 34555555444444442 111111 1222332 11 2456
Q ss_pred CchHHHHHHHHHHHHhhCCCc
Q 003155 649 PDVADDCFLLASRCIRYCPQL 669 (843)
Q Consensus 649 pD~~~~~f~l~~~~~~~~p~~ 669 (843)
|=.++.--+++..+.-.||+.
T Consensus 855 ~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 855 PVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred hHHHHHHHHHHHHHhcCCCCc
Confidence 667777777777777777764
No 40
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.18 Score=52.37 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=73.1
Q ss_pred HHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhh
Q 003155 318 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA 392 (843)
Q Consensus 318 ~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~ 392 (843)
+.+.+.+. +.+-.-+|-++|++|.||..-..- ....+.-++..+.+-..|..+.+++.|+++.+++ .+
T Consensus 160 PlfiqlL~-----s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR--Gk 232 (526)
T COG5064 160 PLFIQLLS-----STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR--GK 232 (526)
T ss_pred HHHHHHHc-----CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC--CC
Confidence 34555542 344456799999999998753322 2345556666665444488888999999998876 44
Q ss_pred CCCCc-hhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH
Q 003155 393 ASSDP-SILASVLSILTSGMS--TSEDTAAAAALAFRHICDD 431 (843)
Q Consensus 393 ~p~~~-~~l~~vl~~l~~~l~--~~~~v~~~A~~a~~~lc~~ 431 (843)
+|... ..+...+++|++-+. +++ +..-||+|+..|.+.
T Consensus 233 nP~P~w~~isqalpiL~KLiys~D~e-vlvDA~WAiSYlsDg 273 (526)
T COG5064 233 NPPPDWSNISQALPILAKLIYSRDPE-VLVDACWAISYLSDG 273 (526)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHhccC
Confidence 55422 467788888877653 455 899999999999864
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=95.03 E-value=11 Score=45.39 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHHHhhHHHHhhCCCCchhHH--HHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhc---CCHHHH
Q 003155 371 QQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLC---GYLDGL 443 (843)
Q Consensus 371 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~--~vl~~l~~~l~~--~~~v~~~A~~a~~~lc~~c~~~l~---~~~~~l 443 (843)
.||.||+++..++.+..+ .+|+ ..+ ..++.+...+.+ +. |...|..+|..+++.+...+. +++..+
T Consensus 152 ~~pYVRKtAalai~Kly~---~~pe---lv~~~~~~~~L~~LL~D~dp~-Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L 224 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFH---DDMQ---LFYQQDFKKDLVELLNDNNPV-VASNAAAIVCEVNDYGSEKIESSNEWVNRL 224 (746)
T ss_pred CCHHHHHHHHHHHHHHHh---hCcc---cccccchHHHHHHHhcCCCcc-HHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 489999999999998744 3443 111 223333333443 34 999999999999987754332 222222
Q ss_pred HHHHHHhhcccCCCCCChhhHHHHHHHHHH
Q 003155 444 YNVYRTAVNGEGSLKVSAEDSLHLVEALSM 473 (843)
Q Consensus 444 i~~~~~~~~~~~~~~l~~~~~~~l~eaig~ 473 (843)
+ ..+. ..+...+..+++.+..
T Consensus 225 l----~~L~-----e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 225 V----YHLP-----ECNEWGQLYILELLAA 245 (746)
T ss_pred H----HHhh-----cCChHHHHHHHHHHHh
Confidence 2 2222 2346678888888754
No 42
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.99 E-value=8 Score=43.56 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=93.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCCcc--ccchHHHhhhccCC--CC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKL--PQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 405 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~--~~~l~~l~~~l~~l--p~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~ 405 (843)
..++...-+++-++.++.-....++ ++++..+...+.+. +. .+..-....|+.-.. -++.||. -...+.
T Consensus 201 ~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL--v~R~~~~----~~~~~~ 274 (415)
T PF12460_consen 201 SEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL--VMRGHPL----ATELLD 274 (415)
T ss_pred CCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH--HHcCCch----HHHHHH
Confidence 3446667888889988888765543 23444444444111 11 133333333443221 2345664 556666
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhhhc-------------CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 003155 406 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLC-------------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 472 (843)
Q Consensus 406 ~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~-------------~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig 472 (843)
.++..+.+++ +...||.+|.-|..+....+. -++..++..+.+.... .+.+.+...+.|++
T Consensus 275 ~L~~lL~~~~-~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-----~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 275 KLLELLSSPE-LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-----ADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHhCChh-hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-----cChhhHHHHHHHHH
Confidence 7777777776 999999999999977443322 1223333333332221 12346778899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhHHHHHH
Q 003155 473 MVITELPQVDAKKALEMLCLPVVTPL 498 (843)
Q Consensus 473 ~vi~~~p~~~~~~~l~~l~~p~~~~l 498 (843)
+++..+|.+-..+.+..++.-+++.+
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL 374 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSL 374 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHh
Confidence 99999998877778888777666555
No 43
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.90 E-value=8 Score=43.87 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=146.4
Q ss_pred chhHHHHHhhcCC--CcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHH
Q 003155 87 HPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFA 164 (843)
Q Consensus 87 ~~ll~~~~~~L~~--~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~ 164 (843)
.+++..++..|++ |.+|+.|++....+...-..- + + .+.+.. +..+ |.+.+ +++++|..-.+.+.++
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c--~---e-~~~l~k-lg~i--LyE~l--ge~ypEvLgsil~Ai~ 671 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC--G---E-TKELAK-LGNI--LYENL--GEDYPEVLGSILKAIC 671 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc--c---h-HHHHHH-HhHH--HHHhc--CcccHHHHHHHHHHHH
Confidence 3455556666664 577888887766554221100 0 1 111111 1111 12222 2445555444444333
Q ss_pred HHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHH
Q 003155 165 DMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY 244 (843)
Q Consensus 165 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 244 (843)
++-..+- +..-.+...++++-+.-+..+..+.|...++.|--..+... +.|.+ ...+-.+-
T Consensus 672 ~I~sv~~--~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~---peyi~--------------~rEWMRIc 732 (975)
T COG5181 672 SIYSVHR--FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNS---PEYIG--------------VREWMRIC 732 (975)
T ss_pred HHhhhhc--ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcC---cccCC--------------HHHHHHHH
Confidence 3322221 11101124566777777777777778788888766665422 22221 11222333
Q ss_pred HHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHH
Q 003155 245 ESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGV 324 (843)
Q Consensus 245 ~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l 324 (843)
..|++.+. .|. .+-|+. +-++|-.+...+||++++..+++.|+-.
T Consensus 733 feLvd~Lk----------s~n-------KeiRR~-----------------A~~tfG~Is~aiGPqdvL~~LlnnLkvq- 777 (975)
T COG5181 733 FELVDSLK----------SWN-------KEIRRN-----------------ATETFGCISRAIGPQDVLDILLNNLKVQ- 777 (975)
T ss_pred HHHHHHHH----------Hhh-------HHHHHh-----------------hhhhhhhHHhhcCHHHHHHHHHhcchHH-
Confidence 34443332 232 234555 7789999999999999999988877642
Q ss_pred hhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHH
Q 003155 325 ACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 404 (843)
Q Consensus 325 ~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl 404 (843)
+-|.+=..-.+++-+||.+.+ -+++|.++.--.. | +.-|+.-.+..+.-+-+++.+... .|.-.+.
T Consensus 778 --------eRq~RvctsvaI~iVae~cgp--fsVlP~lm~dY~T-P-e~nVQnGvLkam~fmFeyig~~s~--dYvy~it 843 (975)
T COG5181 778 --------ERQQRVCTSVAISIVAEYCGP--FSVLPTLMSDYET-P-EANVQNGVLKAMCFMFEYIGQASL--DYVYSIT 843 (975)
T ss_pred --------HHHhhhhhhhhhhhhHhhcCc--hhhHHHHHhcccC-c-hhHHHHhHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 122233445578888888754 2445555543321 2 345555555555555555543322 3777888
Q ss_pred HHHHhccCCCH-HHHHHHHHHHHHHHHHhhhh
Q 003155 405 SILTSGMSTSE-DTAAAAALAFRHICDDCRKK 435 (843)
Q Consensus 405 ~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~ 435 (843)
+.+-.+|.+.+ -.+..|+..++.|+-.|...
T Consensus 844 PlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 844 PLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 88888886432 15678899999999888753
No 44
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.80 E-value=10 Score=43.97 Aligned_cols=353 Identities=14% Similarity=0.105 Sum_probs=177.7
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCC--CCcH
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQP 373 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~l--p~~~ 373 (843)
.+-++.-+...+|-.++ .+.|.... . +..+|+-+..++-++..|+.-+.-.--+++..++..+... ..|.
T Consensus 496 tarafavvasalgip~l----lpfLkavc-~---SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~q 567 (1172)
T KOG0213|consen 496 TARAFAVVASALGIPAL----LPFLKAVC-G---SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQ 567 (1172)
T ss_pred HHHHHHHHHHHhCcHHH----HHHHHHHh-c---cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccch
Confidence 55566666667775544 33444433 2 2569999999999999998765444345566667666542 3478
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHhh
Q 003155 374 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAV 451 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~-~li~~~~~~~ 451 (843)
.||-.+...++..++-. .|-...-+..++.-|-++++... +.-.+=-+|+-.+|-..+.+-..|.. .++-.+..-.
T Consensus 568 kVR~itAlalsalaeaa--~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf 645 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAA--TPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF 645 (1172)
T ss_pred hhhhHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh
Confidence 88888888888776633 44333456777777777775443 23444455566666555555444433 1222222211
Q ss_pred cccCCCCCChh----hHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHh
Q 003155 452 NGEGSLKVSAE----DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 527 (843)
Q Consensus 452 ~~~~~~~l~~~----~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 527 (843)
+ .+++ ..+++++-++..-+.-|. ....+.+-.-+..-|..-+... .+...+..+.-..+
T Consensus 646 ~------sPDeemkkivLKVv~qcc~t~Gv~~~---y~r~dilp~ff~~fw~rrmA~d--------rr~ykqlv~ttv~i 708 (1172)
T KOG0213|consen 646 G------SPDEEMKKIVLKVVKQCCATDGVEPA---YIRFDILPEFFFSFWGRRMALD--------RRNYKQLVDTTVEI 708 (1172)
T ss_pred C------CChHHHHHHHHHHHHHHhcccCCCHH---HHhhhhhHHHHhhhhhhhhhcc--------ccchhhHHHHHHHH
Confidence 1 1222 223344444433333221 2122111111111122211111 01111112222222
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHhhhh-hh-hhhHHHHHHHHHHHHhh--c
Q 003155 528 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR-----TMESLCRACKYAVRTSKR-FM-GITIGAILEEIQGLYQQ--H 598 (843)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~-----i~e~~~~~l~~~i~~~~~-~~-~p~l~~l~~~l~~~~~~--~ 598 (843)
...++. -+++..++..+.++++ +++.+-+++. .+|. .+ ......+++-++-+|+. +
T Consensus 709 a~KvG~-----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~----~lg~~diderleE~lidgil~Afqeqtt 773 (1172)
T KOG0213|consen 709 AAKVGS-----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVG----RLGAADIDERLEERLIDGILYAFQEQTT 773 (1172)
T ss_pred HHHhCc-----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHh----ccccccccHHHHHHHHHHHHHHHHhccc
Confidence 222222 1334444444443333 3333333322 2221 11 11223455555666654 3
Q ss_pred CCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHh---hCCCcccCcCC
Q 003155 599 QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR---YCPQLFIPSSV 675 (843)
Q Consensus 599 ~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~---~~p~~~~~s~~ 675 (843)
..+..|...+.++..+|.. +.+.+.+++ +.++..|++ ..|++++--..+++++.. .|-..
T Consensus 774 ~d~vml~gfg~V~~~lg~r--~kpylpqi~----stiL~rLnn-----ksa~vRqqaadlis~la~Vlktc~ee------ 836 (1172)
T KOG0213|consen 774 EDSVMLLGFGTVVNALGGR--VKPYLPQIC----STILWRLNN-----KSAKVRQQAADLISSLAKVLKTCGEE------ 836 (1172)
T ss_pred chhhhhhhHHHHHHHHhhc--cccchHHHH----HHHHHHhcC-----CChhHHHHHHHHHHHHHHHHHhccHH------
Confidence 4455667788888889875 555655444 445666663 347888877777776653 34321
Q ss_pred cHHHHHHH---HHhccCCChhHHHHHHHHHHHhhcc
Q 003155 676 FPSLVDCS---MIGITVQHREASNSILTFLSDIFDL 708 (843)
Q Consensus 676 l~~i~~~~---~~~l~~~e~~~~~s~~~fl~~li~~ 708 (843)
..+=.++ ..-+.-..+++.-+.+.-+..+.+.
T Consensus 837 -~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nv 871 (1172)
T KOG0213|consen 837 -KLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNV 871 (1172)
T ss_pred -HHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 1111222 2345566777777777777777663
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.51 E-value=0.076 Score=46.02 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=65.2
Q ss_pred hhHHHHHHHHhhccCCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 003155 337 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 414 (843)
Q Consensus 337 ~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~ 414 (843)
+-++|.++.+++.++...-..+++.+++.+.. +. .+++||+.+|+.+...++.....- ..++..++..+++.+.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~--l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI--LPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC
Confidence 45789999999999988877888888887644 44 479999999999999998876421 125677777787777776
Q ss_pred HH-HHHHHHHHHHHH
Q 003155 415 ED-TAAAAALAFRHI 428 (843)
Q Consensus 415 ~~-v~~~A~~a~~~l 428 (843)
+. |+. ||..+-++
T Consensus 81 d~~Vr~-~a~~Ld~l 94 (97)
T PF12755_consen 81 DENVRS-AAELLDRL 94 (97)
T ss_pred chhHHH-HHHHHHHH
Confidence 42 544 44555444
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.50 E-value=0.074 Score=47.88 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCCcc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 404 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~-----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~vl 404 (843)
+.+|..++.++++++.++...+... ...++.+++.+.. .++.++..+++++++++..-...+. .+. ..++
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l 93 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKL--IVLEAGGV 93 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHH--HHHHCCCh
Confidence 4569999999999999998753332 3556666665543 3789999999999999764322111 111 1245
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHH
Q 003155 405 SILTSGMSTS-EDTAAAAALAFRHICD 430 (843)
Q Consensus 405 ~~l~~~l~~~-~~v~~~A~~a~~~lc~ 430 (843)
+.+.+.++.+ .+++..|+.+|.++|+
T Consensus 94 ~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5555555543 3489999999999874
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.38 E-value=13 Score=43.10 Aligned_cols=131 Identities=16% Similarity=0.255 Sum_probs=81.2
Q ss_pred CcchhhHHHHHHHHhhccCCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhHHHHhhCCCCc-hhH--HHHHHHH
Q 003155 333 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDP-SIL--ASVLSIL 407 (843)
Q Consensus 333 ~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l--~~vl~~l 407 (843)
+=..++.++.++..+.+...... ..++..+.|.. +. +++.||.-+++.|+++.+ |++.. +.+ ..++..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~----~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR----HSEGAAQLLVDNELLPLI 124 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CCHHHHHHhcCccHHHHH
Confidence 44567888888888877665433 24554444421 22 378999999999999753 22110 000 2344555
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHH-----HHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 408 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-----YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 408 ~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~l-----i~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
...+.+++ .|+..|+.++.+++.. .. .++.+ +..+.++... -+...|.++++.+..+.+..+
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~-~~----~~~~l~~~~~~~~L~~l~~~-----~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASH-PE----GLEQLFDSNLLSKLKSLMSQ-----SSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCC-ch----hHHHHhCcchHHHHHHHHhc-----cCHHHHHHHHHHHHHHHhcCH
Confidence 56666553 4999999999999853 21 22222 5555565532 145689999999999877653
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.35 E-value=0.015 Score=44.54 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=41.7
Q ss_pred cchhhHHHHHHHHhhccCCCccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhh
Q 003155 334 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAY 386 (843)
Q Consensus 334 W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y 386 (843)
|+.+++++++++.+++.......++++++++.|.. + .+++.||.++++.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 77889999999998888776666777777776643 2 24679999999999963
No 49
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.32 E-value=2.4 Score=45.76 Aligned_cols=175 Identities=10% Similarity=0.126 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcccc---cchhHHHHH-hhc-CCCcchHH-HHHHHHHHHhhhccCCCCCccCcHhHHH
Q 003155 60 ELKEQVLEAFASWLRLKHRIPGSVLA---SHPLVLTAL-SSL-HSEILSEA-SVNVISELIHYSAAGSSGGATVNMPLIQ 133 (843)
Q Consensus 60 ~~~~~~L~cl~sWi~~~~~i~~~~l~---~~~ll~~~~-~~L-~~~~~~~~-A~~~l~eii~~~~~~~~~~~~~~~~li~ 133 (843)
.++...|+-+..|++.. -+.+.+. -.|+++.++ .+- ..|+.|+. ...++..++.+-...... ....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~--~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~---~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKA--EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP---QVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT---S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC---CHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh---hHHHHHH
Confidence 37788999999999953 1222221 144444333 222 24666655 566777777665431111 2223344
Q ss_pred HHHHHHHhhHHHHhhccC-CHHHHHHHHHHHHHHhhHHHHHHHcCC-chHHHHHHHHHhhccCCCcchhhhhHHHHHHHH
Q 003155 134 VIVPQIMSLKAHLTDSSK-DEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQ 211 (843)
Q Consensus 134 ~l~~~~~~l~~~l~~~~~-d~~~~~~l~~l~~~~~e~~~~~l~~~~-~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~ 211 (843)
.++... .+.+.++.. =+|....+.+++-.+.+.+...+..=+ +.+..+++.++....|++.+|++.++.....+.
T Consensus 117 ~vf~~T---l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 117 AVFECT---LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHH---HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 444322 233333322 368888999999999999888777643 457789999999999999999999999988888
Q ss_pred HHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 003155 212 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQ 256 (843)
Q Consensus 212 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~ 256 (843)
+...... .+...+.|+.+|..++..++.-+.
T Consensus 194 ~~~~~~~--------------~~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 194 NNVSKTN--------------PEFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHH-S--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764310 123446677777777777666554
No 50
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.18 E-value=3.6 Score=42.92 Aligned_cols=235 Identities=13% Similarity=0.159 Sum_probs=125.0
Q ss_pred CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 371 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 371 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
+.+.+|.-++.+++..-+-+....-..+-...++.|+.+.+.+.. ....|..++..+. .++..-......+++.+.+-
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV-KMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHh
Confidence 367888888888776655443221111245677778888887665 5556688888887 33332223355555555443
Q ss_pred hcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhc
Q 003155 451 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 530 (843)
Q Consensus 451 ~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 530 (843)
.. .......+|..+|+=+-.+++.- ...+..+-...+..+-+.++.. .++|-+...-+.+..+.+.
T Consensus 89 ~~---~q~~~q~~R~~~~~ll~~l~~~~-----~~~l~~~~~~fv~~~i~~~~gE------kDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 89 VD---VQSLPQSTRYAVYQLLDSLLENH-----REALQSMGDDFVYGFIQLIDGE------KDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred CC---hhhhhHHHHHHHHHHHHHHHHHh-----HHHHHhchhHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHHh
Confidence 32 12456788999998888887653 2223444445555555555432 2455555555556665555
Q ss_pred cCCcchHHHHHHHHHHHHHHHH----HhhcCCH--HHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhhcCCchH
Q 003155 531 VNHPEAVADAIQRLWPIFKAIF----DIRAWDM--RTMESLCRACKYAVRTSKRFMGI-TIGAILEEIQGLYQQHQQPCF 603 (843)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~il----~~~~~~~--~i~e~~~~~l~~~i~~~~~~~~p-~l~~l~~~l~~~~~~~~~~~~ 603 (843)
... .+..+++..++..-. ...++|+ ...|..-..++.++.+- +.+.| .+|-+++.+.+...... ...
T Consensus 155 ~~~----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~fa~~~~p~LleKL~s~~~~~K-~D~ 228 (262)
T PF14500_consen 155 FDI----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PLFAPFAFPLLLEKLDSTSPSVK-LDS 228 (262)
T ss_pred ccc----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-HhhHHHHHHHHHHHHcCCCcHHH-HHH
Confidence 442 123344333332211 1223343 12455555555554322 22333 24556666654433221 356
Q ss_pred hHHHHHHHHHhCCCcchhHHHHHHH
Q 003155 604 LYLSSEVIKIFGSDPSCASYLHNLI 628 (843)
Q Consensus 604 L~l~~~li~~fg~~~~~~~~l~~~l 628 (843)
|.++..++..||.+ .+.+....+.
T Consensus 229 L~tL~~c~~~y~~~-~~~~~~~~iw 252 (262)
T PF14500_consen 229 LQTLKACIENYGAD-SLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHCCHH-HHHHHHHHHH
Confidence 77788888888864 2344444333
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.04 E-value=15 Score=42.56 Aligned_cols=340 Identities=16% Similarity=0.133 Sum_probs=170.8
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCC-----ccccchHHHhhhccCCC
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV-----VEAEVMPQVMALLPKLP 370 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~-----~~~~~l~~l~~~l~~lp 370 (843)
+.+++..|..-..++...+...+.+...+. +++=.-++-++..++.+++.-.. .+++.++.++..+..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-- 130 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-- 130 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC--
Confidence 445666666555556666667777777663 44445667888888877654322 124555555555532
Q ss_pred CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH-----HHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhcCCHH--H
Q 003155 371 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-----LSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLD--G 442 (843)
Q Consensus 371 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~v-----l~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~~~l~~~~~--~ 442 (843)
++..|...++.++...+. ++. .+..+ +..+.+.+.+ ...++.++...+.+++......+ .+.. .
T Consensus 131 ~d~~Va~~A~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sg 202 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLAS----HPE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSG 202 (503)
T ss_pred CcHHHHHHHHHHHHHHhC----Cch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhcc
Confidence 367899999999988764 443 33333 4555555555 33377888888888886544333 2222 2
Q ss_pred HHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchh--hHHH
Q 003155 443 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD--LTVH 520 (843)
Q Consensus 443 li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 520 (843)
+++.+...+.++ +.-.++.++|-++.+... | .-..++.+ ..++.++.+.+.....++ . ... +...
T Consensus 203 ll~~ll~eL~~d-----DiLvqlnalell~~La~~-~--~g~~yL~~--~gi~~~L~~~l~~~~~dp-~--~~~~~l~g~ 269 (503)
T PF10508_consen 203 LLDLLLKELDSD-----DILVQLNALELLSELAET-P--HGLQYLEQ--QGIFDKLSNLLQDSEEDP-R--LSSLLLPGR 269 (503)
T ss_pred HHHHHHHHhcCc-----cHHHHHHHHHHHHHHHcC-h--hHHHHHHh--CCHHHHHHHHHhccccCC-c--ccchhhhhH
Confidence 445444444321 234678888888888873 2 22344433 345666666665543322 0 111 1112
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hhhhhh-----hhHHHHHHHHHHH
Q 003155 521 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT-SKRFMG-----ITIGAILEEIQGL 594 (843)
Q Consensus 521 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~-~~~~~~-----p~l~~l~~~l~~~ 594 (843)
+...+.++.. .|..+...+..+...+...+. ..|....+.+...++.+-.+ -|..+. +-+..++..+...
