BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003157
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QV5|A Chain A, Crystal Structure Of Uncharacterized Protein Atu2773 From
Agrobacterium Tumefaciens C58
pdb|2QV5|B Chain B, Crystal Structure Of Uncharacterized Protein Atu2773 From
Agrobacterium Tumefaciens C58
Length = 261
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 706 MAELELAVGQNLFPVEQLGAPYRALRAFRPLIF---LETSQLGASPLLQDLPPSVILHHL 762
+ +L + L P+EQ P+ R R I L SQ G+ ++DLPP V L
Sbjct: 3 LGQLPVVGADGLRPMEQYARPWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFA 62
Query: 763 YS 764
S
Sbjct: 63 AS 64
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 322 GVKAREGL-WQRMGTCMDQLHSAV--VAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPML 378
G +A G+ WQR T ++L SA ++ ++++ + R+ ++ L+D +I+EG+ +
Sbjct: 197 GTEAAAGIEWQRE-TISEELTSANGNETKYYFEKLIPRNREEEQYLSLVDRIIREGN-VK 254
Query: 379 TDRVWEGLVKAFANQMKSAFTASSF----VKEIFTSGYPKLLSMIENLLERISRETDVK 433
DR G + F QM+ + + K +F G + E LL + ET K
Sbjct: 255 HDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRG------VCEELLWFLRGETYAK 307
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 322 GVKAREGL-WQRMGTCMDQLHSAV--VAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPML 378
G +A G+ WQR T ++L SA ++ ++++ + R+ ++ L+D +I+EG+ +
Sbjct: 197 GTEAAAGIEWQRE-TISEELTSANGNETKYYFEKLIPRNREEEQYLSLVDRIIREGN-VK 254
Query: 379 TDRVWEGLVKAFANQMKSAFTASSF----VKEIFTSGYPKLLSMIENLLERISRETDVK 433
DR G + F QM+ + + K +F G + E LL + ET K
Sbjct: 255 HDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRG------VCEELLWFLRGETYAK 307
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 176 ALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVG 235
A+RL+K++RD+ L + KA +++ +IV L ++V+N + + E
Sbjct: 219 AIRLTKRVRDM----------LTVVKADRINTDIV-------LKTMEVLNIDDEGLDEFD 261
Query: 236 EKLRNEAMKVLEGGMEGLNQAQVGTGLQ 263
K+ +++ GG GLN G++
Sbjct: 262 RKILKTIIEIYRGGPVGLNALAASLGVE 289
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 176 ALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVG 235
A+RL+K++RD+ L + KA +++ +IV L ++V+N + + E
Sbjct: 219 AIRLTKRVRDM----------LTVVKADRINTDIV-------LKTMEVLNIDDEGLDEFD 261
Query: 236 EKLRNEAMKVLEGGMEGLNQAQVGTGLQ 263
K+ +++ GG GLN G++
Sbjct: 262 RKILKTIIEIYRGGPVGLNALAASLGVE 289
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 176 ALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVG 235
A+RL+K++RD+ L + KA +++ +IV L ++V+N + + E
Sbjct: 219 AIRLTKRVRDM----------LTVVKADRINTDIV-------LKTMEVLNIDDEGLDEFD 261
Query: 236 EKLRNEAMKVLEGGMEGLNQAQVGTGLQ 263
K+ +++ GG GLN G++
Sbjct: 262 RKILKTIIEIYRGGPVGLNALAASLGVE 289
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 176 ALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVG 235
A+RL+K++RD+ L + KA +++ +IV L ++V+N + + E
Sbjct: 219 AIRLTKRVRDM----------LTVVKADRINTDIV-------LKTMEVLNIDDEGLDEFD 261
Query: 236 EKLRNEAMKVLEGGMEGLNQAQVGTGLQ 263
K+ +++ GG GLN G++
Sbjct: 262 RKILKTIIEIYRGGPVGLNALAASLGVE 289
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 176 ALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVG 235
A+RL+K++RD+ L + KA +++ +IV L ++V+N + + E
Sbjct: 219 AIRLTKRVRDM----------LTVVKADRINTDIV-------LKTMEVLNIDDEGLDEFD 261
Query: 236 EKLRNEAMKVLEGGMEGLNQAQVGTGLQ 263
K+ +++ GG GLN G++
Sbjct: 262 RKILKTIIEIYRGGPVGLNALAASLGVE 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,451,934
Number of Sequences: 62578
Number of extensions: 751172
Number of successful extensions: 1878
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 14
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)