Query 003157
Match_columns 843
No_of_seqs 165 out of 222
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 18:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2211 Predicted Golgi transp 100.0 8E-141 2E-145 1169.0 76.5 774 3-834 9-793 (797)
2 PF10392 COG5: Golgi transport 100.0 1.3E-29 2.9E-34 243.1 16.6 124 60-183 1-132 (132)
3 KOG2180 Late Golgi protein sor 99.9 2.5E-19 5.5E-24 203.0 46.0 572 60-713 12-652 (793)
4 PF04100 Vps53_N: Vps53-like, 99.8 7.7E-17 1.7E-21 180.9 28.1 324 65-423 2-366 (383)
5 PF10191 COG7: Golgi complex c 99.6 9.6E-10 2.1E-14 134.1 62.8 640 58-758 1-758 (766)
6 KOG2211 Predicted Golgi transp 99.5 3E-11 6.5E-16 137.1 36.3 289 502-831 347-638 (797)
7 PF10475 DUF2450: Protein of u 99.1 3.2E-08 7E-13 108.1 28.6 229 59-296 5-238 (291)
8 KOG2307 Low density lipoprotei 99.1 3.8E-05 8.2E-10 86.8 50.7 207 60-270 26-235 (705)
9 KOG2176 Exocyst complex, subun 98.6 0.005 1.1E-07 73.3 55.0 175 68-252 32-208 (800)
10 PF06248 Zw10: Centromere/kine 98.3 0.028 6E-07 67.9 48.0 199 81-286 11-238 (593)
11 PF07393 Sec10: Exocyst comple 98.2 0.035 7.6E-07 68.4 57.6 594 127-766 3-700 (710)
12 PF08700 Vps51: Vps51/Vps67; 98.2 1.1E-05 2.3E-10 71.9 10.7 83 62-144 1-86 (87)
13 PF06148 COG2: COG (conserved 98.1 2.8E-06 6.1E-11 82.0 4.0 127 60-186 6-132 (133)
14 KOG2346 Uncharacterized conser 97.9 0.00027 5.9E-09 79.1 15.6 201 59-270 25-228 (636)
15 KOG0412 Golgi transport comple 97.5 0.35 7.7E-06 57.3 50.2 181 86-274 40-228 (773)
16 PF04091 Sec15: Exocyst comple 97.1 0.014 3.1E-07 64.5 16.4 239 481-741 27-281 (311)
17 PF04048 Sec8_exocyst: Sec8 ex 96.9 0.038 8.2E-07 54.1 16.0 121 57-184 11-133 (142)
18 PF06046 Sec6: Exocyst complex 96.7 0.075 1.6E-06 63.7 19.6 270 450-742 200-501 (566)
19 PF04124 Dor1: Dor1-like famil 96.5 0.41 8.9E-06 53.7 22.0 174 84-272 14-187 (338)
20 PF15469 Sec5: Exocyst complex 96.4 0.31 6.7E-06 49.6 19.0 163 98-270 2-170 (182)
21 KOG2347 Sec5 subunit of exocys 96.4 3.8 8.3E-05 50.0 43.2 171 62-246 166-348 (934)
22 PF10474 DUF2451: Protein of u 95.9 0.52 1.1E-05 50.1 18.1 135 572-717 32-170 (234)
23 KOG4182 Uncharacterized conser 94.6 11 0.00024 43.1 52.5 347 58-434 2-377 (828)
24 PF04129 Vps52: Vps52 / Sac2 f 91.8 18 0.00039 43.0 21.4 177 116-295 21-208 (508)
25 KOG3691 Exocyst complex subuni 91.3 46 0.00099 41.3 55.8 158 82-247 48-205 (982)
26 PF06419 COG6: Conserved oligo 88.8 66 0.0014 39.3 47.7 339 329-716 78-477 (618)
27 PF04437 RINT1_TIP1: RINT-1 / 87.5 68 0.0015 38.0 26.6 238 483-741 177-449 (494)
28 KOG2115 Vacuolar sorting prote 86.8 94 0.002 38.8 51.1 153 87-246 246-398 (951)
29 PF06419 COG6: Conserved oligo 85.4 99 0.0021 37.8 53.5 418 96-566 21-475 (618)
30 KOG2033 Low density lipoprotei 85.2 98 0.0021 37.6 43.6 189 82-284 22-218 (863)
31 PRK11637 AmiB activator; Provi 80.4 79 0.0017 36.7 17.9 19 83-101 46-64 (428)
32 PF05478 Prominin: Prominin; 78.0 2E+02 0.0044 36.3 21.8 29 86-114 182-210 (806)
33 PF10191 COG7: Golgi complex c 76.6 2.1E+02 0.0046 35.9 40.7 59 588-648 389-447 (766)
34 PF04124 Dor1: Dor1-like famil 74.8 33 0.00071 38.5 12.3 107 82-188 19-140 (338)
35 PF05478 Prominin: Prominin; 74.4 86 0.0019 39.6 16.9 102 58-166 184-289 (806)
36 PF10186 Atg14: UV radiation r 73.9 1.4E+02 0.003 32.4 17.2 76 86-161 29-108 (302)
37 PF04728 LPP: Lipoprotein leuc 72.3 21 0.00045 29.2 7.0 50 116-165 3-52 (56)
38 KOG2391 Vacuolar sorting prote 66.8 57 0.0012 36.2 11.1 31 118-148 248-278 (365)
39 TIGR02996 rpt_mate_G_obs repea 64.7 5.2 0.00011 30.7 2.0 22 781-802 19-40 (42)
40 PF15003 HAUS2: HAUS augmin-li 63.9 1.4E+02 0.003 32.4 13.2 99 85-188 55-154 (277)
41 TIGR03185 DNA_S_dndD DNA sulfu 61.6 65 0.0014 39.5 12.0 67 118-184 423-489 (650)
42 PF07889 DUF1664: Protein of u 58.9 72 0.0016 30.6 9.1 37 126-162 85-121 (126)
43 PF10158 LOH1CR12: Tumour supp 58.2 60 0.0013 31.4 8.5 79 65-143 22-114 (131)
44 PF04912 Dynamitin: Dynamitin 57.6 1.8E+02 0.004 33.2 14.0 79 124-214 262-346 (388)
45 PHA02562 46 endonuclease subun 56.9 3.5E+02 0.0077 32.2 17.0 137 82-242 304-440 (562)
46 KOG1853 LIS1-interacting prote 56.9 1.2E+02 0.0026 32.4 10.9 78 84-175 34-115 (333)
47 PF01865 PhoU_div: Protein of 55.9 2.5E+02 0.0054 28.9 19.5 179 85-274 16-200 (214)
48 KOG3758 Uncharacterized conser 54.5 4.7E+02 0.01 31.7 42.2 93 199-294 163-260 (655)
49 PRK10884 SH3 domain-containing 54.3 1.8E+02 0.004 30.3 12.1 78 81-165 90-167 (206)
50 smart00762 Cog4 COG4 transport 52.5 3.7E+02 0.0081 30.0 22.9 53 232-284 2-54 (324)
51 PF04156 IncA: IncA protein; 51.5 2.7E+02 0.0059 28.1 13.7 29 122-150 122-150 (191)
52 PF05266 DUF724: Protein of un 51.0 2.1E+02 0.0045 29.5 11.7 59 47-105 9-100 (190)
53 KOG0977 Nuclear envelope prote 50.8 5.2E+02 0.011 31.1 19.5 76 86-161 115-193 (546)
54 PRK00286 xseA exodeoxyribonucl 49.4 4.8E+02 0.01 30.3 17.7 13 67-79 211-223 (438)
55 PF06103 DUF948: Bacterial pro 49.3 1.2E+02 0.0026 26.9 8.6 32 85-117 20-51 (90)
56 PF10805 DUF2730: Protein of u 48.6 1.2E+02 0.0025 28.2 8.6 44 120-163 53-98 (106)
57 TIGR00237 xseA exodeoxyribonuc 48.5 5E+02 0.011 30.3 18.0 13 67-79 206-218 (432)
58 PHA03332 membrane glycoprotein 48.3 3.2E+02 0.0069 35.0 14.2 88 56-148 829-923 (1328)
59 PF11932 DUF3450: Protein of u 47.9 3.7E+02 0.0081 28.6 18.2 102 119-226 52-153 (251)
60 KOG0995 Centromere-associated 46.4 6E+02 0.013 30.5 19.2 113 57-169 203-326 (581)
61 PF06008 Laminin_I: Laminin Do 46.1 4.1E+02 0.0089 28.6 21.4 23 84-106 17-39 (264)
62 PRK09039 hypothetical protein; 45.6 4.9E+02 0.011 29.3 18.4 77 82-163 44-121 (343)
63 PF14923 CCDC142: Coiled-coil 44.7 4.8E+02 0.01 30.6 14.4 105 629-744 272-384 (450)
64 PF09712 PHA_synth_III_E: Poly 43.8 4.8E+02 0.01 28.7 15.7 17 481-497 267-283 (293)
65 KOG2273 Membrane coat complex 41.5 6.6E+02 0.014 29.7 23.3 23 52-74 213-240 (503)
66 PF14712 Snapin_Pallidin: Snap 41.4 2.5E+02 0.0053 24.9 9.4 79 86-165 9-92 (92)
67 COG1392 Phosphate transport re 40.8 4.6E+02 0.0099 27.6 19.0 184 84-279 17-207 (217)
68 PF14257 DUF4349: Domain of un 40.7 1.1E+02 0.0024 32.9 8.4 40 107-146 150-192 (262)
69 PRK15396 murein lipoprotein; P 38.8 1.2E+02 0.0027 26.6 6.6 48 117-164 26-73 (78)
70 KOG2196 Nuclear porin [Nuclear 38.3 5.3E+02 0.011 27.6 14.4 40 105-144 88-127 (254)
71 PF00957 Synaptobrevin: Synapt 38.2 2.1E+02 0.0045 25.2 8.4 59 84-146 3-61 (89)
72 PF10146 zf-C4H2: Zinc finger- 37.1 2.5E+02 0.0055 29.8 10.0 76 86-161 27-106 (230)
73 PF08317 Spc7: Spc7 kinetochor 36.9 6.3E+02 0.014 28.1 14.0 36 126-161 212-247 (325)
74 KOG0976 Rho/Rac1-interacting s 36.5 9.6E+02 0.021 30.1 18.3 86 87-172 77-162 (1265)
75 PF07889 DUF1664: Protein of u 35.7 4.1E+02 0.0089 25.6 10.6 28 140-167 85-112 (126)
76 PRK09973 putative outer membra 35.4 1.4E+02 0.003 26.7 6.4 48 117-164 25-72 (85)
77 PRK11637 AmiB activator; Provi 35.1 7.6E+02 0.017 28.5 21.7 15 87-101 43-57 (428)
78 KOG3850 Predicted membrane pro 35.0 3.4E+02 0.0073 30.9 10.7 19 84-102 274-292 (455)
79 PF10186 Atg14: UV radiation r 34.9 6E+02 0.013 27.3 19.3 83 84-167 20-107 (302)
80 PRK03947 prefoldin subunit alp 34.5 4.3E+02 0.0092 25.4 11.3 44 120-163 91-134 (140)
81 PRK10803 tol-pal system protei 34.0 1.2E+02 0.0027 32.7 7.4 52 104-155 49-100 (263)
82 KOG3850 Predicted membrane pro 33.9 7.6E+02 0.017 28.2 15.9 104 118-241 262-365 (455)
83 KOG2911 Uncharacterized conser 33.6 8.1E+02 0.018 28.4 14.7 26 198-223 345-370 (439)
84 PRK15048 methyl-accepting chem 33.2 8.4E+02 0.018 29.0 15.1 107 82-188 397-511 (553)
85 PF05667 DUF812: Protein of un 32.1 1E+03 0.022 29.1 21.3 51 107-157 384-435 (594)
86 KOG3745 Exocyst subunit - Sec1 31.9 1.1E+03 0.024 29.4 55.2 270 481-766 459-747 (763)
87 COG1298 FlhA Flagellar biosynt 31.4 8.3E+02 0.018 30.1 13.9 106 96-249 487-592 (696)
88 KOG3821 Heparin sulfate cell s 31.3 9.8E+02 0.021 28.7 18.6 100 407-529 129-229 (563)
89 PRK03918 chromosome segregatio 31.1 7.4E+02 0.016 31.4 14.9 101 82-187 624-730 (880)
90 PF04012 PspA_IM30: PspA/IM30 30.7 6.3E+02 0.014 26.2 13.4 73 86-158 60-133 (221)
91 TIGR03044 PS_II_psb27 photosys 30.3 2.6E+02 0.0057 27.2 7.9 72 634-714 60-133 (135)
92 KOG4515 Uncharacterized conser 30.3 6.1E+02 0.013 26.0 13.2 114 51-177 48-167 (217)
93 PRK11085 magnesium/nickel/coba 30.2 4.3E+02 0.0093 29.5 11.0 58 83-143 145-203 (316)
94 PF13874 Nup54: Nucleoporin co 30.0 2.7E+02 0.0059 27.0 8.4 19 117-135 45-63 (141)
95 KOG0994 Extracellular matrix g 30.0 1.4E+03 0.031 30.1 30.6 49 378-427 1665-1713(1758)
96 PF00435 Spectrin: Spectrin re 30.0 3.1E+02 0.0067 23.6 8.3 71 84-155 34-105 (105)
97 PF04340 DUF484: Protein of un 29.7 2.1E+02 0.0046 30.0 8.2 78 107-184 24-101 (225)
98 PRK06012 flhA flagellar biosyn 29.5 1E+03 0.022 29.7 14.8 107 93-247 485-591 (697)
99 PRK11166 chemotaxis regulator 29.1 7E+02 0.015 26.3 16.5 37 205-242 131-167 (214)
100 PF02601 Exonuc_VII_L: Exonucl 29.0 8.1E+02 0.018 26.9 17.3 13 67-79 94-106 (319)
101 PF13256 DUF4047: Domain of un 28.3 5.3E+02 0.011 24.6 10.4 69 98-166 37-112 (125)
102 TIGR02977 phageshock_pspA phag 28.1 7.1E+02 0.015 26.0 12.3 29 87-115 62-90 (219)
103 PLN03094 Substrate binding sub 27.7 8.9E+02 0.019 27.7 13.0 51 231-281 302-352 (370)
104 PF12022 DUF3510: Domain of un 27.4 2.9E+02 0.0063 26.3 7.9 51 628-689 30-80 (125)
105 KOG4515 Uncharacterized conser 27.3 2.6E+02 0.0055 28.6 7.5 66 87-153 116-187 (217)
106 PF10241 KxDL: Uncharacterized 27.2 3.9E+02 0.0085 23.8 8.2 28 123-150 57-84 (88)
107 PRK01156 chromosome segregatio 27.1 8.3E+02 0.018 31.2 14.3 43 122-164 680-722 (895)
108 PF05531 NPV_P10: Nucleopolyhe 26.9 4E+02 0.0088 23.3 7.7 26 117-142 36-61 (75)
109 KOG0159 Cytochrome P450 CYP11/ 26.8 1.2E+03 0.025 28.0 15.1 111 219-348 162-282 (519)
110 COG4942 Membrane-bound metallo 26.6 1.1E+03 0.023 27.5 18.5 18 84-101 38-55 (420)
111 PF12205 GIT1_C: G protein-cou 26.3 5.9E+02 0.013 24.4 10.5 19 87-105 12-30 (123)
112 PF12128 DUF3584: Protein of u 26.0 1.7E+03 0.037 29.7 19.8 114 58-175 799-913 (1201)
113 PF07439 DUF1515: Protein of u 25.7 4.4E+02 0.0095 24.7 8.1 59 83-148 7-65 (112)
114 PF06785 UPF0242: Uncharacteri 25.6 9.9E+02 0.021 26.8 16.5 135 93-241 70-213 (401)
115 COG3883 Uncharacterized protei 25.5 4.7E+02 0.01 28.4 9.7 69 83-162 37-105 (265)
116 KOG1029 Endocytic adaptor prot 25.0 1.4E+03 0.031 28.6 14.3 136 86-247 446-591 (1118)
117 KOG2286 Exocyst complex subuni 25.0 1.4E+03 0.03 28.3 45.1 239 449-721 329-585 (667)
118 PF15290 Syntaphilin: Golgi-lo 24.9 8.8E+02 0.019 26.5 11.4 87 82-169 77-170 (305)
119 PRK10698 phage shock protein P 24.3 8.5E+02 0.018 25.6 12.3 76 86-161 61-144 (222)
120 PF04102 SlyX: SlyX; InterPro 24.1 3.7E+02 0.0079 22.8 7.1 15 128-142 9-23 (69)
121 TIGR02132 phaR_Bmeg polyhydrox 24.0 7.8E+02 0.017 25.1 12.7 30 125-154 74-103 (189)
122 PF04048 Sec8_exocyst: Sec8 ex 23.5 6.9E+02 0.015 24.2 11.2 14 200-213 120-133 (142)
123 COG1842 PspA Phage shock prote 23.3 9.1E+02 0.02 25.6 13.6 80 86-165 61-141 (225)
124 COG5185 HEC1 Protein involved 23.3 1.3E+03 0.027 27.3 15.6 190 84-292 288-477 (622)
125 PF10168 Nup88: Nuclear pore c 23.2 1.5E+03 0.033 28.2 21.4 32 125-160 581-612 (717)
126 PF12252 SidE: Dot/Icm substra 23.1 1.8E+03 0.038 28.9 19.1 188 84-277 1070-1296(1439)
127 TIGR03007 pepcterm_ChnLen poly 23.0 8.5E+02 0.018 28.6 12.5 15 88-102 279-293 (498)
128 PRK02224 chromosome segregatio 22.7 7E+02 0.015 31.7 12.4 40 126-165 649-688 (880)
129 PF06160 EzrA: Septation ring 22.6 1.4E+03 0.03 27.5 37.2 43 490-532 451-493 (560)
130 PF14282 FlxA: FlxA-like prote 22.4 2.9E+02 0.0062 25.6 6.6 60 82-148 17-76 (106)
131 PF10234 Cluap1: Clusterin-ass 22.2 3.4E+02 0.0075 29.5 8.0 45 121-165 167-211 (267)
132 KOG0994 Extracellular matrix g 22.1 1.9E+03 0.042 29.0 41.4 31 71-101 1211-1242(1758)
133 COG1579 Zn-ribbon protein, pos 22.0 9.9E+02 0.022 25.6 11.6 92 82-175 57-148 (239)
134 PF03915 AIP3: Actin interacti 21.9 1.3E+03 0.028 26.9 14.4 15 197-211 253-267 (424)
135 PF10458 Val_tRNA-synt_C: Valy 21.9 4.5E+02 0.0098 21.9 7.2 21 83-103 3-23 (66)
136 PRK09793 methyl-accepting prot 21.9 8.3E+02 0.018 29.0 12.2 87 82-168 395-481 (533)
137 PF05377 FlaC_arch: Flagella a 21.7 3E+02 0.0066 22.6 5.6 42 117-158 1-42 (55)
138 KOG0860 Synaptobrevin/VAMP-lik 21.5 6.1E+02 0.013 24.1 8.4 59 87-146 29-87 (116)
139 PF14662 CCDC155: Coiled-coil 21.1 9.3E+02 0.02 24.9 18.5 82 85-175 37-120 (193)
140 PF05531 NPV_P10: Nucleopolyhe 20.9 3.6E+02 0.0079 23.6 6.3 22 118-139 13-34 (75)
141 PRK04406 hypothetical protein; 20.9 4.4E+02 0.0095 22.9 7.0 8 180-187 52-59 (75)
142 PRK02119 hypothetical protein; 20.7 4.2E+02 0.0091 22.9 6.8 9 179-187 49-57 (73)
143 PRK02793 phi X174 lysis protei 20.6 4.8E+02 0.011 22.4 7.1 49 89-148 6-54 (72)
144 PF00489 IL6: Interleukin-6/G- 20.3 8.4E+02 0.018 24.1 10.2 48 82-140 52-99 (154)
145 PRK10884 SH3 domain-containing 20.3 7.8E+02 0.017 25.7 10.0 16 84-99 100-115 (206)
146 PRK00846 hypothetical protein; 20.2 5.4E+02 0.012 22.6 7.3 51 87-148 9-59 (77)
147 PF01544 CorA: CorA-like Mg2+ 20.2 8.4E+02 0.018 25.8 10.9 29 116-144 151-179 (292)
148 PRK10807 paraquat-inducible pr 20.1 8.2E+02 0.018 29.5 11.5 18 125-142 445-462 (547)
149 PLN03094 Substrate binding sub 20.0 1.3E+03 0.029 26.3 14.8 17 86-102 229-245 (370)
150 PRK04325 hypothetical protein; 20.0 4.5E+02 0.0097 22.7 6.8 9 179-187 49-57 (74)
No 1
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-141 Score=1169.00 Aligned_cols=774 Identities=38% Similarity=0.572 Sum_probs=717.8
Q ss_pred CCCCCCCcccc-cccccCCCCCCCCCCCccccccccccccccCCCCChhhhhcCChhhhcccCCCCCHHHHHHhHhcCCC
Q 003157 3 SPAAVSSPFHR-LASLKNPTISSPVNATSATSTVTATATATTASSSSPLDVFANDPILSAFLSPSFSSTSFSSAALSSGS 81 (843)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~FL~~dFd~~~fan~lL~~~~ 81 (843)
+|.+++|...| ++.+++| +|.. -..+.+..+.+.|+.||.|.+|++.+|+...|.+.-+.+..
T Consensus 9 ~dS~s~psl~R~~a~~~np------~p~~----------l~~G~~~~~~r~l~qdp~ls~fln~~fSv~~~tSas~~s~~ 72 (797)
T KOG2211|consen 9 CDSSSAPSLNRKVAGLHNP------LPKQ----------LRKGVETNLPRLLEQDPALSSFLNTLFSVQMMTSASKESNR 72 (797)
T ss_pred CCCCCCchhhhhhhccCCC------Chhh----------hhcCccccchHHHhcCccccccccchhhhhhHHHHHHhcCC
Confidence 45566777777 8888874 1111 12234556779999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
|.+++++|..+|.++|+|++.+|..+|.+||+|++++...+..+.++...+..|+.+++||+.++.+||+.+..++.+|.