T Consensus 270 ~~f~g~la~~--~~~~v~~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 270 MKFFGNLARV--SPQEVLELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 3344444432 222222222233332222221 24566666666666654322 222222 2223333333333
Q ss_pred HhhcCC---chHhHHHHHHHHHhCCCc--chhHHHHHHHHHHHHHHHH-hhcccccC-CcCCchHHHHHHHHHHHHhhCC
Q 003155 595 YQQHQQ---PCFLYLSSEVIKIFGSDP--SCASYLHNLIEALFKRTTC-LLTSIEEF-TSRPDVADDCFLLASRCIRYCP 667 (843)
Q Consensus 595 ~~~~~~---~~~L~l~~~li~~fg~~~--~~~~~l~~~l~~l~~~~~~-~l~~~~~~-~~~pD~~~~~f~l~~~~~~~~p 667 (843)
....+. ...|..++.++......+ .+.......+..+.+.... ++- +-. ...||++-+-|+++..+..+-|
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~--~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLM--SLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHH--HHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 333332 234555555553322211 1112223333332221111 111 111 2458999999999998887755
Q ss_pred Cc
Q 003155 668 QL 669 (843)
Q Consensus 668 ~~ 669 (843)
..
T Consensus 424 g~ 425 (503)
T PF10508_consen 424 GQ 425 (503)
T ss_pred HH
Confidence 43
No 52
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.02 E-value=13 Score=41.86 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhh
Q 003155 650 DVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRG 729 (843)
Q Consensus 650 D~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g 729 (843)
+....|+.-+..++++.|..++.+ .++.++...+.++..++.+...++++.+..++.- .+ +++.+|-
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~-----~~-------~~i~~hl 404 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE-----AP-------ELISEHL 404 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-----CH-------HHHHHHH
Confidence 377888888899999999765443 4788999999999999999999999999999952 11 3344566
Q ss_pred HHHHHHHHH
Q 003155 730 ASITRILIA 738 (843)
Q Consensus 730 ~~lv~~ll~ 738 (843)
..+|..++.
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 666665543
No 53
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=19 Score=42.51 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHhhHHHHhhC-----CCCchhHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHhhhhhcCCHHHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAA-----SSDPSILASVLSILTSGMS---TSEDTAAAAALAFRHICDDCRKKLCGYLDGL 443 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~-----p~~~~~l~~vl~~l~~~l~---~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~l 443 (843)
++.+.+.+.|+||.|.+++-.. |.. .--..++.++...+. ....+...|-.|+.||....... .+-+..+
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~-vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~~ri~~l 556 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIK-VTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-SERIKQL 556 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCc-CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-HHHHHHH
Confidence 4566888999999999988652 110 011233333333331 12337788999999987653332 3334444
Q ss_pred HH
Q 003155 444 YN 445 (843)
Q Consensus 444 i~ 445 (843)
|.
T Consensus 557 I~ 558 (866)
T KOG1062|consen 557 IS 558 (866)
T ss_pred HH
Confidence 43
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=2.2 Score=48.04 Aligned_cols=215 Identities=12% Similarity=0.135 Sum_probs=116.6
Q ss_pred hhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHHHHHH
Q 003155 336 PAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSIL 407 (843)
Q Consensus 336 ~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~vl~~l 407 (843)
+.|| -|++..||.+-++. ++..+|.++..+.+ +|..|+..+.|.+|..+..=....+. .-.+++++..+
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s--~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l 203 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS--PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL 203 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHHHHHHhcC--CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh
Confidence 4555 68999999886655 34556766666543 38899999999999875422111110 00344444444
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHH
Q 003155 408 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGY---LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 484 (843)
Q Consensus 408 ~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~---~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~ 484 (843)
..... -.....|.+++.+||+... -.|. +..++..+..++.. .+.+......-|++++...- ++...
T Consensus 204 ~~~~~--~~~lRn~tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~-----~D~~Vl~Da~WAlsyLsdg~-ne~iq 273 (514)
T KOG0166|consen 204 NKSDK--LSMLRNATWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHS-----TDEEVLTDACWALSYLTDGS-NEKIQ 273 (514)
T ss_pred ccccc--hHHHHHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcCC-hHHHH
Confidence 32221 1267889999999998654 2343 34455555555532 23555566677777776553 33322
Q ss_pred HHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 003155 485 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 564 (843)
Q Consensus 485 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~ 564 (843)
..+. .-+..++-.++..... +-....+..++.++.+-+. +.-...-....|.+..++..-. ...+..+
T Consensus 274 ~vi~---~gvv~~LV~lL~~~~~-------~v~~PaLRaiGNIvtG~d~-QTq~vi~~~~L~~l~~ll~~s~-~~~ikkE 341 (514)
T KOG0166|consen 274 MVID---AGVVPRLVDLLGHSSP-------KVVTPALRAIGNIVTGSDE-QTQVVINSGALPVLSNLLSSSP-KESIKKE 341 (514)
T ss_pred HHHH---ccchHHHHHHHcCCCc-------ccccHHHhhccceeeccHH-HHHHHHhcChHHHHHHHhccCc-chhHHHH
Confidence 2222 2233445555543321 1122336666665543211 1001112255666666665322 1237788
Q ss_pred HHHHHHHHHHh
Q 003155 565 LCRACKYAVRT 575 (843)
Q Consensus 565 ~~~~l~~~i~~ 575 (843)
+|..+..+...
T Consensus 342 AcW~iSNItAG 352 (514)
T KOG0166|consen 342 ACWTISNITAG 352 (514)
T ss_pred HHHHHHHhhcC
Confidence 99999987543
No 55
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.72 E-value=0.11 Score=39.80 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHH
Q 003155 373 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHI 428 (843)
Q Consensus 373 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~l 428 (843)
|.||..+++.+|+.+.-....-. .+++.+++.|...+.++ .+|+..|++|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~--~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ--PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH--HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 68999999999975421111111 37888999999888654 35999999998754
No 56
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.68 E-value=3.9 Score=42.89 Aligned_cols=236 Identities=11% Similarity=0.155 Sum_probs=124.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCC---chhHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILAS 402 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~ 402 (843)
..+--++|| -|++..|+.+-... +...+|-++++|.+ ....|+..+.|.+|..+..-....+. --.|.+
T Consensus 127 q~~mlqfEA-aWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s--~~~~V~eQavWALGNiAGDS~~~RD~vL~~galep 203 (526)
T COG5064 127 QRDMLQFEA-AWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS--TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEP 203 (526)
T ss_pred chhHHHHHH-HHHHhhhccCcccceEEEEeCCchHHHHHHHcC--chHHHHHHHHHHhccccCCchhHHHHHHhcCchHH
Confidence 455667787 48999999987655 35678888888764 25689999999999875322111100 015788
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH---HHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 403 VLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVY---RTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 403 vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~---~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
+++.+.+.-.+-. ..+.|.+++.++|.. +.--|..+.+-+.+ ..++- ..+.+.....+=|++++... |
T Consensus 204 lL~ll~ss~~~is-mlRn~TWtLSNlcRG--knP~P~w~~isqalpiL~KLiy-----s~D~evlvDA~WAiSYlsDg-~ 274 (526)
T COG5064 204 LLGLLLSSAIHIS-MLRNATWTLSNLCRG--KNPPPDWSNISQALPILAKLIY-----SRDPEVLVDACWAISYLSDG-P 274 (526)
T ss_pred HHHHHHhccchHH-HHHHhHHHHHHhhCC--CCCCCchHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHhccC-c
Confidence 8888864433323 778999999999874 33345544444333 33332 12345555566666666543 3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC-cchHHHHHHHHHHHHHHHHHhhcCC
Q 003155 480 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWD 558 (843)
Q Consensus 480 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~il~~~~~~ 558 (843)
.+.....+..= +..+|-.++..... +-....+..++.++.+-+. .+.... --+.+.+..++..-.
T Consensus 275 ~E~i~avld~g---~~~RLvElLs~~sa-------~iqtPalR~vGNIVTG~D~QTqviI~--~G~L~a~~~lLs~~k-- 340 (526)
T COG5064 275 NEKIQAVLDVG---IPGRLVELLSHESA-------KIQTPALRSVGNIVTGSDDQTQVIIN--CGALKAFRSLLSSPK-- 340 (526)
T ss_pred HHHHHHHHhcC---CcHHHHHHhcCccc-------cccCHHHHhhcCeeecCccceehhee--cccHHHHHHHhcChh--
Confidence 44433333322 22344444443221 1112225556666544221 011000 012233333343322
Q ss_pred HHHHHHHHHHHHHHHHhhhhh----h-hhhHHHHHHHHH
Q 003155 559 MRTMESLCRACKYAVRTSKRF----M-GITIGAILEEIQ 592 (843)
Q Consensus 559 ~~i~e~~~~~l~~~i~~~~~~----~-~p~l~~l~~~l~ 592 (843)
..+...+|..+..+--.-.++ + ..++|+++..+.
T Consensus 341 e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls 379 (526)
T COG5064 341 ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS 379 (526)
T ss_pred hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH
Confidence 357778888877653211111 1 234566666543
No 57
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=92.60 E-value=23 Score=40.56 Aligned_cols=237 Identities=16% Similarity=0.095 Sum_probs=128.3
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhcc-CCCC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 408 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~-~lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~ 408 (843)
..+-...|++++++.+..+.+...-.+++..+++.+. ++.+ .+.||.++...+-..-.-+..+.- +.++++.+.-+.
T Consensus 186 k~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~ 264 (569)
T KOG1242|consen 186 KKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLL 264 (569)
T ss_pred cchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHH
Confidence 4556678899999998888887666666666666543 3432 478888888887666554433311 135666665444
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003155 409 SGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 488 (843)
Q Consensus 409 ~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~ 488 (843)
..-= + -..++...+..+.......+.-.++.++..+..++- +-..+.|..-++++-.+-+.....+...++.
T Consensus 265 ~~kW--r-tK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-----DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 265 EAKW--R-TKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-----DTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred HHhh--h-hHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-----cCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3310 1 234455555544443344566678888888877774 2345666666666655555544433322222
Q ss_pred H----hhhHHHHHHHHHHhcCCcc--------c----------------cccCchhhHHHHHHHHHhhhccCCcchHHHH
Q 003155 489 M----LCLPVVTPLQEIINQGPEI--------L----------------QKKHPRDLTVHIDRFAYIFRYVNHPEAVADA 540 (843)
Q Consensus 489 ~----l~~p~~~~l~~~~~~~~~~--------~----------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 540 (843)
. +-.|. .....++..-... + +....+..+..++.+..++ ..|..+.++
T Consensus 337 ~Lld~l~dp~-~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf 412 (569)
T KOG1242|consen 337 TLLDALADPS-CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF 412 (569)
T ss_pred HHHHHhcCcc-cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence 2 21221 1111111110000 0 0000011111122222222 234456678
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhh
Q 003155 541 IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGI 582 (843)
Q Consensus 541 ~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p 582 (843)
+.+++|-+..++..- .+++++-.-+++...++..|....+
T Consensus 413 l~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~ 452 (569)
T KOG1242|consen 413 LPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFD 452 (569)
T ss_pred HHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhccc
Confidence 888888888877543 6888888888888888877765543
No 58
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.43 E-value=1.2 Score=45.57 Aligned_cols=137 Identities=14% Similarity=0.222 Sum_probs=84.1
Q ss_pred CCCcchhhHHHHHHHHhhccC-CCccccchHHHh----hhc-cCCCC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYV-SVVEAEVMPQVM----ALL-PKLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASV 403 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~-~~~~~~~l~~l~----~~l-~~lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~v 403 (843)
+.+|..+..++--+.++..+- .....+.+...+ ..+ ..+.+ ...|..++|.+++.++.-+..+-+ .+...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHH
Confidence 688999999999999987765 211111111222 222 22332 468999999999999998887643 478888
Q ss_pred HHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHH-HHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 404 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 404 l~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~l-i~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
++.|+..+.++. -++..|..++..+++.|. +.+.+ ...+...... + +...|..+.+.+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~----K-n~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS----K-NPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-----S--HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC----C-CHHHHHHHHHHHHHHHHHcc
Confidence 888887776653 377899999999998776 11122 3333333321 2 47788999999999999877
No 59
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=3.3 Score=46.53 Aligned_cols=240 Identities=18% Similarity=0.182 Sum_probs=113.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHH
Q 003155 546 PIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLH 625 (843)
Q Consensus 546 ~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~ 625 (843)
|.+..+++..+.+.+-++..+++-|+- .+.....+..+.++..+....++....+ =..++.++..||+...+.....
T Consensus 115 ~~lLeiL~VlPEE~~~~~~~~~a~Rr~--e~~~~l~~~~~~~L~~l~~lLe~~~l~~-~~~l~~Vl~~l~SWl~~~~~~~ 191 (559)
T KOG2081|consen 115 PILLEILKVLPEETRDIRLTVGANRRH--EFIDELAAQVSKVLVFLSDLLERSDLKS-SDDLEQVLRCLGSWLRLHVFPP 191 (559)
T ss_pred HHHHHHHHhCcHhhcchhhhhhhhhHH--HHHHHHHHhHHHHHHHHHHHHhhcCCCh-hhHHHHHHHHHhhhhhhccCCH
Confidence 455566666654443333334444432 1222333334455566666666655553 2455677777887654333333
Q ss_pred HHHH---HHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHh------hCCCcccCcCCcHHHHHHHHHhccCCChhHHH
Q 003155 626 NLIE---ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR------YCPQLFIPSSVFPSLVDCSMIGITVQHREASN 696 (843)
Q Consensus 626 ~~l~---~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~------~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~ 696 (843)
+.+. +++...|..++. ..-|-+.++-...++..+.. .++..+.++..+++.++++..+- +.+-.+
T Consensus 192 d~v~a~~pLi~l~F~sl~~---~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~---d~d~~~ 265 (559)
T KOG2081|consen 192 DQVLASFPLITLAFRSLSD---DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGE---DLDKNE 265 (559)
T ss_pred HHHHhhhHHHHHHHHHccc---chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhccc---CHHHHH
Confidence 3332 334444544441 12233344444444444442 23444566778899999986664 444556
Q ss_pred HHHHHHHHhhcc---ccCCCchhhHHHHHHHHhhhhHHHHHHHHHHccc--CCCCCCcccHHHHHHHHHHHhhHHHHHHH
Q 003155 697 SILTFLSDIFDL---AKSCKGEEFLSVRDSVIIPRGASITRILIASLTG--ALPSSRLETVTYALLALTRAYGVRSLEWA 771 (843)
Q Consensus 697 s~~~fl~~li~~---~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~--~~p~s~~~~~a~iL~~l~~~~~~~~~~wl 771 (843)
+.+++++.+.+- -.+.+..++...+..++...|..-...+-..+.+ .+.+...-.-.+-.+.+++-|...+..|+
T Consensus 266 a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l 345 (559)
T KOG2081|consen 266 AICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLL 345 (559)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHH
Confidence 666666665541 1111222333334444433332222222222211 22223333333444556666666677777
Q ss_pred HHHHhhCCC--CCCCHHHHHHHHHHH
Q 003155 772 KESVSLIPL--TALAEVERSRFLQAL 795 (843)
Q Consensus 772 ~~~l~~~P~--~~~t~~~~~~f~~~l 795 (843)
..-+. +|. ..++++..+.|-..+
T Consensus 346 ~~h~q-lp~~~~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 346 KRHVQ-LPPDQFDLPEEESEFFEFRL 370 (559)
T ss_pred HHHcc-CCCccccCccchhHHHHHHH
Confidence 66553 443 335555555554443
No 60
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.76 E-value=7.8 Score=43.67 Aligned_cols=286 Identities=14% Similarity=0.176 Sum_probs=145.7
Q ss_pred hHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCC-CChhhHHHHHHHHHHHHh
Q 003155 399 ILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 399 ~l~~vl~~l~~~l~~~~~-v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~-l~~~~~~~l~eaig~vi~ 476 (843)
+.++++.-|+..+..+.. =-...-+++++++.-++..+.|+...+++.+...+... ..+ -.+.=..+++|++|.+|.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v-~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEV-SKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHH-HTS---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcchhhhHHHHHHHHHH
Confidence 567777777776644320 12556788899998889989999888887776665320 001 123445669999999999
Q ss_pred cCCHH--HHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHh
Q 003155 477 ELPQV--DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI 554 (843)
Q Consensus 477 ~~p~~--~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~ 554 (843)
..... +....++..+-|. ++.++++.... . +--..+.++.+.+... ..+..+.+.+++|.+..- ..
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~---f~~ILq~dV~E---F----~PYvfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p-~l 169 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPP---FQEILQQDVQE---F----IPYVFQILAQLLELRP-SSPLPDAYKQLFPPLLSP-AL 169 (435)
T ss_dssp HS-GGGHH---HHHHHHHHH---HHHHHHTT-TT---T----HHHHHHHHHHHHHHSS---S--TTTGGGHHHHTSG-GG
T ss_pred hccCCChhHHHHHHHHHHHH---HHHHHHHHHHH---H----HHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc-ch
Confidence 76432 2334455555454 44555543211 1 1112566777776643 123333444444444321 23
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHhh-cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 003155 555 RAWDMRTMESLCRACKYAVRTSKRFMG--ITIGAILEEIQGLYQQ-HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEAL 631 (843)
Q Consensus 555 ~~~~~~i~e~~~~~l~~~i~~~~~~~~--p~l~~l~~~l~~~~~~-~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l 631 (843)
|.....+ -++.|.++..++.-...+. ..+.+++..+-.-... ......++++..++..+..+ ...+.+.+++.-+
T Consensus 170 We~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~-~l~~yl~~I~~ll 247 (435)
T PF03378_consen 170 WERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPE-ALEPYLKQIFTLL 247 (435)
T ss_dssp GGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HH-HHGGGHHHHHHHH
T ss_pred hccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
Confidence 4322222 3455555555544333321 2333444333222221 23345678999999988642 2455555555554
Q ss_pred HHHHHHhhcccccCCcCCchHHHHHHHHHHHH-hhCCCcccC------cCCcHHHHH-HHHHhcc-CCChhHHHHHHHHH
Q 003155 632 FKRTTCLLTSIEEFTSRPDVADDCFLLASRCI-RYCPQLFIP------SSVFPSLVD-CSMIGIT-VQHREASNSILTFL 702 (843)
Q Consensus 632 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~-~~~p~~~~~------s~~l~~i~~-~~~~~l~-~~e~~~~~s~~~fl 702 (843)
+++ |++ ...+..++.|..|++-+. ++.|..++. +..+..++. ..+-.++ +..+.--|.+.--+
T Consensus 248 l~R----Lq~----skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGl 319 (435)
T PF03378_consen 248 LTR----LQS----SKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGL 319 (435)
T ss_dssp HHH----HHH----C--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHH
T ss_pred HHH----Hhh----CCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHH
Confidence 443 331 123457788888876665 455665543 344555553 2233333 33333446666667
Q ss_pred HHhhc
Q 003155 703 SDIFD 707 (843)
Q Consensus 703 ~~li~ 707 (843)
++++.
T Consensus 320 tkLL~ 324 (435)
T PF03378_consen 320 TKLLC 324 (435)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77774
No 61
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.61 E-value=32 Score=40.01 Aligned_cols=163 Identities=10% Similarity=0.111 Sum_probs=93.3
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcccc-chHHHhhhccCCCCcHH
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAE-VMPQVMALLPKLPQQPQ 374 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~-~l~~l~~~l~~lp~~~~ 374 (843)
.+-+++.++.+.. .++.+.+.+.+.+.+. +.+|.-+-+|+.++..+....+..-.. +++.+...+. ..++.
T Consensus 96 ~~lAL~~l~~i~~-~~~~~~l~~~v~~ll~-----~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~--d~~~~ 167 (526)
T PF01602_consen 96 RGLALRTLSNIRT-PEMAEPLIPDVIKLLS-----DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS--DKDPS 167 (526)
T ss_dssp HHHHHHHHHHH-S-HHHHHHHHHHHHHHHH-----SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT--HSSHH
T ss_pred HHHHHhhhhhhcc-cchhhHHHHHHHHHhc-----CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc--CCcch
Confidence 3346777777666 5688888888888774 566777788888998888775443222 4555555552 23689
Q ss_pred HHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhc
Q 003155 375 LLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 452 (843)
Q Consensus 375 v~~t~~~~ig~y~~~l~~~p~~-~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~ 452 (843)
|+.+++.++... +..|+. ..+++.+...+.+.+..+. -++..+...+.+++..-...-.. ..+++.+...+.
T Consensus 168 V~~~a~~~l~~i----~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~ 241 (526)
T PF01602_consen 168 VVSAALSLLSEI----KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ 241 (526)
T ss_dssp HHHHHHHHHHHH----HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh
Confidence 999999998876 111110 0256777777766544432 25556666665554321111100 234444444432
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHhcCCH
Q 003155 453 GEGSLKVSAEDSLHLVEALSMVITELPQ 480 (843)
Q Consensus 453 ~~~~~~l~~~~~~~l~eaig~vi~~~p~ 480 (843)
.....-+++++..++.-.|.
T Consensus 242 --------s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 242 --------SSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp --------HHHHHHHHHHHHHHHHHSSS
T ss_pred --------ccccHHHHHHHHHHHHhhcc
Confidence 22334456666666654443
No 62
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=90.51 E-value=4.5 Score=35.73 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHH
Q 003155 399 ILASVLSILTSGMSTSE-----DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 473 (843)
Q Consensus 399 ~l~~vl~~l~~~l~~~~-----~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~ 473 (843)
++-.+++.+.+.+++++ .-+.+|-.|+..+.+-+++++....++|+..++..+.. ++=+...+++-..
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------~eL~~~al~~W~~ 80 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------PELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHH
Confidence 35567777777776543 23688999999999999999999999999999988753 3467788999999
Q ss_pred HHhcCCHHHHHHHHHHhhhHHHHHH
Q 003155 474 VITELPQVDAKKALEMLCLPVVTPL 498 (843)
Q Consensus 474 vi~~~p~~~~~~~l~~l~~p~~~~l 498 (843)
.+..+++++..+.+++.+.-++..+
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999888888888777666554
No 63
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.29 E-value=96 Score=41.79 Aligned_cols=394 Identities=12% Similarity=0.086 Sum_probs=190.6
Q ss_pred cchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhh------CCCCchhHHH
Q 003155 334 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA------ASSDPSILAS 402 (843)
Q Consensus 334 W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~------~p~~~~~l~~ 402 (843)
-...+.+++++..++++-.+. +...++.+++.|.+ ..+.++..+++++|..+..-.. +.. -++.
