Query 003157
Match_columns 843
No_of_seqs 165 out of 222
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fji_1 Exocyst complex compone 97.7 0.0056 1.9E-07 68.5 25.4 270 451-744 9-325 (399)
2 2a2f_X Exocyst complex compone 96.1 0.08 2.7E-06 57.3 15.0 233 481-737 70-316 (325)
3 3ns4_A Vacuolar protein sortin 93.1 0.055 1.9E-06 56.0 3.8 61 648-718 13-90 (271)
4 3swh_A MUNC13-1, protein UNC-1 91.6 7.3 0.00025 42.2 18.5 122 484-613 54-185 (341)
5 3n1e_A Vacuolar protein sortin 90.4 3.6 0.00012 38.8 12.6 102 593-716 23-126 (141)
6 2olt_A Hypothetical protein; s 86.4 29 0.00098 34.8 20.6 185 84-281 21-219 (227)
7 3ghg_A Fibrinogen alpha chain; 73.7 66 0.0023 36.3 15.7 74 88-162 61-142 (562)
8 1jcd_A Major outer membrane li 58.9 26 0.00087 27.2 6.2 47 116-162 4-50 (52)
9 1m1j_B Fibrinogen beta chain; 54.8 2.1E+02 0.0071 32.1 15.4 36 131-166 122-157 (464)
10 3ghg_A Fibrinogen alpha chain; 54.5 69 0.0024 36.2 11.2 34 103-136 68-102 (562)
11 1ez3_A Syntaxin-1A; three heli 48.6 71 0.0024 28.7 8.9 31 84-115 12-42 (127)
12 3swy_A Cyclic nucleotide-gated 47.9 61 0.0021 24.5 6.5 42 120-161 2-43 (46)
13 3hd7_A Vesicle-associated memb 47.4 84 0.0029 27.0 8.5 60 83-146 4-63 (91)
14 3hr0_A COG4; conserved oligome 45.9 2.2E+02 0.0075 29.4 13.0 147 552-715 23-195 (263)
15 3fhn_A Protein transport prote 45.9 1.9E+02 0.0064 34.3 13.8 238 451-714 369-634 (706)
16 3swf_A CGMP-gated cation chann 44.4 50 0.0017 27.4 6.1 45 118-162 2-46 (74)
17 4hpq_C ATG17, KLTH0D15642P; au 43.5 3.7E+02 0.013 29.6 15.4 74 111-187 236-310 (413)
18 2kmf_A Photosystem II 11 kDa p 42.9 63 0.0021 29.2 7.1 71 634-714 39-112 (115)
19 2y6x_A PSB27, photosystem II 1 41.4 1.1E+02 0.0039 27.4 8.6 72 634-714 35-108 (113)
20 2dfs_A Myosin-5A; myosin-V, in 39.7 3E+02 0.01 34.4 15.1 44 127-170 974-1017(1080)
21 1deq_A Fibrinogen (alpha chain 39.6 2.4E+02 0.0081 30.6 12.1 15 87-101 63-77 (390)
22 1qu7_A Methyl-accepting chemot 36.4 3.4E+02 0.012 27.1 13.4 84 82-165 106-189 (227)
23 1n7s_A Vesicle-associated memb 35.9 1.6E+02 0.0055 23.2 8.6 58 84-145 4-61 (63)
24 1sfc_A VAMP 2, protein (synapt 35.5 1.6E+02 0.0053 25.6 8.4 59 84-146 30-88 (96)
25 1tu3_F RAB GTPase binding effe 32.6 43 0.0015 27.7 3.9 64 146-225 14-77 (79)
26 2v71_A Nuclear distribution pr 30.6 3.9E+02 0.013 26.1 16.6 62 87-148 20-81 (189)
27 1deq_A Fibrinogen (alpha chain 28.7 3.5E+02 0.012 29.3 11.2 44 82-125 65-111 (390)
28 3nmd_A CGMP dependent protein 28.6 1.1E+02 0.0038 25.3 5.7 48 86-144 21-68 (72)
29 3s4r_A Vimentin; alpha-helix, 26.7 2.9E+02 0.0098 23.8 8.5 23 122-144 55-77 (93)
30 3hnw_A Uncharacterized protein 25.7 3E+02 0.01 25.5 9.0 39 127-165 79-117 (138)
31 2xdj_A Uncharacterized protein 25.5 1.8E+02 0.0062 24.6 6.8 44 111-154 22-65 (83)
32 3b5n_A Synaptobrevin homolog 1 24.2 2.6E+02 0.0088 21.9 8.4 57 85-145 3-59 (61)
33 3hd7_B Syntaxin-1A; membrane p 24.1 3.7E+02 0.013 23.6 11.5 71 102-172 14-84 (109)
34 3swf_A CGMP-gated cation chann 23.1 2.2E+02 0.0075 23.6 6.5 42 118-159 9-50 (74)
35 2akf_A Coronin-1A; coiled coil 22.2 1.5E+02 0.005 20.0 4.2 25 121-145 4-28 (32)
36 1lwu_C Fibrinogen gamma chain; 21.8 1.5E+02 0.0053 31.5 7.0 40 111-150 21-60 (323)
37 1x9t_B N-terminl peptide of fi 21.7 19 0.00065 23.7 -0.0 9 817-825 9-17 (26)
38 1urq_A M-tomosyn isoform; tran 21.7 3.1E+02 0.011 21.9 7.6 55 87-145 7-61 (63)
39 3na7_A HP0958; flagellar bioge 21.4 6.4E+02 0.022 25.4 15.8 141 88-245 8-148 (256)
40 1nov_D Nodamura virus coat pro 21.1 1.4E+02 0.0047 22.0 4.3 42 381-423 2-43 (44)
41 1s94_A S-syntaxin; three helix 20.6 2.5E+02 0.0084 26.8 7.8 17 82-98 48-64 (180)
42 4h22_A Leucine-rich repeat fli 20.5 3.9E+02 0.013 23.5 8.0 46 127-172 34-79 (103)
43 1x79_B RAB GTPase binding effe 20.3 4.7E+02 0.016 23.4 9.1 28 121-148 50-77 (112)
44 3e98_A GAF domain of unknown f 20.1 1.7E+02 0.0058 29.9 6.8 76 108-183 50-125 (252)
No 1
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0056 Score=68.48 Aligned_cols=270 Identities=12% Similarity=0.139 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcCC------------CC--CCCCCCCHHHHHHHHHHHHHHHHHhc--CChHHHHHHHH
Q 003157 451 IEIFQTAFLTLCLTRLSDLVNSVFP------------MS--SRGSVPSKEQISRILSRIQEEIEAVH--MDGRLTLLVLR 514 (843)
Q Consensus 451 l~~fe~ayLsrs~~Rl~~~v~~~Fp------------~~--~r~~~Ps~~el~~i~r~i~~EL~~a~--~d~~L~~~v~~ 514 (843)
+..+.+.|+++....|.+-++.++- |. ..|.+. ..-...+.+.|.+-+++|. ....+...|..