T Consensus 73 ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl~ 152 (797)
T KOG2211|consen 73 IATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVLT 152 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003157 162 NLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNE 241 (843)
Q Consensus 162 rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~ 241 (843)
|||.++++||+++|.+.|.+||+.+.+.+. +|+.|+|++|+||++++++.+|+||++|++++.+|.+.+.+|+++
T Consensus 153 rLhva~~lLrrsgr~l~LskkL~~l~~~~~-----~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~~s~~evrN~ 227 (797)
T KOG2211|consen 153 RLHVAENLLRRSGRALELSKKLASLNSSMV-----VDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSSPEVRNK 227 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----HhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999988765 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHHHHHHHHHH-HhhchhhhhcCCCC--CCCCCCCCCC-CC
Q 003157 242 AMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYKNMGVKSVN-VALDMKAISGGGAG--FGPGGIRGSG-TP 317 (843)
Q Consensus 242 a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~~~~k~i~-~ald~~~Ls~~~~~--~~~~~~r~~~-~p 317 (843)
+...|..||++.|+++|++|||||||||+|.++++.+++.|+...++.++ .+.|+..|.+.|.+ ..||+.|..| +|
T Consensus 228 a~~vLe~glq~~ne~qvgtglqvfynfgtLekt~d~lv~~y~ad~e~sl~~va~dikvlns~gs~s~~~pgp~Rs~g~sp 307 (797)
T KOG2211|consen 228 ALPVLEAGLQSHNEQQVGTGLQVFYNFGTLEKTADLLVSRYPADTEYSLRFVAQDIKVLNSKGSSSPALPGPLRSLGNSP 307 (797)
T ss_pred HHHHHHHHHHhhcHHHHhhHHHHHHhcchHHHHHHHHHHhcccchHHHHHHHHhhhHHhhcCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999 89999988854433 4456667777 99
Q ss_pred CcCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Q 003157 318 QIGGGVKAREGLWQRMGTCM-DQLHSAVVAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEGLVKAFANQMKS 396 (843)
Q Consensus 318 ~~~~~~~~~~~lw~~le~~~-d~i~~~~~~v~~Le~vL~kkrdp~t~~~fL~~l~~~~~~sl~~~FW~~la~~~~~~~~~ 396 (843)
.+|+++++|+.+|+++.++| |+++..|++|||||+||+|||| |.+|.+++.+.++++++++||.++.+.|.++|.+
T Consensus 308 ~~g~ta~lra~lw~nm~slm~d~lf~~c~qv~hlq~vl~kkrD---h~~l~~e~sk~gd~cI~~rfw~~l~qal~sqfd~ 384 (797)
T KOG2211|consen 308 LTGSTARLRALLWENMFSLMHDNLFVDCIQVAHLQEVLKKKRD---HAELSQEMSKNGDKCIPERFWKKLEQALHSQFDD 384 (797)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 9999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHhcCchhhhHhhhchhhHHHHHHHHHHHHhhhhcccccCCCCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCC
Q 003157 397 AFTASSFVKEIFTSGYPKLLSMIENLLERISRETDVKGVLPAISPEGKGQMIAAIEIFQTAFLTLCLTRLSDLVNSVFPM 476 (843)
Q Consensus 397 a~~~s~~v~q~L~~~yPkllrl~~~l~~rl~~~~~~~g~~~~~~~e~~~~l~~sl~~fe~ayLsrs~~Rl~~~v~~~Fp~ 476 (843)
+... .|++++|..|||||+++++++++|+.. ..|+++-+.++.+.+.+.|||++|+|+|+ | +|..||+
T Consensus 385 a~~~-~fltq~f~~gypKLl~~a~gL~kRl~~------~~p~~~~~~ke~l~a~~ap~e~aylSkca-R----~n~~fp~ 452 (797)
T KOG2211|consen 385 ALLG-DFLTQNFMTGYPKLLQTADGLTKRLPA------ESPSVTAIQKETLDAIVAPVENAYLSKCA-R----MNVEFPG 452 (797)
T ss_pred hhHH-HHHHHHHHhchHHHHHHHHhHHHHhhc------ccCCccccHHHHHHHHHHHHHHHHHHHHH-H----hheecCC
Confidence 9886 999999999999999999999999976 23445555578899999999999999999 7 8999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccCCCCCHHHHHHHHHHH
Q 003157 477 SSRGSVPSKEQISRILSRIQEEIEAVHMDGRLTLLVLREIGKVLILVAERAEYQISTGPEARQIPGPATSAQIKNFALCQ 556 (843)
Q Consensus 477 ~~r~~~Ps~~el~~i~r~i~~EL~~a~~d~~L~~~v~~~v~k~l~l~~~k~e~~l~~~~~a~qv~~~~t~~Q~~N~~L~n 556 (843)
++|+++|+++|++.+++.|..||+++..|..|+..|+++++|+++.||.|.|+++++|+|++||+||+|..|++|++++|
T Consensus 453 ~gr~~lPs~eeld~~I~hi~~el~av~~d~rlTlavs~~~ak~i~~l~~kae~qistg~D~rQvigp~ts~q~rnv~l~n 532 (797)
T KOG2211|consen 453 MGRSVLPSMEELDTYINHIDMELAAVSRDVRLTLAVSQIAAKVIDSLILKAELQISTGSDERQVIGPDTSRQLRNVRLMN 532 (797)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCchHHHHHHHHHHH
Confidence 99977999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc--cCccCCCCCChh
Q 003157 557 HLQEIYTRMSSMITGLPPIAAEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLG--MDAAMDNNASPY 634 (843)
Q Consensus 557 ~l~~~~~~l~~~l~~~p~~~~~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~--~~~~~~~~~S~Y 634 (843)
.|+++|.++.. ..|++.+++++.|++..+.+.+|.||.+||.++|+... .+..++++||.|
T Consensus 533 ~l~kyhdsvr~-----------------~aI~~s~e~avlpl~t~~~dilesiI~tis~~~ls~~~lss~~~pd~~~s~Y 595 (797)
T KOG2211|consen 533 WLSKYHDSVRL-----------------LAIFGSDEDAVLPLETVKKDILESIIVTISPSELSLPNLSSKWTPDEYVSWY 595 (797)
T ss_pred HHHHhhhhhHH-----------------HHHHHhhhhhhhHHHHHHHHHHHHHHhhcCHhhcCCcccccccCCCcchhHH
Confidence 99999999885 46788899999999999999999999999999999662 234488999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHc
Q 003157 635 MEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVG 714 (843)
Q Consensus 635 m~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs 714 (843)
|+|||.||.|++++|+++|+++..+. ++. .+.....+|.||+++|++|||++|||+|.|||||+.||+|+|+||+
T Consensus 596 meelQ~fVlrf~s~~~s~f~~s~~~~---~~~--~~~~t~~~akr~veffirhasl~rplse~gkmRlaqD~aemElaVg 670 (797)
T KOG2211|consen 596 MEELQLFVLRFLSGLVSSFNSSVISR---GQQ--HYVDTYPRAKRIVEFFIRHASLERPLSELGKMRLAQDIAEMELAVG 670 (797)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHhhc---ccc--cchhhHHHHHHHHHHhhhhhhhcCchhhhhhhhHHHHhHHHHHhhC
Confidence 99999999999999999999773211 111 1123578999999999999999999999999999999999999999
Q ss_pred ccCCCccccchhHHHHHhhhhhccCCchhhccCCC-CCCCChH-HHHHHHHccCCCCCCChhhhcCCCHHHHHHHhhcCC
Q 003157 715 QNLFPVEQLGAPYRALRAFRPLIFLETSQLGASPL-LQDLPPS-VILHHLYSRGPDELQSPLQRNKLTPLQYSLWLDSQG 792 (843)
Q Consensus 715 ~~l~~~~~lG~~y~~LRafR~LLf~~~~~i~~~~~-~~~lp~~-~vl~hL~srap~~L~sPh~~~~ws~~~y~~Wld~h~ 792 (843)
|+|.+++++|+|||+||+||||+|++.++|+++|. ++++||+ |||||||+|||.||.|||++|.||+.+|+.|||+|+
T Consensus 671 p~c~~ve~lgkpyr~lrafrpl~vqt~e~i~sspl~~ddv~ps~IvL~~lftrapaeL~sp~qta~ws~~r~s~wLd~h~ 750 (797)
T KOG2211|consen 671 PECIEVEVLGKPYRDLRAFRPLMVQTVEGILSSPLVRDDVEPSLIVLRYLFTRAPAELNSPLQTASWSQDRTSMWLDSHG 750 (797)
T ss_pred cCCccHHHcCCchhhHhhccchHHHhhhhhhcCccccccccchHHHHHHHhccCchhhcCchhhcccChHHHHHHHhcCc
Confidence 99999999999999999999999999999999999 6776665 999999999999999999999999999999999995
Q ss_pred -hHhHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 003157 793 -EDQIWKGIKATLDDYAAKVRARGDKEFSPVYPLMLQLGSALS 834 (843)
Q Consensus 793 -e~e~l~~i~~~L~~y~~~v~~~~~~~~~~~y~~m~~~~~~~~ 834 (843)
|+|+|++|+|||++|..++|.||++||+||||+|+|+++++.
T Consensus 751 ~E~e~l~lisgAl~ay~~s~rsrg~kefapvyp~mvq~ls~a~ 793 (797)
T KOG2211|consen 751 KEMEVLSLISGALKAYLTSLRSRGSKEFAPVYPAMVQDLSRAQ 793 (797)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCcccccccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999753
No 2
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=99.97 E-value=1.3e-29 Score=243.12 Aligned_cols=124 Identities=43% Similarity=0.633 Sum_probs=120.4
Q ss_pred hcccCCCCCHHHHHHhHhcC--------CChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHH
Q 003157 60 SAFLSPSFSSTSFSSAALSS--------GSPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSA 131 (843)
Q Consensus 60 ~~FL~~dFd~~~fan~lL~~--------~~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~ 131 (843)
|+||+|||||.+|+|++|.+ ..++++++||++||++||++|+++|.+||++||+|+++++++++++++|+++
T Consensus 1 e~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~ 80 (132)
T PF10392_consen 1 EAFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSS 80 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 68999999999999999994 3488999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 132 VSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKL 183 (843)
Q Consensus 132 i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL 183 (843)
+++|+++++||+++|++||+++++.+.+|+|+|+||+|||+++||++|++||
T Consensus 81 v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L~~rL 132 (132)
T PF10392_consen 81 VESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQLVRRL 132 (132)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999996
No 3
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.5e-19 Score=203.03 Aligned_cols=572 Identities=15% Similarity=0.123 Sum_probs=401.2
Q ss_pred hcccCCCCCHHHHHHhHhcCC----ChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 003157 60 SAFLSPSFSSTSFSSAALSSG----SPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSL 135 (843)
Q Consensus 60 ~~FL~~dFd~~~fan~lL~~~----~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L 135 (843)
+.|-.|+|+...|.|.++.+. +++..+.|+.-.|.++|++|+..|..+. ..-.+.+..+..++..+..|
T Consensus 12 q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~-------N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 12 QMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQE-------NSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred HhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccchhhhhHHHHHHHHHHH
Confidence 556669999999999999884 5888899999999999999987765543 33445566677778888888
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---CCchHHHHHHHHHHHHHHHh
Q 003157 136 QSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEA---EPEKLDLTKAAQLHCEIVTM 212 (843)
Q Consensus 136 ~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~---~~~~~dl~kaA~~l~EL~~L 212 (843)
...+..+|+..-.-...|++.|+.+++|+-|...|-.++. ..+||+++..+..+ -...+++-++|..+.-+.++
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT---~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~l 161 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSIT---TLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQL 161 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHH
Confidence 8888888888888999999999999999999999999888 88999999865321 01236788888888888888
Q ss_pred hcc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------hhhhhhHHHHhhhhcchHHHHHHHHHHHHH
Q 003157 213 CKE-YDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLN-------QAQVGTGLQVFYNLGELKVTVEHLVNKYKN 284 (843)
Q Consensus 213 l~~-~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n-------~~~v~saLqv~~nLg~L~~~v~~lv~~~~~ 284 (843)
++. ..+++|+-|..+...|.+.++.+..+....+..+..+.+ -..+..+|.|...|. |+..+.+|++|+.
T Consensus 162 l~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~le--psvreelIkwf~~ 239 (793)
T KOG2180|consen 162 LNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALE--PSVREELIKWFCS 239 (793)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 864 578999999999999999999999999888876443332 356899999999999 8888999999999
Q ss_pred HHHHHHHHhhchhhhhcCCCCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHH--------HHHHHHHHHHH-----HH
Q 003157 285 MGVKSVNVALDMKAISGGGAGFGPGGIRGSGTPQIGGGVKAREGLWQRMGTCMD--------QLHSAVVAVWH-----LQ 351 (843)
Q Consensus 285 ~~~k~i~~ald~~~Ls~~~~~~~~~~~r~~~~p~~~~~~~~~~~lw~~le~~~d--------~i~~~~~~v~~-----Le 351 (843)
....++...|..+. +.+..+ ...||+ +|-..+....|..+. .-++.|++-+| |+
T Consensus 240 qqL~ey~~IF~en~--E~a~LD--kidrRY---------~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~ 306 (793)
T KOG2180|consen 240 QQLEEYEQIFRENE--EAASLD--KLDRRY---------AWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLE 306 (793)
T ss_pred HHHHHHHHHHhccH--hhhhhh--hHHHHH---------HHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHH
Confidence 99999999998643 222221 234565 664433333333221 11333444333 88
Q ss_pred HHHhhCCCCCcchhhHHHHHhcCCCcchHHHHHHHHHHHHH-------HHHHH--HhcCchhhhHhhhchhhHHHHHHHH
Q 003157 352 RVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEGLVKAFAN-------QMKSA--FTASSFVKEIFTSGYPKLLSMIENL 422 (843)
Q Consensus 352 ~vL~kkrdp~t~~~fL~~l~~~~~~sl~~~FW~~la~~~~~-------~~~~a--~~~s~~v~q~L~~~yPkllrl~~~l 422 (843)
++|.+.++-.+...|+-.+. =+..|..-+.+.|.. +.+.- .+....-..++.+.|.+.|.+|.+.
T Consensus 307 ~Il~~~~~~~~v~lll~Alq------~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~ 380 (793)
T KOG2180|consen 307 SILKRRKKEPDVKLLLFALQ------STLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIES 380 (793)
T ss_pred HHHHHhhhCccHHHHHHHHH------HHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhH
Confidence 88887655556677777776 344566666655531 00000 0000011234444455555444433
Q ss_pred HHHHhhhhcccccCCCCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcC----CCCC-----CCCCCCHHHHHHHHH
Q 003157 423 LERISRETDVKGVLPAISPEGKGQMIAAIEIFQTAFLTLCLTRLSDLVNSVF----PMSS-----RGSVPSKEQISRILS 493 (843)
Q Consensus 423 ~~rl~~~~~~~g~~~~~~~e~~~~l~~sl~~fe~ayLsrs~~Rl~~~v~~~F----p~~~-----r~~~Ps~~el~~i~r 493 (843)
. + +-++.++|-.-..+ +++. -.++||+.+++..+|
T Consensus 381 q--------------------e----------------k~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Yk 424 (793)
T KOG2180|consen 381 Q--------------------E----------------KELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYK 424 (793)
T ss_pred H--------------------H----------------HHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHH
Confidence 3 1 12222333222221 1111 125899999999998
Q ss_pred HHHHHHHH-hcC-ChHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccCCC--------------CCHHH-HHHHHHHH
Q 003157 494 RIQEEIEA-VHM-DGRLTLLVLREIGKVLILVAERAEYQISTGPEARQIPGP--------------ATSAQ-IKNFALCQ 556 (843)
Q Consensus 494 ~i~~EL~~-a~~-d~~L~~~v~~~v~k~l~l~~~k~e~~l~~~~~a~qv~~~--------------~t~~Q-~~N~~L~n 556 (843)
-...+-.. ... ||.+...+ .+.||++.|+.||...........|++.+ -|..| ..-|.+.+
T Consensus 425 kcltq~~~Ls~n~dpl~~~~~--~f~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~ls 502 (793)
T KOG2180|consen 425 KCLTQCSELSENNDPLIALLA--VFSKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILS 502 (793)
T ss_pred HHHHHHHHhccCCchHHHHHH--HHHHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHH
Confidence 76654443 334 88884444 99999999999999866544333332111 12233 36677889
Q ss_pred HHHHHHHHHHHhhcCCcHHHH----Hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCC
Q 003157 557 HLQEIYTRMSSMITGLPPIAA----EV--LSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNN 630 (843)
Q Consensus 557 ~l~~~~~~l~~~l~~~p~~~~----~~--l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~ 630 (843)
++.||-...-++..++-.... .. ++...+.+..+....++=++..+..+|++-+..|-...|-... .+..
T Consensus 503 t~e~~~~tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~----~vgD 578 (793)
T KOG2180|consen 503 TAEYCLATTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLE----GVGD 578 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhc----Cccc
Confidence 999998887777655322211 11 5566777788888888999999999999988888877776432 2338
Q ss_pred CChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHH
Q 003157 631 ASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELE 710 (843)
Q Consensus 631 ~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE 710 (843)
+|+|+..++.++..+...+..-+.+.. .|...||.+ +|...+..|+.+.-.++|.+..|.+||..|...++
T Consensus 579 Qss~v~s~~~h~~q~~~~i~~~~~~~r-----~~f~~fc~r----~a~~f~~kf~~~l~R~k~~s~~g~EQLlldt~slK 649 (793)
T KOG2180|consen 579 QSSYVSSLNFHLSQFVPLIRDALALDR-----KYFAQFCVR----LAASFIPKFLNVLFRAKPISVVGAEQLLLDTESLK 649 (793)
T ss_pred cchhhHHHHHHHHhhhHHHHHHhcccc-----chHHHhhHH----HHhhcchHHHHHHHHhhhHhhhHHHHHHHHHHHHH
Confidence 999999999999999988887776431 245555555 66666699999999999999999999999999999
Q ss_pred HHH
Q 003157 711 LAV 713 (843)
Q Consensus 711 ~aL 713 (843)
.++
T Consensus 650 ~~l 652 (793)
T KOG2180|consen 650 DAL 652 (793)
T ss_pred HHh
Confidence 986
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.78 E-value=7.7e-17 Score=180.91 Aligned_cols=324 Identities=18% Similarity=0.235 Sum_probs=253.2
Q ss_pred CCCCHHHHHHhHhcCCC----hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003157 65 PSFSSTSFSSAALSSGS----PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVR 140 (843)
Q Consensus 65 ~dFd~~~fan~lL~~~~----i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~ 140 (843)
|||||.+|.|.++++.. ++..+.+++..+.++|.+|...|... ...-.+.+..++.++..|..|...++
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q-------~~~~~~~~~~l~~a~~~i~~L~~~i~ 74 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQ-------SSSGQDAEEDLEEAQEAIQELFEKIS 74 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhccccccccHHHHHHHHHHHHHHHH
Confidence 89999999999999863 77788999999999999998666543 33345667778999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---CCchHHHHHHHHHHHHHHHhhcc-C
Q 003157 141 RVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEA---EPEKLDLTKAAQLHCEIVTMCKE-Y 216 (843)
Q Consensus 141 RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~---~~~~~dl~kaA~~l~EL~~Ll~~-~ 216 (843)
.+|.+..+-...|+..|..+++|+-|...|-.++. ..+||++++.+..+ -...++|.++|.++..+.+|++. .
T Consensus 75 ~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT---~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~ 151 (383)
T PF04100_consen 75 EIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSIT---TLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFK 151 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 88999999976431 01237899999999999999954 6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c----cchhhhhhHHHHhhhhcchHHHHHHHHHHHHHHHHHH
Q 003157 217 DLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGME---G----LNQAQVGTGLQVFYNLGELKVTVEHLVNKYKNMGVKS 289 (843)
Q Consensus 217 ~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~---~----~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~~~~k~ 289 (843)
++++|+-|..+...+...+..++.+....+..-+. . .....+..||.|...|| ++....++++|++...+.
T Consensus 152 ~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~--~~~r~~li~wf~~~qL~e 229 (383)
T PF04100_consen 152 PYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALG--PDVREELIDWFCNKQLKE 229 (383)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcC--chHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888765431 1 13467899999999999 889999999999999999
Q ss_pred HHHhhchhhhhcCCCCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHH-HHHHHHHHHHH----------------HHH
Q 003157 290 VNVALDMKAISGGGAGFGPGGIRGSGTPQIGGGVKAREGLWQRMGTCMD-QLHSAVVAVWH----------------LQR 352 (843)
Q Consensus 290 i~~ald~~~Ls~~~~~~~~~~~r~~~~p~~~~~~~~~~~lw~~le~~~d-~i~~~~~~v~~----------------Le~ 352 (843)
+..+|.... +.++.+ +..||+ +| +.+.-+.++ ++...++.-|+ |..
T Consensus 230 Y~~iF~~~~--e~~~Ld--~i~RRy---------~W----fkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~ 292 (383)
T PF04100_consen 230 YRRIFREND--EAASLD--NIDRRY---------AW----FKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSE 292 (383)
T ss_pred HHHHHcccc--cccchh--hHHHHH---------HH----HHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 999997433 333321 234555 55 334333332 23333444443 778
Q ss_pred HHhhCCCCCcchhhHHHHHhcCCCcchHHHHHHHHHHHHHH------HHHHHh---cCchhhhHhhhchhhHHHHHHHHH
Q 003157 353 VLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEGLVKAFANQ------MKSAFT---ASSFVKEIFTSGYPKLLSMIENLL 423 (843)
Q Consensus 353 vL~kkrdp~t~~~fL~~l~~~~~~sl~~~FW~~la~~~~~~------~~~a~~---~s~~v~q~L~~~yPkllrl~~~l~ 423 (843)
+|.+.++..+...||..+. -+..|...+++.|... .+.... ..+.....+++.|.++|.+|.+..
T Consensus 293 iL~~~~~~~dv~~Ll~aLq------~T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~q 366 (383)
T PF04100_consen 293 ILSKRKSELDVKLLLKALQ------KTLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQ 366 (383)
T ss_pred HHhhcCCCCcHHHHHHHHH------HHHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHH
Confidence 8888888888999999998 6778999999888321 111100 012344578889999999999877
No 5
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.62 E-value=9.6e-10 Score=134.13 Aligned_cols=640 Identities=15% Similarity=0.204 Sum_probs=336.8
Q ss_pred hhhcccCCCCCHHHHHHhHhcCCChh-----------hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHH
Q 003157 58 ILSAFLSPSFSSTSFSSAALSSGSPA-----------STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALS 126 (843)
Q Consensus 58 ~~~~FL~~dFd~~~fan~lL~~~~i~-----------~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~ 126 (843)
||+.|.+++|||+.+.|..+++.+.+ +-..||+--++++...|++....=-..+=.-..+++.++....
T Consensus 1 d~s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~ 80 (766)
T PF10191_consen 1 DLSAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAA 80 (766)
T ss_pred ChhhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 68999999999999999999886422 2235666666666666654433322111123344555556566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHH
Q 003157 127 TVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLH 206 (843)
Q Consensus 127 ~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l 206 (843)
.++..+..++..++.+...-..--..+...-+.-.|++.|.+.||.+-..-.|.+.++..+.. .|+.++|..+
T Consensus 81 ~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~-------~d~~~~a~~l 153 (766)
T PF10191_consen 81 SLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFES-------GDIAKIADRL 153 (766)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-------CCHHHHHHHH
Confidence 666667676666666666555556667777778888889999999999988899999888754 5789999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHHHHH
Q 003157 207 CEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYKNMG 286 (843)
Q Consensus 207 ~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~~~ 286 (843)
.++..-+.- |.++.=-++....++..++++...++-.|.+.+...+...+..-..||..+|-.+. +.+-|...-
T Consensus 154 ~~m~~sL~~--l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~----l~~~Y~~~r 227 (766)
T PF10191_consen 154 AEMQRSLAV--LQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQ----LEQYYCKCR 227 (766)
T ss_pred HHHHHHHHH--HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Confidence 999876643 33343335566678899999999999999999999998889999999999986554 334444444
Q ss_pred HHHHHHhhchhhhhcCCCCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhC
Q 003157 287 VKSVNVALDMKAISGGGAGFGPGGIRGSGTPQIGGGVKAREGLWQRMGTCMDQLHSAVVAVWH---------LQRVLSKK 357 (843)
Q Consensus 287 ~k~i~~ald~~~Ls~~~~~~~~~~~r~~~~p~~~~~~~~~~~lw~~le~~~d~i~~~~~~v~~---------Le~vL~kk 357 (843)
...+...-+-. . .. . +. .+...|-..+...+-..+.+-...|.+|.- |-.+|...
T Consensus 228 ~~~l~~~W~~~--~---~~---~--~~------~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L 291 (766)
T PF10191_consen 228 KAPLQRLWQEY--C---QS---D--QS------QSFAEWLPSFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSAL 291 (766)
T ss_pred HHHHHHHHHHH--h---hh---c--cc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 43343332211 1 00 0 00 011233222222222222111112222210 11111111
Q ss_pred CCCCcchhhHHHHHhcCCCc----chHHHHHHHHHHHHHHHHHHHhc----Cc--hh-----------------------
Q 003157 358 RDPFTHVLLLDEVIQEGDPM----LTDRVWEGLVKAFANQMKSAFTA----SS--FV----------------------- 404 (843)
Q Consensus 358 rdp~t~~~fL~~l~~~~~~s----l~~~FW~~la~~~~~~~~~a~~~----s~--~v----------------------- 404 (843)
. | +-...++..+....+. ....+| .++..|.+.++..+.. .. .+
T Consensus 292 ~-P-S~~~~l~~al~~~~~~~~L~~L~~l~-~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF~~~q~~Yg~lE~ 368 (766)
T PF10191_consen 292 Q-P-SFPSRLSSALKRAGPETKLETLIELY-QATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPFKPYQQRYGELER 368 (766)
T ss_pred C-c-cHHHHHHHHHhhcCchhhHHHHHHHH-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 0011112211111110 011111 2233333344333332 01 11
Q ss_pred --------------------hhHhhhchhhHHHHHHHHHHHHhhhhcccccCCCCCcchhHHHHHHHHHHHHHHHHhhhh
Q 003157 405 --------------------KEIFTSGYPKLLSMIENLLERISRETDVKGVLPAISPEGKGQMIAAIEIFQTAFLTLCLT 464 (843)
Q Consensus 405 --------------------~q~L~~~yPkllrl~~~l~~rl~~~~~~~g~~~~~~~e~~~~l~~sl~~fe~ayLsrs~~ 464 (843)
-+.|...-||+..+.++...|+..-|+--| ...++.++..+=..|++.
T Consensus 369 ~~L~~~L~~l~~~~~~~~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~---------~~~Ll~Ald~~~~~y~~~--- 436 (766)
T PF10191_consen 369 RFLSAQLSALDLESAELSDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYG---------VPGLLKALDSIFSQYLSS--- 436 (766)
T ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHHHHHH---
Confidence 122333344444444444444444332111 223445555444444433
Q ss_pred hhhhhhhhcCCC-CCCCCCCCH----HHHHHHHHHHHHHHHHhcCChHHHHHH---HHHHHHHHHHHHHHHHh-----hc
Q 003157 465 RLSDLVNSVFPM-SSRGSVPSK----EQISRILSRIQEEIEAVHMDGRLTLLV---LREIGKVLILVAERAEY-----QI 531 (843)
Q Consensus 465 Rl~~~v~~~Fp~-~~r~~~Ps~----~el~~i~r~i~~EL~~a~~d~~L~~~v---~~~v~k~l~l~~~k~e~-----~l 531 (843)
+...+...-.. +.. ..|.. +|- ..++...+=|..| ..|...+ -+.+...+..++.+.-. ..
T Consensus 437 -~~~~l~~lr~~~~~~-~~~~~~~~~eDW-s~fQ~aL~LL~~~---g~l~~rl~~fE~~l~~~l~~~~~~l~~~~~~~~~ 510 (766)
T PF10191_consen 437 -LTATLRSLRKSCGLD-STATSSASSEDW-SLFQNALQLLQTC---GELLSRLSQFEQSLRSRLLELASKLLSSSFSSSS 510 (766)
T ss_pred -HHHHHHHHHHHcCCC-cccccccccccH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Confidence 22222211100 000 01111 110 1111111111111 1111111 11111112122222100 00
Q ss_pred ccCCCcc-c--cCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCcH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 532 STGPEAR-Q--IPGPATSAQIKNFALCQHLQEIYTRMSSMITGLPP--IAAEVLSPSLGTIYGVACDSVTSLFQAMIDGL 606 (843)
Q Consensus 532 ~~~~~a~-q--v~~~~t~~Q~~N~~L~n~l~~~~~~l~~~l~~~p~--~~~~~l~~sl~~~~~~~~~~v~pL~~s~~~~i 606 (843)
.++ ++. . -...+++....|....-.+..+...+..+...... ....+|..+...+..++..+-.-.++.+..-|
T Consensus 511 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i 589 (766)
T PF10191_consen 511 DTG-EAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDVLFSPI 589 (766)
T ss_pred ccc-cccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0 00112232222222111112222222222211111 11234666677777777788888888888888
Q ss_pred HHHHHHhcc-ccCccccc------C-ccCCCCCChhHHHHHHHHHHHHHHhhcccCCCC----------CCcc---c---
Q 003157 607 ESCILQIHD-QNFSVLGM------D-AAMDNNASPYMEELQKCILHFRSEFLSRLLPSS----------ANTT---T--- 662 (843)
Q Consensus 607 e~il~~MH~-e~~~~~~~------~-~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~----------~~~~---~--- 662 (843)
...|..|.. ..|+..+. + +.-...|+.||..+-++|-.+=. +|..|.... .+.+ .
T Consensus 590 ~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq-~LEp~~~~~~~al~~Al~~~~~~~~~~~~~ 668 (766)
T PF10191_consen 590 RQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQ-QLEPFAESDNSALAFALHAGKLPYPPESDE 668 (766)
T ss_pred HHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHH-hhhhhhcCcchHHHHHHHhcCCCCCCCccc
Confidence 888888876 46766211 1 11234678899999888876654 344332111 0000 0
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHcccCCCccccc-hhHHHHHhhhhhccC
Q 003157 663 --AGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLG-APYRALRAFRPLIFL 739 (843)
Q Consensus 663 --~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs~~l~~~~~lG-~~y~~LRafR~LLf~ 739 (843)
+-...+.+.|+..+|.++...|+.-+--+.-|++.|+-||+.|+..|-..| +.|| .+-..|..+..||=.