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s--~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG---aIP~ 492 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL--SSEQQQEYAVALLAILTDEVDESKWAITAAG---GIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHH
Confidence 356788999999988763222 24567888888765 2578888999999887642221 111 3555
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHHHH---Hhhhhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHh
Q 003155 403 VLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 403 vl~~l~~~l~~~-~~v~~~A~~a~~~lc~---~c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~ 476 (843)
+++.| ..+ .+++..|++++.++|. +++..+. +-++.|++.+.+- +.+.+.....+++.++.
T Consensus 493 LV~LL----~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---------d~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 493 LVQLL----ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---------GPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHH----cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---------CHHHHHHHHHHHHHHHh
Confidence 55544 332 3499999999999994 4454442 4566666655321 24566778888888876
Q ss_pred cCCHHHHHHHHHHhh-------hHHHHHHHHHHhcCCccc--c-----------------ccCchhhHHHHHHHHHhhhc
Q 003155 477 ELPQVDAKKALEMLC-------LPVVTPLQEIINQGPEIL--Q-----------------KKHPRDLTVHIDRFAYIFRY 530 (843)
Q Consensus 477 ~~p~~~~~~~l~~l~-------~p~~~~l~~~~~~~~~~~--~-----------------~~~~~~~~~~l~~l~~~~~~ 530 (843)
....+....+...+. .+.+..+.+++....... . ....+........|+.++.+
T Consensus 560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 544333322221111 111222222222110000 0 00000011112334444432
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh----h-h-hhhHHHHHHHHHHHHhhcCCchHh
Q 003155 531 VNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR----F-M-GITIGAILEEIQGLYQQHQQPCFL 604 (843)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~----~-~-~p~l~~l~~~l~~~~~~~~~~~~L 604 (843)
-. ...-..+.....|-+..++.. ++.++...++.++....+.... . + ...+|++++.+.. ......
T Consensus 640 ~~-d~~~avv~agaIpPLV~LLss--~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~-----~d~~v~ 711 (2102)
T PLN03200 640 RQ-DLCESLATDEIINPCIKLLTN--NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS-----SSIEVA 711 (2102)
T ss_pred Ch-HHHHHHHHcCCHHHHHHHHhc--CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC-----CChHHH
Confidence 10 011111233444555555543 5566777888888887754221 1 1 1245666665532 222222
Q ss_pred H-HHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCc-cc-----CcCCcH
Q 003155 605 Y-LSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQL-FI-----PSSVFP 677 (843)
Q Consensus 605 ~-l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~-~~-----~s~~l~ 677 (843)
. .+..+...... ++....+.+ ...+.....+++ +..|+.++.--.-+.++.+++|.- .+ ....+.
T Consensus 712 e~Al~ALanLl~~-~e~~~ei~~--~~~I~~Lv~lLr-----~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~ 783 (2102)
T PLN03200 712 EQAVCALANLLSD-PEVAAEALA--EDIILPLTRVLR-----EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVL 783 (2102)
T ss_pred HHHHHHHHHHHcC-chHHHHHHh--cCcHHHHHHHHH-----hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHH
Confidence 2 22222222222 211111110 111222333444 245777777777777777776632 11 122333
Q ss_pred HHHHHHHHhccCCChhHHHH--HHHHHHHhhccccCC--CchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccHH
Q 003155 678 SLVDCSMIGITVQHREASNS--ILTFLSDIFDLAKSC--KGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVT 753 (843)
Q Consensus 678 ~i~~~~~~~l~~~e~~~~~s--~~~fl~~li~~~~~~--~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a 753 (843)
.++++ ++..+.+.... +++-+..+.....+. ..+.|...++. ..| +.-+..++. .-+....++..
T Consensus 784 ~l~~~----L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~---p~~---l~~l~~~l~-~~~p~~~~kai 852 (2102)
T PLN03200 784 ALVDL----LNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEV---PSS---LEPLVRCLA-EGHPLVQDKAI 852 (2102)
T ss_pred HHHHH----HhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhc---cCc---hHHHHHHHH-cCChHHHHHHH
Confidence 34443 44444444333 777777777532111 12333222211 111 111223333 33456778888
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 003155 754 YALLALTRAYGVRSLEWAK 772 (843)
Q Consensus 754 ~iL~~l~~~~~~~~~~wl~ 772 (843)
++|-.|++-.|..+...+.
T Consensus 853 ~il~~~~~~~~~~~~~~~~ 871 (2102)
T PLN03200 853 EILSRLCRDQPVVLGDLIA 871 (2102)
T ss_pred HHHHHHhccChhHHHHHHh
Confidence 8888887777765555443
No 64
>PTZ00429 beta-adaptin; Provisional
Probab=89.23 E-value=60 Score=39.35 Aligned_cols=224 Identities=16% Similarity=0.156 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhh
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 451 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~ 451 (843)
.+-+++.++..|-.. +..+|. .+..-+..++...++|..+...+-..+.++|.+ ..+..|+..+....
T Consensus 310 ~~eiqyvaLr~I~~i---~~~~P~---lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane------~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 310 DAETQYIVCKNIHAL---LVIFPN---LLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP------SVAPEILKELAEYA 377 (746)
T ss_pred CccHHHHHHHHHHHH---HHHCHH---HHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc------ccHHHHHHHHHHHh
Confidence 466777777666433 334565 555556666666777766878888888888754 23455666555554
Q ss_pred cccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhcc
Q 003155 452 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 531 (843)
Q Consensus 452 ~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 531 (843)
. ..+.+-+..++.+||.++...|. .. ..++..|-+++.... . -....+..+..++|..
T Consensus 378 ~-----d~D~ef~r~aIrAIg~lA~k~~~-~a--------~~cV~~Ll~ll~~~~------~--~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 378 S-----GVDMVFVVEVVRAIASLAIKVDS-VA--------PDCANLLLQIVDRRP------E--LLPQVVTAAKDIVRKY 435 (746)
T ss_pred h-----cCCHHHHHHHHHHHHHHHHhChH-HH--------HHHHHHHHHHhcCCc------h--hHHHHHHHHHHHHHHC
Confidence 3 23466778899999999987754 12 222222333333211 0 0122345555555542
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHH
Q 003155 532 NHPEAVADAIQRLWPIFKAIFDIR----AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLS 607 (843)
Q Consensus 532 ~~~~~~~~~~~~~~~~l~~il~~~----~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~ 607 (843)
|+- .++..++..+ ..+++.... +-+++..++..+ +-.+.+++.++..|...+...=+.++
T Consensus 436 --P~~---------~il~~L~~~~~~~~i~e~~AKaa----iiWILGEy~~~I-~~a~~~L~~~i~~f~~E~~~VqlqlL 499 (746)
T PTZ00429 436 --PEL---------LMLDTLVTDYGADEVVEEEAKVS----LLWMLGEYCDFI-ENGKDIIQRFIDTIMEHEQRVQLAIL 499 (746)
T ss_pred --ccH---------HHHHHHHHhhcccccccHHHHHH----HHHHHHhhHhhH-hhHHHHHHHHHhhhccCCHHHHHHHH
Confidence 221 0222222222 123333333 333343443332 23456666666666554433445677
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHH
Q 003155 608 SEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDC 655 (843)
Q Consensus 608 ~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~ 655 (843)
+..++.|-..+. ....++.. ++..+. ...++||+++--
T Consensus 500 ta~vKlfl~~p~---~~~~~l~~----vL~~~t---~~~~d~DVRDRA 537 (746)
T PTZ00429 500 SAAVKMFLRDPQ---GMEPQLNR----VLETVT---THSDDPDVRDRA 537 (746)
T ss_pred HHHHHHHhcCcH---HHHHHHHH----HHHHHH---hcCCChhHHHHH
Confidence 888888776542 22333333 333232 235789997763
No 65
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.55 E-value=84 Score=40.19 Aligned_cols=258 Identities=13% Similarity=0.114 Sum_probs=149.8
Q ss_pred hhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCC--------------CCchhHHH
Q 003155 337 AEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAAS--------------SDPSILAS 402 (843)
Q Consensus 337 ~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p--------------~~~~~l~~ 402 (843)
=|.-+|.=|.+++.-+.+.-+-...+...-..+. +|.+.+-+|.+----+.|=.+.. ....|++.
T Consensus 920 ~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~k 998 (1702)
T KOG0915|consen 920 EETELFQEGTLGKTPDGGKISTYKELCNLASDLG-QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKK 998 (1702)
T ss_pred cchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHH
Confidence 3666788777777665543222233332222222 67777777777766666754210 01148899
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH
Q 003155 403 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 481 (843)
Q Consensus 403 vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~ 481 (843)
+++-|.+.=-+|. +|+.+-.+--..|..+.+....-|++.|++-+...+.. + ....|....-|+.-+++.-|.+
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~----k-ewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS----K-EWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc----h-hHHHHHHHHHHHHHHHcCCChH
Confidence 9999988877774 36655554455566776777778999998876655532 1 2456666777888888887777
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhH-HHHHHHHHh-hhccCCcch--HHHHHHHHHHHHHHHHHhhcC
Q 003155 482 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLT-VHIDRFAYI-FRYVNHPEA--VADAIQRLWPIFKAIFDIRAW 557 (843)
Q Consensus 482 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~-~~~~~~~~~--~~~~~~~~~~~l~~il~~~~~ 557 (843)
+..+-+-.+..-.+.-+..+-.. .|..+ ...+.++++ +|.++..++ ...++..+.|.+..-=- ...
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEs---------VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gi-ms~ 1143 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKES---------VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGI-MSK 1143 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCc-ccc
Confidence 66555444433333222222111 11111 224555555 444443333 33456666665543110 011
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHH
Q 003155 558 DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEV 610 (843)
Q Consensus 558 ~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~l 610 (843)
-.+++......+-.++...|..+.|++|.++..+...|..-+..-.-|++..+
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 23455555566666778889999999999999999988875544444444443
No 66
>PRK09687 putative lyase; Provisional
Probab=87.72 E-value=40 Score=35.58 Aligned_cols=137 Identities=9% Similarity=0.032 Sum_probs=75.3
Q ss_pred hcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHh
Q 003155 306 VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGA 385 (843)
Q Consensus 306 vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~ 385 (843)
-+|...++..+.. .+. +.+-..+..+.++|+.++..-.. ..+.++.+...+.+ ...+.||..++..+|.
T Consensus 49 ~~~~~~~~~~l~~----ll~-----~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 49 LRGGQDVFRLAIE----LCS-----SKNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALE-DKSACVRASAINATGH 117 (280)
T ss_pred hcCcchHHHHHHH----HHh-----CCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhc
Confidence 3565555554433 221 33445667888888887753211 12233433333232 2368999999999997
Q ss_pred hHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhH
Q 003155 386 YSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 464 (843)
Q Consensus 386 y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~ 464 (843)
... .++. ..+.++..+...+.++ ..|+..|+.|+-++.. +.-+..+..++.. -+.+.|
T Consensus 118 ~~~---~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d-----~~~~VR 176 (280)
T PRK09687 118 RCK---KNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKD-----PNGDVR 176 (280)
T ss_pred ccc---cccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcC-----CCHHHH
Confidence 642 1221 2344555554545432 2488888988865432 1123344444432 134678
Q ss_pred HHHHHHHHHH
Q 003155 465 LHLVEALSMV 474 (843)
Q Consensus 465 ~~l~eaig~v 474 (843)
....+++|.+
T Consensus 177 ~~A~~aLg~~ 186 (280)
T PRK09687 177 NWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcC
Confidence 8888888877
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.49 E-value=14 Score=36.16 Aligned_cols=143 Identities=10% Similarity=0.150 Sum_probs=81.7
Q ss_pred HHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHH--HHhhCCCCchhHHHHHHHHHhccCCC-HH
Q 003155 340 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSILTSGMSTS-ED 416 (843)
Q Consensus 340 ~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~--~l~~~p~~~~~l~~vl~~l~~~l~~~-~~ 416 (843)
++-+++-++-..+.--+++++.+...|.. ++|.||++++.++..+.. +++-. +.++..++..+.++ ++
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~~d~ik~k-------~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLILEDMIKVK-------GQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCceeeh-------hhhhHHHHHHHcCCCHH
Confidence 44455555544443334566666655542 479999999999988643 22222 23323333444443 35
Q ss_pred HHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhHH
Q 003155 417 TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-QVDAKKALEMLCLPV 494 (843)
Q Consensus 417 v~~~A~~a~~~lc~~-c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p-~~~~~~~l~~l~~p~ 494 (843)
++..|...|..+... ....+...++.++..+.+....+.....+.+.+..+|+ .++..++ +......++.++.-+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~---fll~~i~~d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYK---FLLDFIDKDKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHH---HHHHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999887 55566677777776555443210000234555555554 5555555 444555555554443
No 68
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.41 E-value=9.6 Score=33.70 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 400 LASVLSILTSGMST-----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 400 l~~vl~~l~~~l~~-----~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
+-.+++.+...+++ +..-..+|-.++..+.+-|++.+.+..++++..++..+.. .+-+...+++-...
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-------~~l~~~al~~W~~f 81 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-------PELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-------hhhHHHHHHHHHHH
Confidence 45566666655544 2225689999999999999999999999999999998753 25567789999999
Q ss_pred HhcCCHHHHHHHHHHhhhHHHHHH
Q 003155 475 ITELPQVDAKKALEMLCLPVVTPL 498 (843)
Q Consensus 475 i~~~p~~~~~~~l~~l~~p~~~~l 498 (843)
+..+++++..+.+.+++..++..|
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999999888888888877766554
No 69
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.51 E-value=97 Score=38.70 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=49.7
Q ss_pred HHHHHHHhhhc---hhhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCCC--cchHHHHHHHHHHHhhhccC
Q 003155 48 ALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAG 120 (843)
Q Consensus 48 Vl~~l~~~l~~---~~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~~--~~~~~A~~~l~eii~~~~~~ 120 (843)
+++++++++.. .+.+..+|+-+...-.+ ++.+. .-...++.+...+.|+ ++|..|++.+++++..-++.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~---i~de~-~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTY---IDDEV-KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhh---cchHH-HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 44666666654 46788888888888775 33332 2356788888888876 78999999999999766543
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.85 E-value=36 Score=34.55 Aligned_cols=136 Identities=11% Similarity=0.181 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHh-HHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH
Q 003155 558 DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFL-YLSSEVIKIFGSDPSCASYLHNLIEALFKRTT 636 (843)
Q Consensus 558 ~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L-~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~ 636 (843)
.+.++..+|.+++.++..++..+.|+++.+++.++..+.... .++ .-+...+..+-.. +. ....++ .
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~--~~-~~~~~~-------~ 133 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSK--KFIREAANNALDAIIES--CS-YSPKIL-------L 133 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTT--S--H--HHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHHHHH--CC-cHHHHH-------H
Confidence 345788999999999999999998888888877766554322 111 1111122221111 11 001111 1
Q ss_pred HhhcccccCCcCCchHHHHHHHHHHHHhhCC---CcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 003155 637 CLLTSIEEFTSRPDVADDCFLLASRCIRYCP---QLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIF 706 (843)
Q Consensus 637 ~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p---~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li 706 (843)
..+.. ..-..+|.++.....++..++..++ ..+-.+..++.+......++.-.++++=.+|-..+..+.
T Consensus 134 ~~l~~-~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 134 EILSQ-GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHH-HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 11110 1124679999999999999999888 222223335667777777776666655555555555444
No 71
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.27 E-value=1.1 Score=29.64 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Q 003155 403 VLSILTSGMSTS-EDTAAAAALAFRHICDDC 432 (843)
Q Consensus 403 vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c 432 (843)
+++.+++.+.++ .+|+.+|+.+|..+++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 356777777765 359999999999999865
No 72
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=54 Score=40.25 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=83.7
Q ss_pred chhhHHHHHHHHhhccCCCcc-ccchHHHhhhccC---CCCcHHHHHHH----HHHHHhhHHH-----------------
Q 003155 335 RPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPK---LPQQPQLLQTV----CLTIGAYSKW----------------- 389 (843)
Q Consensus 335 ~~~Ea~L~~l~~iae~~~~~~-~~~l~~l~~~l~~---lp~~~~v~~t~----~~~ig~y~~~----------------- 389 (843)
+-++|++|...|++.+-+..+ ++++.++.+.|.. +....-+|+++ -+.+||...+
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 356899999999999887663 4566666655421 22222233332 2345664333
Q ss_pred -----------HhhCCCCchhHHHHHHHHH-hccCC-CHHHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHhhcccC
Q 003155 390 -----------FDAASSDPSILASVLSILT-SGMST-SEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEG 455 (843)
Q Consensus 390 -----------l~~~p~~~~~l~~vl~~l~-~~l~~-~~~v~~~A~~a~~~lc~~c~~~l~-~~~~~li~~~~~~~~~~~ 455 (843)
++..|. |..++++=++ ..+.+ ..+++..|++++.+|...-.+.+. -+++.++... +.
T Consensus 523 rsNcy~~l~~~ia~~~~---y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~---ls--- 593 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSG---YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST---LS--- 593 (1133)
T ss_pred hhhHHHHHhHHHHhhhh---HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh---cC---
Confidence 233343 6677776554 33433 334889999999999998888887 4577776532 21
Q ss_pred CCCCChhhHHHHHHHHHHHHhcC
Q 003155 456 SLKVSAEDSLHLVEALSMVITEL 478 (843)
Q Consensus 456 ~~~l~~~~~~~l~eaig~vi~~~ 478 (843)
-+...|.-.+-|.|.++.+.
T Consensus 594 ---~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 594 ---KDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred ---CChHHhhhhHHHHHHHHHHh
Confidence 24567788888999998874
No 73
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.16 E-value=19 Score=34.68 Aligned_cols=132 Identities=12% Similarity=0.131 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhh
Q 003155 312 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 386 (843)
Q Consensus 312 ~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y 386 (843)
.+..+...+.+.+. +.+...+-+++..++.+.+.++.+ ....+..+++.|-+ ++.+.+...++.++++.
T Consensus 22 ~l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 22 ALHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 44455555555553 344555557788888887776433 23445556666655 55678999999999999
Q ss_pred HHHHhhCCCCc-----hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 387 SKWFDAASSDP-----SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 387 ~~~l~~~p~~~-----~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
..+....|+.. ..++.+++.++.-++.+. +...|..++..+-..-...+-||.+.+-..+.+.
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 99888777621 245666666655554333 6677778888777766666777777776655543
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.04 E-value=34 Score=40.25 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhcCCH-HHHHHHHHHH------------HHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHH
Q 003155 542 QRLWPIFKAIFDIRAWDM-RTMESLCRAC------------KYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSS 608 (843)
Q Consensus 542 ~~~~~~l~~il~~~~~~~-~i~e~~~~~l------------~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~ 608 (843)
|+..-++..++.+|++.. .++...|..+ -++++.++.. .|--+.+++.+...|..-..-.-+.+++
T Consensus 404 qE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~-i~~a~elL~~f~en~~dE~~~Vql~LLt 482 (734)
T KOG1061|consen 404 QEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAER-IENALELLESFLENFKDETAEVQLELLT 482 (734)
T ss_pred eehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhc-cCcHHHHHHHHHhhcccchHHHHHHHHH
Confidence 455566777777776543 2333333322 2233333322 2334566676666666544445678999
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHH
Q 003155 609 EVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADD 654 (843)
Q Consensus 609 ~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~ 654 (843)
..|..|+..+. .-+.++..++.... +-.++||+++.
T Consensus 483 a~ik~Fl~~p~---~tq~~l~~vL~~~~-------~d~~~~dlrDr 518 (734)
T KOG1061|consen 483 AAIKLFLKKPT---ETQELLQGVLPLAT-------ADTDNPDLRDR 518 (734)
T ss_pred HHHHHHhcCCc---cHHHHHHHHHhhhh-------ccccChhhhhh
Confidence 99999988752 33333333322221 23578998876
No 75
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.93 E-value=1.2e+02 Score=35.84 Aligned_cols=186 Identities=16% Similarity=0.233 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhHHHHHHHcC---------CchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccc
Q 003155 158 AIARLFADMGDSYVELIATG---------SDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEAS 228 (843)
Q Consensus 158 ~l~~l~~~~~e~~~~~l~~~---------~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~ 228 (843)
.++++++...++..++|+.+ ..-+++++--+|+..+.||.+|++-|+.+-..+...-
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-------------- 348 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-------------- 348 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--------------
Confidence 45555555555555555421 0114456666678888999999999999877765421
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcC
Q 003155 229 AEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG 308 (843)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~ 308 (843)
-+.++++.+-+....-.+ +|.|+=..||+- +-.++.+|.--..
T Consensus 349 --------------Nvediv~~Lkke~~kT~~------~e~d~~~~yRql-----------------Liktih~cav~Fp 391 (948)
T KOG1058|consen 349 --------------NVEDIVQFLKKEVMKTHN------EESDDNGKYRQL-----------------LIKTIHACAVKFP 391 (948)
T ss_pred --------------cHHHHHHHHHHHHHhccc------cccccchHHHHH-----------------HHHHHHHHhhcCh
Confidence 011222222222211111 123344667877 6677777764433
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHH---HHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHh
Q 003155 309 GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCI---RAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGA 385 (843)
Q Consensus 309 ~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l---~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~ 385 (843)
.+-..+.+.+-+.+. +.+ -+|+...+ +.+-|.++.-....+.+++..+.++- .+.+...++|.+|.
T Consensus 392 --~~aatvV~~ll~fis-----D~N---~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ir-S~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 392 --EVAATVVSLLLDFIS-----DSN---EAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIR-SSKICRGALWILGE 460 (948)
T ss_pred --HHHHHHHHHHHHHhc-----cCC---HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhc-ccccchhHHHHHHH
Confidence 244444455555542 111 23433333 44444444334455666666665543 45677899999999
Q ss_pred hHHHHhhCCCCchhHHHHHHHHHhccC
Q 003155 386 YSKWFDAASSDPSILASVLSILTSGMS 412 (843)
Q Consensus 386 y~~~l~~~p~~~~~l~~vl~~l~~~l~ 412 (843)
|++=... +..++..+-..+.
T Consensus 461 Yce~~~~-------i~~~~k~i~~slG 480 (948)
T KOG1058|consen 461 YCEGLSE-------IQSVIKIIRQSLG 480 (948)
T ss_pred HHhhhHH-------HHHHHHHHHHhcc
Confidence 9874432 3445555545454
No 76
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.84 E-value=48 Score=36.88 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=104.8
Q ss_pred HHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCC
Q 003155 379 VCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS 456 (843)
Q Consensus 379 ~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~--~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~ 456 (843)
.+.+-|.++-|=+ +...+|..+++.+.+.+ .....|-..+.++|+.-...|..+..--+.........