T Consensus 9 ~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~-t~~~~dvfqml~eql~~a~~~~~~~l~~~v~~ 87 (399)
T 2fji_1 9 KETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLF-LDGTKTCFQMFTQQVEVAAGTNQAKILVGVVE 87 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEE-CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCee-CCchHHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 5566777777777776665555441 11 011111 2233445566666888884 44446666666
Q ss_pred HHHHHHHHHHHHHHhhcc--------------cCCCcccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHH
Q 003157 515 EIGKVLILVAERAEYQIS--------------TGPEARQI-PGPATSAQIKNFALCQHLQEIYTRMSSMITG----LPPI 575 (843)
Q Consensus 515 ~v~k~l~l~~~k~e~~l~--------------~~~~a~qv-~~~~t~~Q~~N~~L~n~l~~~~~~l~~~l~~----~p~~ 575 (843)
...+.+..|.......+. .+++...- .+.+..-+..-|+++|....|...+.++..+ ..+.
T Consensus 88 ~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~ 167 (399)
T 2fji_1 88 RFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKV 167 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccccccHHHhhhhhhccHHHHHHHHHHHHHHHHHhccHH
Confidence 666666555433322211 11111000 0112223667788999988888777776653 3333
Q ss_pred H----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhc
Q 003157 576 A----AEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLS 651 (843)
Q Consensus 576 ~----~~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~ 651 (843)
. ...+....+.+..+...++.-|++.+...+.+.+..+....|... + +|+.++..+.....+|-.
T Consensus 168 ~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~--------~---~v~~i~~ti~dy~~d~~~ 236 (399)
T 2fji_1 168 YEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMG--------S---QAQQIADTLDEYLLDIKP 236 (399)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTC--------C---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhcCC--------c---HHHHHHHHHHHHHHHHHH
Confidence 2 234666677788888889999999999999999988877777531 1 899999999888888777
Q ss_pred ccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCC---hhHHHHHHHHHHHHHHHHcccCCCccc----cc
Q 003157 652 RLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLS---ESGKLRMARDMAELELAVGQNLFPVEQ----LG 724 (843)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~---e~GklrLa~D~a~LE~aLs~~l~~~~~----lG 724 (843)
++.|. +...++..+..+++..|++..---..+. +.|..+|..|...|..-+..+...-.. +.
T Consensus 237 ~L~~~-----------~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~ 305 (399)
T 2fji_1 237 QMNSV-----------LFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLIT 305 (399)
T ss_dssp GSCHH-----------HHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhChH-----------HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 77643 5667777888888888888665322355 899999999999999988877764322 66
Q ss_pred hhHHHHHhhhhhccCCc-hhh
Q 003157 725 APYRALRAFRPLIFLET-SQL 744 (843)
Q Consensus 725 ~~y~~LRafR~LLf~~~-~~i 744 (843)
..++.|..++. |-.++ +.|
T Consensus 306 ~~~~~l~~l~~-L~~d~~~~i 325 (399)
T 2fji_1 306 QNFTVMEFFMD-LSCEPIDSI 325 (399)
T ss_dssp HHHHHHHHHHH-HHHSCGGGH
T ss_pred HHHHHHHHHHH-hcCCcHHHH
Confidence 67788888888 66666 443
No 2
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.08 E-value=0.08 Score=57.34 Aligned_cols=233 Identities=11% Similarity=0.091 Sum_probs=131.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc-CChH---HHHHHHHHHHHHHHHHHHHHHh-----hcccCCCccccCCCCCHHHH-H
Q 003157 481 SVPSKEQISRILSRIQEEIEAVH-MDGR---LTLLVLREIGKVLILVAERAEY-----QISTGPEARQIPGPATSAQI-K 550 (843)
Q Consensus 481 ~~Ps~~el~~i~r~i~~EL~~a~-~d~~---L~~~v~~~v~k~l~l~~~k~e~-----~l~~~~~a~qv~~~~t~~Q~-~ 550 (843)
.+|=+.-+-.+.+.|.+-++.+- +-.. -...+-..+.|+++.+..++-. .+..+. +|-.--.|. .
T Consensus 70 ~lPFS~~vP~~c~~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~~-----~~l~qi~Qi~i 144 (325)
T 2a2f_X 70 KFPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPS-----ITLTQLIQIII 144 (325)
T ss_dssp CSSSBTHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-----SCHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CcHHHHHHHHH
Confidence 46666666677777777777762 2111 2245666777777766554222 222211 010112232 4
Q ss_pred HHHHH-HHHHHHHHHHHHhhcCCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCC
Q 003157 551 NFALC-QHLQEIYTRMSSMITGLPPIAAEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDN 629 (843)
Q Consensus 551 N~~L~-n~l~~~~~~l~~~l~~~p~~~~~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~ 629 (843)
|+.-+ -.+.++..-+.++. +.|.... + .+.+.+......+-.-++..+...|+..+ .+-+-||.... +..