T Consensus 669 ~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~nVl-------~aLg~~~~~~L~~~~~ll~~ 741 (766)
T PF10191_consen 669 EAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSNVL-------SALGLSPPPNLQQLVTLLKA 741 (766)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-------HHhCCCCCHHHHHHHHHHcC
Confidence 112367889999999999999999999999999999999999999998888 4555 456889999999999
Q ss_pred CchhhccCCCCCCCChHHH
Q 003157 740 ETSQLGASPLLQDLPPSVI 758 (843)
Q Consensus 740 ~~~~i~~~~~~~~lp~~~v 758 (843)
++++...... ++|+.++
T Consensus 742 ~~~~~~~~~~--~~~~~~~ 758 (766)
T PF10191_consen 742 PPDQYAQVAK--GLPRRLV 758 (766)
T ss_pred CHHHHHHHHh--cCCHHHH
Confidence 9988876543 4555544
No 6
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3e-11 Score=137.08 Aligned_cols=289 Identities=17% Similarity=0.202 Sum_probs=206.8
Q ss_pred hcCC-hHHHHHHHHHHHHHH-HHHHHHHHhhcccCCCccccCCCCCHHHHHHH-HHHHHHHHHHHHHHHhhcCCcHHHHH
Q 003157 502 VHMD-GRLTLLVLREIGKVL-ILVAERAEYQISTGPEARQIPGPATSAQIKNF-ALCQHLQEIYTRMSSMITGLPPIAAE 578 (843)
Q Consensus 502 a~~d-~~L~~~v~~~v~k~l-~l~~~k~e~~l~~~~~a~qv~~~~t~~Q~~N~-~L~n~l~~~~~~l~~~l~~~p~~~~~ 578 (843)
.++| ..|...+.++.-|+| +.||.++++.+..+-+-.-...-.|..+..|+ .|+....-+...+...+.....+-+
T Consensus 347 kkrDh~~l~~e~sk~gd~cI~~rfw~~l~qal~sqfd~a~~~~fltq~f~~gypKLl~~a~gL~kRl~~~~p~~~~~~k- 425 (797)
T KOG2211|consen 347 KKRDHAELSQEMSKNGDKCIPERFWKKLEQALHSQFDDALLGDFLTQNFMTGYPKLLQTADGLTKRLPAESPSVTAIQK- 425 (797)
T ss_pred hhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHHHHhHHHHhhcccCCccccHH-
Confidence 3556 778889999999999 99999999988865432222223477777777 7776665555555442221111111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCC
Q 003157 579 VLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSA 658 (843)
Q Consensus 579 ~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~ 658 (843)
..+..++.|+=.++..-| ++||-+ |-. ++.+.-|||+||-.+|+|+..+ +....+
T Consensus 426 ----------e~l~a~~ap~e~aylSkc----aR~n~~-fp~------~gr~~lPs~eeld~~I~hi~~e-l~av~~--- 480 (797)
T KOG2211|consen 426 ----------ETLDAIVAPVENAYLSKC----ARMNVE-FPG------MGRSVLPSMEELDTYINHIDME-LAAVSR--- 480 (797)
T ss_pred ----------HHHHHHHHHHHHHHHHHH----HHhhee-cCC------CCCCCCCcHHHHHHHHHHHHHH-HHHhhH---
Confidence 223345556555554433 368865 321 2335568999999999999985 666653
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHcccCCCccccchhHHHHHhhhhhcc
Q 003157 659 NTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIF 738 (843)
Q Consensus 659 ~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs~~l~~~~~lG~~y~~LRafR~LLf 738 (843)
-.+.+.++..++.+||..|+..+-+.+|.+.+.|.-+--|....--.+ .+|.-+..+|++-|.+ .||
T Consensus 481 -------d~rlTlavs~~~ak~i~~l~~kae~qistg~D~rQvigp~ts~q~rnv-~l~n~l~kyhdsvr~~-----aI~ 547 (797)
T KOG2211|consen 481 -------DVRLTLAVSQIAAKVIDSLILKAELQISTGSDERQVIGPDTSRQLRNV-RLMNWLSKYHDSVRLL-----AIF 547 (797)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCchHHHHHHH-HHHHHHHHhhhhhHHH-----HHH
Confidence 356888999999999999999999999999999977766666555555 2443344455555542 223
Q ss_pred CCchhhccCCCCCCCChHHHHHHHHccCCCCCCChhhhcCCCHHHHHHHhhcCChHhHHHHHHHHHHHHHHHHHhcCCCC
Q 003157 739 LETSQLGASPLLQDLPPSVILHHLYSRGPDELQSPLQRNKLTPLQYSLWLDSQGEDQIWKGIKATLDDYAAKVRARGDKE 818 (843)
Q Consensus 739 ~~~~~i~~~~~~~~lp~~~vl~hL~srap~~L~sPh~~~~ws~~~y~~Wld~h~e~e~l~~i~~~L~~y~~~v~~~~~~~ 818 (843)
-..++.. ..++.+-..++-..+++-+|.++.-|.....|++..|..|..+|.+..++.+..+-+..|..++-.++...
T Consensus 548 ~s~e~av--lpl~t~~~dilesiI~tis~~~ls~~~lss~~~pd~~~s~YmeelQ~fVlrf~s~~~s~f~~s~~~~~~~~ 625 (797)
T KOG2211|consen 548 GSDEDAV--LPLETVKKDILESIIVTISPSELSLPNLSSKWTPDEYVSWYMEELQLFVLRFLSGLVSSFNSSVISRGQQH 625 (797)
T ss_pred Hhhhhhh--hHHHHHHHHHHHHHHhhcCHhhcCCcccccccCCCcchhHHHHHHHHHHHHHHHHHHHhccHHHhhccccc
Confidence 2222211 12233456677778889999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHH
Q 003157 819 FSPVYPLMLQLGS 831 (843)
Q Consensus 819 ~~~~y~~m~~~~~ 831 (843)
|..-||+......
T Consensus 626 ~~~t~~~akr~ve 638 (797)
T KOG2211|consen 626 YVDTYPRAKRIVE 638 (797)
T ss_pred chhhHHHHHHHHH
Confidence 9999999887665
No 7
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.14 E-value=3.2e-08 Score=108.08 Aligned_cols=229 Identities=14% Similarity=0.206 Sum_probs=203.3
Q ss_pred hhcccCCCCCHHHHHHhHhcCCC-----hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003157 59 LSAFLSPSFSSTSFSSAALSSGS-----PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVS 133 (843)
Q Consensus 59 ~~~FL~~dFd~~~fan~lL~~~~-----i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~ 133 (843)
-+.|.++||||..|.=+-+.... +....+||....+.|+++|.++|..|++...+....+.++++.+...-..+.
T Consensus 5 ~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~ 84 (291)
T PF10475_consen 5 PAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICK 84 (291)
T ss_pred cHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999998755555441 4455789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhh
Q 003157 134 SLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMC 213 (843)
Q Consensus 134 ~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll 213 (843)
+++..++++++.+..+--.|-...++-+|+....+.|..+..+...-.+++.+++. .|+..|-.++.+...++
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~-------~dy~~Al~li~~~~~~l 157 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEE-------GDYPGALDLIEECQQLL 157 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999865 56999999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHh
Q 003157 214 KEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYKNMGVKSVNVA 293 (843)
Q Consensus 214 ~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~~~~k~i~~a 293 (843)
+ .+.++..|++....++.....|.......|.+-...+++..-..-..++.-||......+.+...|.+.+......+
T Consensus 158 ~--~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~v 235 (291)
T PF10475_consen 158 E--ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSV 235 (291)
T ss_pred H--hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 58999999999999999999999999999999888999988888888888999777777777788888888877776
Q ss_pred hch
Q 003157 294 LDM 296 (843)
Q Consensus 294 ld~ 296 (843)
+..
T Consensus 236 v~~ 238 (291)
T PF10475_consen 236 VRS 238 (291)
T ss_pred HHH
Confidence 653
No 8
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.8e-05 Score=86.79 Aligned_cols=207 Identities=14% Similarity=0.214 Sum_probs=171.8
Q ss_pred hcccCCCCCHHHHHHhHhcCCChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003157 60 SAFLSPSFSSTSFSSAALSSGSPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSV 139 (843)
Q Consensus 60 ~~FL~~dFd~~~fan~lL~~~~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~ 139 (843)
.-|+.+|||+..|.+..=......+--..|.--+.-|.+.|=++|..-|-|.++--+.+-.++..+..|+.-+.+|...+
T Consensus 26 ~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei 105 (705)
T KOG2307|consen 26 TEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEI 105 (705)
T ss_pred hhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHH
Confidence 57999999999999998666666666677778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CC--CchHHHHHHHHHHHHHHHhhccC
Q 003157 140 RRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAE-AE--PEKLDLTKAAQLHCEIVTMCKEY 216 (843)
Q Consensus 140 ~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~-~~--~~~~dl~kaA~~l~EL~~Ll~~~ 216 (843)
.-+|.-|.+--..++.+...+.-+.+-...|++.+.++.-+.+|...+.... ++ ....++-|+|.-++++.-....
T Consensus 106 ~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnqlkf~a~h- 184 (705)
T KOG2307|consen 106 KSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQLKFHASH- 184 (705)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHHHHH-
Confidence 9999999999999998999999999999999999999999999998884421 11 1234688889888888776533
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcc
Q 003157 217 DLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGE 270 (843)
Q Consensus 217 ~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~ 270 (843)
+.|. ++.+..+.|...+..+-.-....+.+|+++ ....+.+||.++-.|+.
T Consensus 185 -~k~~-l~p~~e~ria~~~~~L~qsl~~lf~eglqs-a~~~l~nclriYatld~ 235 (705)
T KOG2307|consen 185 -LKGS-LFPHSEERIAAEKIILSQSLAVLFAEGLQS-AAGDLQNCLRIYATLDL 235 (705)
T ss_pred -hhcc-cCcchhhHHhhHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHhh
Confidence 3444 666677777777766666667777889854 77889999999888874
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.005 Score=73.27 Aligned_cols=175 Identities=15% Similarity=0.182 Sum_probs=147.9
Q ss_pred CHHHHHHhHhcCCChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003157 68 SSTSFSSAALSSGSPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELS 147 (843)
Q Consensus 68 d~~~fan~lL~~~~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ 147 (843)
|+--+...++-........+||+..|..=|++|++.-..||.+.+.....+....+.++.+++.+..++..+.-.-++++
T Consensus 32 ~~gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLi 111 (800)
T KOG2176|consen 32 DWGPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELI 111 (800)
T ss_pred hhhhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34445566666666777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhh-cc-CCCCchHHHH
Q 003157 148 DPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMC-KE-YDLSGIDVIN 225 (843)
Q Consensus 148 ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll-~~-~~L~~I~vV~ 225 (843)
.--+.+.....+=+|+..|.++++.|.+.+.+..|+++|+++ +.+..|=+++.+|+..+ .. .++.-..++.
T Consensus 112 v~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~-------kqyy~aLktle~lE~~yL~~~~~~~~~~~i~ 184 (800)
T KOG2176|consen 112 VKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSE-------KQYYPALKTLESLEKVYLPRVSNFRFLIVIQ 184 (800)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHhcccchhhHHHh
Confidence 999999999999999999999999999999999999999965 56899999999999886 32 3455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003157 226 EELLWVKEVGEKLRNEAMKVLEGGMEG 252 (843)
Q Consensus 226 ~~~~~v~~~r~~v~~~a~~~L~~gl~~ 252 (843)
..+++ .+..+++.+...+...+.+
T Consensus 185 ~~Ip~---ik~~i~~~~~~~~~e~L~~ 208 (800)
T KOG2176|consen 185 NRIPF---IKEVIKSKSMSDFREWLEN 208 (800)
T ss_pred hcchH---HHHHHHHHHHHHHHHHHHH
Confidence 66664 4556777777777766543
No 10
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.26 E-value=0.028 Score=67.86 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=155.3
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHhhchHHHHHHHHH
Q 003157 81 SPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQS--SVRRVRSELSDPYKSIKSKTI 158 (843)
Q Consensus 81 ~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~--s~~RLr~~I~ePy~~i~~~t~ 158 (843)
++...+.+|...++++..++++.|..+|.+...++...+++......+...|..+.. .-+-++.++.+-.++++...+
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~ 90 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKR 90 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 466778999999999999999999999999999999988887777777777744433 245678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHH
Q 003157 159 QLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEY---DLSGIDVINEELLWVKEVG 235 (843)
Q Consensus 159 ~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~---~L~~I~vV~~~~~~v~~~r 235 (843)
+|+......++|.+...+=...+.++..+.+ +++..||..+.+++.++++. .....++++.........+
T Consensus 91 eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~-------~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr 163 (593)
T PF06248_consen 91 ELEENEQLLEVLEQLQEIDELLEEVEEALKE-------GNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELR 163 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHH
Confidence 9999999999999877755555555544322 67999999999999999763 4556788888888888888
Q ss_pred HHHHHHHHHHHHhhhc------------------c----cchhh--hhhHHHHhhhhcchHHHHHHHHHHHHHHH
Q 003157 236 EKLRNEAMKVLEGGME------------------G----LNQAQ--VGTGLQVFYNLGELKVTVEHLVNKYKNMG 286 (843)
Q Consensus 236 ~~v~~~a~~~L~~gl~------------------~----~n~~~--v~saLqv~~nLg~L~~~v~~lv~~~~~~~ 286 (843)
..+.....+.+.+-+. . .+... +...++.++.||.|...+..+-..+.+.+
T Consensus 164 ~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~i 238 (593)
T PF06248_consen 164 ENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHI 238 (593)
T ss_pred HHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8888888777754211 0 12223 78999999999999888777766654433
No 11
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=98.25 E-value=0.035 Score=68.41 Aligned_cols=594 Identities=13% Similarity=0.154 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccccCCCchHHHHHHHH
Q 003157 127 TVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLS--KKLRDLIAPAEAEPEKLDLTKAAQ 204 (843)
Q Consensus 127 ~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~--kRL~~~~~~~~~~~~~~dl~kaA~ 204 (843)
.+-...+.|...+..+-.++...=++++...+.=.|-..+.+|.+.-..|..-. ..|....... .+..+..++|+
T Consensus 3 ~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~---~~~~~~~~~A~ 79 (710)
T PF07393_consen 3 EAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTF---TDPEDPEEAAK 79 (710)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcc---cCccchHHHHH
Confidence 455667777777778888888888888888888888888888888866655533 2444332111 12256899999
Q ss_pred HHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHH
Q 003157 205 LHCEIVTMCKEY-DLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYK 283 (843)
Q Consensus 205 ~l~EL~~Ll~~~-~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~ 283 (843)
++..|..+.+.. +..+- ..-...|+.....+.+.+-+.+..+-...|...+..+-.|++.++-=..+|+..|+..-
T Consensus 80 il~~L~~ls~~~~~~~~~---~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~k~~ 156 (710)
T PF07393_consen 80 ILRNLLRLSKELSDIPGF---EEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFINKHE 156 (710)
T ss_pred HHHHHHHHHHhcCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhCh
Confidence 999999998765 44333 33344555666666666677777777777888888888888888865556655555210
Q ss_pred HHH-HHHHHH--hhchhhhhcCCCCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 003157 284 NMG-VKSVNV--ALDMKAISGGGAGFGPGGIRGSGTPQIGGGVKAREGLWQRMGTCMDQLHSAVVAVWH----------- 349 (843)
Q Consensus 284 ~~~-~k~i~~--ald~~~Ls~~~~~~~~~~~r~~~~p~~~~~~~~~~~lw~~le~~~d~i~~~~~~v~~----------- 349 (843)
=.. ...+.. .+.-....+.. ........ ..+..++.+++++...|..-+.
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~l--------~d~~~~~~--------~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~ 220 (710)
T PF07393_consen 157 FFIDEDQLDESNGFEDEEIWEKL--------SDPDSHPP--------INEESLDAFFEDIRDVINEESKIIDRVFPNPEP 220 (710)
T ss_pred hhhhhhhhccccccchhHHHHhc--------cCcccccc--------cchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHH
Confidence 000 011100 00000000000 00001111 1134556666655555544443
Q ss_pred -----HHHHHhhCCCCCcchhhHHHHHhcCCCcchHHHHHHHHHHHH------HHHHHHHh---------cCchhhhHhh
Q 003157 350 -----LQRVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEGLVKAFA------NQMKSAFT---------ASSFVKEIFT 409 (843)
Q Consensus 350 -----Le~vL~kkrdp~t~~~fL~~l~~~~~~sl~~~FW~~la~~~~------~~~~~a~~---------~s~~v~q~L~ 409 (843)
+|+|...+ -..|++.++......-...|++.+...+. +.++.... .+.++.+.+.
T Consensus 221 Vm~~fiervf~~~-----I~~~i~~lL~~a~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~ 295 (710)
T PF07393_consen 221 VMQKFIERVFEQV-----IQEYIESLLEEASSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVE 295 (710)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHH
Confidence 22222211 12344444443332234456655554433 22222211 1123334444
Q ss_pred hchhhHH--HHHHHHHHHH--------hhhhc-ccccCCCCCcchhHHHHHHHHHHHHH-------------HHHhhhhh
Q 003157 410 SGYPKLL--SMIENLLERI--------SRETD-VKGVLPAISPEGKGQMIAAIEIFQTA-------------FLTLCLTR 465 (843)
Q Consensus 410 ~~yPkll--rl~~~l~~rl--------~~~~~-~~g~~~~~~~e~~~~l~~sl~~fe~a-------------yLsrs~~R 465 (843)
.-|-+++ .-|.+...+- -..++ .+.--........+.-.+....|.++ +++.....
T Consensus 296 ~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T PF07393_consen 296 SLFEPYLEDDEYLEEEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSS 375 (710)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhc
Confidence 4444444 2222111110 00000 00000000000000000111111111 11111110
Q ss_pred hhhhhhh--------------cCC----CCCCCCCCCHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHH
Q 003157 466 LSDLVNS--------------VFP----MSSRGSVPSKEQISRILSRIQEEIEAVH--MDGRLTLLVLREIGKVLILVAE 525 (843)
Q Consensus 466 l~~~v~~--------------~Fp----~~~r~~~Ps~~el~~i~r~i~~EL~~a~--~d~~L~~~v~~~v~k~l~l~~~ 525 (843)
..++... ... .+.. .+.|-+-+..+++...+-+..|. .+|.= +.+++...+..+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~a~~il~~~~es~~R~~~l~~~~~---~~~~~~~if~~Ll~ 451 (710)
T PF07393_consen 376 KLDRSQQQASLENNLDLAAKANIMSSNLEGID-SLLSLEVAENILQWNKESLGRCLELSPPSD---LPKNCQEIFEILLQ 451 (710)
T ss_pred ccCcccccccccchhhhhcccccccccccccc-ccCCHHHHHHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHH
Confidence 0000000 000 0111 35677778888888888888873 22222 22222222222111
Q ss_pred HH---------H---hhcccCCCccccCCCCCHHHHHHHHHHHH----HH-HHHHHHHHhhcCCcHHHH---HhhhhhHH
Q 003157 526 RA---------E---YQISTGPEARQIPGPATSAQIKNFALCQH----LQ-EIYTRMSSMITGLPPIAA---EVLSPSLG 585 (843)
Q Consensus 526 k~---------e---~~l~~~~~a~qv~~~~t~~Q~~N~~L~n~----l~-~~~~~l~~~l~~~p~~~~---~~l~~sl~ 585 (843)
-+ | ..+...+.+....-|+-. =..-+..++. +. ++...+..++...|.... .....-..
T Consensus 452 ~l~~~~i~~~lea~~~~~~~~~~~~~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~~~~~~~~~~~~~~k~~~~~ 530 (710)
T PF07393_consen 452 SLGEEHIEPALEAAYYKLSSQDIAESKEVPPLV-FLELINQADTILQLLQIFYKEELLPLIQSSPDFLNECIQKKKSFES 530 (710)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 11 1 111111111111101111 1122222222 11 112333344434443332 22334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccch
Q 003157 586 TIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGT 665 (843)
Q Consensus 586 ~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~ 665 (843)
.+..-+...++-.++.+...++.+|.+=...||.....+...+..+++.-++++++|..+.+..-..+..+
T Consensus 531 ~le~~v~~gL~~~i~~l~~~v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~--------- 601 (710)
T PF07393_consen 531 RLEEKVNAGLNKGIDVLMNWVEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGS--------- 601 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccch---------
Confidence 55566677788888999999999999555688986532222344789999999999998888766666532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHcccCCCccccchhHHHHHhhhhhccCCchhhc
Q 003157 666 ETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLG 745 (843)
Q Consensus 666 ~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs~~l~~~~~lG~~y~~LRafR~LLf~~~~~i~ 745 (843)
-.+..+..++.|....++.|.---+ ++-.|.++|..|+.+.-..+..+ ....+..-|.+||..-.|+-.+++.+.
T Consensus 602 --nl~~f~~elg~~l~~~l~~h~kk~~-vs~~Gg~~l~~Dl~~Y~~~~~~~--~~~~v~~~F~~L~~l~nl~~v~~~~l~ 676 (710)
T PF07393_consen 602 --NLDVFLQELGERLHRLLLKHLKKFT-VSSTGGLQLIKDLNEYQDFIRSW--GIPSVDEKFEALKELGNLFIVDPENLK 676 (710)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhCc-cCchhHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhheeecHHHHH
Confidence 2455577789999999999996665 89999999999999999999876 456788889999999999999988776
Q ss_pred c---CCCCCCCChHHHHHHHHccC
Q 003157 746 A---SPLLQDLPPSVILHHLYSRG 766 (843)
Q Consensus 746 ~---~~~~~~lp~~~vl~hL~sra 766 (843)
+ ....+.+.+..+--++=-|+
T Consensus 677 ~~~~~~~~~~~~~~~i~~fi~~R~ 700 (710)
T PF07393_consen 677 ELCREGQLGRFSPEEIYEFIQRRS 700 (710)
T ss_pred HHHhhccccCCCHHHHHHHHHHhh
Confidence 5 34445577777776665544
No 12
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.22 E-value=1.1e-05 Score=71.89 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=76.7
Q ss_pred ccCCCCCHHHHHHhHhcCCChhh---hHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003157 62 FLSPSFSSTSFSSAALSSGSPAS---TAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSS 138 (843)
Q Consensus 62 FL~~dFd~~~fan~lL~~~~i~~---~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s 138 (843)
|-+|+|||..|++++++..++.+ -.++|...|.+.+++|+..|-.||.+++.-+..|..++..+..++..+..++..
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999888544 458899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003157 139 VRRVRS 144 (843)
Q Consensus 139 ~~RLr~ 144 (843)
++++.+
T Consensus 81 ~~~l~~ 86 (87)
T PF08700_consen 81 IQSLQE 86 (87)
T ss_pred HHHhhc
Confidence 999865
No 13
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=98.07 E-value=2.8e-06 Score=82.04 Aligned_cols=127 Identities=22% Similarity=0.290 Sum_probs=46.5
Q ss_pred hcccCCCCCHHHHHHhHhcCCChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003157 60 SAFLSPSFSSTSFSSAALSSGSPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSV 139 (843)
Q Consensus 60 ~~FL~~dFd~~~fan~lL~~~~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~ 139 (843)
+.|..|+|||..|+.+.-+..++.+-.+.|..=.+.++.+|-++|.++|.+.++-.+.+...+..++.|+..+..++..+
T Consensus 6 ~~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v 85 (133)
T PF06148_consen 6 EEFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEV 85 (133)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999985555567777788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 140 RRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDL 186 (843)
Q Consensus 140 ~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~ 186 (843)
..++.++..--+.++......+++......|+....+...+.+|+.+
T Consensus 86 ~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 86 ESVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999999999999999999999999999999988888888888754
No 14
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00027 Score=79.11 Aligned_cols=201 Identities=13% Similarity=0.166 Sum_probs=157.1
Q ss_pred hhcccCCCCCHHHHHHhHhcCCChhhhH---HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 003157 59 LSAFLSPSFSSTSFSSAALSSGSPASTA---ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSL 135 (843)
Q Consensus 59 ~~~FL~~dFd~~~fan~lL~~~~i~~~l---~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L 135 (843)
+.+.=+++|||..|.-.+++-.++..-+ ...-..|..||.-++++|-+||...+.-+..|...++....+.+.+.+|
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L 104 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGL 104 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhH
Confidence 3445569999999999999888766554 4577889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhcc
Q 003157 136 QSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKE 215 (843)
Q Consensus 136 ~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~ 215 (843)
..++..|.+++..---.+..+...+++++++-.++|++..+.-|-+||+....+.+ +-.+-.-..+-...++
T Consensus 105 ~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~a-------YG~avR~~~~A~~~L~- 176 (636)
T KOG2346|consen 105 EEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPA-------YGAAVRGSSEATGKLR- 176 (636)
T ss_pred HHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccc-------cchhhccccccccchh-
Confidence 99999999999888888999999999999999999999999999999998875432 1111111222222221
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcc
Q 003157 216 YDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGE 270 (843)
Q Consensus 216 ~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~ 270 (843)
.+.+..-++.....-++.+..+.++....+.+|..+. ...+.|.+.+..+|.