T Consensus 313 ~m~~e~sfsvWeq-------~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d--- 382 (516)
T KOG2956|consen 313 KMLCEGSFSVWEQ-------HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD--- 382 (516)
T ss_pred HHHHccchhHHHH-------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC---
Confidence 3445577777743 45556666666665532 25577777888888777777877776655554444321
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcch
Q 003155 457 LKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEA 536 (843)
Q Consensus 457 ~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 536 (843)
-..+.....-|++..+++...+..+...+..+ +...+ .++. ...++++..+|..+.. +-
T Consensus 383 --s~~~v~~~Aeed~~~~las~~P~~~I~~i~~~-----------Ilt~D------~~~~-~~~iKm~Tkl~e~l~~-Ee 441 (516)
T KOG2956|consen 383 --SQDEVMRVAEEDCLTTLASHLPLQCIVNISPL-----------ILTAD------EPRA-VAVIKMLTKLFERLSA-EE 441 (516)
T ss_pred --CchhHHHHHHHHHHHHHHhhCchhHHHHHhhH-----------HhcCc------chHH-HHHHHHHHHHHhhcCH-HH
Confidence 12334444556666666665444443332221 11111 1222 3347899999988764 33
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHH
Q 003155 537 VADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSK-RFMGITIGAIL 588 (843)
Q Consensus 537 ~~~~~~~~~~~l~~il~~~~~-~~~i~e~~~~~l~~~i~~~~-~~~~p~l~~l~ 588 (843)
....+..+.|.+.+ .|.+ ++.++..+..|+-.++...| ..+.|++.++-
T Consensus 442 L~~ll~diaP~~iq---ay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQ---AYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred HHHhhhhhhhHHHH---HhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 44455566665544 3443 45677788888888888888 78888887654
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=1.4e+02 Score=35.26 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=64.9
Q ss_pred HHHHhhccCCCcc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH-HHHHH
Q 003155 343 CIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAA 420 (843)
Q Consensus 343 ~l~~iae~~~~~~-~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~-~v~~~ 420 (843)
|++.++.-+.++- -+.-+.+|.++.+ ..|.+|.-++.++.+. |-++|+ -+.+.++.|.+.|.+|. .|+++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~s--skpYvRKkAIl~lykv---FLkYPe---Alr~~FprL~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNS--SKPYVRKKAILLLYKV---FLKYPE---ALRPCFPRLVEKLEDPDPSVVSA 200 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhc--CchHHHHHHHHHHHHH---HHhhhH---hHhhhHHHHHHhccCCCchHHHH
Confidence 3333444344432 2445666766643 2578888777666543 444676 79999999999998763 49999
Q ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 003155 421 AALAFRHICDDCRKKLCGYLDGLYNVYR 448 (843)
Q Consensus 421 A~~a~~~lc~~c~~~l~~~~~~li~~~~ 448 (843)
|..-|-.|+....+...|..|.++..+.
T Consensus 201 AV~VICELArKnPknyL~LAP~ffkllt 228 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAPLFYKLLV 228 (877)
T ss_pred HHHHHHHHHhhCCcccccccHHHHHHHh
Confidence 9998888888877776666666555443
No 78
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.93 E-value=15 Score=35.73 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 400 LASVLSILTSGMSTSED-TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 400 l~~vl~~l~~~l~~~~~-v~~~A~~a~~~lc~~-c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
....|+.++.|+.+.+. ..--|-..+..+.+. ....+.|.+++++.-+..+++.. +.+.....++++-.++..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----DPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHh
Confidence 34677788999975321 556788888888888 77889999999999999999742 456777778888777655
Q ss_pred CCH--HHHHHHHHHhhhH
Q 003155 478 LPQ--VDAKKALEMLCLP 493 (843)
Q Consensus 478 ~p~--~~~~~~l~~l~~p 493 (843)
.+. +...+++.+++.+
T Consensus 111 ~~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPV 128 (183)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 433 4455666665433
No 79
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.16 E-value=1.1e+02 Score=36.79 Aligned_cols=185 Identities=7% Similarity=0.032 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 373 PQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 373 ~~v~~t~~~~ig~y~~~l~~~p~~-~~~l~~vl~~l~~~l~~~~~-v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
+.++..++..+ .+|+.++... ......++.+....+.+.+. |-..|-.++..+|+-..+.+. +.+.+.|.+.
T Consensus 741 vpik~~gL~~l---~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il---~dL~e~Y~s~ 814 (982)
T KOG4653|consen 741 VPIKGYGLQML---RHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL---PDLSEEYLSE 814 (982)
T ss_pred ccchHHHHHHH---HHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH---HHHHHHHHhc
Confidence 44555555544 4677643211 13566778888777765321 667888999999987555443 3344444433
Q ss_pred hcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhc
Q 003155 451 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 530 (843)
Q Consensus 451 ~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 530 (843)
- .+...+.++++=|+++.++++..+ .......++++.....++.+ +....+..+..++.+.+.
T Consensus 815 k-----~k~~~d~~lkVGEai~k~~qa~Ge-----l~~~y~~~Li~tfl~gvrep-------d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 815 K-----KKLQTDYRLKVGEAILKVAQALGE-----LVFKYKAVLINTFLSGVREP-------DHEFRASSLANLGQLCQL 877 (982)
T ss_pred c-----cCCCccceehHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHhcCCc-------hHHHHHhHHHHHHHHHHH
Confidence 2 234468899999999999998632 33333334444444433311 111233335555555444
Q ss_pred cCC--cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 003155 531 VNH--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIG 585 (843)
Q Consensus 531 ~~~--~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~ 585 (843)
... .+ ++.+....+..+... .++.-++.++.-+++..++..|..+.|++.
T Consensus 878 ~a~~vsd----~~~ev~~~Il~l~~~-d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 878 LAFQVSD----FFHEVLQLILSLETT-DGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred HhhhhhH----HHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 321 22 222222222222221 344556777888888899999988888654
No 80
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=76.15 E-value=13 Score=44.29 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=93.8
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhc------C-------CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHH
Q 003155 405 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLC------G-------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 471 (843)
Q Consensus 405 ~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~------~-------~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eai 471 (843)
..+...+..|+ +..+|+++|.-+..||...+- + ++.+++..+.+... ..+...+....+++
T Consensus 818 ~klld~Ls~~~-~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-----t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 818 EKLLDLLSGPS-TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-----TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHhcCCcc-ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-----cCCccchhHHHHHH
Confidence 34446677777 899999999998877664332 1 33445555554443 12455778899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHH-HHHHHHHHHHHH
Q 003155 472 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA-DAIQRLWPIFKA 550 (843)
Q Consensus 472 g~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~ 550 (843)
++|+..+|.....+-+..++.-+++.+ .-. ++...+..+.++=..+...++.. .....+.|.+..
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~L----s~~----------D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLs 957 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQAL----SMP----------DVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLS 957 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhc----CCC----------ccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHh
Confidence 999999998655555544444333222 111 11111222332221121112211 234556666655
Q ss_pred HHHhhcCC-HHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHH
Q 003155 551 IFDIRAWD-MRTMESLCRACKYAVR-TSKRFMGITIGAILEEIQ 592 (843)
Q Consensus 551 il~~~~~~-~~i~e~~~~~l~~~i~-~~~~~~~p~l~~l~~~l~ 592 (843)
+-....++ ..+++.+..|+....| .+-..+.||-|.++..+.
T Consensus 958 ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 958 LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhh
Confidence 44333222 4567888888887776 355566777666655443
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=75.74 E-value=8.5 Score=32.18 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|.....++++++.+. ..+.++.++..+. .+++.||..+++.+|++.. + .+++.+.+.
T Consensus 11 ~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~~-----~-------~~~~~L~~~ 70 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG------DPEAIPALIELLK--DEDPMVRRAAARALGRIGD-----P-------EAIPALIKL 70 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCHH-----H-------HTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----H-------HHHHHHHHH
Confidence 678998999899988332 2355677777663 3589999999999998842 2 334444444
Q ss_pred cCCC--HHHHHHHHHHH
Q 003155 411 MSTS--EDTAAAAALAF 425 (843)
Q Consensus 411 l~~~--~~v~~~A~~a~ 425 (843)
+.++ ..++..|..|+
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 4432 33677787776
No 82
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=75.53 E-value=6.1 Score=35.08 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=43.1
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 003155 358 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR 433 (843)
Q Consensus 358 ~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~ 433 (843)
.++.+++.+. ..++.++..++++++..+.-....... ...++.+++++.. .++ +++..|+.++.++|....
T Consensus 8 ~i~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~-~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 8 GLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDE-EVVKAALWALRNLAAGPE 81 (120)
T ss_pred ChHHHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCH-HHHHHHHHHHHHHccCcH
Confidence 4555555554 235899999999999887531110000 0144444444432 123 499999999999997653
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.33 E-value=1.6e+02 Score=33.78 Aligned_cols=336 Identities=15% Similarity=0.106 Sum_probs=153.0
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHH-HHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHH
Q 003155 408 TSGMSTSE-DTAAAAALAFRHICDDCRKKL-CGYLDGLYNV-YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 484 (843)
Q Consensus 408 ~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l-~~~~~~li~~-~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~ 484 (843)
.+++.+.- +=+.+|+.-+.++.++|-..= ...+..+++. +......+ ....|..-.=|++.++-++..+...
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~-----~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSP-----HANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCc-----ccccccchHHHHHHHHHHhccccHH
Confidence 35565431 135788888888888765321 1234444442 22222211 1112223344666666666665555
Q ss_pred HHHHHhhhHHHHHHHHHHhcCCccccccCchhh-HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHH---
Q 003155 485 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR--- 560 (843)
Q Consensus 485 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~--- 560 (843)
|++.++.|++..+.. +. ...+=+ +..+-.++++.++ .+..++..+..++..+..- .+..
T Consensus 81 -Y~~~iv~Pv~~cf~D----~d-----~~vRyyACEsLYNiaKv~k~-----~v~~~Fn~iFdvL~klsaD--sd~~V~~ 143 (675)
T KOG0212|consen 81 -YLEKIVPPVLNCFSD----QD-----SQVRYYACESLYNIAKVAKG-----EVLVYFNEIFDVLCKLSAD--SDQNVRG 143 (675)
T ss_pred -HHHHhhHHHHHhccC----cc-----ceeeeHhHHHHHHHHHHhcc-----CcccchHHHHHHHHHHhcC--Ccccccc
Confidence 999999998766543 11 111111 2234455555543 1233455555544444321 1111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHhh
Q 003155 561 TMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD-PSCASYLHNLIEALFKRTTCLL 639 (843)
Q Consensus 561 i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~-~~~~~~l~~~l~~l~~~~~~~l 639 (843)
-.|-.-|.++.++..-...+ -++.+++.+....-......=..+++++-...... -+....+ ..++..-|.+|
T Consensus 144 ~aeLLdRLikdIVte~~~tF--sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl----~~~ldGLf~~L 217 (675)
T KOG0212|consen 144 GAELLDRLIKDIVTESASTF--SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL----PSLLDGLFNML 217 (675)
T ss_pred HHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc----hHHHHHHHHHh
Confidence 13444555565553322111 12334444332222211111123333333333221 1122232 33333445555
Q ss_pred cccccCCcCCchHHHHHHHHHHHH---hhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchh
Q 003155 640 TSIEEFTSRPDVADDCFLLASRCI---RYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEE 716 (843)
Q Consensus 640 ~~~~~~~~~pD~~~~~f~l~~~~~---~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~ 716 (843)
. ++++|++.-.=..+..++ +..|..+- ...++...+.-+..+|++....|+.++..|+..++..-.+.
T Consensus 218 s-----D~s~eVr~~~~t~l~~fL~eI~s~P~s~d----~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 218 S-----DSSDEVRTLTDTLLSEFLAEIRSSPSSMD----YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred c-----CCcHHHHHHHHHHHHHHHHHHhcCccccC----cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 4 345665532222222232 34555442 23344444444677888888888998888887532111111
Q ss_pred hHHHHHHHHh----------hhhHHHHHHHHHHcccCC-CCCCc--ccHHHHHHHHHHHhhHH----HHHHHHHHHhhCC
Q 003155 717 FLSVRDSVII----------PRGASITRILIASLTGAL-PSSRL--ETVTYALLALTRAYGVR----SLEWAKESVSLIP 779 (843)
Q Consensus 717 ~~~~~~~~~~----------~~g~~lv~~ll~~l~~~~-p~s~~--~~~a~iL~~l~~~~~~~----~~~wl~~~l~~~P 779 (843)
++.++..++. +.....++..+..+++.- ..+.+ ..+.++|.........+ ..+|+.......|
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 1111111111 112344454455554322 22223 36667777776655443 4588887776667
Q ss_pred C
Q 003155 780 L 780 (843)
Q Consensus 780 ~ 780 (843)
+
T Consensus 369 ~ 369 (675)
T KOG0212|consen 369 G 369 (675)
T ss_pred c
Confidence 5
No 84
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=75.30 E-value=4 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.7
Q ss_pred CCCcchhhHHHHHHHHhhccC
Q 003155 331 HNEWRPAEAALFCIRAISTYV 351 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~ 351 (843)
+.+|.-++++.++++.+++.+
T Consensus 11 D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp -SSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhhC
Confidence 788999999999999998754
No 85
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.86 E-value=2e+02 Score=34.72 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=61.8
Q ss_pred cchhhHHHHHHHHhhccCCCc-----cccchHHHhhhcc----------------CCC-CcH--HHHHHHHHHHHhhHHH
Q 003155 334 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLP----------------KLP-QQP--QLLQTVCLTIGAYSKW 389 (843)
Q Consensus 334 W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~----------------~lp-~~~--~v~~t~~~~ig~y~~~ 389 (843)
..-.--|+-|+.-+-|.++.. +...+|-++.-|. .+. .|| .++.-++..+-.|-+|
T Consensus 226 ~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDF 305 (1051)
T KOG0168|consen 226 FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDF 305 (1051)
T ss_pred HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHH
Confidence 333345566666666766655 2234454443321 121 253 5666677777788888
Q ss_pred Hhh-----------------CCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhh
Q 003155 390 FDA-----------------ASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR 433 (843)
Q Consensus 390 l~~-----------------~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~ 433 (843)
|.- +|+...+...+++.|.+-|+.. +++...+|..|.++++...
T Consensus 306 FSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 306 FSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 862 3444457788888888877643 3488999999999987643
No 86
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.36 E-value=2e+02 Score=34.44 Aligned_cols=354 Identities=10% Similarity=0.072 Sum_probs=163.1
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCC-CC-cH
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL-PQ-QP 373 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~l-p~-~~ 373 (843)
++-.+-.+|+. +++ --..+.+.+...+. +.+=--+=++++++..+ | ++.-+.+.+=+.-++++ |+ +.
T Consensus 163 AA~AIpKLYsL-d~e-~k~qL~e~I~~LLa-----D~splVvgsAv~AF~ev---C-PerldLIHknyrklC~ll~dvde 231 (968)
T KOG1060|consen 163 AAHAIPKLYSL-DPE-QKDQLEEVIKKLLA-----DRSPLVVGSAVMAFEEV---C-PERLDLIHKNYRKLCRLLPDVDE 231 (968)
T ss_pred HHHhhHHHhcC-Chh-hHHHHHHHHHHHhc-----CCCCcchhHHHHHHHHh---c-hhHHHHhhHHHHHHHhhccchhh
Confidence 88888888875 533 34456667766663 34444567888887533 3 22223444444444443 32 22
Q ss_pred HHHHHHHHHHHhhHH-HHhh------------------------------CCCCchhHHHHHHHHHhccCCCHHHHHHHH
Q 003155 374 QLLQTVCLTIGAYSK-WFDA------------------------------ASSDPSILASVLSILTSGMSTSEDTAAAAA 422 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~-~l~~------------------------------~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~ 422 (843)
-=+.-.+.++.||++ .|.. +|+. .+|....+-++.. .++. |..++|
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~-~lLL~stkpLl~S-~n~s-VVmA~a 308 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDL-KLLLQSTKPLLQS-RNPS-VVMAVA 308 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccH-HHHHHhccHHHhc-CCcH-HHHHHH
Confidence 223445677888876 2221 1110 1111111111111 2345 888899
Q ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hHHH---
Q 003155 423 LAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC----LPVV--- 495 (843)
Q Consensus 423 ~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~----~p~~--- 495 (843)
.++..++-... . ..|...+..++.. ..+.+.-++..|+.+.-.-|. -..+++..+. .|..
T Consensus 309 ql~y~lAP~~~--~----~~i~kaLvrLLrs------~~~vqyvvL~nIa~~s~~~~~-lF~P~lKsFfv~ssDp~~vk~ 375 (968)
T KOG1060|consen 309 QLFYHLAPKNQ--V----TKIAKALVRLLRS------NREVQYVVLQNIATISIKRPT-LFEPHLKSFFVRSSDPTQVKI 375 (968)
T ss_pred hHHHhhCCHHH--H----HHHHHHHHHHHhc------CCcchhhhHHHHHHHHhcchh-hhhhhhhceEeecCCHHHHHH
Confidence 99988875432 2 2233333344432 245677778888777655321 1122222211 1111
Q ss_pred ---HHHHHHHhcCCccc--c------ccCchh-hHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 003155 496 ---TPLQEIINQGPEIL--Q------KKHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTME 563 (843)
Q Consensus 496 ---~~l~~~~~~~~~~~--~------~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e 563 (843)
+-|.++++.+.... . +...+. .+..+..|+.+...... +-..++.-+.+++.. ++..|+.
T Consensus 376 lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llss--hde~Vv~ 447 (968)
T KOG1060|consen 376 LKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSS--HDELVVA 447 (968)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhc--ccchhHH
Confidence 11112221111000 0 000011 12224444444433222 223444445555543 3666777
Q ss_pred HHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccc
Q 003155 564 SLCRACKYAVRT-SKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI 642 (843)
Q Consensus 564 ~~~~~l~~~i~~-~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~ 642 (843)
+....+|+++.. ...+ .-++-.+...+-...-..--++.+|+++..+.. +..|...+ +..+.
T Consensus 448 eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp~ARA~IiWLige~~e~----------vpri~PDV----LR~la-- 510 (968)
T KOG1060|consen 448 EAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVPAARAGIIWLIGEYCEI----------VPRIAPDV----LRKLA-- 510 (968)
T ss_pred HHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh----------cchhchHH----HHHHH--
Confidence 777888888765 3333 122222222221111112234667775443332 22222222 22221
Q ss_pred ccC-CcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Q 003155 643 EEF-TSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 707 (843)
Q Consensus 643 ~~~-~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~ 707 (843)
..+ ++.+++.---+.+..++.-..+ ..+..++++...-....-..-.|.-.+|+.+++.
T Consensus 511 ksFs~E~~evKlQILnL~aKLyl~~~------~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~ 570 (968)
T KOG1060|consen 511 KSFSDEGDEVKLQILNLSAKLYLTNI------DQTKLLVQYVFELARYDLSYDIRDRARFLRQLIS 570 (968)
T ss_pred HhhccccchhhHHHHHhhhhheEech------hhHHHHHHHHHHHhccCCCcchhHHHHHHHHHhc
Confidence 112 3455666555666555433222 2356666665544444555667888899999886
No 87
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=73.85 E-value=1e+02 Score=35.56 Aligned_cols=164 Identities=11% Similarity=0.103 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCC--chHhHHHHHHHHHhCCCc
Q 003155 541 IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ--PCFLYLSSEVIKIFGSDP 618 (843)
Q Consensus 541 ~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~--~~~L~l~~~li~~fg~~~ 618 (843)
+.++..+..++++. ..++.++++...-+-+-..... .=.-+...+++.+...|...|. ...|.++.-+++. |+.|
T Consensus 190 F~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~wiP-l~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L-~~~p 266 (1053)
T COG5101 190 FPQIFGLCKQILEY-SRDESLIEATLESLLRFLEWIP-LDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDL-GRHP 266 (1053)
T ss_pred HHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhh-ccCc
Confidence 45666677777763 4567777665444433332211 1112346788899999988776 5667777766654 5544
Q ss_pred chhHHHHHHHHHHHHHHHHhhc-----cc-------ccC-CcCCchHHHHHHHHHHHHhhCCCcccCcCC---cHHHHHH
Q 003155 619 SCASYLHNLIEALFKRTTCLLT-----SI-------EEF-TSRPDVADDCFLLASRCIRYCPQLFIPSSV---FPSLVDC 682 (843)
Q Consensus 619 ~~~~~l~~~l~~l~~~~~~~l~-----~~-------~~~-~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~---l~~i~~~ 682 (843)
...+.....+...++.+..... .. +++ ....+-+.++-.|+..+...+-..+-..+. +.....+
T Consensus 267 q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~Y 346 (1053)
T COG5101 267 QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGY 346 (1053)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 4444444555555554432221 11 112 233445666666777776665554443322 2233345
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhc
Q 003155 683 SMIGITVQHREASNSILTFLSDIFD 707 (843)
Q Consensus 683 ~~~~l~~~e~~~~~s~~~fl~~li~ 707 (843)
.+.-.++++++..+.++..|.+++.
T Consensus 347 LiqiSrInereiFkt~leyW~klVa 371 (1053)
T COG5101 347 LIQISRINEREIFKTALEYWNKLVA 371 (1053)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHH
Confidence 5555678999999999999999875
No 88
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.64 E-value=23 Score=34.06 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhC-CCcccC--cCCcHHHHHHHHHhccCCCh-hHHHHHHHH
Q 003155 626 NLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC-PQLFIP--SSVFPSLVDCSMIGITVQHR-EASNSILTF 701 (843)
Q Consensus 626 ~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~-p~~~~~--s~~l~~i~~~~~~~l~~~e~-~~~~s~~~f 701 (843)
..+..+..++.+++++ .+++-+-.-..++...++.| +..|.. +..++.++.. ++-+++ .+.++++..
T Consensus 21 ~~l~~l~~ri~~LL~s-----~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~----L~~~~~~~~~~~ai~~ 91 (165)
T PF08167_consen 21 SALHKLVTRINSLLQS-----KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSI----LEKPDPPSVLEAAIIT 91 (165)
T ss_pred HHHHHHHHHHHHHhCC-----CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHHH
Confidence 3455666667777763 34666777778888888988 555544 2334444443 444444 446888888
Q ss_pred HHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHH
Q 003155 702 LSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWA 771 (843)
Q Consensus 702 l~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl 771 (843)
+..++....+ -+++ .+++...+.+.++..++.-+.+ .+..+.+-+.|..+...||.-++.+-
T Consensus 92 L~~l~~~~~~--~p~l---~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 92 LTRLFDLIRG--KPTL---TREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred HHHHHHHhcC--CCch---HHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchH
Confidence 8998875432 2333 5666677777888777765543 56667777888888888886555443
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=73.52 E-value=19 Score=29.92 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=52.2
Q ss_pred HHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcC
Q 003155 360 PQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCG 438 (843)
Q Consensus 360 ~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~ 438 (843)
+.+++.+.+ ..++.+|..+++++|++.+ +.+++.+...+.++ ..|+..|+.++.++-.