T Consensus 145 Nl~~le~ac~~le~~l~~~~-~~~~~~~--l-~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~----~~~ 215 (325)
T 2a2f_X 145 DTQYLEKAGPFLDEFVCHMT-NTERSVS--Q-TPSAMFHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVE----PPG 215 (325)
T ss_dssp HHHHHHTTHHHHHHHHHHHH-TCCC----------CCSCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC--------CC
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCcccc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCC----CCC
Confidence 54444 33455555555543 2332211 1 12222333344556778888889999988 77766776542 456
Q ss_pred CCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHH
Q 003157 630 NASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAEL 709 (843)
Q Consensus 630 ~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~L 709 (843)
.+|.||.||..|+.-.-+ -+..+++. .....+..++..++.+.+..++ . .=++=++.+|-..+..|+..|
T Consensus 216 ~ps~yi~dli~fL~~~f~-sl~~LP~~-------v~~~~~~~a~~his~~l~~~Ll-~-~~vk~in~~av~~~~~Dv~~l 285 (325)
T 2a2f_X 216 IASAFITDMISYLKSTFD-SFAFKLPH-------IAQAACRRTFEHIAEKIYSIMY-D-EDVKQISTGALTQINLDLMQC 285 (325)
T ss_dssp SCCHHHHHHHHHHHHHHH-TTTTTSHH-------HHHHHHHHHHHHHHHHHHHHHT-C-------CCTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH-HHHcCCHH-------HHHHHHHHHHHHHHHHHHHHhc-C-cchhhcCHHHHHHHHHHHHHH
Confidence 899999999999998888 47666532 3556777778888877777553 2 234459999999999999999
Q ss_pred HHHHcc-cCCCc--cccchhHHHHHhhhhhc
Q 003157 710 ELAVGQ-NLFPV--EQLGAPYRALRAFRPLI 737 (843)
Q Consensus 710 E~aLs~-~l~~~--~~lG~~y~~LRafR~LL 737 (843)
|.-+.. .+.++ ..|...+-.||-.=-|+
T Consensus 286 E~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll 316 (325)
T 2a2f_X 286 EFFAASEPVPGLKEGELSKYFLRNRQLLDLL 316 (325)
T ss_dssp HHHHTTCSSSSCCSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHhCCCCCcccchHHHHHHHHHHHHHHH
Confidence 987633 12222 23555666665444333
No 3
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.055 Score=55.96 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=50.7
Q ss_pred HhhcccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHh-hccccC---------------Chh-HHHHHHHHHHHHH
Q 003157 648 EFLSRLLPSSANTTTAGTETICTRLVRSMASRVLIFFIRHA-SLVRPL---------------SES-GKLRMARDMAELE 710 (843)
Q Consensus 648 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~la~r~i~~Fl~ha-sLlRPL---------------~e~-GklrLa~D~a~LE 710 (843)
.+++.|.-. .|.+.||++++..++ ..|+.++ -+|||+ ++. |..||.-|+..|+
T Consensus 13 ~Il~~~nR~------~Y~rnFcDK~ve~~~----~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK 82 (271)
T 3ns4_A 13 FILSQFNRD------VYKWNFLDKVIDIMT----TNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLK 82 (271)
T ss_dssp CCCGGGCHH------HHHHHHHHHHHHHHH----HHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHH------HHHHHHHHHHHHHHH----HHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHH
Confidence 356666533 588999999777777 8899999 689999 999 9999999999999
Q ss_pred HHHcccCC
Q 003157 711 LAVGQNLF 718 (843)
Q Consensus 711 ~aLs~~l~ 718 (843)
.+|-.+-.
T Consensus 83 ~~Ll~LP~ 90 (271)
T 3ns4_A 83 EIFHTLPE 90 (271)
T ss_dssp HHHHHGGG
T ss_pred HHHHHccc
Confidence 99965543
No 4
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=91.61 E-value=7.3 Score=42.24 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcC-Ch----HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccCCCCCHHHHHHHHHHHHH
Q 003157 484 SKEQISRILSRIQEEIEAVHM-DG----RLTLLVLREIGKVLILVAERAEYQISTGPEARQIPGPATSAQIKNFALCQHL 558 (843)
Q Consensus 484 s~~el~~i~r~i~~EL~~a~~-d~----~L~~~v~~~v~k~l~l~~~k~e~~l~~~~~a~qv~~~~t~~Q~~N~~L~n~l 558 (843)
|.-|++.+...+.+.+..-.+ || .+...+++.|++++..||..++..+....+.. ++..=|-++|.+
T Consensus 54 SvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e--------~~~~~Cv~lNNi 125 (341)
T 3swh_A 54 SVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKE--------KEKVPCILMNNT 125 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT--------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cccchhhhcccH
Confidence 467888888888888888765 54 35667899999999999999999776532211 134568888999
Q ss_pred HHHHHHHHHhhcC-----CcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 559 QEIYTRMSSMITG-----LPPIAAEVLSPSLGTIYGVACDSVTSLFQAMIDGLESCILQI 613 (843)
Q Consensus 559 ~~~~~~l~~~l~~-----~p~~~~~~l~~sl~~~~~~~~~~v~pL~~s~~~~ie~il~~M 613 (843)
.++...+.++..+ +.+.+.+++..--..+..+..++...+-..+...|+.++.+|
T Consensus 126 e~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m 185 (341)
T 3swh_A 126 QQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQM 185 (341)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988763 444544433222222333333333333334444444444433
No 5
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=90.37 E-value=3.6 Score=38.83 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcccccCccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHH
Q 003157 593 DSVTSLFQAMIDGLESCILQIHDQNFSVLGMDAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRL 672 (843)
Q Consensus 593 ~~v~pL~~s~~~~ie~il~~MH~e~~~~~~~~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 672 (843)
+|-.-|+.-+.+.+...+ .+|... ...+|+||+.|++-+.-+.+. ++.+.|. ...+.+....
