Query 003155
Match_columns 843
No_of_seqs 176 out of 1059
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1g_F Cadmus; transport prote 100.0 4.5E-76 1.5E-80 734.9 62.8 758 5-821 142-966 (971)
2 3gjx_A Exportin-1; transport, 100.0 8.9E-76 3E-80 713.1 58.0 789 4-838 162-1068(1073)
3 4hat_C Exportin-1; heat repeat 100.0 4.2E-75 1.4E-79 712.5 59.0 751 2-820 148-1006(1023)
4 3ibv_A Exportin-T; karyopherin 100.0 4.8E-74 1.6E-78 703.5 53.3 743 8-820 146-977 (980)
5 2x19_B Importin-13; nuclear tr 100.0 1.4E-71 4.6E-76 694.7 75.4 756 4-821 159-954 (963)
6 3m1i_C Exportin-1; heat repeat 100.0 1E-63 3.5E-68 626.1 62.0 777 5-838 151-1048(1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 7.1E-46 2.4E-50 466.0 32.2 756 4-821 146-1160(1204)
8 4fdd_A Transportin-1; heat rep 100.0 2.3E-25 7.8E-30 273.7 43.3 653 43-797 124-821 (852)
9 2bpt_A Importin beta-1 subunit 99.9 6.3E-23 2.2E-27 252.4 50.0 578 43-689 130-734 (861)
10 1qgr_A Protein (importin beta 99.9 2.7E-21 9.4E-26 238.3 48.1 583 43-689 124-745 (876)
11 1wa5_C Importin alpha RE-expor 99.9 6.7E-22 2.3E-26 245.5 41.3 489 156-707 263-791 (960)
12 1w9c_A CRM1 protein, exportin 99.8 1E-18 3.6E-23 180.8 26.5 227 581-820 68-318 (321)
13 4fdd_A Transportin-1; heat rep 99.8 4.1E-15 1.4E-19 182.5 47.6 623 60-798 105-782 (852)
14 1u6g_C TIP120 protein, CAND1; 99.5 7.8E-12 2.7E-16 159.4 37.4 558 44-707 130-721 (1230)
15 2bpt_A Importin beta-1 subunit 99.5 5.3E-10 1.8E-14 137.0 52.5 545 42-666 174-813 (861)
16 1qgr_A Protein (importin beta 99.5 2.1E-10 7.3E-15 140.9 48.9 574 41-708 166-828 (876)
17 1ibr_B P95, importin beta-1 su 99.5 9.1E-13 3.1E-17 149.3 20.3 321 43-412 124-461 (462)
18 1u6g_C TIP120 protein, CAND1; 99.4 1.7E-09 5.9E-14 137.8 43.7 560 48-707 8-637 (1230)
19 1b3u_A Protein (protein phosph 99.3 5.7E-09 1.9E-13 121.8 35.7 496 44-667 46-551 (588)
20 1b3u_A Protein (protein phosph 98.9 8.1E-07 2.8E-11 103.4 32.1 435 45-595 85-528 (588)
21 1wa5_C Importin alpha RE-expor 98.8 6.8E-05 2.3E-09 92.7 43.9 269 333-615 471-794 (960)
22 1ibr_B P95, importin beta-1 su 98.3 1.5E-05 5E-10 89.6 18.2 303 296-616 109-441 (462)
23 2qk1_A Protein STU2; STU2P, XM 98.2 6.1E-06 2.1E-10 84.5 12.4 185 331-533 27-224 (249)
24 2x1g_F Cadmus; transport prote 98.0 0.078 2.7E-06 65.3 57.1 301 371-708 476-815 (971)
25 2qk2_A LP04448P; mini spindles 98.0 2.7E-05 9.4E-10 79.4 10.6 178 331-532 26-208 (242)
26 2x19_B Importin-13; nuclear tr 97.8 0.15 5.1E-06 62.7 55.9 577 45-708 23-715 (963)
27 4b8j_A Importin subunit alpha- 97.7 0.02 6.8E-07 65.2 31.1 384 90-574 76-496 (528)
28 2jdq_A Importin alpha-1 subuni 97.7 0.0018 6.3E-08 72.0 21.7 344 49-477 22-391 (450)
29 1w63_A Adapter-related protein 97.7 0.094 3.2E-06 60.9 35.7 302 312-667 104-417 (618)
30 1wa5_B Importin alpha subunit; 97.6 0.0086 2.9E-07 68.4 25.8 341 49-478 89-459 (530)
31 2qk1_A Protein STU2; STU2P, XM 97.5 0.00049 1.7E-08 70.2 12.3 175 316-501 61-245 (249)
32 2jdq_A Importin alpha-1 subuni 97.5 0.017 6E-07 63.9 24.9 309 90-483 22-354 (450)
33 2vgl_B AP-2 complex subunit be 97.3 0.029 9.8E-07 65.0 25.2 210 331-575 97-312 (591)
34 4b8j_A Importin subunit alpha- 97.3 0.059 2E-06 61.3 27.0 335 331-708 85-444 (528)
35 2vgl_B AP-2 complex subunit be 97.2 0.014 4.9E-07 67.5 21.2 128 331-474 402-530 (591)
36 2qk2_A LP04448P; mini spindles 97.2 0.019 6.4E-07 58.0 19.4 187 372-586 28-218 (242)
37 1wa5_B Importin alpha subunit; 97.2 0.13 4.4E-06 58.5 28.3 333 331-707 98-457 (530)
38 3m1i_C Exportin-1; heat repeat 97.1 0.063 2.1E-06 66.8 26.6 318 371-707 465-833 (1049)
39 4hat_C Exportin-1; heat repeat 97.1 0.033 1.1E-06 68.4 23.3 309 372-707 466-833 (1023)
40 2vgl_A Adaptor protein complex 96.8 0.68 2.3E-05 53.6 30.3 149 313-475 109-269 (621)
41 3ibv_A Exportin-T; karyopherin 96.7 0.37 1.3E-05 59.0 28.3 153 412-577 712-873 (980)
42 3tpo_A Importin subunit alpha- 96.7 0.27 9.3E-06 55.8 25.5 133 331-476 304-449 (529)
43 3ul1_B Importin subunit alpha- 96.5 0.36 1.2E-05 54.5 24.6 335 60-477 72-431 (510)
44 3tpo_A Importin subunit alpha- 96.4 0.71 2.4E-05 52.3 26.3 390 89-572 77-495 (529)
45 3gjx_A Exportin-1; transport, 95.9 4.9 0.00017 49.2 31.5 318 372-708 492-860 (1073)
46 3ul1_B Importin subunit alpha- 95.7 1.4 4.9E-05 49.5 24.5 314 357-709 100-432 (510)
47 2z6g_A B-catenin; FULL-length, 95.3 6.7 0.00023 46.6 30.9 115 331-448 410-540 (780)
48 4hxt_A De novo protein OR329; 95.0 0.86 3E-05 45.3 17.7 219 331-576 13-243 (252)
49 2z6h_A Catenin beta-1, beta-ca 94.7 8.1 0.00028 44.6 37.7 306 86-480 12-340 (644)
50 1w63_A Adapter-related protein 94.7 8.1 0.00028 44.4 32.4 123 298-431 126-264 (618)
51 2of3_A ZYG-9; multifunctional 93.9 1.1 3.6E-05 45.4 14.7 136 195-390 99-238 (266)
52 4db6_A Armadillo repeat protei 93.8 0.21 7.2E-06 48.6 9.4 137 331-478 23-169 (210)
53 1xqr_A HSPBP1 protein; armadil 93.8 0.75 2.6E-05 47.7 14.0 136 331-478 93-240 (296)
54 3u0r_A Apoptosis inhibitor 5; 93.6 9.8 0.00034 41.3 22.5 275 372-671 41-365 (507)
55 2iw3_A Elongation factor 3A; a 93.4 0.34 1.2E-05 58.3 11.8 213 334-575 109-325 (986)
56 2iw3_A Elongation factor 3A; a 93.1 2.1 7.2E-05 51.5 18.0 243 338-613 70-321 (986)
57 4db8_A Armadillo-repeat protei 92.1 0.89 3E-05 45.4 11.5 217 331-572 23-249 (252)
58 1xqr_A HSPBP1 protein; armadil 91.6 7.9 0.00027 39.8 18.1 105 357-477 81-197 (296)
59 4db6_A Armadillo repeat protei 91.3 1.1 3.9E-05 43.2 10.9 134 331-475 65-208 (210)
60 4db8_A Armadillo-repeat protei 91.1 0.84 2.9E-05 45.6 10.0 135 331-478 65-211 (252)
61 1jdh_A Beta-catenin; beta-cate 90.3 25 0.00087 38.9 39.4 305 87-480 16-343 (529)
62 1w9c_A CRM1 protein, exportin 90.2 3.9 0.00014 42.2 13.9 173 60-256 44-225 (321)
63 1xm9_A Plakophilin 1; armadill 89.1 29 0.001 37.9 26.4 351 332-707 14-449 (457)
64 1jdh_A Beta-catenin; beta-cate 88.7 33 0.0011 37.9 24.1 335 331-707 28-385 (529)
65 3ltj_A Alpharep-4; protein eng 87.1 7.3 0.00025 37.0 13.1 109 331-474 56-165 (201)
66 2z6h_A Catenin beta-1, beta-ca 84.7 61 0.0021 37.1 25.9 250 317-593 142-405 (644)
67 3ltm_A Alpha-REP4; protein eng 84.5 10 0.00035 36.3 12.8 109 331-474 61-170 (211)
68 2z6g_A B-catenin; FULL-length, 84.3 72 0.0025 37.6 36.7 135 332-480 331-476 (780)
69 1oyz_A Hypothetical protein YI 80.6 18 0.00062 36.3 13.5 118 331-475 102-220 (280)
70 3ltm_A Alpha-REP4; protein eng 78.7 14 0.00048 35.3 11.3 109 331-474 30-139 (211)
71 1oyz_A Hypothetical protein YI 78.6 24 0.00082 35.3 13.6 118 331-474 65-186 (280)
72 3ltj_A Alpharep-4; protein eng 78.3 14 0.00048 34.9 11.1 110 331-475 25-135 (201)
73 1vsy_4 Proteasome activator BL 76.9 1.2E+02 0.0042 35.6 24.4 312 238-576 294-689 (799)
74 2vgl_A Adaptor protein complex 74.7 1.2E+02 0.0042 34.5 30.4 129 332-479 51-180 (621)
75 1te4_A Conserved protein MTH18 67.8 6.2 0.00021 34.7 5.1 77 331-427 53-130 (131)
76 1xm9_A Plakophilin 1; armadill 67.2 16 0.00053 40.2 9.3 114 332-450 56-197 (457)
77 3tt9_A Plakophilin-2; cell adh 66.6 26 0.00088 34.5 9.8 142 318-472 55-225 (233)
78 2db0_A 253AA long hypothetical 64.6 19 0.00065 33.8 7.5 120 340-477 127-247 (253)
79 4hxt_A De novo protein OR329; 63.5 1.1E+02 0.0036 29.4 20.2 232 404-669 4-246 (252)
80 3nmw_A APC variant protein; AR 62.5 55 0.0019 34.4 12.1 140 332-480 183-338 (354)
81 4ffb_C Protein STU2; tubulin f 55.6 1.3E+02 0.0043 30.0 13.2 137 331-479 66-215 (278)
82 4atg_A TAF6; transcription, TF 54.1 1.5E+02 0.005 28.1 13.1 129 310-445 39-178 (196)
83 4ady_A RPN2, 26S proteasome re 52.1 2.4E+02 0.0082 33.7 16.0 105 335-452 593-698 (963)
84 3nmz_A APC variant protein; pr 51.8 63 0.0021 35.3 10.6 142 331-479 298-453 (458)
85 3nmz_A APC variant protein; pr 51.5 93 0.0032 33.9 11.9 144 317-477 245-409 (458)
86 4ffb_C Protein STU2; tubulin f 49.4 1.5E+02 0.0052 29.4 12.6 188 460-667 22-215 (278)
87 3nmw_A APC variant protein; AR 47.0 98 0.0034 32.4 10.9 143 317-476 129-292 (354)
88 3now_A UNC-45 protein, SD10334 46.2 4.2E+02 0.014 31.0 43.6 449 87-592 9-546 (810)
89 3oc3_A Helicase MOT1, MOT1; re 45.7 50 0.0017 36.8 8.1 109 331-452 185-309 (800)
90 3l6x_A Catenin delta-1; cateni 41.5 4.2E+02 0.014 29.7 28.7 370 317-729 50-488 (584)
91 3oc3_A Helicase MOT1, MOT1; re 34.0 3.1E+02 0.011 30.7 11.9 101 336-453 244-345 (800)
92 1l6x_B Minimized B-domain of p 32.8 32 0.0011 22.1 2.4 17 778-796 15-31 (34)
93 2npp_B PP2A, B subunit, serine 31.1 4.8E+02 0.016 28.1 13.1 51 721-771 355-409 (449)
94 2of3_A ZYG-9; multifunctional 26.9 1.1E+02 0.0039 30.5 6.8 65 48-118 168-239 (266)
95 3a6p_A Exportin-5; exportin-5, 26.4 9.8E+02 0.034 29.4 46.9 74 560-633 599-678 (1204)
96 1te4_A Conserved protein MTH18 24.5 1.6E+02 0.0054 25.2 6.8 47 331-385 84-130 (131)
97 4atg_A TAF6; transcription, TF 23.8 3.7E+02 0.013 25.3 9.4 145 336-502 24-180 (196)
98 3opb_A SWI5-dependent HO expre 22.9 2.9E+02 0.0099 32.1 10.1 153 340-505 579-759 (778)
99 2eqo_A TNF receptor-associated 22.9 71 0.0024 28.2 3.8 51 784-834 72-138 (140)
100 2db0_A 253AA long hypothetical 22.6 4.9E+02 0.017 24.5 16.5 199 331-572 43-244 (253)
101 1zda_A Mini protein A domain, 20.5 40 0.0014 22.2 1.2 15 781-795 21-35 (38)
No 1
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-76 Score=734.92 Aligned_cols=758 Identities=20% Similarity=0.332 Sum_probs=631.7
Q ss_pred CCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---h-------hhHHHHHHHHHHHHh
Q 003155 5 PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI---N-------ELKEQVLEAFASWLR 74 (843)
Q Consensus 5 ~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~-------~~~~~~L~cl~sWi~ 74 (843)
+......|++|+.+|||+.+.+ +..||..+++.+....+.|++++.++++. + ++...+++|+.+|+.
T Consensus 142 ~~~~~~~l~iL~~l~EEi~~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~ 218 (971)
T 2x1g_F 142 DVQLWIMLEVLTAIPEEAQVIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIK 218 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHh
Confidence 4567789999999999988554 46788889999999999999999988864 2 588999999999999
Q ss_pred cCCCCCCcccccchhHHHHHhhc------------------CCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHH
Q 003155 75 LKHRIPGSVLASHPLVLTALSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIV 136 (843)
Q Consensus 75 ~~~~i~~~~l~~~~ll~~~~~~L------------------~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~ 136 (843)
++ ++|.+ ...++++.+|+ | .+++++++|++|+.++++.... .+..+++..++
T Consensus 219 ~~-~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~ 288 (971)
T 2x1g_F 219 NI-GYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLI 288 (971)
T ss_dssp HS-CCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHH
T ss_pred hC-CcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHH
Confidence 63 46666 46789999988 6 4678999999999999986432 14567888889
Q ss_pred HHHHhhHHHHhh--ccCC---HHHHHHHHHHHHHHhhHHHHHHH----c----CCchHHHHHHHHHhhccC----C-Ccc
Q 003155 137 PQIMSLKAHLTD--SSKD---EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYD 198 (843)
Q Consensus 137 ~~~~~l~~~l~~--~~~d---~~~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~----~-~~~ 198 (843)
|.++++.+.+.. .++| ++....+|++++.+++.+...+. + .++++..+++.|+.++.+ + +++
T Consensus 289 ~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~ 368 (971)
T 2x1g_F 289 KMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES 368 (971)
T ss_dssp HHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCT
T ss_pred HHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchh
Confidence 988887665532 2344 37888999999999999988776 3 123567899999999987 3 789
Q ss_pred hhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhh
Q 003155 199 IASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTR 276 (843)
Q Consensus 199 vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d--~~~~~~e~~e~f~~~R 276 (843)
++..+++||+.+++...... .+ .........++|++.+++++++.|+.||+| +++|+.+|+++|+.||
T Consensus 369 v~~~~l~fw~~l~~~~~~~~------~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 369 CSTMALAFWYMLQDEVFAMS------ND----EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp THHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcc------cc----cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 99999999999998543211 00 001234567899999999999999999985 4567888889999999
Q ss_pred ccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccc
Q 003155 277 YDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA 356 (843)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~ 356 (843)
++ ++|++.+++.++| +.+++.+++.+.+.+.+....+.+|+.+||++|++++|++++....+
T Consensus 439 ~~-----------------~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~ 500 (971)
T 2x1g_F 439 QD-----------------ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK 500 (971)
T ss_dssp HH-----------------HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------
T ss_pred HH-----------------HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh
Confidence 99 9999999999999 78999999988887743111147899999999999999999998877
Q ss_pred cchHHHhhhccCCC-C--cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 003155 357 EVMPQVMALLPKLP-Q--QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR 433 (843)
Q Consensus 357 ~~l~~l~~~l~~lp-~--~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~ 433 (843)
+.++++++.+++++ . ||.||.++|+++|+|++|+..||+ ++++++++++++++ ++ |+.+||+||.+||++|+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQ 575 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHH
Confidence 88999998776666 3 899999999999999999999986 99999999999995 66 99999999999999999
Q ss_pred hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccC
Q 003155 434 KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 513 (843)
Q Consensus 434 ~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~ 513 (843)
..+.||++.|++.+.+++..+ +++.+++..+++++|.+++++|+++..+++..++.|+++.++++.+....+. ..
T Consensus 576 ~~l~p~~~~ll~~l~~~l~~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~--~~ 650 (971)
T 2x1g_F 576 LQLKPYADPLLNACHASLNTG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTP--AA 650 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CH--HH
T ss_pred HhccccHHHHHHHHHHHHcCC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--hh
Confidence 999999999999999998752 4678999999999999999998888999999999999999999876542111 11
Q ss_pred chhhHHHHHHHHHhhhccCC-----------cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhh
Q 003155 514 PRDLTVHIDRFAYIFRYVNH-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGI 582 (843)
Q Consensus 514 ~~~~~~~l~~l~~~~~~~~~-----------~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p 582 (843)
.......++.|+.+++.++. ++++.++.+++||++..+++.+..+.+++|++|++++++++++|..+.|
T Consensus 651 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p 730 (971)
T 2x1g_F 651 RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQP 730 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CT
T ss_pred HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 23456678999999887753 4678889999999999999988888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccc--ccCCcCCchHHHHHHHHH
Q 003155 583 TIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLAS 660 (843)
Q Consensus 583 ~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~--~~~~~~pD~~~~~f~l~~ 660 (843)
++|++++.+...|++.+++++|++++.++..||.++.+.+.+.+++..++.+++.++++. ++++++||++++||+|+.
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~ 810 (971)
T 2x1g_F 731 MLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLT 810 (971)
T ss_dssp HHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHH
Confidence 999999999999999999999999999999999987788999999999999999988753 356789999999999999
Q ss_pred HHHhhCCCcccCcCC-cHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHH
Q 003155 661 RCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIAS 739 (843)
Q Consensus 661 ~~~~~~p~~~~~s~~-l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~ 739 (843)
+++++||..+++++. ++.++++++.+++++|+++.+++++||..++++.+ ..+.+++++.++|+.|+..++.+
T Consensus 811 ~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~------~~~~~~~~~~~~g~~l~~~l~~~ 884 (971)
T 2x1g_F 811 QIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR------NHAHVTEVVLATGEQTLYTAMMC 884 (971)
T ss_dssp HHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999898 99999999999999999999999999999998632 12347899999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHH
Q 003155 740 LTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDV 817 (843)
Q Consensus 740 l~~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~--~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~ 817 (843)
++|..||+.+++++++|+++..++|+.++.||.+++. .||+.++++++|++|+++|++.+ .++|+||+.+++||..
T Consensus 885 ~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~--~~~r~~~~~~~~f~~~ 962 (971)
T 2x1g_F 885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEK--VNKRLLQQHLSEMAMK 962 (971)
T ss_dssp HHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHH
T ss_pred hcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHH--hChHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999985 89999999999999999998753 3789999999999999
Q ss_pred Hhhh
Q 003155 818 CRRN 821 (843)
Q Consensus 818 ~r~~ 821 (843)
|||.
T Consensus 963 ~r~~ 966 (971)
T 2x1g_F 963 TRGL 966 (971)
T ss_dssp HHC-
T ss_pred HcCc
Confidence 9996
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=8.9e-76 Score=713.10 Aligned_cols=789 Identities=15% Similarity=0.230 Sum_probs=621.7
Q ss_pred CCCchHHHHHHhhhccccccCc-cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHhcCCCC
Q 003155 4 HPEFVPGFLELLTVLPEEVFNY-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRI 79 (843)
Q Consensus 4 ~~~~~~~~L~~L~~lpEE~~~~-~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~~~~~~~L~cl~sWi~~~~~i 79 (843)
++......|.+|+.|+||+.++ +..++..||.++++.|...++.|++++..++++ +++...+|+|+++|++| +
T Consensus 162 ~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW---I 238 (1073)
T 3gjx_A 162 SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW---I 238 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---S
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh---c
Confidence 4566778999999999999876 344678899999999999999999999999865 35778889999999885 7
Q ss_pred CCcccccchhHHHH-HhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHH-----------hhHHHHh
Q 003155 80 PGSVLASHPLVLTA-LSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIM-----------SLKAHLT 147 (843)
Q Consensus 80 ~~~~l~~~~ll~~~-~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~-----------~l~~~l~ 147 (843)
+.+++.++++++.+ ++.|.++++|++|++||++++++..+ +..+.+..++..++ ++.+.+.
T Consensus 239 ~i~~i~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~-------~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~ 311 (1073)
T 3gjx_A 239 PLGYIFETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVS-------QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 311 (1073)
T ss_dssp CTHHHHSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSG-------GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH
T ss_pred CHHHhccchHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHHHHHHHHhcCCchhHHHHHh
Confidence 88888899999988 79999999999999999999987422 22333444444433 2333344
Q ss_pred hc-cCCHHHHHHHHHHHHHHhhHHHHHHHcCCc---hHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccccccccc
Q 003155 148 DS-SKDEEDVKAIARLFADMGDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISF 223 (843)
Q Consensus 148 ~~-~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~ 223 (843)
.+ ++|+++++++|++|+++|++|...+..+++ .....+++++.|+.+++.+++++||+||+.+.+.+++...+..
T Consensus 312 ~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~- 390 (1073)
T 3gjx_A 312 NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFST- 390 (1073)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCC-
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccc-
Confidence 33 345588999999999999999999987754 3466788999999999999999999999999999986432110
Q ss_pred Cccc----chHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHH
Q 003155 224 GNEA----SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADV 299 (843)
Q Consensus 224 ~~~~----~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~ 299 (843)
+..| +.....+.+...|+|+|.+|+.+++.||.||+|....++|++|.||++|+| ++++ .+|+.++|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d-------~~~~-~ly~~mrd~ 462 (1073)
T 3gjx_A 391 SASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKD-------TDSI-NLYKNMRET 462 (1073)
T ss_dssp CCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSS-------CHHH-HHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhh-------cchH-HHHHHHHHH
Confidence 0000 000001234567999999999999999999997543345666778899887 2222 256678888
Q ss_pred HHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccCCCCc------
Q 003155 300 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQ------ 372 (843)
Q Consensus 300 l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~lp~~------ 372 (843)
+.+++++.+ ++++.++++.+.+.+.. +.++|+.+||++|++|+||+++.++ +++++|++++.|.++|+|
T Consensus 463 L~~lt~l~~-~~~~~i~~~~l~~~~~~---~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 463 LVYLTHLDY-VDTEIIMTKKLQNQVNG---TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHHHCH-HHHHHHHHHHHHHHHTS---CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHhcCCH-HHHHHHHHHHHHHHhcC---CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccch
Confidence 888776555 78999999999876542 2689999999999999999888864 678999999999887642
Q ss_pred -HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc--------CCHHH
Q 003155 373 -PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDG 442 (843)
Q Consensus 373 -~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~--------~~~~~ 442 (843)
+.++.++|+++|||++|+..||+ +|++++++++++++++ ++|+.+||.||.+||++|+.+++ ||+++
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h~~---~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~ 615 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAHWK---FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDE 615 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHH---HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHhCHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHH
Confidence 57899999999999999999997 9999999999999864 34999999999999999999884 58999
Q ss_pred HHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhHHHHHHHHHHhcCCcccccc-Cc---hhh
Q 003155 443 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKK-HP---RDL 517 (843)
Q Consensus 443 li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~-~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~-~~---~~~ 517 (843)
|++.+.++.. +++.++...+|+|+|++|+++|++. ...+++.++.|..++|++++++...+.+.. +. +++
T Consensus 616 il~~~~~~~~-----~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l 690 (1073)
T 3gjx_A 616 ILNNINTIIC-----DLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQL 690 (1073)
T ss_dssp HHTSHHHHHT-----TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHH
Confidence 9999988864 6889999999999999999999866 799999999999999999997543222111 11 122
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCH-------------HHHHHHHHHHHHHH-Hhh----hh-
Q 003155 518 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM-------------RTMESLCRACKYAV-RTS----KR- 578 (843)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~-------------~i~e~~~~~l~~~i-~~~----~~- 578 (843)
...+++.+.+..++ ++++.+++..+|+-+..+.+.|.... ....+.||++|+.+ +.. +.
T Consensus 691 ~~il~~n~~v~~~~--g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~ 768 (1073)
T 3gjx_A 691 GSILKTNVRACKAV--GHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS 768 (1073)
T ss_dssp HHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhHHHHhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22233333333333 47788888888886666555443211 02347889999654 222 21
Q ss_pred -----hhhhhHHHHHHHHHHHHhh----cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCC
Q 003155 579 -----FMGITIGAILEEIQGLYQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 649 (843)
Q Consensus 579 -----~~~p~l~~l~~~l~~~~~~----~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~p 649 (843)
....++|++++.++..|++ .+++++|++.+++|+++|.. +.+.+..+++.++.+|+++++ +++.++|
T Consensus 769 ~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~--~~~~~~~il~~vf~~Tl~mi~--~~f~~~P 844 (1073)
T 3gjx_A 769 NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYP 844 (1073)
T ss_dssp SCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGG--TGGGHHHHHHHHHHHHHHHHS--SCSSSCH
T ss_pred CCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHh--CCcccCc
Confidence 1457789999999999998 58999999999999999986 889999999999999999998 6899999
Q ss_pred chHHHHHHHHHHHHhhCCCcccC--cCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhh
Q 003155 650 DVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIP 727 (843)
Q Consensus 650 D~~~~~f~l~~~~~~~~p~~~~~--s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~ 727 (843)
|++.+||+|+.++..+|+..|++ ++.+..++++++||+++.++++..++++++.++++.... .+ +..++++++
T Consensus 845 e~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~--~~---~~~~~F~~~ 919 (1073)
T 3gjx_A 845 EHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ--EE---AAAQSFYQT 919 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT--CH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc--Ch---HHHHHHHHH
Confidence 99999999999999999998877 446899999999999999999999999999999975432 22 347899999
Q ss_pred hhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHh-----------------hHHHHHHHHHHH-hhCCCCCCCHHHHH
Q 003155 728 RGASITRILIASLTGALPSSRLETVTYALLALTRAY-----------------GVRSLEWAKESV-SLIPLTALAEVERS 789 (843)
Q Consensus 728 ~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~-----------------~~~~~~wl~~~l-~~~P~~~~t~~~~~ 789 (843)
|+..++..+|..+++..|.+++...+.+|..|...- ...+++|+.+.| +.||+ ++++|.+
T Consensus 920 ~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~--~~~~qi~ 997 (1073)
T 3gjx_A 920 YFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPH--LQDAQVK 997 (1073)
T ss_dssp HHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTT--SCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCCC--CCHHHHH
Confidence 999999999999999999999999999999996652 235789999988 69997 9999999
Q ss_pred HHHHHHHHHhcCCCchhhhHHHHHHHHHHhhh------------------------hhHHHHHHhccCCCCcc
Q 003155 790 RFLQALSEAASGVDVNAAMAPVEELSDVCRRN------------------------RTVQEIVQGALKPLELN 838 (843)
Q Consensus 790 ~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r~~------------------------~~~~~~~~~~~~~~~~~ 838 (843)
.|++.+++. .++..+||..+|||.+..|.- +..+..|+|.++|+|++
T Consensus 998 ~fv~~l~~~--~~d~~~f~~~lrDFli~~ke~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 1068 (1073)
T 3gjx_A 998 LFVTGLFSL--NQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIP 1068 (1073)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHHTSCCTTTCCTTCTTHHHHHHHHHHHHHHHHSCC-----------
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHhHHhcCCCCCCccccC
Confidence 999999986 579999999999999987761 11123489999999985
No 3
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=4.2e-75 Score=712.53 Aligned_cols=751 Identities=14% Similarity=0.178 Sum_probs=612.8
Q ss_pred CCCCCchHHHHHHhhhccccccCc-cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHhcCC
Q 003155 2 NSHPEFVPGFLELLTVLPEEVFNY-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKH 77 (843)
Q Consensus 2 ~~~~~~~~~~L~~L~~lpEE~~~~-~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~~~~~~~L~cl~sWi~~~~ 77 (843)
++++.....+|.+|+.|+||+.+. +..++..||.++++.|..+++.|++++.+++++ +++...+|+|+.+|++|
T Consensus 148 ~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W-- 225 (1023)
T 4hat_C 148 SSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW-- 225 (1023)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--
Confidence 456667888999999999999874 334678999999999999999999999999975 36888999999999995
Q ss_pred CCCCcccccchhHHHHH-hhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHH------------HhhHH
Q 003155 78 RIPGSVLASHPLVLTAL-SSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQI------------MSLKA 144 (843)
Q Consensus 78 ~i~~~~l~~~~ll~~~~-~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~------------~~l~~ 144 (843)
++.+.+.++++++.+| ++|.+++++++|++||++++++.... +. .+..+.+..+++.. .++.+
T Consensus 226 -I~i~~i~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~-~~--~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~ 301 (1023)
T 4hat_C 226 -IPYRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQ-DN--DLIKRQTVLFFQNTLQQIATSVMPVTADLKA 301 (1023)
T ss_dssp -SCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCS-SC--HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHH
T ss_pred -CCHHHhcchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCC-ch--HHHHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 8888888899999999 99999999999999999999854310 00 01112333333332 34556
Q ss_pred HHhhc-cCCHHHHHHHHHHHHHHhhHHHHHHHcCCc---hHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccc
Q 003155 145 HLTDS-SKDEEDVKAIARLFADMGDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSY 220 (843)
Q Consensus 145 ~l~~~-~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~ 220 (843)
.+..+ .+|++.++++|++++++|++|...+..++. ....++++|+.++.+++.+++++|++||+.+++.++..+
T Consensus 302 ~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~-- 379 (1023)
T 4hat_C 302 TYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP-- 379 (1023)
T ss_dssp HHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTST--
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhch--
Confidence 66654 346788999999999999999998876532 123456799999999999999999999999999886421
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------CCCC------ChhhhHHhHhhhccccccCCCcc
Q 003155 221 ISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD-------YQDL------SLEDLKEFKHTRYDLACCSSSTL 287 (843)
Q Consensus 221 ~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d-------~~~~------~~e~~e~f~~~R~~~~~~~~~~~ 287 (843)
.+...|+|+|.+|++++++||+||+| ..+| +.|+.+.|+.+|
T Consensus 380 --------------~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----------- 434 (1023)
T 4hat_C 380 --------------LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----------- 434 (1023)
T ss_dssp --------------TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH-----------
T ss_pred --------------HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH-----------
Confidence 12467999999999999999999983 2334 445666777665
Q ss_pred hhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhc
Q 003155 288 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALL 366 (843)
Q Consensus 288 ~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l 366 (843)
|+|.+++.+.| +++++++.+.+.+.+.+ ++++|+.+||++||+|+|++++.++ ++++++++++.|
T Consensus 435 ----------d~L~~l~~l~~-~~~~~~~~~~l~~~l~~---~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~L 500 (1023)
T 4hat_C 435 ----------EVLVYLTHLNV-IDTEEIMISKLARQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1023)
T ss_dssp ----------HHHHHHHHHCH-HHHHHHHHHHHHHHHSS---TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhccCH-HHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Confidence 57899999888 57999999999887642 2578999999999999999999876 678899999988
Q ss_pred cCCCC-------cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc-
Q 003155 367 PKLPQ-------QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC- 437 (843)
Q Consensus 367 ~~lp~-------~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~- 437 (843)
.+++. +++++.|+||++|||++|+..||+ +|++++++++++|+++ ++|+.+||+||++||++|+.+++
T Consensus 501 l~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~---~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~ 577 (1023)
T 4hat_C 501 LDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI 577 (1023)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred HHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77653 368999999999999999999997 9999999999999754 45999999999999999999884
Q ss_pred -------CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhHHHHHHHHHHhcCCccc
Q 003155 438 -------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEIL 509 (843)
Q Consensus 438 -------~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~-~~~~l~~l~~p~~~~l~~~~~~~~~~~ 509 (843)
||++.|++.+.++.. +++.+++..+|||+|.+|+++|++. ...+++.++.|..++|+++.++...++
T Consensus 578 ~~~~e~~p~~~~il~~l~~~~~-----~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~ 652 (1023)
T 4hat_C 578 QQPRESEPFIQTIIRDIQKTTA-----DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP 652 (1023)
T ss_dssp CCTTCSSCHHHHHHHTHHHHHT-----TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCT
T ss_pred cCCCCCchhHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence 799999999998874 5788999999999999999999765 888999999999999999986432211
Q ss_pred cc----cCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHH--H-----------HHHHHHHHHHH
Q 003155 510 QK----KHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR--T-----------MESLCRACKYA 572 (843)
Q Consensus 510 ~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~--i-----------~e~~~~~l~~~ 572 (843)
+- ...+.+...+++++.++++++ +++.++++.+|+.+..+++.|..... + ..+.||++|+.
T Consensus 653 ~~~~d~~~~~~l~~il~~~~~v~~~lg--~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~ 730 (1023)
T 4hat_C 653 TLLLDSETVKIIANIIKTNVAVCTSMG--ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKE 730 (1023)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHH
Confidence 10 012234444677777776654 67888888888888777766632110 0 22677787765
Q ss_pred HHh-h----h------hhhhhhHHHHHHHHHHHHhhc----CCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHH
Q 003155 573 VRT-S----K------RFMGITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTC 637 (843)
Q Consensus 573 i~~-~----~------~~~~p~l~~l~~~l~~~~~~~----~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~ 637 (843)
+-. . + .....++|++++.++..|.++ +++++|++.+++|+++|.. +.+.+..+++.++.+|++
T Consensus 731 il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~--~~~~~~~il~~vf~~Tl~ 808 (1023)
T 4hat_C 731 ILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLD 808 (1023)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHH
Confidence 321 1 1 113467899999999999986 5699999999999999975 899999999999999999
Q ss_pred hhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcC--CcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCch
Q 003155 638 LLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSS--VFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGE 715 (843)
Q Consensus 638 ~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~--~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~ 715 (843)
+++ +++.++||++.+||+|+.+++++||..|++.+ .+..+++++++|++++|+++..++++|+.++++.....+.+
T Consensus 809 mi~--~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~ 886 (1023)
T 4hat_C 809 MIN--KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNV 886 (1023)
T ss_dssp HHS--SCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHh--cccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCh
Confidence 999 68999999999999999999999999887744 79999999999999999999999999999999754321122
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHh---------------------hHHHHHHHHHH
Q 003155 716 EFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAY---------------------GVRSLEWAKES 774 (843)
Q Consensus 716 ~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~---------------------~~~~~~wl~~~ 774 (843)
+ ..++++++|+..++..+|..+++..|.+++...+.+|+.|...- ...+++|+.+.
T Consensus 887 ~---~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 963 (1023)
T 4hat_C 887 P---FANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANM 963 (1023)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHH
Confidence 2 37889999999999999999999999999999999999987642 23578999998
Q ss_pred Hh-hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhh
Q 003155 775 VS-LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 775 l~-~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r~ 820 (843)
|. .||+ ++++|...|++.+++. .++..+||..+|||.+..|.
T Consensus 964 l~~~fp~--~~~~qi~~fv~~l~~~--~~~~~~f~~~lrdfli~~ke 1006 (1023)
T 4hat_C 964 LSNAFPH--LTSEQIASFLSALTKQ--CKDLVVFKGTLRDFLVQIKE 1006 (1023)
T ss_dssp HHHHCTT--SCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHTTS
T ss_pred HHHhCCC--CCHHHHHHHHHHHHHc--cCCHHHHHHHHHHHhHHhHh
Confidence 85 8997 8999999999999986 57999999999999999876
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=4.8e-74 Score=703.50 Aligned_cols=743 Identities=13% Similarity=0.179 Sum_probs=564.5
Q ss_pred hHHHHHHhhhccccccCccccCCh---hHHHHHHHHHHHh-----HHHHHHHHHHhhh--chhhHHHHHHHHHHHHhcCC
Q 003155 8 VPGFLELLTVLPEEVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKH 77 (843)
Q Consensus 8 ~~~~L~~L~~lpEE~~~~~~~~~~---~~r~~~~~~l~~~-----~~~Vl~~l~~~l~--~~~~~~~~L~cl~sWi~~~~ 77 (843)
+..+|.+|..|+||+++.++..+. .|++++++.|.++ .+.++++|.++.+ ++++...+|+|+.+|+.|
T Consensus 146 ~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w-- 223 (980)
T 3ibv_A 146 SNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW-- 223 (980)
T ss_dssp HHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh--
Confidence 344555555555999987654443 5666788888777 6667777777654 346889999999999995
Q ss_pred CCCCcccccchhHHHHHhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhh---ccCCHH
Q 003155 78 RIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD---SSKDEE 154 (843)
Q Consensus 78 ~i~~~~l~~~~ll~~~~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~---~~~d~~ 154 (843)
++.+.+.++++++.+|+.|.++++|++|++|++++++++++ + +++.+++..+ ++.+.+.. +.+|.|
T Consensus 224 -i~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~--~---~~k~~li~~l-----~L~~~~~~l~~~~~D~d 292 (980)
T 3ibv_A 224 -ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMK--P---LEKLNLLNIL-----NLNLFFSKSQEQSTDPN 292 (980)
T ss_dssp -SCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCC--H---HHHHHHHHHH-----HHHHHHCC-----CCHH
T ss_pred -cCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCC--h---hhHHHHHHHH-----hHHHHHHHHhcccccHH
Confidence 88888888999999999999999999999999999998874 1 1455666543 34444432 257889
Q ss_pred HHHHHHHHHHHHhhHHHHHHHcCC------------chHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccc
Q 003155 155 DVKAIARLFADMGDSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYIS 222 (843)
Q Consensus 155 ~~~~l~~l~~~~~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s 222 (843)
..+++|++++++|+.+... ...+ +++..+++++|.|++|++++|+..+++||+.+.+.+.+.+.