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 455555544 3378999999999995531 24455555555543 3499999999998842
Q ss_pred CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 003155 439 YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 472 (843)
Q Consensus 439 ~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig 472 (843)
+..+..+...+..+ -+...|....+++|
T Consensus 61 --~~~~~~L~~~l~~~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDD----DDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-----SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCC----CcHHHHHHHHhhcC
Confidence 22344444555321 12334666777765
No 90
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=72.92 E-value=1.1e+02 Score=36.86 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=85.7
Q ss_pred cCCchHHHHHHHHHHHHhhCCCcc---cCcCCcHHHHHHHHHhccC-CChhHHHHHHHHHHHhhccccCCCchhhHHHHH
Q 003155 647 SRPDVADDCFLLASRCIRYCPQLF---IPSSVFPSLVDCSMIGITV-QHREASNSILTFLSDIFDLAKSCKGEEFLSVRD 722 (843)
Q Consensus 647 ~~pD~~~~~f~l~~~~~~~~p~~~---~~s~~l~~i~~~~~~~l~~-~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~ 722 (843)
..|+.+-.-+.|+..++++.|.-+ ...+.|..++.|. .. .+..++-+|+..+..++=...+ ....+ +.
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L----~~D~~~~~~~~al~~LimlLP~ip~-~l~~~---L~ 151 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL----QFDTSITVVSSALLVLIMLLPHIPS-SLGPH---LP 151 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH----hhcccHHHHHHHHHHHHHHhccccc-hhhHH---HH
Confidence 468889999999999999988654 3466788877774 43 4555678888888888842211 11111 22
Q ss_pred HHHhhhhHHHHHHHHHHcccCCCC-CCcc---------cHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 003155 723 SVIIPRGASITRILIASLTGALPS-SRLE---------TVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFL 792 (843)
Q Consensus 723 ~~~~~~g~~lv~~ll~~l~~~~p~-s~~~---------~~a~iL~~l~~~~~~~~~~wl~~~l~~~P~~~~t~~~~~~f~ 792 (843)
.+|.-|| ..++|.... ..++ .+-..+..|+..||-.|..||++.+..-.+...-++..+.|+
T Consensus 152 ~Lf~If~--------Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr~~y~~~~~~~~~~~~i~p~l 223 (668)
T PF04388_consen 152 DLFNIFG--------RLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLRQHYSSKENFDIFQEVIKPLL 223 (668)
T ss_pred HHHHHHH--------HHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHHHHHhcccChhhHHHHHHHHH
Confidence 3322222 222333311 1111 122256667888999999999965521111112222233444
Q ss_pred HHHHHH---------hcCCCchhhhHHHHHHHHHHhhh
Q 003155 793 QALSEA---------ASGVDVNAAMAPVEELSDVCRRN 821 (843)
Q Consensus 793 ~~l~~~---------~~~~~~~~~~~~~~~F~~~~r~~ 821 (843)
+...-. ......|..|.-..|...-|.+.
T Consensus 224 ~~~~lHP~l~t~t~e~Eld~~RW~~~E~~dvv~eC~~l 261 (668)
T PF04388_consen 224 QQHRLHPNLVTSTIESELDPTRWKKMEPHDVVAECMSL 261 (668)
T ss_pred HHHccCHHhCcCChhhccChhhhhcCCHHHHHHHHHhc
Confidence 442100 11122344444566777777764
No 91
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=72.68 E-value=1.2e+02 Score=31.38 Aligned_cols=134 Identities=14% Similarity=0.159 Sum_probs=77.6
Q ss_pred CCcchhhHHHHHHHHhhccCCCc----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 003155 332 NEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l 407 (843)
.+---.|.++++++..+..-... +...++-+...+.. | +|.++..+++++...+.--.....-..|++.+..-+
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p-~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-P-NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-C-ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 44445689999998765532211 12333434434433 4 789999999999877653332221113555555554
Q ss_pred HhccCCCHHHHHHHHHHHHHHH--HHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 408 TSGMSTSEDTAAAAALAFRHIC--DDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 408 ~~~l~~~~~v~~~A~~a~~~lc--~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
...--+.+ ++.++-.++.+++ .+..+.+.++++.++..+ ..+ +...+..+...+..+...
T Consensus 103 ~s~~lns~-~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL----~~G-----~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 103 VSSPLNSE-VQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLL----SSG-----SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred hcCCCCCH-HHHHHHHHHHccCCCcchhhhHHhhHHHHHHHH----HcC-----ChHHHHHHHHHHHHhccC
Confidence 44322445 8999999999886 334456677888776443 221 234566666666655543
No 92
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.67 E-value=46 Score=32.42 Aligned_cols=129 Identities=12% Similarity=0.127 Sum_probs=82.2
Q ss_pred CCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhh
Q 003155 648 RPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIP 727 (843)
Q Consensus 648 ~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~ 727 (843)
||.++....-.++.+..++|..+ +..++....++.-+++..-+.|+..++.++... ++.-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v------e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--------------~ik~ 60 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV------EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED--------------MIKV 60 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------------ceee
Confidence 46777777777788888888753 445555556688888888899999999999621 0011
Q ss_pred hhHHHHHHHHHHcccCCCCCCcccHHH-HHHHHHHH-hhHHHHHHHHHHHhhCCCC-------CCCHHHHHHHHHHHHHH
Q 003155 728 RGASITRILIASLTGALPSSRLETVTY-ALLALTRA-YGVRSLEWAKESVSLIPLT-------ALAEVERSRFLQALSEA 798 (843)
Q Consensus 728 ~g~~lv~~ll~~l~~~~p~s~~~~~a~-iL~~l~~~-~~~~~~~wl~~~l~~~P~~-------~~t~~~~~~f~~~l~~~ 798 (843)
.| .++..++..+.+ +...+...|. .|..+..+ .|+.+.+.+.+++..+... ..+.+.+.+.++-++..
T Consensus 61 k~-~l~~~~l~~l~D--~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~ 137 (178)
T PF12717_consen 61 KG-QLFSRILKLLVD--ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDF 137 (178)
T ss_pred hh-hhhHHHHHHHcC--CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHH
Confidence 11 223345555543 3334454444 45555555 6777778787777544321 46788888888888876
Q ss_pred h
Q 003155 799 A 799 (843)
Q Consensus 799 ~ 799 (843)
.
T Consensus 138 i 138 (178)
T PF12717_consen 138 I 138 (178)
T ss_pred c
Confidence 4
No 93
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.45 E-value=2.3e+02 Score=34.03 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=121.3
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcc-hhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHH
Q 003155 579 FMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPS-CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFL 657 (843)
Q Consensus 579 ~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~-~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~ 657 (843)
.+.|++..++..+..++....-..==|+...+...++-.++ +.+....++..+.+.+...-++ -++|-.-+-.|+
T Consensus 541 ~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN----Ps~P~fnHYLFE 616 (960)
T KOG1992|consen 541 DIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKN----PSNPQFNHYLFE 616 (960)
T ss_pred hcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC----CCCchhHHHHHH
Confidence 45566665666555555544334434556666666664432 3345555565555555544443 256777777777
Q ss_pred HHHHHHhh----CCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHh-------
Q 003155 658 LASRCIRY----CPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVII------- 726 (843)
Q Consensus 658 l~~~~~~~----~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~------- 726 (843)
-+..++++ .|+.+.+ .-..++..-..-+.-.=.+-.-.+++.+..++..+.+.-.+.|...+.-+++
T Consensus 617 si~~li~~t~~~~~~~vs~--~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~ 694 (960)
T KOG1992|consen 617 SIGLLIRKTCKANPSAVSS--LEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRS 694 (960)
T ss_pred HHHHHHHHHhccCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhc
Confidence 76666653 2333211 1112221111111111123345788888888875543333456555554443
Q ss_pred hhhHHHHHHHHHHcccCCCCCCc--ccHHHHHHHHHHHhh----HHHHHH-HHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 003155 727 PRGASITRILIASLTGALPSSRL--ETVTYALLALTRAYG----VRSLEW-AKESVSLIPLTALAEVERSRFLQALSEAA 799 (843)
Q Consensus 727 ~~g~~lv~~ll~~l~~~~p~s~~--~~~a~iL~~l~~~~~----~~~~~w-l~~~l~~~P~~~~t~~~~~~f~~~l~~~~ 799 (843)
..-+.+|+ ++.++...-+.... +.+..+|.-+.+.-+ ++..=+ |.+.++.+|...+.+-.|+-|...+.|.+
T Consensus 695 gNipalvr-Ll~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlq 773 (960)
T KOG1992|consen 695 GNIPALVR-LLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQ 773 (960)
T ss_pred CCcHHHHH-HHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHh
Confidence 23466666 55666444443333 446666666655444 333333 44566788877678888999988888876
Q ss_pred cCCCchhhhHHHHHH
Q 003155 800 SGVDVNAAMAPVEEL 814 (843)
Q Consensus 800 ~~~~~~~~~~~~~~F 814 (843)
+.|.. ||-..+.-|
T Consensus 774 nskT~-kf~k~~~vF 787 (960)
T KOG1992|consen 774 NSKTE-KFVKSFIVF 787 (960)
T ss_pred ccCcH-HHHHHHHHH
Confidence 54433 443333333
No 94
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=69.43 E-value=20 Score=34.42 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhc
Q 003155 373 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 452 (843)
Q Consensus 373 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~ 452 (843)
-.+|+++.+++...-+-...+- -+..++..+..|+.+..++..-+..-+.+++..+...+.+.++.+++.+...++
T Consensus 41 LelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999987765222222 366778889999988767999999999999999999999889999888888875
Q ss_pred c
Q 003155 453 G 453 (843)
Q Consensus 453 ~ 453 (843)
.
T Consensus 117 ~ 117 (169)
T PF08623_consen 117 K 117 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 95
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=68.89 E-value=2.3e+02 Score=32.93 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
.+...+-+...|.+|..+| |+ +-...++.++.-..+. ..|+..|-..|-.+|++-. .|+.-+.+++.++
T Consensus 35 ~~k~K~Laaq~I~kffk~F---P~---l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHF---PD---LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQL 104 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC----GG---GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC---hh---hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHH
Confidence 3556666677777665443 54 5667777766655443 2377777777777777633 2445555555566
Q ss_pred hcc
Q 003155 451 VNG 453 (843)
Q Consensus 451 ~~~ 453 (843)
++.
T Consensus 105 L~t 107 (556)
T PF05918_consen 105 LQT 107 (556)
T ss_dssp TT-
T ss_pred Hhc
Confidence 643
No 96
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=66.36 E-value=2.8e+02 Score=33.03 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=85.0
Q ss_pred hhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc--c----------cchHHHhhhccCCCCc
Q 003155 305 SVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--A----------EVMPQVMALLPKLPQQ 372 (843)
Q Consensus 305 ~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~--~----------~~l~~l~~~l~~lp~~ 372 (843)
..+.+ .+++.+...+...+++.+......-+.--.+.++++.+.+..... . ..+..++..+...+..
T Consensus 632 ~litp-l~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~ 710 (980)
T KOG2021|consen 632 TLITP-LILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKF 710 (980)
T ss_pred cccCh-HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhcccc
Confidence 44554 366666555555554332223445556667888889998887652 1 1122233333333434
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 373 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 373 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~--~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
..+|.+.-.+++|.-.-+...- ..++|.++..+++..+-.+ +.-.--...+.++=.+|...+-..++.++..+.++
T Consensus 711 E~iRsavrft~hRmI~~lg~~v--lPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsv 788 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPILGNKV--LPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSV 788 (980)
T ss_pred chhHHHHHHHHHHHHHhcchhh--hcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777787776664321 1278888887766543222 23344555566666777777767777777777777
Q ss_pred hcc
Q 003155 451 VNG 453 (843)
Q Consensus 451 ~~~ 453 (843)
+.+
T Consensus 789 i~r 791 (980)
T KOG2021|consen 789 IER 791 (980)
T ss_pred hcc
Confidence 753
No 97
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.79 E-value=1.3e+02 Score=29.39 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc-------------CCHHH----HHHHHH---HhhcccCCCCCChhhHHHHHHHHHHHH
Q 003155 416 DTAAAAALAFRHICDDCRKKLC-------------GYLDG----LYNVYR---TAVNGEGSLKVSAEDSLHLVEALSMVI 475 (843)
Q Consensus 416 ~v~~~A~~a~~~lc~~c~~~l~-------------~~~~~----li~~~~---~~~~~~~~~~l~~~~~~~l~eaig~vi 475 (843)
+++.+|+.++..+-+.++..|. |+-.. +.+... ..+..+ -.......++++++.++
T Consensus 55 kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK~la~Lv 130 (182)
T PF13251_consen 55 KVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLKCLAVLV 130 (182)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHHHH
Confidence 5899999999888777654332 33222 222222 223321 12345667999999999
Q ss_pred hcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhc
Q 003155 476 TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 530 (843)
Q Consensus 476 ~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 530 (843)
+.-|.++... .++.+++..+...+...+. ......+.++++++..
T Consensus 131 ~~tPY~rL~~---~ll~~~v~~v~~~l~~~d~-------~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 131 QATPYHRLPP---GLLTEVVTQVRPLLRHRDP-------NVRVAALSCLGALLSV 175 (182)
T ss_pred ccCChhhcCH---hHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHcC
Confidence 9999887653 5566677777777765321 1123336677776654
No 98
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=64.49 E-value=1e+02 Score=27.20 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=57.7
Q ss_pred HHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 003155 488 EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 567 (843)
Q Consensus 488 ~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~ 567 (843)
+.-+-.+++.+.+.+..... +....+-...+..|+.+++..+ ..+-.+.-|++-.+...+ ...++.+.+++
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~---~~~~~ek~~~l~si~~lI~~~~--~~i~~~~pQI~a~L~sal----~~~~l~~~al~ 76 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRG---KKPIPEKKRALRSIEELIKLGG--SHISSARPQIMACLQSAL----EIPELREEALS 76 (107)
T ss_pred HHHHHHHHHHHHHHHhcccc---CCCHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHh----CChhhHHHHHH
Confidence 33333445555555554110 1111222344777777777322 223334455565555555 34578899999
Q ss_pred HHHHHHHhhh-hhhhhhHHHHHHHHHHHH
Q 003155 568 ACKYAVRTSK-RFMGITIGAILEEIQGLY 595 (843)
Q Consensus 568 ~l~~~i~~~~-~~~~p~l~~l~~~l~~~~ 595 (843)
++...++.+. +++.|+++.++..+...+
T Consensus 77 ~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 77 CWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999875 467788887776666543
No 99
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=63.11 E-value=2.4e+02 Score=31.10 Aligned_cols=123 Identities=9% Similarity=0.112 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCc------hHhHHHHHHHHHhCCC-cchh--HHHHHHHHHHHH
Q 003155 563 ESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP------CFLYLSSEVIKIFGSD-PSCA--SYLHNLIEALFK 633 (843)
Q Consensus 563 e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~------~~L~l~~~li~~fg~~-~~~~--~~l~~~l~~l~~ 633 (843)
.++|.+++...+..+..+.+.+...++.+++.|...+.. +.+++++.+..+-... .++. +.+.++..-+.+
T Consensus 229 ~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~ 308 (370)
T PF08506_consen 229 RAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQ 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHH
Confidence 478888888888888888888888888888888776643 4566666655442110 0000 122233333333
Q ss_pred HHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCCh
Q 003155 634 RTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHR 692 (843)
Q Consensus 634 ~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~ 692 (843)
.++.-|+ .+...+|=++.+.+.++..+-...| .+.+..+++..+..+..++.
T Consensus 309 ~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~-----~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 309 HVLPELQ--PDVNSHPILKADAIKFLYTFRNQLP-----KEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS------HHHHHHHHHHHHHHTTSS-H
T ss_pred HhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHhCCCCc
Confidence 4444444 2345678788888888877766533 34566777777777776554
No 100
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.79 E-value=3.7e+02 Score=33.10 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=61.1
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc--------ccchHHHhhh-c
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--------AEVMPQVMAL-L 366 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~--------~~~l~~l~~~-l 366 (843)
+.|-+-.+++++| +.+-..++..+...+.... +.+--..-++-+|+.+|+..+..+. .+++.+-+.. +
T Consensus 568 ~ld~I~~~a~~~g-~~F~~~L~~~ly~vl~k~a--~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L 644 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMG-EEFQPELMDYLYPVLEKLA--SPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRL 644 (1014)
T ss_pred hhhhhHHHHHHhH-HHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHh
Confidence 3355566778888 5677777766666554322 2222234578888888988887642 1222222222 2
Q ss_pred cCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC
Q 003155 367 PKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS 412 (843)
Q Consensus 367 ~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~ 412 (843)
...+.||++- -.+.++++|++.=. -| ++..++..++..++
T Consensus 645 ~~~~~s~~~~-~Vl~vVl~~s~~~~-i~----~l~dvvq~i~~~lD 684 (1014)
T KOG4524|consen 645 NTSGMSPRVP-DVLMVVLQYSDYGT-IP----NLKDVVQTIFKLLD 684 (1014)
T ss_pred ccCCCCchhH-HHHHHHhhcCCCCc-hh----hHHHHHHHHHHHHH
Confidence 2245566554 35677788875311 12 67777776665554
No 101
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=62.35 E-value=2.2e+02 Score=30.32 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCCCc--cccchHHHhhhc--cCCC-CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC-C
Q 003155 340 ALFCIRAISTYVSVV--EAEVMPQVMALL--PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-T 413 (843)
Q Consensus 340 ~L~~l~~iae~~~~~--~~~~l~~l~~~l--~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~-~ 413 (843)
||+..+.+-+.+... ++..+..+++.| +.+. .++.+|..++.++|-|+-.=. + +-...+..+...+. +
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~---~a~~~l~l~~~~~~~~ 76 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---E---LAKEHLPLFLQALQKD 76 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---H---HHHHHHHHHHHHHHhC
Confidence 344455555555422 223445666553 3443 368999999999999875322 1 22333334433332 2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhcC---------CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 414 SEDTAAAAALAFRHICDDCRKKLCG---------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 414 ~~~v~~~A~~a~~~lc~~c~~~l~~---------~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
+..++..|..++..+...-+..... ....+++.+...+.. ...+.+..+.||++.++-.
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-----ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhc
Confidence 3348999999998888765543332 234577777777753 1467888899999998754
No 102
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=58.45 E-value=1.5e+02 Score=28.22 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 402 SVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 402 ~vl~~l~~~l~~~~--~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
-+++.+.+-+.++. .....+..|+..+.+.-+...+||++.++..+..++.. .+...+..++.-++.++.-
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-----~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-----CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-----CCHHHHHHHHHHHHHHHHH
Confidence 44455656565553 13357888888888776667789999999998888763 2345666677777777653
No 103
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=58.38 E-value=1.6e+02 Score=35.84 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=54.6
Q ss_pred hHHHHHHHHhhccCCCc---cccchHHHhhhccCCC---C-c-HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 003155 338 EAALFCIRAISTYVSVV---EAEVMPQVMALLPKLP---Q-Q-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 409 (843)
Q Consensus 338 Ea~L~~l~~iae~~~~~---~~~~l~~l~~~l~~lp---~-~-~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~ 409 (843)
+.-+..+..+...+... .++++..+++.+.+++ + + -.||.+++.+++...+++... .-..|-+.|+..+.+
T Consensus 924 ~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~-~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 924 IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK-SLLSFRPLVLRALIK 1002 (1030)
T ss_pred chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc-ccccccHHHHHHhhh
Confidence 33333444444443333 3466777888876664 1 2 589999999999999877532 111267889999999
Q ss_pred ccCCCHH-HHHHHH
Q 003155 410 GMSTSED-TAAAAA 422 (843)
Q Consensus 410 ~l~~~~~-v~~~A~ 422 (843)
.|+++++ |+..|.
T Consensus 1003 ~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 1003 ILDDKKRLVRKEAV 1016 (1030)
T ss_pred ccCcHHHHHHHHHH
Confidence 9999875 444443
No 104
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=57.57 E-value=2.7e+02 Score=29.81 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh--hhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHh
Q 003155 399 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 399 ~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~--~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~ 476 (843)
....+|.-|+++++++.-++...-.++..+|.+|+. .+.|.+..+=+.+.. ++.+.+++..++.++..++.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lke-------w~~~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKE-------WNISVEDQRELLRAVHKALK 176 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 566788888899988754888899999999999984 456666665544433 46788999999999999887
Q ss_pred cC
Q 003155 477 EL 478 (843)
Q Consensus 477 ~~ 478 (843)
.-
T Consensus 177 ~~ 178 (378)
T KOG2753|consen 177 DN 178 (378)
T ss_pred hc
Confidence 54
No 105
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.56 E-value=4.3e+02 Score=31.86 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=60.7
Q ss_pred CChhhHHHHHHHHHHHHhcCCH-------HH-----------HHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHH
Q 003155 459 VSAEDSLHLVEALSMVITELPQ-------VD-----------AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 520 (843)
Q Consensus 459 l~~~~~~~l~eaig~vi~~~p~-------~~-----------~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~ 520 (843)
.+.+.+-.+|+|+..+++--.+ .+ ..+.+..++..++.-+-+++..... .+.+ ...
T Consensus 519 ~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e----~Dtk--~~V 592 (978)
T KOG1993|consen 519 QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE----CDTK--TSV 592 (978)
T ss_pred chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh----hhhH--HHH
Confidence 3466777788887777764310 00 1233333444444444444443321 1222 233
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003155 521 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGIT 583 (843)
Q Consensus 521 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~ 583 (843)
++.+++++...+. + ..++..++...+..+=+-....+-+.-++...+++.++++|....++
T Consensus 593 L~~ls~lI~r~~e-~-I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~ 653 (978)
T KOG1993|consen 593 LNLLSTLIERVSE-H-IAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF 653 (978)
T ss_pred HHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence 6778887765442 1 11344444444433333333444567788899999999988754433
No 106
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=55.24 E-value=3.5e+02 Score=30.39 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=25.4
Q ss_pred HHHHhhhhHHHHHHHHHHcccCC----CCCCcccHHHHHHHHHHHhhHHHHH
Q 003155 722 DSVIIPRGASITRILIASLTGAL----PSSRLETVTYALLALTRAYGVRSLE 769 (843)
Q Consensus 722 ~~~~~~~g~~lv~~ll~~l~~~~----p~s~~~~~a~iL~~l~~~~~~~~~~ 769 (843)
-.++..+...++..++.++-... .+........++..|....|..+.+
T Consensus 327 ~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 327 LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 34555566666666666653222 2233334445666666666665555
No 107
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=54.80 E-value=16 Score=29.74 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHhhccCCCc----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHH
Q 003155 336 PAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 388 (843)
Q Consensus 336 ~~Ea~L~~l~~iae~~~~~----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~ 388 (843)
++-++|||++.|+..-..- +.+.++.+++...+-| ...+|-|+++++|-.+.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhC
Confidence 4679999999998753221 2344555555443333 67899999999997653
No 108
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.07 E-value=5e+02 Score=31.59 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc---C--CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q 003155 416 DTAAAAALAFRHICDDCRKKLC---G--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEM 489 (843)
Q Consensus 416 ~v~~~A~~a~~~lc~~c~~~l~---~--~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~-~~~~l~~ 489 (843)
++...||.|+..+|+-|..... . -++.+++.+..+- - .+.....++|+=.+-+.-|.+- +...+..