T Consensus 23 eI~~KLv~Im~~r~~~~l-----~~Wd~k------~pvpS~~m~tl~Ke~~kLH~~-Ls~~LP~------~~v~~Im~~V 84 (141)
T 3n1e_A 23 EISAKLVAIMDSLFDKLL-----SKYEVK------APVPSPCFRNICKQMTKMHEA-IFDLLPE------EQTQMLFLRI 84 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTCCCC------SSSSCHHHHHHHHHHHHHHHH-HTTTSCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhccC------CCCCCHHHHHHHHHHHHHHHH-HHhhCCH------HHHHHHHHHH
Confidence 344445555555444333 367532 236999999999999999986 4444443 2233443333
Q ss_pred HHHHHHHHHHHHHHHhhccccCChhHHHH--HHHHHHHHHHHHccc
Q 003157 673 VRSMASRVLIFFIRHASLVRPLSESGKLR--MARDMAELELAVGQN 716 (843)
Q Consensus 673 ~~~la~r~i~~Fl~hasLlRPL~e~Gklr--La~D~a~LE~aLs~~ 716 (843)
...+= +.|-.+..-+-+-+++|+.+ ++.|+..++..|..+
T Consensus 85 f~~fk----~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L 126 (141)
T 3n1e_A 85 NASYK----LHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQAL 126 (141)
T ss_dssp HHHHH----HHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHH----HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhccc
Confidence 33333 45555577778899999987 899999999988754
No 6
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=86.41 E-value=29 Score=34.80 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNL 163 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL 163 (843)
+..+++..+...+..-+......++++.-.....+.+.|...+.++..| .+.|.+....|.+. +....-...+
T Consensus 21 ~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I------~~~L~~~~~~P~dr-edi~~L~~~l 93 (227)
T 2olt_A 21 EHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREI------RLTLPSGLFMPVER-TDLLELLTQQ 93 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHGGGCCSCSSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhccccCCCCH-HHHHHHHHHH
Confidence 4455566666666665554444445544444445555555555555444 34455555667776 5555557777
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhhccccCCCchHHHHHHHHHHHHH----HHhhccCCCC--chHHHHHHHHH--
Q 003157 164 HRTTELLQHTIRALRLSK-----KLRDLIAPAEAEPEKLDLTKAAQLHCEI----VTMCKEYDLS--GIDVINEELLW-- 230 (843)
Q Consensus 164 ~~t~~LLR~~~rfl~L~k-----RL~~~~~~~~~~~~~~dl~kaA~~l~EL----~~Ll~~~~L~--~I~vV~~~~~~-- 230 (843)
....|....+...+.+.+ .++..+.... .-+.+++..+.+. ..+++ .+.+ ..+-+.+....
T Consensus 94 D~I~D~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ai~~l~~l~e-~~~~~~~~~~~~~~~~~i~ 167 (227)
T 2olt_A 94 DKIANKAKDISGRVIGRQLLIPQALQVPFIAYL-----QRCIDAVGLAQQVINELDDLLE-AGFRGREVDFVAKMINELD 167 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-SCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-hccccccHHHHHHHHHHHH
Confidence 778888888777666541 0000000000 1122233322222 21211 1233 23444444443
Q ss_pred -HHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHhhhhcchHHHHHHHHHH
Q 003157 231 -VKEVGEKLRNEAMKVLEGGMEGLNQAQVGTGLQVFYNLGELKVTVEHLVNK 281 (843)
Q Consensus 231 -v~~~r~~v~~~a~~~L~~gl~~~n~~~v~saLqv~~nLg~L~~~v~~lv~~ 281 (843)
++.--..+...+.+.|.++-..+++..+.--..++..|+.+.+...++.+.
T Consensus 168 ~lE~~~D~l~~~~~~~Lf~~~~~~d~~~~i~~~ei~~~lE~i~D~~e~vA~~ 219 (227)
T 2olt_A 168 IIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSR 219 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555556666533446666666666666666655555444444
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.75 E-value=66 Score=36.29 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhh-HHHH------HHHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHH
Q 003157 88 RLHHAIRLLENQLRSEVLSRHTDLLNQLSSLN-HAEH------ALSTVRSAVS-SLQSSVRRVRSELSDPYKSIKSKTIQ 159 (843)
Q Consensus 88 kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~-~le~------~l~~i~~~i~-~L~~s~~RLr~~I~ePy~~i~~~t~~ 159 (843)
.|...|++|..++.+. ..|+.+.-+....+. .++. ..+.....+. .|+..+..|+.+|..-..+|+.++..
T Consensus 61 DltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555444 444444433332221 1222 2222333333 66666666666665544444444444
Q ss_pred HHH
Q 003157 160 LSN 162 (843)
Q Consensus 160 L~r 162 (843)
|++
T Consensus 140 Led 142 (562)
T 3ghg_A 140 VRA 142 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 8
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.85 E-value=26 Score=27.21 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 003157 116 SSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSN 162 (843)
Q Consensus 116 ~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~r 162 (843)
.+++.+...++.+...|+.|..-+.-++.+|..-++++..-..+|.+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35667777888888888888888888888888777777777776665
No 9
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.83 E-value=2.1e+02 Score=32.10 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 003157 131 AVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRT 166 (843)
Q Consensus 131 ~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t 166 (843)
-+..|+.+++-.+.++.+-.+.+......|++.+..
T Consensus 122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~ 157 (464)
T 1m1j_B 122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNY 157 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555544443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.48 E-value=69 Score=36.16 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=15.9
Q ss_pred HHhhCHHHHHHHhhhhhH-HHHHHHHHHHHHHHHH
Q 003157 103 EVLSRHTDLLNQLSSLNH-AEHALSTVRSAVSSLQ 136 (843)
Q Consensus 103 ~V~~n~~~LL~q~~~i~~-le~~l~~i~~~i~~L~ 136 (843)
.+.++++++-+.-..+.. .+..++.++..+..-+
T Consensus 68 ELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 68 KLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 344466666333333443 3444455554444444
No 11
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=48.63 E-value=71 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHh
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQL 115 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~ 115 (843)
..++.++.+|..|+..+. .+..-|..+|...