T Consensus 177 -qY~~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga--~~raEAv~LLl~lg~ 228 (636)
T KOG2346|consen 177 -QYDGRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGA--QARAEAVVLLLQLGV 228 (636)
T ss_pred -hcCCCCcHHHhccchHHHHHHHHHHHHHHhccCCCCc--hhHHHHHHHHHhcCC
Confidence 2345556666666677888889999999998875433 235677777777775
No 15
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.35 Score=57.32 Aligned_cols=181 Identities=13% Similarity=0.186 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAE-HALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le-~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
++++...-+.+|++| +.||+|...++... ..++...+.+.-.....+.+...|..-...+++.....+.|+
T Consensus 40 le~~~~ee~~~~~~L--------~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lD 111 (773)
T KOG0412|consen 40 LERIAREEARVDKDL--------EALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAETVSGKVRALD 111 (773)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555 46888877777433 567888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhcc-------CCCCchHHHHHHHHHHHHHHHH
Q 003157 165 RTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKE-------YDLSGIDVINEELLWVKEVGEK 237 (843)
Q Consensus 165 ~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~-------~~L~~I~vV~~~~~~v~~~r~~ 237 (843)
.+...+..|.-|+.=++-|+.++++....-+..|+-+||..+++...+-+. .-..+..-|.+-...++.+.++
T Consensus 112 la~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~ 191 (773)
T KOG0412|consen 112 LAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHH
Confidence 999999999999999999998886643212357999999999999887321 1223334456666789999999
Q ss_pred HHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHH
Q 003157 238 LRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVT 274 (843)
Q Consensus 238 v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~ 274 (843)
+..-..+.+.......+..++.-=...|=-+|.=.+-
T Consensus 192 L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eG 228 (773)
T KOG0412|consen 192 LSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEG 228 (773)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhh
Confidence 9999999999999999999998888888888863333
No 16
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.11 E-value=0.014 Score=64.53 Aligned_cols=239 Identities=14% Similarity=0.183 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc-CChH---HHHHHHHHHHHHHHHHHHHHHh-hcccCCCccccCCCCCHHHHHHHHHH
Q 003157 481 SVPSKEQISRILSRIQEEIEAVH-MDGR---LTLLVLREIGKVLILVAERAEY-QISTGPEARQIPGPATSAQIKNFALC 555 (843)
Q Consensus 481 ~~Ps~~el~~i~r~i~~EL~~a~-~d~~---L~~~v~~~v~k~l~l~~~k~e~-~l~~~~~a~qv~~~~t~~Q~~N~~L~ 555 (843)
.+|=+..+-.+.+.|.+-++.+- +-.. -...+-..+.|.++.+..++-. .|..- +..+.+-+|. ++++
T Consensus 27 ~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~-----i~~~~~l~qi--~Qi~ 99 (311)
T PF04091_consen 27 KLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSK-----IRSSLNLSQI--VQIV 99 (311)
T ss_dssp -SSSBTHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HT-TS-HHHH--HHHH
T ss_pred eCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCHHHH--HHHH
Confidence 46767777788888888888872 2222 2356777888888877666322 22210 0011234442 3333
Q ss_pred HHHHHH-------HHHHHHhhcCCcHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccC
Q 003157 556 QHLQEI-------YTRMSSMITGLPPI-AAEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAM 627 (843)
Q Consensus 556 n~l~~~-------~~~l~~~l~~~p~~-~~~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~ 627 (843)
..+.|+ ...+.++. +.+.. ..++-..+.+.+......+-.-++..+..-|+..+ .|-+-||.... +
T Consensus 100 iNl~~le~Ac~~le~~l~~~~-~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l-ela~yDW~~~~----~ 173 (311)
T PF04091_consen 100 INLEYLEKACKELEEFLSSLR-GIPQSAGGHIRLKATKMFKDARKAAEKRIFELVNSKIDEFL-ELAEYDWTPTE----P 173 (311)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH-T----------------S---TTHHHHHHHHHHHHHHHHHH-TT--TT----------
T ss_pred HhHHHHHHHHHHHHHHHHHHc-CCCccchHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccceecCC----C
Confidence 334444 33344333 22221 11111233344555556667788888888999888 77777777543 3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHH
Q 003157 628 DNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMA 707 (843)
Q Consensus 628 ~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a 707 (843)
..++|.||.|+..|+.-.-+..+..+++. .....+..++..++.+.+..++. -=++-++.+|-..+..|+.
T Consensus 174 ~~~ps~yi~dli~fL~~~f~s~l~~LP~~-------v~~~~~~~a~~his~~l~~~Ll~--~~vk~in~~al~~~~~Dv~ 244 (311)
T PF04091_consen 174 PGEPSDYINDLIQFLETTFSSTLTNLPPS-------VKQLVYFSACDHISESLLDLLLS--DDVKRINMNALQNFDLDVK 244 (311)
T ss_dssp --S--HHHHHHHHHHHHHHHTTTTTSH-H-------HHHHHHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHHHHHhcC--CcccccCHHHHHHHHHHHH
Confidence 45799999999999998887777777533 45567777888888777776542 3477799999999999999
Q ss_pred HHHHHHcccCC---CccccchhHHHHHhhhhhccCCc
Q 003157 708 ELELAVGQNLF---PVEQLGAPYRALRAFRPLIFLET 741 (843)
Q Consensus 708 ~LE~aLs~~l~---~~~~lG~~y~~LRafR~LLf~~~ 741 (843)
+||.-....-. +...|...+..||-+=-|+-.+.
T Consensus 245 ~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~ 281 (311)
T PF04091_consen 245 YLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDD 281 (311)
T ss_dssp HHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH---
T ss_pred HHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCC
Confidence 99998865522 23456677777777776666553
No 17
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.95 E-value=0.038 Score=54.05 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=92.0
Q ss_pred hhhhcccCCCCCHHHHHHhHhcCCC--hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 003157 57 PILSAFLSPSFSSTSFSSAALSSGS--PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSS 134 (843)
Q Consensus 57 ~~~~~FL~~dFd~~~fan~lL~~~~--i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~ 134 (843)
.++..++.+||+|...|=.++-.++ ......++...-+.+++.|+..|..||..+=+....-. .|...|..
T Consensus 11 ~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~-------~i~~~i~~ 83 (142)
T PF04048_consen 11 DEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYS-------QILSSISE 83 (142)
T ss_pred HHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4778889999999999999998887 44567899999999999999999999998865444333 33344445
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 135 LQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLR 184 (843)
Q Consensus 135 L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~ 184 (843)
-+..+..||..+.+-=..+......|++|+...--...+++.|.-+..|+
T Consensus 84 sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~ 133 (142)
T PF04048_consen 84 SQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELR 133 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666777788888888888888888777555555554
No 18
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=96.73 E-value=0.075 Score=63.74 Aligned_cols=270 Identities=11% Similarity=0.180 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcCCCCC----CCCCCC--------HHHHHHHHHHHHHHHHHh--cCChHHHHHHHHH
Q 003157 450 AIEIFQTAFLTLCLTRLSDLVNSVFPMSS----RGSVPS--------KEQISRILSRIQEEIEAV--HMDGRLTLLVLRE 515 (843)
Q Consensus 450 sl~~fe~ayLsrs~~Rl~~~v~~~Fp~~~----r~~~Ps--------~~el~~i~r~i~~EL~~a--~~d~~L~~~v~~~ 515 (843)
....++.-|+++...+|.+-.+.++-.-. ++..|. ..--..+.+.|.+-++++ .........+...
T Consensus 200 ~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~ 279 (566)
T PF06046_consen 200 KLEELEDDYLSRIQKKMKEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEE 279 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 46788999999988888887766542100 001222 122234666677788888 4566666677777
Q ss_pred HHHHHHHHHHHHHhhcccCCCccc-c--CCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHH----HhhhhhH
Q 003157 516 IGKVLILVAERAEYQISTGPEARQ-I--PGPATSAQIKNFALCQHLQEIYTRMSSMITGL----PPIAA----EVLSPSL 584 (843)
Q Consensus 516 v~k~l~l~~~k~e~~l~~~~~a~q-v--~~~~t~~Q~~N~~L~n~l~~~~~~l~~~l~~~----p~~~~----~~l~~sl 584 (843)
+++.++.|-......+...-..+. . -..+.--...=|+++|....|...+.++...+ .+... ..+....
T Consensus 280 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 359 (566)
T PF06046_consen 280 LANFLKSYQDAWQEFKEEHFKDRSSVKPKENPPGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELM 359 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHH
Confidence 777777777776665432110000 0 00112333445889999999988777665532 22222 3467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccc
Q 003157 585 GTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAG 664 (843)
Q Consensus 585 ~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~ 664 (843)
+.+..++..+..-|+..+...+++.+..+....|-.. ..|..++..+...-.+|-..+.+
T Consensus 360 ~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~~-----------~~~~~I~~Ti~dY~~d~~~~l~~--------- 419 (566)
T PF06046_consen 360 DGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWYSG-----------EAVDTICATIEDYLQDFQHYLRP--------- 419 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGCTS------------HHHHHHHHHHHHHHHHCCCS-H---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCcCc-----------chHHHHHHHHHHHHHHHHHhccc---------
Confidence 8888889999999999999999999998888778731 57888888887666665544543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc------ccCChhHHHHHHHHHHHHHHHHcccCCCccccchhHHHHHhhhhhc-
Q 003157 665 TETICTRLVRSMASRVLIFFIRHASLV------RPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLI- 737 (843)
Q Consensus 665 ~~~~~~~~~~~la~r~i~~Fl~hasLl------RPL~e~GklrLa~D~a~LE~aLs~~l~~~~~lG~~y~~LRafR~LL- 737 (843)
.+...++..+..+++..|++..--= +.-.+.+..+|..|...|..-++.+. +...+-.....|..+.+++
T Consensus 420 --~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~-~~~~~~~~~~~l~~l~~ll~ 496 (566)
T PF06046_consen 420 --PYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG-SKSEVKSSFDVLEDLLELLR 496 (566)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH-
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccchHHHHHHHHHHHh
Confidence 3566667777888888888765552 23467788999999999999887766 3344556778999999999
Q ss_pred cCCch
Q 003157 738 FLETS 742 (843)
Q Consensus 738 f~~~~ 742 (843)
..+++
T Consensus 497 ~~d~~ 501 (566)
T PF06046_consen 497 LEDPE 501 (566)
T ss_dssp HS-CC
T ss_pred cCCHH
Confidence 44443
No 19
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.46 E-value=0.41 Score=53.69 Aligned_cols=174 Identities=13% Similarity=0.162 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
+..+.|...+.+++.+|++....||..+++.+.........+..+...++.|..++..+......--....+....-+..
T Consensus 14 ~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~ 93 (338)
T PF04124_consen 14 SEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKA 93 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999888888888888888888888888888777655444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003157 164 HRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAM 243 (843)
Q Consensus 164 ~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~ 243 (843)
..+.+.--++.-++-+=.-++.++..+. +-+|=.+..=++.|.... ..+++|+....-+........+..-
T Consensus 94 ~~~l~~~~~l~diLElP~Lm~~ci~~g~-------y~eALel~~~~~~L~~~~--~~~~lv~~i~~ev~~~~~~ml~~Li 164 (338)
T PF04124_consen 94 SLLLENHDRLLDILELPQLMDTCIRNGN-------YSEALELSAHVRRLQSRF--PNIPLVKSIAQEVEAALQQMLSQLI 164 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccc-------HhhHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334455555553321 222222233333333221 2256666555544443333333333
Q ss_pred HHHHhhhcccchhhhhhHHHHhhhhcchH
Q 003157 244 KVLEGGMEGLNQAQVGTGLQVFYNLGELK 272 (843)
Q Consensus 244 ~~L~~gl~~~n~~~v~saLqv~~nLg~L~ 272 (843)
..|... -++.+|+++...|..++
T Consensus 165 ~~L~~~------l~l~~~ik~v~~Lrrl~ 187 (338)
T PF04124_consen 165 NQLRTP------LKLPACIKTVGYLRRLP 187 (338)
T ss_pred HHHcCc------ccHHHHHHHHHHHHHhc
Confidence 333222 45889999999988664
No 20
>PF15469 Sec5: Exocyst complex component Sec5
Probab=96.42 E-value=0.31 Score=49.56 Aligned_cols=163 Identities=15% Similarity=0.217 Sum_probs=124.0
Q ss_pred HHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 003157 98 NQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRS------AVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQ 171 (843)
Q Consensus 98 ~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~------~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR 171 (843)
.++..+|.+|++..+..-..+......+...+. .++.|..+++.+......-+.-+-.......++..|..+|+
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 468899999999999999999988888865554 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003157 172 HTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGME 251 (843)
Q Consensus 172 ~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~ 251 (843)
+.-.++.|-.+|+..+..+ |+-.+..-+.-...++++.. ..+.+++..+.-|++.-..++....+.|.+.-
T Consensus 82 r~~flF~LP~~L~~~i~~~-------dy~~~i~dY~kak~l~~~~~-~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~- 152 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKG-------DYDQAINDYKKAKSLFEKYK-QQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP- 152 (182)
T ss_pred HHHHHHHhHHHHHHHHHcC-------cHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 9999999999999988653 35555555555555543310 05667777777777777777777777776642
Q ss_pred ccchhhhhhHHHHhhhhcc
Q 003157 252 GLNQAQVGTGLQVFYNLGE 270 (843)
Q Consensus 252 ~~n~~~v~saLqv~~nLg~ 270 (843)
.+.......+..+..|+.
T Consensus 153 -~s~~~~~~~i~~Ll~L~~ 170 (182)
T PF15469_consen 153 -SSQEEFLKLIRKLLELNV 170 (182)
T ss_pred -CCHHHHHHHHHHHHhCCC
Confidence 334445555555555554
No 21
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=3.8 Score=50.04 Aligned_cols=171 Identities=16% Similarity=0.179 Sum_probs=110.8
Q ss_pred ccCCCCCHHHHHHhHhcCCChhhhHHHHHHHHHHHHHHH-------HHHHhhCHHHHHHHhhhhhHHHHHHHHH-----H
Q 003157 62 FLSPSFSSTSFSSAALSSGSPASTAERLHHAIRLLENQL-------RSEVLSRHTDLLNQLSSLNHAEHALSTV-----R 129 (843)
Q Consensus 62 FL~~dFd~~~fan~lL~~~~i~~~l~kL~~~i~eld~~I-------~~~V~~n~~~LL~q~~~i~~le~~l~~i-----~ 129 (843)
|-++.|+|.=|..+.=. .+..+.|..+|..+.+.. ...|.+|...++.+-+.+..+++.++.. .
T Consensus 166 l~se~Fspkw~L~enH~----~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~g 241 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQ----DTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHG 241 (934)
T ss_pred cccccCChhHHHHhhhh----hccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccc
Confidence 67889999988776643 344555666666555444 3568889999999988888888877652 2
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHH
Q 003157 130 SAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEI 209 (843)
Q Consensus 130 ~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL 209 (843)
+.+..|...+++..++..--|+.+-.+..+.+..+.+..+|.|--....|....+.-++.|+-.--.+|+-||=.+.--
T Consensus 242 s~t~~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~- 320 (934)
T KOG2347|consen 242 SGTTKLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK- 320 (934)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc-
Confidence 3455677788888888888888888888888888877788877777777777777666655421223555554332211
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 210 VTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVL 246 (843)
Q Consensus 210 ~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L 246 (843)
..+.+.+++..-|...=..++....+.|
T Consensus 321 ---------t~v~~Fkk~l~Eve~~m~~~k~~l~~kl 348 (934)
T KOG2347|consen 321 ---------TEVNLFKKVLEEVEKRMQSFKETLYRKL 348 (934)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555555544444444444444444
No 22
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=95.92 E-value=0.52 Score=50.05 Aligned_cols=135 Identities=16% Similarity=0.236 Sum_probs=89.9
Q ss_pred CcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHH
Q 003157 572 LPPIAAEVLSPSLGTIYGVACDSVTSLFQAMID---GLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSE 648 (843)
Q Consensus 572 ~p~~~~~~l~~sl~~~~~~~~~~v~pL~~s~~~---~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~ 648 (843)
+|+.-...+..=.....+++.+...|++..+.. .++.++.+|.+..|.-.. .....|+|+..|.+.+..+...
T Consensus 32 Lp~~~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~vKWdvke----v~~qhs~YVd~l~~~~~~f~~r 107 (234)
T PF10474_consen 32 LPPNKRDFLEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANVKWDVKE----VMSQHSSYVDQLVQEFQQFSER 107 (234)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcCCCCCC----CCCccCHHHHHHHHHHHHHHHH
Confidence 555544444444444445556666777777766 457788899999997643 2457899999999988888654
Q ss_pred hhcccC-CCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHcccC
Q 003157 649 FLSRLL-PSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNL 717 (843)
Q Consensus 649 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs~~l 717 (843)
|..+. .. .-|.+....++.. ++..+.+.||.=-|-++=-+..||..|.-|+++|...|..+.
T Consensus 108 -L~~i~~~~--~i~~~~~~~lw~~----~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~ 170 (234)
T PF10474_consen 108 -LDEISKQG--PIPPEVQNVLWDR----LIFFAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLS 170 (234)
T ss_pred -HHHHHhcC--CCCHHHHHHHHHH----HHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHc
Confidence 31111 11 0011222244444 555555778888888999999999999999999999885443
No 23
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=11 Score=43.13 Aligned_cols=347 Identities=14% Similarity=0.119 Sum_probs=158.7
Q ss_pred hhhcccCCCCCHHHHHHhHhcCCCh--------------hhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHH
Q 003157 58 ILSAFLSPSFSSTSFSSAALSSGSP--------------ASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEH 123 (843)
Q Consensus 58 ~~~~FL~~dFd~~~fan~lL~~~~i--------------~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~ 123 (843)
|..+|-+..|||..+.|.-.+.-+. -+--.||+-.|+++...++++-..-....=.-+..
T Consensus 2 Dlg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd------ 75 (828)
T KOG4182|consen 2 DLGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKD------ 75 (828)
T ss_pred CCccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhH------
Confidence 5678999999999999988876431 11236888888888888765433211111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCch
Q 003157 124 ALSTVRSAVSSLQSSVRRVRSELSDP-------YKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEK 196 (843)
Q Consensus 124 ~l~~i~~~i~~L~~s~~RLr~~I~eP-------y~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~ 196 (843)
...++....+|+.++.-|+.++..- -..+....+.-.|+..+.+-|..+.-.-.|..-|+.-+..
T Consensus 76 -~~~Lq~Da~~Lq~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~------- 147 (828)
T KOG4182|consen 76 -SAALQADAHRLQEKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFAR------- 147 (828)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-------
Confidence 2344444555555555554444433 3334444444455566666666666655555555544432
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHH
Q 003157 197 LDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVE 276 (843)
Q Consensus 197 ~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~ 276 (843)
.|+-++|..+..+..-+... ..+.-..+.+.-++.-+.++...+.--|.+.+...+..+-..--|+|--.|.++..
T Consensus 148 gDL~~aadkLaalqkcL~A~--~elaefAe~qkQlE~~edRLEAlaqPrltda~a~~ktd~AQd~r~I~irIgRfkqL-- 223 (828)
T KOG4182|consen 148 GDLKGAADKLAALQKCLHAQ--EELAEFAERQKQLEDFEDRLEALAQPRLTDAFAEGKTDQAQDFRQIFIRIGRFKQL-- 223 (828)
T ss_pred CCchhHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHcCchHHHHHHccChHHHHHHHHHHHHHhhhHHH--
Confidence 34555555555554433110 00000111111222333333333333333333333333333334555555554432
Q ss_pred HHHHHHHHHHHHHHHH---hhc----hhhhhcCCCCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 277 HLVNKYKNMGVKSVNV---ALD----MKAISGGGAGFGPGGIRGSGTPQIGGGVKAREGLWQRMGTCMDQLHSAVVAVWH 349 (843)
Q Consensus 277 ~lv~~~~~~~~k~i~~---ald----~~~Ls~~~~~~~~~~~r~~~~p~~~~~~~~~~~lw~~le~~~d~i~~~~~~v~~ 349 (843)
--.|...-.+-++. -|| .+.|....+...+=.++.--..+ .+.++| -+-+--..|++-..|.+-|.
T Consensus 224 --elqY~~Vq~k~ikQlWedfd~kQ~anklanersesqrlssgdEfQst-ssq~qf----aq~LT~fYDeLL~~~eqe~K 296 (828)
T KOG4182|consen 224 --ELQYRAVQKKFIKQLWEDFDEKQGANKLANERSESQRLSSGDEFQST-SSQPQF----AQFLTLFYDELLEHCEQEVK 296 (828)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhccccccccccc-ccChHH----HHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222 222 12222000000000000000000 111122 12233345888899999998
Q ss_pred HHHHHhhCCCCCcc-hhhHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhcCchhhhHhhhchhhHHHHHHHHHHHHhh
Q 003157 350 LQRVLSKKRDPFTH-VLLLDEVIQEGDPMLTDRVWEGLVKAFANQMKSAFTASSFVKEIFTSGYPKLLSMIENLLERISR 428 (843)
Q Consensus 350 Le~vL~kkrdp~t~-~~fL~~l~~~~~~sl~~~FW~~la~~~~~~~~~a~~~s~~v~q~L~~~yPkllrl~~~l~~rl~~ 428 (843)
.+-++-... ..+. -.++-|++...++ .|-..+...++....+.-.--.|++..+++..||=+.+|.--++-+-.
T Consensus 297 WCm~aF~dd-ym~l~~kliaE~lgaLga----sf~a~i~la~gda~~e~eaLAk~a~dl~Sgdlpkgini~tkHLeaLiE 371 (828)
T KOG4182|consen 297 WCMNAFGDD-YMPLPFKLIAELLGALGA----SFDAHILLALGDANEELEALAKFAKDLHSGDLPKGINIFTKHLEALIE 371 (828)
T ss_pred HHHHhcCCc-cccccHHHHHHHHhhhch----hHHHHHHHHhccccHHHHHHHHHHHHhccCcCccchhHHHHHHHHHHH
Confidence 888764321 1111 1234455544333 344444444443333332223467777788888877777654444443
Q ss_pred hhcccc
Q 003157 429 ETDVKG 434 (843)
Q Consensus 429 ~~~~~g 434 (843)
..++.|
T Consensus 372 lh~iTg 377 (828)
T KOG4182|consen 372 LHHITG 377 (828)
T ss_pred Hhhcch
Confidence 334444
No 24
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=91.81 E-value=18 Score=42.96 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=111.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 003157 116 SSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPE 195 (843)
Q Consensus 116 ~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~ 195 (843)
..++..+.+|+.|...+...+...+.+.++|..-.++-.....+|++-..+.+.|...+.=+.+.-.|=..+-.+. .+
T Consensus 21 ~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~--v~ 98 (508)
T PF04129_consen 21 NQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEGP--VN 98 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcCC--CC
Confidence 3445666666777777777777777777777777777777888888888777777776665554444433332222 12
Q ss_pred hHHHHH-HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----------hhhHHHH
Q 003157 196 KLDLTK-AAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLNQAQ----------VGTGLQV 264 (843)
Q Consensus 196 ~~dl~k-aA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n~~~----------v~saLqv 264 (843)
.++.+ ....+..+.....+....+.+.+++..+.++..+.+...+..+-|..-+..+.... +...--.
T Consensus 99 -e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~~LLk~~~~~ 177 (508)
T PF04129_consen 99 -EQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQVLLKYKELF 177 (508)
T ss_pred -HHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhhHHHH
Confidence 23444 45666677776666778888888888888888888888888877765444332211 1111111
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 265 FYNLGELKVTVEHLVNKYKNMGVKSVNVALD 295 (843)
Q Consensus 265 ~~nLg~L~~~v~~lv~~~~~~~~k~i~~ald 295 (843)
.|-..--|+....+-+.|++++.+.+...|.
T Consensus 178 ~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~ 208 (508)
T PF04129_consen 178 QFLKKHSPELAKELRQAYVETMSWYYSSYFK 208 (508)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222455566666788888887777776
No 25
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=46 Score=41.25 Aligned_cols=158 Identities=15% Similarity=0.213 Sum_probs=130.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
.....++|..+-++.+..|++.|..|+.++-.....-.+.-..+..-+++|.++..+.+--+..+.-.-+.+++.-..=.
T Consensus 48 re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~ 127 (982)
T KOG3691|consen 48 RETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENS 127 (982)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 34567889999999999999999999999988888777777778888999999999999888888777777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003157 162 NLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNE 241 (843)
Q Consensus 162 rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~ 241 (843)
.-...+++|-..-...++-.|++.++.. +.+..|+.++.+--.++.++ |.+|+.+.+...-++..+..+...
T Consensus 128 q~K~Vi~vL~eieEl~qvPqkie~~i~k-------eqY~~Asdll~~~~~~lng~-L~~VEgLs~l~~ele~~~~~L~~~ 199 (982)
T KOG3691|consen 128 QYKKVIEVLKEIEELRQVPQKIETLIAK-------EQYLQASDLLTRAWELLNGP-LDGVEGLSDLRSELEGLLSHLEDI 199 (982)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCc-chhhhhhhHHHHHHHHHHHHHHHH
Confidence 5557788888888888888888888742 67999999999999999888 999999999988888877777776
Q ss_pred HHHHHH
Q 003157 242 AMKVLE 247 (843)
Q Consensus 242 a~~~L~ 247 (843)
..+.|.
T Consensus 200 L~eELv 205 (982)
T KOG3691|consen 200 LIEELV 205 (982)
T ss_pred HHHHHH
Confidence 666663
No 26
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=88.81 E-value=66 Score=39.29 Aligned_cols=339 Identities=14% Similarity=0.189 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhcCCCcchHHHHHHHHHHH--HHHHHHHHhcCc----
Q 003157 329 LWQRMGTCMDQLHSAVVAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEGLVKAF--ANQMKSAFTASS---- 402 (843)
Q Consensus 329 lw~~le~~~d~i~~~~~~v~~Le~vL~kkrdp~t~~~fL~~l~~~~~~sl~~~FW~~la~~~--~~~~~~a~~~s~---- 402 (843)
+....+.+.++....-.+-..|...+.+ .+=+..-...+..+...+.+.|...+.+.- ....+......+
T Consensus 78 ll~~~~~L~~~~~~~~~k~~ll~~f~~~----f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag 153 (618)
T PF06419_consen 78 LLEEASELREQKEELELKKKLLDAFLER----FTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAG 153 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 4445555554443333333333333332 233333344455555578889998887542 234443332221
Q ss_pred -----hhhhHhhhchhhHHHHHHHHHHHHhhhhcccccCCCCCcchhHHHHHHHHHHHH--HHHHhhhhhhhh-------
Q 003157 403 -----FVKEIFTSGYPKLLSMIENLLERISRETDVKGVLPAISPEGKGQMIAAIEIFQT--AFLTLCLTRLSD------- 468 (843)
Q Consensus 403 -----~v~q~L~~~yPkllrl~~~l~~rl~~~~~~~g~~~~~~~e~~~~l~~sl~~fe~--ayLsrs~~Rl~~------- 468 (843)
-..+.+..+|.||.+-.+.-++.+.... ++....|.+++.-++. .|+..|+.+...