T Consensus 227 DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie------y--iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a 298 (1051)
T KOG0168|consen 227 DIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE------Y--IDVAEQSLQALEKISRRHPKAILQAGALSA 298 (1051)
T ss_pred HHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh------h--hHHHHHHHHHHHHHHhhccHHHHhcccHHH
Confidence 4999999999999999986443 3 3666666655442 1 1223334444444444333221 0011111
Q ss_pred hhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 003155 490 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 569 (843)
Q Consensus 490 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l 569 (843)
.+..+ . .-.+ .++..+ |...+.+.+.+.. +. ..++-+..|++..+++. .|...+|.+|.|+
T Consensus 299 ~Lsyl-D-FFSi-----------~aQR~A--laiaaN~Cksi~s-d~-f~~v~ealPlL~~lLs~--~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 299 VLSYL-D-FFSI-----------HAQRVA--LAIAANCCKSIRS-DE-FHFVMEALPLLTPLLSY--QDKKPIESVCICL 359 (1051)
T ss_pred HHHHH-H-HHHH-----------HHHHHH--HHHHHHHHhcCCC-cc-chHHHHHHHHHHHHHhh--ccchhHHHHHHHH
Confidence 11000 0 0000 001111 2223333333322 21 22455668999888864 4677899999999
Q ss_pred HHHHHhhh
Q 003155 570 KYAVRTSK 577 (843)
Q Consensus 570 ~~~i~~~~ 577 (843)
-+++..+.
T Consensus 360 ~ri~d~f~ 367 (1051)
T KOG0168|consen 360 TRIADGFQ 367 (1051)
T ss_pred HHHHHhcc
Confidence 99987753
No 109
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=52.85 E-value=3.2e+02 Score=29.27 Aligned_cols=66 Identities=17% Similarity=0.378 Sum_probs=44.7
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchH
Q 003155 458 KVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV 537 (843)
Q Consensus 458 ~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 537 (843)
+.+..+-..++.+|++++...|+++..+.+.+++.-+ .++... .. ....++.|+.+|.+++.++|+
T Consensus 57 k~~ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~ekv-------a~q~n~----~~---~~l~L~vLsnLfn~~d~~~~a 122 (378)
T KOG2753|consen 57 KIPEKDLECVLNSIVSLIKNAPPEKVEEMVKAICEKV-------AKQPND----KT---ASLRLQVLSNLFNGVDKPTPA 122 (378)
T ss_pred cCCcchHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHH-------hcCccC----CC---cccHHHHHHHHHhccCCCchH
Confidence 4556677889999999999999888887777765433 332211 11 112378899999888877763
No 110
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.54 E-value=5.3e+02 Score=31.48 Aligned_cols=148 Identities=11% Similarity=0.195 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh-ccC--CCHHHHHHHHHHHHHHHHHhhh---hhcCCHHHH
Q 003155 370 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS-GMS--TSEDTAAAAALAFRHICDDCRK---KLCGYLDGL 443 (843)
Q Consensus 370 p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~-~l~--~~~~v~~~A~~a~~~lc~~c~~---~l~~~~~~l 443 (843)
|+|-....+++..+-.|++.+...-+ ..++..+....+ .+. ++. +...+...+-.+|.-... .+.|+++.+
T Consensus 478 p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~q-l~~Tss~~igs~s~~l~e~P~~ln~sl~~L 554 (982)
T KOG2022|consen 478 PDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQ-LLSTSSDLIGSLSNWLGEHPMYLNPSLPLL 554 (982)
T ss_pred chHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChh-HHHHHHHHHHHHHHHHhcCCcccCchHHHH
Confidence 33456778888889999988876543 356666665542 122 344 777777777777765554 345777777
Q ss_pred HHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHH
Q 003155 444 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDR 523 (843)
Q Consensus 444 i~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 523 (843)
++.+.+. + .+. ....++-.+. +++..-|.....+++.-....++.... ...+....+..
T Consensus 555 ~~~Lh~s-------k---~s~-q~i~tl~tlC-----~~C~~~L~py~d~~~a~~~e~l~~~~~-----~~S~~~klm~s 613 (982)
T KOG2022|consen 555 FQGLHNS-------K---ESE-QAISTLKTLC-----ETCPESLDPYADQFSAVCYEVLNKSNA-----KDSDRLKLMKS 613 (982)
T ss_pred HHHhcCc-------h---HHH-HHHHHHHHHH-----HhhhhhCchHHHHHHHHHHHHhccccc-----CchHHHHHHHH
Confidence 7665321 1 111 1122222222 234444555556666666666654321 12234555788
Q ss_pred HHHhhhccCCcchHHHHHH
Q 003155 524 FAYIFRYVNHPEAVADAIQ 542 (843)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~ 542 (843)
++.+.+.+. |+-...++-
T Consensus 614 IGyvls~~~-pEe~~kyl~ 631 (982)
T KOG2022|consen 614 IGYVLSRLK-PEEIPKYLM 631 (982)
T ss_pred HHHHHHhcc-HHhHHHHHH
Confidence 998888776 444333433
No 111
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=51.23 E-value=4e+02 Score=29.98 Aligned_cols=152 Identities=8% Similarity=0.044 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhh
Q 003155 438 GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL 517 (843)
Q Consensus 438 ~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~ 517 (843)
.|+..|+..+.+++.. .-+...+...+..++-++...|. .+.+...-.+.+.+........ .-.
T Consensus 325 q~f~~iL~~l~EvL~d----~~~~~~k~laLrvL~~ml~~Q~~--------~l~DstE~ai~K~Leaa~ds~~----~v~ 388 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSD----SEDEIIKKLALRVLREMLTNQPA--------RLFDSTEIAICKVLEAAKDSQD----EVM 388 (516)
T ss_pred HHHHHHHHHHHHHHcc----chhhHHHHHHHHHHHHHHHhchH--------hhhchHHHHHHHHHHHHhCCch----hHH
Confidence 5677777777777752 12344555567777777766543 1222222233344433322110 011
Q ss_pred HHHH-HHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHH
Q 003155 518 TVHI-DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS-KRFMGITIGAILEEIQGLY 595 (843)
Q Consensus 518 ~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~-~~~~~p~l~~l~~~l~~~~ 595 (843)
..+- +++..+... +| ...+..+.|++.. .|....-.+.+++.++++.+ .+.+.+++|.+++.++++|
T Consensus 389 ~~Aeed~~~~las~----~P-~~~I~~i~~~Ilt------~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay 457 (516)
T KOG2956|consen 389 RVAEEDCLTTLASH----LP-LQCIVNISPLILT------ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY 457 (516)
T ss_pred HHHHHHHHHHHHhh----Cc-hhHHHHHhhHHhc------CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh
Confidence 1112 222222221 22 1133344444433 34555455666777777664 4567889999999999999
Q ss_pred hhcCCc---hHhHHHHHHHHHhCC
Q 003155 596 QQHQQP---CFLYLSSEVIKIFGS 616 (843)
Q Consensus 596 ~~~~~~---~~L~l~~~li~~fg~ 616 (843)
...... +..+++-.++...|.
T Consensus 458 ~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 458 DSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred cCchHHhhhhHHHhHHHHHHHHhH
Confidence 875432 678888889999883
No 112
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=49.23 E-value=5.8e+02 Score=31.25 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 417 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 417 v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
++.++...+.+.|-.-. +..+-.++++-.+...... .-+.+++..++++++.+|..-+
T Consensus 509 ~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl~~~as----~~~~~e~~~ll~~i~rii~~~~ 566 (947)
T COG5657 509 TREAYSTIFDDWNFSVC-SKIGLLENLILLVLSLMAS----PSSLEEREFLLQLISRIIIIDP 566 (947)
T ss_pred HHHHHHHHHHhcccccc-cccccHHHHHHHHHHhcCC----cchhHHHHHHHHHHHHHHHhCH
Confidence 44555555555543211 3445667777666666543 2246789999999999998753
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=48.77 E-value=5e+02 Score=30.31 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhhh
Q 003155 556 AWDMRTMESLCRACKYAVRTSK 577 (843)
Q Consensus 556 ~~~~~i~e~~~~~l~~~i~~~~ 577 (843)
..++.++|++..+++.-+..++
T Consensus 144 ~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 144 SGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HS-HHHHHHHHHHHHHHGGGS-
T ss_pred cCchHHHHHHHHHHHHHHhhCc
Confidence 3566678887777765554443
No 114
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=47.96 E-value=1.8e+02 Score=24.91 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003155 415 EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 489 (843)
Q Consensus 415 ~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~ 489 (843)
+ ++.+|-..++++.++.. .-+..++.++..+...+..+ ++...+..+.|++.++..-|.+-....++.
T Consensus 18 P-vRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 18 P-VRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred c-hHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 5 88999999999998766 34456788888888887532 355788899999999998876444444433
No 115
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=47.66 E-value=2e+02 Score=25.42 Aligned_cols=72 Identities=11% Similarity=0.219 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHH
Q 003155 518 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLY 595 (843)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~-~~~~p~l~~l~~~l~~~~ 595 (843)
...+..|+.+++..+ ..+-...-|++-.+...+ ..+++.+.+++|++..++.+. +++.|++..++..+.+.+
T Consensus 33 ~~~i~ai~~lI~~~g--~~i~~a~pQI~acL~saL----~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 33 KRALRSIGFLIKLMG--KHISSALPQIMACLQSAL----EIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 344677777777433 233344456666666555 356789999999999998865 466777776666655443
No 116
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.06 E-value=6e+02 Score=30.72 Aligned_cols=248 Identities=10% Similarity=0.057 Sum_probs=129.1
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 003155 518 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 597 (843)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~ 597 (843)
..++..++.+++ |+ ....+.|-++.+++. .++-|+.++.-|..+.+|.....+.-|++.....+..
T Consensus 125 glAL~alg~i~s----~E----mardlapeVe~Ll~~--~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~e---- 190 (866)
T KOG1062|consen 125 GLALCALGNICS----PE----MARDLAPEVERLLQH--RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCE---- 190 (866)
T ss_pred HHHHHHhhccCC----HH----HhHHhhHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhh----
Confidence 444666666653 23 345566777777765 5677888888888888876544444444433333322
Q ss_pred cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHh-hCCCcc----cC
Q 003155 598 HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR-YCPQLF----IP 672 (843)
Q Consensus 598 ~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~-~~p~~~----~~ 672 (843)
.+|+-.+..+..+.......+ +..+.+-|++.+|+..+.++.. .+|... ++
T Consensus 191 k~hGVL~~~l~l~~e~c~~~~------------------------~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~ 246 (866)
T KOG1062|consen 191 KHHGVLIAGLHLITELCKISP------------------------DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGIS 246 (866)
T ss_pred cCCceeeeHHHHHHHHHhcCH------------------------HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCC
Confidence 122222222222222121111 1112223467777777766664 333332 23
Q ss_pred cCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccH
Q 003155 673 SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETV 752 (843)
Q Consensus 673 s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~ 752 (843)
.|+++--+--.+.-+...+.++.......|.+..+...++++ -|..+++.++..+..=-|.+.+...
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN-------------~GnAILYE~V~TI~~I~~~~~Lrvl 313 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKN-------------AGNAILYECVRTIMDIRSNSGLRVL 313 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccccc-------------chhHHHHHHHHHHHhccCCchHHHH
Confidence 455553333334556678888888888999998876544332 3556666666666654555555443
Q ss_pred -HHHHHHHHHH-------------------hhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHH
Q 003155 753 -TYALLALTRA-------------------YGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVE 812 (843)
Q Consensus 753 -a~iL~~l~~~-------------------~~~~~~~wl~~~l~~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~ 812 (843)
+.||.++... -|+...+.=..+++-+-. ....-|.+=+.-.+..-+..|.+-.-+-+-
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~D--pD~SIkrralELs~~lvn~~Nv~~mv~eLl 391 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKD--PDVSIKRRALELSYALVNESNVRVMVKELL 391 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3455555332 122222222222222222 234444444444444434466766666677
Q ss_pred HHHHHH
Q 003155 813 ELSDVC 818 (843)
Q Consensus 813 ~F~~~~ 818 (843)
+|...|
T Consensus 392 ~fL~~~ 397 (866)
T KOG1062|consen 392 EFLESS 397 (866)
T ss_pred HHHHhc
Confidence 777777
No 117
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=45.47 E-value=3e+02 Score=26.90 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC-cchHHHH
Q 003155 462 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADA 540 (843)
Q Consensus 462 ~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~ 540 (843)
.-+.-..+|+--++..-..+...+.+-+++.|+-..|.. .. ..-....+++|..++.+... ++...++
T Consensus 53 Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t----r~-------~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 53 PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT----RD-------PEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC----CC-------HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 346667778888887755567788888888777555443 21 12234457777777554322 3556788
Q ss_pred HHHHHHHHHHHHHh
Q 003155 541 IQRLWPIFKAIFDI 554 (843)
Q Consensus 541 ~~~~~~~l~~il~~ 554 (843)
+.++.|++.-...+
T Consensus 122 yrqLLp~ln~f~~k 135 (183)
T PF10274_consen 122 YRQLLPVLNLFKNK 135 (183)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888754443
No 118
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=44.86 E-value=3.8e+02 Score=27.81 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhh----hhhcC----CHHHHHHHHHHhhcccCCCCCChhhHHH--HHHHHHHHHhcCCHHHHHHH
Q 003155 417 TAAAAALAFRHICDDCR----KKLCG----YLDGLYNVYRTAVNGEGSLKVSAEDSLH--LVEALSMVITELPQVDAKKA 486 (843)
Q Consensus 417 v~~~A~~a~~~lc~~c~----~~l~~----~~~~li~~~~~~~~~~~~~~l~~~~~~~--l~eaig~vi~~~p~~~~~~~ 486 (843)
.-..+..+|..+|+.|. +.+.. |++.+++.+..-- .... .-.|.. +=-.+..++.+.|....
T Consensus 113 Afe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~----~~~~-~iTRRSAGLP~~i~aiL~ae~~~~~--- 184 (255)
T PF10350_consen 113 AFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKG----QQKL-SITRRSAGLPFLILAILSAEPSNSR--- 184 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhccc----cccc-ccccccCcHHHHHHHHHhcCCCcch---
Confidence 78899999999999988 33332 4444554443320 0000 011111 33345555666554333
Q ss_pred HHHhhhHHHHHHHHHHhcCCccccccCchh-hHHHHHHHHHhhhccCCcchHHHHHHHHH
Q 003155 487 LEMLCLPVVTPLQEIINQGPEILQKKHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLW 545 (843)
Q Consensus 487 l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 545 (843)
.++...+..|-++........+...... -+..+++|..+|+.-+-.+.+.+++.+.+
T Consensus 185 --~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l 242 (255)
T PF10350_consen 185 --PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDAL 242 (255)
T ss_pred --hHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4455556666666654432211111011 23458999999987443334444544433
No 119
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.76 E-value=8.3e+02 Score=31.73 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=109.1
Q ss_pred HHHHHHhhhccCC--cchHHHHHHHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHH
Q 003155 521 IDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIFDIRA---WDMRTMESLCRACKYAVRTSKRFM---GITIGAILEEIQ 592 (843)
Q Consensus 521 l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~il~~~~---~~~~i~e~~~~~l~~~i~~~~~~~---~p~l~~l~~~l~ 592 (843)
+++|..++..+.. .++ ...+.+.|+...+...+- .|.+|.--+.-|+..++|.+.++. ...+-.++..++
T Consensus 23 l~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~ 100 (1266)
T KOG1525|consen 23 LKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLIL 100 (1266)
T ss_pred HHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 4555555554432 122 355677777777665431 244455555666778888876542 334455555555
Q ss_pred HHHhhcCCchHhHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHh-hCCCcc
Q 003155 593 GLYQQHQQPCFLYLSSEVIKIFGSDP-SCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR-YCPQLF 670 (843)
Q Consensus 593 ~~~~~~~~~~~L~l~~~li~~fg~~~-~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~-~~p~~~ 670 (843)
..|.. .|+.. .+...-..+++.+...-+.++- ...+..|++.++|+++-.+++ .+|..+
T Consensus 101 ~q~~g----------------L~d~~sp~f~r~~~lletl~~~k~~l~~---~l~d~~e~~~~~f~~f~d~~~~~~~~~v 161 (1266)
T KOG1525|consen 101 SQFSG----------------LGDVESPYFKRYFYLLETLAKVKFCLLM---LLEDCQELVHELFRTFFDLARKGHPKKV 161 (1266)
T ss_pred HHHhh----------------ccCCCCcchhhHHHHHHHHHHhHHHhee---eccchHHHHHHHHHHHHHHHhccccHHH
Confidence 44432 11110 0111111233333322233332 234566788888888888885 566654
Q ss_pred cCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhh----HHHHHHHHHHcccCCC-
Q 003155 671 IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRG----ASITRILIASLTGALP- 745 (843)
Q Consensus 671 ~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g----~~lv~~ll~~l~~~~p- 745 (843)
+. +.+.+..-+..-+.-.....--.|.++++..++. .++-......++...+ ..+-+.+...++...+
T Consensus 162 ~~------~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~-~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~ 234 (1266)
T KOG1525|consen 162 FN------MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDT-IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSR 234 (1266)
T ss_pred HH------HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCc-cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhcccc
Confidence 43 3444433333333333333444556666533221 1111111112222111 1222233334444333
Q ss_pred -CCCcccHHHHHHHHHHHhhHHHHHHHHH
Q 003155 746 -SSRLETVTYALLALTRAYGVRSLEWAKE 773 (843)
Q Consensus 746 -~s~~~~~a~iL~~l~~~~~~~~~~wl~~ 773 (843)
.+....+-++++.|+...|+.+..-+.+
T Consensus 235 ~~~~~~~~he~i~~L~~~~p~ll~~vip~ 263 (1266)
T KOG1525|consen 235 QSSLKIKYHELILELWRIAPQLLLAVIPQ 263 (1266)
T ss_pred ccchhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3566788899999999998765554443
No 120
>PRK09687 putative lyase; Provisional
Probab=44.50 E-value=1.4e+02 Score=31.63 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=54.1
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|.-+..+.++|+.+.. +.....+.++..+. ..++.||..+.+.+|++. ++ .+++.|.+.
T Consensus 170 d~~~~VR~~A~~aLg~~~~----~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~-----~~-------~av~~Li~~ 231 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNKY----DNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRK-----DK-------RVLSVLIKE 231 (280)
T ss_pred CCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHhc--CCChHHHHHHHHHHHccC-----Ch-------hHHHHHHHH
Confidence 5677777888888887722 22244555565553 237899999999999852 23 455555566
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 003155 411 MSTSEDTAAAAALAFRHICD 430 (843)
Q Consensus 411 l~~~~~v~~~A~~a~~~lc~ 430 (843)
+.++. +...|+.|+-.+-.
T Consensus 232 L~~~~-~~~~a~~ALg~ig~ 250 (280)
T PRK09687 232 LKKGT-VGDLIIEAAGELGD 250 (280)
T ss_pred HcCCc-hHHHHHHHHHhcCC
Confidence 66665 77778888777754
No 121
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=42.97 E-value=6.2e+02 Score=29.79 Aligned_cols=215 Identities=10% Similarity=0.082 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
.+.+....+.-+.+...++..+|. ++..++..+...=.. ...++-.|---+..+|......+.. +-+.+.+...
T Consensus 255 ~te~~~~~L~~l~~l~~~~~~f~k---~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~--~vlk~mY~af 329 (661)
T KOG2256|consen 255 DTEVLAFTLRHLTVLVPFLATFPK---LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLD--PVLKTMYLAF 329 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHH--HHHHHHHHHH
Confidence 456666777777788888888886 677666666532221 1225566666666677665543321 1112222222
Q ss_pred hcccCCCCCChhhHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccC-----chhhHHHHHHH
Q 003155 451 VNGEGSLKVSAEDSLHLV-EALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH-----PRDLTVHIDRF 524 (843)
Q Consensus 451 ~~~~~~~~l~~~~~~~l~-eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~l 524 (843)
+.+..-.+.........+ .+..-+. .++....+...-.++..+.-.|.+++.......-+.. .+-+-.|..+|
T Consensus 330 v~nsk~~~~~tl~~i~Fl~~slvEL~-~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvi 408 (661)
T KOG2256|consen 330 VRNSKFVTVNTLPLINFLQNSLVELL-GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVI 408 (661)
T ss_pred HHhCCCCCCcccchhHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221000011112222211 1222222 2344444544445555555666666654322100000 00011233444
Q ss_pred HHhhhccCCcchHHHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 003155 525 AYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ 596 (843)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~--~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~ 596 (843)
+. ..+...+..+..--+.+++.-+....+ ....++=++++.+.+..++.|.+ .|+.|.+++.+-....
T Consensus 409 sf---~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~f-IPi~~ll~Eml~~~~~ 478 (661)
T KOG2256|consen 409 SF---ANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTF-IPLSPLLVEMLKSVTF 478 (661)
T ss_pred HH---hhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCce-eecHHHHHHHHHHhhc
Confidence 42 111112222222222222222222221 24456778888888888877764 4667777777664443
No 122
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.79 E-value=6.2e+02 Score=31.82 Aligned_cols=90 Identities=12% Similarity=0.262 Sum_probs=64.6
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccC-CcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhcc
Q 003155 610 VIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEF-TSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 688 (843)
Q Consensus 610 li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~-~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~ 688 (843)
+...-+..++..+.+.+|+..++..+| .. .. +-.||++..+..-++--++.+|..|++..+ +.+.=|+|.
T Consensus 266 Ll~~r~etqe~~d~i~~mi~~if~sVF--VH---RYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsY----LKYiGWtLs 336 (1048)
T KOG2011|consen 266 LLMLRKETQEQQDEIESMINDIFDSVF--VH---RYRDVDPDIRAICIQELGIWIKSYPEIFLSDSY----LKYIGWTLS 336 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhee--ee---ecccCchHHHHHHHHHHHHHHHhccHHHhcchH----HHHhcceee
Confidence 333333333355577777777766554 21 22 457999999999999999999999998654 556667777
Q ss_pred CCChhHHHHHHHHHHHhhcc
Q 003155 689 VQHREASNSILTFLSDIFDL 708 (843)
Q Consensus 689 ~~e~~~~~s~~~fl~~li~~ 708 (843)
=.+.++-+.+++.+..|+..