T Consensus 12 ~~v~~I~~~i~~i~~~v~-~l~~~~~~~L~~~ 42 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVE-EVKRKHSAILASP 42 (127)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 345667777777777774 4556666666543
No 12
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=47.85 E-value=61 Score=24.45 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 120 HAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 120 ~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
++|..++.+...++.|+..+.||=.+...-..++..+...|+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777776666666666666655554
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=47.38 E-value=84 Score=27.03 Aligned_cols=60 Identities=7% Similarity=0.179 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 83 ASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSEL 146 (843)
Q Consensus 83 ~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I 146 (843)
++.+.+++..++++..-+ ..|.+.+|+.-.+++.+.+.-+.++.+-........+++.+.
T Consensus 4 ~d~l~~vq~ev~evk~iM----~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIM----RVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp THHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888776665 467788999988888888888888888888888888887654
No 14
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=45.93 E-value=2.2e+02 Score=29.37 Aligned_cols=147 Identities=14% Similarity=0.190 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHhhcC--------CcH----H-HHHhhhhhHHHH-------HHHHHHHHHHHH-HHHHHHHHHHH
Q 003157 552 FALCQHLQEIYTRMSSMITG--------LPP----I-AAEVLSPSLGTI-------YGVACDSVTSLF-QAMIDGLESCI 610 (843)
Q Consensus 552 ~~L~n~l~~~~~~l~~~l~~--------~p~----~-~~~~l~~sl~~~-------~~~~~~~v~pL~-~s~~~~ie~il 610 (843)
+.++|.++-...-+.++..+ +|. + ..+.+...+..+ ..+...-++-|+ +.+.-.|..++
T Consensus 23 lv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikprLr~~l 102 (263)
T 3hr0_A 23 LVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWI 102 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34458888777777766542 443 1 122334443333 344555667777 45555777777
Q ss_pred HHhccccCccccc--CccCCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHHHH---HHHHHHHHH
Q 003157 611 LQIHDQNFSVLGM--DAAMDNNASPYMEELQKCILHFRSEFLSRLLPSSANTTTAGTETICTRLVRSM---ASRVLIFFI 685 (843)
Q Consensus 611 ~~MH~e~~~~~~~--~~~~~~~~S~Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l---a~r~i~~Fl 685 (843)
......+|.-..- +.-..++ +|++.+...+..+...|...+.+. ..+.++..+ ..+.++..+
T Consensus 103 ~~f~~~~y~l~eee~~~~e~~d--~~~~~F~~~w~~ll~p~k~~Lt~~-----------~y~~Ll~~~~~~la~~lE~~i 169 (263)
T 3hr0_A 103 NSFFSVSHNIEEEEFNDYEAND--PWVQQFILNLEQQMAEFKASLSPV-----------IYDSLTGLMTSLVAVELEKVV 169 (263)
T ss_dssp HGGGGSCBSCCHHHHHHHHHSC--CSHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCHhHHhhhhccc--HHHHHHHHHHHHHHHHHHHHcChH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 6544444432210 0001112 477777666666666666666543 223333322 334455555
Q ss_pred HHhhccccCChhHHHHHHHHHHHHHHHHcc
Q 003157 686 RHASLVRPLSESGKLRMARDMAELELAVGQ 715 (843)
Q Consensus 686 ~hasLlRPL~e~GklrLa~D~a~LE~aLs~ 715 (843)
.. ...++-|.+||=.|+..|=..++.
T Consensus 170 ~~----~~fn~lGal~LdrDvr~li~~~~~ 195 (263)
T 3hr0_A 170 LK----STFNRLGGLQFDKELRSLIAYLTT 195 (263)
T ss_dssp TT----CCBCHHHHHHHHHHHHHHHHHHHT
T ss_pred Hh----CCcCchhHHHHHHHHHHHHHHHHh
Confidence 43 459999999999999999887754
No 15
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=45.88 E-value=1.9e+02 Score=34.29 Aligned_cols=238 Identities=12% Similarity=0.181 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHh---cCC--hHHHHHH-HHHHHHHHHHHH
Q 003157 451 IEIFQTAFLTLCLTRLSDLVNSVFPMSSRGSVPSKEQISRILSRIQEEIEAV---HMD--GRLTLLV-LREIGKVLILVA 524 (843)
Q Consensus 451 l~~fe~ayLsrs~~Rl~~~v~~~Fp~~~r~~~Ps~~el~~i~r~i~~EL~~a---~~d--~~L~~~v-~~~v~k~l~l~~ 524 (843)
=-.+|.- -+..|+.+-++. |. . .++++..+..+...|.+.|+.+ +-. |....+. ...--.-++.|-
T Consensus 369 WL~~Ek~---fA~~rf~~Ii~s--~d--~-lt~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~Kl~f~IqiqL~d~Y~ 440 (706)
T 3fhn_A 369 WINYEVE---MANRQFINITKN--PE--D-FPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLMTCSLIFMNLTSSYL 440 (706)
T ss_dssp HHHHHHH---HHHHHHHHTTSS--GG--G-GGGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHhC--Cc--c-CCHHHHHHHHHHHHHHHhccccchhhcccccchHHHHHHHHHHhhHHHHH
Confidence 3344553 366776666543 11 1 2568999999999999877766 322 1111122 122223334454
Q ss_pred HHHHhhcccCCCccccCCCCCHHHH--HHHHHHHHHHHHHHHHHHhhcC-----CcHHHH--------HhhhhhHHHHHH
Q 003157 525 ERAEYQISTGPEARQIPGPATSAQI--KNFALCQHLQEIYTRMSSMITG-----LPPIAA--------EVLSPSLGTIYG 589 (843)
Q Consensus 525 ~k~e~~l~~~~~a~qv~~~~t~~Q~--~N~~L~n~l~~~~~~l~~~l~~-----~p~~~~--------~~l~~sl~~~~~ 589 (843)
.+... ++. +++..|..|. .-+..+|+++++...+..-=.. +=.... .++...+.....
