BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003160
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust.
Identities = 349/842 (41%), Positives = 493/842 (58%), Gaps = 67/842 (7%)
Query: 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
++RY RM+G +WLPGTDHAGIATQ+VVE++L EG R +L R++F +RVW+WKE+ G
Sbjct: 63 LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122
Query: 61 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
GTI Q+KRLGAS DW+RE FT+DE+ SRAV AF R + +GL Y+ +VNW P +T
Sbjct: 123 GTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETT 182
Query: 121 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 180
+SDLEVE PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G
Sbjct: 183 LSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGK 241
Query: 181 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240
A +P+T +PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G +
Sbjct: 242 RARIPLTEV-WIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300
Query: 241 --NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 298
V RGLDRFEAR+K E G VK+E +T+ + R G IE + QW+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360
Query: 299 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--- 355
+ M PLAE+ L + +G++ +PER++K+ WL N+KDW ISRQLWWGH+IP WY
Sbjct: 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 356 ----VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 411
V + E Y+ + EA K +D DV DTWFSSALWP STLGWP+
Sbjct: 421 QAVNVPRPERYLEDPTSCEACGSPRLK--------RDEDVFDTWFSSALWPLSTLGWPE- 471
Query: 412 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 471
+D K FYP +L TG+DILF WV+RM + G F G PF V LHGL+ D +G+KMSK
Sbjct: 472 ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531
Query: 472 TLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL- 529
+ GNVIDP++ ++ +GADALRF I L T GQD+ L + L + F NKL+NA +F+L
Sbjct: 532 SKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591
Query: 530 --QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 587
+ ++ D LA +F + S+L ++ +TA Y+
Sbjct: 592 SREGFQAKEDTP----TLADRF---------------MRSRLSRGVEEITALYEALDLAQ 632
Query: 588 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVT 647
RE Y+ WS+F DWY+EA+K L + + + + + +LKLLHP MPF+T
Sbjct: 633 AAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAV-----LLKLLHPMMPFLT 687
Query: 648 EELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRIS 707
EL+Q+L KE L + WP+ R A + FE L+ A+R +AE + PA+ +
Sbjct: 688 SELYQALTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVR 745
Query: 708 ASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLA 767
+ E + + EV LSR DLL E P +++ V A +PL
Sbjct: 746 VYL---EGETAPVEENLEVFRFLSRADLL----PERPAKALVKAMPRVT-----ARMPLE 793
Query: 768 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 827
++D+ +R KRL ++ + + +L+S F EKAP++VV +A EA K NL
Sbjct: 794 GLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVV-----EAEEARLKENL 848
Query: 828 TK 829
+
Sbjct: 849 EQ 850
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 201/770 (26%), Positives = 328/770 (42%), Gaps = 103/770 (13%)
Query: 3 RYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE-LSRDEFTKRVWEWKEKYGG 61
RY M+G G D G+ +L VEK L + + +E + F + E Y
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEK 128
Query: 62 TITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 121
+ +R+ D TL+ ++ + L ++GL+Y+ +V + P T +
Sbjct: 129 EWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
Query: 122 SDLEVE--YSEEPGTLYYIKY------RVAGRSDFLTIATTRPETLFGDVALAVNPQDEH 173
S EV Y E Y+++ ++ L I TT P TL G+VA AV+P+ +
Sbjct: 189 SSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTY 248
Query: 174 YSQFIGMMAIV----------------------------------PMTYGRHVPIISDKY 199
+ +G A++ P + ++ Y
Sbjct: 249 AAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADY 308
Query: 200 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 259
V +E GTG++ +P D AR GLP+L ++++G L + F+GL EA + +