T Consensus 337 Dk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 337 DKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred cCccHHHHHHHHHHHHHHhc
Confidence 67777778888888888874
No 123
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=39.61 E-value=1.7e+02 Score=33.35 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHHHhhccCCCccccchHHHhhhccCCC-CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH
Q 003155 340 ALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 415 (843)
Q Consensus 340 ~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~ 415 (843)
.|-.++.+++.-++.-.+++|.++..|++.. ....+....+-+|.+ +.++ .|..++++|...+.+.+
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Q------k~~e---vL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQ------KQLE---VLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHh------ccHH---HHHHHHHHHHHHhcccc
Confidence 4556667777766667899999999998864 233333333333332 3454 78888888877665543
No 124
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=38.85 E-value=3e+02 Score=26.23 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=49.8
Q ss_pred HHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHH---HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhh
Q 003155 731 SITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLE---WAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAA 807 (843)
Q Consensus 731 ~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~~~~~---wl~~~l~~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~ 807 (843)
.++..++..+...... ....+.++|..+.+++|....+ =+++.++.++. ++.+....+++.++... ++
T Consensus 55 ~Ile~l~~rI~~~s~~-~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~--lp~~~a~~ll~Al~PLi------~~ 125 (158)
T PF14676_consen 55 EILEQLLNRIVTKSSS-PSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSF--LPGDVAIGLLRALLPLI------KF 125 (158)
T ss_dssp HHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTT--S-HHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHH------hc
Confidence 4444555555533333 2357899999999999976543 34445566765 78899999999998763 34
Q ss_pred hHHHHHHHH-HHhhh
Q 003155 808 MAPVEELSD-VCRRN 821 (843)
Q Consensus 808 ~~~~~~F~~-~~r~~ 821 (843)
+..++|-.+ ++|+.
T Consensus 126 s~~lrd~lilvLRKa 140 (158)
T PF14676_consen 126 SPSLRDSLILVLRKA 140 (158)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 455556555 45554
No 125
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.28 E-value=8.9e+02 Score=29.65 Aligned_cols=171 Identities=11% Similarity=0.153 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCC-----C-cHHHHHHHHHHH
Q 003155 310 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-----Q-QPQLLQTVCLTI 383 (843)
Q Consensus 310 ~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp-----~-~~~v~~t~~~~i 383 (843)
..++.+..+.+.. ..++-.+.| +-++-++.|- .+++++|.+...-.+.. + --+|..+.+.++
T Consensus 767 ekvl~i~ld~Lkd--------edsyvyLna-I~gv~~Lcev---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~ 834 (982)
T KOG4653|consen 767 EKVLAIALDTLKD--------EDSYVYLNA-IRGVVSLCEV---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVA 834 (982)
T ss_pred HHHHHHHHHHhcc--------cCceeeHHH-HHHHHHHHHh---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHH
Confidence 4555555544432 344544332 2333344443 34567777776432221 1 136666666666
Q ss_pred HhhHHHHhhCCCCchhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChh
Q 003155 384 GAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAE 462 (843)
Q Consensus 384 g~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~ 462 (843)
-+..+.+.. |...+++.+.+|+++|+ ..+..++..+..+|.-.+-....++-.....+.++...++ +.-
T Consensus 835 qa~Gel~~~------y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~----s~~ 904 (982)
T KOG4653|consen 835 QALGELVFK------YKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDG----SVL 904 (982)
T ss_pred HHhccHHHH------HHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCC----chh
Confidence 655554443 67788888899999885 2577888888889987775555566666666666654321 234
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHh
Q 003155 463 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIIN 503 (843)
Q Consensus 463 ~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~ 503 (843)
.|...+.-+...+.... .+..+.+..++-.....+.+...
T Consensus 905 vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr 944 (982)
T KOG4653|consen 905 VRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVR 944 (982)
T ss_pred hHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555442 33334343333333333444343
No 126
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.99 E-value=2.3e+02 Score=25.94 Aligned_cols=119 Identities=8% Similarity=0.058 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCC--c----chhHHHHHHHHHHHH
Q 003155 561 TMESLCRACKYAVRT-SKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD--P----SCASYLHNLIEALFK 633 (843)
Q Consensus 561 i~e~~~~~l~~~i~~-~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~--~----~~~~~l~~~l~~l~~ 633 (843)
|..++|.++..++.. +...-..+++.+++.+... ......+|.++..+...+++. . .-+..+.+.+..-..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 456677777766543 3332223445444443321 122234677888888887641 1 122233333333333
Q ss_pred HHHHhhcc-c-ccCCc-CCchHHHHHHHHHHHHhhCCCc-ccCcCCcHHHHH
Q 003155 634 RTTCLLTS-I-EEFTS-RPDVADDCFLLASRCIRYCPQL-FIPSSVFPSLVD 681 (843)
Q Consensus 634 ~~~~~l~~-~-~~~~~-~pD~~~~~f~l~~~~~~~~p~~-~~~s~~l~~i~~ 681 (843)
.+++.+.+ . ..... +++++...++.+..+++..|.. +..++.++.+++
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~ 133 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQ 133 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHH
Confidence 33433321 0 11122 2778888888888887744322 334444444444
No 127
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=34.63 E-value=2.7e+02 Score=26.35 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccC
Q 003155 603 FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP 672 (843)
Q Consensus 603 ~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~ 672 (843)
+....-.+|.+..+. .++.++..++.|...-+.. .+.....+=.-.||+|+.++..+.-++|.+
T Consensus 41 v~~~~~~lV~KLnE~-----~FRPlF~~l~dWA~~~l~~-~~~~~~~~R~itfy~l~~~l~e~LKslf~~ 104 (153)
T PF08146_consen 41 VISAFVSLVLKLNEA-----TFRPLFLKLVDWATSGLPK-SDSSGSRARLITFYRLLNALAEKLKSLFTP 104 (153)
T ss_pred HHHHHHHHHHHcccc-----hhHhHHHHHHHHHcccCCc-ccCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777654 5666677777777654432 224456667888999999999876666554
No 128
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=33.62 E-value=5.2e+02 Score=26.12 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=38.6
Q ss_pred hhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003155 433 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 491 (843)
Q Consensus 433 ~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~ 491 (843)
++.+..|++.++..+...... ..++.+.+..+..|+=.++...+..+ ...+...+
T Consensus 146 k~~~~kh~~~lL~~Yi~~~~~---~~l~~~vr~~L~pGiy~l~d~~s~~e-~~~l~a~L 200 (223)
T PF10441_consen 146 KKSLRKHAPYLLANYISLQLK---YTLPPEVREALMPGIYALFDVCSQHE-LQQLNASL 200 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHc
Confidence 445667778777777666543 25789999999999999999887655 33443333
No 129
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.58 E-value=8.5e+02 Score=28.61 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=48.2
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccC--CCCcH
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK--LPQQP 373 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~--lp~~~ 373 (843)
...++.|+....|....+..+.+.+.+ ..-...||+=. +..+...+.....+.+..++.++.+ .+.++
T Consensus 342 ~r~~~~Dal~~~GT~~a~~~i~~~i~~---------~~~~~~ea~~~-~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 342 ARRIFLDAVAQAGTPPALKFIKQWIKN---------KKITPLEAAQL-LAVLPHTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc---------CCCCHHHHHHH-HHHHHHhhhcCCHHHHHHHHHHhcCccccccH
Confidence 556777777778877777766665543 22223333222 2223333322334556666666532 33478
Q ss_pred HHHHHHHHHHHhhHHHHh
Q 003155 374 QLLQTVCLTIGAYSKWFD 391 (843)
Q Consensus 374 ~v~~t~~~~ig~y~~~l~ 391 (843)
.++.+++..+|....-..
T Consensus 412 ~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 412 YLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888887665333
No 130
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=33.47 E-value=1.4e+03 Score=31.10 Aligned_cols=75 Identities=8% Similarity=0.047 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHH----hhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc----CCHHH
Q 003155 372 QPQLLQTVCLTIG----AYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC----GYLDG 442 (843)
Q Consensus 372 ~~~v~~t~~~~ig----~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~----~~~~~ 442 (843)
++.++...+.++. .+++-++.-|. .++..+.....++ +.+...|=.++..++++.-..+. ..+..
T Consensus 1196 ~~eVrE~ILeCv~qmI~s~~~nIkSGWk------tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D 1269 (1780)
T PLN03076 1196 AVEIRELIIRCVSQMVLSRVNNVKSGWK------SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD 1269 (1780)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCcH------HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Confidence 4455555555554 55556666664 5555554433332 34788888888888887655443 23455
Q ss_pred HHHHHHHhhc
Q 003155 443 LYNVYRTAVN 452 (843)
Q Consensus 443 li~~~~~~~~ 452 (843)
+++.+.....
T Consensus 1270 lV~cL~~Fa~ 1279 (1780)
T PLN03076 1270 CVNCLIAFTN 1279 (1780)
T ss_pred HHHHHHHHHh
Confidence 6666555554
No 131
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=32.88 E-value=7.1e+02 Score=27.47 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=49.2
Q ss_pred CCchHHHHHHHHHHHHhhC---CCcc---cCcCCcHHHHHHHHHhccCC-ChhHHHHHHHHHHHhhccccCC----Cchh
Q 003155 648 RPDVADDCFLLASRCIRYC---PQLF---IPSSVFPSLVDCSMIGITVQ-HREASNSILTFLSDIFDLAKSC----KGEE 716 (843)
Q Consensus 648 ~pD~~~~~f~l~~~~~~~~---p~~~---~~s~~l~~i~~~~~~~l~~~-e~~~~~s~~~fl~~li~~~~~~----~~~~ 716 (843)
-|-....-..|+..+++.- +..- +-...+..+++|.+ .++ ++..-+-+..++..+++.+... ..+.
T Consensus 224 p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~---~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~ 300 (373)
T PF14911_consen 224 PPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLM---LVNEEPQVKKLATELLQYMVESCQVGSSGEPREQ 300 (373)
T ss_pred CCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHh---hcCCCcchhHHHHHHHHHHHHcccccCcchHHHH
Confidence 3445566666777777652 1111 11224566777754 335 6666788899999998755411 1223
Q ss_pred hHHHHHHHHhhhhHHHHHHHHH
Q 003155 717 FLSVRDSVIIPRGASITRILIA 738 (843)
Q Consensus 717 ~~~~~~~~~~~~g~~lv~~ll~ 738 (843)
+...+.+++++|+..-....+.
T Consensus 301 l~s~lrsfvqk~l~~~t~~~f~ 322 (373)
T PF14911_consen 301 LTSVLRSFVQKYLAHYTYQYFQ 322 (373)
T ss_pred HHHHHHHHHHHHhhhhhHHHHH
Confidence 4445666666666555554443
No 132
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.24 E-value=5e+02 Score=30.94 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=75.1
Q ss_pred HhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc--cccchHHHhhhccCCCCcHHHHHHHH
Q 003155 303 AASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQQPQLLQTVC 380 (843)
Q Consensus 303 ~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~--~~~~l~~l~~~l~~lp~~~~v~~t~~ 380 (843)
+..-+.++++.+.+.+.|...+. +.+-+.-|.+|-.+..++|.++.. ...++|.+... .....+..++.+++
T Consensus 377 L~~Kt~~e~~~~~IlplL~~S~~-----~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L 450 (700)
T KOG2137|consen 377 LKEKTPPEEVKEKILPLLYRSLE-----DSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL-AFKTTNLYVKVNVL 450 (700)
T ss_pred HHhhCChHHHHHHHHHHHHHHhc-----CcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc-hhcccchHHHHHHH
Confidence 34455667777777777766542 567778899999999999999843 23445554444 22223689999999
Q ss_pred HHHHhhHHHHhhCCCCchhHHHHHHHHHhc-cCCCHHHHHHHHHHHHH
Q 003155 381 LTIGAYSKWFDAASSDPSILASVLSILTSG-MSTSEDTAAAAALAFRH 427 (843)
Q Consensus 381 ~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~-l~~~~~v~~~A~~a~~~ 427 (843)
.+++...+.+...- .++.+++++... ..+|. +...-...+.+
T Consensus 451 ~c~~~l~q~lD~~~----v~d~~lpi~~~~~~~dp~-iv~~~~~i~~~ 493 (700)
T KOG2137|consen 451 PCLAGLIQRLDKAA----VLDELLPILKCIKTRDPA-IVMGFLRIYEA 493 (700)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHhcCCCcH-HHHHHHHHHHH
Confidence 99999997776532 567777766543 45665 44444433333
No 133
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.18 E-value=9.1e+02 Score=27.91 Aligned_cols=141 Identities=12% Similarity=0.121 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHH---HhhccCCCccccchHHHhhhcc---------CCC---CcHH
Q 003155 310 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIR---AISTYVSVVEAEVMPQVMALLP---------KLP---QQPQ 374 (843)
Q Consensus 310 ~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~---~iae~~~~~~~~~l~~l~~~l~---------~lp---~~~~ 374 (843)
|.=+..+.+.+...++..-+.+-.-+.++-..+++. ++.+.-.-.-++++.++++.+. ..| .|-.
T Consensus 234 DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwa 313 (576)
T KOG2549|consen 234 DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWA 313 (576)
T ss_pred CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHH
Confidence 444555566666655432111222445555555444 4444433334566666666531 123 2778
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHH---HHHHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHh
Q 003155 375 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED---TAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTA 450 (843)
Q Consensus 375 v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~---v~~~A~~a~~~lc~~c~~-~l~~~~~~li~~~~~~ 450 (843)
+|.-+..+++..+.-+..--. .+-+.++..+.+.+.++.+ ...-|-..+..|-.+.-. -+.|.+......++..
T Consensus 314 LRDfAA~ll~~i~k~f~~~y~--~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~ 391 (576)
T KOG2549|consen 314 LRDFAARLLAQICKNFSTLYN--NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSV 391 (576)
T ss_pred HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhh
Confidence 999999999876664433222 2556777788777765521 234444445555544333 4558888877777766
Q ss_pred hc
Q 003155 451 VN 452 (843)
Q Consensus 451 ~~ 452 (843)
+.
T Consensus 392 l~ 393 (576)
T KOG2549|consen 392 LD 393 (576)
T ss_pred cc
Confidence 53
No 134
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.84 E-value=82 Score=21.94 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHhccCC-CHHHHHHHHHHHHHHHH
Q 003155 404 LSILTSGMST-SEDTAAAAALAFRHICD 430 (843)
Q Consensus 404 l~~l~~~l~~-~~~v~~~A~~a~~~lc~ 430 (843)
++.|.+.|++ ..+++..|++|+.+||.
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3444444443 34599999999999973
No 135
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=29.82 E-value=6.3e+02 Score=30.06 Aligned_cols=242 Identities=12% Similarity=0.103 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHH-HHHHhcCCccccccCchhh
Q 003155 439 YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL-QEIINQGPEILQKKHPRDL 517 (843)
Q Consensus 439 ~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l-~~~~~~~~~~~~~~~~~~~ 517 (843)
+++.+++.+.+..+ ..+...|-.+..|.+.+++.+|-......++ +++-..+.+ -+.+...-+. ....++
T Consensus 243 ~l~~iV~f~~~s~S-----s~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdi---i~tnel 313 (993)
T COG5234 243 YLEVIVDFLLSSVS-----SIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDI---IITNEL 313 (993)
T ss_pred HHHHHHHHHHcCcc-----cccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccce---eecchH
Confidence 34556655555443 2356788889999999999987654444333 222222221 1111111100 112233
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHh---hcC---CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-
Q 003155 518 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---RAW---DMRTMESLCRACKYAVRTSKRFMGITIGAILEE- 590 (843)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~---~~~---~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~- 590 (843)
.|+..+.-+.-..-.+=..... -+.|++...+.- |.. ...+++..|-++....|+....+.|-+...+-.
T Consensus 314 -~w~~~i~~~ala~~~~id~~d~--~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hl 390 (993)
T COG5234 314 -VWHGAILFFALAGAGLIDYSDC--LILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHL 390 (993)
T ss_pred -HHHHHHHHHHHhhccccchhhh--hhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHH
Confidence 4444444433110011011111 134444443321 111 113667777777777777655555545444333
Q ss_pred HHH-HHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCc
Q 003155 591 IQG-LYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQL 669 (843)
Q Consensus 591 l~~-~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~ 669 (843)
+++ ++-.....+=-.....+....|+..+..... + -.++++ ..+-|+ ..+..+.+.|.+.+.|..
T Consensus 391 l~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~-~--------lIslIN----~~sv~r-~s~csg~~~r~~~~~~k~ 456 (993)
T COG5234 391 LLQTALFDPELNVRRAATAALFEVIGRHASIADGL-S--------LISLIN----YVSVTR-ISNCSGDLCRKVAHFPKF 456 (993)
T ss_pred HHhhhhcCchhhhhhHHHHHHHHHhccCCCcccch-h--------hhhhcc----ceecch-hhhcchHHHHHhcCcccc
Confidence 333 2222222222233444555566632111110 0 111122 334455 666777777777777753
Q ss_pred ccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccc
Q 003155 670 FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLA 709 (843)
Q Consensus 670 ~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~ 709 (843)
..-.++++. +.+..+.+-++......---+..++..+
T Consensus 457 ~~CedVF~d---iLl~Nl~H~~~~~k~~~~y~l~~liK~~ 493 (993)
T COG5234 457 RSCEDVFQD---ILLTNLQHWDVKVKQLSAYSLRQLIKYP 493 (993)
T ss_pred chHHHHHHH---HHHhhhhccchhhhhhccccHHHHhcCc
Confidence 222223333 3444455555444333333466666544
No 136
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=29.61 E-value=4e+02 Score=32.29 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=50.6
Q ss_pred ccchHHHhhhccCC--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH-HHHHHhc-c--CCCHHHHHHHHHHHHHHH
Q 003155 356 AEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-LSILTSG-M--STSEDTAAAAALAFRHIC 429 (843)
Q Consensus 356 ~~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~v-l~~l~~~-l--~~~~~v~~~A~~a~~~lc 429 (843)
.+++++++..+.++ ..|+.||+++..+|+.+.+. .++ +.+.. +-.+... + .+|. |.+.|-.++..++
T Consensus 122 ~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~---l~~~~g~~~~l~~l~~D~dP~-Vi~nAl~sl~~i~ 194 (757)
T COG5096 122 KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKD---LYHELGLIDILKELVADSDPI-VIANALASLAEID 194 (757)
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHh---hhhcccHHHHHHHHhhCCCch-HHHHHHHHHHHhc
Confidence 45666777666443 24899999999999987542 332 33333 2222222 2 2455 9999999999998
Q ss_pred HHhhhhhcCCHHHHHHHHHH
Q 003155 430 DDCRKKLCGYLDGLYNVYRT 449 (843)
Q Consensus 430 ~~c~~~l~~~~~~li~~~~~ 449 (843)
.+ ...+|...+...+.+
T Consensus 195 ~e---~a~~~~~~~~~~i~~ 211 (757)
T COG5096 195 PE---LAHGYSLEVILRIPQ 211 (757)
T ss_pred hh---hhhhHHHHHHHHhhh
Confidence 87 333444444433333
No 137
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.35 E-value=1.1e+03 Score=28.62 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+=..+||.=+.++-||.+-+ .+.+.|.++..+.+ .++.|++-.--.+-||++. +|+ +-.--++.+.++
T Consensus 47 nkd~~KleAmKRIia~iA~G~d--vS~~Fp~VVKNVas--kn~EVKkLVyvYLlrYAEe---qpd---LALLSIntfQk~ 116 (968)
T KOG1060|consen 47 NKDSLKLEAMKRIIALIAKGKD--VSLLFPAVVKNVAS--KNIEVKKLVYVYLLRYAEE---QPD---LALLSINTFQKA 116 (968)
T ss_pred cccHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHhhc---CCC---ceeeeHHHHHhh
Confidence 5667789999999999988754 34566666665542 2556666666666677653 454 222234555566
Q ss_pred cCCCH
Q 003155 411 MSTSE 415 (843)
Q Consensus 411 l~~~~ 415 (843)
|.+|+
T Consensus 117 L~DpN 121 (968)
T KOG1060|consen 117 LKDPN 121 (968)
T ss_pred hcCCc
Confidence 66654
No 138
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.33 E-value=9e+02 Score=27.59 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHH-HhccCCChhHHHHHHHHHHHhhccccCC--------------
Q 003155 648 RPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSM-IGITVQHREASNSILTFLSDIFDLAKSC-------------- 712 (843)
Q Consensus 648 ~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~-~~l~~~e~~~~~s~~~fl~~li~~~~~~-------------- 712 (843)
......++|.|+..+++++...+- .+.+..+++.++ .|.+....+..+++++++..++.++.-+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~-e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLD-EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSI 225 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH
Confidence 455688999999999998887643 333455554433 2455566677799999999999853210
Q ss_pred ------CchhhHHHHHHHHhh-hhHHHHHHHHHHc
Q 003155 713 ------KGEEFLSVRDSVIIP-RGASITRILIASL 740 (843)
Q Consensus 713 ------~~~~~~~~~~~~~~~-~g~~lv~~ll~~l 740 (843)
..+.| ..+.+++.. +|...++.+..-+
T Consensus 226 ~~~~~l~~~~w-~~m~nL~~S~~g~~~i~~L~~iL 259 (464)
T PF11864_consen 226 VNSVSLCKPSW-RTMRNLLKSHLGHSAIRTLCDIL 259 (464)
T ss_pred hcccccchhHH-HHHHHHHcCccHHHHHHHHHHHH
Confidence 01122 346667754 4777777666655
No 139
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.25 E-value=9.3e+02 Score=27.43 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 399 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 399 ~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
.+..++..+.....+|. +++.+|+.-+-+....|......|-..+++.+..-+- +....+.++..+.++..+...
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~----D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY----DDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHh
Confidence 67777777777777764 5889999999999988888887777777666544332 233467888888888888776
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHhcC
Q 003155 478 LPQVDAKKALEMLCLPVVTPLQEIINQG 505 (843)
Q Consensus 478 ~p~~~~~~~l~~l~~p~~~~l~~~~~~~ 505 (843)
....+ +..++-++.-++.+.....