T Consensus 154 ~~iM~~~~~~~e~a~erl~~w~q~e~~~l~~~~----------~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~ 223 (618)
T PF06419_consen 154 LEIMEQMSKYLERAYERLYRWVQRECRSLNLDN----------PEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALL 223 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC----------cccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 2456788889999888877666663221 2213345556655543 555555543322
Q ss_pred -hhhhcCCCCCCCCCC-----------C---HHHHHHHHHHHHHHHHHhc----CC-------------------hHHHH
Q 003157 469 -LVNSVFPMSSRGSVP-----------S---KEQISRILSRIQEEIEAVH----MD-------------------GRLTL 510 (843)
Q Consensus 469 -~v~~~Fp~~~r~~~P-----------s---~~el~~i~r~i~~EL~~a~----~d-------------------~~L~~ 510 (843)
.-..++..|+.+..| - .+=+..+-+.|.+|-|... .| +.+..
T Consensus 224 ~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (618)
T PF06419_consen 224 RRFLDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINE 303 (618)
T ss_pred HHHHHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 111222211110011 1 2334455667888877761 11 33334
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhHHHHHHH
Q 003157 511 LVLREIGKVLILVAERAEYQISTGPEARQIPGPATSAQIKNFALCQHLQEIYTRMSSMITGLPPIAAEVLSPSLGTIYGV 590 (843)
Q Consensus 511 ~v~~~v~k~l~l~~~k~e~~l~~~~~a~qv~~~~t~~Q~~N~~L~n~l~~~~~~l~~~l~~~p~~~~~~l~~sl~~~~~~ 590 (843)
.+-+++....+-+-.|+|+.+...++.. .++.|+|.|...+..+.+++..-. .|.. .+..+
T Consensus 304 lld~i~~~l~rplk~RvEQvi~se~~~i-----------~~yki~~LL~fY~~~~~k~i~~~s-----~L~~---tl~~L 364 (618)
T PF06419_consen 304 LLDRILEGLCRPLKIRVEQVISSEEDPI-----------TLYKIANLLSFYQMTFSKLIGEDS-----SLIE---TLKEL 364 (618)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCcc-----------HHHHHHHHHHHHHHHHHHHcCCCc-----hHHH---HHHHH
Confidence 4455555666666779999998865432 478899999999999999864321 1222 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchh--h
Q 003157 591 ACDSVTSLFQAMIDGLESCILQ-IHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTE--T 667 (843)
Q Consensus 591 ~~~~v~pL~~s~~~~ie~il~~-MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 667 (843)
...+-.-++..+.+.+..+..+ +. ....|-.|..++.|....+..+.+.|=+.+.+.+ ..+ .
T Consensus 365 ~~~a~~~f~~~l~~~~~~l~~~~~~---------~~~~DL~PP~~l~d~l~~L~~il~~~~~s~~~~~------~~~~~~ 429 (618)
T PF06419_consen 365 QDLAQKKFFSSLRDHVAKLLRSAPE---------PPPADLSPPEWLIDFLSLLREILDVYDSSLSPDD------DRENDN 429 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCcc------chhhhh
Confidence 4555666777777777777765 11 1124557778887777777777776666665331 122 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHccc
Q 003157 668 ICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQN 716 (843)
Q Consensus 668 ~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs~~ 716 (843)
+...++.....-++..-...|.-+.|-.+ ...-+.+=+..+.-.|+++
T Consensus 430 ~~~~Il~~~idpll~~c~~~a~~L~~~~~-~~if~iNCl~~i~s~L~~~ 477 (618)
T PF06419_consen 430 DFKPILDEPIDPLLQMCQKSASPLAPKDD-RAIFMINCLDLIQSTLSPF 477 (618)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhccCChhh-hHHHHHHhHHHHHHHccCh
Confidence 44444444433333333333333333333 2444555555555566554
No 27
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.54 E-value=68 Score=37.96 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCChHHHHH-HHHHHHHHHHHHHHHHHhh-------cccCCCccccCCCCCHHHHHHHH
Q 003157 483 PSKEQISRILSRIQEEIEAV-HMDGRLTLL-VLREIGKVLILVAERAEYQ-------ISTGPEARQIPGPATSAQIKNFA 553 (843)
Q Consensus 483 Ps~~el~~i~r~i~~EL~~a-~~d~~L~~~-v~~~v~k~l~l~~~k~e~~-------l~~~~~a~qv~~~~t~~Q~~N~~ 553 (843)
.++..+..++..|.+=.+.. ..+..+ . +.+.-...++.|-.++.+. .+.+. ...-.++-.+=|.
T Consensus 177 ~~A~~~~~Ll~~it~ry~~L~~~~~rl--~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~-----~~~~~~~l~~l~~ 249 (494)
T PF04437_consen 177 KSAERFVKLLESITDRYRPLPSLSHRL--RFLIDIQLPLLDDYHDRLSQSLEAFESSTSTLA-----SLSGDSGLERLCK 249 (494)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHH---GG----GHHHHHHHHHHTHHHHHHHHHHHHHT----S-----CEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh-----hccCCchHHHHHH
Confidence 35677667777766555544 233333 1 1123334444444444443 22210 0112455557789
Q ss_pred HHHHHHHHHHHHHHhhcC---C-----------c---HHHH-------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 554 LCQHLQEIYTRMSSMITG---L-----------P---PIAA-------EVLSPSLGTIYGVACDSVTSLFQAMIDGLESC 609 (843)
Q Consensus 554 L~n~l~~~~~~l~~~l~~---~-----------p---~~~~-------~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~i 609 (843)
++|++.|+...+..--+. + + +... .++...+.....+..++..-+.+.+...+..-
T Consensus 250 ~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~ 329 (494)
T PF04437_consen 250 ILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKAS 329 (494)
T ss_dssp HHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888755332 1 0 0111 14566666677777777777777777777776
Q ss_pred HHHhcc-ccCcccccC-ccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 003157 610 ILQIHD-QNFSVLGMD-AAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRH 687 (843)
Q Consensus 610 l~~MH~-e~~~~~~~~-~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~h 687 (843)
+...-+ ..|...+.. ......+|+-+.+....+...-. ++.+.-+ ......+.+.+|..+-..|..+
T Consensus 330 lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~-~L~~~L~----------~~~f~~i~r~ia~~l~~~l~~~ 398 (494)
T PF04437_consen 330 LKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLS-FLERSLP----------PADFRRIWRRIASKLDDYLWES 398 (494)
T ss_dssp THHHHT--GGGT-------------GGGHHHHHHHHHHHH-HHHTS------------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHH-HHHHHcC----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 654444 667654321 12244677776554444443333 2333222 2344555666777777888888
Q ss_pred hhccccCChhHHHHHHHHHHHHHHHHcccCCCccccchhHHHHHhhhhhccCCc
Q 003157 688 ASLVRPLSESGKLRMARDMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLET 741 (843)
Q Consensus 688 asLlRPL~e~GklrLa~D~a~LE~aLs~~l~~~~~lG~~y~~LRafR~LLf~~~ 741 (843)
+....-.+++|..|+..||..|-..+++++.+. ...++.|+.-=.||=++.
T Consensus 399 Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p---~~~f~~l~E~~~LL~L~~ 449 (494)
T PF04437_consen 399 ILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRP---EAFFKRLREACKLLNLPY 449 (494)
T ss_dssp TTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG----HHHHHHHHHHHHHGGGG
T ss_pred hhhcCeeChhHHHHHHHHHHHHHHHHHhhccCH---HHHHHHHHHHHHHcCCCC
Confidence 999999999999999999988877777655432 233444444444554443
No 28
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.77 E-value=94 Score=38.81 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRT 166 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t 166 (843)
+||+.=++-||-+|-++|....++...-.+...+++..+..--+.+..|...+.++-....+--.+|......-+++-+.
T Consensus 246 ekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL 325 (951)
T KOG2115|consen 246 EKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKL 325 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999998888888887777765566677788888888777777777777766666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 167 TELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVL 246 (843)
Q Consensus 167 ~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L 246 (843)
.+-||....+..-...++..+.. .|+++|=.++.-+..++++..|.||.-++.+...+...-+.|-..+.+.+
T Consensus 326 ~~kL~~i~~V~~~q~~vq~ll~~-------~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF 398 (951)
T KOG2115|consen 326 LQKLRLIATVHQAQSTVQLLLST-------QDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREF 398 (951)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhc-------ccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666655566666666543 67999999999999999999999999888888877776666655554444
No 29
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=85.41 E-value=99 Score=37.79 Aligned_cols=418 Identities=17% Similarity=0.220 Sum_probs=209.1
Q ss_pred HHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 96 LENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIR 175 (843)
Q Consensus 96 ld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~r 175 (843)
|...|++.+...+...|+.+..+. +.++.|...++.|+...+.+.+++..-...........++|+.-.+.+..=-+
T Consensus 21 LR~~iE~~~l~~~~~~L~~f~~v~---~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 21 LRSDIEKRLLKINQEFLKEFSPVN---RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666677777766544 24556777777777777777777776666666666666666555554443333
Q ss_pred HHHHHHHHHHhh----------ccccC--CC-chHHHHHHHHHHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003157 176 ALRLSKKLRDLI----------APAEA--EP-EKLDLTKAAQLHCEIVTMCK-EYDLSGIDVINEELLWVKEVGEKLRNE 241 (843)
Q Consensus 176 fl~L~kRL~~~~----------~~~~~--~~-~~~dl~kaA~~l~EL~~Ll~-~~~L~~I~vV~~~~~~v~~~r~~v~~~ 241 (843)
++....... ..+.. .. =..-+.|+-+++..-..|+. +..-.|+++.+..-..++.+=++|-+.
T Consensus 98 ---ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w 174 (618)
T PF06419_consen 98 ---LLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRW 174 (618)
T ss_pred ---HHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 11100 00 12346777788888888885 455688999999999999999999988
Q ss_pred HHHHHHhhhccc--chhhhhhHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCCCCCCCCCCCCCCCc
Q 003157 242 AMKVLEGGMEGL--NQAQVGTGLQVFYNLGELKVTVEHLVNKYKNMGVKSVNVALDMKAISGGGAGFGPGGIRGSGTPQI 319 (843)
Q Consensus 242 a~~~L~~gl~~~--n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~~~~k~i~~ald~~~Ls~~~~~~~~~~~r~~~~p~~ 319 (843)
+...+...-... ....+-.|+.++-+= |..-+.+++++.+.=.+.+.+.|- .+|+..+ +||.. ..|-.
T Consensus 175 ~q~e~~~l~~~~~~~~~~l~~al~~L~~r---p~lf~~~l~~~~~~R~~~l~~~F~-~aLt~g~----~~~~~--~rPIe 244 (618)
T PF06419_consen 175 VQRECRSLNLDNPEVSPLLRRALRYLRER---PVLFNYCLDEFAEARSKALLRRFL-DALTRGG----PGGSP--SRPIE 244 (618)
T ss_pred HHHHHhhhhhcCcccchHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC----CCCCC--CCchh
Confidence 877776651111 124456666666552 555566666665554444444442 1222111 12111 12322
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcch---hhH-----HHHHhcCCCcchHHHHHHHHHHH
Q 003157 320 GGGVKAREGLWQRMGTCMDQLHSAV-VAVWHLQRVLSKKRDPFTHV---LLL-----DEVIQEGDPMLTDRVWEGLVKAF 390 (843)
Q Consensus 320 ~~~~~~~~~lw~~le~~~d~i~~~~-~~v~~Le~vL~kkrdp~t~~---~fL-----~~l~~~~~~sl~~~FW~~la~~~ 390 (843)
...+ .--..+..++.-++... ..--.|+.+.....+..... .+- ...+ ..+...--..+|+-|
T Consensus 245 l~Ah----DP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~----~~lld~i~~~l~rpl 316 (618)
T PF06419_consen 245 LHAH----DPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELI----NELLDRILEGLCRPL 316 (618)
T ss_pred hhcc----ChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHH----HHHHHHHHHHHhHHH
Confidence 2211 11334555544333322 22233444444332211000 000 0000 012222234556666
Q ss_pred HHHHHHHHhcC-chhhhHhhhchhhHHHHHHHHHHHHhhhhcccccCCCCCcchhHHHHHHHHHHHH----HHHHhhhhh
Q 003157 391 ANQMKSAFTAS-SFVKEIFTSGYPKLLSMIENLLERISRETDVKGVLPAISPEGKGQMIAAIEIFQT----AFLTLCLTR 465 (843)
Q Consensus 391 ~~~~~~a~~~s-~~v~q~L~~~yPkllrl~~~l~~rl~~~~~~~g~~~~~~~e~~~~l~~sl~~fe~----ayLsrs~~R 465 (843)
+.+++.++... +++- .+ .-=.|+++|...+.|+-.. +..|.+++..+++ .|.+--..+
T Consensus 317 k~RvEQvi~se~~~i~-~y--ki~~LL~fY~~~~~k~i~~--------------~s~L~~tl~~L~~~a~~~f~~~l~~~ 379 (618)
T PF06419_consen 317 KIRVEQVISSEEDPIT-LY--KIANLLSFYQMTFSKLIGE--------------DSSLIETLKELQDLAQKKFFSSLRDH 379 (618)
T ss_pred HHHHHHHHHcCCCccH-HH--HHHHHHHHHHHHHHHHcCC--------------CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555442 2221 00 1336788888888777211 1234444444432 222222233
Q ss_pred hhhhhhh-cCCCCCCCCCCCHHHHHHHHHHHHHHHHH---hcC---ChHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 003157 466 LSDLVNS-VFPMSSRGSVPSKEQISRILSRIQEEIEA---VHM---DGRLTLLVLREIGKVLILVAERAEYQISTGPEAR 538 (843)
Q Consensus 466 l~~~v~~-~Fp~~~r~~~Ps~~el~~i~r~i~~EL~~---a~~---d~~L~~~v~~~v~k~l~l~~~k~e~~l~~~~~a~ 538 (843)
+...... .-+++..-.|| +-+..++..+.+=++. ... +..=...+..++...++-|...|+.+...-+..
T Consensus 380 ~~~l~~~~~~~~~~DL~PP--~~l~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~- 456 (618)
T PF06419_consen 380 VAKLLRSAPEPPPADLSPP--EWLIDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPK- 456 (618)
T ss_pred HHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCCh-
Confidence 3333333 22222211233 4444455555555555 211 111114566777777777777777765432211
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003157 539 QIPGPATSAQIKNFALCQHLQEIYTRMS 566 (843)
Q Consensus 539 qv~~~~t~~Q~~N~~L~n~l~~~~~~l~ 566 (843)
.. ..+-.+||++.++..+.
T Consensus 457 ------~~---~~if~iNCl~~i~s~L~ 475 (618)
T PF06419_consen 457 ------DD---RAIFMINCLDLIQSTLS 475 (618)
T ss_pred ------hh---hHHHHHHhHHHHHHHcc
Confidence 11 45667899998887776
No 30
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=85.21 E-value=98 Score=37.56 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=121.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
|...-+++...|+.=..++++.|-++|-|||+.+..|..+.+.-..+-..|.+.+..+.+++..-..|--....+....+
T Consensus 22 Ir~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e 101 (863)
T KOG2033|consen 22 IREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGE 101 (863)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhh
Confidence 44445789999999999999999999999999999999999988999999999999999999665555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhc--------cCCCCchHHHHHHHHHHHH
Q 003157 162 NLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCK--------EYDLSGIDVINEELLWVKE 233 (843)
Q Consensus 162 rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~--------~~~L~~I~vV~~~~~~v~~ 233 (843)
++..+.-- +-..+.+=..+=+.+.+ .....++..+.-.+.+-+ ..=++...+....+..++.
T Consensus 102 ~~Yg~aaq---VKyLv~~PE~IWg~lD~-------s~fl~At~ly~~~~Hlq~~liqLdsss~ll~nfP~l~~Qw~a~r~ 171 (863)
T KOG2033|consen 102 HLYGTAAQ---VKYLVSSPELIWGHLDS-------SEFLDATVLYCMVEHLQKQLIQLDSSSMLLKNFPALTNQWVATRP 171 (863)
T ss_pred HHHHHHHH---HHHHHhCHHHhhccccc-------cchHHHHHHHHHHHHHHHHHhhcCCCcHHHhhcHHHHHHHHHHhh
Confidence 55533210 00000011111111111 234444444433333221 1235566788888888888
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHHH
Q 003157 234 VGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYKN 284 (843)
Q Consensus 234 ~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~ 284 (843)
-+.+|..+....|.. ..+..-.+..||+..-.|+..+ ...+++.|.+
T Consensus 172 F~stI~q~s~~~Lld--~glsd~atvdaL~aiaLLdesd--psqvLelFL~ 218 (863)
T KOG2033|consen 172 FHSTIEQQSCSTLLD--IGLSDWATVDALAAIALLDESD--PSQVLELFLE 218 (863)
T ss_pred HHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHhccCC--HHHHHHHHHH
Confidence 889998888777754 2344445667777777776532 2344555533
No 31
>PRK11637 AmiB activator; Provisional
Probab=80.37 E-value=79 Score=36.66 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 003157 83 ASTAERLHHAIRLLENQLR 101 (843)
Q Consensus 83 ~~~l~kL~~~i~eld~~I~ 101 (843)
.+.++.+...|+++.++|.
T Consensus 46 ~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 32
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=78.02 E-value=2e+02 Score=36.35 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQ 114 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q 114 (843)
++.+..=+..+..||+..+..||..+.++
T Consensus 182 ~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~ 210 (806)
T PF05478_consen 182 LDDLRTFLNDTPQQIDHLLVQNYSELKDH 210 (806)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554443
No 33
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=76.60 E-value=2.1e+02 Score=35.91 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHH
Q 003157 588 YGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSE 648 (843)
Q Consensus 588 ~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~ 648 (843)
...+.+.+..+|.-...+++-|+.==|...+-+.- ..-+..-..|+..+...+..++..
T Consensus 389 v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll--~Ald~~~~~y~~~~~~~l~~lr~~ 447 (766)
T PF10191_consen 389 VRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLL--KALDSIFSQYLSSLTATLRSLRKS 447 (766)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888887744432221110 001223345555555555555553
No 34
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=74.82 E-value=33 Score=38.49 Aligned_cols=107 Identities=12% Similarity=0.164 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.+....+...++++.++.++...++++.+-.-.....+++..++.+...+..|....++..+....-.++-......++
T Consensus 19 L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~ 98 (338)
T PF04124_consen 19 LSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLLLE 98 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888888888777766666677777777778888888888777777776666666666666666
Q ss_pred HHHHHHHHH------H---------HHHHHHHHHHHHHHhhc
Q 003157 162 NLHRTTELL------Q---------HTIRALRLSKKLRDLIA 188 (843)
Q Consensus 162 rL~~t~~LL------R---------~~~rfl~L~kRL~~~~~ 188 (843)
+.....++| . .+.-+...++||...+.
T Consensus 99 ~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~ 140 (338)
T PF04124_consen 99 NHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFP 140 (338)
T ss_pred HHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc
Confidence 666665554 2 23334455666666553
No 35
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=74.39 E-value=86 Score=39.59 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=57.4
Q ss_pred hhhcccCCCCCHHHHHHhHhcCCChhhhHHHHHHHHHHHHHHHHHH----HhhCHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003157 58 ILSAFLSPSFSSTSFSSAALSSGSPASTAERLHHAIRLLENQLRSE----VLSRHTDLLNQLSSLNHAEHALSTVRSAVS 133 (843)
Q Consensus 58 ~~~~FL~~dFd~~~fan~lL~~~~i~~~l~kL~~~i~eld~~I~~~----V~~n~~~LL~q~~~i~~le~~l~~i~~~i~ 133 (843)
|...|+.+--+.. +.++ ..+..+..+++..+++.++..|-.- +..+..+.| ..+.++...+..++..+.
T Consensus 184 Dl~~~l~~~~~qi---~~l~-~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~~~~~~L---~~i~~l~~~~~~~~~~L~ 256 (806)
T PF05478_consen 184 DLRTFLNDTPQQI---DHLL-VQNYSELKDHVSSDLDNIGSLLGGDIQDQLGSNVYPAL---DSILDLAQAMQETKELLQ 256 (806)
T ss_pred HHHHHHHhhHHHH---HHHH-HHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5556664433333 2222 1223344556666666655544433 333333333 334444446667777777
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 003157 134 SLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRT 166 (843)
Q Consensus 134 ~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t 166 (843)
.++.+.++|+....+-...+....+.|......
T Consensus 257 ~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 257 NVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777776666
No 36
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.86 E-value=1.4e+02 Score=32.36 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----CHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLS----RHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~----n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.++....+.+..+|...+.. .+.........+...+.-+..++..++.++..++..|.++.+--+.++.....|+
T Consensus 29 l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 29 LQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666544441 2333333344444555555555555555555555555555555555555555554
No 37
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=72.31 E-value=21 Score=29.25 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 003157 116 SSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHR 165 (843)
Q Consensus 116 ~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~ 165 (843)
.+++.+...+++++..++.|..-++-+|.+|..-.+++.....+|.++-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 36778888889999999999999999999999888888888888877644
No 38
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.83 E-value=57 Score=36.22 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 118 LNHAEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 118 i~~le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
.++++...+.++..+..|++.++-|++++.|
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444455555555555555555555544
No 39
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=64.73 E-value=5.2 Score=30.66 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.5
Q ss_pred HHHHHHHhhcCChHhHHHHHHH
Q 003157 781 PLQYSLWLDSQGEDQIWKGIKA 802 (843)
Q Consensus 781 ~~~y~~Wld~h~e~e~l~~i~~ 802 (843)
..-|.-|||+|++.+|=+||+.
T Consensus 19 RLvYADWL~e~gdp~raefIr~ 40 (42)
T TIGR02996 19 RLVYADWLDEHGDPARAEFIRL 40 (42)
T ss_pred HHHHHHHHHHcCCHHHHhHHHh
Confidence 4569999999998888888874
No 40
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=63.86 E-value=1.4e+02 Score=32.40 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 85 TAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 85 ~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
++..++..|.+++-+|+..-.++-..=+.+...+.+--..|+.+..+++.+-..=++|+.++..||- +.....=...|
T Consensus 55 QIt~iQaeI~q~nlEielLkleKeTADltH~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~--qe~LPVEA~yH 132 (277)
T PF15003_consen 55 QITNIQAEIDQLNLEIELLKLEKETADLTHPDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYC--QENLPVEAQYH 132 (277)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcchHhhhCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh--hcCccchhhhh
Confidence 4555666666666666644444333333444445544445788889999999999999999999993 22222222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 165 -RTTELLQHTIRALRLSKKLRDLIA 188 (843)
Q Consensus 165 -~t~~LLR~~~rfl~L~kRL~~~~~ 188 (843)
.+.+||..+..|+ .+|+..++
T Consensus 133 r~vVeLL~laa~fi---~~Le~~Le 154 (277)
T PF15003_consen 133 RYVVELLELAASFI---EKLEEHLE 154 (277)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHH
Confidence 5677888877764 66666654
No 41
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.64 E-value=65 Score=39.55 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 118 LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLR 184 (843)
Q Consensus 118 i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~ 184 (843)
++.++..++.++..+..++..++++..++..-.+.++...+++++++....-.....+.+..+.++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAK 489 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555544444444444444443
No 42
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.85 E-value=72 Score=30.63 Aligned_cols=37 Identities=5% Similarity=0.259 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 003157 126 STVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSN 162 (843)
Q Consensus 126 ~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~r 162 (843)
+.++..+..++..+++++.+|..=+..++.+-..+.+
T Consensus 85 ~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 85 KQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 43
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=58.18 E-value=60 Score=31.41 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCCCHHHHHHhHhcCC-Chh-------hhHHHHHHHHHHHHHHHHHHHhh------CHHHHHHHhhhhhHHHHHHHHHHH
Q 003157 65 PSFSSTSFSSAALSSG-SPA-------STAERLHHAIRLLENQLRSEVLS------RHTDLLNQLSSLNHAEHALSTVRS 130 (843)
Q Consensus 65 ~dFd~~~fan~lL~~~-~i~-------~~l~kL~~~i~eld~~I~~~V~~------n~~~LL~q~~~i~~le~~l~~i~~ 130 (843)
+.+|+..|.+-...-. ++. ..-..|...|.++|..+.+.... +|...-+++.+++++...++.++.
T Consensus 22 eklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~ 101 (131)
T PF10158_consen 22 EKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQS 101 (131)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477776666433222 222 33345666666666666544432 455555666667777777777777
Q ss_pred HHHHHHHHHHHHH
Q 003157 131 AVSSLQSSVRRVR 143 (843)
Q Consensus 131 ~i~~L~~s~~RLr 143 (843)
.++.+-.++++|-
T Consensus 102 lL~~~v~~ie~LN 114 (131)
T PF10158_consen 102 LLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777774
No 44
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=57.63 E-value=1.8e+02 Score=33.24 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchH
Q 003157 124 ALSTVRSAVSSLQSSVRRVRSEL------SDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKL 197 (843)
Q Consensus 124 ~l~~i~~~i~~L~~s~~RLr~~I------~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~ 197 (843)
.|+.|...+..|..-+++|.++= .+.-.+|..+-..|.++...+..|=.++--|+-.+.|+ .
T Consensus 262 ~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH------------~ 329 (388)
T PF04912_consen 262 KLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLH------------E 329 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH------------H
Confidence 35666666666666666655432 23345666666667777777777666444444444444 4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 003157 198 DLTKAAQLHCEIVTMCK 214 (843)
Q Consensus 198 dl~kaA~~l~EL~~Ll~ 214 (843)
+....++.+.+|+....
T Consensus 330 ~a~~~~~~l~~le~~q~ 346 (388)
T PF04912_consen 330 EAAEFSQTLSELESQQS 346 (388)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777777777653
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.92 E-value=3.5e+02 Score=32.21 Aligned_cols=137 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.+.++.|...+.+++..+ ..+...-..+-.+...+.+++..+...+..+..+.....+|+.+|..--+........|+
T Consensus 304 l~d~i~~l~~~l~~l~~~i-~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAI-DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003157 162 NLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNE 241 (843)
Q Consensus 162 rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~ 241 (843)
++..-.+-++.-.. ++.+.......+..++.+..+.+- +++.+.+.+...-..+...