T Consensus 293 ~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~--- 368 (980)
T 3ibv_A 293 FDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS--- 368 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc---
Confidence 9999999999999999988 6554 34568999999999999999999999999999886643110
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHhHhhhccccccCCCcchhhhhhchhhH
Q 003155 223 FGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVAD 298 (843)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~----e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d 298 (843)
+......+++++.+|++++++||+||+|. +|++ ||+++|++||++ ++
T Consensus 369 ----------~~~~~~~~~~~l~~Ll~~li~k~~yp~d~-~~~~~~d~ed~~~F~e~Rk~-----------------l~- 419 (980)
T 3ibv_A 369 ----------SKELSASLKEFLKSLLEAIIKKMKYDESQ-EWDDDPDSEEEAEFQEMRKK-----------------LK- 419 (980)
T ss_dssp ----------SCCCCHHHHHHHHHHHHHHHHTTSCCTTC-CCCCCSSSSTHHHHHHHHHH-----------------HH-
T ss_pred ----------cccccHHHHHHHHHHHHHHHHHccCCCcc-ccccccchhHHHHHHHHHHH-----------------HH-
Confidence 00123568999999999999999999873 3543 678899999999 99
Q ss_pred HHHHHhhhcChhHHHHHHHHHHHHHHhhCC--CCCCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCC-
Q 003155 299 VLIDAASVLGGDATLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKL- 369 (843)
Q Consensus 299 ~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~--~~~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~l- 369 (843)
++.+++.++|++.+++.+++.+...+.+.. ..+.+|+++||+||+++++||++... +++.+|++++++.++
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 899999999999999955555554443211 11467999999999999999999863 346677777765433
Q ss_pred ------CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh--ccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCH
Q 003155 370 ------PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYL 440 (843)
Q Consensus 370 ------p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~--~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~ 440 (843)
++||+||.++|+++|||++|+..||+ +++++++++++ |+++++ +|+.+||+||.+||++|+++|.||+
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~ 576 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYT 576 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 46999999999999999999999997 99999999999 998763 5999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCC-CC---------------ChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhHHHHHHHHHH
Q 003155 441 DGLYNVYRTAVNGEGSL-KV---------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEII 502 (843)
Q Consensus 441 ~~li~~~~~~~~~~~~~-~l---------------~~~~~~~l~eaig~vi~~~--p~~~~~~~l~~l~~p~~~~l~~~~ 502 (843)
+.|++.+.+++...... +- ..++++++|||+|.+++.. |++++..+++.++.|+++++++++
T Consensus 577 ~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l 656 (980)
T 3ibv_A 577 ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL 656 (980)
T ss_dssp HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887631000 00 1347999999999999875 678899999999999999999999
Q ss_pred hcCCcccccc-CchhhHHHHHHHHHhhhccC-CcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhh
Q 003155 503 NQGPEILQKK-HPRDLTVHIDRFAYIFRYVN-HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM 580 (843)
Q Consensus 503 ~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~ 580 (843)
+....+.+.. ...+...+++.+++.|+..+ .++|+...++++|+++..++..|..+..|+|++|++++++++++|..+
T Consensus 657 ~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~ 736 (980)
T 3ibv_A 657 SSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM 736 (980)
T ss_dssp TTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH
Confidence 7654321111 11123333444444444332 246788899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccc----ccCCcCCchHHHHH
Q 003155 581 GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI----EEFTSRPDVADDCF 656 (843)
Q Consensus 581 ~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~----~~~~~~pD~~~~~f 656 (843)
.|++|++++.++..|+..++++||++++++|++||.+ +.+.+.+++.+++++++++|++. +.+++..|+.++||
T Consensus 737 ~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~ 814 (980)
T 3ibv_A 737 LPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYI 814 (980)
T ss_dssp TTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999852 12456788999999
Q ss_pred HHHHHHHhh-CCCcccCc---CCcHHHHHHHH-HhccCCChhHHHHHHHHHHHhhc-cccCCCchhhHHHHHHHHhhhhH
Q 003155 657 LLASRCIRY-CPQLFIPS---SVFPSLVDCSM-IGITVQHREASNSILTFLSDIFD-LAKSCKGEEFLSVRDSVIIPRGA 730 (843)
Q Consensus 657 ~l~~~~~~~-~p~~~~~s---~~l~~i~~~~~-~~l~~~e~~~~~s~~~fl~~li~-~~~~~~~~~~~~~~~~~~~~~g~ 730 (843)
.|+..++++ .+.+|++. +.++.++...+ .+..++|+.+.|+|+.++++++. |+.+...++|. ++
T Consensus 815 ~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~----~f------ 884 (980)
T 3ibv_A 815 SFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFE----NF------ 884 (980)
T ss_dssp HHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHH----HH------
T ss_pred HHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHH----HH------
Confidence 999999985 57777763 45776666555 34557899999999999999998 43222133442 22
Q ss_pred HHHHHHHHHcccCCC------------CCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 003155 731 SITRILIASLTGALP------------SSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEA 798 (843)
Q Consensus 731 ~lv~~ll~~l~~~~p------------~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~~~P~~~~t~~~~~~f~~~l~~~ 798 (843)
++. +..+|+.+| +..+.+++.+++.+..+.|+++.+||.+. .+|+.+++++..+.|+++|..
T Consensus 885 -~~~--~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~--~lp~~~~~~~~~~~~~~~l~~- 958 (980)
T 3ibv_A 885 -TLS--LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTV--YFPTVNFPDVMASEYLQALSN- 958 (980)
T ss_dssp -HHH--HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTTC----CCHHHHHHHC----
T ss_pred -HHH--HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--cCCcCCCCHHHHHHHHHHHhc-
Confidence 222 333334443 22456899999999999999999999874 489999999999999999953
Q ss_pred hcCCCchhhhHHHHHHHHHHhh
Q 003155 799 ASGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 799 ~~~~~~~~~~~~~~~F~~~~r~ 820 (843)
.+.|.||+.++.|....|+
T Consensus 959 ---~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 959 ---LDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp ----------------CHHHHC
T ss_pred ---cchhhHHHHHHHHHHHhhc
Confidence 4678999999999998776
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.4e-71 Score=694.68 Aligned_cols=756 Identities=21% Similarity=0.377 Sum_probs=642.1
Q ss_pred CCCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhch----hhHHHHHHHHHHHHhcCCCC
Q 003155 4 HPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRI 79 (843)
Q Consensus 4 ~~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----~~~~~~L~cl~sWi~~~~~i 79 (843)
++......|.+|+.++||+.+.+. +..||.++++.+....+.|++++.+++++. .+...+++|+.+|++.+ .
T Consensus 159 ~~~~~~~~l~iL~~l~ee~~~~~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~--~ 234 (963)
T 2x19_B 159 GQGRCLALLELLTVLPEEFQTSRL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--V 234 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCC-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSS--C
T ss_pred cHHHHHHHHHHHHhCHHHHhcccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC--C
Confidence 344678999999999999987765 577888889999999999999999998753 38889999999999853 3
Q ss_pred CCcccccchhHHHHHhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhh--ccCCHHHHH
Q 003155 80 PGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKDEEDVK 157 (843)
Q Consensus 80 ~~~~l~~~~ll~~~~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~--~~~d~~~~~ 157 (843)
+ ....+++++.+++.+.+++++++|++|+.++++.... + ...+.+..+++.++++.+.+.. ..+|.+.++
T Consensus 235 ~--~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 306 (963)
T 2x19_B 235 P--LQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDA--Q----RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSH 306 (963)
T ss_dssp C--GGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTG--G----GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHH
T ss_pred C--cccchHHHHHHHHHhCCchHHHHHHHHHHHHHccccc--c----cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHH
Confidence 2 2235889999999999999999999999999975432 1 2345677777777766544432 245778899
Q ss_pred HHHHHHHHHhhHHHHHHHcC---CchHHHHHHHHHhhccCC-----CcchhhhhHHHHHHHHHHhcccccccccCcccch
Q 003155 158 AIARLFADMGDSYVELIATG---SDESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASA 229 (843)
Q Consensus 158 ~l~~l~~~~~e~~~~~l~~~---~~~~~~ll~~ll~~~~~~-----~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~ 229 (843)
.+|++++++++.+...+..+ ++++..++++++.++.+| +++++..+++||+.+++.....++
T Consensus 307 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~---------- 376 (963)
T 2x19_B 307 GICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEA---------- 376 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCH----------
T ss_pred HHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhh----------
Confidence 99999999999999888753 345778999999999984 678999999999999986542110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhc
Q 003155 230 EAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL 307 (843)
Q Consensus 230 ~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d--~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl 307 (843)
..++.....++|++.+|+++++.+|.||+| +++|++||+++|++||++ ++|++.+++.++
T Consensus 377 -~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~-----------------~~~~L~~~~~~~ 438 (963)
T 2x19_B 377 -EKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD-----------------ISDTLMYVYEML 438 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHH-----------------HHHHHHHHHHHc
Confidence 011345567899999999999999999986 346787888899999999 999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCC-CcHHHHHHHHHHHHhh
Q 003155 308 GGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAY 386 (843)
Q Consensus 308 ~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp-~~~~v~~t~~~~ig~y 386 (843)
| +.+++.+.+.+.+.+.+..+ +.+|+.+||++|+++++++++..+.+++++++++.+.+++ +||.||.++++++|+|
T Consensus 439 ~-~~~l~~~~~~l~~~l~~~~~-~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~ 516 (963)
T 2x19_B 439 G-AELLSNLYDKLGRLLTSSEE-PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGAL 516 (963)
T ss_dssp T-HHHHHHHHHHHHHHHHTCCC-SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHT
T ss_pred c-HHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 9 67999999988887743222 5789999999999999999998877889999999888876 5899999999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHH
Q 003155 387 SKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 466 (843)
Q Consensus 387 ~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~ 466 (843)
++|+..||+ ++++++++++++|++++ |+.+||+||.+||++|++.+.||++.+++.+.+++..+ .++.+.+..
T Consensus 517 ~~~l~~~~~---~l~~vl~~l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~ 589 (963)
T 2x19_B 517 SEWLADHPV---MINSVLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMW 589 (963)
T ss_dssp HHHHHHCHH---HHTTTHHHHHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHH
T ss_pred HHHHHhCHH---HHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHH
Confidence 999999985 99999999999998866 99999999999999999999999999999999988642 356789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC-------------
Q 003155 467 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH------------- 533 (843)
Q Consensus 467 l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------- 533 (843)
+++|+|.++++.|.++..+++..++.|+.+.|+++.++..+ ......+...+++|+.+++.++.
T Consensus 590 ~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~ 666 (963)
T 2x19_B 590 LMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN---PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666 (963)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSC---HHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 99999999999987788999999999999999998654321 11122345568999999988752
Q ss_pred -------cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHH
Q 003155 534 -------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYL 606 (843)
Q Consensus 534 -------~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l 606 (843)
++|+..+.+++||++..+++.|..+..+.|.+|+++++++..+|..+.|++|++++.+...|+..+.++++++
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l 746 (963)
T 2x19_B 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL 746 (963)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHH
Confidence 2567889999999999999999988999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCC-cHHHHHHHHH
Q 003155 607 SSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMI 685 (843)
Q Consensus 607 ~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~-l~~i~~~~~~ 685 (843)
++.++..||.++.+.+.+.+++..++..++++++ +++.++||++++||.|+.++++++|..+++++. +..+++++++
T Consensus 747 ~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~ 824 (963)
T 2x19_B 747 TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVL 824 (963)
T ss_dssp HHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHH
Confidence 9999999998776788999999999999999887 567789999999999999999999999988777 9999999999
Q ss_pred hccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhH
Q 003155 686 GITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGV 765 (843)
Q Consensus 686 ~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~ 765 (843)
+++.+|+++.+++++||.++++.... .+ .+++++..+|+.|+..++.+++|..|++.+++++++|+.+..++|.
T Consensus 825 ~l~~~~~~~~~~~l~~l~~l~~~~~~--~~----~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 825 ALKFPEAPTVKASCGFFTELLPRCGE--VE----SVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHGGGTTS--SC----HHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHhcCCC--hH----HHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 99999999999999999999975331 11 3678888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhhh
Q 003155 766 RSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN 821 (843)
Q Consensus 766 ~~~~wl~~~l~--~~P~~~~t~~~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r~~ 821 (843)
.+.+|+.+.++ .||+.++++++|++|++++++. ..++|+||+.++||+..|||.
T Consensus 899 ~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~--~~~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 899 LLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRE--RVNKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp HHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCS--SCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHcCc
Confidence 99999999984 8998889999999999999855 248999999999999999995
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-63 Score=626.06 Aligned_cols=777 Identities=14% Similarity=0.181 Sum_probs=583.5
Q ss_pred CCchHHHHHHhhhccccccCcc-ccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHhcCCCCC
Q 003155 5 PEFVPGFLELLTVLPEEVFNYK-IAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIP 80 (843)
Q Consensus 5 ~~~~~~~L~~L~~lpEE~~~~~-~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---~~~~~~~L~cl~sWi~~~~~i~ 80 (843)
+......|.+|+.|+||+.+.+ ..++..||.++++.+.+..+.|++++.+++++ ++++..+|+|+.+|+.| ++
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w---i~ 227 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW---IP 227 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CC
Confidence 3345678999999999998642 23567888889999999999999999999875 35899999999999985 77
Q ss_pred CcccccchhHHHHH-hhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHHHHh------------hHHHHh
Q 003155 81 GSVLASHPLVLTAL-SSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS------------LKAHLT 147 (843)
Q Consensus 81 ~~~l~~~~ll~~~~-~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~~~~------------l~~~l~ 147 (843)
.+.+.++++++.++ ..+.+++++.+|++|+.++++..++... .+..+.+..+++.+++ +.+.+.
T Consensus 228 ~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~---~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~ 304 (1049)
T 3m1i_C 228 YRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDN---DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA 304 (1049)
T ss_dssp THHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTC---HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcch---hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc
Confidence 67666788999998 4567889999999999999987543110 0112233334444433 223343
Q ss_pred hc-cCCHHHHHHHHHHHHHHhhHHHHHHHcCC---chHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccccccccc
Q 003155 148 DS-SKDEEDVKAIARLFADMGDSYVELIATGS---DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISF 223 (843)
Q Consensus 148 ~~-~~d~~~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~ 223 (843)
.+ ++|++..+++|++++++++.+...+...+ +.+..++++++.++.+++++++..+++||+.+++.++..+
T Consensus 305 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~----- 379 (1049)
T 3m1i_C 305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP----- 379 (1049)
T ss_dssp HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHST-----
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhch-----
Confidence 33 34567788999999999999998887632 2356789999999999999999999999999998763201
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-hhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHH
Q 003155 224 GNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS-LEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLID 302 (843)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~-~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~ 302 (843)
.....+++++.+|+++++.||+||+|. +|. +|+.|.|+++|.| ..+| .+|+.++|++.+
T Consensus 380 -----------~~~~~~~~~l~~Lv~~ll~~m~~~ed~-~~~~dd~~e~~r~~~~d-----~d~~---~~~~~~~~~L~~ 439 (1049)
T 3m1i_C 380 -----------LKKHIYEEICSQLRLVIIENMVRPEEV-LVVENDEGEIVREFVKE-----SDTI---QLYKSEREVLVY 439 (1049)
T ss_dssp -----------TCGGGGHHHHHHHHHHHHHTCCCCTTC-CEEECTTSCEEECSSCC-----HHHH---HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHHHHhcCCCcce-eeeeCCCCcchHhhhcc-----chHH---HHHHHHHHHHHH
Confidence 123567899999999999999999763 453 2445567777654 0111 234458999999
Q ss_pred HhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccCCC-------CcHH
Q 003155 303 AASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP-------QQPQ 374 (843)
Q Consensus 303 ~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~lp-------~~~~ 374 (843)
++.+.| +.+++.+.+.+.+.+.+ +..+|+.+||++|++++|++++... ++.+++++++.+.++| +||.
T Consensus 440 l~~~~~-~~~l~~v~~~l~~~l~~---~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 440 LTHLNV-IDTEEIMISKLARQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHCH-HHHHHHHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHccCH-HHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 997766 78999999999887642 2579999999999999999998765 3456888888765443 2688
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc--------CCHHHHHH
Q 003155 375 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYN 445 (843)
Q Consensus 375 v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~--------~~~~~li~ 445 (843)
++.++|+++|||++|+..||+ +++++++.++.+++++ .+|+.+||+||.+||++|++.+. ||++.|++
T Consensus 516 v~~~~~~~lgry~~~~~~~~~---~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~ 592 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIR 592 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHH---HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence 888999999999999999986 9999999999999874 45999999999999999999986 99999999
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhHHHHHHHHHHhcCCcccccc-C---chhhHHH
Q 003155 446 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKK-H---PRDLTVH 520 (843)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~-~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~-~---~~~~~~~ 520 (843)
.+..++. +++.++...+|||+|.++++.|+ +...+++..++.|++++|++++.+...+++.. . .+++...
T Consensus 593 ~l~~~~~-----~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 667 (1049)
T 3m1i_C 593 DIQKTTA-----DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1049)
T ss_dssp THHHHHT-----TSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred HHHHHHH-----hCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence 9998875 46788899999999999999984 67899999999999999999886433221110 1 1223333
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhh-----------c----CCH--HHHHHHHHHHHHHHHh-------h
Q 003155 521 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR-----------A----WDM--RTMESLCRACKYAVRT-------S 576 (843)
Q Consensus 521 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~-----------~----~~~--~i~e~~~~~l~~~i~~-------~ 576 (843)
+++++.+++.++. .+.+.+..+++-...+++.+ + ..+ ...+.+...+.++++. .
T Consensus 668 l~~~~~~~~~l~~--~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l 745 (1049)
T 3m1i_C 668 IKTNVAVCTSMGA--DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL 745 (1049)
T ss_dssp HHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 5666666666543 22222222222111111110 0 000 1112222222222222 2
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcCCch-----HhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCch
Q 003155 577 KRFMGITIGAILEEIQGLYQQHQQPC-----FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDV 651 (843)
Q Consensus 577 ~~~~~p~l~~l~~~l~~~~~~~~~~~-----~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~ 651 (843)
+..+.|++|++++.++..|++ .+++ +|++++.++..+|.. +.+.+..++..++++++++++ ++++++||+
T Consensus 746 ~~~~~~~~~~~l~~ll~~~~~-~~~~~~~~~~l~l~~~ii~~~~~~--~~~~l~~i~~~l~~~~~~~i~--~~~~~~pd~ 820 (1049)
T 3m1i_C 746 DDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEH 820 (1049)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH-SCGGGCCTHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHh--cchhhCHHH
Confidence 344678899999999999986 3444 999999999999954 788999999999999999997 568899999
Q ss_pred HHHHHHHHHHHHhhCCCcccC-cC-CcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhh
Q 003155 652 ADDCFLLASRCIRYCPQLFIP-SS-VFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRG 729 (843)
Q Consensus 652 ~~~~f~l~~~~~~~~p~~~~~-s~-~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g 729 (843)
+++||.|+.+++++||..+++ ++ .+..+++++++|++++|+++.+++++||.+++++.+....++ ..+.++.++|
T Consensus 821 ~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~---~~~~f~~~~~ 897 (1049)
T 3m1i_C 821 RVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVP---FANEFHKNYF 897 (1049)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHH
Confidence 999999999999999999874 43 489999999999999999999999999999998643211112 3677888999
Q ss_pred HHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHh---------------------hHHHHHHHHHHH-hhCCCCCCCHHH
Q 003155 730 ASITRILIASLTGALPSSRLETVTYALLALTRAY---------------------GVRSLEWAKESV-SLIPLTALAEVE 787 (843)
Q Consensus 730 ~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~---------------------~~~~~~wl~~~l-~~~P~~~~t~~~ 787 (843)
..++..++..+++..|++.++.++++|+.+.... ...+++||.+.+ +.||+ +++++
T Consensus 898 ~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~ 975 (1049)
T 3m1i_C 898 FIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPH--LTSEQ 975 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTT--SCHHH
T ss_pred HHHHHHHHHHHhcchHhhhHHHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCCC--CCHHH
Confidence 9999999999999999999999999999997632 236789999888 68886 89999
Q ss_pred HHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhhhhh------------------------HHHHHHhccCCCCcc
Q 003155 788 RSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRT------------------------VQEIVQGALKPLELN 838 (843)
Q Consensus 788 ~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~r~~~~------------------------~~~~~~~~~~~~~~~ 838 (843)
+++|+++++.. .++..+||+.+||||+.||+... .+..|+|.++|+|++
T Consensus 976 ~~~f~~~l~~~--~~~~~~f~~~~rdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1049)
T 3m1i_C 976 IASFLSALTKQ--YKDLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLEREKAAKIGGLLKPSELD 1048 (1049)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTSSSCCGGGGGGGGGTTTC-------------------------
T ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHHhHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCC
Confidence 99999999976 46788899999999999998521 123689999999874
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=7.1e-46 Score=466.04 Aligned_cols=756 Identities=14% Similarity=0.175 Sum_probs=508.2
Q ss_pred CCCchHHHHHHhhhccccccCccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhc---------------------hhhH
Q 003155 4 HPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI---------------------NELK 62 (843)
Q Consensus 4 ~~~~~~~~L~~L~~lpEE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---------------------~~~~ 62 (843)
++......|.+|..|+||+.+++. ++..||+.+++.|.+..+.|++++.++++. +.+.
T Consensus 146 ~~~~~e~~L~iL~~L~Eev~~~~~-~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~ 224 (1204)
T 3a6p_A 146 GETQTELVMFILLRLAEDVVTFQT-LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVG 224 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHH
Confidence 344567889999999999887643 456888889999999999999988877753 1377
Q ss_pred HHHHHHHHHHHhcCCCCCCcccccc--hhHHHHHhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHHH-H
Q 003155 63 EQVLEAFASWLRLKHRIPGSVLASH--PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ-I 139 (843)
Q Consensus 63 ~~~L~cl~sWi~~~~~i~~~~l~~~--~ll~~~~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~~-~ 139 (843)
..+|+|+.+|+.| ++.+.+.+. .+++.++..+.+++++.+|++||+++++..+. +. .+.+++..+.+. +
T Consensus 225 ~~aL~~l~~~l~W---i~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~--~~---~~~~li~~l~~~~l 296 (1204)
T 3a6p_A 225 VAALNTLAGYIDW---VSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK--LE---DRKPLMVLFGDVAM 296 (1204)
T ss_dssp HHHHHHHHTTTTT---SCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSC--HH---HHGGGGGGGSHHHH
T ss_pred HHHHHHHHHHHhc---cCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCC--hh---hHHHHHHHHhhHHH
Confidence 8899999999986 776666543 49999999999999999999999999987653 11 223333222111 1
Q ss_pred HhhHHHHh--h----ccCCHHHHHHHHHHHHHHhhHHHHHHHc-----CCchHHHHHHHHHhhccCCCcchhhhhHHHHH
Q 003155 140 MSLKAHLT--D----SSKDEEDVKAIARLFADMGDSYVELIAT-----GSDESMLIVHALLEVASHPEYDIASMTFNFWH 208 (843)
Q Consensus 140 ~~l~~~l~--~----~~~d~~~~~~l~~l~~~~~e~~~~~l~~-----~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~ 208 (843)
-++..... . .++|.++++.+|++++++|+.+...+.. .++++..++++++.++.||+.+++..+++||+
T Consensus 297 ~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~ 376 (1204)
T 3a6p_A 297 HYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWG 376 (1204)
T ss_dssp HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHH
Confidence 11222211 1 1234578999999999999987776653 23467899999999999999999999999999
Q ss_pred HHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCCC----CC------h-hhhHHhHh
Q 003155 209 SLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLV---SFRVQYPQDYQD----LS------L-EDLKEFKH 274 (843)
Q Consensus 209 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l---~~k~~~p~d~~~----~~------~-e~~e~f~~ 274 (843)
.+.+..... ....+.+++.+|++++ +.||+||++.+. |. + |+.+.|.+
T Consensus 377 ~ll~~~~~~------------------~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~ 438 (1204)
T 3a6p_A 377 ALFRHEILS------------------RDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNS 438 (1204)
T ss_dssp HHHSCTTTT------------------TCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHhccccc------------------ccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHH
Confidence 887643100 0135789999999999 999999985331 21 1 22367999
Q ss_pred hhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCC--------------------CCCCCc
Q 003155 275 TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCG--------------------NKHNEW 334 (843)
Q Consensus 275 ~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~--------------------~~~~~W 334 (843)
||++ ++|++++++.+.+ +..+..+.+.+.+.+.+.. ..+..|
T Consensus 439 ~Rk~-----------------~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 500 (1204)
T 3a6p_A 439 SRAQ-----------------QGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSF 500 (1204)
T ss_dssp HHHH-----------------HHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHH
T ss_pred HHHH-----------------HHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHH
Confidence 9999 9999999999886 5677777776755543210 013468
Q ss_pred chhhHHHHHHHHhhccCCCc------cccchHHHhhhccCC-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 003155 335 RPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407 (843)
Q Consensus 335 ~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l 407 (843)
...||..++++++++++... .+..++++++.+.++ +.||.++.+.+.++|+|++|+..||+ +++++++++
T Consensus 501 ~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~---~L~~vL~~l 577 (1204)
T 3a6p_A 501 VQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPE---FLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGG---GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCch---HHHHHHHHH
Confidence 89999999999999887211 113567888887775 46999999999999999999999997 999999999
Q ss_pred HhccCC-------------CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCC-CChhhHHHHHHHHHH
Q 003155 408 TSGMST-------------SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSM 473 (843)
Q Consensus 408 ~~~l~~-------------~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~-l~~~~~~~l~eaig~ 473 (843)
+.++.+ .++++.+||.+|.+||++|+..|.||+++|.+.+..++..+ + ++..++..+++|++.
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~---~~l~~~e~~~L~eal~~ 654 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE---LLLTQMEKCALMEALVL 654 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST---TTSCHHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---ccccHHHHHHHHHHHHH
Confidence 987644 12599999999999999999999999999999999988642 4 778999999999999
Q ss_pred HHhcCCH-HHHHHHHHHhhhHHHHHHHH-----HHhcCC----------cc--ccccCc-----hhhHHHHHHHHHhhhc
Q 003155 474 VITELPQ-VDAKKALEMLCLPVVTPLQE-----IINQGP----------EI--LQKKHP-----RDLTVHIDRFAYIFRY 530 (843)
Q Consensus 474 vi~~~p~-~~~~~~l~~l~~p~~~~l~~-----~~~~~~----------~~--~~~~~~-----~~~~~~l~~l~~~~~~ 530 (843)
+...+|+ ++...+++.++.|++++|.+ .++... .. ....+. +.+...+..+....+.
T Consensus 655 ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r 734 (1204)
T 3a6p_A 655 ISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKR 734 (1204)
T ss_dssp HHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9655555 56677799999999999874 222111 00 000000 1111112222222221
Q ss_pred c--------------------C-C---cchHHHHHHHHHHHHHHHHHhhc--CCHHHHHHHH-------------HHHHH
Q 003155 531 V--------------------N-H---PEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLC-------------RACKY 571 (843)
Q Consensus 531 ~--------------------~-~---~~~~~~~~~~~~~~l~~il~~~~--~~~~i~e~~~-------------~~l~~ 571 (843)
+ . . .+|+.+.++.+||.+.+++..+. +++++.++++ ++...
T Consensus 735 ~~~~~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~ 814 (1204)
T 3a6p_A 735 TCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAIL 814 (1204)
T ss_dssp CCCCSSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHT
T ss_pred hcCCCChhhhhcCCceeccCCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhc
Confidence 1 0 0 26888999999999999998876 7888888887 66555
Q ss_pred HHHhh-hhhhh-hhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCC
Q 003155 572 AVRTS-KRFMG-ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 649 (843)
Q Consensus 572 ~i~~~-~~~~~-p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~p 649 (843)
++... ..+.. +..+...+.+-..+...+.+||+++.+.. ..+|+. ++. +.++-..+.+..+..+.... ..+.+
T Consensus 815 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~re~~y~~lg~~~-~~l~~~--fy~-~~~l~~~l~~~~f~~l~~~~-~~~l~ 889 (1204)
T 3a6p_A 815 GLPQPLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAG-PSMQQD--FYT-VEDLATQLLSSAFVNLNNIP-DYRLR 889 (1204)
T ss_dssp CCCCCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTT--TTT-STTHHHHHHHHTTSSTTTSC-HHHHH
T ss_pred CCCcccccccccCCCcCcHHHHHHHHHHHHHHHHHHHHHHh-hccccc--ccC-CcchHHHHHHHHHhcchhcc-HHHHH
Confidence 54331 11111 22235566777777778888988776543 334443 211 01111222222332222111 12345
Q ss_pred chHHHHHHHHHHHHhhCCCcccCc---CCcHHHHHHHHHhcc-----C--------------------------------
Q 003155 650 DVADDCFLLASRCIRYCPQLFIPS---SVFPSLVDCSMIGIT-----V-------------------------------- 689 (843)
Q Consensus 650 D~~~~~f~l~~~~~~~~p~~~~~s---~~l~~i~~~~~~~l~-----~-------------------------------- 689 (843)
++++.+| ..++++||..+..+ +.+..+|......+. +
T Consensus 890 ~li~~~~---~p~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lT 966 (1204)
T 3a6p_A 890 PMLRVFV---KPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLT 966 (1204)
T ss_dssp HHHHHTH---HHHHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHH
Confidence 5666665 67788999877664 556666655433332 1
Q ss_pred -----------------------------------------------------CChhHHHHHHHHHHHhhccccCC----
Q 003155 690 -----------------------------------------------------QHREASNSILTFLSDIFDLAKSC---- 712 (843)
Q Consensus 690 -----------------------------------------------------~e~~~~~s~~~fl~~li~~~~~~---- 712 (843)
.++.+..+++.|+...+.|..+.
T Consensus 967 r~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~ 1046 (1204)
T 3a6p_A 967 REVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQR 1046 (1204)
T ss_dssp HHHHHHHHHHHBC------------------------------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCccccccccccccccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 12223566777777777774221
Q ss_pred Cchh-hHHHHHHHHh-----hhhHHHHHHHHHHcc-cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCH
Q 003155 713 KGEE-FLSVRDSVII-----PRGASITRILIASLT-GALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAE 785 (843)
Q Consensus 713 ~~~~-~~~~~~~~~~-----~~g~~lv~~ll~~l~-~~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~~l~~~P~~~~t~ 785 (843)
+... ....++.++. +.|..++..++.|+. ...|.+...+++.++..++..++..+. |+++++..+|+ +++
T Consensus 1047 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~-~~~~vl~~lP~--i~~ 1123 (1204)
T 3a6p_A 1047 TTSQLCWPLLKQVLSGTLLADAVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYL-EIRAVMEQIPE--IQK 1123 (1204)
T ss_dssp HHHHTHHHHHTTSCSSCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCS-THHHHHTTSSS--CCH
T ss_pred HHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCc-cHHHHHHhCCC--CCH
Confidence 0000 0012222222 458889989999998 888888889999999999988887776 99999999998 999
Q ss_pred HHHHHHHHHHHHHhc-CCCchhhhHHHHHHHHHHhhh
Q 003155 786 VERSRFLQALSEAAS-GVDVNAAMAPVEELSDVCRRN 821 (843)
Q Consensus 786 ~~~~~f~~~l~~~~~-~~~~~~~~~~~~~F~~~~r~~ 821 (843)
++.++|.+++.+... .++.|+-|..+++|..-+||.
T Consensus 1124 ~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~ 1160 (1204)
T 3a6p_A 1124 DSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGK 1160 (1204)
T ss_dssp HHHHHHHHHSSCC------------------------
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCC
Confidence 999999999854322 245788899999999988884
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.95 E-value=2.3e-25 Score=273.69 Aligned_cols=653 Identities=13% Similarity=0.131 Sum_probs=433.1
Q ss_pred HhHHHHHHHHHHhhhch--hhHHHHHHHHHHHHhcCCC-CCCcccc--cchhHHHHHhhcCCC--cchHHHHHHHHHHHh
Q 003155 43 SQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHR-IPGSVLA--SHPLVLTALSSLHSE--ILSEASVNVISELIH 115 (843)
Q Consensus 43 ~~~~~Vl~~l~~~l~~~--~~~~~~L~cl~sWi~~~~~-i~~~~l~--~~~ll~~~~~~L~~~--~~~~~A~~~l~eii~ 115 (843)
+.||++++.|...++++ ..+..++.|+..-++-.+. +....+. ...+++.+++.+.++ ++|..|+.++..++.
T Consensus 124 ~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 36777888787777764 5788889888887663110 0000110 144677777777754 789999999987764
Q ss_pred hhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCC
Q 003155 116 YSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHP 195 (843)
Q Consensus 116 ~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~ 195 (843)
.... .....+..+++.+.. .+ .++|++..+..++.+..+++.+...+.. ++..+++.++.+..++
T Consensus 204 ~~~~-------~~~~~~~~~l~~l~~---~~--~d~~~~vr~~a~~~L~~l~~~~~~~~~~---~l~~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 204 SRTQ-------ALMLHIDSFIENLFA---LA--GDEEPEVRKNVCRALVMLLEVRMDRLLP---HMHNIVEYMLQRTQDQ 268 (852)
T ss_dssp TTCH-------HHHTSHHHHHHHHHH---HH--TCCCHHHHHHHHHHHHHHHHHCHHHHGG---GHHHHHHHHHHHHTCS
T ss_pred cccH-------HHHHHHHHHHHHHHH---Hc--CCCCHHHHHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHHccCC
Confidence 3211 111223333333322 11 2456777788999999999988877765 5678999999999999
Q ss_pred CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC---C--hhh--
Q 003155 196 EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL---S--LED-- 268 (843)
Q Consensus 196 ~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~---~--~e~-- 268 (843)
+++++..+++||..+++... .....+|++.+++++++++|.|+++...| + +|+
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~--------------------~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPI--------------------CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTT--------------------HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHHhcchh--------------------HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 99999999999999875321 11345778889999999999887531111 0 111
Q ss_pred hHHhHh--hhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHH
Q 003155 269 LKEFKH--TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 346 (843)
Q Consensus 269 ~e~f~~--~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~ 346 (843)
++.+.. .|+. .++++..++...| +.+++.+.+.+.+.+. +.+|+.++++++++++
T Consensus 329 dd~~~~~~vr~~-----------------a~~~L~~la~~~~-~~~~~~l~~~l~~~l~-----~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 329 DDTISDWNLRKC-----------------SAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVVKESGILVLGA 385 (852)
T ss_dssp ----CCCCHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHH
T ss_pred ccccccchHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence 111111 1333 7778888888888 5788888888888763 5689999999999999
Q ss_pred hhccCCCccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHH
Q 003155 347 ISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAAL 423 (843)
Q Consensus 347 iae~~~~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~ 423 (843)
+++++.....++++.+++.+.. + .+++.||.++++++|+|++|+...+. ..++..+++.++..+.++ .+++..|+.
T Consensus 386 i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 386 IAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp TTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999875545677777776643 2 24899999999999999999976432 138999999999988643 359999999
Q ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH-HHHHHHHHhhhHHHHHHHHHH
Q 003155 424 AFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEII 502 (843)
Q Consensus 424 a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~-~~~~~l~~l~~p~~~~l~~~~ 502 (843)
|+.++|+.|...+.||++.++..+...+.. ...+....++++++.++..+++. ....++..++.++++.+..+.
T Consensus 465 aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-----~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~ 539 (852)
T 4fdd_A 465 AFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK 539 (852)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhHhhHhHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999888853 34566677899999999776542 235678888888777765533
Q ss_pred hcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhh--------------c-CCHHHHHHHHH
Q 003155 503 NQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR--------------A-WDMRTMESLCR 567 (843)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~--------------~-~~~~i~e~~~~ 567 (843)
+.. +++...+++++.+++.++. .+.++...+++.+..++... . .+.++...++.
T Consensus 540 d~~---------~~~~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~ 608 (852)
T 4fdd_A 540 DED---------KDLFPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608 (852)
T ss_dssp TTC---------TTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHH
T ss_pred ccc---------HHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHH
Confidence 211 1122347888888777653 34555555555443333321 1 14557778889
Q ss_pred HHHHHHHhhhhhhhhhH--HHHHHHHHHHHhhcC---CchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhccc
Q 003155 568 ACKYAVRTSKRFMGITI--GAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI 642 (843)
Q Consensus 568 ~l~~~i~~~~~~~~p~l--~~l~~~l~~~~~~~~---~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~ 642 (843)
.+..+++.+|.++.|++ +.+++.+...++... ..++..+++.++..+|.. +.+.+..++..+ ...+.
T Consensus 609 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~l~~~lp~l----~~~l~-- 680 (852)
T 4fdd_A 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH--VKPCIADFMPIL----GTNLN-- 680 (852)
T ss_dssp HHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--TGGGHHHHHHHH----HHTCC--
T ss_pred HHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHH----HHHcC--
Confidence 99999999999998887 678887777664321 124567777777777753 555555444332 23332
Q ss_pred ccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhccccCCCchhhHHH
Q 003155 643 EEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQ--HREASNSILTFLSDIFDLAKSCKGEEFLSV 720 (843)
Q Consensus 643 ~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~--e~~~~~s~~~fl~~li~~~~~~~~~~~~~~ 720 (843)
.++++++..-...+..+.++.+..+ .++...++...+.-++.+ .+.....++.-+..+... .+
T Consensus 681 ---~~~~~v~~~a~~alg~i~~~~~~~~--~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~-----~~----- 745 (852)
T 4fdd_A 681 ---PEFISVCNNATWAIGEISIQMGIEM--QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-----CP----- 745 (852)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHHGGGG--GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH-----CH-----
T ss_pred ---ccchHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh-----CH-----
Confidence 2457787877777777776654433 234566666655555543 234556666666666642 11
Q ss_pred HHHHHhhhhHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHH---HHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 003155 721 RDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLE---WAKESVSLIPLTALAEVERSRFLQALSE 797 (843)
Q Consensus 721 ~~~~~~~~g~~lv~~ll~~l~~~~p~s~~~~~a~iL~~l~~~~~~~~~~---wl~~~l~~~P~~~~t~~~~~~f~~~l~~ 797 (843)
+.+..|...++..++..+-..-....-+..-.-|-.+...+|..... ++-+++..... .+++.++.|.+-+..
T Consensus 746 --~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~ 821 (852)
T 4fdd_A 746 --QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN--PKDDLRDMFCKILHG 821 (852)
T ss_dssp --HHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSS--CCHHHHHHHHHHHHH
T ss_pred --HHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 23335556666666666643222233445666777778888874322 22345554444 478888888888753
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.94 E-value=6.3e-23 Score=252.44 Aligned_cols=578 Identities=11% Similarity=0.124 Sum_probs=392.0
Q ss_pred HhHHHHHHHHHHhhhch---hhHHHHHHHHHHHHhcCCCCCCcc--c--ccchhHHHHHhhcCCC----cchHHHHHHHH
Q 003155 43 SQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSV--L--ASHPLVLTALSSLHSE----ILSEASVNVIS 111 (843)
Q Consensus 43 ~~~~~Vl~~l~~~l~~~---~~~~~~L~cl~sWi~~~~~i~~~~--l--~~~~ll~~~~~~L~~~----~~~~~A~~~l~ 111 (843)
+.|+.++..|...++++ ..+..++.++....+- +..+. + ....+++.+.+.+.++ ++|.+|++|+.
T Consensus 130 ~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~---~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~ 206 (861)
T 2bpt_A 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES---ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALA 206 (861)
T ss_dssp TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT---SSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc---CChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 37889999888888754 5888899999988873 22221 1 1245777777777754 57999999999
Q ss_pred HHHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHH-HHHHHHHh
Q 003155 112 ELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESM-LIVHALLE 190 (843)
Q Consensus 112 eii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~ 190 (843)
.++........ ... ....+++.+ ...+ .+++.+..+..++.+..+++.+...+.. ++. .++++++.
T Consensus 207 ~~~~~~~~~~~----~~~-~~~~ll~~l---~~~~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~l~~~l~~~~~~ 273 (861)
T 2bpt_A 207 DSLIFIKNNME----REG-ERNYLMQVV---CEAT--QAEDIEVQAAAFGCLCKIMSKYYTFMKP---YMEQALYALTIA 273 (861)
T ss_dssp HHGGGCHHHHT----SHH-HHHHHHHHH---HHHH--TCSCHHHHHHHHHHHHHHHHHHGGGCHH---HHHHTHHHHHHH
T ss_pred HHHHHHHHHcc----Chh-HHHHHHHHH---HHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 98754321000 100 011122211 1111 2456666677888888888877644432 345 78888888
Q ss_pred hccCCCcchhhhhHHHHHHHHHHhcccccccc-cCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhh
Q 003155 191 VASHPEYDIASMTFNFWHSLQVILTKRDSYIS-FGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDL 269 (843)
Q Consensus 191 ~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~ 269 (843)
....++++++..+++||..+.+.......... .+..|. ......++++..+++.++.+++.+++ ++ ++
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~il~~ll~~l~~~~~-d~----~d 342 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL------QSYNFALSSIKDVVPNLLNLLTRQNE-DP----ED 342 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC------CCCCHHHHHHHHHHHHHHHHTTCCCC-C-----CC
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch------hhHHHHHHHHHHHHHHHHHHHHhccc-cc----cc
Confidence 88888999999999999999876421000000 000000 00123466788899999999987653 11 11
Q ss_pred HHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhc
Q 003155 270 KEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 349 (843)
Q Consensus 270 e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae 349 (843)
+++ ..|.. +.+++..++..+| +.+++.+.+.+.+.+. +.+|+.+|+++++++++++
T Consensus 343 ~~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 343 DDW-NVSMS-----------------AGACLQLFAQNCG-NHILEPVLEFVEQNIT-----ADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp CCC-HHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHTSS
T ss_pred ccC-cHHHH-----------------HHHHHHHHHHHcc-HhHHHHHHHHHHHHcC-----CCChhHHHHHHHHHHHHHc
Confidence 222 34555 7788888888888 5678888888877663 5679999999999999999
Q ss_pred cCC-CccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 003155 350 YVS-VVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFR 426 (843)
Q Consensus 350 ~~~-~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~ 426 (843)
++. ..-.++++++++.+.+ + .+++.||.++++++|+|++|+..+.....+++.+++.++.+++++.+++..|++++.
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~ 478 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 876 2234556666665532 2 248999999999999999999764111148999999999999776569999999999
Q ss_pred HHHHHhh----hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHH
Q 003155 427 HICDDCR----KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEII 502 (843)
Q Consensus 427 ~lc~~c~----~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~ 502 (843)
.+|+.|. ..+.||++.++..+...+... ..+...|..+++++|.++...+. +..+++..++.++++.+.+.+
T Consensus 479 ~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~---d~~~~vr~~a~~al~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DNEFNARASAFSALTTMVEYATD-TVAETSASISTFVMDKLGQTM 554 (861)
T ss_dssp HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CCGGGHHHHHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHhCc---CcchHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHHHHHHHHHHH
Confidence 9999986 668899999999998888532 12246788899999999999875 467788889999998888764
Q ss_pred hcCCc--c-ccccCchh-hHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh
Q 003155 503 NQGPE--I-LQKKHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR 578 (843)
Q Consensus 503 ~~~~~--~-~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~ 578 (843)
..... . .+.....+ ....++.++.+++.++. .+.++...+++.+..++.....+ .+.+.++.++..+....|.
T Consensus 555 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGK 631 (861)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGG
T ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhh
Confidence 32100 0 00000111 12346788888877653 34456778888888877653221 6788999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhcCC---chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHH
Q 003155 579 FMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDC 655 (843)
Q Consensus 579 ~~~p~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~ 655 (843)
.+.|+++.+++.+...++.... ...+.+++.++...|.. +.+.+..++..+ +..+. +...+++++...