T Consensus 441 ~~L~~---~s~----lgr~~tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~~gSIFDetIs~Y~~ 513 (706)
T 3fhn_A 441 DYILT---VDS----LNETRTKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKKYNSLFQNVENDYEK 513 (706)
T ss_dssp HHHHT---CCC----SCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHH
T ss_pred HHHhC---ccc----cccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCcccCccHHHHHHHHHH
Confidence 44432 211 1122345443 2233445555555333321111 000000 134555555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHH-HhccccCcccccCcc----CCCCCChhHHHHHHHHHHHHHHhhccc-CCCCCCccc
Q 003157 590 VACD-SVTSLFQAMIDGLESCIL-QIHDQNFSVLGMDAA----MDNNASPYMEELQKCILHFRSEFLSRL-LPSSANTTT 662 (843)
Q Consensus 590 ~~~~-~v~pL~~s~~~~ie~il~-~MH~e~~~~~~~~~~----~~~~~S~Ym~eL~~~l~~~~~~~l~~~-~~~~~~~~~ 662 (843)
+..+ +..-++..+...+.+-+- =+|...|.+.+...+ ....+|+-..+....+...-. ++.+. -+.
T Consensus 514 L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~-~L~~~lL~~------ 586 (706)
T 3fhn_A 514 AMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLIN-KLDSMDIPL------ 586 (706)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHH-HHHTSCCCH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHH-HHHHccCCH------
Confidence 5555 555555555555555443 334456765421111 112456655444444433332 33333 222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHc
Q 003157 663 AGTETICTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELELAVG 714 (843)
Q Consensus 663 ~~~~~~~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~aLs 714 (843)
..+..+.+.++..+...|..++-..-=.+++|..|+..||..|-..+.
T Consensus 587 ----~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~ 634 (706)
T 3fhn_A 587 ----AISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS 634 (706)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc
Confidence 234445566776666777777777667999999999999999766565
No 16
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=44.36 E-value=50 Score=27.41 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 003157 118 LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSN 162 (843)
Q Consensus 118 i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~r 162 (843)
.++++..++.+...++.|+..+.||=.+...-..++..+...|++
T Consensus 2 ~~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~ 46 (74)
T 3swf_A 2 AMGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEK 46 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777778888888877777666666666666666555
No 17
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=43.50 E-value=3.7e+02 Score=29.61 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003157 111 LLNQLSS-LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLI 187 (843)
Q Consensus 111 LL~q~~~-i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~ 187 (843)
+++-..+ ..++..++..++..+..+..-.+++++-+..-..........++++..... ...+|+.+.+.+...+
T Consensus 236 lleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~---~~~e~l~i~~~i~e~l 310 (413)
T 4hpq_C 236 LFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELR---KHEEYISVFEGISALI 310 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 4443333 557788888888888877777777766665555555555555555554443 5555666666666665
No 18
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=42.92 E-value=63 Score=29.24 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHhhcccCCC-CCCccccchhhH--HHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHH
Q 003157 634 YMEELQKCILHFRSEFLSRLLPS-SANTTTAGTETI--CTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELE 710 (843)
Q Consensus 634 Ym~eL~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE 710 (843)
.+.+.++-.....++|++++.+. .. .+..+| ...++.+|| -.|..+. -|||.|.=|-||..||..-|
T Consensus 39 ~~~~a~~~ar~~ind~vsrYRr~~~v----~g~~Sf~tm~tAlNaLA----GHY~s~g--~~PlPek~k~Rl~~el~~AE 108 (115)
T 2kmf_A 39 NRQEVQDTARGQINDYISRYRRKGDA----GGLKSFTTMQTALNSLA----GYYTSYG--ARPIPEKLKKRLQLEFTQAE 108 (115)
T ss_dssp THHHHHHHHHHHHHHHHHHTHHHHCS----SSCHHHHHHHHHHHHHH----HHHHHHS--SCCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCc----cccchHHHHHHHHHHHH----HHHhhcC--CCCCCHHHHHHHHHHHHHHH
Confidence 36677777777777777777532 11 122222 345566666 4466666 99999999999999999999
Q ss_pred HHHc
Q 003157 711 LAVG 714 (843)
Q Consensus 711 ~aLs 714 (843)
.+|.
T Consensus 109 ~al~ 112 (115)
T 2kmf_A 109 RSIE 112 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
No 19
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=41.38 E-value=1.1e+02 Score=27.45 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCCCCccccchhhH--HHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHH
Q 003157 634 YMEELQKCILHFRSEFLSRLLPSSANTTTAGTETI--CTRLVRSMASRVLIFFIRHASLVRPLSESGKLRMARDMAELEL 711 (843)
Q Consensus 634 Ym~eL~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~la~r~i~~Fl~hasLlRPL~e~GklrLa~D~a~LE~ 711 (843)
.+.+.++-.....++|++++.+.. ...+..+| ...++.+|| --|..+. -|||.|.=|-||..+|..-|.
T Consensus 35 ~~~~a~~~ar~~ind~vsrYRr~~---~v~g~~Sfttm~tAlNaLA----GHY~s~g--~~PlPek~k~Rl~~el~~AE~ 105 (113)
T 2y6x_A 35 NKKAAQAEARKKLNDFFALYRRDD---SLRSLSSFMTMQTALNSLA----GHYSSYP--NRPLPEKLKARLEQEFKQVEL 105 (113)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCH---HHHTSHHHHHHHHHHHHHH----HHHHHCT--TSCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CccccchHHHHHHHHHHHH----HHHhhcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 377777777777888888887541 01122222 344555566 4455555 999999999999999999999
Q ss_pred HHc
Q 003157 712 AVG 714 (843)
Q Consensus 712 aLs 714 (843)
+|.