Sbjct: 309 VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKL--LVEPFKGLYFREANRAI 366
Query: 260 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319
DL GL K+E + P R + ++ WF+ ++ + E+
Sbjct: 367 LRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIR--NNQEIHW 424
Query: 320 MPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--VGKEE-----EYIVARNADEA 371
+P E Y WL N+ DW +SR +WG +P+W GKEE + + AR
Sbjct: 425 VPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPL 484
Query: 372 LEK--AHQKYGKNVEIY--------QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 421
E H+ Y VE+ + P V+D W+ S PF++L +P + F++ +P
Sbjct: 485 PEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFP 544
Query: 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 481
+ G D W + +G+ GS+ F +V HGLI D +G+KMSK+ GNV+DP D
Sbjct: 545 ADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWD 604
Query: 482 TIKEFGADALRFTISLGT---AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI 538
I++FGADALR+ I + A + ++ R T F LWN F
Sbjct: 605 IIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLT-LWNVYSF----------- 652
Query: 539 SRWEILLAYKFDEEECLCKAPLPEC------WVVSKLHMLIDTVTASYDKYFFGDVGRET 592
+ Y + L P PE W+++++ LI VT + + Y R
Sbjct: 653 -----FVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARAL 707
Query: 593 YDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQ 652
DF D + WY+ ++ R +++E D A A L + L PF PF+ E LWQ
Sbjct: 708 RDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQ 767
Query: 653 SLRKR-----KEALIVSPWPQT-------SLPRHMSAIKRFENLQSLTRA 690
+L + KE++ ++ WP+ +L M A+ + +L RA
Sbjct: 768 NLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARA 817
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 192/789 (24%), Positives = 347/789 (43%), Gaps = 103/789 (13%)
Query: 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
+VRY M+G ++PG D G L +E+ L +G+ R ++S EF ++ E+ +
Sbjct: 77 IVRYKTMQGFYAPYVPGWDTHG----LPIEQALTKKGVDRKKMSTAEFREKCKEFALEQI 132
Query: 61 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
+RLG D+ TL + A + F + +KGLIY+G V WSP+ +++
Sbjct: 133 ELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESS 192
Query: 121 VSDLEVEYSEEPGTLYYIKYRVAGRSDFL------TIATTRPETLFGDVALAVNPQ---- 170
+++ E+EY ++ Y+ + V + I TT P T+ +VA+ V+P+
Sbjct: 193 LAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYG 252
Query: 171 -----DEHY------------------------SQFIG-----MMAIVPMTYGRHVPIIS 196
E Y ++ G ++A P R +I+
Sbjct: 253 QYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVIN 311
Query: 197 DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEAR 256
+V + GTG + +PGH +DY++ ++ LP+++ ++ G E G F G+ +A
Sbjct: 312 GDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKAN 371
Query: 257 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGE 316
K + L E G +K + T P R + + + QWF ++ + + L A+E
Sbjct: 372 KAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTN 431
Query: 317 LTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY------IVGKEEEYIVA----- 365
+ + +IYN + + +W ISRQ WG +PV+Y I+ KE VA
Sbjct: 432 FKVNWGK-TRIYN-MVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAE 489
Query: 366 --------RNADEALEKAHQKYGK-NVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSADD 415
R A + L + G N ++ D++D WF S L P++S
Sbjct: 490 HGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELS--- 546
Query: 416 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN 475
+P M G D W + + G P+ + HG + D +G+KMSK+LGN
Sbjct: 547 ----FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGN 602
Query: 476 VIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNL--- 532
VI P +K+ GAD R +S D+ +S E L K+ N +F+L N+
Sbjct: 603 VIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDF 662
Query: 533 -PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRE 591
P + I E+L ++ ++++L + +Y+ + + ++ +E
Sbjct: 663 NPDTDSIPESELLEVDRY---------------LLNRLREFTASTINNYENFDYLNIYQE 707
Query: 592 TYDFFWSDFADWYIEASKARLYRSEYDSDAIIA-QAVLLYIFENILKLLHPFMPFVTEEL 650