T Consensus 632 ~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~l~~~l----~~~l~---~~~~~~~vr~~~ 702 (861)
T 2bpt_A 632 GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMMNVL----AQMIS---NPNARRELKPAV 702 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--GHHHHHHHHHHH----HHHHH---CTTCCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh--ccchHHHHHHHH----HHHhC---CccccHhhhHHH
Confidence 9999999999988888853221 24567777788777753 555555554443 33443 122468999999
Q ss_pred HHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccC
Q 003155 656 FLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 689 (843)
Q Consensus 656 f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~ 689 (843)
+..+..+.++.+..|.+ +++.++.....++..
T Consensus 703 ~~~l~~l~~~~~~~~~~--~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 703 LSVFGDIASNIGADFIP--YLNDIMALCVAAQNT 734 (861)
T ss_dssp HHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhc
Confidence 99999999987766543 455566655555543
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.92 E-value=2.7e-21 Score=238.27 Aligned_cols=583 Identities=14% Similarity=0.131 Sum_probs=385.9
Q ss_pred HhHHHHHHHHHHhhhch----hhHHHHHHHHHHHHhcCCCCCCcccc--cchhHHHHHhhcCCC----cchHHHHHHHHH
Q 003155 43 SQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLA--SHPLVLTALSSLHSE----ILSEASVNVISE 112 (843)
Q Consensus 43 ~~~~~Vl~~l~~~l~~~----~~~~~~L~cl~sWi~~~~~i~~~~l~--~~~ll~~~~~~L~~~----~~~~~A~~~l~e 112 (843)
..|+.+++.+...+.++ .++..+++++...+.. +..+.+. ...+++.+.+.+.++ ++|..|++|+..
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~---~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~ 200 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD---IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---SCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---cCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 67899999998888654 4788899999998874 2222221 245677777778754 578999999999
Q ss_pred HHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHH-HHHHHHHhh
Q 003155 113 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESM-LIVHALLEV 191 (843)
Q Consensus 113 ii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~ 191 (843)
++...... .... .....+++.+ .. .. .++|++.....++.+..+++.+.+.+.. ++. .++++++.+
T Consensus 201 ~~~~~~~~----~~~~-~~~~~il~~l---~~-~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 201 SLEFTKAN----FDKE-SERHFIMQVV---CE-AT-QCPDTRVRVAALQNLVKIMSLYYQYMET---YMGPALFAITIEA 267 (876)
T ss_dssp HGGGCHHH----HTSH-HHHHHHHHHH---HH-HT-TCSSHHHHHHHHHHHHHHHHHSGGGCHH---HHTTTHHHHHHHH
T ss_pred HHHHHHHH----HHhH-HHHHHHHHHH---HH-Hc-CCCCHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence 88642210 0011 0001122222 11 11 2445566667788888888776544432 344 688888888
Q ss_pred ccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHH---HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhh
Q 003155 192 ASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAER---SRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLED 268 (843)
Q Consensus 192 ~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~---~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~ 268 (843)
...++++++..+++||..+.+...... .+++...++.. .......++++.++++.+++.+...++ + ++
T Consensus 268 ~~~~~~~v~~~al~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~-d----~~ 338 (876)
T 1qgr_A 268 MKSDIDEVALQGIEFWSNVCDEEMDLA----IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE-N----DD 338 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS-S----CC
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHh----hhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc-c----cc
Confidence 888899999999999999987542100 00000000000 001123455677888888888865432 1 11
Q ss_pred hHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhh
Q 003155 269 LKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348 (843)
Q Consensus 269 ~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~ia 348 (843)
.+++ ..|.. +.+++..++..+| +.+++.+.+.+.+.+. +.+|+.+++++++++.++
T Consensus 339 ~~~~-~~r~~-----------------a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~-----~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 339 DDDW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-----NPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp TTCC-CHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHTS
T ss_pred cccc-HHHHH-----------------HHHHHHHHHHHCc-HhhHHHHHHHHHHHcc-----CCChHHHHHHHHHHHHHH
Confidence 1222 34555 7788888888777 5677878877777652 578999999999999999
Q ss_pred ccCCCc-cccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHH
Q 003155 349 TYVSVV-EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAF 425 (843)
Q Consensus 349 e~~~~~-~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~ 425 (843)
+++.++ -.++++++++.+.. + .+++.||.++++++|++++++........+++.+++.++..+.++.+++..|++++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al 474 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 988632 23456666665432 2 24799999999999999999876210113899999999999987766999999999
Q ss_pred HHHHHHhh--------------hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003155 426 RHICDDCR--------------KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 491 (843)
Q Consensus 426 ~~lc~~c~--------------~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~ 491 (843)
..+++.+. ..+.||++.++..+.+.+...+. -....+..++++++.++...+. +..+++..++
T Consensus 475 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~~l~ 551 (876)
T 1qgr_A 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSAYESLMEIVKNSAK-DCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTTHHHHHHHHHHHHHHTCCS-TTHHHHHHHH
T ss_pred HHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--chhhHHHHHHHHHHHHHHHCch-hhHHHHHHHH
Confidence 99999987 34889999999999988754211 0234567799999999999875 4667889999
Q ss_pred hHHHHHHHHHHhcCCccccccCc---hhh-HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 003155 492 LPVVTPLQEIINQGPEILQKKHP---RDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 567 (843)
Q Consensus 492 ~p~~~~l~~~~~~~~~~~~~~~~---~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~ 567 (843)
.+++..+...+............ .++ ...+.+++.+.+.++. +.+.+++..++|.+..++....+...+.+.++.
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 99999988875321110000000 111 2235677777776541 334556777788777776543212367889999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCC----chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccc
Q 003155 568 ACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE 643 (843)
Q Consensus 568 ~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~----~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~ 643 (843)
++..++...+..+.|+++.+++.+...+..... ...+++++.++...|.. +.+.+..++.. .+..++.
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~i~~~----l~~~l~~-- 702 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIPFCDEVMQL----LLENLGN-- 702 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHH----HHHHHTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHH----HHHHhCC--
Confidence 999999888988999999988888877765422 24567788888887753 55554444444 3444542
Q ss_pred cCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccC
Q 003155 644 EFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 689 (843)
Q Consensus 644 ~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~ 689 (843)
.+.+++++...+..+..+.+..+..|.+ +++.++.....++..
T Consensus 703 -~~~~~~~~~~~~~~l~~i~~~~g~~~~~--~l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 703 -ENVHRSVKPQILSVFGDIALAIGGEFKK--YLEVVLNTLQQASQA 745 (876)
T ss_dssp -TTSCGGGHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHTC
T ss_pred -ccccHHhhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHhc
Confidence 2245789999999999999877665543 567777766666554
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.91 E-value=6.7e-22 Score=245.46 Aligned_cols=489 Identities=13% Similarity=0.133 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhcc-----CCCcchhhhhHHHHHHHHHHhcccccccccCcccchH
Q 003155 156 VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVAS-----HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAE 230 (843)
Q Consensus 156 ~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~-----~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~ 230 (843)
.+.+++.++.+.+.|...+.. ++..+++.++.... ..++.+...+++||..+++.-
T Consensus 263 k~~~~~~l~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~---------------- 323 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP---------------- 323 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH----------------
Confidence 457888899988888776643 45566666666543 235789999999999876421
Q ss_pred HHHHHHHHHHH--HHHHHHH-HHHHhhccCCC-CCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhh
Q 003155 231 AERSRRLQVFR--SAYESLV-SLVSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASV 306 (843)
Q Consensus 231 ~~~~~~~~~~~--~~~~~L~-~~l~~k~~~p~-d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~v 306 (843)
.....++ +++.+++ .+++..|.|++ |.+.|++|. ++| .|++.. ++..|+.++. +++++..++..
T Consensus 324 ----~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp-~e~--i~~d~e--~~d~~s~R~a---a~~~L~~l~~~ 391 (960)
T 1wa5_C 324 ----KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP-IEY--IRRDLE--GSDTDTRRRA---CTDFLKELKEK 391 (960)
T ss_dssp ----HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH-HHH--HHHHHH--C----CHHHH---HHHHHHHHHHH
T ss_pred ----hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH-HHH--HHhccC--cccccCcHHH---HHHHHHHHHHH
Confidence 1123344 8999999 79999999976 455675442 222 122210 1112233322 88899999988
Q ss_pred cChhHHHHHHHHHHHHHHhhC-CCCCCCcchhhHHHHHHHHhhccCC---Ccccc-----chHH-----HhhhccCC-CC
Q 003155 307 LGGDATLKILYIKFVEGVACC-GNKHNEWRPAEAALFCIRAISTYVS---VVEAE-----VMPQ-----VMALLPKL-PQ 371 (843)
Q Consensus 307 l~~~~~l~~l~~~l~~~l~~~-~~~~~~W~~~Ea~L~~l~~iae~~~---~~~~~-----~l~~-----l~~~l~~l-p~ 371 (843)
.| +.+++.+.+.+.+.+.+. .+++.+|+..||+++++++++++.. ..... .+.. +++.+..- |.
T Consensus 392 ~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~ 470 (960)
T 1wa5_C 392 NE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIP 470 (960)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCS
T ss_pred cc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCC
Confidence 88 678888888887766421 1225689999999999999987532 11111 1222 23333221 24
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHH-----------hhhhhcCC
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDD-----------CRKKLCGY 439 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~-----------c~~~l~~~ 439 (843)
||.||.++||++|+|++|+ +|+ ++.++++.++++|.++ ..|+.+||+||.+||+. ++..+.||
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~---~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~ 545 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKA---QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS 545 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred CceehHHHHHHHHHHHhhC--CHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh
Confidence 9999999999999999998 443 8999999999999765 34899999999999973 35779999
Q ss_pred HHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHH
Q 003155 440 LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTV 519 (843)
Q Consensus 440 ~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 519 (843)
++.+++.+..+++..+.......+...++++++.++...+ ++..+++..++..++..+....+... ...-...
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~L~~~l~~~~~~~~------~~~~~~~ 618 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQFIEIVTIMAKNPS------NPRFTHY 618 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhCCC------CcHHHHH
Confidence 9999999999886411000011245689999999999875 44556777777777777776543221 1111234
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH--HHHhh
Q 003155 520 HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ--GLYQQ 597 (843)
Q Consensus 520 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~--~~~~~ 597 (843)
.+++|+.+++. ..+++...+.+.+||++..+++... .+..+.++..+..+++.. ..+.++++.+++.+. ..++.
T Consensus 619 ~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~ 694 (960)
T 1wa5_C 619 TFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWEL 694 (960)
T ss_dssp HHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCC
T ss_pred HHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcC
Confidence 58999999987 4457788899999999999998654 234555666666555443 334445555555555 44443
Q ss_pred cC-CchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCc
Q 003155 598 HQ-QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVF 676 (843)
Q Consensus 598 ~~-~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l 676 (843)
.. .+....++...+...++. +.+ +..+++....++.. ..+| ...|.++..++.++|...+ .+++
T Consensus 695 ~~~~~~~~~~L~~~~~~~~~~--~~~-----~~~~l~~~~~~~~~-----~~~~--~~a~~ll~~i~~~~~~~~~-~~yl 759 (960)
T 1wa5_C 695 KGNIPAVTRLLKSFIKTDSSI--FPD-----LVPVLGIFQRLIAS-----KAYE--VHGFDLLEHIMLLIDMNRL-RPYI 759 (960)
T ss_dssp TTTHHHHHHHHHHHHHHHGGG--CSC-----SHHHHHHHHHHHTC-----TTTH--HHHHHHHHHHHHHSCHHHH-GGGH
T ss_pred CCCchhHHHHHHHHHHhChHH--HHH-----HHHHHHHHHHHhCC-----Cccc--chHHHHHHHHHHHCCHHHH-HHHH
Confidence 21 112222333333332211 111 11111111112221 1244 8889999999999987621 3478
Q ss_pred HHHHHHHHHhccCCChhHH-HHHHHHHHHhhc
Q 003155 677 PSLVDCSMIGITVQHREAS-NSILTFLSDIFD 707 (843)
Q Consensus 677 ~~i~~~~~~~l~~~e~~~~-~s~~~fl~~li~ 707 (843)
+.++...+..++....+.. ++.+.|+..+..
T Consensus 760 ~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~ 791 (960)
T 1wa5_C 760 KQIAVLLLQRLQNSKTERYVKKLTVFFGLISN 791 (960)
T ss_dssp HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHH
Confidence 9999998888877654444 377777776663
No 12
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.83 E-value=1e-18 Score=180.83 Aligned_cols=227 Identities=16% Similarity=0.242 Sum_probs=201.2
Q ss_pred hhhHHHHHHHHHHHHhh----cCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHH
Q 003155 581 GITIGAILEEIQGLYQQ----HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCF 656 (843)
Q Consensus 581 ~p~l~~l~~~l~~~~~~----~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f 656 (843)
..++|++++.++.+|++ .+.|.+|++.++++.+.|+. +.+.+..+++.++.+|++|++ +++.++||++..||
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~TL~MI~--~df~eyPehR~~Ff 143 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFF 143 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHHHS--STTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHh--cccccChHHHHHHH
Confidence 45689999999999986 45689999999999999976 889999999999999999998 68999999999999
Q ss_pred HHHHHHHhhCCCccc--CcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhhHHHHH
Q 003155 657 LLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITR 734 (843)
Q Consensus 657 ~l~~~~~~~~p~~~~--~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 734 (843)
.|+..+..+|+..++ +++.+..++++.+||+++++|+....+++.+.+++..... .+ +..+++++++...++.
T Consensus 144 ~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~--~~---~~~~~Fy~~fy~~il~ 218 (321)
T 1w9c_A 144 LLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ--EE---AAAQSFYQTYFCDILQ 218 (321)
T ss_dssp HHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--CH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc--Ch---HHHHHHHHHHHHHHHH
Confidence 999999999998875 4567999999999999999999999999999999975421 22 3478899999999999
Q ss_pred HHHHHcccCCCCCCcccHHHHHHHHHHHh-----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHH
Q 003155 735 ILIASLTGALPSSRLETVTYALLALTRAY-----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALS 796 (843)
Q Consensus 735 ~ll~~l~~~~p~s~~~~~a~iL~~l~~~~-----------------~~~~~~wl~~~l-~~~P~~~~t~~~~~~f~~~l~ 796 (843)
.+|..+++..|.+++...+.+|..|...- ....++|+.+.| +.||+ ++++|.+.|++.++
T Consensus 219 ~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~--l~~~qi~~fv~glf 296 (321)
T 1w9c_A 219 HIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPH--LQDAQVKLFVTGLF 296 (321)
T ss_dssp HHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 99999999999999999999999997432 125678888877 58997 99999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHhh
Q 003155 797 EAASGVDVNAAMAPVEELSDVCRR 820 (843)
Q Consensus 797 ~~~~~~~~~~~~~~~~~F~~~~r~ 820 (843)
.. .+++.+||..+|||.+..|.
T Consensus 297 ~~--~~d~~~Fk~~lrDFLIqiKE 318 (321)
T 1w9c_A 297 SL--NQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp HT--TTCHHHHHHHHHHHHHHHHT
T ss_pred Hc--cCCHHHHHHHHHHHHHHHHH
Confidence 86 57899999999999999886
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.77 E-value=4.1e-15 Score=182.47 Aligned_cols=623 Identities=13% Similarity=0.101 Sum_probs=376.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCCC--cchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHH
Q 003155 60 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP 137 (843)
Q Consensus 60 ~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~~--~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~ 137 (843)
.++..+-.|++.-.... +.+ ...++++.+++.+.++ ..++.|+.++..++.........+ .....+..++|
T Consensus 105 ~vr~~~a~~i~~ia~~~---~~~--~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~--~~~~~~~~il~ 177 (852)
T 4fdd_A 105 LIRATVGILITTIASKG---ELQ--NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD--VLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHHHT---TTT--TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC--SSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---Ccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh--hhcchHHHHHH
Confidence 47777777777766542 112 2356888888877754 567888888888876543210000 00012334444
Q ss_pred HHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhccc
Q 003155 138 QIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 217 (843)
Q Consensus 138 ~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~ 217 (843)
.+.+. + .+.+.+....-++.+..+.......+.. ....+++.++.....++.++...+++-+..+.+...
T Consensus 178 ~l~~~---l--~~~~~~vR~~A~~aL~~~~~~~~~~~~~---~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-- 247 (852)
T 4fdd_A 178 KFLQF---F--KHSSPKIRSHAVACVNQFIISRTQALML---HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-- 247 (852)
T ss_dssp HHTTT---T--TCSSHHHHHHHHHHHHTTTTTTCHHHHT---SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHH---h--cCCCHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--
Confidence 44331 1 1334444334444444433221111111 244678888888888888999988888777765321
Q ss_pred ccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhh
Q 003155 218 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA 297 (843)
Q Consensus 218 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~ 297 (843)
..+.+++..+++.+++-+.-++ + ..|.. +.
T Consensus 248 --------------------~~~~~~l~~l~~~l~~~~~~~~-------~------~vr~~-----------------a~ 277 (852)
T 4fdd_A 248 --------------------DRLLPHMHNIVEYMLQRTQDQD-------E------NVALE-----------------AC 277 (852)
T ss_dssp --------------------HHHGGGHHHHHHHHHHHHTCSS-------H------HHHHH-----------------HH
T ss_pred --------------------HHHHHHHHHHHHHHHHHccCCc-------H------HHHHH-----------------HH
Confidence 1234555666766666543211 1 11222 22
Q ss_pred HHHHHHhh------hcChhHHHHHHHHHHHHHH----------hhC--CC-CC----CCcchhhHHHHHHHHhhccCCCc
Q 003155 298 DVLIDAAS------VLGGDATLKILYIKFVEGV----------ACC--GN-KH----NEWRPAEAALFCIRAISTYVSVV 354 (843)
Q Consensus 298 d~l~~~~~------vl~~~~~l~~l~~~l~~~l----------~~~--~~-~~----~~W~~~Ea~L~~l~~iae~~~~~ 354 (843)
+.+..++. .+.+ .+..+.+.+.+.+ .+. .. .. .+|.-+.++.-+++.+++...
T Consensus 278 e~l~~l~~~~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-- 353 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-- 353 (852)
T ss_dssp HHHHHHTTSTTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHhcchhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--
Confidence 22222221 1111 2222222222221 000 00 01 679999999999999998774
Q ss_pred cccchHHHhhhccCC--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHH
Q 003155 355 EAEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDD 431 (843)
Q Consensus 355 ~~~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~ 431 (843)
+..++.+++.+... ..++.+|.++++++|+.++.....-. .+++.+++.+++.+.++ .+|+..|++++.++|+.
T Consensus 354 -~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 354 -DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp -GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred -HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34566666665332 23799999999999999886654211 27899999999999775 35999999999999998
Q ss_pred hhhh-hcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCcccc
Q 003155 432 CRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ 510 (843)
Q Consensus 432 c~~~-l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~ 510 (843)
+... ..+|+..++..+...+.. -....|.....+++.++...+.+ ..+++ .+++..+.++++...
T Consensus 431 ~~~~~~~~~~~~ll~~L~~~L~d-----~~~~vr~~a~~aL~~l~~~~~~~-l~~~l----~~ll~~L~~~l~~~~---- 496 (852)
T 4fdd_A 431 VVSQPPDTYLKPLMTELLKRILD-----SNKRVQEAACSAFATLEEEACTE-LVPYL----AYILDTLVFAFSKYQ---- 496 (852)
T ss_dssp HHHSCTTTTHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHGGG-GGGGH----HHHHHHHHHHHHHCC----
T ss_pred hccchHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhhHh-hHhHH----HHHHHHHHHHHHHhC----
Confidence 7653 568899999888887742 14678888999999998765432 33344 444555555554321
Q ss_pred ccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 003155 511 KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSKRFMGITIGAILE 589 (843)
Q Consensus 511 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~-~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~ 589 (843)
.+.....++.++.++...+..-....+++.++|.+......... +.++ ..+++++..+...+|..+.|++++++.
T Consensus 497 ---~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 497 ---HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp ---HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 12233446778888766543211234788999988877665543 3334 478999999999999988898888777
Q ss_pred HHHHHHhhc----------C----------CchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCC
Q 003155 590 EIQGLYQQH----------Q----------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 649 (843)
Q Consensus 590 ~l~~~~~~~----------~----------~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~p 649 (843)
.++..++.. + ..+.+++++.++..+|.+ +.+.+.. ..++...+..++ +..+
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~--~~~~~~~--~~~~~~l~~~l~-----~~~~ 643 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--IEQLVAR--SNILTLMYQCMQ-----DKMP 643 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--GHHHHHT--CCHHHHHHHHTT-----CSSH
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--HHHHhcC--CcHHHHHHHHhC-----CCCh
Confidence 554443321 1 134568888899988854 4444310 122233333343 2458
Q ss_pred chHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhhhh
Q 003155 650 DVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRG 729 (843)
Q Consensus 650 D~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g 729 (843)
+++++.|.++..+.+.++..+.+ +++.++......+...+....+.++..+..+...... + +..+-
T Consensus 644 ~vr~~a~~~l~~l~~~~~~~~~~--~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~-----------~~p~~ 709 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKACFQHVKP--CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-E-----------MQPYI 709 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-G-----------GGGGT
T ss_pred hHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-h-----------HHHHH
Confidence 99999999999999998876544 5777888888888777777778888888777653211 1 12333
Q ss_pred HHHHHHHHHHccc-CCCCCCcccHHHHHHHHHHHhhHHHHHHHHH----HHhhCCCCCCCHHHHHHHHHHHHHH
Q 003155 730 ASITRILIASLTG-ALPSSRLETVTYALLALTRAYGVRSLEWAKE----SVSLIPLTALAEVERSRFLQALSEA 798 (843)
Q Consensus 730 ~~lv~~ll~~l~~-~~p~s~~~~~a~iL~~l~~~~~~~~~~wl~~----~l~~~P~~~~t~~~~~~f~~~l~~~ 798 (843)
..++..++..+.. ..+++..+..+..+..|...+|+.+..++.+ .+..+|.. -+.++|+.-.+.+...
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~-~d~~e~~~a~~~l~~l 782 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNI-RDNEEKDSAFRGICTM 782 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTS-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccc-cccHHHHHHHHHHHHH
Confidence 3444445444432 3466778889999999999988754333333 22345542 2344566555554433
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.53 E-value=7.8e-12 Score=159.43 Aligned_cols=558 Identities=11% Similarity=0.097 Sum_probs=339.7
Q ss_pred hHHHHHHHHHHhhhc-h--hhHHHHHHHHHHHHhcCC-CCCCcccccchhHHHHHhhcCCC--cchHHHHHHHHHHHhhh
Q 003155 44 QMEVALSTLTACLHI-N--ELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYS 117 (843)
Q Consensus 44 ~~~~Vl~~l~~~l~~-~--~~~~~~L~cl~sWi~~~~-~i~~~~l~~~~ll~~~~~~L~~~--~~~~~A~~~l~eii~~~ 117 (843)
.++.++..|...+.+ + ..+..++.++..-+...+ .+.+ + ...+++.++..|.++ .+|..|+.++..++...
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-F--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-T--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-H--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 588899988888873 3 588888999988776321 1211 1 256778888888865 68999999999988654
Q ss_pred ccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCCc
Q 003155 118 AAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEY 197 (843)
Q Consensus 118 ~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~ 197 (843)
... ....++..+++ .+.... +.+.....+..+..++......+. +++..+++.++.....+++
T Consensus 207 ~~~------~~~~~l~~l~~-------~L~~~~-~~~~r~~a~~~l~~l~~~~~~~~~---~~l~~l~~~ll~~l~d~~~ 269 (1230)
T 1u6g_C 207 GNI------VFVDLIEHLLS-------ELSKND-SMSTTRTYIQCIAAISRQAGHRIG---EYLEKIIPLVVKFCNVDDD 269 (1230)
T ss_dssp ----------CTTHHHHHHH-------HHHHTC-SSCSCTTHHHHHHHHHHHSSGGGT---TSCTTHHHHHHHHHSSCCT
T ss_pred CHH------HHHHHHHHHHH-------HhccCC-chhHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhcCCCH
Confidence 320 11112222222 222111 112222345555555544322222 2455788999998888888
Q ss_pred chhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhh--HHhHhh
Q 003155 198 DIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDL--KEFKHT 275 (843)
Q Consensus 198 ~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~--e~f~~~ 275 (843)
+++..++..|..+..... +.+.|++..+++.+++.+.+++++. .++|+. +++.+
T Consensus 270 ~vR~~a~~~l~~l~~~~~----------------------~~~~~~l~~li~~ll~~l~~d~~~~-~~~d~~~~~~~~~- 325 (1230)
T 1u6g_C 270 ELREYCIQAFESFVRRCP----------------------KEVYPHVSTIINICLKYLTYDPNYN-YDDEDEDENAMDA- 325 (1230)
T ss_dssp TTHHHHHHHHHHHHHCTT----------------------CCCHHHHHHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHCh----------------------HHHHHhHHHHHHHHHHHhCCCCCCC-Ccccccccccccc-
Confidence 999999888888876331 1246788999999999998866531 111100 00100
Q ss_pred hccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc
Q 003155 276 RYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE 355 (843)
Q Consensus 276 R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~ 355 (843)
.+ +.+...+ ..+.+.. ..+..|.-+++++-+++.++......-
T Consensus 326 --------------------~~----------~~~~~~~-~~~~~~~------~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 326 --------------------DG----------GDDDDQG-SDDEYSD------DDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp --------------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred --------------------cc----------cccchhh-ccccccc------ccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 00 0000000 0000000 115679989999999999998544322
Q ss_pred ccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhHHHHhhC---------------C-C-CchhHHHHHHHHHhccCCC-H
Q 003155 356 AEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAA---------------S-S-DPSILASVLSILTSGMSTS-E 415 (843)
Q Consensus 356 ~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~---------------p-~-~~~~l~~vl~~l~~~l~~~-~ 415 (843)
.++++.+++.+.. +. .++.||..++.+++....-+... + . -..+++.+++.+.+.+.++ .
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 4455555555433 32 36889998888887665533210 0 0 0135677777777778654 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHH
Q 003155 416 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 495 (843)
Q Consensus 416 ~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~ 495 (843)
+++..++.++..++..|+..+.+|++.++..+...+... .-....+......++.++...+++...+++..++..++
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~---~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~ 525 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK---SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV 525 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS---SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC---CCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHH
Confidence 478889999999999998888899999999999988631 11246677788888888887776666667766666655
Q ss_pred HHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC-----cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 003155 496 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACK 570 (843)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~ 570 (843)
..+ ... ..+.....+..++.+++.++. +..+.++++.++|.+...+.....+..+.+.+..+++
T Consensus 526 ~~l----~d~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg 594 (1230)
T 1u6g_C 526 ACV----GDP-------FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMG 594 (1230)
T ss_dssp HHH----TCS-------SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHH
T ss_pred HHH----ccc-------chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 432 211 111123346777777766543 2356678899999988877655567789999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCC-chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCC
Q 003155 571 YAVRTSKRFMGITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 649 (843)
Q Consensus 571 ~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~-~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~p 649 (843)
.++...|..+.+++|.+++.+...+..... ...+..++.+...-+.. ...+.+..++..+ ...+. ++++
T Consensus 595 ~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~-~~~~~~~~i~~~L----~~~l~-----~~~~ 664 (1230)
T 1u6g_C 595 QIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI-DLRPVLGEGVPIL----ASFLR-----KNQR 664 (1230)
T ss_dssp HHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCC-CCHHHHHHHHHHH----HHHTT-----SCCH
T ss_pred HHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcccc-chHHHHHHHHHHH----HHHHH-----hCCH
Confidence 999999998888999999888776653211 12233333333221111 1334444444332 22332 3567
Q ss_pred chHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Q 003155 650 DVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 707 (843)
Q Consensus 650 D~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~ 707 (843)
+++......+.+++++++..+ ..+.+..++...+..+.-.+.+....++.++..++.
T Consensus 665 ~~r~~a~~al~~l~~~~~~~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 665 ALKLGTLSALDILIKNYSDSL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCTTC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 899999999999999988654 222233333222222334566678899999999986
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.53 E-value=5.3e-10 Score=137.03 Aligned_cols=545 Identities=8% Similarity=0.040 Sum_probs=321.9
Q ss_pred HHhHHHHHHHHHHhhhc----hhhHHHHHHHHHHHHhcCCCCCCccc---ccchhHHHHHhhcCC--CcchHHHHHHHHH
Q 003155 42 TSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVL---ASHPLVLTALSSLHS--EILSEASVNVISE 112 (843)
Q Consensus 42 ~~~~~~Vl~~l~~~l~~----~~~~~~~L~cl~sWi~~~~~i~~~~l---~~~~ll~~~~~~L~~--~~~~~~A~~~l~e 112 (843)
....+.+++.+...+.+ ++++..+++|+.+|+.+. ..+.- ....+++.+.+.+.+ +++|..|++++..
T Consensus 174 ~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI---KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC---HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44567777777777754 358999999999998752 11110 012366777776664 5789999999999
Q ss_pred HHhhhccCCCCCccCcHhHHH-HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHc----------CC---
Q 003155 113 LIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIAT----------GS--- 178 (843)
Q Consensus 113 ii~~~~~~~~~~~~~~~~li~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~----------~~--- 178 (843)
++..... ...+.+. .+++-+. ..+ .+.|++.....+.++..+++.....-.. .+
T Consensus 251 l~~~~~~-------~~~~~l~~~l~~~~~---~~~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (861)
T 2bpt_A 251 IMSKYYT-------FMKPYMEQALYALTI---ATM--KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA 318 (861)
T ss_dssp HHHHHGG-------GCHHHHHHTHHHHHH---HHT--TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHH---HHH--cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH
Confidence 9976532 1122232 3332221 111 2345555555666666666553211000 00
Q ss_pred -chHHHHHHHHHhhccCCC-------cchhhhhHHHHHHHHHHhccc--cccc-----ccCcccchHHHHHH--------
Q 003155 179 -DESMLIVHALLEVASHPE-------YDIASMTFNFWHSLQVILTKR--DSYI-----SFGNEASAEAERSR-------- 235 (843)
Q Consensus 179 -~~~~~ll~~ll~~~~~~~-------~~vs~~~~~FW~~l~~~~~~~--~~~~-----s~~~~~~~~~~~~~-------- 235 (843)
+....+++.++.....++ .+++..+......+.....+. +... .+. ++.+. .|..
T Consensus 319 ~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~-~r~~a~~~l~~i 396 (861)
T 2bpt_A 319 LSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT-ADNWR-NREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT-CSSHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcC-CCChh-HHHHHHHHHHHH
Confidence 123457777776665432 235445555544444332110 0000 000 00000 0100
Q ss_pred ----HHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcCh--
Q 003155 236 ----RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG-- 309 (843)
Q Consensus 236 ----~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~-- 309 (843)
....+.+++..+++.+++.+.-|. ...|.. +..++..++..+++
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~-------------~~vr~~-----------------a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQS-------------LQVKET-----------------TAWCIGRIADSVAESI 446 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSC-------------HHHHHH-----------------HHHHHHHHHHHHGGGS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCc-------------HHHHHH-----------------HHHHHHHHHHHhhhhc
Confidence 012345566666666666553211 112222 33444444443331
Q ss_pred --hHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCC----ccccchHHHhhhcc----CCCCcHHHHHHH
Q 003155 310 --DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV----VEAEVMPQVMALLP----KLPQQPQLLQTV 379 (843)
Q Consensus 310 --~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~----~~~~~l~~l~~~l~----~lp~~~~v~~t~ 379 (843)
...++.+.+.+.+.+. + +++...+++++++.+++.+.+ .-.++++.+++.|. +...++.+|..+
T Consensus 447 ~~~~~~~~~l~~l~~~l~-----~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQ-----D-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp CTTTTHHHHHHHHHHHHT-----S-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-----c-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence 3456666666666652 2 278889999999999988752 23466666666543 222347899999
Q ss_pred HHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC----------------CHHHHHHHHHHHHHHHHHhhhhhcCCHHHH
Q 003155 380 CLTIGAYSKWFDAASSDPSILASVLSILTSGMST----------------SEDTAAAAALAFRHICDDCRKKLCGYLDGL 443 (843)
Q Consensus 380 ~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~----------------~~~v~~~A~~a~~~lc~~c~~~l~~~~~~l 443 (843)
+.++|.........- ..++..+++.++..+.. ...++..++.++..+++.++..+.||++.+
T Consensus 521 ~~al~~l~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 598 (861)
T 2bpt_A 521 FSALTTMVEYATDTV--AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598 (861)
T ss_dssp HHHHHHHHHHCCGGG--HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred HHHHHHHHHHcchhh--HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999998877554321 13555655555544321 113678999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCh-hhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHH
Q 003155 444 YNVYRTAVNGEGSLKVSA-EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 522 (843)
Q Consensus 444 i~~~~~~~~~~~~~~l~~-~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 522 (843)
+..+...+... .. ..+...+.+++.++...+ ++..+++..++..++..+ +... .......+.
T Consensus 599 ~~~l~~~l~~~-----~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l----~~~~-------~~vr~~a~~ 661 (861)
T 2bpt_A 599 MGLFFRLLEKK-----DSAFIEDDVFYAISALAASLG-KGFEKYLETFSPYLLKAL----NQVD-------SPVSITAVG 661 (861)
T ss_dssp HHHHHHHHHST-----TGGGTHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHH----HCTT-------SHHHHHHHH
T ss_pred HHHHHHHHccC-----CCCcHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHh----cccc-------HHHHHHHHH
Confidence 99998888642 12 567778889998887753 334566666666555554 2111 111233467
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcC---
Q 003155 523 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ--- 599 (843)
Q Consensus 523 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~--- 599 (843)
.++.+.+.++ +.+.++...++|.+...+..-..+.++.+.+..+++.++...|..+.|+++.+++.+........
T Consensus 662 ~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 739 (861)
T 2bpt_A 662 FIADISNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENG 739 (861)
T ss_dssp HHHHHHHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7787777765 34566788888888777764223467889999999999999999999999999998887776422
Q ss_pred -----------CchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCC-c-CCchHHHHHHHHHHHHhhC
Q 003155 600 -----------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT-S-RPDVADDCFLLASRCIRYC 666 (843)
Q Consensus 600 -----------~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~-~-~pD~~~~~f~l~~~~~~~~ 666 (843)
...++...+.++...|.. .+.+...+..++......+. +.. . +.++++..+..+..+.+.+
T Consensus 740 d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~l~~~~~---d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 740 TLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQFIAQVAE---DPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHHHHHHHH---CHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHc---CcccCCcHHHHHHHHHHHHHHHHHc
Confidence 135667777777777753 12222223333222222222 111 1 6789999999999999987
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.53 E-value=2.1e-10 Score=140.86 Aligned_cols=574 Identities=9% Similarity=0.072 Sum_probs=329.9
Q ss_pred HHHhHHHHHHHHHHhhhch----hhHHHHHHHHHHHHhcCCCCCCcc---cccchhHHHHHhhcCC--CcchHHHHHHHH
Q 003155 41 LTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSV---LASHPLVLTALSSLHS--EILSEASVNVIS 111 (843)
Q Consensus 41 l~~~~~~Vl~~l~~~l~~~----~~~~~~L~cl~sWi~~~~~i~~~~---l~~~~ll~~~~~~L~~--~~~~~~A~~~l~ 111 (843)
+....+.++..+.+.+.++ +++..+++|+..|+.+ +..+. .....+++.+++.+.+ ++++..|++|+.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~---~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF---TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG---CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4556677888888777653 5889999999999875 22111 0012367777777764 477899999999
Q ss_pred HHHhhhccCCCCCccCcHhHHH-HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHH-------HcC------
Q 003155 112 ELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELI-------ATG------ 177 (843)
Q Consensus 112 eii~~~~~~~~~~~~~~~~li~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l-------~~~------ 177 (843)
.++..... ...+.+. .+++.+.. .+ .+.+++.....+..+..+++...... .+.
T Consensus 243 ~l~~~~~~-------~~~~~~~~~l~~~~~~---~~--~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (876)
T 1qgr_A 243 KIMSLYYQ-------YMETYMGPALFAITIE---AM--KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310 (876)
T ss_dssp HHHHHSGG-------GCHHHHTTTHHHHHHH---HH--TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHhHH-------HHHHHHHHHHHHHHHH---Hh--cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccch
Confidence 99975432 1122232 33333322 11 23445555555556666655432111 000
Q ss_pred -Cc----hHHHHHHHHHhhccCC-------CcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHH
Q 003155 178 -SD----ESMLIVHALLEVASHP-------EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYE 245 (843)
Q Consensus 178 -~~----~~~~ll~~ll~~~~~~-------~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 245 (843)
.. +...+++.++...... +.+++..+......+.+... ..++.
T Consensus 311 ~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-------------------------~~~~~ 365 (876)
T 1qgr_A 311 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-------------------------DDIVP 365 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-------------------------GGGHH
T ss_pred hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-------------------------HhhHH
Confidence 00 1245666666655432 22344444444333333221 01122
Q ss_pred HHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChh---HHHHHHHHHHHH
Q 003155 246 SLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD---ATLKILYIKFVE 322 (843)
Q Consensus 246 ~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~---~~l~~l~~~l~~ 322 (843)
.+++.+...+. + .+| ..|.. +..++..+....+++ ..++.+.+.+..
T Consensus 366 ~~l~~l~~~l~---~-~~~---------~~r~~-----------------a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~ 415 (876)
T 1qgr_A 366 HVLPFIKEHIK---N-PDW---------RYRDA-----------------AVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (876)
T ss_dssp HHHHHHHHHTT---C-SSH---------HHHHH-----------------HHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc---C-CCh---------HHHHH-----------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33333333221 1 111 12333 334444444333322 133334444444
Q ss_pred HHhhCCCCCCCcchhhHHHHHHHHhhccCCCc--cccchHHHhhhccC-CCCcHHHHHHHHHHHHhhHHHHhhC------
Q 003155 323 GVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDAA------ 393 (843)
Q Consensus 323 ~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~--~~~~l~~l~~~l~~-lp~~~~v~~t~~~~ig~y~~~l~~~------ 393 (843)
.+. +.++.-+++++++++.+++.+... ..++++.+++.+.. +.+++.++..++++++.+.+-...+
T Consensus 416 ~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 416 LMK-----DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHT-----CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HhC-----CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 442 567888999999999999987653 23556666655432 2335899999999999999877521
Q ss_pred -----CC-CchhHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhccc---CCCCCC
Q 003155 394 -----SS-DPSILASVLSILTSGMSTS----EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE---GSLKVS 460 (843)
Q Consensus 394 -----p~-~~~~l~~vl~~l~~~l~~~----~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~---~~~~l~ 460 (843)
++ -..|++.+++.++..+..+ ..++..+..++..++..+.....++++.++..+...+... .....+
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS 570 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 11 1138899999998887643 2378889999999998887777777777666655544310 000001
Q ss_pred -------hhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC
Q 003155 461 -------AEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH 533 (843)
Q Consensus 461 -------~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 533 (843)
.+.+..++++++.++..++.+...+++..++..++..+.. ... +...+ ...+..++.++...+
T Consensus 571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~---~~~v~--~~a~~~l~~l~~~~~- 640 (876)
T 1qgr_A 571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQS----TAG---SGGVQ--EDALMAVSTLVEVLG- 640 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------------CCHHH--HHHHHHHHHHHHHHG-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHh----ccC---CCCcc--HHHHHHHHHHHHHHH-
Confidence 1235668899999999887444555555555544443332 210 00011 223566777776543
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhc-CC----chHhHHHH
Q 003155 534 PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH-QQ----PCFLYLSS 608 (843)
Q Consensus 534 ~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~-~~----~~~L~l~~ 608 (843)
..+.+++.+++|.+...+... .+..++..++.+++.+++..|..+.|+++.+++.+...++.. .. ...+++++
T Consensus 641 -~~~~~~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~ 718 (876)
T 1qgr_A 641 -GEFLKYMEAFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFG 718 (876)
T ss_dssp -GGGGGGHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHH
Confidence 234456778889888888753 357788999999999999999999999999999998888752 11 36788888
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCC-------chHHHHHHHHHHHHhhCCCcc--------cCc
Q 003155 609 EVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP-------DVADDCFLLASRCIRYCPQLF--------IPS 673 (843)
Q Consensus 609 ~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~p-------D~~~~~f~l~~~~~~~~p~~~--------~~s 673 (843)
.++..+|.+ +.+.+..++..+.. .++...+ .+++ +++...+..+..+++...... .-.
T Consensus 719 ~i~~~~g~~--~~~~l~~~~~~l~~----~~~~~~~-~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 791 (876)
T 1qgr_A 719 DIALAIGGE--FKKYLEVVLNTLQQ----ASQAQVD-KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ 791 (876)
T ss_dssp HHHHHHGGG--GGGGHHHHHHHHHH----HHTCCCC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG
T ss_pred HHHHHhchh--HHHHHHHHHHHHHH----HHhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHH
Confidence 898888865 55666555554332 2321111 1122 455566666666665432110 002
Q ss_pred CCcHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhcc
Q 003155 674 SVFPSLVDCSMIGITVQ--HREASNSILTFLSDIFDL 708 (843)
Q Consensus 674 ~~l~~i~~~~~~~l~~~--e~~~~~s~~~fl~~li~~ 708 (843)
++++.++.......... +...-++|+..+..++..