T Consensus 383 ~l~~~l~~~~~~~~----------------------~~~ke~~~~~~i~~~~~~~g~~~~-i~~~~l~~~n~~~~~~L~~ 439 (562)
T PHA02562 383 KLQDELDKIVKTKS----------------------ELVKEKYHRGIVTDLLKDSGIKAS-IIKKYIPYFNKQINHYLQI 439 (562)
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 003157 242 A 242 (843)
Q Consensus 242 a 242 (843)
.
T Consensus 440 l 440 (562)
T PHA02562 440 M 440 (562)
T ss_pred h
No 46
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.91 E-value=1.2e+02 Score=32.36 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSEL----SDPYKSIKSKTIQ 159 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I----~ePy~~i~~~t~~ 159 (843)
+.+...+.+-.|++++|..+ +.+++.-...+....+.|....+|+|.+. .+-|..+..+...
T Consensus 34 eEl~EFQegSrE~Eaelesq--------------L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Ledd 99 (333)
T KOG1853|consen 34 EELNEFQEGSREIEAELESQ--------------LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDD 99 (333)
T ss_pred HHHHHHhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888732 23333333444555566666666666655 4557777778888
Q ss_pred HHHHHHHHHHHHHHHH
Q 003157 160 LSNLHRTTELLQHTIR 175 (843)
Q Consensus 160 L~rL~~t~~LLR~~~r 175 (843)
|..+|+.|+-||.-+|
T Consensus 100 lsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 100 LSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999998887444
No 47
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=55.94 E-value=2.5e+02 Score=28.94 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 85 TAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 85 ~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
-++++..+...+..-+...+..++++.-..+..+..+|+.-+.++..+ ...|.+....|+++-. ...-+..++
T Consensus 16 ~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~i~~lE~~aD~i~~~i------~~~L~~~fitP~dRed-i~~L~~~lD 88 (214)
T PF01865_consen 16 HFEEVAEASVLLAELLEAYLEGDYEDVEELLEEIKELEHEADEIKREI------REELYKSFITPFDRED-ILRLISSLD 88 (214)
T ss_dssp HHHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-SS-SS-HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhccCCCcHHH-HHHHHHHHH
Confidence 345666666667777766666566666666666666666665555433 3456667788888743 555677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCch----HHHHHHHHHHHHHHHhhccCCCCchH--HHHHHHHHHHHHHHHH
Q 003157 165 RTTELLQHTIRALRLSKKLRDLIAPAEAEPEK----LDLTKAAQLHCEIVTMCKEYDLSGID--VINEELLWVKEVGEKL 238 (843)
Q Consensus 165 ~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~----~dl~kaA~~l~EL~~Ll~~~~L~~I~--vV~~~~~~v~~~r~~v 238 (843)
.+.+.+..+..-+.+.+ ... ..... +.. ..+.+++..+.+.-..+.+..-.+.. -.-..+..++.--..+
T Consensus 89 ~I~d~i~~~a~~l~~~~-~~~-~~~~~--~~~~~l~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~I~~~E~~~D~l 164 (214)
T PF01865_consen 89 DIADYIEDAAKRLSLYK-VEI-PEELR--EEFQELAEIVVEAIEELVEAIEELKSILESSFEEKELIKEINKLEEEADKL 164 (214)
T ss_dssp HHHHHHHHHHHHHHHHT------CCGH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCS-HCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-cCC-Ccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 88888888887666544 210 01110 001 12233333333332222221123333 1222334455555666
Q ss_pred HHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHH
Q 003157 239 RNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVT 274 (843)
Q Consensus 239 ~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~ 274 (843)
..++...|..--+..|+..+-.--.++..++...+.
T Consensus 165 ~~~~~~~lf~~~~~~d~~~~~~~~ei~~~le~~~D~ 200 (214)
T PF01865_consen 165 YRRLIKKLFSNEDEMDPIEIIKLKEIYEHLEDIADK 200 (214)
T ss_dssp HHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666532334554444444455555443333
No 48
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.54 E-value=4.7e+02 Score=31.68 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccch---hhhhhHHHHhhhhcchHH
Q 003157 199 LTKAAQLHCEIVTMCKE-YDLSGIDVINEELLWVKEVGEKLRNEAMK-VLEGGMEGLNQ---AQVGTGLQVFYNLGELKV 273 (843)
Q Consensus 199 l~kaA~~l~EL~~Ll~~-~~L~~I~vV~~~~~~v~~~r~~v~~~a~~-~L~~gl~~~n~---~~v~saLqv~~nLg~L~~ 273 (843)
+-|+=.++.+-+-|++. .-..|+++++......+.+=+++=+-... .++.--.+.++ .-+..|+.. |..=|.
T Consensus 163 L~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r~~qs~e~~~l~~t~~~E~~~il~kA~~~---L~~~p~ 239 (655)
T KOG3758|consen 163 LDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFRWSQSSECRNLTGTDSQEVSPILRKAFVF---LSSRPV 239 (655)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCccccchhhHHHHHHHHHH---HhcChH
Confidence 34455566666777754 34688899988888888887777774433 33221111111 123333332 233345
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003157 274 TVEHLVNKYKNMGVKSVNVAL 294 (843)
Q Consensus 274 ~v~~lv~~~~~~~~k~i~~al 294 (843)
..+-+++++.+.=.+.+.+.|
T Consensus 240 lfk~~ide~~~aR~~~L~~~F 260 (655)
T KOG3758|consen 240 LFKYLIDEVGTARSQSLLRQF 260 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666555455555444
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.30 E-value=1.8e+02 Score=30.31 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=48.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 003157 81 SPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQL 160 (843)
Q Consensus 81 ~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L 160 (843)
+....+.+|+..++++..++.+.-.+ .. ....+++..++.-+..+..|+...++|+.++..--++++....++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~-~~------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT-WN------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888653322 11 223345555555666666677777777766666555555555555
Q ss_pred HHHHH
Q 003157 161 SNLHR 165 (843)
Q Consensus 161 ~rL~~ 165 (843)
..++.
T Consensus 163 ~~~~~ 167 (206)
T PRK10884 163 DDKQR 167 (206)
T ss_pred HHHHH
Confidence 55554
No 50
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=52.49 E-value=3.7e+02 Score=29.96 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHHH
Q 003157 232 KEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYKN 284 (843)
Q Consensus 232 ~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~ 284 (843)
.++++.+.....+.+.+..+..|..++.-..+.|--||.=...++....-++.
T Consensus 2 ~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~ 54 (324)
T smart00762 2 DEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICD 54 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHH
Confidence 56788888889999999999999999999999999999644444433333333
No 51
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.55 E-value=2.7e+02 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 003157 122 EHALSTVRSAVSSLQSSVRRVRSELSDPY 150 (843)
Q Consensus 122 e~~l~~i~~~i~~L~~s~~RLr~~I~ePy 150 (843)
+...+..+..++.+...++.+.+++.+-.
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666655
No 52
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.96 E-value=2.1e+02 Score=29.51 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=38.5
Q ss_pred CChhhhhcCChhhhccc-CCCCCH-----------------HHHHHhH--hcCCChhh-------------hHHHHHHHH
Q 003157 47 SSPLDVFANDPILSAFL-SPSFSS-----------------TSFSSAA--LSSGSPAS-------------TAERLHHAI 93 (843)
Q Consensus 47 ~~~~~~~~~d~~~~~FL-~~dFd~-----------------~~fan~l--L~~~~i~~-------------~l~kL~~~i 93 (843)
...|..+++++.|..-- .|.|.| ..|++-+ ++...+++ .+++..|++
T Consensus 9 s~~W~~~E~mevfk~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV 88 (190)
T PF05266_consen 9 SPVWKTIESMEVFKKVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNV 88 (190)
T ss_pred cchhHHHHHHHHHHcCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCcc
Confidence 34678888888887776 889999 5566633 22222332 246677777
Q ss_pred HHHHHHHHHHHh
Q 003157 94 RLLENQLRSEVL 105 (843)
Q Consensus 94 ~eld~~I~~~V~ 105 (843)
..+..+|.+++.
T Consensus 89 ~~l~~RL~kLL~ 100 (190)
T PF05266_consen 89 KFLRSRLNKLLS 100 (190)
T ss_pred HHHHHHHHHHHH
Confidence 888888876544
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.78 E-value=5.2e+02 Score=31.07 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSE---VLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~---V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.||...++++.+.+.+. +....+++-.+...+.+++..+..++..+..|.....+|+.++..-|..+.....+|.
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356667777777666655 3335566666777788888888889999999999999999988888888877776554
No 54
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=49.40 E-value=4.8e+02 Score=30.29 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=7.2
Q ss_pred CCHHHHHHhHhcC
Q 003157 67 FSSTSFSSAALSS 79 (843)
Q Consensus 67 Fd~~~fan~lL~~ 79 (843)
||-...+..+..+
T Consensus 211 Fn~e~v~~ai~~~ 223 (438)
T PRK00286 211 FNDEAVARAIAAS 223 (438)
T ss_pred cCcHHHHHHHHcC
Confidence 5555555555543
No 55
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=49.29 E-value=1.2e+02 Score=26.90 Aligned_cols=32 Identities=3% Similarity=0.234 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhh
Q 003157 85 TAERLHHAIRLLENQLRSEVLSRHTDLLNQLSS 117 (843)
Q Consensus 85 ~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~ 117 (843)
++.++...++++++.+ +.+..+.+++..++.+
T Consensus 20 ~l~~l~~~l~~~~~ti-~~l~~~~~~i~~e~~~ 51 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTI-DTLQEQVDPITKEIND 51 (90)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 3455555555555555 2333333444444333
No 56
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.58 E-value=1.2e+02 Score=28.18 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 120 HAEHALSTV--RSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 120 ~le~~l~~i--~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
.+|..++.+ +..++.|+..+.+++.++..--.+++....+++.|
T Consensus 53 ~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 53 ALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444 44455555555555554444444444444444433
No 57
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=48.50 E-value=5e+02 Score=30.25 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=7.3
Q ss_pred CCHHHHHHhHhcC
Q 003157 67 FSSTSFSSAALSS 79 (843)
Q Consensus 67 Fd~~~fan~lL~~ 79 (843)
||-...+..+..+
T Consensus 206 Fn~e~~~rai~~~ 218 (432)
T TIGR00237 206 FNDEKVARAIFLS 218 (432)
T ss_pred cCcHHHHHHHHcC
Confidence 5666666555443
No 58
>PHA03332 membrane glycoprotein; Provisional
Probab=48.31 E-value=3.2e+02 Score=35.02 Aligned_cols=88 Identities=10% Similarity=0.127 Sum_probs=51.4
Q ss_pred ChhhhcccCCCCCHHHHHHhHhcCCChh--hh-----HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHH
Q 003157 56 DPILSAFLSPSFSSTSFSSAALSSGSPA--ST-----AERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTV 128 (843)
Q Consensus 56 d~~~~~FL~~dFd~~~fan~lL~~~~i~--~~-----l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i 128 (843)
+-|...|-.+.|-+..|...++....+. +. --.|+...+.++-- ..+-+.|++.+..++++.+.++..
T Consensus 829 v~dlw~~t~~~~rprRF~G~viag~AIGvATAAqiTA~vAL~~A~QAL~va-----~~~~~~llqnaaaia~mksaIg~t 903 (1328)
T PHA03332 829 VLDLWHETVKMFAPRRFGGSVMAGDAIGLSAAAFTMASAALNAATQALAVA-----TLYVNQLLQATAATAEMASKIGGL 903 (1328)
T ss_pred hhhhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788889888887665311 11 11233333322222 224455777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 003157 129 RSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 129 ~~~i~~L~~s~~RLr~~I~e 148 (843)
+.+|+.+..++.++-..|.-
T Consensus 904 NaAV~~lsDai~klGnti~k 923 (1328)
T PHA03332 904 NARVDKTSDVITKLGDTIAK 923 (1328)
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 66666666666666555543
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.88 E-value=3.7e+02 Score=28.64 Aligned_cols=102 Identities=11% Similarity=0.162 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHH
Q 003157 119 NHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLD 198 (843)
Q Consensus 119 ~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~d 198 (843)
..+...+..++..++.|..-.+++.+.|..--+++..+..+++.+..+..-+.-.+. .++.+|+..+...- +..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~--~m~~~L~~~v~~d~---Pf~- 125 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME--QMIDELEQFVELDL---PFL- 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC---CCC-
Confidence 355555666777777777777777777777777778888888888877766665443 57778887665432 111
Q ss_pred HHHHHHHHHHHHHhhccCCCCchHHHHH
Q 003157 199 LTKAAQLHCEIVTMCKEYDLSGIDVINE 226 (843)
Q Consensus 199 l~kaA~~l~EL~~Ll~~~~L~~I~vV~~ 226 (843)
.-+.-.-+..|+.++.+.++..-+-++.
T Consensus 126 ~~eR~~Rl~~L~~~l~~~dv~~~ek~r~ 153 (251)
T PF11932_consen 126 LEERQERLARLRAMLDDADVSLAEKFRR 153 (251)
T ss_pred hHHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence 2223344588888888877765443333
No 60
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.37 E-value=6e+02 Score=30.54 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=57.2
Q ss_pred hhhhcccCCCCCHHHHHHhHhcCC-----ChhhhHHHHHHHHHHHHHHHHHHHhh-CHHHHHHH-----hhhhhHHHHHH
Q 003157 57 PILSAFLSPSFSSTSFSSAALSSG-----SPASTAERLHHAIRLLENQLRSEVLS-RHTDLLNQ-----LSSLNHAEHAL 125 (843)
Q Consensus 57 ~~~~~FL~~dFd~~~fan~lL~~~-----~i~~~l~kL~~~i~eld~~I~~~V~~-n~~~LL~q-----~~~i~~le~~l 125 (843)
.+|.-|+..+=|...+-.++.+.- .+...++.|..--.++...|...=.. +....|.- -.+++.++..+
T Consensus 203 ~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~ 282 (581)
T KOG0995|consen 203 RSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYV 282 (581)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHH
Confidence 467777765555443333333221 13334444444444444444311111 22223321 12345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 003157 126 STVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTEL 169 (843)
Q Consensus 126 ~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~L 169 (843)
..+.+.-..+...+++++++|.+-.+.++.....-..|+.-.++
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666777777777776666666666666555544443
No 61
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.05 E-value=4.1e+02 Score=28.56 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 003157 84 STAERLHHAIRLLENQLRSEVLS 106 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~ 106 (843)
..+.+|++.++.+..+++..+..
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~ 39 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSK 39 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999998865554
No 62
>PRK09039 hypothetical protein; Validated
Probab=45.64 E-value=4.9e+02 Score=29.34 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLN-QLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQL 160 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~-q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L 160 (843)
+++.+..+...+.+++.+|.. -.++|. .-....+++..+..++..+..++..-.+++......++.......++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~-----L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~ 118 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE-----LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRA 118 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHH
Confidence 556677888888888888764 233333 23345578888888888888777777777776555544333333444
Q ss_pred HHH
Q 003157 161 SNL 163 (843)
Q Consensus 161 ~rL 163 (843)
..+
T Consensus 119 ~~l 121 (343)
T PRK09039 119 GEL 121 (343)
T ss_pred HHH
Confidence 443
No 63
>PF14923 CCDC142: Coiled-coil protein 142
Probab=44.70 E-value=4.8e+02 Score=30.60 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhcccc-CChhHHHHHHHHHH
Q 003157 629 NNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRP-LSESGKLRMARDMA 707 (843)
Q Consensus 629 ~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRP-L~e~GklrLa~D~a 707 (843)
..+|.|+....+.|--=.-+=..++.+.+ --.....++.. +++..+.|+-.=|. .|..|.+||..||.
T Consensus 272 ~~pS~Yv~~~v~~vl~PVl~g~q~L~~~a-------q~~~l~~~l~a----~~eAWLdhIl~~kIKFS~~GAlQL~~DF~ 340 (450)
T PF14923_consen 272 SAPSEYVEYVVETVLEPVLQGVQGLPPEA-------QIPALSQALTA----MLEAWLDHILMHKIKFSLQGALQLRQDFG 340 (450)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHHH----HHHHHHHHHHHccceeeHHHHHHHHHHHH
Confidence 37899998876655333333344554331 11223333444 44778888765432 89999999999999
Q ss_pred HHHHHHcccCCCcc-ccc------hhHHHHHhhhhhccCCchhh
Q 003157 708 ELELAVGQNLFPVE-QLG------APYRALRAFRPLIFLETSQL 744 (843)
Q Consensus 708 ~LE~aLs~~l~~~~-~lG------~~y~~LRafR~LLf~~~~~i 744 (843)
.+..-|..=+..++ ++- ..+|++-.-=.+|.+-|.+-
T Consensus 341 ~Vr~wl~~e~~~Ls~e~rq~Ll~l~v~r~~dgv~~lLlqqP~~~ 384 (450)
T PF14923_consen 341 YVRDWLESECSGLSPELRQTLLSLEVFRRCDGVGLLLLQQPGPK 384 (450)
T ss_pred HHHHHHHhhhccCCHHHHHHHhccHHHHHHHHHHHHHhcCCCCc
Confidence 99998876444433 122 23444444445666655443
No 64
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=43.75 E-value=4.8e+02 Score=28.73 Aligned_cols=17 Identities=18% Similarity=0.698 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 003157 481 SVPSKEQISRILSRIQE 497 (843)
Q Consensus 481 ~~Ps~~el~~i~r~i~~ 497 (843)
++|+..||+.+.+.|.+
T Consensus 267 ~lPTr~evd~l~k~l~e 283 (293)
T PF09712_consen 267 NLPTRSEVDELYKRLHE 283 (293)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999999764
No 65
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.54 E-value=6.6e+02 Score=29.69 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=17.2
Q ss_pred hhcCChhhhcccCCCC-----CHHHHHH
Q 003157 52 VFANDPILSAFLSPSF-----SSTSFSS 74 (843)
Q Consensus 52 ~~~~d~~~~~FL~~dF-----d~~~fan 74 (843)
.|.+|++|..||+.++ |+..+.+
T Consensus 213 ~l~~~~~~~~FL~~~~~~~~~~~~~~~~ 240 (503)
T KOG2273|consen 213 VLSNDEDFRLFLESDSKELPTDVNSRFK 240 (503)
T ss_pred ccccCHHHHHHhcccccccchhhHHHHh
Confidence 4678899999999994 5555444
No 66
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.36 E-value=2.5e+02 Score=24.91 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhh-HHHHHHHHHHHH----HHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLN-HAEHALSTVRSA----VSSLQSSVRRVRSELSDPYKSIKSKTIQL 160 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~-~le~~l~~i~~~----i~~L~~s~~RLr~~I~ePy~~i~~~t~~L 160 (843)
+.-+.-.++.++.++ ..+..+-..|+.+..... .++..-+.-... +..-..-+.++|+++..=++.++....++
T Consensus 9 ~~~l~P~l~~~~~~l-~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQL-QELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 003157 161 SNLHR 165 (843)
Q Consensus 161 ~rL~~ 165 (843)
.+|++
T Consensus 88 ~~L~q 92 (92)
T PF14712_consen 88 DKLQQ 92 (92)
T ss_pred HhhcC
No 67
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=40.79 E-value=4.6e+02 Score=27.61 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
..+.+...++..+-..+......+|+++=..+..+.++|..-+.++..+. ..|.+...-|.++-. .-.-++.+
T Consensus 17 ~h~~~v~~~v~~~~~~f~~~~~g~~~~~e~~~~~I~~lE~~aD~ik~~i~------~~l~~~~flP~~R~D-il~L~~~~ 89 (217)
T COG1392 17 RHLEKVAETVKLLAPAFEALRRGDYEDAEELLKEIKDLEHEADEIKREIR------LELYKGFFLPFDRED-ILELIESQ 89 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhhHHHHHHH------HHHHhcccCCCCHHH-HHHHHHHH
Confidence 44567777777777777777777777777777777777776666654443 234555667776644 66677788
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCC--CCchHHHHHHHHHHHHHHH
Q 003157 164 HRTTELLQHTIRALRLSK-----KLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYD--LSGIDVINEELLWVKEVGE 236 (843)
Q Consensus 164 ~~t~~LLR~~~rfl~L~k-----RL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~--L~~I~vV~~~~~~v~~~r~ 236 (843)
+.+.+....+...+.+-+ -++..+.... ....+++..+.+.-..+.+.- ...+.-+-..+..++.-..
T Consensus 90 D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~-----~~~~~a~~~~~~ai~~L~~~~e~~~~~~~i~~eI~~~E~e~D 164 (217)
T COG1392 90 DDIADAAEDAAKLLLLRKPFIPEELDEEFLRLV-----DLSLKAAELLAEAIELLEDLLESADRLLEIIKEIEALEHECD 164 (217)
T ss_pred HHHHHHHHHHHHHHHccccCCCcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 888999999988888877 5555554432 344555555555444443211 1122233333444555555
Q ss_pred HHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHH
Q 003157 237 KLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLV 279 (843)
Q Consensus 237 ~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv 279 (843)
.+..+..+.|.+.-...|+-.+---.++.-.++.+.+..+.+-
T Consensus 165 ~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~IaD~~edva 207 (217)
T COG1392 165 DIQRELLKKLFSLETEINPIDVIILKEIIEKIEDIADRAEDVA 207 (217)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665333445555555555555555444443333
No 68
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.71 E-value=1.1e+02 Score=32.87 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=20.4
Q ss_pred CHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 107 RHTDLLNQLSSLN---HAEHALSTVRSAVSSLQSSVRRVRSEL 146 (843)
Q Consensus 107 n~~~LL~q~~~i~---~le~~l~~i~~~i~~L~~s~~RLr~~I 146 (843)
++.+||+++..++ ++|+.|..++..|++++...+.|..+|
T Consensus 150 rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 150 RLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555544444 345555555555555555555555443
No 69
>PRK15396 murein lipoprotein; Provisional
Probab=38.82 E-value=1.2e+02 Score=26.58 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 117 SLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 117 ~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
+++.+...++.++..++++..-++-+|..+..-++++..-..+|.|+-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777777777777777777777764
No 70
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=38.31 E-value=5.3e+02 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=27.4
Q ss_pred hhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 105 LSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRS 144 (843)
Q Consensus 105 ~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~ 144 (843)
.....-.++|+..++.-++.|=.-.+.|..|...+..++.
T Consensus 88 ~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~ 127 (254)
T KOG2196|consen 88 EEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKL 127 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 3344456788888888888886666667777666655543
No 71
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=38.20 E-value=2.1e+02 Score=25.25 Aligned_cols=59 Identities=10% Similarity=0.267 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSEL 146 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I 146 (843)
+.+.+++..++++...+ ..|.+.+++.-..++.++..-+.++..-........+++.+.
T Consensus 3 dkl~~i~~~v~~v~~im----~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIM----RENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566666666665554 567788888888888888888888888888888888887665
No 72
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.11 E-value=2.5e+02 Score=29.84 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--CHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HH
Q 003157 86 AERLHHAIRLLENQLRSEVLS--RHTDLLNQLSS-LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQ-LS 161 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~--n~~~LL~q~~~-i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~-L~ 161 (843)
++.-...|+++.+++..+..+ .|.+-|.|+.. |+.+|.++...+..-......+.|+..++..--+.|...... ++
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.92 E-value=6.3e+02 Score=28.12 Aligned_cols=36 Identities=8% Similarity=0.256 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 126 STVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 126 ~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
..++..+..+...++..|.++.+--.+++.....++
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333333
No 74
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.54 E-value=9.6e+02 Score=30.10 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRT 166 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t 166 (843)
.+=+...-+.++..+.-|..+-++++..-+.|..++.....+....+.||..+.+++...-+-.-.+++.+..|..+-++
T Consensus 77 e~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e 156 (1265)
T KOG0976|consen 77 EQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE 156 (1265)
T ss_pred hhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344455677778888888999999999999999999999999999999999999999999999999999998888766
Q ss_pred HHHHHH
Q 003157 167 TELLQH 172 (843)
Q Consensus 167 ~~LLR~ 172 (843)
..-=++
T Consensus 157 LsAk~~ 162 (1265)
T KOG0976|consen 157 LSAKAH 162 (1265)
T ss_pred HhhhhH
Confidence 554443
No 75
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.69 E-value=4.1e+02 Score=25.58 Aligned_cols=28 Identities=4% Similarity=0.271 Sum_probs=11.0
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 003157 140 RRVRSELSDPYKSIKSKTIQLSNLHRTT 167 (843)
Q Consensus 140 ~RLr~~I~ePy~~i~~~t~~L~rL~~t~ 167 (843)
+.++++|.+-.+.+......++.+|.+.
T Consensus 85 ~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 85 KQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444333
No 76
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.35 E-value=1.4e+02 Score=26.70 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 117 SLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 117 ~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
+++++...++.++..++++..-++-++..+..-++++..-..+|.|++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 566788888889999999999999999999999999999999999886
No 77
>PRK11637 AmiB activator; Provisional
Probab=35.13 E-value=7.6e+02 Score=28.53 Aligned_cols=15 Identities=0% Similarity=0.211 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003157 87 ERLHHAIRLLENQLR 101 (843)
Q Consensus 87 ~kL~~~i~eld~~I~ 101 (843)
..+...++++.++|.
T Consensus 43 ~~~~~~l~~l~~qi~ 57 (428)
T PRK11637 43 SDNRDQLKSIQQDIA 57 (428)
T ss_pred hhhHHHHHHHHHHHH
Confidence 345555666666654
No 78
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=35.03 E-value=3.4e+02 Score=30.88 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRS 102 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~ 102 (843)
+....|...++.|..++.+
T Consensus 274 ~~q~~Leesye~Lke~~kr 292 (455)
T KOG3850|consen 274 ETQALLEESYERLKEQIKR 292 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555443
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.92 E-value=6e+02 Score=27.27 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLN-----QLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTI 158 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~-----q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~ 158 (843)
..+.++...+..+..+- +.+..+-+++|. .......+...+...+..+..|...+++++.+|.+-=+.+.+...
T Consensus 20 ~~L~~~~~~l~~~~~~~-~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 20 NRLLELRSELQQLKEEN-EELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777666 456666667776 444555555555666666666666666666655555555555444
Q ss_pred HHHHHHHHH
Q 003157 159 QLSNLHRTT 167 (843)
Q Consensus 159 ~L~rL~~t~ 167 (843)
.++.-....