T Consensus 331 ~~~~~----l~~~~l~ialrlR~l~~se 354 (533)
T KOG2032|consen 331 ASNDD----LESYLLNIALRLRTLFDSE 354 (533)
T ss_pred hhhcc----hhhhchhHHHHHHHHHHhc
Confidence 54433 3444455556666666543
No 140
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.92 E-value=2.1e+03 Score=31.45 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=90.2
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCc-hHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHH
Q 003155 579 FMGITIGAILEEIQGLYQQHQQP-CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFL 657 (843)
Q Consensus 579 ~~~p~l~~l~~~l~~~~~~~~~~-~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~ 657 (843)
...|+++.++..-..-..+.+.+ .|.+++.++...+|... .+.+-+=+-+++...++.++..-..-.-++.++=|-+
T Consensus 626 vl~phv~~Ii~~smela~~a~eplnYf~LLraLFRsigGg~--~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvE 703 (3550)
T KOG0889|consen 626 VLRPHVHDIISTSMELATTAPEPLNYFQLLRALFRSIGGGA--FDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVE 703 (3550)
T ss_pred hcccchhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhhccc--hHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHH
Confidence 35678888777655444555554 68899999999998742 1111111122222233333221112344666777777
Q ss_pred HHHHHHhhCCCcccC-cCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHH
Q 003155 658 LASRCIRYCPQLFIP-SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRIL 736 (843)
Q Consensus 658 l~~~~~~~~p~~~~~-s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~l 736 (843)
+|-.+ |.-+.. -|+++.+++=.+.|++. -++.+.-++.-+.-.+... .|+| +...+.+.-..++.++
T Consensus 704 LclTv----PvRLS~Llpylp~LM~PLv~aLkg-s~~lvsQgLRtlelcvDnl----tPef---L~~~mepv~~~lmqaL 771 (3550)
T KOG0889|consen 704 LCLTL----PVRLSSLLPYLPLLMKPLVFALKG-SPELVSQGLRTLELCVDNL----TPEF---LDPIMEPVRDDLMQAL 771 (3550)
T ss_pred HHHhh----hHHHHHhhhhhhhhhhHHHHHhcC-CHHHHHHHHhHHHHHHhcC----ChHh---hhHHHHHHHHHHHHHH
Confidence 76433 322211 24566677666667775 3556677787777777632 3444 4444444444555555
Q ss_pred HHHcccCCC-CCCcccHHHHHHHHHHHh
Q 003155 737 IASLTGALP-SSRLETVTYALLALTRAY 763 (843)
Q Consensus 737 l~~l~~~~p-~s~~~~~a~iL~~l~~~~ 763 (843)
...+. ..| .+.-.....||++|...+
T Consensus 772 w~~l~-~~~~~s~s~~a~rILGKlgG~N 798 (3550)
T KOG0889|consen 772 WSHLR-PVPNYSYSHRALRILGKLGGRN 798 (3550)
T ss_pred HHhcc-CCCCchHHHHHHHHHHhhcCcc
Confidence 44443 222 233334445777774443
No 141
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=27.37 E-value=3.4e+02 Score=34.34 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhH-----------------------------------HHHHHHHHhccCCCHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSIL-----------------------------------ASVLSILTSGMSTSED 416 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-----------------------------------~~vl~~l~~~l~~~~~ 416 (843)
.|.|+++.++-|+.++.||.+...+.-+| .-+++.+..++.++++
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE 670 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEE 670 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcch
Confidence 57999999999999999998643321122 2334455555655432
Q ss_pred -HHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHH
Q 003155 417 -TAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPV 494 (843)
Q Consensus 417 -v~~~A~~a~~~lc~~c~~~l~-~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~ 494 (843)
|...|-.+|..+|+-. .+- +++-.|++....++--+ ..-.|..++.=|..++..+...+..-.+..++.|.
T Consensus 671 ~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hP-----N~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpf 743 (1431)
T KOG1240|consen 671 AVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHP-----NLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPF 743 (1431)
T ss_pred hhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCc-----hHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHh
Confidence 6667777777776531 111 34444444444443210 23345445555555555554444333333344444
No 142
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=1.4e+03 Score=28.94 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=121.9
Q ss_pred hHHHhhhcc-CCCC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhh
Q 003155 359 MPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS---GMSTSEDTAAAAALAFRHICDDCR 433 (843)
Q Consensus 359 l~~l~~~l~-~lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~---~l~~~~~v~~~A~~a~~~lc~~c~ 433 (843)
+..++..|. .+.+ ...||.+++.-+|+.+.=+ |. .+-..++.-+.+ ....+. .---||-||..++..
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl---p~--~Lad~vi~svid~~~p~e~~~-aWHgacLaLAELA~r-- 410 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL---PP--ELADQVIGSVIDLFNPAEDDS-AWHGACLALAELALR-- 410 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC---cH--HHHHHHHHHHHHhcCcCCchh-HHHHHHHHHHHHHhc--
Confidence 344445543 3443 5799999999999986533 32 244455544433 222233 566888888888763
Q ss_pred hhhcCC-HHHHHHHHHHhhcccC---CCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHH-----------
Q 003155 434 KKLCGY-LDGLYNVYRTAVNGEG---SLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL----------- 498 (843)
Q Consensus 434 ~~l~~~-~~~li~~~~~~~~~~~---~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l----------- 498 (843)
.-+.|. ++.++..+...+.-.. .+..+...|-.....+-.+..+-.+....+.++++..-++..-
T Consensus 411 GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 411 GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 444442 4555555554443210 1112233333333344444445555555566665554443211
Q ss_pred -----HHHHhcCCccccccC-chhhHHHHHHHHHhhhc---cCCcchHHHHHHHHHHHHHHHHHh--hcCCHHHHHHHHH
Q 003155 499 -----QEIINQGPEILQKKH-PRDLTVHIDRFAYIFRY---VNHPEAVADAIQRLWPIFKAIFDI--RAWDMRTMESLCR 567 (843)
Q Consensus 499 -----~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~il~~--~~~~~~i~e~~~~ 567 (843)
+..+.... +.+ --++....+..+..-+. .+-+-++..+-+-.-|++..++.+ .-+|+.+.|..-.
T Consensus 491 AsAAlqE~VGR~~----n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 491 ASAALQENVGRQG----NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHHHHHHhccCC----CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 00000000 000 00011111111111110 000111122222345666666654 3468999999999
Q ss_pred HHHHHHHhhhhhhh-hhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhC
Q 003155 568 ACKYAVRTSKRFMG-ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFG 615 (843)
Q Consensus 568 ~l~~~i~~~~~~~~-p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg 615 (843)
++++......+++. -++|++++.....=-..++++++...+.+....+
T Consensus 567 aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~ 615 (1133)
T KOG1943|consen 567 ALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK 615 (1133)
T ss_pred HHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence 99997766666665 5678888766544444567777777665554443
No 143
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.02 E-value=1.8e+02 Score=31.35 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=69.5
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhh
Q 003155 358 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKL 436 (843)
Q Consensus 358 ~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l 436 (843)
-+|-+++.+.+ .++.+++-++..||..+--=..+.-..+--|.+++.+..-++++ .|++-.|+.|++.++.+-+-..
T Consensus 209 ~lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 209 GLPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred Cchhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 34555554443 36778888888887665322221110012345666777767654 3599999999999998765432
Q ss_pred --c--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhHHHHH
Q 003155 437 --C--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV--ITELPQVDAKKALEMLCLPVVTP 497 (843)
Q Consensus 437 --~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v--i~~~p~~~~~~~l~~l~~p~~~~ 497 (843)
+ +-+|.++..+++-. --.+.++++.+ |+.-|-.+..-.=..++.|+..-
T Consensus 287 eiv~ag~lP~lv~Llqs~~------------~plilasVaCIrnisihplNe~lI~dagfl~pLVrl 341 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSPM------------GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRL 341 (550)
T ss_pred HHHhcCCchHHHHHHhCcc------------hhHHHHHHHHHhhcccccCcccceecccchhHHHHH
Confidence 2 45566665543211 12256666666 55545443332233455565433
No 144
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.92 E-value=8.3e+02 Score=26.38 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhc-ccccCCcCCchHHHHHHHHHHHHhhCCCcccC---------c
Q 003155 604 LYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLT-SIEEFTSRPDVADDCFLLASRCIRYCPQLFIP---------S 673 (843)
Q Consensus 604 L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~-~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~---------s 673 (843)
...++.++...+.+..+......++..+.+.-+..+. ..+ ...+.++...++|+..++.+..+.... .
T Consensus 26 ~~~L~~~l~~ls~~~~~~~~g~~l~~~iL~~~~k~lyr~L~--~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~ 103 (330)
T PF11707_consen 26 SSVLALLLKKLSSDLSFQSYGLELIRSILQNHLKLLYRSLS--SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSL 103 (330)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCch
Confidence 3445555555555544444555556665554444332 111 234778889999999998855543211 1
Q ss_pred CCcHHHHHHHHHhccCC----C--hhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCC
Q 003155 674 SVFPSLVDCSMIGITVQ----H--REASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSS 747 (843)
Q Consensus 674 ~~l~~i~~~~~~~l~~~----e--~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s 747 (843)
+.+..++.--....... . +++=...++|+..++.... +. ...+++..++. +..++.++.. .
T Consensus 104 ~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~----~~---~~~~lL~~~~~--~~~l~k~l~~----D 170 (330)
T PF11707_consen 104 KSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGD----PE---LKRDLLSQKKL--MSALFKGLRK----D 170 (330)
T ss_pred hhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCC----HH---HHHHHHHcCch--HHHHHhcccC----C
Confidence 11222221111000000 0 1455678899999997431 12 35566666554 6667776643 3
Q ss_pred CcccHHHHHHHHH
Q 003155 748 RLETVTYALLALT 760 (843)
Q Consensus 748 ~~~~~a~iL~~l~ 760 (843)
..+-+..+|-.+.
T Consensus 171 ~~~~v~~iL~~l~ 183 (330)
T PF11707_consen 171 PPETVILILETLK 183 (330)
T ss_pred CHHHHHHHHHHHH
Confidence 3344444444443
No 145
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.22 E-value=1.3e+03 Score=28.00 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH
Q 003155 373 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 431 (843)
Q Consensus 373 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~ 431 (843)
+.|+.-++.+|. ..|...|+ --..+|..+.+.+.+|. ++++.|++.+..|..+
T Consensus 318 ~~vk~raL~ti~---~lL~~kPE---qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 318 EEVKKRALKTIY---DLLTNKPE---QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHHHHH---HHHhCCcH---HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 455555555553 55677786 45566777777787773 6899999999988544
No 146
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=25.22 E-value=7.2e+02 Score=25.07 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=72.2
Q ss_pred CCcCCchHHHHHHHHHHHHhhCCCcccC-cCCcHHHHHHHHHhccC-----------CChhH--HHHHHHHHHHhhccc-
Q 003155 645 FTSRPDVADDCFLLASRCIRYCPQLFIP-SSVFPSLVDCSMIGITV-----------QHREA--SNSILTFLSDIFDLA- 709 (843)
Q Consensus 645 ~~~~pD~~~~~f~l~~~~~~~~p~~~~~-s~~l~~i~~~~~~~l~~-----------~e~~~--~~s~~~fl~~li~~~- 709 (843)
....+++=....+++..++++++..+.. -+.+-.++...+.++.. ...+. .++...+++.+.+..
T Consensus 48 ~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~ 127 (223)
T PF10441_consen 48 ADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSS 127 (223)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCccc
Confidence 4455666666667777788877776655 23344444444444431 11122 566666666666530
Q ss_pred c--CCC----chhhHHHHHHHHhhhhHHHHHHHHHHc-ccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 003155 710 K--SCK----GEEFLSVRDSVIIPRGASITRILIASL-TGALPSSRLETVTYALLALTRAYGVRSLEWAKESV 775 (843)
Q Consensus 710 ~--~~~----~~~~~~~~~~~~~~~g~~lv~~ll~~l-~~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l 775 (843)
. .+. ...-.+.....+.+|-+.++.+-+... .+.+++..-+.+..-++++...++..-.+++..++
T Consensus 128 ~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~L 200 (223)
T PF10441_consen 128 VSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASL 200 (223)
T ss_pred ccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 0 000 001112355666777777777777665 44556666666677777776666655556555443
No 147
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=25.13 E-value=1.3e+03 Score=28.01 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=50.9
Q ss_pred ccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--Hhh
Q 003155 356 AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICD--DCR 433 (843)
Q Consensus 356 ~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~--~c~ 433 (843)
...++.+..++.+ .|..++..++.++..+|.--...+. -.=.++++.+...+.+++ .+..|...++.+|. +++
T Consensus 330 ~giV~kL~kLl~s--~~~~l~~~aLrlL~NLSfd~~~R~~--mV~~GlIPkLv~LL~d~~-~~~val~iLy~LS~dd~~r 404 (708)
T PF05804_consen 330 SGIVEKLLKLLPS--ENEDLVNVALRLLFNLSFDPELRSQ--MVSLGLIPKLVELLKDPN-FREVALKILYNLSMDDEAR 404 (708)
T ss_pred cCCHHHHHHHhcC--CCHHHHHHHHHHHHHhCcCHHHHHH--HHHCCCcHHHHHHhCCCc-hHHHHHHHHHHhccCHhhH
Confidence 4567777777653 4778899999999987653222111 000123344555556665 66778888888884 466
Q ss_pred hhhc--CCHHHHHHHH
Q 003155 434 KKLC--GYLDGLYNVY 447 (843)
Q Consensus 434 ~~l~--~~~~~li~~~ 447 (843)
..+. .-++.+++.+
T Consensus 405 ~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQML 420 (708)
T ss_pred HHHhhcchHHHHHHHH
Confidence 6554 2244444443
No 148
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=24.93 E-value=65 Score=22.96 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCCcccccchhHHHHHhhcCCC--cchHHHHHHH
Q 003155 68 AFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVI 110 (843)
Q Consensus 68 cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~~--~~~~~A~~~l 110 (843)
|+.+-+. .+++.+....+...+...+.|+ .+|++|++.+
T Consensus 2 ~l~~iv~----~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVE----KDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHh----cCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4445544 3445555567777888888865 7789998763
No 149
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=24.23 E-value=3.7e+02 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=21.9
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcC
Q 003155 769 EWAKESVSLIPLTALAEVERSRFLQALSEAASG 801 (843)
Q Consensus 769 ~wl~~~l~~~P~~~~t~~~~~~f~~~l~~~~~~ 801 (843)
+-+.++.+.|- ..+|+++|+.|.+.|-..+.+
T Consensus 53 Nvl~Hi~Gyfk-~~ls~~EK~~~~~~i~~yr~g 84 (117)
T PF08349_consen 53 NVLQHIFGYFK-KKLSSEEKQHFLDLIEDYREG 84 (117)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHcC
Confidence 33444443332 348999999999999988754
No 150
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.77 E-value=1.2e+03 Score=29.58 Aligned_cols=223 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHhhcCCchHhHHHHHHHHHhC
Q 003155 539 DAIQRLWPIFKAIFDIRA--WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ-GLYQQHQQPCFLYLSSEVIKIFG 615 (843)
Q Consensus 539 ~~~~~~~~~l~~il~~~~--~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~-~~~~~~~~~~~L~l~~~li~~fg 615 (843)
..+.++.|++..++.... +++++-.++.-++.+..-.-..++...+|-++..+. +.-..-+..+++.+.--.+
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav---- 990 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV---- 990 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhh----
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHH
Q 003155 616 SDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREAS 695 (843)
Q Consensus 616 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~ 695 (843)
.+.+++++..+.-+..+. +++|++++..+-.++.++-+.--- ...-+.-+..++.-+++.+.
T Consensus 991 -------~fpnlie~~T~~Ly~rL~-----D~~~~vRkta~lvlshLILndmiK------VKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 991 -------RFPNLIEPWTEHLYRRLR-----DESPSVRKTALLVLSHLILNDMIK------VKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred -------hcccccchhhHHHHHHhc-----CccHHHHHHHHHHHHHHHHhhhhH------hcccHHHHHHHhcCCcHHHH
Q ss_pred HHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 003155 696 NSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESV 775 (843)
Q Consensus 696 ~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l 775 (843)
.-|=+|+..+-+ ++ ++-| +--|.+++.+=.+ ++.+.....+-+-|..+.++.+
T Consensus 1053 dlAk~FF~Els~--k~--n~iy---------nlLPdil~~Ls~~---~l~~~~~~~vm~~li~~ikkde----------- 1105 (1251)
T KOG0414|consen 1053 DLAKSFFKELSS--KG--NTIY---------NLLPDILSRLSNG---NLEEESYKTVMEFLIGLIKKDE----------- 1105 (1251)
T ss_pred HHHHHHHHHhhh--cc--cchh---------hhchHHHHhhccC---cccchhhHHHHHHHHHHhcccc-----------
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHH
Q 003155 776 SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDV 817 (843)
Q Consensus 776 ~~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~ 817 (843)
.||... .++++-+++.... ++.+|.+..+..|...
T Consensus 1106 -rf~~~~-----~~rycl~~l~~~e-~~~kk~~~~f~~~a~k 1140 (1251)
T KOG0414|consen 1106 -RFSADR-----IERYCLSLLTTTE-RGSKKLKDLFTALAKK 1140 (1251)
T ss_pred -cccccc-----cchhhhcccccch-hhhhhHHHHHHHHHHH
No 151
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.08 E-value=1.6e+03 Score=28.40 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHhhccCCCccccchHHHhhhcc--CC-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHHHHHhcc
Q 003155 336 PAEAALFCIRAISTYVSVVEAEVMPQVMALLP--KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGM 411 (843)
Q Consensus 336 ~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~--~l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~vl~~l~~~l 411 (843)
++|+.+--..-..+..+ +-.+++..++..+. .. ...|.+|..++.-+| .|+...|+. |+ ...|.++--.|
T Consensus 262 rle~Ll~~r~etqe~~d-~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLg---iWi~~yP~~--Fl~dsYLKYiGWtL 335 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQD-EIESMINDIFDSVFVHRYRDVDPDIRAICIQELG---IWIKSYPEI--FLSDSYLKYIGWTL 335 (1048)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhheeeeecccCchHHHHHHHHHHH---HHHHhccHH--HhcchHHHHhccee
Confidence 57775555544444332 22456666666543 11 124788887777776 899999873 33 34556777778
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Q 003155 412 STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 445 (843)
Q Consensus 412 ~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~ 445 (843)
++.. .|+..+-.++.+|-+. ..+.+.+..+.+
T Consensus 336 sDk~~~VRl~~lkaL~~L~e~--~~~~~~L~lFts 368 (1048)
T KOG2011|consen 336 SDKNGTVRLRCLKALIKLYEK--DEDKDKLELFTS 368 (1048)
T ss_pred ecCccHHHHHHHHHHHHHHhc--cccchHHHHHHH
Confidence 7653 4999999999999876 444444444333
No 152
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=22.35 E-value=98 Score=26.38 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHhhccCCCccccchHHHhhhccCCC-CcHHHHHHHHHHHHhhHHHHhhCCC
Q 003155 335 RPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASS 395 (843)
Q Consensus 335 ~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~ 395 (843)
.++.+++.+++++....+.+--+.+|.++..|.+.. +...++.|+=.+++.| -+.|.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl~eF---krtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQPIRTTVKKTLSEF---KRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-SSHHHHTHHHHHHH---HHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCchHHHHHHHHHHHH---HHhCcc
Confidence 357899999999999998887789999999887653 3457777777777754 445554
No 153
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.90 E-value=1.1e+03 Score=25.66 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhc
Q 003155 416 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 452 (843)
Q Consensus 416 ~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~ 452 (843)
.++.-||..+..+|+.+...-...-+.++..+..++.
T Consensus 283 ~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 283 ALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 4889999999999999988765556677777776664
No 154
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.76 E-value=3.8e+02 Score=30.91 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=61.5
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhh
Q 003155 358 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKL 436 (843)
Q Consensus 358 ~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~-v~~~A~~a~~~lc~~c~~~l 436 (843)
.++..++.|.. +.++.||....-.+|-.+. ... ...+++.|-+-+.++.+ |+..|+-|..-|.-+|...|
T Consensus 586 ~lv~tvelLs~-shN~hVR~g~AvaLGiaca----g~G----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 LLVGTVELLSE-SHNFHVRAGVAVALGIACA----GTG----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred hhhHHHHHhhh-ccchhhhhhhHHHhhhhhc----CCc----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 34444444432 2257888888888885432 222 45666666666666654 78899999999999999999
Q ss_pred cCCHHHHHHHHHHhhc
Q 003155 437 CGYLDGLYNVYRTAVN 452 (843)
Q Consensus 437 ~~~~~~li~~~~~~~~ 452 (843)
.|.+..|...+.+++.
T Consensus 657 np~v~~I~k~f~~vI~ 672 (926)
T COG5116 657 NPNVKRIIKKFNRVIV 672 (926)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 9999999999988874
No 155
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=20.74 E-value=1.6e+02 Score=22.11 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 003155 780 LTALAEVERSRFLQALSE 797 (843)
Q Consensus 780 ~~~~t~~~~~~f~~~l~~ 797 (843)
.+++|+++|..|++.|..
T Consensus 19 ~~nLteeQrn~yI~~lKd 36 (54)
T PF02216_consen 19 MPNLTEEQRNGYIQSLKD 36 (54)
T ss_dssp STTS-HHHHHHHHHHHHH
T ss_pred CCCcCHHHHHhHHHHHhh
Confidence 345999999999999963
No 156
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=20.67 E-value=1.3e+03 Score=26.32 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=66.7
Q ss_pred HHHHHHHhhhccCC-cchHHHHHHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHH
Q 003155 520 HIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAW-----DMRTMESLCRACKYAVRT-SKRFMGITIGAILEEIQ 592 (843)
Q Consensus 520 ~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~il~~~~~-----~~~i~e~~~~~l~~~i~~-~~~~~~p~l~~l~~~l~ 592 (843)
.+..++++.+.-.- .|+ -+-.-.|++.+++++-.. +-.+++.+..|++..... .|..- -+-..-+..+.
T Consensus 83 ~itvLacFC~~pElAsh~---~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~-Lia~G~~~~~~ 158 (698)
T KOG2611|consen 83 SITVLACFCRVPELASHE---EMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMT-LIASGGLRVIA 158 (698)
T ss_pred HHHHHHHHhCChhhccCH---HHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHH-HHhcCchHHHH
Confidence 36778877653110 122 233446888888876432 223678888888876543 22211 11112233444
Q ss_pred HHHhhcC--CchHhHHHHHHHHHhCCC--cchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCC
Q 003155 593 GLYQQHQ--QPCFLYLSSEVIKIFGSD--PSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQ 668 (843)
Q Consensus 593 ~~~~~~~--~~~~L~l~~~li~~fg~~--~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~ 668 (843)
+.|..+. +...|.+.--++..+|-+ ++..+.+..++..+... ++ ..+....-+..+++..++-.++.
T Consensus 159 Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~d----f~-----~~~~a~KfElc~lL~~vl~~~~~ 229 (698)
T KOG2611|consen 159 QMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLALIAAVARD----FA-----VLHNALKFELCHLLSAVLSSEYS 229 (698)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHH----HH-----HhhhHHHHHHHHHHHHHHhCChH
Confidence 5565433 344555555556666543 11223333333332210 11 23344455566666666665554
Q ss_pred cc
Q 003155 669 LF 670 (843)
Q Consensus 669 ~~ 670 (843)
.+
T Consensus 230 e~ 231 (698)
T KOG2611|consen 230 EL 231 (698)
T ss_pred Hh
Confidence 33
Done!