T Consensus 792 ~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 828 (876)
T 1qgr_A 792 PRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTA 828 (876)
T ss_dssp GGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35666666554433333 445567788888887753
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.48 E-value=9.1e-13 Score=149.28 Aligned_cols=321 Identities=16% Similarity=0.157 Sum_probs=210.5
Q ss_pred HhHHHHHHHHHHhhhch----hhHHHHHHHHHHHHhcCCCCCCcccc--cchhHHHHHhhcCCC----cchHHHHHHHHH
Q 003155 43 SQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLA--SHPLVLTALSSLHSE----ILSEASVNVISE 112 (843)
Q Consensus 43 ~~~~~Vl~~l~~~l~~~----~~~~~~L~cl~sWi~~~~~i~~~~l~--~~~ll~~~~~~L~~~----~~~~~A~~~l~e 112 (843)
..|+.+++.|...++++ ..+..++.++...++- ..++.+. ...+++.+.+.|.++ ++|.+|++++..
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~---~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~ 200 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD---IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh---CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 37888999888888654 4888899999988762 2112211 245777788888754 578999999999
Q ss_pred HHhhhccCCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHH-HHHHHHHhh
Q 003155 113 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESM-LIVHALLEV 191 (843)
Q Consensus 113 ii~~~~~~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~ 191 (843)
++........ . ......+++.+ . ... .+.|++.....++.+..+++.+...+.. ++. .++++++.+
T Consensus 201 ~~~~~~~~~~----~-~~~~~~l~~~l---~-~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 201 SLEFTKANFD----K-ESERHFIMQVV---C-EAT-QCPDTRVRVAALQNLVKIMSLYYQYMET---YMGPALFAITIEA 267 (462)
T ss_dssp HTTTTHHHHT----S-HHHHHHHHHHH---H-HHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTT---TTTTTHHHHHHHH
T ss_pred HHHHHHHhhh----h-hHHHHHHHHHH---H-Hhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 8754321000 1 00001112211 1 111 2456677778999999999887655543 344 678888888
Q ss_pred ccCCCcchhhhhHHHHHHHHHHhcccccccc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhh
Q 003155 192 ASHPEYDIASMTFNFWHSLQVILTKRDSYIS---FGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLED 268 (843)
Q Consensus 192 ~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~ 268 (843)
...+++++...+++||..+++.......+.. .++.+.. ......+++++..+++.+++.+...++ +.+
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~p~l~~~l~~~d~-d~~---- 338 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE----HTSKFYAKGALQYLVPILTQTLTKQDE-NDD---- 338 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS----CCCCCHHHHHHHHHHHHHHHHTTCCCS-SCC----
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc----chhHHHHHHHhhhccHHHHHHHHhccc-ccc----
Confidence 8888999999999999999876421000000 0000000 011234566778888888887764432 111
Q ss_pred hHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhh
Q 003155 269 LKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 348 (843)
Q Consensus 269 ~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~ia 348 (843)
.+++ ..|.. +.+++..++..+| +.+++.+.+.+.+.+. +.+|+.++++++++++++
T Consensus 339 ~~~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~-----~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 339 DDDW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-----NPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp TTCC-SHHHH-----------------HHHHHHHHHHHTT-TTHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHTS
T ss_pred cccc-hHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHh
Confidence 1122 34556 8889999999888 6788888888887763 578999999999999999
Q ss_pred ccCCCc-cccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC
Q 003155 349 TYVSVV-EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS 412 (843)
Q Consensus 349 e~~~~~-~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~ 412 (843)
+++..+ -.+.++.+++.+.. + ..|+.||.++++++|++++|+...-....+++++++.++.+|+
T Consensus 395 ~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 988633 23455666665432 2 2489999999999999999998631001389999999988764
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.39 E-value=1.7e-09 Score=137.82 Aligned_cols=560 Identities=10% Similarity=0.076 Sum_probs=331.3
Q ss_pred HHHHHHHhhhc-hhhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCCC--cchHHHHHHHHHHHhhhccCCCCC
Q 003155 48 ALSTLTACLHI-NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGG 124 (843)
Q Consensus 48 Vl~~l~~~l~~-~~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~~--~~~~~A~~~l~eii~~~~~~~~~~ 124 (843)
+-++|.+..+. ++.+..+++-+...+... .+..+.-....+++.+++.|.++ ++|.+|+.++..+.....
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------ 80 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------ 80 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC------
Confidence 34455554333 368888888887765532 12111111246788888888754 789999999999886432
Q ss_pred ccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcC---CchHHHHHHHHHhhcc-CCCcchh
Q 003155 125 ATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATG---SDESMLIVHALLEVAS-HPEYDIA 200 (843)
Q Consensus 125 ~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~---~~~~~~ll~~ll~~~~-~~~~~vs 200 (843)
.+.+..+++.++ ..+. ++++......+..+..++....+.-... ......+++.++.+.. .++.++.
T Consensus 81 ----~~~~~~i~~~Ll---~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~ 151 (1230)
T 1u6g_C 81 ----EYQVETIVDTLC---TNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ 151 (1230)
T ss_dssp ----HHHHHHHHHHHH---HHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred ----HHHHHHHHHHHH---HHhc--CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 123333443332 2222 2333333334444444443221110000 0124578888888877 5778899
Q ss_pred hhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhcccc
Q 003155 201 SMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 280 (843)
Q Consensus 201 ~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~ 280 (843)
..+++.|..+++.... .+.|++.++++.++..+..|+ ...|..
T Consensus 152 ~~al~~l~~~~~~~~~----------------------~l~~~~~~ll~~l~~~L~~~~-------------~~vR~~-- 194 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGG----------------------LLVNFHPSILTCLLPQLTSPR-------------LAVRKR-- 194 (1230)
T ss_dssp HHHHHHHHHHHHHTCS----------------------SCTTTHHHHHHHHGGGGGCSS-------------HHHHHH--
T ss_pred HHHHHHHHHHHHHhHh----------------------HHHHHHHHHHHHHHHHHcCCc-------------HHHHHH--
Confidence 9999999998865421 112345566666766653221 134545
Q ss_pred ccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchH
Q 003155 281 CCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMP 360 (843)
Q Consensus 281 ~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~ 360 (843)
+..++..+....+ +..++.+++.+.+.+.. ..+|..+..++-+++.+++.+...-.++++
T Consensus 195 ---------------a~~al~~l~~~~~-~~~~~~~l~~l~~~L~~----~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 254 (1230)
T 1u6g_C 195 ---------------TIIALGHLVMSCG-NIVFVDLIEHLLSELSK----NDSMSTTRTYIQCIAAISRQAGHRIGEYLE 254 (1230)
T ss_dssp ---------------HHHHHHHHTTTC-----CTTHHHHHHHHHHH----TCSSCSCTTHHHHHHHHHHHSSGGGTTSCT
T ss_pred ---------------HHHHHHHHHHhcC-HHHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5566766666665 34444455555555532 223566678899999999887654445556
Q ss_pred HHhhhccCC--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-C-----------------------
Q 003155 361 QVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-S----------------------- 414 (843)
Q Consensus 361 ~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~-~----------------------- 414 (843)
.+++.+.+. ..++.+|.+++.+++.+++.+... ...+++.+++.+++.+.. +
T Consensus 255 ~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~ 332 (1230)
T 1u6g_C 255 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 332 (1230)
T ss_dssp THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHTTCCCCC------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH--HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccch
Confidence 666654322 236789999999999877754321 114788888888776631 0
Q ss_pred --------------HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH
Q 003155 415 --------------EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 480 (843)
Q Consensus 415 --------------~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~ 480 (843)
.+++..|+.++..++......+.++++.++..+...+. .-..+.|..++++++.++.....
T Consensus 333 ~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~ 407 (1230)
T 1u6g_C 333 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK-----EREENVKADVFHAYLSLLKQTRP 407 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS-----CSSSHHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhcc
Confidence 12577889999988874444455666666655544432 11356788889999888875321
Q ss_pred H--------------HHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHH
Q 003155 481 V--------------DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWP 546 (843)
Q Consensus 481 ~--------------~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (843)
. .....+..++..++..+.+.+.... .+.....+..++.++..+. ....+++++++|
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~-------~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 408 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS-------VKTRQCCFNMLTELVNVLP--GALTQHIPVLVP 478 (1230)
T ss_dssp C------------CCCHHHHHHHHTTHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHHHHST--TTTGGGHHHHHH
T ss_pred ccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHch--hhhHHHHHHHHH
Confidence 0 1234555666666666666554321 1112234666777776643 222346778888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHhhcCC---chHhHHHHHHHHHhCC-----C
Q 003155 547 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGS-----D 617 (843)
Q Consensus 547 ~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~-~~p~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~fg~-----~ 617 (843)
.+...+........+.+.++..+...+...++. +.|+++.+++.+...++.... ...+..+..++..+|. .
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~ 558 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS 558 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccc
Confidence 888777543323578888899998888776654 667777777777766654322 2357788888888886 1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCcccCcCCcHHHHHHHHHhccCCChhHHHH
Q 003155 618 PSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNS 697 (843)
Q Consensus 618 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~s~~l~~i~~~~~~~l~~~e~~~~~s 697 (843)
..+.+.+..++..+. ..+. ..+.+++++......+..++.+....+. +.++.+++.....+... .+-..
T Consensus 559 ~~~~~~~~~ll~~ll----~~l~---~~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~~e--~~r~~ 627 (1230)
T 1u6g_C 559 FDATPYIKDLFTCTI----KRLK---AADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLKNE--ITRLT 627 (1230)
T ss_dssp CCCHHHHHHHHHHHH----HHHS---CSSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTTSS--SHHHH
T ss_pred cchHHHHHHHHHHHH----HHHh---ccCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhccc--hhHHH
Confidence 124555555555543 3343 1346778999999999999988776553 35677777665555432 23345
Q ss_pred HHHHHHHhhc
Q 003155 698 ILTFLSDIFD 707 (843)
Q Consensus 698 ~~~fl~~li~ 707 (843)
++..+..+..
T Consensus 628 ~~~al~~i~~ 637 (1230)
T 1u6g_C 628 TVKALTLIAG 637 (1230)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6666666664
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.27 E-value=5.7e-09 Score=121.83 Aligned_cols=496 Identities=12% Similarity=0.106 Sum_probs=286.9
Q ss_pred hHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCC--CcchHHHHHHHHHHHhhhccC
Q 003155 44 QMEVALSTLTACLHI-NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAG 120 (843)
Q Consensus 44 ~~~~Vl~~l~~~l~~-~~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~--~~~~~~A~~~l~eii~~~~~~ 120 (843)
.++.++.+|...... ++++..+.+++..|... +.... ....+++.+...+.+ +.+|..|++++..+......
T Consensus 46 ~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~---~~~~~-~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~- 120 (588)
T 1b3u_A 46 TRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL---VGGPE-YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP- 120 (588)
T ss_dssp HHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG---GTSGG-GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc---cCcHH-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH-
Confidence 355677777766533 35888889999877664 21111 124577777666654 47899999999998865321
Q ss_pred CCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchh
Q 003155 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIA 200 (843)
Q Consensus 121 ~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs 200 (843)
......+.|.+ ..+.. +++.......+.++..++..... .....+++.+..+...++.+|+
T Consensus 121 --------~~~~~~l~~~l----~~l~~-~~~~~~R~~a~~~l~~~~~~~~~------~~~~~l~~~l~~l~~d~~~~VR 181 (588)
T 1b3u_A 121 --------SDLEAHFVPLV----KRLAG-GDWFTSRTSACGLFSVCYPRVSS------AVKAELRQYFRNLCSDDTPMVR 181 (588)
T ss_dssp --------HHHHHTHHHHH----HHHHT-CSSHHHHHHHGGGHHHHTTTSCH------HHHHHHHHHHHHHHTCSCHHHH
T ss_pred --------HHHHHHHHHHH----HHHhc-CCCcHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHhCCCCHHHH
Confidence 11111122222 12221 22333333334444443332111 1134678888888888999999
Q ss_pred hhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhcccc
Q 003155 201 SMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 280 (843)
Q Consensus 201 ~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~ 280 (843)
..+...|..+.+.... + .+...+++.+...+. | ++ ...|..
T Consensus 182 ~~a~~~l~~l~~~~~~-----------------~-------~~~~~l~~~l~~~~~---d------~~----~~vr~~-- 222 (588)
T 1b3u_A 182 RAAASKLGEFAKVLEL-----------------D-------NVKSEIIPMFSNLAS---D------EQ----DSVRLL-- 222 (588)
T ss_dssp HHHHHHHHHHHHTSCH-----------------H-------HHHHTHHHHHHHHHT---C------SC----HHHHTT--
T ss_pred HHHHHHHHHHHHHhcH-----------------H-------hHHHHHHHHHHHHhc---C------Cc----HHHHHH--
Confidence 9999999888764411 0 111223333333221 1 11 134555
Q ss_pred ccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc--ccc
Q 003155 281 CCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--AEV 358 (843)
Q Consensus 281 ~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~--~~~ 358 (843)
..+++..++..++++...+.+.+.+.+.+. +.+|+-+.+++.+++.+++.+..+. ...
T Consensus 223 ---------------a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-----d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 282 (588)
T 1b3u_A 223 ---------------AVEACVNIAQLLPQEDLEALVMPTLRQAAE-----DKSWRVRYMVADKFTELQKAVGPEITKTDL 282 (588)
T ss_dssp ---------------HHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-----CSSHHHHHHHHHTHHHHHHHHCHHHHHHTH
T ss_pred ---------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHhCcccchhHH
Confidence 667777777777765556666666666552 6789999999999999998765431 233
Q ss_pred hHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc
Q 003155 359 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC 437 (843)
Q Consensus 359 l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~ 437 (843)
++.++..+. .+++.||.++++.+|++.+.+........+++.+++.+...+.++ .+++..|+.++..++..+.+...
T Consensus 283 ~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 283 VPAFQNLMK--DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp HHHHHHHHT--CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 444444332 247899999999999998866432000025677777777777654 35999999999999987765431
Q ss_pred CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhh
Q 003155 438 GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL 517 (843)
Q Consensus 438 ~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~ 517 (843)
.+.++..+...+.. -..+.|..++++++.+....+.+... ..++ ..+.+.+... ..+..
T Consensus 361 --~~~l~p~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~~l----p~l~~~~~d~-------~~~vr 419 (588)
T 1b3u_A 361 --IEHLLPLFLAQLKD-----ECPEVRLNIISNLDCVNEVIGIRQLS---QSLL----PAIVELAEDA-------KWRVR 419 (588)
T ss_dssp --HHHTHHHHHHHHTC-----SCHHHHHHHHTTCHHHHHHSCHHHHH---HHHH----HHHHHHHTCS-------SHHHH
T ss_pred --HHHHHHHHHHHhCC-----CchHHHHHHHHHHHHHHHhcCHHHHH---HHHH----HHHHHHhcCC-------CchHH
Confidence 33444555555532 13678889999999999887654321 1222 2222333211 11222
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 003155 518 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 597 (843)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~ 597 (843)
...++.++.+.+.++. +. +...++|.+...+. ..+..+++.++.+++.+...+|... +++.+++.+.... .
T Consensus 420 ~~~~~~l~~l~~~~~~-~~---~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~-~ 490 (588)
T 1b3u_A 420 LAIIEYMPLLAGQLGV-EF---FDEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMS-G 490 (588)
T ss_dssp HHHHHHHHHHHHHHCG-GG---CCHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHcCH-HH---HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHh-h
Confidence 2335667776665543 21 12345666655442 2356789999999999988877642 1233444433222 2
Q ss_pred cCC----chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCC
Q 003155 598 HQQ----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 667 (843)
Q Consensus 598 ~~~----~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p 667 (843)
.+. ...+++++.+...+|.+ .. ...+.......++ +.+|+++......+.++.+...
T Consensus 491 ~~~~~~R~~a~~~l~~l~~~~~~~----~~----~~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 491 DPNYLHRMTTLFCINVLSEVCGQD----IT----TKHMLPTVLRMAG-----DPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHH----HH----HHHTHHHHHHGGG-----CSCHHHHHHHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHH----HH----HHHHHHHHHhhCC-----CCCchHHHHHHHHHHHHHHHhc
Confidence 221 13455666666555532 11 1222222233332 3568888888888888877553
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.90 E-value=8.1e-07 Score=103.42 Aligned_cols=435 Identities=10% Similarity=0.061 Sum_probs=253.4
Q ss_pred HHHHHHHHHHhhhc--hhhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCC--CcchHHHHHHHHHHHhhhccC
Q 003155 45 MEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAG 120 (843)
Q Consensus 45 ~~~Vl~~l~~~l~~--~~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~--~~~~~~A~~~l~eii~~~~~~ 120 (843)
...++..|...+.+ +.++..+.+++..-... .+.+.+ ...+++.+.+...+ +..|..|+.++..+.....
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~---~~~~~~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-- 158 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHE---HSPSDL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-- 158 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT---SCHHHH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC--
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH---CCHHHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--
Confidence 45566666666544 35899999999988763 332221 23355555555443 3668888888877664322
Q ss_pred CCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccCCCcchh
Q 003155 121 SSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIA 200 (843)
Q Consensus 121 ~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs 200 (843)
......++|.+..+ + .+++.+.....+..+..+++....- .....+++.++.+.+.++..++
T Consensus 159 --------~~~~~~l~~~l~~l---~--~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d~~~~vr 220 (588)
T 1b3u_A 159 --------SAVKAELRQYFRNL---C--SDDTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLASDEQDSVR 220 (588)
T ss_dssp --------HHHHHHHHHHHHHH---H--TCSCHHHHHHHHHHHHHHHHTSCHH-----HHHHTHHHHHHHHHTCSCHHHH
T ss_pred --------HHHHHHHHHHHHHH---h--CCCCHHHHHHHHHHHHHHHHHhcHH-----hHHHHHHHHHHHHhcCCcHHHH
Confidence 11223333333221 1 2445555555666665555432110 0124577888888888888999
Q ss_pred hhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhcccc
Q 003155 201 SMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 280 (843)
Q Consensus 201 ~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~ 280 (843)
..++..+..+.+.... ....+.+.|.+.+++ .| .+ + ..|..
T Consensus 221 ~~a~~~l~~l~~~~~~-----------------~~~~~~~~~~l~~~~----------~d-~~--------~-~vR~~-- 261 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQ-----------------EDLEALVMPTLRQAA----------ED-KS--------W-RVRYM-- 261 (588)
T ss_dssp TTHHHHHHHHHHHSCH-----------------HHHHHHTHHHHHHHH----------TC-SS--------H-HHHHH--
T ss_pred HHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHHc----------cC-CC--------H-HHHHH--
Confidence 9999998888764421 011122233322221 11 11 1 24555
Q ss_pred ccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccc--cc
Q 003155 281 CCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA--EV 358 (843)
Q Consensus 281 ~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~--~~ 358 (843)
+.+++..++...|++.+.+.+.+.+.+.+. +.+|.-++++..+++.+++.+..+.. .+
T Consensus 262 ---------------a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 262 ---------------VADKFTELQKAVGPEITKTDLVPAFQNLMK-----DCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp ---------------HHHTHHHHHHHHCHHHHHHTHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred ---------------HHHHHHHHHHHhCcccchhHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 666777766666655444556666666652 67898999999999999998875421 33
Q ss_pred hHHHhhhccCC--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhh
Q 003155 359 MPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKK 435 (843)
Q Consensus 359 l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~ 435 (843)
++.+++.+..+ ..++.+|.++++.+|.++.++.... ..+.+++.+...+.++ .+|+..|..++..+++.....
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 397 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN----TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR 397 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH----HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH
Confidence 44455444322 2378999999999999999886431 3456666666666654 349999999999999865432
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCch
Q 003155 436 LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPR 515 (843)
Q Consensus 436 l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~ 515 (843)
. +.+.++..+...+.. -....|..++++++.+...++.+...+ .++..+.+.+.... ..
T Consensus 398 ~--~~~~~lp~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~~~~~~-------~l~~~l~~~l~d~~-------~~ 456 (588)
T 1b3u_A 398 Q--LSQSLLPAIVELAED-----AKWRVRLAIIEYMPLLAGQLGVEFFDE-------KLNSLCMAWLVDHV-------YA 456 (588)
T ss_dssp H--HHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHCGGGCCH-------HHHHHHHHGGGCSS-------HH
T ss_pred H--HHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHcCHHHHHH-------HHHHHHHHHhcCCc-------HH
Confidence 1 233444444454431 235678889999999888765532111 11222222232111 11
Q ss_pred hhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 003155 516 DLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLY 595 (843)
Q Consensus 516 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~ 595 (843)
-....+..++.+.+.++. + .+...++|.+..... ..+..++..++.++..+.+.++... +.+.+++.+...+
T Consensus 457 Vr~~a~~~l~~l~~~~~~-~---~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l 528 (588)
T 1b3u_A 457 IREAATSNLKKLVEKFGK-E---WAHATIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528 (588)
T ss_dssp HHHHHHHHHHHHHHHHCH-H---HHHHHTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhCc-h---hHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhC
Confidence 112236677777766542 2 135666776654332 2356778888888888877766542 4455555555443
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.76 E-value=6.8e-05 Score=92.69 Aligned_cols=269 Identities=9% Similarity=0.002 Sum_probs=155.1
Q ss_pred CcchhhHHHHHHHHhhccCCCccccchHHHhhhcc-CC-CCcHHHHHHHHHHHHhhHHHHh-------h-CCC-CchhHH
Q 003155 333 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFD-------A-ASS-DPSILA 401 (843)
Q Consensus 333 ~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~-~l-p~~~~v~~t~~~~ig~y~~~l~-------~-~p~-~~~~l~ 401 (843)
+-.-+-+++++++.+++.+.. +.+..+++.+. .+ .++++|+..+++++.++.+-.. . .++ -..|++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 334467899999999998742 34555554432 12 2379999999999999876321 0 000 114889
Q ss_pred HHHHHHHhccCCC----HH--HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHH
Q 003155 402 SVLSILTSGMSTS----ED--TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 475 (843)
Q Consensus 402 ~vl~~l~~~l~~~----~~--v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi 475 (843)
++++.++..++.. .+ ....+..++.++++.....+.||++.+++.+...+.......-...-+..++|++|.++
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 9999888877653 22 34688999999999999999999999988877766431000112344566999999999
Q ss_pred hcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhc--------------------cCCcc
Q 003155 476 TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY--------------------VNHPE 535 (843)
Q Consensus 476 ~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------------------~~~~~ 535 (843)
++..++....+.+.++.++.. ++...... ..... ++.++.+.+. ++.+.
T Consensus 628 ~~~~~~~~~~~~~~~~p~~~~----iL~~~~~~----~~~~~---~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 696 (960)
T 1wa5_C 628 NYTQRQNLPLLVDSMMPTFLT----VFSEDIQE----FIPYV---FQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG 696 (960)
T ss_dssp HTSCGGGHHHHHHHHHHHHHH----HHHTTCTT----THHHH---HHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT
T ss_pred hcCCcchHHHHHHHHHHHHHH----HHHhhhHh----hHHHH---HHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC
Confidence 986655555555554433332 22222110 01111 1222222211 11100
Q ss_pred ---hHHHHHHHH----------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHhhcCCc
Q 003155 536 ---AVADAIQRL----------WPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQP 601 (843)
Q Consensus 536 ---~~~~~~~~~----------~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~-~~p~l~~l~~~l~~~~~~~~~~ 601 (843)
+....+..+ +..+..++.....+...-+.+|.++..++..++.. +.|++|.+++.+.+..+..+..
T Consensus 697 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 697 NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 001111111 01112222221111111256888888888887777 9999999999998887765444
Q ss_pred h----HhHHHHHHHHHhC
Q 003155 602 C----FLYLSSEVIKIFG 615 (843)
Q Consensus 602 ~----~L~l~~~li~~fg 615 (843)
. ++...+.++..+|
T Consensus 777 ~~~~~~l~~~~~~~~~~~ 794 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLG 794 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcC
Confidence 3 3445555554554
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.28 E-value=1.5e-05 Score=89.59 Aligned_cols=303 Identities=11% Similarity=0.039 Sum_probs=172.2
Q ss_pred hhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCC--CcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccC---C
Q 003155 296 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHN--EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK---L 369 (843)
Q Consensus 296 ~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~--~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~---l 369 (843)
++.++..++...+++.-++.+.+.+.+.+. +. ++..+|+++.+++.+.+....+ ...+++.+++.+.+ -
T Consensus 109 ~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~-----~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 109 ASQCVAGIACAEIPVNQWPELIPQLVANVT-----NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK 183 (462)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCC
Confidence 555666555444332223334455555443 23 7899999999999999876432 24445555554422 1
Q ss_pred CC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHH
Q 003155 370 PQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLD-GLYNV 446 (843)
Q Consensus 370 p~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~-~li~~ 446 (843)
+. ++.||..++++++....++..+.+...+...+++.+...+.++ .+++..|+.+|..+++.+.+.+.+|++ .+++.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 263 (462)
T 1ibr_B 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263 (462)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 6899999999999877666543321111233455555555443 348899999999999999988889998 88887
Q ss_pred HHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH----------------HHHHHHHHHhhhHHHHHHHHHHhcCCcccc
Q 003155 447 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ----------------VDAKKALEMLCLPVVTPLQEIINQGPEILQ 510 (843)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~----------------~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~ 510 (843)
+...+.. ...+.+...++.++.+...... ......+...+..++..+-+.+........
T Consensus 264 ~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~ 338 (462)
T 1ibr_B 264 TIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD 338 (462)
T ss_dssp HHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccc
Confidence 7666542 2466777788877777654200 000001111222233333333332211100
Q ss_pred ccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHH
Q 003155 511 KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILE 589 (843)
Q Consensus 511 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~-~~~~p~l~~l~~ 589 (843)
+..........+.|+.+...++ +. ++..++|.+...+. ..+..+.+.++.+++.+..... ..+.++++.+++
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~--~~---~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~ 411 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCE--DD---IVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTT--TT---HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHH
T ss_pred cccchHHHHHHHHHHHHHHhcc--HH---HHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1111111223556666665544 22 44556666666554 2467788999999988776544 334455566666
Q ss_pred HHHHHHhhcCCc----hHhHHHHHHHHHhCC
Q 003155 590 EIQGLYQQHQQP----CFLYLSSEVIKIFGS 616 (843)
Q Consensus 590 ~l~~~~~~~~~~----~~L~l~~~li~~fg~ 616 (843)
.+...++. +++ ...+.++.+...++.
T Consensus 412 ~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 412 TLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHGGGC-SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHhccc
Confidence 66655532 232 345566666666654
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.24 E-value=6.1e-06 Score=84.54 Aligned_cols=185 Identities=11% Similarity=0.153 Sum_probs=130.6
Q ss_pred CCCcchhhHHHHHHHH-hhccCCCcc--ccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhHHHHh-hCCCCc-hhHHH
Q 003155 331 HNEWRPAEAALFCIRA-ISTYVSVVE--AEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFD-AASSDP-SILAS 402 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~-iae~~~~~~--~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l~-~~p~~~-~~l~~ 402 (843)
+.+|+++-+++-++.. +.++++.-. ..-...+++.|.. + ..|+.|+..++.++|.+++.+. .. .. .|...
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHH
Confidence 6789999999999999 887654322 2222344544422 2 3489999999999999999885 32 22 38899
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH
Q 003155 403 VLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 480 (843)
Q Consensus 403 vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~-~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~ 480 (843)
+++.++..+.+. ..|+.+|..|+..+|+.|.+... +|++.+++.+...+.. + ....|...+..++.++...+.
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----k-~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----K-TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----S-SHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----C-ChHHHHHHHHHHHHHHHHcCC
Confidence 999999988765 34889999999999999866332 3499999988888753 3 467888999999999987654
Q ss_pred --HHHHHHHHHhh-hHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC
Q 003155 481 --VDAKKALEMLC-LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH 533 (843)
Q Consensus 481 --~~~~~~l~~l~-~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 533 (843)
....++ + ..++..+.+++..... ..| ....++++.+.+.++.
T Consensus 180 ~~~~l~~~----l~~~iip~l~~~l~D~~~-----~VR--~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQRY----LKDEVVPIVIQIVNDTQP-----AIR--TIGFESFAILIKIFGM 224 (249)
T ss_dssp CSHHHHHH----HTTTHHHHHHHHHTCSSH-----HHH--HHHHHHHHHHHHHHCS
T ss_pred cchhHHHH----HHHHHHHHHHHHhcCCCH-----HHH--HHHHHHHHHHHHHhCH
Confidence 333333 4 4455555666643321 122 3347888888887765
No 24
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.00 E-value=0.078 Score=65.34 Aligned_cols=301 Identities=9% Similarity=0.086 Sum_probs=168.3
Q ss_pred CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC-C--CHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Q 003155 371 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-T--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 447 (843)
Q Consensus 371 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~-~--~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~ 447 (843)
.+.+-+.+++..+|+.++-+..... ..++.+++.+ ..+. + +..|+..|++++.++++-...+- .|++.+++.+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~--~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l 551 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK--RQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLL 551 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC--------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHH
Confidence 4568899999999998875543322 3788888844 4443 1 33499999999999998766443 6777777776
Q ss_pred HHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHh
Q 003155 448 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 527 (843)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 527 (843)
...++ ...+.....++..++... ...+...+.++++.+.++++.... ..+.....++.++.+
T Consensus 552 ~~~l~--------~~v~~~A~~al~~l~~~~-----~~~l~p~~~~ll~~l~~~l~~~~~-----~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 552 VRGLN--------SSMSAQATLGLKELCRDC-----QLQLKPYADPLLNACHASLNTGRM-----KNSDSVRLMFSIGKL 613 (971)
T ss_dssp HHHHH--------SSCHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHSTTS-----CHHHHHHHHHHHHHH
T ss_pred HHHhC--------hHHHHHHHHHHHHHHHHH-----HHhccccHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHHH
Confidence 66552 123566677777777544 233556667777777777765321 112233446888888
Q ss_pred hhccCCcchHHHHHHHHHHHHHHHHHhhcC----CHHHHHH---HHHHHHHHHHhhhh-------------hhhhhHHHH
Q 003155 528 FRYVNHPEAVADAIQRLWPIFKAIFDIRAW----DMRTMES---LCRACKYAVRTSKR-------------FMGITIGAI 587 (843)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~l~~il~~~~~----~~~i~e~---~~~~l~~~i~~~~~-------------~~~p~l~~l 587 (843)
+.... ++...++++++++.+...+..... +.+-... ....+..+++.++. .+.++.+.+
T Consensus 614 ~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 692 (971)
T 2x1g_F 614 MSLLR-PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692 (971)
T ss_dssp HHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT
T ss_pred HHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH
Confidence 87654 344555666655544443332211 2222222 22333334444332 244556666
Q ss_pred HHHHHHHHhhcC-C----chHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHH
Q 003155 588 LEEIQGLYQQHQ-Q----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRC 662 (843)
Q Consensus 588 ~~~l~~~~~~~~-~----~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~ 662 (843)
++.+...++... . ...+.+++.++..+|.+ +.+.+..++..+ +..++ .++. ..|+.++..+
T Consensus 693 ~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~--~~p~l~~~~~~l----~~~~~------~~~~--~~~l~l~~~~ 758 (971)
T 2x1g_F 693 MPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS--FQPMLQDLCLFI----VASFQ------TRCC--APTLEISKTA 758 (971)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----CTHHHHHHHHH----HHHCC--------CC--HHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh--ccccHHHHHHHH----HHHHh------cCCc--hHHHHHHHHH
Confidence 666666555432 2 23456777778888876 555555444333 33233 2222 4588999998
Q ss_pred HhhCCCc--ccC--cCCcHHHHHHHHHhccC-------CChhHHHHHHHHHHHhhcc
Q 003155 663 IRYCPQL--FIP--SSVFPSLVDCSMIGITV-------QHREASNSILTFLSDIFDL 708 (843)
Q Consensus 663 ~~~~p~~--~~~--s~~l~~i~~~~~~~l~~-------~e~~~~~s~~~fl~~li~~ 708 (843)
++..... ..+ .+.+..++......+.. .+++..++.+.|+..++..
T Consensus 759 i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~ 815 (971)
T 2x1g_F 759 IVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK 815 (971)
T ss_dssp HTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHh
Confidence 8865431 111 11233334433333322 3678889999999999963
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.95 E-value=2.7e-05 Score=79.38 Aligned_cols=178 Identities=12% Similarity=0.139 Sum_probs=121.3
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l 407 (843)
+.+|..+.+++.++..+.++.+.-....+.++++.|.. + ..|+.|+..++.++|.++.-+...-. .+.+.+++.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~--~~~~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS--NYASACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHH
Confidence 68899999999999999887543222233555555432 2 24899999999999999987764321 4788899999
Q ss_pred HhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH-HHHH
Q 003155 408 TSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKK 485 (843)
Q Consensus 408 ~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~-~~~~ 485 (843)
+..+.++ ..|+.+|+.|+..++..+ .++.++..+...+.. + ....|..++..++.++....++ ....
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~----~-~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN----K-NPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC----S-CHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC----C-ChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 9888765 349999999999998753 356677777676642 2 4678999999999999887443 2345
Q ss_pred HHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccC
Q 003155 486 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 532 (843)
Q Consensus 486 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 532 (843)
++..++..+ ..++.... ........++++.+.+.++
T Consensus 173 ~l~~l~p~l----~~~l~D~~-------~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 173 LLKLLTTSL----VKTLNEPD-------PTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHH----HHHHTSSC-------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH----HHHhcCCC-------hHHHHHHHHHHHHHHHHcC
Confidence 555544444 44443221 1112233677777776655
No 26
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.81 E-value=0.15 Score=62.71 Aligned_cols=577 Identities=10% Similarity=0.029 Sum_probs=264.9
Q ss_pred HHHHHHHHHHhhhc--hhhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcC---CCcchHHHHHHHHHHHhhhcc
Q 003155 45 MEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH---SEILSEASVNVISELIHYSAA 119 (843)
Q Consensus 45 ~~~Vl~~l~~~l~~--~~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~---~~~~~~~A~~~l~eii~~~~~ 119 (843)
...+.+.+.....+ ++.+..|-+-+..|-.- ......+...|. ++++|-.|+..+.+.+.+...
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~ 91 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS 91 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH
Confidence 34455555553332 35677777777776542 123333444443 457899999999998876432
Q ss_pred CCCCCccCcHhHHHHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchHHHHHHHHHhhccC-----
Q 003155 120 GSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASH----- 194 (843)
Q Consensus 120 ~~~~~~~~~~~li~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~----- 194 (843)
.-+. +.+..+-..++..+. .. .....-....++.+++.++....+ + .-.++++-++.+.+.
T Consensus 92 ~l~~--~~~~~ir~~ll~~l~----~~--~~~~~~ir~kl~~~la~i~~~~~p---~---~Wp~~l~~l~~~~~~~~~~~ 157 (963)
T 2x19_B 92 DIPT--DQYESLKAQLFTQIT----RF--ASGSKIVLTRLCVALASLALSMMP---D---AWPCAVADMVRLFQAEDSPV 157 (963)
T ss_dssp GSCG--GGHHHHHHHHHHHHH----HT--TTSCHHHHHHHHHHHHHHHHHHTT---T---TSTTHHHHHHHHHCC-----
T ss_pred hCCH--HHHHHHHHHHHHHHH----HH--cCCCHHHHHHHHHHHHHHHHHhCc---c---ccchHHHHHHHHHhhhccCC
Confidence 1111 121222222222221 11 112344566788888887766542 1 122355555555443
Q ss_pred CCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHh
Q 003155 195 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKH 274 (843)
Q Consensus 195 ~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~ 274 (843)
++.......+.+|..+.|++.+.. + .. ..|......+...+..+++.+..-+..+.+ + + .
T Consensus 158 ~~~~~~~~~l~iL~~l~ee~~~~~-~---~~-----~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~----~-~------~ 217 (963)
T 2x19_B 158 DGQGRCLALLELLTVLPEEFQTSR-L---PQ-----YRKGLVRTSLAVECGAVFPLLEQLLQQPSS----P-S------C 217 (963)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTCC-C-----------------CCSGGGHHHHHHHHHHHHSCTTC----C-H------H
T ss_pred CcHHHHHHHHHHHHhCHHHHhccc-C---cH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----c-h------H
Confidence 355577899999999998775321 0 00 011111111112222222222222211111 1 1 1
Q ss_pred hhccccccCCCcchhhhhhchhhHHHHHHhhhcChhH-HHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCC
Q 003155 275 TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA-TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 353 (843)
Q Consensus 275 ~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~-~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~ 353 (843)
.+.. +.+++..... +|... ....+.+.+-+.+ .+|+-.++++-|+..+...-..
T Consensus 218 ~~~~-----------------~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l-------~~~~~~~~a~~~l~~i~~~~~~ 272 (963)
T 2x19_B 218 VRQK-----------------VLKCFSSWVQ-LEVPLQDCEALIQAAFAAL-------QDSELFDSSVEAIVNAISQPDA 272 (963)
T ss_dssp HHHH-----------------HHHHHHHHHT-SSCCGGGTHHHHHHHHHHT-------TSTTTHHHHHHHHHHHHTCTTG
T ss_pred HHHH-----------------HHHHHHHHHc-CCCCcccchHHHHHHHHHh-------CCchHHHHHHHHHHHHHccccc
Confidence 2222 3344433222 23110 0022233333332 3577889999999998875322
Q ss_pred c-cccchHHHhhhccCC---------CCcHHHHHHHHHHHHhhH----HHHhhCCCCchhHHHHHHHHHhccCC------
Q 003155 354 V-EAEVMPQVMALLPKL---------PQQPQLLQTVCLTIGAYS----KWFDAASSDPSILASVLSILTSGMST------ 413 (843)
Q Consensus 354 ~-~~~~l~~l~~~l~~l---------p~~~~v~~t~~~~ig~y~----~~l~~~p~~~~~l~~vl~~l~~~l~~------ 413 (843)
. ..+.+..+++.+.+. ..+.......+.++.+|. .++..++.....+..++.+++....+
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 352 (963)
T 2x19_B 273 QRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPV 352 (963)
T ss_dssp GGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred ccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 1 123333343332221 112344455556655554 44543211112567888888765543
Q ss_pred CHHHHHHHHHHHHHHHHH-----------hhhhhcCCHHHHHHHHHHhhcccCCCC---CChhh-------HHHHHHHHH
Q 003155 414 SEDTAAAAALAFRHICDD-----------CRKKLCGYLDGLYNVYRTAVNGEGSLK---VSAED-------SLHLVEALS 472 (843)
Q Consensus 414 ~~~v~~~A~~a~~~lc~~-----------c~~~l~~~~~~li~~~~~~~~~~~~~~---l~~~~-------~~~l~eaig 472 (843)
.+++...|..-...++++ +...+.|++..++..+......++... .+.++ |..+.+.+.
T Consensus 353 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~ 432 (963)
T 2x19_B 353 NETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLM 432 (963)
T ss_dssp TCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHH
Confidence 123555555555666653 233455777777777655553211100 01111 111222222
Q ss_pred HHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhcc------------------CCc
Q 003155 473 MVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV------------------NHP 534 (843)
Q Consensus 473 ~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------------------~~~ 534 (843)
.+....+. .++..+++.+.+.+++...+ . .-+..-..+-.++.+.+++ ..+
T Consensus 433 ~~~~~~~~--------~~l~~~~~~l~~~l~~~~~~-~--~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~ 501 (963)
T 2x19_B 433 YVYEMLGA--------ELLSNLYDKLGRLLTSSEEP-Y--SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISIS 501 (963)
T ss_dssp HHHHHHTH--------HHHHHHHHHHHHHHHTCCCS-C--CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCC
T ss_pred HHHHHccH--------HHHHHHHHHHHHHHHhcCCC-C--chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCC
Confidence 22222221 12233333333333211000 0 0011111122222222221 111
Q ss_pred chHH------------HHH----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhc
Q 003155 535 EAVA------------DAI----QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH 598 (843)
Q Consensus 535 ~~~~------------~~~----~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~ 598 (843)
+|.+ .++ +.+-+++..++... .+..+...+|.++.+..+.++..+.|+++.+++.+...+...
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~ 580 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ 580 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 2211 001 11122233333322 346788899999999998888889999999999888777653
Q ss_pred CC--ch---HhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHH---HHHHHHHHHHhhCCCcc
Q 003155 599 QQ--PC---FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVAD---DCFLLASRCIRYCPQLF 670 (843)
Q Consensus 599 ~~--~~---~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~---~~f~l~~~~~~~~p~~~ 670 (843)
.. .. ++..++.++...+ .+...+.+..++..+.+..-...++ ..+++.+. .+++.+..+.+......
T Consensus 581 ~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~----~~~~~~~~~~~~~l~~l~~i~~~~~~~~ 655 (963)
T 2x19_B 581 IHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEE----IPNPSNKLAIVHILGLLSNLFTTLDISH 655 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSS----CSCHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred CCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 22 12 2334444443332 1224455555555544333222221 12455444 45666666666543221
Q ss_pred c-----------------Cc---CCcHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcc
Q 003155 671 I-----------------PS---SVFPSLVDCSMIGIT--VQHREASNSILTFLSDIFDL 708 (843)
Q Consensus 671 ~-----------------~s---~~l~~i~~~~~~~l~--~~e~~~~~s~~~fl~~li~~ 708 (843)
- +. +.++.++......+. ..+......++.++..++..