T Consensus 106 al~ 108 (113)
T 2y6x_A 106 ALD 108 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 984
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.74 E-value=3e+02 Score=34.38 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 003157 127 TVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELL 170 (843)
Q Consensus 127 ~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LL 170 (843)
........+...+..+..++.+--+.+++..+..+.+.+..+-+
T Consensus 974 ~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555444433
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.60 E-value=2.4e+02 Score=30.61 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003157 87 ERLHHAIRLLENQLR 101 (843)
Q Consensus 87 ~kL~~~i~eld~~I~ 101 (843)
+.+...|++|..+|.
T Consensus 63 r~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 63 QDFTSRINKLRDSLF 77 (390)
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555666666554
No 22
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=36.37 E-value=3.4e+02 Score=27.10 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=49.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLS 161 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~ 161 (843)
+.+.+.||.....+--++|...|..-....-.....+......+..|...+..+...++.+...+.+-...++.....+.
T Consensus 106 VA~EVRkLA~~t~~at~~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~ 185 (227)
T 1qu7_A 106 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVA 185 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456889888888888888877654433333333444555555666666666666666665555555555555554444
Q ss_pred HHHH
Q 003157 162 NLHR 165 (843)
Q Consensus 162 rL~~ 165 (843)
.+..
T Consensus 186 ~i~~ 189 (227)
T 1qu7_A 186 EMDR 189 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 23
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=35.88 E-value=1.6e+02 Score=23.23 Aligned_cols=58 Identities=7% Similarity=0.189 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSE 145 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~ 145 (843)
..+.+++..++++..-| ..|.+.+|+.-..++.+...-+.+...-........+|+.+
T Consensus 4 d~l~~v~~~l~ev~~iM----~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 61 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIM----RVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777775544 57888899999999988888888888888888888887764
No 24
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.46 E-value=1.6e+02 Score=25.61 Aligned_cols=59 Identities=7% Similarity=0.186 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003157 84 STAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSEL 146 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I 146 (843)
..+.+++..++++..-+ ..|.+.+|+.-.+++.+...-+.+...-........+|+.+.
T Consensus 30 d~l~~vq~eldeVk~IM----~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIM----RVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888876655 577888999999999999988888888888888888887653
No 25
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=32.60 E-value=43 Score=27.70 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=30.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 003157 146 LSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVIN 225 (843)
Q Consensus 146 I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~ 225 (843)
+.+--.++..++..|.+..+...= |+.|++-|++++ +-.|.|-+..++..++++.+|.+|.-|.
T Consensus 14 ~~e~k~kv~~LQ~eLdtsE~VQrD------FVkLSQsLQvqL----------E~IRqadt~~qvr~Il~e~~l~di~~~~ 77 (79)
T 1tu3_F 14 MFEEKNKAQRLQTELDVSEQVQRD------FVKLSQTLQVQL----------ERIRQADSLERIRAILNDTKLTDINQLP 77 (79)
T ss_dssp -------CHHHHHHHHHHHHHHHH------HHHHHHHHHHHH----------HHHHTCCSHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH----------HHHHhhhhHHHHHHHHccCccchHhhCC
Confidence 333334444455555544443322 778888888775 3466777788999999888888876554
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.55 E-value=3.9e+02 Score=26.11 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
.+......++..++..-+.+..+==-..=..++.++.....++..+..|..-++.+|.+...
T Consensus 20 ~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555433333222111111223334444444444444444444444444333
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.74 E-value=3.5e+02 Score=29.32 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHH---HHHHHHHHhhCHHHHHHHhhhhhHHHHHH
Q 003157 82 PASTAERLHHAIRLL---ENQLRSEVLSRHTDLLNQLSSLNHAEHAL 125 (843)
Q Consensus 82 i~~~l~kL~~~i~el---d~~I~~~V~~n~~~LL~q~~~i~~le~~l 125 (843)
+...+++|+..++++ .+.++..+..=++-|=.....+++.+.++
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~ 111 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTF 111 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 555566655555444 34454444443333333333444444433
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.61 E-value=1.1e+02 Score=25.28 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 86 AERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRS 144 (843)
Q Consensus 86 l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~ 144 (843)
+.+|++.++.-+.+|+ .+-.-|+.++..|+.-...|..|+..+++.|+
T Consensus 21 i~eLq~~L~~K~eELr-----------~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELR-----------QRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666655555554 22233666666666666666666666666655
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.67 E-value=2.9e+02 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003157 122 EHALSTVRSAVSSLQSSVRRVRS 144 (843)
Q Consensus 122 e~~l~~i~~~i~~L~~s~~RLr~ 144 (843)
+..+..++..|..+...=.|+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.67 E-value=3e+02 Score=25.50 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 003157 127 TVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHR 165 (843)
Q Consensus 127 ~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~ 165 (843)
.++..+..+...+..|++++..--.+++.....+..+..
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444433333
No 31
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.48 E-value=1.8e+02 Score=24.59 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 003157 111 LLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIK 154 (843)
Q Consensus 111 LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~ 154 (843)
++.-...++.++..+..++..++.++-.++.++.+-.+-|..+.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666666666666666666666666666665554
No 32
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.19 E-value=2.6e+02 Score=21.89 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 85 TAERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSE 145 (843)
Q Consensus 85 ~l~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~ 145 (843)
.+.+++..++++..-+ ..|.+.+|..-..++.+...-+.+...-........+|+.+
T Consensus 3 ~l~~vq~~l~evk~iM----~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 59 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIM----RDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677776665544 56778889888888888888888888888888888887764
No 33
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=24.14 E-value=3.7e+02 Score=23.64 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 102 SEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQH 172 (843)
Q Consensus 102 ~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~ 172 (843)
..+.++|.++.+--.++.++......+..-+..=..-++|+...|....+.++.-..+|++...-..--|+
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk 84 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34445555555555566666666666666666666677777777777777777777666665444444333
No 34
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.07 E-value=2.2e+02 Score=23.59 Aligned_cols=42 Identities=5% Similarity=0.167 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 003157 118 LNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQ 159 (843)
Q Consensus 118 i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~ 159 (843)
++.++..|+.++..+..|...|.--+.++-..-.+++.....