+F + +++Y++ K LY + DS + Q VL I ++ KLL P + EE+
Sbjct: 708 VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEV 767
Query: 651 W-QSLRKRKEALIVSPWPQTSLPRH--MSAIKRFENLQ-SLTRAIRNARAEYSVEPAKRI 706
W + ++E++ ++ P+ + + F NL+ + RA+ AR E + +
Sbjct: 768 WSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEA 827
Query: 707 SASIVANEE 715
+I +N++
Sbjct: 828 KVTIASNDK 836
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 132 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 191
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTE-VW 60
Query: 192 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL--NEVAGLFRG 249
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 250 LDRFEARKKLWSDLEETGLAVKKEPHT 276
LDRFEAR+K E G VK+E +T
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEEDYT 147
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 132 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 191
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTE-VW 60
Query: 192 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL--NEVAGLFRG 249
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 250 LDRFEARKKLWSDLEETGLAVKKE 273
LDRFEAR+K E G VK+E
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEE 144
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 181/827 (21%), Positives = 303/827 (36%), Gaps = 260/827 (31%)
Query: 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
+ RY RM G+ L G D G+ + K A W
Sbjct: 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPA----------------PWTYDNI 125
Query: 61 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
+ +Q+K LG DW+RE T + R + F L++KGL+Y+ + VNW PN QT
Sbjct: 126 AYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTV 185
Query: 121 VS------------DLEVE-------------YSEE-----------PGTLYYIKYRVAG 144
++ D +VE Y++E P T+ ++ G
Sbjct: 186 LANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIG 245
Query: 145 RS-------------DFLTIATTRPETLFGDVALAV-------------NPQ-----DEH 173
RS + LT+ TTRP+T G LAV NP+ DE
Sbjct: 246 RSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDEC 305
Query: 174 YSQFI---------------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHN 218
+ + G A+ P+T G +P+ + +V E+GTG + PGHD
Sbjct: 306 RNTKVAEAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQR 364
Query: 219 DYLLARKLGLPILNV-MNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTL 277
DY A K GL I V + DG+ EP
Sbjct: 365 DYEFASKYGLNIKPVILAADGS---------------------------------EPDLS 391
Query: 278 RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD 337
+ +++G L + F ++ E A +A+ +LT M K+ N+ ++D
Sbjct: 392 QQALTEKG-----VLFNSGEFNGLD--HEAAFNAIAD-KLTAMGVGERKV-NY---RLRD 439
Query: 338 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALE----------------KAHQKYGK 381
W +SRQ +WG IP+ + E+ V D+ L KA ++ K
Sbjct: 440 WGVSRQRYWGAPIPMVTL----EDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAK 495
Query: 382 ----NVEIYQDPDVLDTWFSSALWPFSTLGWPD-----VSADDFKKFYPTTMLETG--HD 430
+ ++ D DT+ S+ W ++ P + ++ + P + G H
Sbjct: 496 TTVNGMPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHA 554
Query: 431 ILFFWVARMVMMGIEFTGSV----PFSHVYLHGLI------------------------- 461
I+ R + G V P + G++
Sbjct: 555 IMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVE 614
Query: 462 RDSQGR------------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQD 503
RD +GR KMSK+ N IDP ++ +GAD +R + + D
Sbjct: 615 RDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPA-D 673
Query: 504 LSLSIERLTANKA--FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLP 561
++L + A F ++W K + ++ ++ D++ A D KA
Sbjct: 674 MTLEWQESGVEGANRFLKRVW---KLVYEHT-AKGDVA------ALNVDALTENQKA--- 720
Query: 562 ECWVVSKLHMLIDTVTASYDKYFFGDVG-RETYDFFWSDFADWYIEASKARLYRSEYDSD 620
+ +H I VT D+G R+T++ + + + +KA ++ + D
Sbjct: 721 ---LRRDVHKTIAKVT--------DDIGRRQTFNTAIAAIMELMNKLAKA---PTDGEQD 766
Query: 621 AIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWP 667