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 656 HEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKT 715 (963)
T ss_dssp CC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHh
Confidence 0 01 134444544433332 35667788899999998763
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.74 E-value=0.02 Score=65.24 Aligned_cols=384 Identities=13% Similarity=0.088 Sum_probs=201.8
Q ss_pred HHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHH-HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHH
Q 003155 90 VLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 166 (843)
Q Consensus 90 l~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~ 166 (843)
++.+++.|. +++++..|+.++..+++..... ....++. .++|.++ ..+. ..++.+.....+..+..+
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------~~~~~~~~g~v~~Lv---~lL~-~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP------PIEEVIQSGVVPRFV---QFLT-REDFPQLQFEAAWALTNI 145 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------CHHHHHHTTCHHHHH---HHHT-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHH---HHhC-CCCCHHHHHHHHHHHHHH
Confidence 455555665 4578899999999988654310 1111111 1122222 2222 222245544555555555
Q ss_pred hhH---HHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHH
Q 003155 167 GDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 243 (843)
Q Consensus 167 ~e~---~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 243 (843)
+.. +...+.. ...++.++.+...++.++...++..+..++..-. ..+..
T Consensus 146 ~~~~~~~~~~~~~-----~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-----------------------~~~~~ 197 (528)
T 4b8j_A 146 ASGTSENTKVVID-----HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-----------------------KCRDL 197 (528)
T ss_dssp HTSCHHHHHHHHH-----TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred hCCCHHHHHHHHh-----CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-----------------------hhHHH
Confidence 542 2222322 1467788888888888898888887777754210 01111
Q ss_pred HH--HHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcC--hhHHHHHHHHH
Q 003155 244 YE--SLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG--GDATLKILYIK 319 (843)
Q Consensus 244 ~~--~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~--~~~~l~~l~~~ 319 (843)
+. ..++.++..+...++ ...|.. +..++..++..-. .......+.+.
T Consensus 198 i~~~g~l~~Ll~lL~~~~~------------~~v~~~-----------------a~~~L~~L~~~~~~~~~~~~~~~l~~ 248 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTK------------LSMLRN-----------------ATWTLSNFCRGKPQPSFEQTRPALPA 248 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCC------------HHHHHH-----------------HHHHHHHHHCSSSCCCHHHHTTHHHH
T ss_pred HHHCCcHHHHHHHHhcCCC------------HHHHHH-----------------HHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 11 234444544421111 112333 5556665553211 01122223444
Q ss_pred HHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhh--
Q 003155 320 FVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA-- 392 (843)
Q Consensus 320 l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~-- 392 (843)
|.+.+. +.++.-++.++++++.++.+.... +...++.++..|.. .++.++..+++++|..+.--..
T Consensus 249 L~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 249 LARLIH-----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHC-----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCHHHH
Confidence 444442 567888999999999999764322 13456677766643 2689999999999988751110
Q ss_pred ----CCCCchhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhh---hhc--CCHHHHHHHHHHhhcccCCCCCChh
Q 003155 393 ----ASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAE 462 (843)
Q Consensus 393 ----~p~~~~~l~~vl~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~~---~l~--~~~~~li~~~~~~~~~~~~~~l~~~ 462 (843)
+.. .++.++..+. +. ...++..|++++.+++..... .+. +.++.|+..+..- +.+
T Consensus 322 ~~~~~~~---~l~~L~~lL~---~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~---------~~~ 386 (528)
T 4b8j_A 322 QCIIDHQ---ALPCLLSLLT---QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA---------EFD 386 (528)
T ss_dssp HHHHTTT---HHHHHHHHHH---SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS---------CHH
T ss_pred HHHHHhh---hHHHHHHHHc---CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC---------CHH
Confidence 111 3444444432 12 234999999999999853332 222 4455555544321 357
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC--------c
Q 003155 463 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------P 534 (843)
Q Consensus 463 ~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~ 534 (843)
.+.....+++.+.....++......+ ...+..+.+++.... ..-....+..|..+++.... .
T Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~---~~~i~~L~~lL~~~d-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 456 (528)
T 4b8j_A 387 IKKEAAWAISNATSGGSHDQIKYLVS---EGCIKPLCDLLICPD-------IRIVTVCLEGLENILKVGETDKTLAAGDV 456 (528)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH---CCCHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 78889999999988744433332221 233444445444321 11223346667776654311 1
Q ss_pred chHHHHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 003155 535 EAVADAIQRL--WPIFKAIFDIRAWDMRTMESLCRACKYAVR 574 (843)
Q Consensus 535 ~~~~~~~~~~--~~~l~~il~~~~~~~~i~e~~~~~l~~~i~ 574 (843)
+++...+.+. +..+..+. ...+.++.+.+..++.+.+.
T Consensus 457 ~~~~~~i~~~~~~~~l~~L~--~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 457 NVFSQMIDEAEGLEKIENLQ--SHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp CHHHHHHHHTTHHHHHHHGG--GCSSHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCcHHHHHHHH--cCCCHHHHHHHHHHHHHHCC
Confidence 2333333322 33343332 12467788887777776653
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.73 E-value=0.0018 Score=72.02 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=183.6
Q ss_pred HHHHHHhhhc--hhhHHHHHHHHHHHHhcCCCCCCcccccc-hhHHHHHhhcCCC---cchHHHHHHHHHHHhhhccCCC
Q 003155 49 LSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSS 122 (843)
Q Consensus 49 l~~l~~~l~~--~~~~~~~L~cl~sWi~~~~~i~~~~l~~~-~ll~~~~~~L~~~---~~~~~A~~~l~eii~~~~~~~~ 122 (843)
++.+...+++ ++.+..++.++...+.....-+...+... .+++.+.+.|.++ +++..|+.++..+......
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~--- 98 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL--- 98 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH---
Confidence 4555555554 35888999999987652111111222234 7888888888754 7889999999998863221
Q ss_pred CCccCcHhHHH-HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhH---HHHHHHcCCchHHHHHHHHHhhccC-CCc
Q 003155 123 GGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVASH-PEY 197 (843)
Q Consensus 123 ~~~~~~~~li~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~-~~~ 197 (843)
....++. ..+|.+. ..+. +++.+.....+..+..++.. ....+.+ ...++.++.+... ++.
T Consensus 99 ----~~~~~~~~~~i~~L~---~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~~l~~~~~~ 164 (450)
T 2jdq_A 99 ----QTRIVIQAGAVPIFI---ELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLD-----CNILPPLLQLFSKQNRL 164 (450)
T ss_dssp ----HHHHHHHTTHHHHHH---HHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHHTTSCCCH
T ss_pred ----HHHHHHhCCCHHHHH---HHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHH-----CCCHHHHHHHhcCCCCH
Confidence 0001111 1122221 2222 34556655666666666653 2222222 1356667777664 577
Q ss_pred chhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhc
Q 003155 198 DIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRY 277 (843)
Q Consensus 198 ~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~ 277 (843)
++...+...+..++.... +... .... ..+++.+++.+..+ + + ..|.
T Consensus 165 ~v~~~a~~~L~~l~~~~~---------~~~~--------~~~~----~~~l~~L~~~l~~~------~-~------~v~~ 210 (450)
T 2jdq_A 165 TMTRNAVWALSNLCRGKS---------PPPE--------FAKV----SPCLNVLSWLLFVS------D-T------DVLA 210 (450)
T ss_dssp HHHHHHHHHHHHHHCCSS---------SCCC--------GGGT----GGGHHHHHHHTTCC------C-H------HHHH
T ss_pred HHHHHHHHHHHHHhCCCC---------CCCC--------HHHH----HHHHHHHHHHHccC------C-H------HHHH
Confidence 888888877766653210 0000 0011 12233333333211 1 1 1233
Q ss_pred cccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHH-----HHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCC
Q 003155 278 DLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLK-----ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS 352 (843)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~-----~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~ 352 (843)
+ +..++.+++.... .... .+.+.+.+.+. +.+|.-++.++.+++.++.+.+
T Consensus 211 ~-----------------a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 211 D-----------------ACWALSYLSDGPN--DKIQAVIDAGVCRRLVELLM-----HNDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp H-----------------HHHHHHHHTSSSH--HHHHHHHHTTTHHHHHHHTT-----CSCHHHHHHHHHHHHHHTTSCH
T ss_pred H-----------------HHHHHHHHHCCCc--HHHHHHHHcCcHHHHHHHHC-----CCchhHHHHHHHHHHHHhhCCh
Confidence 3 4455555443211 1111 12333434432 5789999999999999988643
Q ss_pred Cc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHHHHHHHhccCCCHHHHHHHHHH
Q 003155 353 VV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSEDTAAAAALA 424 (843)
Q Consensus 353 ~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~vl~~l~~~l~~~~~v~~~A~~a 424 (843)
.. +...++.+++.+.+ +++.+|..+++++|..+..-..+-+. ...++.++..+.. ...+++..|+++
T Consensus 267 ~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~ 341 (450)
T 2jdq_A 267 IQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWA 341 (450)
T ss_dssp HHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHH
Confidence 22 12456666666543 37899999999999987421110000 0134444444432 223499999999
Q ss_pred HHHHHHHhhhhhcCC-H-HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 425 FRHICDDCRKKLCGY-L-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 425 ~~~lc~~c~~~l~~~-~-~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
+.+++.........+ + ..++..+..++.. -+.+.+...+++++.++..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTV-----MDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHh
Confidence 999997632211111 1 1244444555542 1356777888888888764
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.67 E-value=0.094 Score=60.93 Aligned_cols=302 Identities=9% Similarity=0.057 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCC--CCcHHHHHHHHHHHHhhHHH
Q 003155 312 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKW 389 (843)
Q Consensus 312 ~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~ 389 (843)
..-.+.+.+.+-+. +.+-..+-.|+.+++.|+.. ++.+.+++.+.++ ..+|.||++++.++++....
T Consensus 104 ~~~l~in~l~kDL~-----~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 104 VHLLMTNCIKNDLN-----HSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHHHHHHHHHHHHS-----CSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33334555655552 34444566788888888731 2333333333221 24899999999999988763
Q ss_pred HhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHhhcccCCC------CC
Q 003155 390 FDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSL------KV 459 (843)
Q Consensus 390 l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~---~~l~~~~~~li~~~~~~~~~~~~~------~l 459 (843)
+|+ .++.+++.+...+.++ ..|+.+|..++..+|+... ..+.+.++.++..+.+....+... ..
T Consensus 173 ---~p~---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 173 ---VPE---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp ---CGG---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred ---ChH---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 565 5666666776777654 3599999999999986543 245567788888777764321000 11
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHH
Q 003155 460 SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD 539 (843)
Q Consensus 460 ~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 539 (843)
++.-+..+++.++.+...-|.. . . .+..-+.+++...... .........+++.+++.. .. .+ .
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~-~-~-------~~~~~L~~l~~~~~~~----~~~~~aV~~ea~~~i~~l-~~-~~--~ 309 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDS-S-E-------AMNDILAQVATNTETS----KNVGNAILYETVLTIMDI-KS-ES--G 309 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHH-H-H-------TTHHHHHHHHHTSCCS----STHHHHHHHHHHHHHHHS-CC-CH--H
T ss_pred CChHHHHHHHHHHHhCCCCHHH-H-H-------HHHHHHHHHHhccccc----cchHHHHHHHHHHHHHhc-CC-CH--H
Confidence 3556777888888876543221 1 1 1112222223211100 011122334555555542 22 22 1
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcc
Q 003155 540 AIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPS 619 (843)
Q Consensus 540 ~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~ 619 (843)
..+...+.+...+.. .+..+...+...+..+.......+.++.+.++..+. .+....=..+-.++...+...+
T Consensus 310 l~~~a~~~L~~~L~~--~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~-----d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 310 LRVLAINILGRFLLN--NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLK-----DLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp HHHHHHHHHHHHHTC--SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGG-----SSCHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHcc-----CCChhHHHHHHHHHHHHccccc
Confidence 222334444444432 355666666777776665544445555554443321 1222221122223333444444
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCC
Q 003155 620 CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 667 (843)
Q Consensus 620 ~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p 667 (843)
+...+.+++..+ . +.++|++.....-+.++..+++
T Consensus 383 v~~iv~eL~~~l--------~-----~~d~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 383 IRGMMKELLYFL--------D-----SCEPEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp THHHHHHHHHHH--------H-----HCCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHH--------H-----hCCHHHHHHHHHHHHHHHHHhC
Confidence 444433333221 1 1346777777777777776654
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.63 E-value=0.0086 Score=68.39 Aligned_cols=341 Identities=13% Similarity=0.125 Sum_probs=185.8
Q ss_pred HHHHHHhhhc--hhhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCCC---cchHHHHHHHHHHHhhhccCCCC
Q 003155 49 LSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSG 123 (843)
Q Consensus 49 l~~l~~~l~~--~~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~~---~~~~~A~~~l~eii~~~~~~~~~ 123 (843)
+..+...+++ ++.+..++.++...+.....-+...+.....++.+++.|.++ +++..|+.+|.++......
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~---- 164 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA---- 164 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH----
Confidence 4444445554 357888888888887632101111234567889999998754 6899999999998864321
Q ss_pred CccCcHhHH--HHHHHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhhH---HHHHHHcCCchHHHHHHHHHhhccCCCcc
Q 003155 124 GATVNMPLI--QVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVASHPEYD 198 (843)
Q Consensus 124 ~~~~~~~li--~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~~~~~ 198 (843)
....+ ...+|.+.. .+. ..+.+.....+..+..++.. +...+... ..++.++.+...++.+
T Consensus 165 ----~~~~~~~~g~i~~Lv~---lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~ 230 (530)
T 1wa5_B 165 ----QTKVVVDADAVPLFIQ---LLY--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-----NAMEPILGLFNSNKPS 230 (530)
T ss_dssp ----HHHHHHHTTCHHHHHH---HHH--HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHGGGSCCHH
T ss_pred ----HHHHHHHCCCHHHHHH---HHc--CCCHHHHHHHHHHHHHHhCCCccchHHHHHc-----CcHHHHHHHhccCCHH
Confidence 11111 011222222 222 24556666666666666642 33333321 3566777777777777
Q ss_pred hhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhcc
Q 003155 199 IASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYD 278 (843)
Q Consensus 199 vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~ 278 (843)
+...+...+..++..- . +... ..+...+++.+++.+..+ + ...|..
T Consensus 231 v~~~a~~~L~~L~~~~---~------~~~~------------~~~~~~~l~~L~~lL~~~------d-------~~v~~~ 276 (530)
T 1wa5_B 231 LIRTATWTLSNLCRGK---K------PQPD------------WSVVSQALPTLAKLIYSM------D-------TETLVD 276 (530)
T ss_dssp HHHHHHHHHHHHHCCS---S------SCCC------------HHHHGGGHHHHHHHTTCC------C-------HHHHHH
T ss_pred HHHHHHHHHHHHhCCC---C------CCCc------------HHHHHhHHHHHHHHHcCC------C-------HHHHHH
Confidence 7777776666555311 0 0000 111223334444433211 1 122333
Q ss_pred ccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHH-----HHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCC
Q 003155 279 LACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 353 (843)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~-----l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~ 353 (843)
+..++.+++..- +...+. +.+.|.+.+. +.+|.-.+.++.+++.++.+-+.
T Consensus 277 -----------------a~~~L~~L~~~~--~~~~~~~~~~~~v~~Lv~lL~-----~~~~~v~~~a~~~L~~l~~~~~~ 332 (530)
T 1wa5_B 277 -----------------ACWAISYLSDGP--QEAIQAVIDVRIPKRLVELLS-----HESTLVQTPALRAVGNIVTGNDL 332 (530)
T ss_dssp -----------------HHHHHHHHHSSC--HHHHHHHHHTTCHHHHHHGGG-----CSCHHHHHHHHHHHHHHTTSCHH
T ss_pred -----------------HHHHHHHHhCCC--HHHHHHHHhcCcHHHHHHHHC-----CCChhhHHHHHHHHHHHHcCCHH
Confidence 445555544321 111111 2334444442 56799999999999999875432
Q ss_pred c-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhC------CCCchhHHHHHHHHHhccCCCHHHHHHHH
Q 003155 354 V-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAA------SSDPSILASVLSILTSGMSTSEDTAAAAA 422 (843)
Q Consensus 354 ~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~------p~~~~~l~~vl~~l~~~l~~~~~v~~~A~ 422 (843)
. +...++.++..|.. .++.++..+++++|.++..-..+ .. .++.++..+.. .+ .+++..|+
T Consensus 333 ~~~~~~~~~~l~~L~~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~--~~-~~v~~~a~ 404 (530)
T 1wa5_B 333 QTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGNTEQIQAVIDAN---LIPPLVKLLEV--AE-YKTKKEAC 404 (530)
T ss_dssp HHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHHHHHHH--SC-HHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHHHHHhc--CC-HHHHHHHH
Confidence 2 12455666655543 26899999999999987421110 11 45555554432 22 34999999
Q ss_pred HHHHHHHHHhhh--hhcCCHH--HHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcC
Q 003155 423 LAFRHICDDCRK--KLCGYLD--GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 478 (843)
Q Consensus 423 ~a~~~lc~~c~~--~l~~~~~--~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~ 478 (843)
+++.+++..+.. ....++- .++..+..++.. -+.+.+..++.+++.++...
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-----ADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhh
Confidence 999999987543 2221111 133444445432 14567778888888887654
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00049 Score=70.23 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=125.6
Q ss_pred HHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCC-Cccc-cchHHHhhhccC-CC-CcHHHHHHHHHHHHhhHHHHh
Q 003155 316 LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS-VVEA-EVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFD 391 (843)
Q Consensus 316 l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~-~~~~-~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~ 391 (843)
+.+.+.+.+.+ +.+-.-+++++.+++.+++++. ..-. ++...+++.+.. +. .++.|+..+..++-.+.+-.
T Consensus 61 ~~~~L~~~l~~----D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~- 135 (249)
T 2qk1_A 61 LLGIYGHIIQK----DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY- 135 (249)
T ss_dssp HHHHHHHHHHH----CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-
Confidence 35555555521 5667778999999999999997 5655 666666655432 22 35888888888877766644
Q ss_pred hCCCCc-hhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhcCCH-HHHHHHHHHhhcccCCCCCChhhHH
Q 003155 392 AASSDP-SILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSL 465 (843)
Q Consensus 392 ~~p~~~-~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~---~~l~~~~-~~li~~~~~~~~~~~~~~l~~~~~~ 465 (843)
+|... .+++.+++.++.++.++ ..++..+...+.++++.++ ..+.+|+ +.++..+...+.. -..+.|.
T Consensus 136 -~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-----~~~~VR~ 209 (249)
T 2qk1_A 136 -DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-----TQPAIRT 209 (249)
T ss_dssp -CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-----SSHHHHH
T ss_pred -cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-----CCHHHHH
Confidence 22111 14889999999999764 2488999999999999887 4678899 8999998888852 2578899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHH
Q 003155 466 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 501 (843)
Q Consensus 466 ~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~ 501 (843)
..++++|.+...++.+...+++..+-..-...++..
T Consensus 210 aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~ 245 (249)
T 2qk1_A 210 IGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEET 245 (249)
T ss_dssp HHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999988877667777766544444444443
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.47 E-value=0.017 Score=63.94 Aligned_cols=309 Identities=11% Similarity=0.034 Sum_probs=164.8
Q ss_pred HHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHH--HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHH
Q 003155 90 VLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ--VIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 165 (843)
Q Consensus 90 l~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~--~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~ 165 (843)
++.+++.|. +++++..|+.++..+++.... + .....+. .++|.+.. .+. ..++.+.....+..+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~--~----~~~~~~~~~~~i~~L~~---~L~-~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPN--P----PIDEVISTPGVVARFVE---FLK-RKENCTLQFESAWVLTN 91 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSS--C----CHHHHHTSTTHHHHHHH---HHT-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--C----cHHHHHHcCCcHHHHHH---HHC-CCCCHHHHHHHHHHHHH
Confidence 344454554 557899999999998864321 1 1111221 12333322 222 22255665666777777
Q ss_pred Hhh---HHHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHH
Q 003155 166 MGD---SYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 242 (843)
Q Consensus 166 ~~e---~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 242 (843)
++. .....+.+ ...++.++++...++.++...++.....+...-. ..+.
T Consensus 92 l~~~~~~~~~~~~~-----~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-----------------------~~~~ 143 (450)
T 2jdq_A 92 IASGNSLQTRIVIQ-----AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-----------------------MCRD 143 (450)
T ss_dssp HHSSCHHHHHHHHH-----TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HhcCCHHHHHHHHh-----CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-----------------------HHHH
Confidence 664 22222222 2467888888888888888887766555543110 0011
Q ss_pred HH--HHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcCh---hHHHHHHH
Q 003155 243 AY--ESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG---DATLKILY 317 (843)
Q Consensus 243 ~~--~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~---~~~l~~l~ 317 (843)
.+ ..+++.+++.+..+++ ...|.. +..++..++..-++ ......+.
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~------------~~v~~~-----------------a~~~L~~l~~~~~~~~~~~~~~~~l 194 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNR------------LTMTRN-----------------AVWALSNLCRGKSPPPEFAKVSPCL 194 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCC------------HHHHHH-----------------HHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred HHHHCCCHHHHHHHhcCCCC------------HHHHHH-----------------HHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 11 1233334443321110 112333 44455554422100 01112233
Q ss_pred HHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhh
Q 003155 318 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA 392 (843)
Q Consensus 318 ~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~ 392 (843)
+.+.+.+. +.+..-++.++++++.+++..... ....++.++..+. ..++.++..+++++|..+.--..
T Consensus 195 ~~L~~~l~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 195 NVLSWLLF-----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHc-----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHHHHHHHHhhCChH
Confidence 34444442 456777889999999998764321 1356777777664 23689999999999987642110
Q ss_pred CCCCchhH-HHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhh---hc--CCHHHHHHHHHHhhcccCCCCCChhhHH
Q 003155 393 ASSDPSIL-ASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKK---LC--GYLDGLYNVYRTAVNGEGSLKVSAEDSL 465 (843)
Q Consensus 393 ~p~~~~~l-~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~---l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~ 465 (843)
..+ ..+ ..+++.+...+.++ ..++..|+.++.+++..+... +. ..++.+++.+. .+ +.+.|.
T Consensus 268 ~~~--~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~-----~~~v~~ 336 (450)
T 2jdq_A 268 QTQ--VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ----TA-----EFRTRK 336 (450)
T ss_dssp HHH--HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH----HS-----CHHHHH
T ss_pred HHH--HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----cC-----CHHHHH
Confidence 000 001 13555565666554 349999999999998644332 22 33444444333 21 356788
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 003155 466 HLVEALSMVITELPQVDA 483 (843)
Q Consensus 466 ~l~eaig~vi~~~p~~~~ 483 (843)
....+++.+.....++..
T Consensus 337 ~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQI 354 (450)
T ss_dssp HHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 888999998876444433
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.33 E-value=0.029 Score=64.98 Aligned_cols=210 Identities=12% Similarity=0.124 Sum_probs=112.8
Q ss_pred CCCcchhhHHHHHHHHhhccCCCcc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHH--HHHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSIL 407 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~-~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~--~vl~~l 407 (843)
+.+...+..++.+++.++ ..+- ...++.+...+. ..+|.||++++.++++... .+|+ .++ ..++.+
T Consensus 97 ~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~---~~p~---~~~~~~~~~~l 165 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHD---INAQ---MVEDQGFLDSL 165 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHH---SSCC---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHh---hChh---hcccccHHHHH
Confidence 455566677777777665 2211 122333444443 3489999999999998765 4676 555 578888
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHH
Q 003155 408 TSGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 485 (843)
Q Consensus 408 ~~~l~~~~-~v~~~A~~a~~~lc~~c~~~-l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~ 485 (843)
...+.+++ .|+..|..++..+|.+.... ..+.....+..+.+.+.. .+...+..+++.++.+... +++....
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-----~~~~~q~~il~~l~~l~~~-~~~~~~~ 239 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-----CTEWGQIFILDCLSNYNPK-DDREAQS 239 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHTSCCC-SHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-----CCchHHHHHHHHHHHhCCC-ChHHHHH
Confidence 88887653 59999999999998765433 334444434333333321 2355677777766544321 1122221
Q ss_pred HHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhcc-CCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 003155 486 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV-NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 564 (843)
Q Consensus 486 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~ 564 (843)
++. .+...++.. ...-....+.++..+.... ..++.......++.+.+..++. .+..+.-.
T Consensus 240 ----~l~----~l~~~l~~~-------~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---~d~~vr~~ 301 (591)
T 2vgl_B 240 ----ICE----RVTPRLSHA-------NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---GEPEVQYV 301 (591)
T ss_dssp ----HHH----HHTTCSCSS-------TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT---SCHHHHHH
T ss_pred ----HHH----HHHHHHcCC-------ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CCccHHHH
Confidence 222 222222111 0111122234444443322 1233344445566665554442 56777777
Q ss_pred HHHHHHHHHHh
Q 003155 565 LCRACKYAVRT 575 (843)
Q Consensus 565 ~~~~l~~~i~~ 575 (843)
+++.+..+...
T Consensus 302 aL~~l~~i~~~ 312 (591)
T 2vgl_B 302 ALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.29 E-value=0.059 Score=61.28 Aligned_cols=335 Identities=14% Similarity=0.138 Sum_probs=180.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASV 403 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~v 403 (843)
+.++.....++++++.++..-... ....++.++..|.+ ++++.++..++++++.++..-..+.. .+. ..+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~~~~~~--~~~~~g~ 161 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-EDFPQLQFEAAWALTNIASGTSENTK--VVIDHGA 161 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCHHHHH--HHHhCCc
Confidence 456778888899998886654311 23567777777754 33489999999999998763111110 011 135
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 404 LSILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 404 l~~l~~~l~~~-~~v~~~A~~a~~~lc~~---c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
++.|...+.++ ..++..|++++.+||.+ ++..+. ..++.++. .+.. .-+...+..+..+++.+...
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~----lL~~----~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA----QLNE----HTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHH----TCCT----TCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHH----HHhc----CCCHHHHHHHHHHHHHHHcC
Confidence 55666666543 34999999999999965 333443 24555543 3321 12456778888899988876
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchH-HHHHH-HHHHHHHHHHHhh
Q 003155 478 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV-ADAIQ-RLWPIFKAIFDIR 555 (843)
Q Consensus 478 ~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~-~~~~~l~~il~~~ 555 (843)
.|..... . ..+.+..+.+++.... .......+..|+.+... ++.. ..+.+ .+.|.+..++..
T Consensus 234 ~~~~~~~-~----~~~~l~~L~~lL~~~~-------~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~- 297 (528)
T 4b8j_A 234 KPQPSFE-Q----TRPALPALARLIHSND-------EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLH- 297 (528)
T ss_dssp SSCCCHH-H----HTTHHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred CCCCcHH-H----HHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcC-
Confidence 5432211 1 2344444555554321 11122234555555432 2221 11222 455666555543
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhhh-----hhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHH-
Q 003155 556 AWDMRTMESLCRACKYAVRTSKRFM-----GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE- 629 (843)
Q Consensus 556 ~~~~~i~e~~~~~l~~~i~~~~~~~-----~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~- 629 (843)
.+..+.+.++++++.+........ ...+|.++..+ .....+..-.-+...+..+... ..+....++.
T Consensus 298 -~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~A~~~L~nl~~~--~~~~~~~~~~~ 370 (528)
T 4b8j_A 298 -PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL----TQNLKKSIKKEACWTISNITAG--NKDQIQAVINA 370 (528)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH----HSCCCHHHHHHHHHHHHHHHTS--CHHHHHHHHHT
T ss_pred -CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH----cCCCcHHHHHHHHHHHHHHHCC--CHHHHHHHHHC
Confidence 357788899999988764322211 12234444433 2221333333333333333221 1122222221
Q ss_pred HHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhh-CCCc---ccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 003155 630 ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRY-CPQL---FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDI 705 (843)
Q Consensus 630 ~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~-~p~~---~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~l 705 (843)
.++.....++.. .+++++..-...+..+... .|.. +.....++.++ ..+...+......++..+..+
T Consensus 371 ~~i~~L~~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~----~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 371 GIIGPLVNLLQT-----AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC----DLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp TCHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH----HGGGCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH----HHHcCCCHHHHHHHHHHHHHH
Confidence 222333344431 3678888888887777766 2322 11223344443 346677888889999999998
Q ss_pred hcc
Q 003155 706 FDL 708 (843)
Q Consensus 706 i~~ 708 (843)
+..
T Consensus 442 ~~~ 444 (528)
T 4b8j_A 442 LKV 444 (528)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.24 E-value=0.014 Score=67.53 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=77.8
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
..+|-..|+ +.+++.+....+......++.+...+.... +|.++.+++|++|+|++++.. -+.++..+.+.
T Consensus 402 ~~~~v~~e~-i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~-------~~~~l~~l~~~ 472 (591)
T 2vgl_B 402 KVNYVVQEA-IVVIRDIFRKYPNKYESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDN-------ADELLESFLEG 472 (591)
T ss_dssp CCHHHHHHH-HHHHHHHHHHSCSSCCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTT-------HHHHHHHHSTT
T ss_pred cchHHHHHH-HHHHHHHHHHCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccC-------HHHHHHHHHHh
Confidence 345655555 557777776655544556666666654433 688999999999999987753 23556666654
Q ss_pred cC-CCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 411 MS-TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 411 l~-~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
+. .+..++..+..|+.|+...+.....+.+..++ ..... + ..+.+.|.+.++..+.+
T Consensus 473 ~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll---~~~~~--d--~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 473 FHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVL---SLATQ--D--SDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHH---HHHHT--T--CCCHHHHHHHHHHHTTT
T ss_pred hccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---HHhhh--c--CCChHHHHHHHHHHHHH
Confidence 43 35459999999999998765432212222222 22221 1 12356676666655433
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.21 E-value=0.019 Score=58.01 Aligned_cols=187 Identities=10% Similarity=-0.013 Sum_probs=127.3
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccC-CC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMS-TS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 448 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~-~~~l~~vl~~l~~~l~-~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~ 448 (843)
....|+.++..++...+- +|.. ...+..+++.+...+. ++ ..|+..|+.++..++...+..+.+|++.++..+.
T Consensus 28 ~w~~R~~a~~~L~~l~~~---~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTD---HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SHHHHHHHHHHHHHHHHH---CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc---CCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 678999999999887653 2220 0134677888877773 43 3489999999999999999989999999999988
Q ss_pred HhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhh
Q 003155 449 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 528 (843)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 528 (843)
..+.. -....|....+++..++...+.+ .++. .+...+.... .+-....++.|+.++
T Consensus 105 ~~l~d-----~~~~vr~~a~~aL~~~~~~~~~~-------~ll~----~l~~~l~~~~-------~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 105 EKFKE-----KKPNVVTALREAIDAIYASTSLE-------AQQE----SIVESLSNKN-------PSVKSETALFIARAL 161 (242)
T ss_dssp HGGGC-----CCHHHHHHHHHHHHHHHTTSCHH-------HHHH----HHHHHTTCSC-------HHHHHHHHHHHHHHH
T ss_pred HHHcC-----CCHHHHHHHHHHHHHHHHcCCHH-------HHHH----HHHHHHcCCC-------hHHHHHHHHHHHHHH
Confidence 88752 14678888999999988876532 2222 2333333211 111223356666665
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhh-hhhhHHH
Q 003155 529 RYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGA 586 (843)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~-~~p~l~~ 586 (843)
...+.......++..++|.+...+. ..+.++++.+..++..+.+..|.. +.|+++.
T Consensus 162 ~~~~~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 162 TRTQPTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHcCCCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 5433211345677888898888774 246789999999999998888765 6666654
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.18 E-value=0.13 Score=58.52 Aligned_cols=333 Identities=14% Similarity=0.129 Sum_probs=176.2
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhC------CCCch
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAA------SSDPS 398 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~------p~~~~ 398 (843)
+.++.....++.+++.+...-... ....++.++..|.+ ++++.++..++++++.++..-..+ ..
T Consensus 98 s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g--- 173 (530)
T 1wa5_B 98 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQTKVVVDAD--- 173 (530)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC---
Confidence 356777888888888886542211 13567777776653 237899999999999876521111 11
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHH
Q 003155 399 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 473 (843)
Q Consensus 399 ~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc~~---c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~ 473 (843)
.++.++..+.. .+ .+++..|++++.++|.+ ++..+. +.++.++. ++.. -+.+.+.....+++.
T Consensus 174 ~i~~Lv~lL~~--~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~----ll~~-----~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 174 AVPLFIQLLYT--GS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG----LFNS-----NKPSLIRTATWTLSN 241 (530)
T ss_dssp CHHHHHHHHHH--CC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH----GGGS-----CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC--CC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHH----Hhcc-----CCHHHHHHHHHHHHH
Confidence 45555555533 23 34999999999999954 444333 34555554 3331 235677888999999
Q ss_pred HHhcC-CHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHH-HHHHHHHHH
Q 003155 474 VITEL-PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAI 551 (843)
Q Consensus 474 vi~~~-p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~i 551 (843)
+...- |... ... ....+..+..++.... ..-....+..|+.+... .++....+++ .+.|.+..+
T Consensus 242 L~~~~~~~~~-~~~----~~~~l~~L~~lL~~~d-------~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~l 307 (530)
T 1wa5_B 242 LCRGKKPQPD-WSV----VSQALPTLAKLIYSMD-------TETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVEL 307 (530)
T ss_dssp HHCCSSSCCC-HHH----HGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHG
T ss_pred HhCCCCCCCc-HHH----HHhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHH
Confidence 98654 2211 111 2333444444443221 11122234556655532 1111222222 455555555
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHH-
Q 003155 552 FDIRAWDMRTMESLCRACKYAVRTSKRFMGITI-GAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE- 629 (843)
Q Consensus 552 l~~~~~~~~i~e~~~~~l~~~i~~~~~~~~p~l-~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~- 629 (843)
+. ..+..+.+.+++++..+..........++ ..+++.++..+.. +....-.-+...+..+... ..+....++.
T Consensus 308 L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~~--~~~~~~~~~~~ 382 (530)
T 1wa5_B 308 LS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAG--NTEQIQAVIDA 382 (530)
T ss_dssp GG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS--CHHHHHHHHHT
T ss_pred HC--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHC
Confidence 53 24677888999998887533222111111 1222333333332 2333333444444444432 1122222221
Q ss_pred HHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhC-C--C---cccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHH
Q 003155 630 ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC-P--Q---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLS 703 (843)
Q Consensus 630 ~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~-p--~---~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~ 703 (843)
.++.....++. ..+++++......+..+.... | . .+.....++.++. .+...++.....++..+.
T Consensus 383 ~~l~~L~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~----ll~~~~~~v~~~al~aL~ 453 (530)
T 1wa5_B 383 NLIPPLVKLLE-----VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD----LLEIADNRIIEVTLDALE 453 (530)
T ss_dssp TCHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH----HTTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHH----HHhCCCHHHHHHHHHHHH
Confidence 12223333443 246788888887777777653 2 1 1122233444444 356667778888888888
Q ss_pred Hhhc
Q 003155 704 DIFD 707 (843)
Q Consensus 704 ~li~ 707 (843)
.++.
T Consensus 454 ~l~~ 457 (530)
T 1wa5_B 454 NILK 457 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8885
No 38
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.12 E-value=0.063 Score=66.75 Aligned_cols=318 Identities=10% Similarity=0.092 Sum_probs=166.6
Q ss_pred CcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC--C---C-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Q 003155 371 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS--T---S-EDTAAAAALAFRHICDDCRKKLCGYLDGLY 444 (843)
Q Consensus 371 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~--~---~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li 444 (843)
.+.+-+.++++.+|+.++-+....+ ..+++.+++++..... . + ..++..+++++.++++-.+.+ ..+++.++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 3578899999999988754322100 1368888888865221 1 1 124556888888888665543 24566666
Q ss_pred HHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHH----HHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHH
Q 003155 445 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK----KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 520 (843)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~----~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~ 520 (843)
+.+...+.. -....+.....++..++...+.. .. ..+..++.++++.+.+++.... ..+....
T Consensus 543 ~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~~~~~ 609 (1049)
T 3m1i_C 543 LKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQVHTF 609 (1049)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHHHHHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHHHHHH
Confidence 666555531 13566777777777777643221 10 0001445666666666665421 1233444
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHHHHHH----hhc------CCHHHH---HHHHHHHHHHHHhhhhhhhhhHHHH
Q 003155 521 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD----IRA------WDMRTM---ESLCRACKYAVRTSKRFMGITIGAI 587 (843)
Q Consensus 521 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~----~~~------~~~~i~---e~~~~~l~~~i~~~~~~~~p~l~~l 587 (843)
++.++.++...+.++...++++.+++.+.+-+. ... .+.+.. -.++.++..+.+.+|..+.|+++.+
T Consensus 610 ~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i 689 (1049)
T 3m1i_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHI 689 (1049)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 688888887765333455666666665433222 111 122221 2446667777788888888877766
Q ss_pred HHHHHHHHhhc-----------C-----Cc------hHhHHHHHHHHHhCCCcc-hhHHHHHHHHHHHHHHHHhhccccc
Q 003155 588 LEEIQGLYQQH-----------Q-----QP------CFLYLSSEVIKIFGSDPS-CASYLHNLIEALFKRTTCLLTSIEE 644 (843)
Q Consensus 588 ~~~l~~~~~~~-----------~-----~~------~~L~l~~~li~~fg~~~~-~~~~l~~~l~~l~~~~~~~l~~~~~ 644 (843)
...++..|+.. + ++ .+...+..++..|.++.. ....+...+..++...+..++. .
T Consensus 690 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~-~- 767 (1049)
T 3m1i_C 690 YYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-N- 767 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-C-
Confidence 65444444321 0 00 011111122222322111 1222222233333333333321 0
Q ss_pred CCcCCchHHHHHHHHHHHHhhCCCcccC--cCCcHHHHHHHHHhcc---CCChhHHHHHHHHHHHhhc
Q 003155 645 FTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFD 707 (843)
Q Consensus 645 ~~~~pD~~~~~f~l~~~~~~~~p~~~~~--s~~l~~i~~~~~~~l~---~~e~~~~~s~~~fl~~li~ 707 (843)
.....| ..++.++..++.+.+..+-+ ...+..++.+....+. -.+++...+.+.|+..++.
T Consensus 768 ~~~~~~--~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~ 833 (1049)
T 3m1i_C 768 VPDARD--AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1049)
T ss_dssp CGGGCC--THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred Cccccc--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHH
Confidence 001011 45778888888766543322 1234444455443343 3578889999999999886
No 39
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.09 E-value=0.033 Score=68.38 Aligned_cols=309 Identities=12% Similarity=0.131 Sum_probs=172.7
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-----CH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 445 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~-----~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~ 445 (843)
+-+.+.++++++|+.++=..... ...+++.+++++++.+.+ ++ .++..+++++-+.|+=.+.+ ..+++.+++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 57999999999999875221100 014889999988875542 22 25567788888887755432 135677777
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHH--------HHhhhHHHHHHHHHHhcCCccccccCchhh
Q 003155 446 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--------EMLCLPVVTPLQEIINQGPEILQKKHPRDL 517 (843)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l--------~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~ 517 (843)
.+...+.. -....+.....|+..+.+.- ...+ ..++.++++.+.++.... ..+..
T Consensus 544 ~L~~~l~~-----~~~~v~~~A~~al~~l~~~c-----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~~~ 606 (1023)
T 4hat_C 544 KLFEFMHE-----THEGVQDMACDTFIKIVQKC-----KYHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQQV 606 (1023)
T ss_dssp HHHHHTTC-----SCHHHHHHHHHHHHHHHHHH-----THHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHHHH
T ss_pred HHHHHhhc-----CCHHHHHHHHHHHHHHHHHH-----HHHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHHHH
Confidence 66655421 01334555556666655532 2122 124555556666666522 12334
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhc----------CCHHHH---HHHHHHHHHHHHhhhhhhhhhH
Q 003155 518 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTM---ESLCRACKYAVRTSKRFMGITI 584 (843)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~----------~~~~i~---e~~~~~l~~~i~~~~~~~~p~l 584 (843)
....+.++.+++.....+.-..+++.+++.+....+... .|++.. -.++++.......+|..+.|++
T Consensus 607 ~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~ 686 (1023)
T 4hat_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL 686 (1023)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 455789999998865422233456666665444333321 123222 3455566666677888888888
Q ss_pred HHHHHHHHHHHhhcC----------------Cch----------HhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHh
Q 003155 585 GAILEEIQGLYQQHQ----------------QPC----------FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCL 638 (843)
Q Consensus 585 ~~l~~~l~~~~~~~~----------------~~~----------~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~ 638 (843)
.++...+.+.|+... .+. .|.++...+. +.++......+++.+++..++.-
T Consensus 687 ~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~---~~~~~~~~~~~~~~~l~~~vl~d 763 (1023)
T 4hat_C 687 GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYIS---KARNLDDVVKVLVEPLLNAVLED 763 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHH---HCSCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHhHHHHHHHHHHH
Confidence 777777666655320 111 1122222222 22223334444555555555433
Q ss_pred hcccccCCcCCchHH-HHHHHHHHHHhhCCCcccC--cCCcHHHHHHHHHhcc---CCChhHHHHHHHHHHHhhc
Q 003155 639 LTSIEEFTSRPDVAD-DCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFD 707 (843)
Q Consensus 639 l~~~~~~~~~pD~~~-~~f~l~~~~~~~~p~~~~~--s~~l~~i~~~~~~~l~---~~e~~~~~s~~~fl~~li~ 707 (843)
+. ...|+.++ +++.+++.++++....+.+ ...++.++.+.+.=++ ..+|+....-++++..+..
