Query 003157
Match_columns 843
No_of_seqs 165 out of 222
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 15:21:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003157.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003157hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fbqa1 a.4.1.9 (A:2-80) Trans 25.1 1.2E+02 0.0088 22.6 7.8 63 233-295 4-72 (79)
2 d1t56a1 a.4.1.9 (A:22-94) Ethr 22.9 1.3E+02 0.0097 21.9 7.9 61 233-293 3-69 (73)
3 d1alua_ a.26.1.1 (A:) Interleu 22.6 96 0.007 27.5 7.5 20 82-101 62-81 (166)
4 d1vi0a1 a.4.1.9 (A:6-77) Hypot 19.6 1.5E+02 0.011 21.5 7.2 62 234-295 2-69 (72)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 18.1 1.2E+02 0.0087 25.2 6.9 48 120-167 85-132 (133)
6 d1ybza1 a.130.1.1 (A:2-75) mon 17.8 1.9E+02 0.014 21.6 9.0 24 84-107 1-24 (74)
7 d3c07a1 a.4.1.9 (A:15-89) Puta 16.6 1.4E+02 0.01 21.8 6.3 61 232-292 4-70 (75)
8 d1cuna2 a.7.1.1 (A:116-219) Sp 15.5 2.3E+02 0.017 21.7 7.9 67 87-154 33-100 (104)
9 d2fzta1 a.46.3.1 (A:1-78) Hypo 14.7 2.3E+02 0.017 21.3 8.7 34 92-125 2-36 (78)
10 d1owaa_ a.7.1.1 (A:) Spectrin 14.4 2.2E+02 0.016 23.5 8.0 82 88-172 64-145 (156)
No 1
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.09 E-value=1.2e+02 Score=22.58 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHH-hhhcccchhhhhhHHH-----HhhhhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 233 EVGEKLRNEAMKVLE-GGMEGLNQAQVGTGLQ-----VFYNLGELKVTVEHLVNKYKNMGVKSVNVALD 295 (843)
Q Consensus 233 ~~r~~v~~~a~~~L~-~gl~~~n~~~v~saLq-----v~~nLg~L~~~v~~lv~~~~~~~~k~i~~ald 295 (843)
+.|++|...+.+.+. +|....+-..|+.... +++.++.-.+.+..+++++...+...+...++
T Consensus 4 ~tre~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l~~~~~~~~~~~~~~~~~~~~~ 72 (79)
T d2fbqa1 4 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELD 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHHCcChhHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888885 6888887766655442 57778877788888888887777777777665
No 2
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.95 E-value=1.3e+02 Score=21.89 Aligned_cols=61 Identities=8% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHH-HhhhcccchhhhhhHHH-----HhhhhcchHHHHHHHHHHHHHHHHHHHHHh
Q 003157 233 EVGEKLRNEAMKVL-EGGMEGLNQAQVGTGLQ-----VFYNLGELKVTVEHLVNKYKNMGVKSVNVA 293 (843)
Q Consensus 233 ~~r~~v~~~a~~~L-~~gl~~~n~~~v~saLq-----v~~nLg~L~~~v~~lv~~~~~~~~k~i~~a 293 (843)
+.|+.|++-|.+++ .+|....+-.+|+..+. +++..+.-.+.+..++..+.+.+...+.+.
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 69 (73)
T d1t56a1 3 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTL 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888 46888887766654442 455577767777777777666555555443
No 3
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.59 E-value=96 Score=27.52 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 003157 82 PASTAERLHHAIRLLENQLR 101 (843)
Q Consensus 82 i~~~l~kL~~~i~eld~~I~ 101 (843)
-.++|.|+..|+.+-..-+.
T Consensus 62 ~e~CL~ri~~GL~~yq~lL~ 81 (166)
T d1alua_ 62 EETCLVKIITGLLEFEVYLE 81 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44789999999988777664
No 4
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=19.62 E-value=1.5e+02 Score=21.46 Aligned_cols=62 Identities=8% Similarity=0.144 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHH-HhhhcccchhhhhhHH-----HHhhhhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 003157 234 VGEKLRNEAMKVL-EGGMEGLNQAQVGTGL-----QVFYNLGELKVTVEHLVNKYKNMGVKSVNVALD 295 (843)
Q Consensus 234 ~r~~v~~~a~~~L-~~gl~~~n~~~v~saL-----qv~~nLg~L~~~v~~lv~~~~~~~~k~i~~ald 295 (843)
.+++|++.+.+.+ ..|....+-.+|+... -+++.++.-.+.+..++.++...+...+...++
T Consensus 2 r~~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 69 (72)
T d1vi0a1 2 KYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIK 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcccccHHHHHHHHCcCHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777 4677777765554433 257777777777788888777766666665543
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.12 E-value=1.2e+02 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 003157 120 HAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTT 167 (843)
Q Consensus 120 ~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~ 167 (843)
+.+..++-++.++..|+..++.+..++..-.+.+......++++.+|.