T Consensus 99 ~l~~~~~~l 107 (302)
T PF10186_consen 99 SLEQRRSRL 107 (302)
T ss_pred HHHHHHHHH
Confidence 444444433
No 80
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.47 E-value=4.3e+02 Score=25.40 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 120 HAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 120 ~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
+++..++-++..++.|..+++.+...+..-.+.++....++.++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666655555555555555555544
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.03 E-value=1.2e+02 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=32.7
Q ss_pred HhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 003157 104 VLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKS 155 (843)
Q Consensus 104 V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~ 155 (843)
+..+-.-+++-...+++++..+..++..|+.++-.+++++++=.+-|..+..
T Consensus 49 ~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 49 SNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666677777777777777777777776666666666554
No 82
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=33.88 E-value=7.6e+02 Score=28.18 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchH
Q 003157 118 LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKL 197 (843)
Q Consensus 118 i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~ 197 (843)
.+.+-..|..|+.....|..+|++|+..+..-|.-+..- -+=+|. =..||++|++... + -
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~et-LQEERy---------------R~erLEEqLNdlt-e---L 321 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAET-LQEERY---------------RYERLEEQLNDLT-E---L 321 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHHHHHHHHhHHH-H---H
Confidence 445555578888999999999999999888777654321 111221 1267777775432 0 1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003157 198 DLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNE 241 (843)
Q Consensus 198 dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~ 241 (843)
...+.+.+=.|+..+-+.+++.+-+--++.+..++.++..|.+.
T Consensus 322 qQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 322 QQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKL 365 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555567766666666666666777777777777766543
No 83
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=8.1e+02 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchHH
Q 003157 198 DLTKAAQLHCEIVTMCKEYDLSGIDV 223 (843)
Q Consensus 198 dl~kaA~~l~EL~~Ll~~~~L~~I~v 223 (843)
++...--...|++..+++++..++++
T Consensus 345 ev~et~d~~~EV~~~la~~~~~~~d~ 370 (439)
T KOG2911|consen 345 EVNETLDRQEEVEDALASYNVNNIDF 370 (439)
T ss_pred HHHHHHhhHHHHHHHHhcCCCCCCcc
Confidence 34445555666666666655554443
No 84
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=33.17 E-value=8.4e+02 Score=29.02 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.+.+.||.....+--++|...|.......-.....++.....+..|...++.....++.+...+.+--..++.....+.
T Consensus 397 VA~EVr~LA~~t~~st~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 476 (553)
T PRK15048 397 VAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVS 476 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHhhc
Q 003157 162 NLHRTTE--------LLQHTIRALRLSKKLRDLIA 188 (843)
Q Consensus 162 rL~~t~~--------LLR~~~rfl~L~kRL~~~~~ 188 (843)
.+....+ +-..+..+-..+.+|+..++
T Consensus 477 ~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~ 511 (553)
T PRK15048 477 EMDRVTQQNASLVQESAAAAAALEEQASRLTQAVS 511 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 85
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.07 E-value=1e+03 Score=29.07 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=40.6
Q ss_pred CHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 003157 107 RHTDLLNQL-SSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKT 157 (843)
Q Consensus 107 n~~~LL~q~-~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t 157 (843)
..-+||... ..+..|+..++.-...+..|...-+..|....+-|..++...
T Consensus 384 k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~ 435 (594)
T PF05667_consen 384 KTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKA 435 (594)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334455555 447888998899999999999999999999999999888543
No 86
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=1.1e+03 Score=29.43 Aligned_cols=270 Identities=13% Similarity=0.160 Sum_probs=154.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHH--HHHhhcccCCCccccCCCCCHHHHHHHHHHH
Q 003157 481 SVPSKEQISRILSRIQEEIEAVH--MDGRLTLLVLREIGKVLILVAE--RAEYQISTGPEARQIPGPATSAQIKNFALCQ 556 (843)
Q Consensus 481 ~~Ps~~el~~i~r~i~~EL~~a~--~d~~L~~~v~~~v~k~l~l~~~--k~e~~l~~~~~a~qv~~~~t~~Q~~N~~L~n 556 (843)
+.-+.+=.-.|++...+-++.|. .||....-..-.+.+.|-.|.. -++..+.++-..+........-+..=..++|
T Consensus 459 Tfis~dl~~~iLqe~kes~~Ra~~l~~~~dlp~~~l~i~~iLl~~L~~~hv~~ale~a~~~is~a~~~vep~l~Fl~~I~ 538 (763)
T KOG3745|consen 459 TFISEDLAIKILQETKESLARAKVLIDPQDLPLNILEIFKILLKFLGQEHVDYALETALAGISSADTRVEPNLYFLEVIN 538 (763)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCCCcchHHHHHHH
Confidence 34455555667777777777773 4455543333344444433322 2333444431111111111111222223333
Q ss_pred HHHHHHHHHHHhh--------cCCc---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCcccccC
Q 003157 557 HLQEIYTRMSSMI--------TGLP---PIAAEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHD-QNFSVLGMD 624 (843)
Q Consensus 557 ~l~~~~~~l~~~l--------~~~p---~~~~~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~-e~~~~~~~~ 624 (843)
-...+-.-+++-. ...| +++++.-......+..-+...+..-+..+.+.++.|+.+-.. .||.....+
T Consensus 539 ~~~~I~~l~s~~~~~~~iP~i~~t~d~~~~~i~~kk~~i~~iE~~v~~gL~~tIn~li~~~~~il~~~qkk~df~p~s~~ 618 (763)
T KOG3745|consen 539 KGDIILQLMSKFFKSELIPLISVTPDKLSEVIQKKKSFIQSIEEKVAFGLDRTINVLIGHVKFILSTEQKKTDFKPDSIN 618 (763)
T ss_pred HhhHHHHHHHHHHhcccCccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccC
Confidence 3222222222221 1222 233344555666666667777888888999999999985554 577753221
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHH
Q 003157 625 AAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMAR 704 (843)
Q Consensus 625 ~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~ 704 (843)
....-+.-|.+.+.++.......-.+..-+ -.+.....++.|.-..-+.|+.-.. .+-.|.+-|..
T Consensus 619 --s~~~~~~pa~~vVq~L~~~~~~l~~~~dg~-----------nLd~~~~eig~rlf~~l~~hl~~~~-~s~~Gal~lic 684 (763)
T KOG3745|consen 619 --SLTRDIEPAIRVVQFLGNHIEQLKGRLDGE-----------NLDVFLQEIGTRLFRLLLSHLQQFK-VSTAGALLLIC 684 (763)
T ss_pred --cchhhhHHHHHHHHHHHHHHHHHHcccCCc-----------hHHHHHHHHHHHHHHHHHHHHHHhe-eccccceeeec
Confidence 122233337787777776665544444322 2455567788888899999999888 88999999999
Q ss_pred HHHHHHHHHcccCCCccccchhHHHHHhhhhhccCCchhhc---cCCCCCCCChHHHHHHHHccC
Q 003157 705 DMAELELAVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLG---ASPLLQDLPPSVILHHLYSRG 766 (843)
Q Consensus 705 D~a~LE~aLs~~l~~~~~lG~~y~~LRafR~LLf~~~~~i~---~~~~~~~lp~~~vl~hL~sra 766 (843)
|+.+.--++..+ ++..+-.-|..|++.-.|+-..++.+. +....+++...+|=-++=.|.
T Consensus 685 Dvn~y~~~i~~~--~~~~vl~~F~tL~~L~nLliV~pd~l~ev~k~~~la~f~~~~I~efv~lR~ 747 (763)
T KOG3745|consen 685 DVNEYRTFIHSL--GQPSVLPYFKTLKALANLLIVKPDNLEEVGKGKFLANFDREEIHEFVQLRT 747 (763)
T ss_pred cHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHeeChhhHHHHhchhhhccccHHHHHHHHHHhh
Confidence 999999988632 234455567999999999988876544 444455566666544444444
No 87
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.35 E-value=8.3e+02 Score=30.06 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 96 LENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIR 175 (843)
Q Consensus 96 ld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~r 175 (843)
+-+++.+.+.+|..+||.. +.+|.-++.|...|.++-+++.--.-.+-..++.|++|
T Consensus 487 i~THl~evir~~a~eLl~r-----------qevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~L------------ 543 (696)
T COG1298 487 IATHLSEVIRNHAHELLGR-----------QEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNL------------ 543 (696)
T ss_pred HHHhHHHHHHHhHHHHhHH-----------HHHHHHHHHHHHHhHHHHHHhccCccCHHHHHHHHHHH------------
Confidence 4566777777777777653 46777788888888888888775233333333333322
Q ss_pred HHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003157 176 ALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGG 249 (843)
Q Consensus 176 fl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~g 249 (843)
|++. -+.||+.....++.|.....++.+ ..++.+|..+-++...++...
T Consensus 544 -------L~E~-------VsIRdl~tIlEtlad~a~~~kd~~-----------~L~e~VR~~L~r~I~~~~~~~ 592 (696)
T COG1298 544 -------LKER-------VSIRDLPTILETLADYAPITKDPD-----------ELTEKVRQALGRQITQQLLDE 592 (696)
T ss_pred -------HhcC-------CccccHHHHHHHHHHhcccCCCHH-----------HHHHHHHHHHHHHHHHHhhCc
Confidence 2222 245888888888888766554321 245566777777777766543
No 88
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=31.35 E-value=9.8e+02 Score=28.68 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=60.5
Q ss_pred HhhhchhhHHHHHHHHHHHHhhhhcccccCCCCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCCHH
Q 003157 407 IFTSGYPKLLSMIENLLERISRETDVKGVLPAISPEGKGQMIAAIEIFQTAFLTLCLTRLSDLVNSVFPMSSRGSVPSKE 486 (843)
Q Consensus 407 ~L~~~yPkllrl~~~l~~rl~~~~~~~g~~~~~~~e~~~~l~~sl~~fe~ayLsrs~~Rl~~~v~~~Fp~~~r~~~Ps~~ 486 (843)
+.-.-||.-..+|+||+.+|..+.- ....+.| +++.- |-.+-+.||+..++ | ..-..+
T Consensus 129 tYg~ly~qn~~~~~dlFtel~~y~~----~~~~nle------e~l~e----ff~~Lf~~~f~~l~---~-----~~~~~~ 186 (563)
T KOG3821|consen 129 TYGSLYPQNAELFNDLFTELKLYYV----GSNVNLE------ETLNE----FFARLFEVMFSQLN---P-----QYDFTL 186 (563)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhc----cccCCHH------HHHHH----HHHHHHHHHHHHhc---C-----CcCCcH
Confidence 4445577778999999999987541 1122232 12322 22344566666665 2 123467
Q ss_pred HHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHHHHHHHh
Q 003157 487 QISRILSRIQEEIEAVHMDGRLT-LLVLREIGKVLILVAERAEY 529 (843)
Q Consensus 487 el~~i~r~i~~EL~~a~~d~~L~-~~v~~~v~k~l~l~~~k~e~ 529 (843)
|...-++...+||.....=|+.+ .+|.+-+.-| +.|.+-.+.
T Consensus 187 Dy~eCl~~~~~~l~pFGdiPq~l~~Q~trsl~~a-r~Flq~L~~ 229 (563)
T KOG3821|consen 187 DYLECLSKARRELKPFGDIPQKLMLQVTRSLVAA-RTFLQGLEV 229 (563)
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHhHHHHHH-HHHHHHHHH
Confidence 88888888899999988777764 4455444443 455555444
No 89
>PRK03918 chromosome segregation protein; Provisional
Probab=31.15 E-value=7.4e+02 Score=31.38 Aligned_cols=101 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQL------SSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKS 155 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~------~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~ 155 (843)
+...+.++...+.++..+|... ..-+... ...+.++..++.++..+..+...++.++.++..-.+.++.
T Consensus 624 ~~~~l~~~~~~i~~l~~~i~~l-----~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 624 LEEELDKAFEELAETEKRLEEL-----RKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003157 156 KTIQLSNLHRTTELLQHTIRALRLSKKLRDLI 187 (843)
Q Consensus 156 ~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~ 187 (843)
....++++.....-+...-..+..++++...+
T Consensus 699 ~~~~~~~l~~~~~~~~~l~~~~~~l~~lr~~~ 730 (880)
T PRK03918 699 LKEELEEREKAKKELEKLEKALERVEELREKV 730 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 90
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.66 E-value=6.3e+02 Score=26.19 Aligned_cols=73 Identities=10% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQLSS-LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTI 158 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~-i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~ 158 (843)
+..+...+...+++....+...-++|-..+-. ...++..+..++..+..+...+++|+..+..-..++.....
T Consensus 60 ~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 60 LDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666677777777654443 55677777777777777777777776655544444444333
No 91
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=30.31 E-value=2.6e+02 Score=27.16 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCCCCccccchhhH--HHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHH
Q 003157 634 YMEELQKCILHFRSEFLSRLLPSSANTTTAGTETI--CTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELEL 711 (843)
Q Consensus 634 Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~ 711 (843)
-..|.++-.....++|.+++.+.. ...+.++| ...++.+|| --|.... -|||.|.=|-||..+|.+-|.
T Consensus 60 ~~~~a~~~ar~~indyvsrYRr~~---~v~g~~SFttm~TALNsLA----GHY~sy~--~rPlPeklk~Rl~~El~~AE~ 130 (135)
T TIGR03044 60 NKSEAQAEARQLINDYISRYRRRP---RVNGLSSFTTMQTALNSLA----GHYKSYA--NRPLPEKLKERLEKELKKAEK 130 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CcCCcccHHHHHHHHHHHH----HHhccCC--CCCCCHHHHHHHHHHHHHHHH
Confidence 355566666666667777776441 01223333 345567777 4466655 599999999999999999999
Q ss_pred HHc
Q 003157 712 AVG 714 (843)
Q Consensus 712 aLs 714 (843)
+|.
T Consensus 131 al~ 133 (135)
T TIGR03044 131 ALL 133 (135)
T ss_pred HHh
Confidence 984
No 92
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=6.1e+02 Score=25.96 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=58.5
Q ss_pred hhhcCChhhhcccC-CCCCHHHHHHhHhcC-CC--hhhhHHHHHHH-HHHHHHHHHHHHhhCHHHHHHHhh-hhhHHHHH
Q 003157 51 DVFANDPILSAFLS-PSFSSTSFSSAALSS-GS--PASTAERLHHA-IRLLENQLRSEVLSRHTDLLNQLS-SLNHAEHA 124 (843)
Q Consensus 51 ~~~~~d~~~~~FL~-~dFd~~~fan~lL~~-~~--i~~~l~kL~~~-i~eld~~I~~~V~~n~~~LL~q~~-~i~~le~~ 124 (843)
+.+..|+||.-|-+ |.|-|. ...+|.. +| -+..++||+.. .-.|=.++++ =|.++. .+..-+.
T Consensus 48 ~~~~~D~d~~rl~eIP~FlPv--l~~~i~~qTn~~~a~~lekl~Sq~~~~lctR~Q~--------Hl~~cA~aVA~dQn- 116 (217)
T KOG4515|consen 48 EKLEDDEDYKRLTEIPRFLPV--LPAVIGKQTNQGAAYTLEKLSSQPFFRLCTRLQE--------HLAVCAKAVAADQN- 116 (217)
T ss_pred ccccccHHHHHHhccchhhhh--hHHHhcCCCCcchHHHHHHhcchHHHHHHHHHHH--------HHHHHHHHHHhhHH-
Confidence 45778999988765 677776 3444443 33 23346777654 3333334432 223222 2221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 125 LSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRAL 177 (843)
Q Consensus 125 l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl 177 (843)
.+-..+..+..++.+|=.+..+--+.-..--.++.++.+-++.|+++...|
T Consensus 117 --~lv~r~K~v~~s~~tLf~~~~~~qk~ya~yaeq~~k~n~ls~~l~riq~~l 167 (217)
T KOG4515|consen 117 --KLVARCKSVEASMITLFEETRAHQKQYAGYAEQLSKLNQLSDDLCRIQIIL 167 (217)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233344555555555544444444455556677777777777765543
No 93
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.22 E-value=4.3e+02 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 83 ASTAERLHHAIRLLENQLRSE-VLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVR 143 (843)
Q Consensus 83 ~~~l~kL~~~i~eld~~I~~~-V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr 143 (843)
.+.++++..+++++++++-.. ....+++++ ..+..+++.+..++..+-.++..+..+.
T Consensus 145 ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l---~~i~~l~~~~~~~r~~l~~~~r~l~~l~ 203 (316)
T PRK11085 145 ADEIENIYSDLEKLSRVIMEGHQGDEYDEAL---STLAELEDIGWKVRLCLMDTQRALNFLV 203 (316)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666666321 001233444 3355556656666666666666666554
No 94
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=30.02 E-value=2.7e+02 Score=27.04 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 003157 117 SLNHAEHALSTVRSAVSSL 135 (843)
Q Consensus 117 ~i~~le~~l~~i~~~i~~L 135 (843)
.++.....+..|...+..|
T Consensus 45 ~~~~~~~~l~~i~~~l~~L 63 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEEL 63 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.00 E-value=1.4e+03 Score=30.09 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCchhhhHhhhchhhHHHHHHHHHHHHh
Q 003157 378 LTDRVWEGLVKAFANQMKSAFTASSFVKEIFTSGYPKLLSMIENLLERIS 427 (843)
Q Consensus 378 l~~~FW~~la~~~~~~~~~a~~~s~~v~q~L~~~yPkllrl~~~l~~rl~ 427 (843)
+...+...+...+.++++...+.- --.+.|..+-.||+.-.++-.++|+
T Consensus 1665 ~lq~~~~~~~~l~~~r~~g~~~ar-~rAe~L~~eA~~Ll~~a~~kl~~l~ 1713 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLEKRMEGSQAAR-ERAEQLRTEAEKLLGQANEKLDRLK 1713 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665443321 1134455556666655555544443
No 96
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=29.97 E-value=3.1e+02 Score=23.63 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHAL-STVRSAVSSLQSSVRRVRSELSDPYKSIKS 155 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l-~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~ 155 (843)
..+..+....+.+.++|.. ...+.+.+...+..+......- ..|+..+..|+..++.|...+.+....++.
T Consensus 34 ~~~~~~~~~~~~~~~ei~~-~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIES-RQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
No 97
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=29.72 E-value=2.1e+02 Score=29.96 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=42.8
Q ss_pred CHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 107 RHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLR 184 (843)
Q Consensus 107 n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~ 184 (843)
+|.+||....=-..-.++++-+.-++..|+...++|+.++.+=-+.++.+-....++|...--|-.+.-+-.+...|.
T Consensus 24 ~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~ 101 (225)
T PF04340_consen 24 RHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALD 101 (225)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHH
T ss_pred hCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 455566655433344567788888888888888888888888888888888888877776655555544444444444
No 98
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=29.52 E-value=1e+03 Score=29.73 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 93 IRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQH 172 (843)
Q Consensus 93 i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~ 172 (843)
...+-.++.+.+.+|..+|+. .+.+|.-++.|...+..|-+++...--.+...++.|+||-
T Consensus 485 ~svi~THLsevir~~a~ellg-----------rQEvq~LLD~L~~~~p~LVeElvp~~l~l~~Iq~VLq~LL-------- 545 (697)
T PRK06012 485 STVVATHLTEVIKNHAAELLG-----------RQEVQQLLDRLAKEYPKLVEELVPKVLSLGTLQKVLQNLL-------- 545 (697)
T ss_pred HHHHHHHHHHHHHHhHHHHhC-----------HHHHHHHHHHHHHhChHHHHHhccccCCHHHHHHHHHHHH--------
Confidence 344556666666666666553 3566777777788888887775432222333333333321
Q ss_pred HHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 173 TIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKVLE 247 (843)
Q Consensus 173 ~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~ 247 (843)
+ +. -+.||+......+.|--..-+| -....+.+|..+.++....+.
T Consensus 546 -----------~----E~---VSIRdL~tIlEaLad~a~~~kD-----------~~~LtE~VR~aL~RqI~~~~~ 591 (697)
T PRK06012 546 -----------K----ER---VSIRDLRTILETLADYAPITKD-----------PDELTEHVRQRLGRQIVQQYK 591 (697)
T ss_pred -----------h----CC---CccccHHHHHHHHHHHhccCCC-----------HHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 1346666665555554333221 223455667777766666664
No 99
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=29.06 E-value=7e+02 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 003157 205 LHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEA 242 (843)
Q Consensus 205 ~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a 242 (843)
.+.||-.-....||.| ++|+.....++...+++....
T Consensus 131 ~L~eI~mAqdFQDLTG-QvI~kVi~~v~~vE~~L~~ll 167 (214)
T PRK11166 131 QLLEIMMAQDFQDLTG-QVIKRMMDVIQEIERQLLMVL 167 (214)
T ss_pred HHHHHHHHccchHhHh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444456666 788888887777777766553
No 100
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.01 E-value=8.1e+02 Score=26.95 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.4
Q ss_pred CCHHHHHHhHhcC
Q 003157 67 FSSTSFSSAALSS 79 (843)
Q Consensus 67 Fd~~~fan~lL~~ 79 (843)
||-..-+..+..+
T Consensus 94 FN~e~varai~~~ 106 (319)
T PF02601_consen 94 FNDEEVARAIAAS 106 (319)
T ss_pred cChHHHHHHHHhC
Confidence 5666666655543
No 101
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=28.30 E-value=5.3e+02 Score=24.57 Aligned_cols=69 Identities=14% Similarity=0.328 Sum_probs=42.6
Q ss_pred HHHHHHHhhCHHHHHH--HhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHH
Q 003157 98 NQLRSEVLSRHTDLLN--QLSSLNHAEHALS---TVRSAVSSLQSSVRRVRSELSDPYKSIKSKTI--QLSNLHRT 166 (843)
Q Consensus 98 ~~I~~~V~~n~~~LL~--q~~~i~~le~~l~---~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~--~L~rL~~t 166 (843)
++..++|..-|+.+=. ...+++.++..+. ..+..|-.=...+.|++.+|-+||++++.... ..+-+.+.
T Consensus 37 ~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ynq~qe~~k~~~~~s~kqv 112 (125)
T PF13256_consen 37 EQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDYYNQIQEELKVNKSESVKQV 112 (125)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3344444555555532 3445666666554 44455555566788999999999999998776 44444433
No 102
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.14 E-value=7.1e+02 Score=26.00 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHh
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQL 115 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~ 115 (843)
+.+...++..+.+-...+...-++|-..+
T Consensus 62 ~~~~~~~~~~~~~A~~Al~~G~EdLAr~A 90 (219)
T TIGR02977 62 SRLEAQVADWQEKAELALSKGREDLARAA 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555555666666665544
No 103
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=27.68 E-value=8.9e+02 Score=27.70 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHH
Q 003157 231 VKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNK 281 (843)
Q Consensus 231 v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~ 281 (843)
+.++...|++........+....=+..+.++-+++-|++.+..-|+.++.|
T Consensus 302 LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D 352 (370)
T PLN03094 302 AAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGD 352 (370)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555554433333222222345778888889999888888888877
No 104
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=27.39 E-value=2.9e+02 Score=26.33 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=35.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003157 628 DNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHAS 689 (843)
Q Consensus 628 ~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~has 689 (843)
-+.+|.|+..+..-+..|.+.+-..+.+ +...+++..++..+.+.|...++
T Consensus 30 Pt~~S~yV~~il~Pl~~F~~~~~~~~~~-----------~~~~~~~~~v~~~v~~~y~~~~~ 80 (125)
T PF12022_consen 30 PTKPSPYVSSILRPLKSFLEEYSSYLSP-----------EIIEEWLQKVITEVTERYYEIAS 80 (125)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhccCCH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999988888888887444432 34555566666666677877654
No 105
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.25 E-value=2.6e+02 Score=28.57 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh------CHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 003157 87 ERLHHAIRLLENQLRSEVLS------RHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSI 153 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~------n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i 153 (843)
.+|-..+.+++..|.++... .|..--+|+++++++...+..|+..++..--.+++| .++..|-+.+
T Consensus 116 n~lv~r~K~v~~s~~tLf~~~~~~qk~ya~yaeq~~k~n~ls~~l~riq~~l~~~Vp~le~l-N~~L~~~eRL 187 (217)
T KOG4515|consen 116 NKLVARCKSVEASMITLFEETRAHQKQYAGYAEQLSKLNQLSDDLCRIQIILEDIVPMLETL-NEILTPDERL 187 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhcCCccccc
Confidence 45666666777666665543 566667778888888887888888888888888877 3455554443
No 106
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=27.25 E-value=3.9e+02 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 003157 123 HALSTVRSAVSSLQSSVRRVRSELSDPY 150 (843)
Q Consensus 123 ~~l~~i~~~i~~L~~s~~RLr~~I~ePy 150 (843)
..+..|+..++.+..-+..|+.++..-|
T Consensus 57 ~~l~~mK~DLd~i~krir~lk~kl~~~y 84 (88)
T PF10241_consen 57 KLLKEMKKDLDYIFKRIRSLKAKLAKQY 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445666677777777777777665544
No 107
>PRK01156 chromosome segregation protein; Provisional
Probab=27.14 E-value=8.3e+02 Score=31.17 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 122 EHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 122 e~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
+..+..++..+..|...++++..++-+--+.+......++++.
T Consensus 680 ~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~ 722 (895)
T PRK01156 680 EDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444444444444444333333333333333333
No 108
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.91 E-value=4e+02 Score=23.28 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 117 SLNHAEHALSTVRSAVSSLQSSVRRV 142 (843)
Q Consensus 117 ~i~~le~~l~~i~~~i~~L~~s~~RL 142 (843)
.+.++...++.+..++..|+..+..|
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333
No 109
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.78 E-value=1.2e+03 Score=28.02 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=57.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhc------ccchhhhhhHHHHhhh--hcchHHHHHHHHHHHHHHHHH
Q 003157 219 SGIDVINEELLWVKEVGEKLRNEAMKVLEG--GME------GLNQAQVGTGLQVFYN--LGELKVTVEHLVNKYKNMGVK 288 (843)
Q Consensus 219 ~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~--gl~------~~n~~~v~saLqv~~n--Lg~L~~~v~~lv~~~~~~~~k 288 (843)
..-..++.+.+.+...-.+........... +.. .++.=.+-+.+.|+++ ||.|.+.+..=.+.++.++.+
T Consensus 162 l~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~ 241 (519)
T KOG0159|consen 162 LQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKK 241 (519)
T ss_pred cCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHH
Confidence 334555566665555555555554444432 111 1122235566666665 566665544444454444554
Q ss_pred HHHHhhchhhhhcCCCCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 289 SVNVALDMKAISGGGAGFGPGGIRGSGTPQIGGGVKAREGLWQRMGTCMDQLHSAVVAVW 348 (843)
Q Consensus 289 ~i~~ald~~~Ls~~~~~~~~~~~r~~~~p~~~~~~~~~~~lw~~le~~~d~i~~~~~~v~ 348 (843)
-+...+++-. .|+.-|-..+ ..|+.+.+.+|.+...|....