T Consensus 764 Y~-----~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~ 833 (1023)
T 4hat_C 764 YM-----NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1023)
T ss_dssp HH-----HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred HH-----hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 32 23454443 4677778888776654433 2356677766655454 3677777888888888775
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.82 E-value=0.68 Score=53.59 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHh
Q 003155 313 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD 391 (843)
Q Consensus 313 l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~ 391 (843)
.-.+.+.+++-+. +.+-..+-.||.+++.|.. ++ -...++.+...+.+-..+|.||++++.++.+..+
T Consensus 109 ~~L~iN~l~kDl~-----~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~--- 177 (621)
T 2vgl_A 109 IRLINNAIKNDLA-----SRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR--- 177 (621)
T ss_dssp HHHHHHHHHHHHH-----SCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcC-----CCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---
Confidence 3334555655543 3444456688888888754 11 1123333444442223489999999999998876
Q ss_pred hCCCCchhHH--HHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCC--CC-----C-C
Q 003155 392 AASSDPSILA--SVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS--LK-----V-S 460 (843)
Q Consensus 392 ~~p~~~~~l~--~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~--~~-----l-~ 460 (843)
.+|+ .++ ..++.+.+.+.++ ..|..+|..++..+|.+....+.++++.+++.+.+++..++. .. . +
T Consensus 178 ~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 178 TSPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp HCGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred hChh---hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 3454 333 4555555556543 249999999999999988777778888888888777643101 00 0 2
Q ss_pred hhhHHHHHHHHHHHH
Q 003155 461 AEDSLHLVEALSMVI 475 (843)
Q Consensus 461 ~~~~~~l~eaig~vi 475 (843)
+--+..+++.++...
T Consensus 255 ~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHHHHHHHGGGSS
T ss_pred chHHHHHHHHHHHhC
Confidence 456777777777654
No 41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.73 E-value=0.37 Score=58.95 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003155 412 STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 491 (843)
Q Consensus 412 ~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~ 491 (843)
.+...++.+++.+|+++..-.+..+.|+++.++..+.+.. +..+....+.-+|.++.....+ ..+.+..++
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~--------~~~e~~~fL~l~~qli~~f~~~-~~~~l~~ll 782 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSI--------DMNELVDVLSFISQLIHIYKDN-MMEITNRML 782 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHC--------CTTTHHHHHHHHHHHHHHTTTT-SHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3334499999999999999888999999999999887543 2345666777888888877555 888999999
Q ss_pred hHHHHHHHHHHhcCCccccccCchh---hHH-HHHHHHHhhhc-cCCcchHHHH--HHHHHHHHHHHHHhhc--CCHHHH
Q 003155 492 LPVVTPLQEIINQGPEILQKKHPRD---LTV-HIDRFAYIFRY-VNHPEAVADA--IQRLWPIFKAIFDIRA--WDMRTM 562 (843)
Q Consensus 492 ~p~~~~l~~~~~~~~~~~~~~~~~~---~~~-~l~~l~~~~~~-~~~~~~~~~~--~~~~~~~l~~il~~~~--~~~~i~ 562 (843)
.|+++++-+.+++...+. ...++ +.. .+..+..++.. +. ..+..- -..+-+++..++.--. .|....
T Consensus 783 ~~l~~~if~~l~~~~~~t--d~~r~~~~l~r~~~~fl~~i~~~~~~--~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~ 858 (980)
T 3ibv_A 783 PTLLMRIFSSLSAAPQGT--DDAVKQNDLRKSYISFILQLLNKGFG--SILFTEENQVYFDPLINSILHFANLVGEPATQ 858 (980)
T ss_dssp HHHHHHHHHHTTC----C--CHHHHHHHHHHHHHHHHHHHHHTTCT--GGGGSHHHHTTHHHHHHHHHHHC-----CHHH
T ss_pred HHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHHHHHHHHHhCCch--hhhcCCcchHHHHHHHHHHHHHhccCCChHHH
Confidence 999999999988654321 11121 111 23445555442 11 111100 0112223444442111 345566
Q ss_pred HHHHHHHHHHHHhhh
Q 003155 563 ESLCRACKYAVRTSK 577 (843)
Q Consensus 563 e~~~~~l~~~i~~~~ 577 (843)
..++.++.+++...|
T Consensus 859 K~a~~~l~~~v~~~~ 873 (980)
T 3ibv_A 859 KSSIALVSKMVSLWG 873 (980)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHC
Confidence 677888888887753
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.71 E-value=0.27 Score=55.80 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=76.4
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 404 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~vl 404 (843)
+.++.-.+.++.+++.++.+-+.. +...++.++..+.+ .++.++..++++++..+..-..+.. ... ..++
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~--~v~~~g~i 379 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQ--QVVNHGLV 379 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHH--HHHhcCcH
Confidence 567778889999999998653322 12344555554432 3689999999999988653221110 000 1233
Q ss_pred HHHHhccCC-CHHHHHHHHHHHHHHHHHhhhh----hc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHh
Q 003155 405 SILTSGMST-SEDTAAAAALAFRHICDDCRKK----LC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 405 ~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~~~----l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~ 476 (843)
+.+...+.+ ..+++..|++|+.+++..+... |+ +.++.|+ +++.. -+.+.+..+.+++..++.
T Consensus 380 ~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~----~LL~~-----~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM----NLLSA-----KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH----HGGGC-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH----HHhcC-----CCHHHHHHHHHHHHHHHH
Confidence 344443433 2349999999999999875432 22 2344443 34432 124455556666666554
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.51 E-value=0.36 Score=54.47 Aligned_cols=335 Identities=14% Similarity=0.175 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcccccchhHHHHHhhcCC---CcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHH-H
Q 003155 60 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS---EILSEASVNVISELIHYSAAGSSGGATVNMPLIQV-I 135 (843)
Q Consensus 60 ~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll~~~~~~L~~---~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~-l 135 (843)
+.+..+...++.-++....-|.+.+.+...++.+.++|.. ++++..|+.+|.++.+.... ....++.. .
T Consensus 72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e-------~~~~vv~~Ga 144 (510)
T 3ul1_B 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-------QTKAVVDGGA 144 (510)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHHCCC
Confidence 5777788888777764322333455677889999999963 47888999999998753321 11111110 1
Q ss_pred HHHHHhhHHHHhhccCCHHHHHHHHHHHHHHhh---HHHHHHHcCCchHHHHHHHHHhhccCCCcchhhh-hH--HHHHH
Q 003155 136 VPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD---SYVELIATGSDESMLIVHALLEVASHPEYDIASM-TF--NFWHS 209 (843)
Q Consensus 136 ~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~e---~~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~-~~--~FW~~ 209 (843)
+|.++ ..+. ..+.+..+.-+..+..++. .+...+.+. ..++.++.+...++.+.... .. -.|.
T Consensus 145 Ip~Lv---~lL~--s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-----G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~- 213 (510)
T 3ul1_B 145 IPAFI---SLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKH-----GAIDPLLALLAVPDLSTLACGYLRNLTWT- 213 (510)
T ss_dssp HHHHH---HHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTCSSCGGGSCHHHHHHHHHH-
T ss_pred HHHHH---HHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-----CChHHHHHHHHhccchhhhHHHHHHHHHH-
Confidence 22222 2222 4455665555555665553 233333331 23555666666554332111 11 1111
Q ss_pred HHHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchh
Q 003155 210 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTE 289 (843)
Q Consensus 210 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~ 289 (843)
+........ +.+. .. ....+++.+.+-+..++ .+ -+.+
T Consensus 214 L~nl~~~~~------~~~~--------~~----~~~~~lp~L~~LL~~~~------~~-------v~~~----------- 251 (510)
T 3ul1_B 214 LSNLCRNKN------PAPP--------LD----AVEQILPTLVRLLHHND------PE-------VLAD----------- 251 (510)
T ss_dssp HHHHHCCCS------SCCC--------HH----HHHHHHHHHHHHTTCSC------HH-------HHHH-----------
T ss_pred HHHHhhccc------chhH--------HH----HHHhHHHHHHHHHhcCC------HH-------HHHH-----------
Confidence 111111100 0000 01 11233444444332221 11 1222
Q ss_pred hhhhchhhHHHHHHhhhcChhHHHHH-----HHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccch-HHHh
Q 003155 290 SVMLIAVADVLIDAASVLGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVM-PQVM 363 (843)
Q Consensus 290 ~~~~~~~~d~l~~~~~vl~~~~~l~~-----l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l-~~l~ 363 (843)
+..++.+++. +++...+. +.+.|.+.+. +.+..-.+.++.+++.++.+-+......+ ...+
T Consensus 252 ------A~~aL~~L~~--~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l 318 (510)
T 3ul1_B 252 ------SCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLG-----ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318 (510)
T ss_dssp ------HHHHHHHHTS--SCHHHHHHHHTTTCHHHHHHHHT-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred ------HHHHHHHHhh--chhhhHHHHHhcccchhhhhhhc-----CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence 3334444332 11111111 2233444442 46677888999999988765322111111 1123
Q ss_pred hhccCC--CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhh----h
Q 003155 364 ALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKK----L 436 (843)
Q Consensus 364 ~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~~~----l 436 (843)
+.|.++ ..++.++..++++++..+..-..+... -.-..+++.+...+.. ..+++..|++|+.+++..+... |
T Consensus 319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~-v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ-VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH-HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 333333 236899999999999876422111100 0001233344444433 2359999999999999876532 2
Q ss_pred c--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 437 C--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 437 ~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
+ +.++.|+ +++.. -+.+.+..+.+++..++..
T Consensus 398 ~~~g~i~~L~----~LL~~-----~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 398 VHCGIIEPLM----NLLSA-----KDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHTTCHHHHH----HGGGC-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHH----HHhcC-----CCHHHHHHHHHHHHHHHHH
Confidence 2 2344443 34432 1345566666776666643
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.40 E-value=0.71 Score=52.31 Aligned_cols=390 Identities=12% Similarity=0.112 Sum_probs=191.4
Q ss_pred hHHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHH-HHHHHHHhhHHHHhhccCCHHHHHHHHHHHHH
Q 003155 89 LVLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 165 (843)
Q Consensus 89 ll~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~-~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~ 165 (843)
.++.+.+.+. |++....|+.++..+++.... | ....+++ -++|.++. .+ ...++.+.-...+..+..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~--~----~i~~ii~~G~ip~Lv~---lL-~~~~~~~~q~~Aa~aL~n 146 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQ--P----PIDNIIRAGLIPKFVS---FL-GKTDCSPIQFESAWALTN 146 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSC--C----CHHHHHHTTHHHHHHH---HH-TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC--c----hHHHHHHCCCHHHHHH---HH-cCCCCHHHHHHHHHHHHH
Confidence 4556666665 456778899999888865432 1 1111221 12233222 22 123345554455566666
Q ss_pred HhhH---HHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHH
Q 003155 166 MGDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 242 (843)
Q Consensus 166 ~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 242 (843)
++.. +...+.+. ..++.++.+...++.++.+.+..-...++..- ..++.
T Consensus 147 ia~~~~~~~~~vv~~-----Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-----------------------~~~r~ 198 (529)
T 3tpo_A 147 IASGTSEQTKAVVDG-----GAIPAFISLLASPHAHISEQAVWALGNIAGAG-----------------------SAFRD 198 (529)
T ss_dssp HHTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-----------------------HHHHH
T ss_pred HHcCCHHHHHHHHHC-----CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-----------------------HHHHH
Confidence 6532 23333332 36788888888999998888776555443210 00111
Q ss_pred HHH--HHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhcC---hhHHHHHHH
Q 003155 243 AYE--SLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG---GDATLKILY 317 (843)
Q Consensus 243 ~~~--~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~---~~~~l~~l~ 317 (843)
.+. ..++.++..+..++. .... ....+. +..++..++..-. .-.....+.
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~-~~~~-------~~~~~~-----------------a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDL-STLA-------CGYLRN-----------------LTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCG-GGSC-------HHHHHH-----------------HHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccch-hHhH-------HHHHHH-----------------HHHHHHHHHhcccchhhHHHHhhHH
Confidence 111 123344444443321 1000 011112 3334444432111 011223344
Q ss_pred HHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhh
Q 003155 318 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA 392 (843)
Q Consensus 318 ~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~ 392 (843)
+.|...+. +.+-.-.+.++++++.++++-... ....++.++..+.+ .++.++..++.++|..+..
T Consensus 254 p~L~~LL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~--- 323 (529)
T 3tpo_A 254 PTLVRLLH-----HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTG--- 323 (529)
T ss_dssp HHHHHHTT-----SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHcc---
Confidence 45555542 344456778899999998764322 23566777776653 3678999999999987531
Q ss_pred CCCCch--hHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhh---hhc--CCHHHHHHHHHHhhcccCCCCCChhhH
Q 003155 393 ASSDPS--ILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDS 464 (843)
Q Consensus 393 ~p~~~~--~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~---~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~ 464 (843)
++.... .-..+++.|...+.++ .+++..|++++.++|..... .+. ..++.++ ..+.. -+.+.+
T Consensus 324 ~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv----~lL~~-----~~~~v~ 394 (529)
T 3tpo_A 324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV----GVLSK-----ADFKTQ 394 (529)
T ss_dssp CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH----HHHHS-----SCHHHH
T ss_pred chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH----HHhcC-----CCHHHH
Confidence 110000 0011223344444443 34899999999999854332 222 2233343 34432 135678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccC---CcchHHHHH
Q 003155 465 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAI 541 (843)
Q Consensus 465 ~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~ 541 (843)
.....+++.++..-.++......+. ..+..|-+++.... .+-+...++.|..+++... ..+.+...+
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~---g~i~~L~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 464 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHC---GIIEPLMNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMI 464 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHT---TCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHC---cCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccChHHHHHHH
Confidence 8888888888876544443322221 22333344443221 1223334666666665432 222222223
Q ss_pred HH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 003155 542 QR--LWPIFKAIFDIRAWDMRTMESLCRACKYA 572 (843)
Q Consensus 542 ~~--~~~~l~~il~~~~~~~~i~e~~~~~l~~~ 572 (843)
++ .+..++.+. ...+.+|.+++..++.+-
T Consensus 465 ee~ggl~~ie~Lq--~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 465 EECGGLDKIEALQ--RHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTCHHHHTGGG--GCSSHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHH--cCCCHHHHHHHHHHHHHH
Confidence 22 122222221 224667777766665543
No 45
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.91 E-value=4.9 Score=49.23 Aligned_cols=318 Identities=12% Similarity=0.144 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC--H--H--HHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS--E--D--TAAAAALAFRHICDDCRKKLCGYLDGLYN 445 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~--~--~--v~~~A~~a~~~lc~~c~~~l~~~~~~li~ 445 (843)
+-..+.+.||.+|..+.=+... ...++++.++++|++-..++ + + ++...++.+.+.++=.+.+ ..++..+++
T Consensus 492 sW~~lea~~~aigaIag~~~~~-~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEE-DEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHH-HHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcc-cccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 5788999999999987532210 01148999999998655433 1 1 2333334444443332222 135566666
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHH---HHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHH
Q 003155 446 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA---KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 522 (843)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~---~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 522 (843)
.+...... -....+.....+...+.+.-+..-. ......++.++++.+.++...- ..+......+
T Consensus 570 ~L~~~m~~-----~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-------~~~~~~~lye 637 (1073)
T 3gjx_A 570 KLFEFMHE-----THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-------QPQQVHTFYE 637 (1073)
T ss_dssp HHHHHTTC-----CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-------CHHHHHHHHH
T ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-------CHHHHHHHHH
Confidence 55554431 1133455555666666553211100 0001123444455555554432 2334455578
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhc----------CCHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHH
Q 003155 523 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTMESLCRACK---YAVRTSKRFMGITIGAILE 589 (843)
Q Consensus 523 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~----------~~~~i~e~~~~~l~---~~i~~~~~~~~p~l~~l~~ 589 (843)
.++.+++.......-..+++.+|+...+-..... .|++.+..+..+++ .....+|..+.|++.++..
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~ 717 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 717 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHH
Confidence 8999988765422234456666655443332221 24544455544444 3345577777777777766
Q ss_pred HHHHHHhhc----------------CCc--hHhHHHH----HHHHH-hCCCcchhHHHHHHHHHHHHHHHHhhcccccCC
Q 003155 590 EIQGLYQQH----------------QQP--CFLYLSS----EVIKI-FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT 646 (843)
Q Consensus 590 ~l~~~~~~~----------------~~~--~~L~l~~----~li~~-fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~ 646 (843)
.+.+.|+.. +.+ -.+..+. .++.. .++.++......+++.+++..++.-.+ +
T Consensus 718 ~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~-----~ 792 (1073)
T 3gjx_A 718 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQ-----R 792 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHh-----c
Confidence 666555431 111 1122222 12222 233333444455555565555543332 2
Q ss_pred cCCchHH-HHHHHHHHHHhhCCCcccC--cCCcHHHHHHHHHhcc---CCChhHHHHHHHHHHHhhcc
Q 003155 647 SRPDVAD-DCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDL 708 (843)
Q Consensus 647 ~~pD~~~-~~f~l~~~~~~~~p~~~~~--s~~l~~i~~~~~~~l~---~~e~~~~~s~~~fl~~li~~ 708 (843)
..|+.++ +++.+++.++++....+.+ ...++.+|++.+.=++ ..+|+....-++++..+...
T Consensus 793 ~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~ 860 (1073)
T 3gjx_A 793 NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSH 860 (1073)
T ss_dssp SCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHH
Confidence 3344433 3567777777765554433 2356777777765554 46777777778888877763
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.75 E-value=1.4 Score=49.49 Aligned_cols=314 Identities=11% Similarity=0.163 Sum_probs=151.8
Q ss_pred cchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHHHHHhccCCC-HHHHHHHHHHHHHHHHH---
Q 003155 357 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGMSTS-EDTAAAAALAFRHICDD--- 431 (843)
Q Consensus 357 ~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~--- 431 (843)
..+|.+++.|.+ .+++.++..++|+++..+.--..+.. ... ..+++.|...|..+ .+++..|++|+.+|+.+
T Consensus 100 G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~~--~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 100 GLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTK--AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp THHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 457777777754 34789999999999987642111110 011 13556666667654 35999999999999854
Q ss_pred hhhhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccc
Q 003155 432 CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 509 (843)
Q Consensus 432 c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~ 509 (843)
++..+. .-++.++..+ ...+...........+..+++.+...-.+.........+ +..+.+++....
T Consensus 177 ~r~~v~~~G~i~~Ll~lL----~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~----lp~L~~LL~~~~--- 245 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALL----AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI----LPTLVRLLHHND--- 245 (510)
T ss_dssp HHHHHHHTTCHHHHHHHT----CSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHH----HHHHHHHTTCSC---
T ss_pred HHHHHHHcCChHHHHHHH----HhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhH----HHHHHHHHhcCC---
Confidence 454443 3455555433 221111122333445566666666543221111112222 222333443221
Q ss_pred cccCchhhHHHHHHHHHhhhccCCcchHHH-HH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhhh-----h
Q 003155 510 QKKHPRDLTVHIDRFAYIFRYVNHPEAVAD-AI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG-----I 582 (843)
Q Consensus 510 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~-~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~~-----p 582 (843)
..........|+.+... ++.... +. ..+.|.+..++.. .+..+...++++++.+......... .
T Consensus 246 ----~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g 316 (510)
T 3ul1_B 246 ----PEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316 (510)
T ss_dssp ----HHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHhhc---hhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcCCHHHHHHHhhcc
Confidence 11122224445554432 111111 11 2345555555542 4677888888888876432111110 1
Q ss_pred hHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHHHhhcccccCCcCCchHHHHHHHHHH
Q 003155 583 TIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-ALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 661 (843)
Q Consensus 583 ~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~-~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~ 661 (843)
.++.++..+ ..+....-.-+.+.+....... .+....++. .++.....++. ..+++++..-...+..
T Consensus 317 ~l~~L~~LL-----~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~-----~~~~~v~~~Aa~aL~N 384 (510)
T 3ul1_B 317 ALAVFPSLL-----TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLS-----KADFKTQKEAAWAITN 384 (510)
T ss_dssp GGGGCC-CT-----TCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHHH
T ss_pred chHHHHHHh-----cCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 112222111 1223333333344444433321 111122221 12222333343 2456777766655555
Q ss_pred HHhhCC-C---cccCcCCcHHHHHHHHHhccCCChhHHHHHHHHHHHhhccc
Q 003155 662 CIRYCP-Q---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLA 709 (843)
Q Consensus 662 ~~~~~p-~---~~~~s~~l~~i~~~~~~~l~~~e~~~~~s~~~fl~~li~~~ 709 (843)
+..... . .+.....++.++++ +...++.....++..+..++...
T Consensus 385 l~~~~~~~~~~~L~~~g~i~~L~~L----L~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 385 YTSGGTVEQIVYLVHCGIIEPLMNL----LSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHCCHHHHHHHHHTTCHHHHHHG----GGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHCCCHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHh
Confidence 555432 1 12233445555554 67788888999999998888643
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.28 E-value=6.7 Score=46.56 Aligned_cols=115 Identities=7% Similarity=0.027 Sum_probs=69.6
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCc----h-hH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP----S-IL 400 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~----~-~l 400 (843)
..+|.-++.++++++.++..-... +...++.++..+..-+....++..+++++|..+. .+++.. . .-
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~---~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS---RHQDAEMAQNAVRL 486 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS---SSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHH
Confidence 578999999999999998763221 1345667777665322235899999999998753 122200 0 00
Q ss_pred HHHHHHHHhccCCC--HHHHHHHHHHHHHHHH--Hhhhhhc--CCHHHHHHHHH
Q 003155 401 ASVLSILTSGMSTS--EDTAAAAALAFRHICD--DCRKKLC--GYLDGLYNVYR 448 (843)
Q Consensus 401 ~~vl~~l~~~l~~~--~~v~~~A~~a~~~lc~--~c~~~l~--~~~~~li~~~~ 448 (843)
...++.|.+.+.++ .+++..|+.++.+++. ..+..+. ..++.|++.+.
T Consensus 487 ~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHH
Confidence 12344555555543 2499999999999983 2222222 23455555554
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.02 E-value=0.86 Score=45.27 Aligned_cols=219 Identities=12% Similarity=0.098 Sum_probs=122.8
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH--HHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL--ASV 403 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~~v 403 (843)
+.+....+.++++++.++..-+.. +...++.+++.+.+ .++.++..++++++..+.. +++....+ ...
T Consensus 13 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASG---PDEAIKAIVDAGG 87 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcC---ChHHHHHHHHCCC
Confidence 344777788999999998765422 13456667766654 3689999999999988642 11100001 134
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 404 LSILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 404 l~~l~~~l~~~-~~v~~~A~~a~~~lc~~---c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
++.+...+.++ .+++..|+.++.++|.. ++..+.. ...+..+.+++.. -+.+.+.....+++.+...-+
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCH
Confidence 55555656543 35999999999999943 3333321 1233334445432 135678888888888876532
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHH-HHHHHHHHHHHHhhcCC
Q 003155 480 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWD 558 (843)
Q Consensus 480 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~ 558 (843)
+......+ ...+..+.+++.... ..-....+..|+.+... .++...... ...++.+..++. ..+
T Consensus 161 -~~~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~--~~~ 225 (252)
T 4hxt_A 161 -EAIKAIVD---AGGVEVLVKLLTSTD-------SEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLT--STD 225 (252)
T ss_dssp -HHHHHHHH---TTHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGG--CSC
T ss_pred -HHHHHHHH---CcCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHC--CCc
Confidence 22222221 233444555554221 11112235556665542 222111122 245565555554 356
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003155 559 MRTMESLCRACKYAVRTS 576 (843)
Q Consensus 559 ~~i~e~~~~~l~~~i~~~ 576 (843)
.++.+.++.++..+....
T Consensus 226 ~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 788999999998887553
No 49
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.73 E-value=8.1 Score=44.64 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=162.0
Q ss_pred cchhHHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHH--HHHHHHHHhhHHHHhhccCCHHHHHHHHH
Q 003155 86 SHPLVLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLI--QVIVPQIMSLKAHLTDSSKDEEDVKAIAR 161 (843)
Q Consensus 86 ~~~ll~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li--~~l~~~~~~l~~~l~~~~~d~~~~~~l~~ 161 (843)
....++.+...|. ++.++..|+.+|..+...... + ..++ ...++.++ ..+. ...+.+.....+.
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~-------~-~~i~~~~~~i~~Lv---~~L~-~~~~~~~~~~A~~ 79 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-------R-HAIMRSPQMVSAIV---RTMQ-NTNDVETARCTAG 79 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTH-------H-HHHTTCHHHHHHHH---HHHH-SCCCHHHHHHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChh-------H-HHHHhccChHHHHH---HHHh-cCCCHHHHHHHHH
Confidence 3456777777776 458899999999988754321 1 1111 11222222 2222 1235555555555
Q ss_pred HHHHHhhHH--HHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHH
Q 003155 162 LFADMGDSY--VELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQV 239 (843)
Q Consensus 162 l~~~~~e~~--~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 239 (843)
.+..++... ...+.+ ...++.++.+...++.++...+..-...++..-.. .....
T Consensus 80 ~L~~Ls~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~------------------~~~~v 136 (644)
T 2z6h_A 80 TLHNLSHHREGLLAIFK-----SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG------------------AKMAV 136 (644)
T ss_dssp HHHHHTTSHHHHHHHHT-----TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT------------------HHHHH
T ss_pred HHHHHhcChhhHHHHHH-----cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch------------------hHHHH
Confidence 555555432 222222 14677778888888877777776665555432100 00000
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhhc-------ChhHH
Q 003155 240 FRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL-------GGDAT 312 (843)
Q Consensus 240 ~~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl-------~~~~~ 312 (843)
.. ...++.+++.++-+. . +.+.. +.+++..++.-- .....
T Consensus 137 ~~---~g~i~~Lv~lL~~~~------~-------~~~~~-----------------a~~~L~~La~~~~~~~~~i~~~g~ 183 (644)
T 2z6h_A 137 RL---AGGLQKMVALLNKTN------V-------KFLAI-----------------TTDCLQILAYGNQESKLIILASGG 183 (644)
T ss_dssp HH---TTHHHHHHHGGGCCC------H-------HHHHH-----------------HHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HH---CCChHHHHHHHCcCC------H-------HHHHH-----------------HHHHHHHHHhcCcHHHHHHHHcCC
Confidence 00 123444444443221 0 12222 333444333210 00112
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHH
Q 003155 313 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 388 (843)
Q Consensus 313 l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~ 388 (843)
++ .|.+.+.. ......+++++.++..++.+-... +...++.++..+.. .++.++..++++++..+.
T Consensus 184 v~----~Lv~lL~~----~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 184 PQ----ALVNIMRT----YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HH----HHHHHHTT----CCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGG
T ss_pred hH----HHHHHHHc----CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhh
Confidence 23 33333321 334556788888988888532211 12345555555432 368899999999999876
Q ss_pred HHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHhhcccCCCCCChh
Q 003155 389 WFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAE 462 (843)
Q Consensus 389 ~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~---c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~ 462 (843)
.-.. . .....+++.|...+.++ .+++..|+.++.+||.. .+..+. .-++.++..+...- -..+
T Consensus 254 ~~~~-~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------~~~~ 322 (644)
T 2z6h_A 254 AATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-------DRED 322 (644)
T ss_dssp GCTT-C---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-------TCHH
T ss_pred cchh-h---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC-------CcHH
Confidence 4322 2 24567777777777643 34999999999999863 233333 23455555443321 1146
Q ss_pred hHHHHHHHHHHHHhcCCH
Q 003155 463 DSLHLVEALSMVITELPQ 480 (843)
Q Consensus 463 ~~~~l~eaig~vi~~~p~ 480 (843)
.+.....+++.+...-+.
T Consensus 323 v~~~a~~aL~nL~~~~~~ 340 (644)
T 2z6h_A 323 ITEPAICALRHLTSRHQE 340 (644)
T ss_dssp HHHHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHhcCCch
Confidence 777888899988765444
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.68 E-value=8.1 Score=44.43 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=74.2
Q ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCC--CCcHHH
Q 003155 298 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQL 375 (843)
Q Consensus 298 d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~l--p~~~~v 375 (843)
-+++.++.+-+ .++.+.+.+.+.+.+. +.+..-+-+|++|++.+....++ .++.+++.+..+ ..++.|
T Consensus 126 lAL~~L~~i~~-~~~~~~l~~~l~~~L~-----~~~~~VRk~A~~al~~l~~~~p~----~v~~~~~~l~~lL~D~d~~V 195 (618)
T 1w63_A 126 LALCTLGCMGS-SEMCRDLAGEVEKLLK-----TSNSYLRKKAALCAVHVIRKVPE----LMEMFLPATKNLLNEKNHGV 195 (618)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHH-----SCCHHHHHHHHHHHHHHHHHCGG----GGGGGGGGTTTSTTCCCHHH
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHHHhCCCCHhH
Confidence 34555565555 5677778888877774 45566677999999999886532 334455555443 247899
Q ss_pred HHHHHHHHHhhHHHHhh-CCCCchhHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHHHHH
Q 003155 376 LQTVCLTIGAYSKWFDA-ASSDPSILASVLSILTSG-------------MSTSEDTAAAAALAFRHICDD 431 (843)
Q Consensus 376 ~~t~~~~ig~y~~~l~~-~p~~~~~l~~vl~~l~~~-------------l~~~~~v~~~A~~a~~~lc~~ 431 (843)
+.+++.++++.++.=.. +.....+++.++..|... ..+|- .+.....+|.+++..
T Consensus 196 ~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 196 LHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF-LQVRILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH-HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh-HHHHHHHHHHHhCCC
Confidence 99999999886531100 000001445555544332 22333 667777778777753
No 51
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.86 E-value=1.1 Score=45.43 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=88.3
Q ss_pred CCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCCCCChhhhHHhH
Q 003155 195 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS-AYESLVSLVSFRVQYPQDYQDLSLEDLKEFK 273 (843)
Q Consensus 195 ~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~ 273 (843)
.+..+...++++...+.+.+.+. .|. +.+ -...+++.++.|+--+ .|.+
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~-~y~------------------~~~~ea~~~lP~LveKlGd~----------k~~v- 148 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDT-ETP------------------MSQEEVSAFVPYLLLKTGEA----------KDNM- 148 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT-TCC------------------CCHHHHHHHHHHHHHGGGCS----------SHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-ccc------------------chHHHHHHHHHHHHHHhCCC----------hHHH-
Confidence 46678888999988887776542 121 011 1235677788887322 2334
Q ss_pred hhhccccccCCCcchhhhhhchhhHHHHHHhhhcChhHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCC
Q 003155 274 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 353 (843)
Q Consensus 274 ~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~vl~~~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~ 353 (843)
|.. +.+++..++.+.++..+++.+.+ .+. +.+|+.+|.|+..++++-+....
T Consensus 149 --R~~-----------------~r~il~~l~~v~~~~~v~~~l~~----g~k-----sKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 149 --RTS-----------------VRDIVNVLSDVVGPLKMTPMLLD----ALK-----SKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp --HHH-----------------HHHHHHHHHHHHCHHHHHHHHHH----GGG-----CSCHHHHHHHHHHHHHHHHHHCS
T ss_pred --HHH-----------------HHHHHHHHHHHCCHHHHHHHHHH----HHc-----cCCHHHHHHHHHHHHHHHHhcCC
Confidence 445 66777777777787766666544 331 56799999999999988775443
Q ss_pred ccccch---HHHhhhccCCCCcHHHHHHHHHHHHhhHHHH
Q 003155 354 VEAEVM---PQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 390 (843)
Q Consensus 354 ~~~~~l---~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l 390 (843)
.....+ +.+...+.. .+..||.+++.++.......
T Consensus 201 ~~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 201 SPLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GGGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHh
Confidence 333344 444444432 37899999999998766655
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.80 E-value=0.21 Score=48.59 Aligned_cols=137 Identities=16% Similarity=0.161 Sum_probs=85.1
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 404 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~vl 404 (843)
+.++...+.++++++.++..-+.. +...++.++..|.+ .++.++..++++++..+..-..+.. ... ...+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 567888899999999998653322 12456677766653 3789999999999987632111100 000 1234
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcC
Q 003155 405 SILTSGMSTS-EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 478 (843)
Q Consensus 405 ~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~---~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~ 478 (843)
+.+...+.++ .+++..|+.++.++|..... .+.. ...+..+..++.. -+.+.+.....+++.+...-
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSS-----PNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCC
Confidence 4555555544 34999999999999954332 2221 1233444445532 14677888888999888754
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.77 E-value=0.75 Score=47.66 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=83.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHH-HHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA-SVL 404 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~-~vl 404 (843)
+.+-.-.+.++++++.++..-+.. +...++.++..|.+ +..+.++..++|+|+..+.-....++ .+.. ..+
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~-~~~~~v~~~A~~ALsnl~~~~~~~~~--~~~~~ggi 169 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVREQEAGLL--QFLRLDGF 169 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTTCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCCcHHHH--HHHHCCCH
Confidence 345567889999999998753322 23556777776653 22578999999999987631111000 0111 233
Q ss_pred HHHHhccCC-CHHHHHHHHHHHHHHHHHhh---hhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcC
Q 003155 405 SILTSGMST-SEDTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 478 (843)
Q Consensus 405 ~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~---~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~ 478 (843)
+.|...+.+ ..+++..|++++.++|.... ..++ +.++.++ .++..+ +.+.+.....+++.++...
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv----~LL~~~-----d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV----ALVRTE-----HSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH----HHHTSC-----CSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH----HHHcCC-----ChhHHHHHHHHHHHHHhCC
Confidence 444444433 33599999999999997632 2222 3344444 444321 3567888999999999874
No 54
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.60 E-value=9.8 Score=41.33 Aligned_cols=275 Identities=10% Similarity=0.058 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHh
Q 003155 372 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 450 (843)
Q Consensus 372 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~ 450 (843)
++...+-+...|.+|... .|+ +-...++.++.-..+.+ .++..|-..+-.||++ .++.-+.+.+.++
T Consensus 41 ~~k~K~LaaQ~I~kffk~---FP~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKH---FPE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGG---CGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh---Chh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHH
Confidence 567788888888877544 465 66778887777665432 3777777777777755 5577888888888
Q ss_pred hcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhH---HHHHHHHHH----hcCCccccccCchhhHH----
Q 003155 451 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP---VVTPLQEII----NQGPEILQKKHPRDLTV---- 519 (843)
Q Consensus 451 ~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p---~~~~l~~~~----~~~~~~~~~~~~~~~~~---- 519 (843)
++.+ +..+...+=.++-.++..=|.......+.++.+. +=.++-+.+ ..-... ....++..
T Consensus 109 Lqtd-----d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~---~l~~E~E~~i~~ 180 (507)
T 3u0r_A 109 LQTD-----DSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDE---VLTKEVEELILT 180 (507)
T ss_dssp TTCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTT---TSCHHHHHHHHH
T ss_pred Hhcc-----chHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchh---hccHHHHHHHHH
Confidence 8642 2344444555555555543333222223222221 000000000 000000 00011100
Q ss_pred ------------HHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHh---hc-CCHHHHHHHHHHHHHHHHhhh--hhhh
Q 003155 520 ------------HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---RA-WDMRTMESLCRACKYAVRTSK--RFMG 581 (843)
Q Consensus 520 ------------~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~---~~-~~~~i~e~~~~~l~~~i~~~~--~~~~ 581 (843)
....+-.+.+.++.... ..-.+++.+++...... |. .|.+.+++...|+++++..+. ....
T Consensus 181 ~ikK~L~DVT~~EF~L~m~lL~~lkl~~t-~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~St 259 (507)
T 3u0r_A 181 ESKKVLEDVTGEEFVLFMKILSGLKSLQT-VSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHST 259 (507)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHTSGGGSS-HHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCH
T ss_pred HHHHHhccccHHHHHHHHHHHHhcccccC-chHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChH
Confidence 01112222222221111 12246777777665432 33 688999999999999976653 3445
Q ss_pred hhHHHHHHHHHHHHhhcCCc-----hHhHHHHHHHHHh---CCCcchhHHHHHHHHHHHHHHHHhhccccc-------C-
Q 003155 582 ITIGAILEEIQGLYQQHQQP-----CFLYLSSEVIKIF---GSDPSCASYLHNLIEALFKRTTCLLTSIEE-------F- 645 (843)
Q Consensus 582 p~l~~l~~~l~~~~~~~~~~-----~~L~l~~~li~~f---g~~~~~~~~l~~~l~~l~~~~~~~l~~~~~-------~- 645 (843)
.++.-+++.++-.+..-+.+ .=|.++..+...- |..+... +.+..+++.-+..+-.... .
T Consensus 260 kFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~----~~l~~iy~~L~~ymP~~p~~~~~~~~~~ 335 (507)
T 3u0r_A 260 RFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLE----TNLRKLFDKLLEYMPLPPEEAENGENAG 335 (507)
T ss_dssp HHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHH----HHHHHHHHHHHTTSCCCC----------
T ss_pred HHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHH----HHHHHHHHHHHHHCCCCccccccccccc
Confidence 56666666666656543332 3456666655553 3222233 3343433333333321000 0
Q ss_pred CcCCch----HHHHHHHHHHHHhhCCCccc
Q 003155 646 TSRPDV----ADDCFLLASRCIRYCPQLFI 671 (843)
Q Consensus 646 ~~~pD~----~~~~f~l~~~~~~~~p~~~~ 671 (843)
...|++ ++.+.-.++++.+++|..+.
T Consensus 336 ~~~p~l~fS~vECLLy~fH~L~~k~P~~l~ 365 (507)
T 3u0r_A 336 NEEPKLQFSYVECLLYSFHQLGRKLPDFLT 365 (507)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred ccCcccchhHHHHHHHHHHHHhhhChhhhc
Confidence 123443 67777778888899998763
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.41 E-value=0.34 Score=58.32 Aligned_cols=213 Identities=16% Similarity=0.184 Sum_probs=137.5
Q ss_pred cchhhHHHHHHHHhhccCCCcc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHHHHhcc
Q 003155 334 WRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSILTSGM 411 (843)
Q Consensus 334 W~~~Ea~L~~l~~iae~~~~~~-~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~vl~~l~~~l 411 (843)
=.-.+|+-.+..++...++++. ...+|.++..+.+ ...=.....++.+++++.+-. |+.. ..++.+++.+..++
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~ 184 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAA---KDQVALRMPELIPVLSETM 184 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHh---HHHHHHhccchhcchHhhc
Confidence 3467899999999999998753 3456777766632 223567788889998887632 3211 47899999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003155 412 STS-EDTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 489 (843)
Q Consensus 412 ~~~-~~v~~~A~~a~~~lc~~c~-~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~ 489 (843)
.+. .+|..+|-.++.++|.-.. +.+.|+++.|+..+.+- +. +-|+|-.+.+.-=-.+.-...-+
T Consensus 185 ~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-----------~~---~~~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 185 WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-----------TE---VPETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-----------TH---HHHHHHHHTTCCCCSCCCHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-----------hh---hHHHHHHhhcCeeEeeecchhHH
Confidence 874 3499999999999997555 46889999998766421 12 33343333332100111222335
Q ss_pred hhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 003155 490 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 569 (843)
Q Consensus 490 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l 569 (843)
++-|++.+ -++..... ..|..++.++.+++++ +.|..+.+++.+++|-+..+.+. ..+++++|.+-+++
T Consensus 251 ~~~p~l~r---~l~~~~~~----~~r~~~~~~~n~~~lv---~~~~~~~~f~~~l~p~~~~~~~~-~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 251 IMVPLLSR---GLNERETG----IKRKSAVIIDNMCKLV---EDPQVIAPFLGKLLPGLKSNFAT-IADPEAREVTLRAL 319 (986)
T ss_dssp HHHHHHHH---HHTSSSHH----HHHHHHHHHHHHHTTC---CCHHHHHHHHTTTHHHHHHHTTT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHh---hhccCcch----hheeeEEEEcchhhhc---CCHHHHhhhhhhhhhHHHHHhhc-cCCHHHHHHHHHHH
Confidence 56666433 23221111 1234444567777665 45777788888889988887765 35899988888888
Q ss_pred HHHHHh
Q 003155 570 KYAVRT 575 (843)
Q Consensus 570 ~~~i~~ 575 (843)
..+.+.
T Consensus 320 ~~l~~~ 325 (986)
T 2iw3_A 320 KTLRRV 325 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776655
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.09 E-value=2.1 Score=51.52 Aligned_cols=243 Identities=10% Similarity=0.132 Sum_probs=148.9
Q ss_pred hHHHHHHHHhhccCCCc--cccchHHHhhhccC-CCC-cHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC
Q 003155 338 EAALFCIRAISTYVSVV--EAEVMPQVMALLPK-LPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 413 (843)
Q Consensus 338 Ea~L~~l~~iae~~~~~--~~~~l~~l~~~l~~-lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~ 413 (843)
|+++.+++++++..... ..+++-.+++.+.. ..+ ...||.++-..+-.+..-+ +|. -+..+++.++.+|..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~---a~~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPV---AIKALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGG---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHH---HHHHHHHHHHHHhcc
Confidence 99999999999776543 23333233333322 122 4678888888877666544 443 467888888887754
Q ss_pred CH--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003155 414 SE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 491 (843)
Q Consensus 414 ~~--~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~ 491 (843)
.. .....|...+.++++.++..+.-.++.++..+....- +...+......+++-.+.+.+...+ +
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----d~k~~v~~~~~~~~~~~~~~~~n~d--------~ 211 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW-----DTKKEVKAAATAAMTKATETVDNKD--------I 211 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHGGGCCCTT--------T
T ss_pred ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc-----cCcHHHHHHHHHHHHHHHhcCCCcc--------h
Confidence 32 2668899999999999988888899999988887763 3445655555555555555544322 3
Q ss_pred hHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCC-cchHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 003155 492 LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACK 570 (843)
Q Consensus 492 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~ 570 (843)
.|.+..|-+++.... .+...+..|+..- .+.. ..| .+.-+.|++.+-|.. ..+.+-.+.+-++.