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555666666665555555555555555555554443
No 35
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.21 E-value=1.5e+02 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 121 AEHALSTVRSAVSSLQSSVRRVRSE 145 (843)
Q Consensus 121 le~~l~~i~~~i~~L~~s~~RLr~~ 145 (843)
++..+..++.-++.|+..++||...
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555443
No 36
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.75 E-value=1.5e+02 Score=31.52 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=27.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 003157 111 LLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPY 150 (843)
Q Consensus 111 LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy 150 (843)
++.+-..+..++..++..+..|+.|+..+..|+..+..|.
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~ 60 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455566777777777777777777777777776666553
No 37
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=21.73 E-value=19 Score=23.71 Aligned_cols=9 Identities=56% Similarity=1.283 Sum_probs=7.5
Q ss_pred CCCcccHHH
Q 003157 817 KEFSPVYPL 825 (843)
Q Consensus 817 ~~~~~~y~~ 825 (843)
..|.||||.
T Consensus 9 ddFnPVYPY 17 (26)
T 1x9t_B 9 DTFNPVYPY 17 (26)
T ss_pred ccCcccccC
Confidence 679999983
No 38
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.68 E-value=3.1e+02 Score=21.86 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSE 145 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~ 145 (843)
.+++..+.++-. ....|.+.+++.-..++.++...+.++.+-.+......+|+.+
T Consensus 7 ~~v~~qv~ev~~----iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 7 EGVKGAASGVVG----ELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444443 3346777788888888888887788888888887777777664
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.41 E-value=6.4e+02 Score=25.41 Aligned_cols=141 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 003157 88 RLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTT 167 (843)
Q Consensus 88 kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~ 167 (843)
+.-++++++|.+| ..+...-..| -..+.+++..+..++..+..++..++.++.++..--..+......+++...-.
T Consensus 8 ~~L~~LQ~lD~~i-~~l~~~~~~l---p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 8 KQLIEISHLDKEI-DSLEPLIREK---RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHH-HHTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 168 ELLQHTIRALRLSKKLRDLIAPAEAEPEKLDLTKAAQLHCEIVTMCKEYDLSGIDVINEELLWVKEVGEKLRNEAMKV 245 (843)
Q Consensus 168 ~LLR~~~rfl~L~kRL~~~~~~~~~~~~~~dl~kaA~~l~EL~~Ll~~~~L~~I~vV~~~~~~v~~~r~~v~~~a~~~ 245 (843)
+..+..--|-.|.+.++.+- +.+..+=.-+.|+..-++... ..+......+...+..+...-...
T Consensus 84 ~~v~~~kE~~aL~kEie~~~---------~~i~~lE~eile~~e~ie~~~----~~l~~~~~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 84 SEIKSERELRSLNIEEDIAK---------ERSNQANREIENLQNEIKRKS----EKQEDLKKEMLELEKLALELESLV 148 (256)
T ss_dssp HHCSSSSHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
No 40
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=21.13 E-value=1.4e+02 Score=22.01 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhHhhhchhhHHHHHHHHH
Q 003157 381 RVWEGLVKAFANQMKSAFTASSFVKEIFTSGYPKLLSMIENLL 423 (843)
Q Consensus 381 ~FW~~la~~~~~~~~~a~~~s~~v~q~L~~~yPkllrl~~~l~ 423 (843)
.||+.+-+.++..+..+..--|||+ +..++--.+..+|.+|+
T Consensus 2 ~mWErVk~ilks~l~~aS~iPGPVG-~~asGi~gl~~l~~~~~ 43 (44)
T 1nov_D 2 TFWERVRSILKSGLNFASTIPGPVG-VAATGIKGIIETIGSLW 43 (44)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchh-HHHHhHHHHHHHHHHhc
Confidence 5899999999888887766678887 55566666777776654
No 41
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.59 E-value=2.5e+02 Score=26.84 Aligned_cols=17 Identities=0% Similarity=0.198 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLEN 98 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~ 98 (843)
|...+.+|...+++|++
T Consensus 48 I~~~i~~i~~~v~~l~~ 64 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKK 64 (180)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 42
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.46 E-value=3.9e+02 Score=23.53 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 127 TVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQH 172 (843)
Q Consensus 127 ~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~ 172 (843)
.++..+..+...+..++.+..+....++........|+...+.|+.
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333344444444444444444443
No 43
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.32 E-value=4.7e+02 Score=23.40 Aligned_cols=28 Identities=7% Similarity=0.157 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 121 AEHALSTVRSAVSSLQSSVRRVRSELSD 148 (843)
Q Consensus 121 le~~l~~i~~~i~~L~~s~~RLr~~I~e 148 (843)
|..-++.-...+..|+.+|...+..|.+
T Consensus 50 L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 50 LVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443
No 44
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.06 E-value=1.7e+02 Score=29.93 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003157 108 HTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTTELLQHTIRALRLSKKL 183 (843)
Q Consensus 108 ~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~~LLR~~~rfl~L~kRL 183 (843)
|.+||.+..=-..-.++++-+.-++..|+...++|+.++.+=-+.+..+-....++|...--|-.+.-+-.+...|
T Consensus 50 ~~~Ll~~L~lph~~~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L 125 (252)
T 3e98_A 50 HDELIPELRIPHQPGDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTV 125 (252)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred CHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3445544433233345566666667777777777777776666666666666666665444444333333333333
Done!