T Consensus 242 ~F~~s~~l~~--------~p~l~r~~~t-----------~~wk~~~~~~D~i~~~~~~~I 282 (519)
T KOG0159|consen 242 MFESSAQLML--------MPSLWRYFPT-----------KVWKDFVRAWDQIFDVGDKYI 282 (519)
T ss_pred HHHhHHHHHh--------cchHHHhCCC-----------hHHHHHHHHHHHHHHHHHHHH
Confidence 4444444221 0111122222 359999999999988887664
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.62 E-value=1.1e+03 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLR 101 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~ 101 (843)
..++....+|+++++.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~ 55 (420)
T COG4942 38 KQLKQIQKEIAALEKKIR 55 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666664
No 111
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=26.26 E-value=5.9e+02 Score=24.43 Aligned_cols=19 Identities=5% Similarity=0.115 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003157 87 ERLHHAIRLLENQLRSEVL 105 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~ 105 (843)
+.+....+.|.+.|+.++.
T Consensus 12 e~Vi~~TE~vTk~IqeLl~ 30 (123)
T PF12205_consen 12 EDVIRRTEQVTKRIQELLR 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666677777765443
No 112
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.98 E-value=1.7e+03 Score=29.68 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=68.8
Q ss_pred hhhcccCCCCCHHHHHHhHhc-CCChhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 003157 58 ILSAFLSPSFSSTSFSSAALS-SGSPASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQ 136 (843)
Q Consensus 58 ~~~~FL~~dFd~~~fan~lL~-~~~i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~ 136 (843)
+|+.|+...|+-.. .+.. .....+.+..+...+.+++.++......-....-+.-..++.++..+..+...+..|.
T Consensus 799 eY~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~ 875 (1201)
T PF12128_consen 799 EYEDWLQEEWDKVD---ELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLR 875 (1201)
T ss_pred HHHHHHHHHHHhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888887532 1110 1125566777777788888887655555444444444456666666677777777777
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 137 SSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIR 175 (843)
Q Consensus 137 ~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~r 175 (843)
..+..+ ..+..|..........-+++..+.+++..-.+
T Consensus 876 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1201)
T PF12128_consen 876 DLLEKL-AELSEPPNAEDAEGSVDERLRDLEDLLQRRKR 913 (1201)
T ss_pred HHHhhh-hhcCCCCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 777777 66666666655554444555555555554444
No 113
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.74 E-value=4.4e+02 Score=24.66 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 83 ASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 83 ~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
.++++-|+.+++++...|+ ...=..+.+.....+-++.+...+..|..++..++.+|.+
T Consensus 7 ~~q~~~l~~~v~~lRed~r-------~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 7 HQQLGTLNAEVKELREDIR-------RSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3566777888888877776 2222334444456666778888888888888888887765
No 114
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.60 E-value=9.9e+02 Score=26.83 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 93 IRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQH 172 (843)
Q Consensus 93 i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~ 172 (843)
-+-+...|++++. +-+-|-+-...+++-+...+.++.+-+.|....-+.+.-+. +....+..|+-+- .=++.
T Consensus 70 ~~llq~kirk~~e-~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~----k~k~~~q~LE~li---~~~~E 141 (401)
T PF06785_consen 70 GQLLQTKIRKITE-KDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFM----KTKGDIQHLEGLI---RHLRE 141 (401)
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhcchHHHHHHHH---HHHHH
Confidence 4556666655443 33444444455665555566666666666666666665322 2222222222110 00000
Q ss_pred HHHHHHHHHHHHHhhccccC---CC------chHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003157 173 TIRALRLSKKLRDLIAPAEA---EP------EKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNE 241 (843)
Q Consensus 173 ~~rfl~L~kRL~~~~~~~~~---~~------~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~ 241 (843)
=-.||+.++++... |+ -.+++.++-....+|..-++..-...-.+++..+..|.+.+.+|..-
T Consensus 142 ------En~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 142 ------ENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred ------HHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 01122222211100 00 01445555555555555454444445577777777787877777773
No 115
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=4.7e+02 Score=28.44 Aligned_cols=69 Identities=9% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 003157 83 ASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSN 162 (843)
Q Consensus 83 ~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~r 162 (843)
+..+..++.....+.++|+ .--..++++...++..+..+..++..+++++.+|-+--+.|..+...|+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~-----------~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIE-----------SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.00 E-value=1.4e+03 Score=28.56 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHR 165 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~ 165 (843)
++-|++.+++|+..|. +.+-.+...+..|+.+....++...+|.+--..|+..+..|.+|-.
T Consensus 446 letLn~k~qqls~kl~------------------Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQ------------------DVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHhhhhh------------------hheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhcc----------CCCCchHHHHHHHHHHHHHH
Q 003157 166 TTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKE----------YDLSGIDVINEELLWVKEVG 235 (843)
Q Consensus 166 t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~----------~~L~~I~vV~~~~~~v~~~r 235 (843)
-...|-+ +=.+++.+..........|-++-.-=..|.+-+++ ..|..|++......-++.-=
T Consensus 508 Ekq~l~~--------qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 508 EKQELNH--------QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred HHHHHHH--------HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 003157 236 EKLRNEAMKVLE 247 (843)
Q Consensus 236 ~~v~~~a~~~L~ 247 (843)
....-..++...
T Consensus 580 ~~q~lake~~yk 591 (1118)
T KOG1029|consen 580 NSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHH
No 117
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.99 E-value=1.4e+03 Score=28.33 Aligned_cols=239 Identities=10% Similarity=0.134 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCCCC----CCCCCCCHHHH--------HHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q 003157 449 AAIEIFQTAFLTLCLTRLSDLVNSVFPMS----SRGSVPSKEQI--------SRILSRIQEEIEAVHMD-GRLTLLVLRE 515 (843)
Q Consensus 449 ~sl~~fe~ayLsrs~~Rl~~~v~~~Fp~~----~r~~~Ps~~el--------~~i~r~i~~EL~~a~~d-~~L~~~v~~~ 515 (843)
+-+.++.+.|+.+....+.+-+...+.-. ..+.+|..++. ..+.+.|..-|+.+..- ..|...+.++
T Consensus 329 ~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~ 408 (667)
T KOG2286|consen 329 KHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRS 408 (667)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHH
Confidence 34777788888888877777555443100 00122322222 23455555578887644 5666677777
Q ss_pred HHHHHHHHHHHHHhhcccCCCccccCCCCCHHHH---HHHH--HHHHHHHHHHHHHHhhcCCcHHHHHhhhhhHHHHHHH
Q 003157 516 IGKVLILVAERAEYQISTGPEARQIPGPATSAQI---KNFA--LCQHLQEIYTRMSSMITGLPPIAAEVLSPSLGTIYGV 590 (843)
Q Consensus 516 v~k~l~l~~~k~e~~l~~~~~a~qv~~~~t~~Q~---~N~~--L~n~l~~~~~~l~~~l~~~p~~~~~~l~~sl~~~~~~ 590 (843)
..+-+..|....-...- --+..+ + ..|. .++. +.|.-..+...+..+-+.+ +.+..-++.+..+
T Consensus 409 ~~~~v~~f~~~~~~~~~----~~~e~~-~-~~~~~~l~~y~iA~~N~~~~~a~~~~~~~~~~-----d~~~~~l~~~~~i 477 (667)
T KOG2286|consen 409 LLSEVPSFARNYPKAQD----EDQESH-R-REQPEGLREYLIANINNNLKMAMLMVNLKSKY-----DTLKGLLDGFIEI 477 (667)
T ss_pred HHHHhHHHHHHHHHhHH----HHHHhc-h-hcccccHHHHHHHHHhchhHHHHHHHHHHhcc-----chhHHHhHHHHHH
Confidence 77777777663322111 111112 2 2222 2333 3344444444444433333 3344455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHH
Q 003157 591 ACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICT 670 (843)
Q Consensus 591 ~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 670 (843)
....+.-|+..+...++..+-++-...|-... -|+-++..+ ++||.-|.+- -.++...|
T Consensus 478 ~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g~-----------~~~~Iv~T~----~dy~~D~~~~----~~~~f~~f-- 536 (667)
T KOG2286|consen 478 AKHGVSGLLEEIFLDLQPLLNKLFTKEWCAGS-----------VTENIVATL----DDYLPDFKEL----MGEYFVRF-- 536 (667)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhhhchh-----------hHHHHHHHH----HHHHHHHHHH----hhhHHHHH--
Confidence 67777888888888888888776666676321 133333333 3455444321 00223344
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHcccCCCcc
Q 003157 671 RLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVGQNLFPVE 721 (843)
Q Consensus 671 ~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs~~l~~~~ 721 (843)
+..+-..++..|++|.+-=|--...+-.+|..|...|-.-.+.+..++.
T Consensus 537 --i~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~~~~~~ 585 (667)
T KOG2286|consen 537 --IEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKYGSDVD 585 (667)
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhCcchh
Confidence 4445555557788777666654446777899999888877766666443
No 118
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.87 E-value=8.8e+02 Score=26.54 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-------HHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDP-------YKSIK 154 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~eP-------y~~i~ 154 (843)
+.+...+|...=.||+ +|+.|...=-+|-++.-=+.-+.+-.|..-+-.|.+|+..++.+|+...+. |..|-
T Consensus 77 Lkes~~~l~dRetEI~-eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 77 LKESENRLHDRETEID-ELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDIN 155 (305)
T ss_pred HHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHH
Q 003157 155 SKTIQLSNLHRTTEL 169 (843)
Q Consensus 155 ~~t~~L~rL~~t~~L 169 (843)
-++..|+.|-+.+++
T Consensus 156 iQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 156 IQNKKLESLLQSMEL 170 (305)
T ss_pred hhHhHHHHHHHHHHH
No 119
>PRK10698 phage shock protein PspA; Provisional
Probab=24.32 E-value=8.5e+02 Score=25.62 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHH--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQ--------LSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKT 157 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q--------~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t 157 (843)
+.++...+...+++-...+...-++|-.. ...+..++..++..+..+..|...+.+|+.+|.+-..+-..+.
T Consensus 61 ~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 61 IEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666676776554 2234556666666666666666666666666655555444444
Q ss_pred HHHH
Q 003157 158 IQLS 161 (843)
Q Consensus 158 ~~L~ 161 (843)
.+..
T Consensus 141 aR~~ 144 (222)
T PRK10698 141 LRHQ 144 (222)
T ss_pred HHHH
Confidence 3333
No 120
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.15 E-value=3.7e+02 Score=22.83 Aligned_cols=15 Identities=0% Similarity=0.178 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003157 128 VRSAVSSLQSSVRRV 142 (843)
Q Consensus 128 i~~~i~~L~~s~~RL 142 (843)
+...+......++.|
T Consensus 9 LE~~la~qe~~ie~L 23 (69)
T PF04102_consen 9 LEIKLAFQEDTIEEL 23 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 121
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=24.02 E-value=7.8e+02 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 003157 125 LSTVRSAVSSLQSSVRRVRSELSDPYKSIK 154 (843)
Q Consensus 125 l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~ 154 (843)
+..+-..+-+|..-+++|...+.+-|+.+.
T Consensus 74 iarvA~lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 74 IANVASLVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555455444
No 122
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=23.46 E-value=6.9e+02 Score=24.24 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 003157 200 TKAAQLHCEIVTMC 213 (843)
Q Consensus 200 ~kaA~~l~EL~~Ll 213 (843)
-+.-.+|.+|+.+.
T Consensus 120 ~~mi~iL~~Ie~l~ 133 (142)
T PF04048_consen 120 KEMIEILDQIEELR 133 (142)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444554443
No 123
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.31 E-value=9.1e+02 Score=25.59 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQLSS-LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLH 164 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~-i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~ 164 (843)
++++....+.++.+=...+...-++|-..+-. +..++..+...+..+..+...+++|+..+..-..+|........-+-
T Consensus 61 ~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 61 LEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666777666554 66788888888888888888888888888777776666665554444
Q ss_pred H
Q 003157 165 R 165 (843)
Q Consensus 165 ~ 165 (843)
.
T Consensus 141 a 141 (225)
T COG1842 141 A 141 (225)
T ss_pred H
Confidence 3
No 124
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.31 E-value=1.3e+03 Score=27.26 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
....|+..+|+++++.-+ .-.++...++..+..+++..+.--..+++|+.+|..-.++|+.+.....-|
T Consensus 288 ~ea~k~s~~i~~l~ek~r-----------~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 288 QEAMKISQKIKTLREKWR-----------ALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003157 164 HRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAM 243 (843)
Q Consensus 164 ~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~ 243 (843)
|.-.+-=+=..-=+.+...=+.++. +++-+.---..+|.....+.+|.-=..++.....+.+-..-+-+...
T Consensus 357 ~~q~~kq~Is~e~fe~mn~Ere~L~--------reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~ 428 (622)
T COG5185 357 HKQLRKQGISTEQFELMNQEREKLT--------RELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITR 428 (622)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH--------HHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 003157 244 KVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNKYKNMGVKSVNV 292 (843)
Q Consensus 244 ~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~~~~~~~k~i~~ 292 (843)
.--.=|-...+.....+-=|-++...-+...|..+++++...+.-.+..
T Consensus 429 ~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~ 477 (622)
T COG5185 429 SRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKT 477 (622)
T ss_pred cHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHH
No 125
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.21 E-value=1.5e+03 Score=28.24 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 003157 125 LSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQL 160 (843)
Q Consensus 125 l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L 160 (843)
+..++..++.|+...++|.. .|+.|...+..|
T Consensus 581 L~~l~e~~~~l~~~ae~Lae----R~e~a~d~Qe~L 612 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAE----RYEEAKDKQEKL 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45555556666655555543 455555554443
No 126
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=23.12 E-value=1.8e+03 Score=28.92 Aligned_cols=188 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHH-------HHHHhhCHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 003157 84 STAERLHHAIRLLENQL-------RSEVLSRHTDLLNQLSS-LNHAEHALSTVRSAVSSLQSSVRRVRSELS-------- 147 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I-------~~~V~~n~~~LL~q~~~-i~~le~~l~~i~~~i~~L~~s~~RLr~~I~-------- 147 (843)
.++.++.++++-|.+.+ .+.|..+|+.||...++ |.++|..-..=-.++...-.-+++|+.+|.
T Consensus 1070 eQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~R 1149 (1439)
T PF12252_consen 1070 EQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIR 1149 (1439)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHH----HHHHHHHHHHHHhhcc-
Q 003157 148 -------DPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDL----TKAAQLHCEIVTMCKE- 215 (843)
Q Consensus 148 -------ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl----~kaA~~l~EL~~Ll~~- 215 (843)
.-|..|+++..+|+.+|...-- ...+.+++++..+..+.- .+..|+ .+.--.+.+++.+-++
T Consensus 1150 mh~~~dkVDFSDIEkLE~qLq~~~~kL~d----Ayl~eitKqIsaLe~e~P--KnltdvK~missf~d~laeiE~LrnEr 1223 (1439)
T PF12252_consen 1150 MHSGTDKVDFSDIEKLEKQLQVIHTKLYD----AYLVEITKQISALEKEKP--KNLTDVKSMISSFNDRLAEIEFLRNER 1223 (1439)
T ss_pred hccCCCcccHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHhhCC--CchhhHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-hhhhhhHHHHhhhhcchHHHHHH
Q 003157 216 ----------YDLSGIDVINEELLWVKEVGEKLRNEAMKVLEGGMEGLN-QAQVGTGLQVFYNLGELKVTVEH 277 (843)
Q Consensus 216 ----------~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~L~~gl~~~n-~~~v~saLqv~~nLg~L~~~v~~ 277 (843)
-|+++|+-.+..+..+...-....-...+.....|+..+ ..+--.+-+.|..|..|.++++.
T Consensus 1224 IKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~ 1296 (1439)
T PF12252_consen 1224 IKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDD 1296 (1439)
T ss_pred hhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcc
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.03 E-value=8.5e+02 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003157 88 RLHHAIRLLENQLRS 102 (843)
Q Consensus 88 kL~~~i~eld~~I~~ 102 (843)
.+...|+.+.+++.+
T Consensus 279 ~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 279 ATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444433
No 128
>PRK02224 chromosome segregation protein; Provisional
Probab=22.69 E-value=7e+02 Score=31.70 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 003157 126 STVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHR 165 (843)
Q Consensus 126 ~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~ 165 (843)
+.+...+..+...++.++.++.+-..........++.+..
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 129
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.56 E-value=1.4e+03 Score=27.54 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 003157 490 RILSRIQEEIEAVHMDGRLTLLVLREIGKVLILVAERAEYQIS 532 (843)
Q Consensus 490 ~i~r~i~~EL~~a~~d~~L~~~v~~~v~k~l~l~~~k~e~~l~ 532 (843)
.-+..+..+|+....|-..+......+...+..+..+++.++.
T Consensus 451 ~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 451 DEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666778888777888888888888887776654
No 130
>PF14282 FlxA: FlxA-like protein
Probab=22.42 E-value=2.9e+02 Score=25.59 Aligned_cols=60 Identities=17% Similarity=0.335 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
.+..+++|+..|..|.++|.++-.... ...+.-+..+..|+..|..|+..+.+++.+..+
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~-------~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSD-------LDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999973333211 123334455677777777777777777665543
No 131
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.19 E-value=3.4e+02 Score=29.50 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 003157 121 AEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHR 165 (843)
Q Consensus 121 le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~ 165 (843)
++..+..++..++.++..++.+.++-..--.+|+.+...|+|.+.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK 211 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQK 211 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456777888888888888888888888888888888888664
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.07 E-value=1.9e+03 Score=28.96 Aligned_cols=31 Identities=29% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHhHhcCCChh-hhHHHHHHHHHHHHHHHH
Q 003157 71 SFSSAALSSGSPA-STAERLHHAIRLLENQLR 101 (843)
Q Consensus 71 ~fan~lL~~~~i~-~~l~kL~~~i~eld~~I~ 101 (843)
.....+|.+.+++ +.+++|.+.++++.++|.
T Consensus 1211 ~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~ 1242 (1758)
T KOG0994|consen 1211 EEIRAILSAPSVSAEDIAQLASATESLRRQLQ 1242 (1758)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3456777777754 568999999999999885
No 133
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.04 E-value=9.9e+02 Score=25.59 Aligned_cols=92 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+..+..++..+|+++.+++.+.=..- .=.......++|+.-++..+..+.+|...+.++..++..--+.+......+.
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 003157 162 NLHRTTELLQHTIR 175 (843)
Q Consensus 162 rL~~t~~LLR~~~r 175 (843)
++..-..=.+..+.
T Consensus 135 ~~e~~~~e~~~~~e 148 (239)
T COG1579 135 RLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHH
No 134
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=21.90 E-value=1.3e+03 Score=26.90 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 003157 197 LDLTKAAQLHCEIVT 211 (843)
Q Consensus 197 ~dl~kaA~~l~EL~~ 211 (843)
+|+.++...+.++..
T Consensus 253 kdi~~a~~~L~~m~~ 267 (424)
T PF03915_consen 253 KDISRASKELKKMKE 267 (424)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666655554
No 135
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.90 E-value=4.5e+02 Score=21.95 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 003157 83 ASTAERLHHAIRLLENQLRSE 103 (843)
Q Consensus 83 ~~~l~kL~~~i~eld~~I~~~ 103 (843)
...++||.-.++.++++|...
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERL 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777643
No 136
>PRK09793 methyl-accepting protein IV; Provisional
Probab=21.89 E-value=8.3e+02 Score=29.03 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.+.+.||.....+--++|.+.|.+-....-+....++.....++.|...++.+...++.+...+.+--..++.....+.
T Consensus 395 VA~EVR~LAe~t~~a~~~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~ 474 (533)
T PRK09793 395 VAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVS 474 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 003157 162 NLHRTTE 168 (843)
Q Consensus 162 rL~~t~~ 168 (843)
.+....+
T Consensus 475 ~i~~~~~ 481 (533)
T PRK09793 475 QMDQVTQ 481 (533)
T ss_pred HHHHHHH
No 137
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.70 E-value=3e+02 Score=22.57 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 003157 117 SLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTI 158 (843)
Q Consensus 117 ~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~ 158 (843)
.++++|..+..+...+..++...+.|+..|-+--+.++....
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.48 E-value=6.1e+02 Score=24.07 Aligned_cols=59 Identities=7% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSEL 146 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I 146 (843)
+|+...-+++|.=+ .....|-+..|+.-.++.++++--+.++.+-+....+..+||.+.
T Consensus 29 ~k~~~tq~QvdeVv-~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVV-DIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHH-HHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 455678899999999999999989999999999999999998874
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.08 E-value=9.3e+02 Score=24.90 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 85 TAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLN-HAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 85 ~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~-~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
--.+|..+|..+.++++ -++|+.... .++.-++.++..+..|.....+|...-..-....+.+...+..|
T Consensus 37 ~na~L~~e~~~L~~q~~---------s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 37 GNAQLAEEITDLRKQLK---------SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888887 456776644 67888899999999999999999888888888888888888877
Q ss_pred HH-HHHHHHHHHH
Q 003157 164 HR-TTELLQHTIR 175 (843)
Q Consensus 164 ~~-t~~LLR~~~r 175 (843)
+. ...++...--
T Consensus 108 qeen~kl~~e~~~ 120 (193)
T PF14662_consen 108 QEENGKLLAERDG 120 (193)
T ss_pred HHHHhHHHHhhhh
Confidence 74 3344444333
No 140
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.94 E-value=3.6e+02 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 003157 118 LNHAEHALSTVRSAVSSLQSSV 139 (843)
Q Consensus 118 i~~le~~l~~i~~~i~~L~~s~ 139 (843)
|+.++..+..++.++..|+..+
T Consensus 13 Ik~vd~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 13 IKAVDDKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444333
No 141
>PRK04406 hypothetical protein; Provisional
Probab=20.87 E-value=4.4e+02 Score=22.92 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=4.1
Q ss_pred HHHHHHhh
Q 003157 180 SKKLRDLI 187 (843)
Q Consensus 180 ~kRL~~~~ 187 (843)
..||+..-
T Consensus 52 ~~rl~~~~ 59 (75)
T PRK04406 52 VGKVKNMD 59 (75)
T ss_pred HHHHHhhc
Confidence 45665543
No 142
>PRK02119 hypothetical protein; Provisional
Probab=20.68 E-value=4.2e+02 Score=22.86 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=4.5
Q ss_pred HHHHHHHhh
Q 003157 179 LSKKLRDLI 187 (843)
Q Consensus 179 L~kRL~~~~ 187 (843)
|..||+..-
T Consensus 49 L~~rl~~~~ 57 (73)
T PRK02119 49 MANKLKDMQ 57 (73)
T ss_pred HHHHHHhhc
Confidence 345665543
No 143
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.55 E-value=4.8e+02 Score=22.41 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 89 LHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 89 L~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
+...|.+|+.++. -|-..|+++..+|..-+..|+.|+..+..|+.++.+
T Consensus 6 ~e~Ri~~LE~~la-----------fQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLA-----------FQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 144
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=20.32 E-value=8.4e+02 Score=24.11 Aligned_cols=48 Identities=10% Similarity=0.248 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVR 140 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~ 140 (843)
-.+++.|+..|+.+-..-+. .+..++++.- ..+++++..+..|-..+.
T Consensus 52 ~e~CL~ri~~GL~~yq~lL~-~l~~~~~~~~----------~~v~~Lq~~~~~L~~~i~ 99 (154)
T PF00489_consen 52 KETCLSRIHSGLQEYQILLK-YLQGEFPGLK----------ENVESLQLDTKDLAQTIK 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTTSSTTTH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccch----------hHHHHHHHHHHHHHHHHH
Confidence 45789999999988777663 3333333322 334555555555544444
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.28 E-value=7.8e+02 Score=25.70 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQ 99 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~ 99 (843)
..+++|...+++++.+
T Consensus 100 ~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 100 NQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3344444444444433
No 146
>PRK00846 hypothetical protein; Provisional
Probab=20.25 E-value=5.4e+02 Score=22.63 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
..+...|.+|+.++. -|-..|+.+..++..-+..|+.|+..+++|..++.+
T Consensus 9 ~~le~Ri~~LE~rlA-----------fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 9 QALEARLVELETRLS-----------FQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 147
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.19 E-value=8.4e+02 Score=25.85 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 116 SSLNHAEHALSTVRSAVSSLQSSVRRVRS 144 (843)
Q Consensus 116 ~~i~~le~~l~~i~~~i~~L~~s~~RLr~ 144 (843)
..+-.+++.+..++..+......+.++..
T Consensus 151 ~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 151 RELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444666666777777777777754443
No 148
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.13 E-value=8.2e+02 Score=29.49 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003157 125 LSTVRSAVSSLQSSVRRV 142 (843)
Q Consensus 125 l~~i~~~i~~L~~s~~RL 142 (843)
|..++.-+.+++..++++
T Consensus 445 L~~~~~tl~~l~~~l~~l 462 (547)
T PRK10807 445 LSESQRTMRELQTTLDSL 462 (547)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444433
No 149
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=20.01 E-value=1.3e+03 Score=26.30 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRS 102 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~ 102 (843)
+..|......+-.++..
T Consensus 229 ld~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 229 LDELVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44444444444444443
No 150
>PRK04325 hypothetical protein; Provisional
Probab=20.01 E-value=4.5e+02 Score=22.74 Aligned_cols=9 Identities=33% Similarity=0.493 Sum_probs=4.8
Q ss_pred HHHHHHHhh
Q 003157 179 LSKKLRDLI 187 (843)
Q Consensus 179 L~kRL~~~~ 187 (843)
|..||+...
T Consensus 49 L~~rl~~~~ 57 (74)
T PRK04325 49 LYQQMRDAN 57 (74)
T ss_pred HHHHHHHhc
Confidence 445666543
Done!