T Consensus 212 ~~~~~~~~~~~~~p~---------~~~~~~~~l~~~t-fv~~v~~~---~l~~~~p~l~r~l~~--~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 212 ERFIPSLIQCIADPT---------EVPETVHLLGATT-FVAEVTPA---TLSIMVPLLSRGLNE--RETGIKRKSAVIID 276 (986)
T ss_dssp GGGHHHHHHHHHCTT---------HHHHHHHHHTTCC-CCSCCCHH---HHHHHHHHHHHHHTS--SSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcChh---------hhHHHHHHhhcCe-eEeeecch---hHHHHHHHHHhhhcc--CcchhheeeEEEEc
Confidence 344444555554331 2333334444321 1111 133 556668888887753 23444445555555
Q ss_pred HHHHhh--hhhhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHH
Q 003155 571 YAVRTS--KRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKI 613 (843)
Q Consensus 571 ~~i~~~--~~~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~ 613 (843)
++-+-. .....||+|.+++-+...+.+...|+.=.++......
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 554332 3467899999999888888887777765554444333
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.08 E-value=0.89 Score=45.41 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=115.1
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASV 403 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~v 403 (843)
+.+......++++++.+... ... +...++.++..+.+ .++.++..++++++.++.--..+.. ... ...
T Consensus 23 s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~ 97 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGA 97 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHcCC
Confidence 35566777888888665443 111 23456667766654 2589999999999988742111110 011 125
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHH
Q 003155 404 LSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGY-LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 481 (843)
Q Consensus 404 l~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~-~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~ 481 (843)
++.+...+.++ .+++..|+.++.+++.......... -...+..+...+.. -+...+.....+++.+...-+ +
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~ 171 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGN-E 171 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcCCh-H
Confidence 56666666544 3499999999999986543221100 01234444455542 145677888888888876542 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHH-HHHHHHHHHHHhhcCCHH
Q 003155 482 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMR 560 (843)
Q Consensus 482 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~il~~~~~~~~ 560 (843)
......+ ...+..+-+++.... ..-....+..|+.+... .++....+.+ ...+.+..++.. .+.+
T Consensus 172 ~~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~--~~~~ 237 (252)
T 4db8_A 172 QIQAVID---AGALPALVQLLSSPN-------EQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSH--ENEK 237 (252)
T ss_dssp HHHHHHH---TTCHHHHHHGGGCSS-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTC--SSSH
T ss_pred HHHHHHH---CCCHHHHHHHHCCCC-------HHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCC--CCHH
Confidence 2222111 223334444444221 11112235566666532 2222222222 345555554432 4667
Q ss_pred HHHHHHHHHHHH
Q 003155 561 TMESLCRACKYA 572 (843)
Q Consensus 561 i~e~~~~~l~~~ 572 (843)
+.+.++.++..+
T Consensus 238 v~~~A~~~L~~l 249 (252)
T 4db8_A 238 IQKEAQEALEKL 249 (252)
T ss_dssp HHHTHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 58
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.56 E-value=7.9 Score=39.82 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=64.1
Q ss_pred cchHHHhh-hccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCc------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 003155 357 EVMPQVMA-LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVLSILTSGMSTSEDTAAAAALAFRHIC 429 (843)
Q Consensus 357 ~~l~~l~~-~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc 429 (843)
..++.++. .|.+ +++.++..+++++|..+. .+|... .-+++++..+.+ +.+..++..|++|+.++|
T Consensus 81 G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 81 SGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLV 153 (296)
T ss_dssp THHHHHHHTTTTC--SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHH
Confidence 34566776 5432 378999999999998753 122100 034444444432 113348999999999999
Q ss_pred HHhhh---hhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 430 DDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 430 ~~c~~---~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
..... .+. +-++.|+ .++.. -+...+....-+++++...
T Consensus 154 ~~~~~~~~~~~~~ggi~~L~----~lL~~-----~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 154 REQEAGLLQFLRLDGFSVLM----RAMQQ-----QVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp TTCHHHHHHHHHTTHHHHHH----HHHHS-----SCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHH----HHHcC-----CCHHHHHHHHHHHHHHHhC
Confidence 65433 222 2344444 44432 1467788889999998876
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.28 E-value=1.1 Score=43.15 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=80.3
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchh-HHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSI-LASVL 404 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~-l~~vl 404 (843)
+.+..-.+.++++++.++..-+.. +...++.++..+.+ .++.++..++++++..+..-..+.. .. -..++
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i 140 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 140 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHH--HHHHcCcH
Confidence 456788899999999998643222 13466777776643 2689999999999998741111000 00 11244
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHH
Q 003155 405 SILTSGMSTS-EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 475 (843)
Q Consensus 405 ~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~---~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi 475 (843)
+.+.+.+.++ .+++..|+.++.++|..... .+.. ...+..+..++.. -+.+.+.....+++.+.
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSH-----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHh
Confidence 5555555443 34999999999999964322 2211 1234444455542 13566777777776553
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.07 E-value=0.84 Score=45.58 Aligned_cols=135 Identities=18% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 404 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~vl 404 (843)
+.+..-.+.++++++.++.+-+.. +...++.++..+.+ +++.++..++++++..+..-..... ... ..++
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i 140 (252)
T 4db8_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 140 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHH--HHHHCCCH
Confidence 345777889999999998753322 12456667766654 3789999999999998642111100 011 1355
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcC
Q 003155 405 SILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 478 (843)
Q Consensus 405 ~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~---~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~ 478 (843)
+.+.+.+.++ .+++..|+.++.+++.... ..+. ..++.++ .++.. -+.+.+.....+++.+...-
T Consensus 141 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----~ll~~-----~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----QLLSS-----PNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH----HGGGC-----SSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH----HHHCC-----CCHHHHHHHHHHHHHHhcCC
Confidence 6666666543 3499999999999996432 2222 3444444 44432 14567888888888887543
No 61
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=90.27 E-value=25 Score=38.86 Aligned_cols=305 Identities=13% Similarity=0.085 Sum_probs=160.8
Q ss_pred chhHHHHHhhcC--CCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHH--HHHHHHHhhHHHHhhccCCHHHHHHHHHH
Q 003155 87 HPLVLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ--VIVPQIMSLKAHLTDSSKDEEDVKAIARL 162 (843)
Q Consensus 87 ~~ll~~~~~~L~--~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~--~l~~~~~~l~~~l~~~~~d~~~~~~l~~l 162 (843)
...++.+.+.|. +++++..|+.++..+...... ...++. ..++.+.. .+.. ..|.+....-+..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--------~~~~~~~~~~i~~Lv~---~L~~-~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--------RHAIMRSPQMVSAIVR---TMQN-TNDVETARCTAGT 83 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--------HHHHHTCHHHHHHHHH---HHHH-CCCHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--------HHHHHhCcchHHHHHH---HHhc-CCCHHHHHHHHHH
Confidence 456777777776 457899999999988753321 111111 22333322 2221 2355555555555
Q ss_pred HHHHhhH--HHHHHHcCCchHHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHHH
Q 003155 163 FADMGDS--YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 240 (843)
Q Consensus 163 ~~~~~e~--~~~~l~~~~~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 240 (843)
+..++.. ....+.+ ...++.++.+...++.++...+......++..-. + .+. ...
T Consensus 84 L~~ls~~~~~~~~i~~-----~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----------~-----~~~---~i~ 140 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFK-----SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE----------G-----AKM---AVR 140 (529)
T ss_dssp HHHHTTSHHHHHHHHH-----TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT----------T-----HHH---HHH
T ss_pred HHHHHcCchhHHHHHH-----cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc----------c-----hHH---HHH
Confidence 5555432 2222222 1467777788788887777777666555543210 0 000 000
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhhHHhHhhhccccccCCCcchhhhhhchhhHHHHHHhhh-------cChhHHH
Q 003155 241 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASV-------LGGDATL 313 (843)
Q Consensus 241 ~~~~~~L~~~l~~k~~~p~d~~~~~~e~~e~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~v-------l~~~~~l 313 (843)
. ...++.+++.+.-++ . + .|.. +..++..++.- +.....+
T Consensus 141 ~---~g~i~~L~~ll~~~~------~----~---~~~~-----------------~~~~L~~la~~~~~~~~~i~~~~~i 187 (529)
T 1jdh_A 141 L---AGGLQKMVALLNKTN------V----K---FLAI-----------------TTDCLQILAYGNQESKLIILASGGP 187 (529)
T ss_dssp H---HTHHHHHHHGGGCCC------H----H---HHHH-----------------HHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred H---cCCHHHHHHHHhcCC------H----H---HHHH-----------------HHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 0 123444444443221 0 1 1222 22333332210 0001233
Q ss_pred HHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHH
Q 003155 314 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKW 389 (843)
Q Consensus 314 ~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~ 389 (843)
+.+...+.. ..+....++++.++..++..-... +...++.+++.+.. .++.++..++++++.++..
T Consensus 188 ~~L~~ll~~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 188 QALVNIMRT--------YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHHHH--------CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--------CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcC
Confidence 333333322 344667788888888888532111 12345555554432 3688999999999998875
Q ss_pred HhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHhhcccCCCCCChhh
Q 003155 390 FDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAED 463 (843)
Q Consensus 390 l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~---c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~ 463 (843)
... .. ....+++.+.+.++++ .+++..|+.++.++|.. .+..+. +-++.+++.+...- -..+.
T Consensus 258 ~~~-~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~-------~~~~v 326 (529)
T 1jdh_A 258 ATK-QE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-------DREDI 326 (529)
T ss_dssp CTT-CS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT-------TCHHH
T ss_pred Chh-hH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC-------CHHHH
Confidence 322 22 3456777777777543 34999999999999863 333333 23555555544321 12467
Q ss_pred HHHHHHHHHHHHhcCCH
Q 003155 464 SLHLVEALSMVITELPQ 480 (843)
Q Consensus 464 ~~~l~eaig~vi~~~p~ 480 (843)
+.....+++.+....|.
T Consensus 327 ~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 327 TEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHcCCch
Confidence 77888899988765544
No 62
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=90.22 E-value=3.9 Score=42.22 Aligned_cols=173 Identities=9% Similarity=0.167 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCcccc---cchhHHHHH-hhcC-CCcchHH-HHHHHHHHHhhhccCCCCCccCcH-hHH
Q 003155 60 ELKEQVLEAFASWLRLKHRIPGSVLA---SHPLVLTAL-SSLH-SEILSEA-SVNVISELIHYSAAGSSGGATVNM-PLI 132 (843)
Q Consensus 60 ~~~~~~L~cl~sWi~~~~~i~~~~l~---~~~ll~~~~-~~L~-~~~~~~~-A~~~l~eii~~~~~~~~~~~~~~~-~li 132 (843)
.++...|+-+..|++-. -+.+.+. -.|+++.++ ..-+ .|+.|+. ...++..++++-... ..... ..+
T Consensus 44 ~vKkeiLkLiet~i~~~--~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~----i~~~vp~Il 117 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRS--NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH----ITAEIPQIF 117 (321)
T ss_dssp HHHHHHHHHHHHHHTTC--SCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG----GGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH----hhhhHHHHH
Confidence 37788999999999853 1111221 145554443 3333 3566654 566666666654421 10112 233
Q ss_pred HHHHHHHHhhHHHHhhc-cCCHHHHHHHHHHHHHHhhHHHHHHHcCC-chHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 003155 133 QVIVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSL 210 (843)
Q Consensus 133 ~~l~~~~~~l~~~l~~~-~~d~~~~~~l~~l~~~~~e~~~~~l~~~~-~~~~~ll~~ll~~~~~~~~~vs~~~~~FW~~l 210 (843)
..++.-. .+.+... .+=+|-..++.+++-++..+..+.+..=+ +.+..+++.++....|++++|++..+.--..+
T Consensus 118 ~~VFe~T---L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 118 DAVFECT---LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHH---HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 4444222 2233322 23357777888988888887776666543 45778899999999999999999999988887
Q ss_pred HHHhcccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 003155 211 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQ 256 (843)
Q Consensus 211 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~ 256 (843)
...+.+.+ +-..+.|+.+|..++.-++.-++
T Consensus 195 l~n~~~~~---------------~~~~~Fy~~fy~~il~~if~VlT 225 (321)
T 1w9c_A 195 LQNVAQEE---------------AAAQSFYQTYFCDILQHIFSVVT 225 (321)
T ss_dssp HHHHHHCH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCh---------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77663210 12345677777777666655443
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.12 E-value=29 Score=37.93 Aligned_cols=351 Identities=12% Similarity=0.109 Sum_probs=169.4
Q ss_pred CCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH--HHHH
Q 003155 332 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL--ASVL 404 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~~vl 404 (843)
.++...+.++.+++.++..-+.. +...+|.++..|.+ +++.++..++++++..+.. ++++...+ ...+
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~---~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFR---STTNKLETRRQNGI 88 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCH
Confidence 45677788899999887543221 13557777777763 4788999999999987752 12211001 1223
Q ss_pred HHHHhccC-C-CHHHHHHHHHHHHHHHHH--hhhhhcCCHHHHHHHHHHhhc-------ccCCCC----CChhhHHHHHH
Q 003155 405 SILTSGMS-T-SEDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVN-------GEGSLK----VSAEDSLHLVE 469 (843)
Q Consensus 405 ~~l~~~l~-~-~~~v~~~A~~a~~~lc~~--c~~~l~~~~~~li~~~~~~~~-------~~~~~~----l~~~~~~~l~e 469 (843)
+.|.+.|. . ..+++..|++++.++|.. ++..++. ..+..+..++. .++..+ .+.+.......
T Consensus 89 ~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~---g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 89 REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA---DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH---HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh---ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 34444444 2 234999999999999953 3333331 33334444441 000000 11223335666
Q ss_pred HHHHHHhcCCHHHHHHHHH--HhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHH---------------------
Q 003155 470 ALSMVITELPQVDAKKALE--MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY--------------------- 526 (843)
Q Consensus 470 aig~vi~~~p~~~~~~~l~--~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--------------------- 526 (843)
+++.+... ++.+....+ ..+.+++.-++........+ . .........+..++.
T Consensus 166 aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~-~-~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 166 CLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCD-D-KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT-C-TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCc-h-HHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 66666654 333333332 45555555555433221110 0 000000000111110
Q ss_pred -------hhhcc-----------------CCcchHHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh---
Q 003155 527 -------IFRYV-----------------NHPEAVADA-IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR--- 578 (843)
Q Consensus 527 -------~~~~~-----------------~~~~~~~~~-~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~--- 578 (843)
.+... ..++....+ -....+.+..++.. ..++.+.|.++.++..+...-+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHHHHHHHHHHhccCcCcchH
Confidence 00000 000000000 11233445555543 34578889999998877532111
Q ss_pred -----hh--hhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccC-CcCCc
Q 003155 579 -----FM--GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEF-TSRPD 650 (843)
Q Consensus 579 -----~~--~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~-~~~pD 650 (843)
.+ ...+|.+++.+. .+......-+.+++.....++.....+.. ..+.....+|...+.. ...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~-----~~~~~v~~~A~~aL~nls~~~~~~~~i~~---~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQ-----SGNSDVVRSGASLLSNMSRHPLLHRVMGN---QVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTSGGGHHHHHH---HTHHHHHHTTTSCCSCSTTHHH
T ss_pred HHHHHHHHHcCCchHHHHHHh-----CCCHhHHHHHHHHHHHHhcCHHHHHHHHH---hhhHHHHHhccCCCCCCCCcHH
Confidence 11 234566665543 23333444444555544444444433322 2333444555531111 11245
Q ss_pred hHHHHHHHHHHHHhhCCCc---ccCcCCcHHHHHHHHHhccCC-ChhHHHHHHHHHHHhhc
Q 003155 651 VADDCFLLASRCIRYCPQL---FIPSSVFPSLVDCSMIGITVQ-HREASNSILTFLSDIFD 707 (843)
Q Consensus 651 ~~~~~f~l~~~~~~~~p~~---~~~s~~l~~i~~~~~~~l~~~-e~~~~~s~~~fl~~li~ 707 (843)
++.....-+..++...+.. +.....++.+.++ +... ...+.+.|+..+..++.
T Consensus 393 v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L----~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL----CRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH----HcCCCcHHHHHHHHHHHHHHHc
Confidence 7777777777777766542 2223334444444 3344 66788888888888775
No 64
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=88.70 E-value=33 Score=37.94 Aligned_cols=335 Identities=6% Similarity=-0.010 Sum_probs=161.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhH--HHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL--ASV 403 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~~v 403 (843)
+.+....+.++.+++.++..-... ....++.++..|.+- .++.++..++..++..+.- +++...+ ...
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~----~~~~~~i~~~g~ 102 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHH----REGLLAIFKSGG 102 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS----HHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcC----chhHHHHHHcCC
Confidence 456777889999999988643211 113456666666432 3678899999999886542 1100000 124
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 404 LSILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 404 l~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~---~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
++.+.+.+.++ .+++..|+.++.++|.... ..+.. ...+..+..++..+ +.+.+.....+++.+...-
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~-----~~~~~~~~~~~L~~la~~~- 174 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGN- 174 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH--HTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH--cCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhCC-
Confidence 44555555443 3499999999999997632 22210 12333344455421 2445555666777665532
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhH-HHHHHHHHhhhccCCcchHHHHH-HHHHHHHHHHHHhhcC
Q 003155 480 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLT-VHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAW 557 (843)
Q Consensus 480 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~ 557 (843)
++........ ..+..+-+++..... .... .....|..+.. .++...... ...+|.+..++.. .
T Consensus 175 ~~~~~~i~~~---~~i~~L~~ll~~~~~-------~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~~~~L~~ll~~--~ 239 (529)
T 1jdh_A 175 QESKLIILAS---GGPQALVNIMRTYTY-------EKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTD--P 239 (529)
T ss_dssp HHHHHHHHHT---THHHHHHHHHHHCCC-------HHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHTTTTS--S
T ss_pred HHHHHHHHHC---CCHHHHHHHHHhCCh-------HHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhC--C
Confidence 2222211111 112233333332211 1111 11333443332 122111122 2344444444432 3
Q ss_pred CHHHHHHHHHHHHHHHHhhhh--hhhhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHH-HHHHH
Q 003155 558 DMRTMESLCRACKYAVRTSKR--FMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-ALFKR 634 (843)
Q Consensus 558 ~~~i~e~~~~~l~~~i~~~~~--~~~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~-~l~~~ 634 (843)
+.++.+.++.++....+.... .....+|.++..+ ..+.+.....+...+..+.... .+....+.. ..+..
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-----GSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEA 312 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHH
T ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH-----cCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHH
Confidence 677888888888877654322 1223445444443 2334444444555555554431 111111111 11122
Q ss_pred HHHhhcccccCCcCCchHHHHHHHHHHHHhhCCC------cccCcCCcHHHHHHHHHhccCCC-hhHHHHHHHHHHHhhc
Q 003155 635 TTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQ------LFIPSSVFPSLVDCSMIGITVQH-REASNSILTFLSDIFD 707 (843)
Q Consensus 635 ~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~------~~~~s~~l~~i~~~~~~~l~~~e-~~~~~s~~~fl~~li~ 707 (843)
...++.. ..++++++..-...+..+....|. .+.....++.++ ..+..++ ....+.++..+.++..
T Consensus 313 L~~ll~~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~----~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 313 LVRTVLR---AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV----KLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH----HTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHc---cCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH----HHhccccchHHHHHHHHHHHHHhc
Confidence 2333331 123467777777777766554443 112222333333 3355544 3677888888888775
No 65
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.10 E-value=7.3 Score=37.00 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|..+..++.+++.++. .+.++.++..+.. +++.+|..+++.+|++. .++ .++.+ ...
T Consensus 56 ~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~-----~~~---~~~~L----~~~ 115 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG-----DER---AVEPL----IKA 115 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----CGG---GHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC-----cHH---HHHHH----HHH
Confidence 5677788888999988763 2456667766643 47899999999999863 232 44443 444
Q ss_pred cCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 411 MSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 411 l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
+.++ ..|+..|+.++.++.. . .. +..+...+.. -+...|....+++|.+
T Consensus 116 l~d~~~~vr~~a~~aL~~~~~---~---~~----~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 116 LKDEDWFVRIAAAFALGEIGD---E---RA----VEPLIKALKD-----EDGWVRQSAADALGEI 165 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHTC---G---GG----HHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCC---H---HH----HHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 5444 3489999999988843 1 12 2333444432 1357888888888877
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=84.72 E-value=61 Score=37.08 Aligned_cols=250 Identities=9% Similarity=0.055 Sum_probs=129.2
Q ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHh
Q 003155 317 YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD 391 (843)
Q Consensus 317 ~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~ 391 (843)
.+.|.+.+. ..+++...+++-+++.++.+-+.. +...++.++..+.+- ....++..++.++...+.
T Consensus 142 i~~Lv~lL~-----~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~--- 212 (644)
T 2z6h_A 142 LQKMVALLN-----KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSV--- 212 (644)
T ss_dssp HHHHHHGGG-----CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHC-----cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhc---
Confidence 344445543 346777777778888888642221 134566777766543 356777888888777653
Q ss_pred hCCCCchhH--HHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 003155 392 AASSDPSIL--ASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV 468 (843)
Q Consensus 392 ~~p~~~~~l--~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~ 468 (843)
+++....+ ..+++.+.+.+.++ .+++..|+.++.++|...... .....++..+..++.. -+.+.+....
T Consensus 213 -~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~-----~d~~v~~~a~ 284 (644)
T 2z6h_A 213 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS-----DDINVVTCAA 284 (644)
T ss_dssp -CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTC-----SCHHHHHHHH
T ss_pred -CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcC-----CCHHHHHHHH
Confidence 33311111 13455666666543 348999999999998654332 2234566666666643 1356777788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHH-HH-HHHHH
Q 003155 469 EALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD-AI-QRLWP 546 (843)
Q Consensus 469 eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~-~~~~~ 546 (843)
.+++.+...- ++.+....+ ...+..+-+++..... ...-....+..|+.+...-...+.... +. ...+|
T Consensus 285 ~aL~~L~~~~-~~~~~~v~~---~g~v~~Lv~lL~~~~~-----~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~ 355 (644)
T 2z6h_A 285 GILSNLTCNN-YKNKMMVCQ---VGGIEALVRTVLRAGD-----REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355 (644)
T ss_dssp HHHHHHHTTC-HHHHHHHHH---TTHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHH
T ss_pred HHHHHHHcCC-HHHHHHHHH---cCCHHHHHHHHHccCC-----cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChH
Confidence 8888876643 222222221 1123333333332110 001112234555655432111001111 11 23455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhh--hh--hhhHHHHHHHHHH
Q 003155 547 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKR--FM--GITIGAILEEIQG 593 (843)
Q Consensus 547 ~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~--~~--~p~l~~l~~~l~~ 593 (843)
.+..++.. ..+..+.+.+|.+++.+...... .+ ...+|.+++.+..
T Consensus 356 ~L~~lL~~-~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 356 VVVKLLHP-PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHhCc-cCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 55555543 12457888999999887533111 11 1345666666554
No 67
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.50 E-value=10 Score=36.28 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=71.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|..+..++.+++.++. .+.++.++..+.. +++.+|..+++.+|++. .++ .++ .+...
T Consensus 61 ~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~-----~~~---~~~----~L~~~ 120 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG-----DER---AVE----PLIKA 120 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----CGG---GHH----HHHHH
T ss_pred CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC-----cHH---HHH----HHHHH
Confidence 4678888898999988864 3456666666542 47899999999999874 232 344 44444
Q ss_pred cCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 411 MSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 411 l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
+.++ ..|+..|+.++.++... ..+..+...+.. -+...|....++++.+
T Consensus 121 l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 121 LKDEDWFVRIAAAFALGEIGDE----------RAVEPLIKALKD-----EDGWVRQSAADALGEI 170 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 5544 34899999999888431 122333344431 1356788888888876
No 68
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=84.33 E-value=72 Score=37.57 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=83.3
Q ss_pred CCcchhhHHHHHHHHhhccCCCcc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 003155 332 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 406 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~~-----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~ 406 (843)
..-...++++-++..++.+ .... ...++.++..+.+ .++.++..++++++.++.-... .. ....+++.
T Consensus 331 ~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~--~~~~~~~~a~~~L~~L~~~~~~-~~---~~~~~i~~ 403 (780)
T 2z6g_A 331 TYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATK-QE---GMEGLLGT 403 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTC--SCHHHHHHHHHHHHHHHTTCTT-CS---CCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcC--CchHHHHHHHHHHHHHhccchh-hh---hhhhHHHH
Confidence 3445567888888888853 2221 2345555555542 3678888899999988764322 11 34667777
Q ss_pred HHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCH
Q 003155 407 LTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 480 (843)
Q Consensus 407 l~~~l~~~-~~v~~~A~~a~~~lc~~---c~~~l~--~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~ 480 (843)
|...++.+ .+++..|+.+|.+|+.. .+..+. .-++.+++.+...- -..+.+.....++|.+...-+.
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-------DREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccC-------CHHHHHHHHHHHHHHHHhcCch
Confidence 77777643 34999999999999863 233332 33556665554321 1236677788888888654443
No 69
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=80.61 E-value=18 Score=36.27 Aligned_cols=118 Identities=8% Similarity=0.061 Sum_probs=73.8
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|.-+.+++++++.++...+......++.++..+. .+++.||..+++.+|++.. +. .++.++..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~--d~~~~vR~~a~~aL~~~~~-----~~---~~~~L~~~---- 167 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF--DKSTNVRRATAFAISVIND-----KA---TIPLLINL---- 167 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT--CSCHHHHHHHHHHHHTC--------C---CHHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh--CCCHHHHHHHHHHHHhcCC-----HH---HHHHHHHH----
Confidence 5678888999999999986543222344455554443 2478999999999998753 33 45554443
Q ss_pred cCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHH
Q 003155 411 MSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 475 (843)
Q Consensus 411 l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi 475 (843)
+.++ ..|+..|+.++.++.. .-+..+..+...+.. -+...|.....++|.+-
T Consensus 168 l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 168 LKDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhC
Confidence 4443 3489999999987731 112344444555532 13567777888887653
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.68 E-value=14 Score=35.28 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|..+..++.+++.+++ .+.++.++..+.+ .++.+|..+++.+|++. .++ .++.++ ..
T Consensus 30 ~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~-----~~~---~~~~L~----~~ 89 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALKD--EDAWVRRAAADALGQIG-----DER---AVEPLI----KA 89 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC-----CGG---GHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC-----CHH---HHHHHH----HH
Confidence 5778889999999998765 3456777776653 37899999999999874 232 444444 44
Q ss_pred cCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 411 MSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 411 l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
+.++ ..++..|+.++.++... ..++.+ ...+.. -+...|....+++|.+
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~------~~~~~L----~~~l~d-----~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDE------RAVEPL----IKALKD-----EDWFVRIAAAFALGEI 139 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG------GGHHHH----HHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcH------HHHHHH----HHHHhC-----CCHHHHHHHHHHHHHc
Confidence 5544 34899999999887531 123333 344431 2467788888888876
No 71
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=78.60 E-value=24 Score=35.35 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccC--C-CCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK--L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 407 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~--l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l 407 (843)
+.++..+..++++++.++.. ...++.+++.|.+ + ..++.||..+++.+|++..- +|. +-+.+++.+
T Consensus 65 d~~~~vR~~A~~aL~~l~~~-----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~---~~~---~~~~~~~~L 133 (280)
T 1oyz_A 65 DKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKK---NPI---YSPKIVEQS 133 (280)
T ss_dssp CSSHHHHHHHHHHHHHSCCC-----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH---CGG---GHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---CCc---ccHHHHHHH
Confidence 46677888999999888642 1234445554421 1 24789999999999987642 232 455677777
Q ss_pred HhccCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHH
Q 003155 408 TSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 474 (843)
Q Consensus 408 ~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~v 474 (843)
...+.++ ..|+..|+.++.++... ..++.++. .+.. -+...|.....++|.+
T Consensus 134 ~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~----~l~d-----~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 134 QITAFDKSTNVRRATAFAISVINDK------ATIPLLIN----LLKD-----PNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHH----HHTC-----SSHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHH----HHcC-----CCHHHHHHHHHHHHhh
Confidence 7777665 34889999999887642 23444443 3331 1356788888888876
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.34 E-value=14 Score=34.94 Aligned_cols=110 Identities=12% Similarity=0.148 Sum_probs=73.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|..+..++.+++.+++ .+.++.++..+. ..++.+|..+++.+|++. .++ .++.++ ..
T Consensus 25 ~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~-----~~~---~~~~L~----~~ 84 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALK--DEDAWVRRAAADALGQIG-----DER---AVEPLI----KA 84 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC-----CGG---GHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhC-----CHH---HHHHHH----HH
Confidence 6789999999999998765 245677777764 247899999999999863 232 444444 44
Q ss_pred cCCC-HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHH
Q 003155 411 MSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 475 (843)
Q Consensus 411 l~~~-~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi 475 (843)
+.++ ..++..|+.++.++... ..++. +...+.. -+...|....+++|.+-
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~~------~~~~~----L~~~l~d-----~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGDE------RAVEP----LIKALKD-----EDWFVRIAAAFALGEIG 135 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG------GGHHH----HHHHTTC-----SSHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHhCcH------HHHHH----HHHHHcC-----CCHHHHHHHHHHHHHhC
Confidence 5443 34899999999887431 12333 3344432 14677888888888763
No 73
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=76.89 E-value=1.2e+02 Score=35.57 Aligned_cols=312 Identities=12% Similarity=0.062 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHhhcc---------CCCCCCCCChhhhHHhHhhhccc------cccCCCcchhhhhhchhhHHHHH
Q 003155 238 QVFRSAYESLVSLVSFRVQ---------YPQDYQDLSLEDLKEFKHTRYDL------ACCSSSTLTESVMLIAVADVLID 302 (843)
Q Consensus 238 ~~~~~~~~~L~~~l~~k~~---------~p~d~~~~~~e~~e~f~~~R~~~------~~~~~~~~~~~~~~~~~~d~l~~ 302 (843)
.....++..|+....+|.. .|++ -.+.+++.+.|-+-=..+ ++.+ ........+++.
T Consensus 294 ~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~-~~Lt~~~~~~fV~~l~p~~~~g~fSK~~-------~~~~~~~~~l~~ 365 (799)
T 1vsy_4 294 KPNAKFVHAFIKSYHGRVKYEEDICARGVTNG-ICLTSFCHEEIVEIFLNIISLGSQNKNP-------DIANYYISCFAY 365 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCS-SSCCHHHHHHHHHHHHHHHHHHHTCSSH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCchh-hcCCHHHHHHHHHHHHHHHHHHhCcCCc-------chHHHHHHHHHH
Confidence 3445556666666666543 4444 234666677764321110 0110 001114456777
Q ss_pred HhhhcCh---hHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCcc--ccchHHHhhh-ccCCC-CcHHH
Q 003155 303 AASVLGG---DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMAL-LPKLP-QQPQL 375 (843)
Q Consensus 303 ~~~vl~~---~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~--~~~l~~l~~~-l~~lp-~~~~v 375 (843)
.+.+ .| +.+++.+.+.+...+.. + --..=+++-++|-++.+++..+.... ..++..++.. |+.+. .++.-
T Consensus 366 La~l-~P~~~~lVlP~vL~r~y~sLe~-~-~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~K 442 (799)
T 1vsy_4 366 LLEL-DPSNAYLIYDKILIDLYDTLAD-Q-FINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNL 442 (799)
T ss_dssp HHHT-CCTTHHHHHHHHHHHHHHHHTT-T-TTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHH
T ss_pred HHhc-CCCccceehHHHHHHHHHHhcc-c-cccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHH
Confidence 6654 45 67888877777766632 0 01345578888999988887665432 2345555544 45553 34555
Q ss_pred HHHHHHHHHhhHHHHhh----------------------CC--------------C--------------CchhHHHHHH
Q 003155 376 LQTVCLTIGAYSKWFDA----------------------AS--------------S--------------DPSILASVLS 405 (843)
Q Consensus 376 ~~t~~~~ig~y~~~l~~----------------------~p--------------~--------------~~~~l~~vl~ 405 (843)
...++.+++..+.++.- |. + ..+++...+.
T Consensus 443 T~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~d 522 (799)
T 1vsy_4 443 TSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVE 522 (799)
T ss_dssp HHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55556666555443321 10 0 0012333333
Q ss_pred HHHhccCC-C-HHHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHhhcccCCCCCChhhHHHH----HHHHHHHHhcC
Q 003155 406 ILTSGMST-S-EDTAAAAALAFRHICDDCRKKLCGY-LDGLYNVYRTAVNGEGSLKVSAEDSLHL----VEALSMVITEL 478 (843)
Q Consensus 406 ~l~~~l~~-~-~~v~~~A~~a~~~lc~~c~~~l~~~-~~~li~~~~~~~~~~~~~~l~~~~~~~l----~eaig~vi~~~ 478 (843)
.++..+.+ . +.+...-..++..++..|.+.+... +..+.+.+.+.... + ..+....+ +.|++.. -
T Consensus 523 rvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~----~-a~~~v~~L~~~~~~a~~~~---~ 594 (799)
T 1vsy_4 523 KIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSF----K-EKDPNYELVTIPLAALVRR---N 594 (799)
T ss_dssp HHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCC----C-SSSCCTHHHHHHHHHHHHH---C
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhh----h-HHHHHHHHHHHHHHHHHHh---C
Confidence 33333332 1 2355566667777888777765433 23333322222211 1 01112222 3444433 3
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhcCCcc---ccccCchh--hHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHH
Q 003155 479 PQVDAKKALEMLCLPVVTPLQEIINQGPEI---LQKKHPRD--LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD 553 (843)
Q Consensus 479 p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~---~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~ 553 (843)
| + . +..++..++.++...+..+..+ ..+..++| +.-.+..|+.+++..+ ..++.+-+++..++..++.
T Consensus 595 P-~-~---~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g--~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 595 N-G-L---SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCH--ESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp G-G-G---HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTG--GGGGTTHHHHHHHHHHHHH
T ss_pred H-H-H---HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCc--HHHHccHHHHHHHHHHHHH
Confidence 3 3 2 4455555566665444333111 11112233 4445888999888643 3455677888888887765
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhh
Q 003155 554 IRAWDMRTMESLCRACKYAVRTS 576 (843)
Q Consensus 554 ~~~~~~~i~e~~~~~l~~~i~~~ 576 (843)
+. .+..+...+|.++++++.++
T Consensus 668 ~~-k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 668 NV-TNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp SC-CCHHHHHHHTTHHHHHHHHH
T ss_pred Hh-cCcchHHHHHHHHHHHHHHh
Confidence 32 23444566777777776553
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=74.73 E-value=1.2e+02 Score=34.47 Aligned_cols=129 Identities=8% Similarity=0.010 Sum_probs=74.3
Q ss_pred CCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhcc
Q 003155 332 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 411 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l 411 (843)
....+.++..-.++...-|- +.+...+.++..+.+ .+...++.+-..++.|+ ..+|+ .+.-+++.+.+.+
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~--d~s~~~~~vvkl~~s--~~~~~Krl~YL~l~~~~---~~~~e---~~~L~iN~l~kDl 120 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGH--DIDFGHMEAVNLLSS--NRYTEKQIGYLFISVLV---NSNSE---LIRLINNAIKNDL 120 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSC--CCCSCHHHHHHGGGC--SCHHHHHHHHHHHHHSC---CCCHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC--CCchhHHHHHHHhcC--CCHHHHHHHHHHHHHHc---cCCcH---HHHHHHHHHHHhc
Confidence 34556666655555443332 223456667765543 35677777777777775 33443 6777778888888
Q ss_pred CCCHH-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 412 STSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 412 ~~~~~-v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
.+++. ++.. |++.+|.=+...+. +.++..+...+... .-+...|.+.+-|+..+...-|
T Consensus 121 ~~~n~~ir~l---ALr~L~~i~~~e~~---~~l~~~v~~~l~~~---d~~~~VRK~A~~al~kl~~~~p 180 (621)
T 2vgl_A 121 ASRNPTFMGL---ALHCIANVGSREMA---EAFAGEIPKILVAG---DTMDSVKQSAALCLLRLYRTSP 180 (621)
T ss_dssp HSCCHHHHHH---HHHHHHHHCCHHHH---HHHTTHHHHHHHCS---SSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCHHHHHH---HHHHhhccCCHHHH---HHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHhCh
Confidence 76642 4444 44444443334433 34444445555211 1246788888888888887654
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=67.82 E-value=6.2 Score=34.70 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.+|.-+..++++++.+++ ...++.++..+. .+++.||..+++.+|++. .+ ..++.|...
T Consensus 53 d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~-----~~-------~a~~~L~~~ 112 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLE--DDSGFVRSGAARSLEQIG-----GE-------RVRAAMEKL 112 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHC-----SH-------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC-----cH-------HHHHHHHHH
Confidence 5778888999999988764 234555555553 247899999999999864 12 234444444
Q ss_pred cCCC-HHHHHHHHHHHHH
Q 003155 411 MSTS-EDTAAAAALAFRH 427 (843)
Q Consensus 411 l~~~-~~v~~~A~~a~~~ 427 (843)
+.++ ..|+..|+.|+.+
T Consensus 113 l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 113 AETGTGFARKVAVNYLET 130 (131)
T ss_dssp TTSCCTHHHHHHHHHGGG
T ss_pred HhCCCHHHHHHHHHHHHh
Confidence 4433 2388888888754
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=67.18 E-value=16 Score=40.19 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHH
Q 003155 332 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLS 405 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~vl~ 405 (843)
.+-.-.+.+.++++.++..-++. +...+|.++..|..- .++.++..++++++..+.. ++.. ......++
T Consensus 56 ~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~----~~~~~~i~~g~i~ 130 (457)
T 1xm9_A 56 PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST----DELKEELIADALP 130 (457)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS----SSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC----HHhHHHHHhccHH
Confidence 34455689999999998752222 245678888887632 3789999999999988753 3322 23446666
Q ss_pred HHHhccC--------C---------CHHHHHHHHHHHHHHHHH--hhhhhc---CCHHHHHHHHHHh
Q 003155 406 ILTSGMS--------T---------SEDTAAAAALAFRHICDD--CRKKLC---GYLDGLYNVYRTA 450 (843)
Q Consensus 406 ~l~~~l~--------~---------~~~v~~~A~~a~~~lc~~--c~~~l~---~~~~~li~~~~~~ 450 (843)
.|...+. . ..++...|++++.++|.. ++..+. +-++.|+..+..-
T Consensus 131 ~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 131 VLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp HHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 6666661 1 123667999999999953 445555 4477777776653
No 77
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=66.60 E-value=26 Score=34.48 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhh
Q 003155 318 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA 392 (843)
Q Consensus 318 ~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~ 392 (843)
+.|.+.+. ..+-.-.|.+.++++.++.+-++. +...+|.++..|.+-+ +..++..+..++...+.
T Consensus 55 p~LV~lL~-----s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~---- 124 (233)
T 3tt9_A 55 LKLLQLLK-----VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSS---- 124 (233)
T ss_dssp HHHHHGGG-----CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHc----
Confidence 34555553 344566789999999998753322 2356777887775322 56677777655555442
Q ss_pred CCCCc-hhHHHHHHHHHh-------ccC----------CCHHHHHHHHHHHHHHHH---HhhhhhcC---CHHHHHHHHH
Q 003155 393 ASSDP-SILASVLSILTS-------GMS----------TSEDTAAAAALAFRHICD---DCRKKLCG---YLDGLYNVYR 448 (843)
Q Consensus 393 ~p~~~-~~l~~vl~~l~~-------~l~----------~~~~v~~~A~~a~~~lc~---~c~~~l~~---~~~~li~~~~ 448 (843)
++++. ......++.|.. |.. ...++...|+.++++++. +.|+.+.. -++.++..++
T Consensus 125 ~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204 (233)
T ss_dssp SGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHH
T ss_pred ChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHH
Confidence 22211 233444554443 221 012489999999999973 66777753 3688888887
Q ss_pred HhhcccCCCCCChhhHHHHHHHHH
Q 003155 449 TAVNGEGSLKVSAEDSLHLVEALS 472 (843)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~l~eaig 472 (843)
.....+ +.+.+.+...+-++-
T Consensus 205 ~~~~~~---~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 205 GTIADY---QPDDKATENCVCILH 225 (233)
T ss_dssp HHHHTT---CTTCHHHHHHHHHHH
T ss_pred hhhhcc---cchhHHHHHHHHHHH
Confidence 766431 334455555554443
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=64.58 E-value=19 Score=33.78 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=71.4
Q ss_pred HHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCHH-HH
Q 003155 340 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TA 418 (843)
Q Consensus 340 ~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~~~-v~ 418 (843)
.-|+++-|+..-+.........++.++. +.+..=+.+++.+||...+ +|+. |..+.++-++.-+++.++ |+
T Consensus 127 ~~yaLeeIaranP~l~~~v~rdi~smlt--skd~~Dkl~aLnFi~alGe---n~~~---yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 127 VSYALEEIAKANPMLMASIVRDFMSMLS--SKNREDKLTALNFIEAMGE---NSFK---YVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTS--CSSHHHHHHHHHHHHTCCT---TTHH---HHGGGHHHHHGGGGCSSHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhc---cCcc---ccCcchHHHHHHHcCcchhhh
Confidence 4466666665533221222233333444 2356667888888887653 2443 666677777777876543 78
Q ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 419 AAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 419 ~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
.+|..++.+++....+ +-+- +...+...- +-+...+..+-||+|.++-.