T Consensus 85 ~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677888888999999999999998888888888888888888764
No 6
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=17.76 E-value=1.9e+02 Score=21.61 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhC
Q 003157 84 STAERLHHAIRLLENQLRSEVLSR 107 (843)
Q Consensus 84 ~~l~kL~~~i~eld~~I~~~V~~n 107 (843)
+.|+.|...|+++|++|-.++..+
T Consensus 1 t~L~~lR~~ID~iD~~i~~Ll~~R 24 (74)
T d1ybza1 1 TTLKLLRKEIDKIDNQIISLLKKR 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999997666554
No 7
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=16.59 E-value=1.4e+02 Score=21.80 Aligned_cols=61 Identities=8% Similarity=0.194 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHH-hhhcccchhhhhhHHH-----HhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 003157 232 KEVGEKLRNEAMKVLE-GGMEGLNQAQVGTGLQ-----VFYNLGELKVTVEHLVNKYKNMGVKSVNV 292 (843)
Q Consensus 232 ~~~r~~v~~~a~~~L~-~gl~~~n~~~v~saLq-----v~~nLg~L~~~v~~lv~~~~~~~~k~i~~ 292 (843)
++.|+.|++.+.+.+. .|....+..+|+.... +++.++.-.+.+..+++.+...+...+..
T Consensus 4 e~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~~~~~~~~~ 70 (75)
T d3c07a1 4 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVRE 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888988888885 6888887766655442 46667766666666666655554444433
No 8
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.50 E-value=2.3e+02 Score=21.68 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 003157 87 ERLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNH-AEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIK 154 (843)
Q Consensus 87 ~kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~-le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~ 154 (843)
..+....+++.++|.. -..++..|...+..+-. -...-..|+..+..|+...+.|...+.+.-..++
T Consensus 33 ~~ll~~h~~~~~ei~~-~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le 100 (104)
T d1cuna2 33 QGLLKKHEAFETDFTV-HKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 100 (104)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555532 33344445554444221 1112255666666666666666665555444433
No 9
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=14.73 E-value=2.3e+02 Score=21.26 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhh-CHHHHHHHhhhhhHHHHHH
Q 003157 92 AIRLLENQLRSEVLS-RHTDLLNQLSSLNHAEHAL 125 (843)
Q Consensus 92 ~i~eld~~I~~~V~~-n~~~LL~q~~~i~~le~~l 125 (843)
+|.++++.|+..|.. -|+.|..-..+.+.+-..+
T Consensus 2 ~I~EiErkIDeaIE~EDyE~L~~LL~kReell~~L 36 (78)
T d2fzta1 2 NIDEIERKIDEAIEKEDYETLLSLLNKRKELMEGL 36 (78)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHC
Confidence 478899999888876 7888777666665543333
No 10
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.37 E-value=2.2e+02 Score=23.50 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 003157 88 RLHHAIRLLENQLRSEVLSRHTDLLNQLSSLNHAEHALSTVRSAVSSLQSSVRRVRSELSDPYKSIKSKTIQLSNLHRTT 167 (843)
Q Consensus 88 kL~~~i~eld~~I~~~V~~n~~~LL~q~~~i~~le~~l~~i~~~i~~L~~s~~RLr~~I~ePy~~i~~~t~~L~rL~~t~ 167 (843)
.+..-|.+....+..........+-.+....+.++..+..-++.+..+....++|... .|+. .......+..|..--
T Consensus 64 ~l~~Wl~e~e~~~~~~~~~d~~~~~~~~~~h~~l~~ei~~~~~~~~~l~~~g~~L~~~--~~~~-~~~i~~~l~~l~~~W 140 (156)
T d1owaa_ 64 DLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTM--GHSA-HEETKAHIEELRHLW 140 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS--CHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcc-HHHHHHHHHHHHHHH
Confidence 3333344444444443333444444555556677777777788888888887777553 3433 345555555555555
Q ss_pred HHHHH
Q 003157 168 ELLQH 172 (843)
Q Consensus 168 ~LLR~ 172 (843)
+-|..
T Consensus 141 ~~L~~ 145 (156)
T d1owaa_ 141 DLLLE 145 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
Done!