+ Q LL ++++L+PF P + LWQ L+ + + +PWP
Sbjct: 767 RALMQEALL----AVVRMLNPFTPHICFTLWQELKGEGD-IDNAPWP 808
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 162/717 (22%), Positives = 280/717 (39%), Gaps = 177/717 (24%)
Query: 69 RLGASCDWTRERFT--LDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 126
R G S DW+RE +T L S+ + F +L EKG I +G++ V W P + T + D ++
Sbjct: 139 RAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL 198
Query: 127 EYSEEPGTLYYI----KYRVAGRSDFLTIATTRPETLFGDVALAVNP------------- 169
E+ L YI + R G +L AT RPET++G + VNP
Sbjct: 199 MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKD 258
Query: 170 -----------------QDEHY--------SQFIGMMAIVPMTYGRHVPIISDKYVDKEF 204
QD + IG P++ G V I+ ++VD +
Sbjct: 259 KEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDPDN 317
Query: 205 GTGVLKISPGHDHNDYLLARKL--------------------------------GLPILN 232
TGV+ P H D++ L P +
Sbjct: 318 ATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVE 377
Query: 233 VMNKDGTLNEV------------------AGLFR-----GLDRFEARKKLWSDLEETGLA 269
+NK G ++ G+F+ G E ++ + ++ E G+A
Sbjct: 378 EVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIA 437
Query: 270 VKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALHAVEKGELTIMPE----R 323
+ S+ G + ++ QWF+ EKA A+E+ + I+PE +
Sbjct: 438 EIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALER--MKILPETRRAQ 495
Query: 324 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNV 383
FE I + WL K C +R++ G +P W + E+++ +D + A+ +++
Sbjct: 496 FEAIID-WLD--KKAC-ARKIGLGTPLP-W-----DPEWVIESLSDSTIYMAYYTISRHI 545
Query: 384 -----EIYQDPDVLDTWFSSALW--PFSTL---------GWP----DVSADDFKKFYPTT 423
E DP+ L F ++ FS G P ++F+ +YP
Sbjct: 546 NKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD 605
Query: 424 MLETGHDI----LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 479
+G D+ L F++ V + F + ++G +G+KMSK+ GNV++
Sbjct: 606 WRCSGKDLIPNHLTFFIFNHVAI---FREEHWPKGIAVNGF-GTLEGQKMSKSKGNVLNF 661
Query: 480 IDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDIS 539
ID I+E GAD +R I + A D R K + I
Sbjct: 662 IDAIEENGADVVRLYI-MSLAEHDSDFDWRRKEVGKL------------------RKQIE 702
Query: 540 RWEILLAYKFDEEECLCKAPLPEC--WVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 597
R+ L++ +F E E L + W++ +L+ I T + +++ + +
Sbjct: 703 RFYELIS-QFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM 761
Query: 598 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654
+D WY+ ++ R D +A + VL + + ++L+ PF P + EELW+ L
Sbjct: 762 NDLR-WYLRRTEGR------DDEA--KRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 162/717 (22%), Positives = 280/717 (39%), Gaps = 177/717 (24%)
Query: 69 RLGASCDWTRERFT--LDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 126
R G S DW+RE +T L S+ + F +L EKG I +G++ V W P + T + D ++
Sbjct: 139 RAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL 198
Query: 127 EYSEEPGTLYYI----KYRVAGRSDFLTIATTRPETLFGDVALAVNP------------- 169
E+ L YI + R G +L AT RPET++G + VNP
Sbjct: 199 MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKD 258
Query: 170 -----------------QDEHY--------SQFIGMMAIVPMTYGRHVPIISDKYVDKEF 204
QD + IG P++ G V I+ ++VD +
Sbjct: 259 KEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDPDN 317
Query: 205 GTGVLKISPGHDHNDYLLARKL--------------------------------GLPILN 232
TGV+ P H D++ L P +
Sbjct: 318 ATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVE 377
Query: 233 VMNKDGTLNEV------------------AGLFR-----GLDRFEARKKLWSDLEETGLA 269
+NK G ++ G+F+ G E ++ + ++ E G+A
Sbjct: 378 EVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIA 437
Query: 270 VKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALHAVEKGELTIMPE----R 323
+ S+ G + ++ QWF+ EKA A+E+ + I+PE +
Sbjct: 438 EIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALER--MKILPETRRAQ 495
Query: 324 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNV 383
FE I + WL K C +R++ G +P W + E+++ +D + A+ +++
Sbjct: 496 FEAIID-WLD--KKAC-ARKIGLGTPLP-W-----DPEWVIESLSDSTIYMAYYTISRHI 545