T Consensus 199 aSaVEtL~~lA~~npk-lRki---i~~kl~e~~------D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 199 ASAVEALVHLATLNDK-LRKV---VIKRLEELN------DTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHHHTSCHH-HHHH---HHHHHHHCC------CSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCHH-HHHH---HHHHHHHhc------CcHHHHHHHHHHHHHHHHHH
Confidence 8999999999865443 2222 222233321 23567888899999987754
No 79
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=63.46 E-value=1.1e+02 Score=29.39 Aligned_cols=232 Identities=12% Similarity=0.068 Sum_probs=112.6
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCC
Q 003155 404 LSILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 479 (843)
Q Consensus 404 l~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~---~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p 479 (843)
++.+.+.+.++ .+++..|+.++.+++.... ..+.. ...+..+...+..+ +.+.+.....+++.+...-+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD--AGGVEVLVKLLTST-----DSEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCCh
Confidence 34444555433 3489999999999986533 22221 12344444555421 36677888888888876532
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHH-HHHHHHHHHHHhhcCC
Q 003155 480 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWD 558 (843)
Q Consensus 480 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~il~~~~~~ 558 (843)
. ......+ ...+..+.+++.... ..-....+..|+.+... .++......+ ..+|.+..++. ..+
T Consensus 77 ~-~~~~~~~---~~~i~~l~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~l~--~~~ 141 (252)
T 4hxt_A 77 E-AIKAIVD---AGGVEVLVKLLTSTD-------SEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLT--STD 141 (252)
T ss_dssp H-HHHHHHH---TTHHHHHHHHTTCSS-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTT--CSC
T ss_pred H-HHHHHHH---CCCHHHHHHHHcCCC-------HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHc--CCC
Confidence 2 2221111 122333444443221 11112234555555532 1221111222 35565555554 346
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---h--hhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHH-HHH
Q 003155 559 MRTMESLCRACKYAVRTSKRF---M--GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-ALF 632 (843)
Q Consensus 559 ~~i~e~~~~~l~~~i~~~~~~---~--~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~-~l~ 632 (843)
..+...++.++.++....... + ...+|.+++. +. .+.+....-+...+..+... ..+....+.. ..+
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----l~-~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i 214 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL----LT-STDSEVQKEAARALANIASG--PTSAIKAIVDAGGV 214 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH----TT-CSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH----HC-CCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCH
Confidence 788899999999876432211 1 1233434333 33 23333333333334444332 1112222221 122
Q ss_pred HHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCc
Q 003155 633 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQL 669 (843)
Q Consensus 633 ~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~ 669 (843)
.....+++ ..++++++.-...+..+..+.+..
T Consensus 215 ~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 215 EVLQKLLT-----STDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHGGG-----CSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHC-----CCcHHHHHHHHHHHHHHHcCCCcc
Confidence 33334443 246788888888888888766554
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=62.54 E-value=55 Score=34.36 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=82.5
Q ss_pred CCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCc--HHHHHHHHHHHHhhHHHHhhCCCCchhH--H
Q 003155 332 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 401 (843)
Q Consensus 332 ~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~--~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~ 401 (843)
.+....|.++.+++.++...+.. ....++.++..|.+-.+. ..++..+++++...+.++..++++.+.+ .
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 45677888888999888744332 234566677766542221 2588888888888776554444311111 1
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHH---HhhhhhcC--CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHH
Q 003155 402 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCG--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 475 (843)
Q Consensus 402 ~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~---~c~~~l~~--~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi 475 (843)
..++.|...|.++ .+++..|+.++.+++. +.+..+.. -++.|+ +++.. -+.+.+.....++..+.
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv----~LL~s-----~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK----NLIHS-----KHKMIAMGSAAALRNLM 333 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH----TTTTC-----SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH----HHHhC-----CCHHHHHHHHHHHHHHH
Confidence 2345555555543 3589999999999983 33334432 233333 44432 13455677777777777
Q ss_pred hcCCH
Q 003155 476 TELPQ 480 (843)
Q Consensus 476 ~~~p~ 480 (843)
..-|.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 76544
No 81
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=55.64 E-value=1.3e+02 Score=30.01 Aligned_cols=137 Identities=9% Similarity=0.043 Sum_probs=86.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCCcc------ccchHHHhhhcc-C-CC-CcHHHHHHHHHHHHhhHHHHhhCCCCchhHH
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVE------AEVMPQVMALLP-K-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILA 401 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~------~~~l~~l~~~l~-~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~ 401 (843)
+.+-.-.+.++-++..+++.+.... ...+..+++.|. . +. ..+.++..++.++-.+.+ . .. ...
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~---~-~~---~~~ 138 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG---L-DT---SIT 138 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---T-SS---SSH
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH---h-cC---cHH
Confidence 5667778899999999988765432 122333444332 1 32 357888888888766543 1 11 245
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhc---CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhc
Q 003155 402 SVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC---GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 402 ~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~~~l~---~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~ 477 (843)
.++..+..++.+. .++...+...+.++.++...... +.++.++..+...+.. -+.+.|....+.++.+-..
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d-----~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH-----GDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC-----SSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHH
Confidence 6778888888653 34888888888888877554333 3456666666666642 2467888888888877766
Q ss_pred CC
Q 003155 478 LP 479 (843)
Q Consensus 478 ~p 479 (843)
+.
T Consensus 214 ~G 215 (278)
T 4ffb_C 214 TG 215 (278)
T ss_dssp --
T ss_pred hC
Confidence 53
No 82
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=54.14 E-value=1.5e+02 Score=28.07 Aligned_cols=129 Identities=8% Similarity=0.039 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCccccchHHHhhhcc------CCCCcHHHHHHHHHHH
Q 003155 310 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP------KLPQQPQLLQTVCLTI 383 (843)
Q Consensus 310 ~~~l~~l~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~------~lp~~~~v~~t~~~~i 383 (843)
..+++.+.+.+.+.+.. + -.++..+...+-...|+.+.-.-.-++++.++++.+. +++ ...+|.-+..++
T Consensus 39 ~~LlPyf~~fI~~~v~~--n-l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~-~~~LRd~AA~lL 114 (196)
T 4atg_A 39 QQLVPYFIQHISELILK--S-FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIV-DDDVRKMSADIV 114 (196)
T ss_dssp TTTHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh--c-cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHH
Confidence 45666666666665543 1 3478888888888888887765555777777777642 233 238999999999
Q ss_pred HhhHHHHhh-CCCCchhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHHhhhh-hcCCHHHHHH
Q 003155 384 GAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCRKK-LCGYLDGLYN 445 (843)
Q Consensus 384 g~y~~~l~~-~p~~~~~l~~vl~~l~~~l~~~~---~v~~~A~~a~~~lc~~c~~~-l~~~~~~li~ 445 (843)
+..++-+.. +|. .-+.++..+.+.+.+|. ....-|-..+..+-.+.-.. +.|.++.+.+
T Consensus 115 ~~I~~~~~~~y~~---L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 115 KYIYDTYSRSYKT---LAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHHHHHTTTSTT---HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhCccCch---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHH
Confidence 999886654 354 77888888888887653 24456666666666554443 4477766553
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.13 E-value=2.4e+02 Score=33.69 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 003155 335 RPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 414 (843)
Q Consensus 335 ~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~ 414 (843)
.-+.+++.+++-|+-+= .+.++.++..+.+- .+|.+|+.+...+|..+ ..+|. +.++..|.+..+++
T Consensus 593 ~VRraAViaLGlI~~g~----~e~v~rlv~~L~~~-~d~~VR~gAalALGli~---aGn~~-----~~aid~L~~L~~D~ 659 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRD----YTTVPRIVQLLSKS-HNAHVRCGTAFALGIAC---AGKGL-----QSAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHHHHHHHHTSSS----CSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHT---SSSCC-----HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhccCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhc---cCCCc-----HHHHHHHHHHccCC
Confidence 34567888888765442 24678888777653 36899999999999765 22442 56777666666665
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhc
Q 003155 415 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 452 (843)
Q Consensus 415 ~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~ 452 (843)
. .|+..|..|+-.+-........|.+..+...+.....
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 3 4889999999988877777777888888888777764
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=51.81 E-value=63 Score=35.31 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=83.0
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCc--HHHHHHHHHHHHhhHHHHhhCCCCchhH--
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL-- 400 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~--~~v~~t~~~~ig~y~~~l~~~p~~~~~l-- 400 (843)
+.+....+.++-+++.++...+.. ....++.++..|.+-.+. ..++..+++++...+.++..++++.+.+
T Consensus 298 s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 377 (458)
T 3nmz_A 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377 (458)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 346677888888888888744322 234566677666543222 2588888999888876655454321111
Q ss_pred HHHHHHHHhccCCC-HHHHHHHHHHHHHHHH---HhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHh
Q 003155 401 ASVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 401 ~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~---~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~ 476 (843)
...++.|...|.++ .+++..|+.++.+++. +.+..+... ..+..+.+++..+ +.+.+.....++..+..
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~Lv~LL~s~-----~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSK-----HKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHHHTTTTCS-----SHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHc
Confidence 12345566666543 3599999999999993 333333311 1233333444321 34556667777777776
Q ss_pred cCC
Q 003155 477 ELP 479 (843)
Q Consensus 477 ~~p 479 (843)
.-|
T Consensus 451 ~~p 453 (458)
T 3nmz_A 451 NRP 453 (458)
T ss_dssp CCS
T ss_pred CCH
Confidence 543
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=51.55 E-value=93 Score=33.93 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHH
Q 003155 317 YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 390 (843)
Q Consensus 317 ~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l 390 (843)
.+.|.+.+. ..+=.-.|.++++++.++.+-+.+ +...++.++..|.+-+ ++.++..++.+++..+..-
T Consensus 245 Ip~LV~LL~-----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~ 318 (458)
T 3nmz_A 245 MRALVAQLK-----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHC 318 (458)
T ss_dssp HHHHHHGGG-----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh-----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC
Confidence 344555543 234456789999999998752211 2345777777665433 5677777777777766521
Q ss_pred hhCCCCchhH--HHHHHHHHhccCCCH-----HHHHHHHHHHHHHHH------Hhhhhhc--CCHHHHHHHHHHhhcccC
Q 003155 391 DAASSDPSIL--ASVLSILTSGMSTSE-----DTAAAAALAFRHICD------DCRKKLC--GYLDGLYNVYRTAVNGEG 455 (843)
Q Consensus 391 ~~~p~~~~~l--~~vl~~l~~~l~~~~-----~v~~~A~~a~~~lc~------~c~~~l~--~~~~~li~~~~~~~~~~~ 455 (843)
..+.. ++. ...++.|...+..+. ++...|+.++++++. +.+..+. +-++.++ .++..+
T Consensus 319 ~~nk~--~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv----~LL~~~- 391 (458)
T 3nmz_A 319 TENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL----QHLKSH- 391 (458)
T ss_dssp HHHHH--HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH----HHSSCS-
T ss_pred HHHHH--HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH----HHHcCC-
Confidence 11100 111 234555555454321 388999999999985 2223332 2344444 444321
Q ss_pred CCCCChhhHHHHHHHHHHHHhc
Q 003155 456 SLKVSAEDSLHLVEALSMVITE 477 (843)
Q Consensus 456 ~~~l~~~~~~~l~eaig~vi~~ 477 (843)
+.+.+.....+++.+...
T Consensus 392 ----~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 392 ----SLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp ----CHHHHHHHHHHHHHHHSS
T ss_pred ----ChHHHHHHHHHHHHHHcC
Confidence 345666777777777643
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=49.41 E-value=1.5e+02 Score=29.38 Aligned_cols=188 Identities=9% Similarity=0.004 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHH
Q 003155 460 SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD 539 (843)
Q Consensus 460 ~~~~~~~l~eaig~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 539 (843)
....|...++.+..++...+.+.........+......+...+.... .......++++..++..++.......
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-------~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-------VVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-------HHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 36789999999999888765543222211122222233444443211 11223347778887776543211111
Q ss_pred HHH-HHHHHHHHHHHhh-c-CCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhc-C--CchHhHHHHHHHHH
Q 003155 540 AIQ-RLWPIFKAIFDIR-A-WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH-Q--QPCFLYLSSEVIKI 613 (843)
Q Consensus 540 ~~~-~~~~~l~~il~~~-~-~~~~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~-~--~~~~L~l~~~li~~ 613 (843)
... .+-.++..++++. . ....+++.+..++-..+..... ...+++.+...++.. + ....+.++..++..
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 111 1222333444442 2 3455667766666555432211 122334444333321 1 23567788889999
Q ss_pred hCCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCC
Q 003155 614 FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP 667 (843)
Q Consensus 614 fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p 667 (843)
||.... . ....+..+.......+. +.+|+++..-..++..+.+...
T Consensus 170 fg~~~~-~--~k~~l~~i~~~l~k~l~-----d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 170 FGLTNV-N--VQTFLPELLKHVPQLAG-----HGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HTTTTC-C--HHHHHHHHGGGHHHHHT-----CSSHHHHHHHHHHHHHHHTC--
T ss_pred hCCCcC-C--chhHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHhC
Confidence 996521 1 11222222222233333 4679999999999988877543
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=46.99 E-value=98 Score=32.38 Aligned_cols=143 Identities=14% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHH
Q 003155 317 YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 390 (843)
Q Consensus 317 ~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l 390 (843)
.+.|.+.+. ..+-.-.|.+.++++.++..-+.+ +...+|.++..|.+-+ ++.++..++.+++..+..-
T Consensus 129 Ip~LV~LL~-----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 129 MRALVAQLK-----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHHHHHGGG-----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHC-----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccC
Confidence 344555543 344456789999999998752211 2345777777654322 5677777777777665411
Q ss_pred hhCCCCchhH--HHHHHHHHhccCCCH-----HHHHHHHHHHHHHHH------Hhhhhhc--CCHHHHHHHHHHhhcccC
Q 003155 391 DAASSDPSIL--ASVLSILTSGMSTSE-----DTAAAAALAFRHICD------DCRKKLC--GYLDGLYNVYRTAVNGEG 455 (843)
Q Consensus 391 ~~~p~~~~~l--~~vl~~l~~~l~~~~-----~v~~~A~~a~~~lc~------~c~~~l~--~~~~~li~~~~~~~~~~~ 455 (843)
..+.. ... ...++.|.+.+..+. ++...|+.++++++. +.+..+. +-++.+++ ++..+
T Consensus 203 ~~nk~--~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~----lL~~~- 275 (354)
T 3nmw_A 203 TENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ----HLKSH- 275 (354)
T ss_dssp HHHHH--HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH----HTTCS-
T ss_pred hhhhH--HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH----HHcCC-
Confidence 11100 111 245555555554321 388999999999985 2333333 23444443 44321
Q ss_pred CCCCChhhHHHHHHHHHHHHh
Q 003155 456 SLKVSAEDSLHLVEALSMVIT 476 (843)
Q Consensus 456 ~~~l~~~~~~~l~eaig~vi~ 476 (843)
+.+.+.....+++.+..
T Consensus 276 ----~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 276 ----SLTIVSNACGTLWNLSA 292 (354)
T ss_dssp ----CHHHHHHHHHHHHHHTS
T ss_pred ----ChHHHHHHHHHHHHHhC
Confidence 24556666666666653
No 88
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=46.16 E-value=4.2e+02 Score=31.04 Aligned_cols=449 Identities=12% Similarity=0.070 Sum_probs=218.8
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHHhhhccCCCCCccCcHhHHHHHHH-HHHhhHHHHhhccCCHHHHHHHHHHHHH
Q 003155 87 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP-QIMSLKAHLTDSSKDEEDVKAIARLFAD 165 (843)
Q Consensus 87 ~~ll~~~~~~L~~~~~~~~A~~~l~eii~~~~~~~~~~~~~~~~li~~l~~-~~~~l~~~l~~~~~d~~~~~~l~~l~~~ 165 (843)
+.++..+|..=.+.+-++.|+.=+.-+..+.. + -+.++. ........+.+..+|+|..-...|++.+
T Consensus 9 ~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~a----g--------a~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~ 76 (810)
T 3now_A 9 KQMMDLTFDLATPIDKRRAAANNLVVLAKEQT----G--------AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAA 76 (810)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHH----H--------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccCHHHHHHHHhhceeeecccc----c--------hHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 45677777633345666766655544443311 0 111221 1122222333344778888899999999
Q ss_pred HhhHHHHHHHcCCchHHH-HHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccc-hHHHHHHHHHHHHHH
Q 003155 166 MGDSYVELIATGSDESML-IVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEAS-AEAERSRRLQVFRSA 243 (843)
Q Consensus 166 ~~e~~~~~l~~~~~~~~~-ll~~ll~~~~~~~~~vs~~~~~FW~~l~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~ 243 (843)
++..+...... -... -.+.++.....++++++.-+..+.....+.+...++....++++. .++. ......+
T Consensus 77 ~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 149 (810)
T 3now_A 77 LCENSVERTKG---VLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRN----NREIDTL 149 (810)
T ss_dssp HHTTCHHHHHH---HHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHT----HHHHHHH
T ss_pred HHhccHHHHHH---HHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhh----hhHHHHH
Confidence 99887533321 0000 134455555568888888888888888777764322111111111 0111 1112222
Q ss_pred HHHH-----------------HHHHHhhccCCCCCCCCChhhhHHhHhhh---ccccccC-----------CCcchhhhh
Q 003155 244 YESL-----------------VSLVSFRVQYPQDYQDLSLEDLKEFKHTR---YDLACCS-----------SSTLTESVM 292 (843)
Q Consensus 244 ~~~L-----------------~~~l~~k~~~p~d~~~~~~e~~e~f~~~R---~~~~~~~-----------~~~~~~~~~ 292 (843)
+..| ++.+++...+.+ . .| .+.|..-| +-+..++ .-|.+-|..
T Consensus 150 ~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~-~~----~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~ 223 (810)
T 3now_A 150 LTCLVYSITDRTISGAARDGVIELITRNVHYTA-L-EW----AERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTI 223 (810)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTT-T-TH----HHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHH
T ss_pred HHHHHHHhhccccChhhHHHHHHHHHHhCCccc-c-cc----ccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHH
Confidence 2222 223333332221 0 00 01121100 0000000 111122211
Q ss_pred hchhhHHHHHHhhhcChhH----HHHHHHHHHHHHHhhCCCCCCCcc-hhhHHHHHHHHhhccCCCcc------ccchHH
Q 003155 293 LIAVADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHNEWR-PAEAALFCIRAISTYVSVVE------AEVMPQ 361 (843)
Q Consensus 293 ~~~~~d~l~~~~~vl~~~~----~l~~l~~~l~~~l~~~~~~~~~W~-~~Ea~L~~l~~iae~~~~~~------~~~l~~ 361 (843)
+.=++..+|.-++.|. +-+.+.+.+...+. ..+-. .+. +.+++.++..+..... +..++.
T Consensus 224 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-a~~alt~i~~g~~~~~~~~~~~~G~v~~ 294 (810)
T 3now_A 224 ---ASVCLARIYENMYYDEAKARFTDQIDEYIKDKLL-----APDMESKVR-VTVAITALLNGPLDVGNQVVAREGILQM 294 (810)
T ss_dssp ---HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHS-----SCCHHHHHH-HHHHHHHHHSSSHHHHHHHHHTTTHHHH
T ss_pred ---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhc-----cCChHhHHH-HHHHHHHHhcCCHHHHHHHHhccchHHH
Confidence 3334555666565322 22222222322221 12222 233 4778888887766542 355677
Q ss_pred HhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhh-----hh
Q 003155 362 VMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR-----KK 435 (843)
Q Consensus 362 l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~-~~v~~~A~~a~~~lc~~c~-----~~ 435 (843)
++.++.+ +++.++..+++++|..+.--..+ + .....-++.|...+... ..++..|+.++.++..... +.
T Consensus 295 li~Ll~s--~~~~~q~~A~~al~~aa~~~~~R-~--~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 295 ILAMATT--DDELQQRVACECLIAASSKKDKA-K--ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHS--SCHHHHHHHHHHHHHHTTSHHHH-H--TTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred HHHHhCC--CCHHHHHHHHHHHHHHcCCcHHH-H--HHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 7766654 37899999999999865431111 1 12222235665555433 3488888888888874321 22
Q ss_pred hc-CCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHH--HHhhhHHHHHHHHHHhcCCcccccc
Q 003155 436 LC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--EMLCLPVVTPLQEIINQGPEILQKK 512 (843)
Q Consensus 436 l~-~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l--~~l~~p~~~~l~~~~~~~~~~~~~~ 512 (843)
+. .-+..++..+...+..+ ..+.+.+...++|++++... ++.+.... ...+.++++-+ .....
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~---~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL----~s~d~----- 435 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKP---GKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLA----RGGNQ----- 435 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCS---SCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHH----HTTCG-----
T ss_pred hhhccHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHh----CCCCh-----
Confidence 22 22677888888887642 12457889999999999664 22222222 23444444333 32211
Q ss_pred CchhhHHHHHHHHHhhhccC--------------------Ccch------H----HHHHH-HHHHHHHHHHHhhcCCHHH
Q 003155 513 HPRDLTVHIDRFAYIFRYVN--------------------HPEA------V----ADAIQ-RLWPIFKAIFDIRAWDMRT 561 (843)
Q Consensus 513 ~~~~~~~~l~~l~~~~~~~~--------------------~~~~------~----~~~~~-~~~~~l~~il~~~~~~~~i 561 (843)
.-....+..|+.+..+.. .+++ . ..+++ ...|.+..++.. .++.+
T Consensus 436 --~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~v 511 (810)
T 3now_A 436 --SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNS 511 (810)
T ss_dssp --GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHH
T ss_pred --HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHH
Confidence 011222445555544321 0011 0 11222 456777777753 56889
Q ss_pred HHHHHHHHHHHHHh--hhhhh--hhhHHHHHHHHH
Q 003155 562 MESLCRACKYAVRT--SKRFM--GITIGAILEEIQ 592 (843)
Q Consensus 562 ~e~~~~~l~~~i~~--~~~~~--~p~l~~l~~~l~ 592 (843)
.+.+++++..+... ....+ ...+|+++..+.
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~ 546 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 99999999988532 11112 123566666654
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=45.67 E-value=50 Score=36.79 Aligned_cols=109 Identities=11% Similarity=0.216 Sum_probs=66.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCCc-------cccchHHHhhhc--cCC----CC--cHHHHHHHHHHHHhhHHHHhhCCC
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVV-------EAEVMPQVMALL--PKL----PQ--QPQLLQTVCLTIGAYSKWFDAASS 395 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~-------~~~~l~~l~~~l--~~l----p~--~~~v~~t~~~~ig~y~~~l~~~p~ 395 (843)
++.|+.+..|..+++.|...-... +.+...+++-.+ =++ .+ -..||.|+..++|.. ..+...
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS--
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh--
Confidence 688999999999999886543311 123333333332 122 22 368999999999996 443321
Q ss_pred CchhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhc
Q 003155 396 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 452 (843)
Q Consensus 396 ~~~~l~~vl~~l~~~l~~~~-~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~ 452 (843)
-.++..++.++..+. .++-.+--.++.+ ..+...++.+++.+..-+.
T Consensus 262 -----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 262 -----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLS 309 (800)
T ss_dssp -----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcC
Confidence 134444445555552 3777777888877 3344448888887776664
No 90
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=41.47 E-value=4.2e+02 Score=29.69 Aligned_cols=370 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHhhccCCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhHH---
Q 003155 317 YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--- 388 (843)
Q Consensus 317 ~~~l~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~--- 388 (843)
.+.+.+.+. ..+-...+.+..++..++..-... +...+|.++..|.+ .++.++..++++++..+.
T Consensus 50 i~~LV~~L~-----s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 50 LPEVIAMLG-----FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH--PKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp HHHHHHHTT-----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHC-----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC--CCHHHHHHHHHHHHHHHccCC
Q ss_pred -----HHhhCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--HHhhhhhc-CCHHHHHHHHHHhhcccCCCCC-
Q 003155 389 -----WFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC--DDCRKKLC-GYLDGLYNVYRTAVNGEGSLKV- 459 (843)
Q Consensus 389 -----~l~~~p~~~~~l~~vl~~l~~~l~~~~~v~~~A~~a~~~lc--~~c~~~l~-~~~~~li~~~~~~~~~~~~~~l- 459 (843)
-+..+- -++.++.+|.+. .+.. ++..|+.++.+|+ .+.+..++ .-++.|++.+..-..+-.....
T Consensus 123 ~~nk~~I~~~G----aIp~LV~LL~s~-~~~~-~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 123 QDNKIAIKNCD----GVPALVRLLRKA-RDMD-LTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHC-CSHH-HHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC-----
T ss_pred HHHHHHHHHcC----CHHHHHHHHcCC-CCHH-HHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccc
Q ss_pred --------ChhhHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhc
Q 003155 460 --------SAEDSLHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 530 (843)
Q Consensus 460 --------~~~~~~~l~eaig~vi~~~p~-~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 530 (843)
..+.+.....++..+.+.-+. -+...-...++.+++.-++..+..... ..+.....+..|..+...
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~-----~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS-----DSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCC-----SCHHHHHHHHHHHHHHTT
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCc-----cHHHHHHHHHHHHHhhcc
Q ss_pred -----------------------cCCcchHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhhhhh------
Q 003155 531 -----------------------VNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM------ 580 (843)
Q Consensus 531 -----------------------~~~~~~~~~~~~-~~~~~l~~il~~~~~~~~i~e~~~~~l~~~i~~~~~~~------ 580 (843)
...+..+...++ ...+.+..++.. ..+..+.|.++.++.+....-+...
T Consensus 272 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~-s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 272 VHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE-SKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp HHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred ccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Q ss_pred ---hhhHHHHHHHHHHHHhhcCCchHhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhhcccccCCc-----CCchH
Q 003155 581 ---GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTS-----RPDVA 652 (843)
Q Consensus 581 ---~p~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~fg~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~-----~pD~~ 652 (843)
..-+|.++..+ ..+....+.-+...+.-...++.....+. ...+....++|. ..-.. ..|++
T Consensus 351 v~~~~glp~Lv~LL-----~s~~~~v~~~A~~aL~nLs~~~~~~~~I~---~g~ip~LV~LL~--~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 351 LRQEKALSAIADLL-----TNEHERVVKAASGALRNLAVDARNKELIG---KHAIPNLVKNLP--GGQQNSSWNFSEDTV 420 (584)
T ss_dssp HTSHHHHHHHHHGG-----GCSCHHHHHHHHHHHHHHHTTCSCHHHHH---HHHHHHHHHTSS--SSSCSGGGTCCHHHH
T ss_pred HHHcCcHHHHHHHH-----cCCCHHHHHHHHHHHHHHhCChhHHHHHH---hCCHHHHHHHhc--CCcccccccchHHHH
Q ss_pred HHHHHHHHHHHhhCC---CcccCcCCcHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhccccCCCchhhHHHHHHHHhh
Q 003155 653 DDCFLLASRCIRYCP---QLFIPSSVFPSLVDCSMIGITVQ--HREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIP 727 (843)
Q Consensus 653 ~~~f~l~~~~~~~~p---~~~~~s~~l~~i~~~~~~~l~~~--e~~~~~s~~~fl~~li~~~~~~~~~~~~~~~~~~~~~ 727 (843)
..-..-+..++...+ ..+.....++.++++ +... ...+.+.|...+..+..... ++..+++
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~L----L~s~~~~~~v~k~Aa~vL~nl~~~~e----------lr~~~kk 486 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQGIEKLVLI----NKSGNRSEKEVRAAALVLQTIWGYKE----------LRKPLEK 486 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH----HTCSSSCHHHHHHHHHHHHHHHTSHH----------HHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH----HhCCCCChHHHHHHHHHHHHHHcCHH----------HHHHHHH
Q ss_pred hh
Q 003155 728 RG 729 (843)
Q Consensus 728 ~g 729 (843)
.|
T Consensus 487 ~G 488 (584)
T 3l6x_A 487 EG 488 (584)
T ss_dssp TT
T ss_pred cC
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=33.96 E-value=3.1e+02 Score=30.71 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-
Q 003155 336 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS- 414 (843)
Q Consensus 336 ~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~l~~~- 414 (843)
-+|+|-.+++++ ..++.+ ...+.+++..+. ...=.+|..++--+.=+ ...-. -++.+++.+..||.++
T Consensus 244 VRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL----~DLL~---~Ld~Vv~aVL~GL~D~D 312 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLD--SGDWQVQFSGLIALGYL----KEFVE---DKDGLCRKLVSLLSSPD 312 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGG--CSCHHHHHHHHHHHHHT----GGGCC---CHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHH-HhCChh-HHHHHHHHhhcC--CCCeeehhhhHHHHHHH----HHHHH---HHHHHHHHHHhhcCCcc
Confidence 467888888887 666554 333334442211 11236777766665522 21111 2789999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcc
Q 003155 415 EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 453 (843)
Q Consensus 415 ~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~ 453 (843)
++|+..||.++.-++ ....++.+++.+=+.+..
T Consensus 313 DDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIES 345 (800)
T ss_dssp HHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhh
Confidence 469999999998887 224577777777666653
No 92
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=32.76 E-value=32 Score=22.10 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 003155 778 IPLTALAEVERSRFLQALS 796 (843)
Q Consensus 778 ~P~~~~t~~~~~~f~~~l~ 796 (843)
.|+ +|+++|+.|+++|.
T Consensus 15 ~~n--LtEeQrn~yI~slk 31 (34)
T 1l6x_B 15 DPN--LNEEQRNAKIKSIR 31 (34)
T ss_dssp CTT--CCHHHHHHHHHHHH
T ss_pred CCC--CCHHHHHhHHHHHh
Confidence 555 99999999999985
No 93
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=31.11 E-value=4.8e+02 Score=28.11 Aligned_cols=51 Identities=18% Similarity=0.014 Sum_probs=25.5
Q ss_pred HHHHHhhhhHHHHHHHHHHcccCC----CCCCcccHHHHHHHHHHHhhHHHHHHH
Q 003155 721 RDSVIIPRGASITRILIASLTGAL----PSSRLETVTYALLALTRAYGVRSLEWA 771 (843)
Q Consensus 721 ~~~~~~~~g~~lv~~ll~~l~~~~----p~s~~~~~a~iL~~l~~~~~~~~~~wl 771 (843)
+..++..+...++..++.++-... ..........++..+....+..|.+..
T Consensus 355 i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~ 409 (449)
T 2npp_B 355 IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCT 409 (449)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 344555666666666655553221 122233344566666666665554433
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=26.91 E-value=1.1e+02 Score=30.46 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=47.0
Q ss_pred HHHHHHHhhhch--hhHHHHHHHHHHHHhcCCCCCCcccccchhH---HHHHhhcCCC--cchHHHHHHHHHHHhhhc
Q 003155 48 ALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLV---LTALSSLHSE--ILSEASVNVISELIHYSA 118 (843)
Q Consensus 48 Vl~~l~~~l~~~--~~~~~~L~cl~sWi~~~~~i~~~~l~~~~ll---~~~~~~L~~~--~~~~~A~~~l~eii~~~~ 118 (843)
|++++...+.+. ..+..++.++.+-+.-- ++++ ...+ +.+.+.++|+ ++|++|+.|+.++.....
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNA-GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 666666666553 47888999999998853 3442 2245 7777888855 799999999999886553
No 95
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=26.39 E-value=9.8e+02 Score=29.38 Aligned_cols=74 Identities=11% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcC-Cc--hHhHHHHHHHHH---hCCCcchhHHHHHHHHHHHH
Q 003155 560 RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ-QP--CFLYLSSEVIKI---FGSDPSCASYLHNLIEALFK 633 (843)
Q Consensus 560 ~i~e~~~~~l~~~i~~~~~~~~p~l~~l~~~l~~~~~~~~-~~--~~L~l~~~li~~---fg~~~~~~~~l~~~l~~l~~ 633 (843)
++..++|.+++++.+.++..+.|+++.+.+.+...+.... .. .-+.+...++.. ++.++.....+..++.++.+
T Consensus 599 ~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~ 678 (1204)
T 3a6p_A 599 NVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVAS 678 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998887776443 22 223333333222 34433333346666665553
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.46 E-value=1.6e+02 Score=25.16 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=35.2
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHh
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGA 385 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~ 385 (843)
+.+|.-+.+++++++.+++ ...++.++..+. .+++.||..+.+.+++
T Consensus 84 d~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l~--d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIGG------ERVRAAMEKLAE--TGTGFARKVAVNYLET 130 (131)
T ss_dssp HCCTHHHHHHHHHHHHHCS------HHHHHHHHHHTT--SCCTHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHh--CCCHHHHHHHHHHHHh
Confidence 4678888999999998873 245666666653 2478999999998875
No 97
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.79 E-value=3.7e+02 Score=25.28 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHhhccCCCccccchHHHhhhcc-----CCCCcHHHHHHHHHHHHhhHHHHhhCCCCc------hhHHHHH
Q 003155 336 PAEAALFCIRAISTYVSVVEAEVMPQVMALLP-----KLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVL 404 (843)
Q Consensus 336 ~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~-----~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l~~vl 404 (843)
.+++++-.++. +++-...+|.++..+. ++. +.......+.++.+. -.||.-. +++|+++
T Consensus 24 ~r~~aL~sL~~-----D~gL~~LlPyf~~fI~~~v~~nl~-~l~~L~~lm~~~~AL----l~N~~l~lepYlH~LipsvL 93 (196)
T 4atg_A 24 MKDIAIECLEK-----ESGLQQLVPYFIQHISELILKSFK-EAEVLKTCIALYFSL----IKNKHVFIDPYLHQILPSLL 93 (196)
T ss_dssp THHHHHHHHHH-----CSSCTTTHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH----HHCTTCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCChhhhHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHH----HcCCCCChHHHHHHHHHHHH
Confidence 45676666642 2223566777776552 222 444444445555443 3344310 2444555
Q ss_pred HHHHh-ccCCCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHH
Q 003155 405 SILTS-GMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 483 (843)
Q Consensus 405 ~~l~~-~l~~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~ 483 (843)
..+.. .+ .+..++..||..+..+|+.+...-...-+.+...+...+..+ + ..-...|.|+.-+ .++.+
T Consensus 94 tCll~k~l-~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp---~---~~l~t~YGAi~GL-~~lG~--- 162 (196)
T 4atg_A 94 TCVIGKSI-VDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP---N---RSEDSQYGALYCL-SILSK--- 162 (196)
T ss_dssp HHHHCTTC-CCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT---T---SCHHHHHHHHHHH-HHHCH---
T ss_pred HHHHhccc-CHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC---C---CChHHHHHHHHHH-HHhHH---
Confidence 54442 22 232499999999999999998766555677888888777431 1 2233344444332 23333
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 003155 484 KKALEMLCLPVVTPLQEII 502 (843)
Q Consensus 484 ~~~l~~l~~p~~~~l~~~~ 502 (843)
+.+..++-|-+..+.+.+
T Consensus 163 -~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 163 -NVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp -HHHHTHHHHHHHHHHHHT
T ss_pred -HHHHHhhhcCHHHHHHHH
Confidence 234455555555555433
No 98
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=22.93 E-value=2.9e+02 Score=32.14 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=85.2
Q ss_pred HHHHHHHhhccCCCc-c---c------cchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCC--chhH----HH-
Q 003155 340 ALFCIRAISTYVSVV-E---A------EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD--PSIL----AS- 402 (843)
Q Consensus 340 ~L~~l~~iae~~~~~-~---~------~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~--~~~l----~~- 402 (843)
++.|+..+|..-+.+ + . ..++.+...+.+ +|..+|+++++++..++. +|+. ..+. +.
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s--~n~~VrrAA~elI~NL~~----~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD--ENVPLQRSTLELISNMMS----HPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHT----SGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC--CCHHHHHHHHHHHHHHhC----CcHHHHHHHHhhcCchh
Confidence 477888887754221 0 1 234444444443 588999999999998875 3321 0111 11
Q ss_pred --HHHHHHhccCC-CHHHHHHHHHHHHHHHHHhh---hhhcC---CHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHH
Q 003155 403 --VLSILTSGMST-SEDTAAAAALAFRHICDDCR---KKLCG---YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 473 (843)
Q Consensus 403 --vl~~l~~~l~~-~~~v~~~A~~a~~~lc~~c~---~~l~~---~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~ 473 (843)
-+..+..-++. ..+++.+|+.||..++.... ..++. .++.++..+.... -+.+-+.+..-.+..
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~-------~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI-------DDIELRQRLLMLFFG 725 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC-------CCHHHHHHHHHHHHH
Confidence 14455444433 23499999999999975322 23332 3455555554431 135677788888888
Q ss_pred HHhcCCHHHHHHHHHHhh--hHHHHHHHHHHhcC
Q 003155 474 VITELPQVDAKKALEMLC--LPVVTPLQEIINQG 505 (843)
Q Consensus 474 vi~~~p~~~~~~~l~~l~--~p~~~~l~~~~~~~ 505 (843)
++.-.|.+.-...+..+. .++...+.+++...
T Consensus 726 L~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 726 LFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 887544322112222222 45566666666544
No 99
>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Probab=22.87 E-value=71 Score=28.22 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHH----------------hcCCCchhhhHHHHHHHHHHhhhhhHHHHHHhccCC
Q 003155 784 AEVERSRFLQALSEA----------------ASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKP 834 (843)
Q Consensus 784 t~~~~~~f~~~l~~~----------------~~~~~~~~~~~~~~~F~~~~r~~~~~~~~~~~~~~~ 834 (843)
+.+.|-.|++++... -.+..+.+.++.++-+...|+....++++|++.+.|
T Consensus 72 dK~~K~~FL~K~I~~V~~~~g~~l~v~p~KIVAG~Epe~TN~~LQ~la~a~~~~~~~~~AV~~vl~g 138 (140)
T 2eqo_A 72 DKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLSSDDAVRRVLAG 138 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHTTTCCHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccccHHHhhcCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHcC
Confidence 456666666665544 124567777888888888887777788888887765
No 100
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=22.57 E-value=4.9e+02 Score=24.49 Aligned_cols=199 Identities=12% Similarity=0.193 Sum_probs=125.5
Q ss_pred CCCcchhhHHHHHHHHhhccCCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 003155 331 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 410 (843)
Q Consensus 331 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~vl~~l~~~ 410 (843)
+.-|.-.--++-.+..+++..++--.+.+.+++.++.. +....+.+.....+|..+. .+|+ ...++++.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k-sEaIpltqeIa~a~G~la~---i~Pe---~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-SEAIPLTQEIAKAFGQMAK---EKPE---LVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHH---HCHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-cccCchHHHHHHHHhHHHH---hCHH---HHHhhHHHHHHH
Confidence 56799888899999999998876667778888877753 2234466677788888764 4786 899999999976
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003155 411 MS--TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 488 (843)
Q Consensus 411 l~--~~~~v~~~A~~a~~~lc~~c~~~l~~~~~~li~~~~~~~~~~~~~~l~~~~~~~l~eaig~vi~~~p~~~~~~~l~ 488 (843)
.. +++ ..-.-++++-.+.......+ ..+..-+..++..+ +..+++.... .|+++... --
T Consensus 116 yrigd~k-ikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-----d~~Dkl~aLn----Fi~alGen-----~~ 176 (253)
T 2db0_A 116 YRIGDEK-TKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-----NREDKLTALN----FIEAMGEN-----SF 176 (253)
T ss_dssp SCCCSHH-HHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-----SHHHHHHHHH----HHHTCCTT-----TH
T ss_pred HhcCCcc-ceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-----ChHHHHHHHH----HHHHHhcc-----Cc
Confidence 54 344 88889999999987655443 33344444555321 2445554332 23333221 12
Q ss_pred HhhhHHHHHHHHHHhcCCccccccCchhhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHhhcCCHH-HHHHHHH
Q 003155 489 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR-TMESLCR 567 (843)
Q Consensus 489 ~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~-i~e~~~~ 567 (843)
..+.|.+.++.+++..... .. .....+.|.++... +| ++-+++...++.+...++ +..++..
T Consensus 177 ~yv~PfLprL~aLL~D~de-----iV--RaSaVEtL~~lA~~----np------klRkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDE-----IV--RASAVEALVHLATL----ND------KLRKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSH-----HH--HHHHHHHHHHHHTS----CH------HHHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcch-----hh--hHHHHHHHHHHHHc----CH------HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4577888888887764321 11 23346777777652 22 355677777777776444 4455555
Q ss_pred HHHHH
Q 003155 568 ACKYA 572 (843)
Q Consensus 568 ~l~~~ 572 (843)
.+.++
T Consensus 240 gL~rl 244 (253)
T 2db0_A 240 GISRL 244 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 101
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=20.49 E-value=40 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHH
Q 003155 781 TALAEVERSRFLQAL 795 (843)
Q Consensus 781 ~~~t~~~~~~f~~~l 795 (843)
+++|+++|+.|+++|
T Consensus 21 ~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 21 PNLNEEQRNAKIKSI 35 (38)
T ss_dssp SSSCTTHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHh
Confidence 349999999999997
Done!