Query: 384 -----EIYQDPDVLDTWFSSALW--PFSTL---------GWP----DVSADDFKKFYPTT 423
E DP+ L F ++ FS G P ++F+ +YP
Sbjct: 546 NKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD 605
Query: 424 MLETGHDI----LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 479
+G D+ L F++ V + F + ++G +G+KMSK+ GNV++
Sbjct: 606 WRCSGKDLIPNHLTFFIFNHVAI---FREEHWPKGIAVNGF-GTLEGQKMSKSKGNVLNF 661
Query: 480 IDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDIS 539
ID I+E GAD +R I + A D R K + I
Sbjct: 662 IDAIEENGADVVRLYI-MSLAEHDSDFDWRRKEVGKL------------------RKQIE 702
Query: 540 RWEILLAYKFDEEECLCKAPLPEC--WVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 597
R+ L++ +F E E L + W++ +L+ I T + +++ + +
Sbjct: 703 RFYELIS-QFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM 761
Query: 598 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654
+D WY+ ++ R D +A + VL + + ++L+ PF P + EELW+ L
Sbjct: 762 NDLR-WYLRRTEGR------DDEA--KRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 118/310 (38%), Gaps = 99/310 (31%)
Query: 67 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 126
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT +++ +V
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 127 --------------------------EYSEE----------PGTLYYIKYRVAGRSDF-- 148
Y+E P + ++ GRS+
Sbjct: 172 VEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAE 231
Query: 149 -----------LTIATTRPETLFGDVALAVNPQD-------------------------- 171
+ + TTRP+TLFG L + P+
Sbjct: 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKT 291
Query: 172 ---------EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 222
E F+G A+ P T G +PI + YV +GTG + P HD DY
Sbjct: 292 EIERQAEGREKTGVFLGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350
Query: 223 ARKLGLPILNVMNKDG-TLNEV-------------AGLFRGLDRFEARKKLWSDLEETGL 268
ARK GLPI V+ + G L E +G F G + E ++K+ + LEE GL
Sbjct: 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 410
Query: 269 AVKKEPHTLR 278
+ + LR
Sbjct: 411 GKGRVTYRLR 420
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 118/310 (38%), Gaps = 99/310 (31%)
Query: 67 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 126
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT +++ +V
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 127 --------------------------EYSEE----------PGTLYYIKYRVAGRSDF-- 148
Y+E P + ++ GRS+
Sbjct: 172 VEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAE 231
Query: 149 -----------LTIATTRPETLFGDVALAVNPQD-------------------------- 171
+ + TTRP+TLFG L + P+
Sbjct: 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKT 291
Query: 172 ---------EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 222
E F+G A+ P T G +PI + YV +GTG + P HD DY
Sbjct: 292 EIERQAEGREKTGVFLGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350
Query: 223 ARKLGLPILNVMNKDG-TLNEV-------------AGLFRGLDRFEARKKLWSDLEETGL 268
ARK GLPI V+ + G L E +G F G + E ++K+ + LEE GL
Sbjct: 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 410
Query: 269 AVKKEPHTLR 278
+ + LR
Sbjct: 411 GKGRVTYRLR 420
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 391 VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL----FFWVARMVMMGIEF 446
V WF + L S L +P+ A ++ F+P G DIL FW + GI
Sbjct: 223 VTAVWFDALLNYVSALDYPEGEA--YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPM 280
Query: 447 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLS 505
+ H+ + G + GRKMSKTLGNV+DP ++++G DALR+ + GQD
Sbjct: 281 -----YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTP 335
Query: 506 LSIERL 511
+S E L
Sbjct: 336 VSEEAL 341
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 394 TWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL----FFWVARMVMMGIEFTGS 449
WF + L S L +P+ A ++ F+P G DIL FW + GI
Sbjct: 226 VWFDALLNYVSALDYPEGEA--YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPM--- 280
Query: 450 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSI 508
+ H+ + G + GRKMSKTLGNV+DP ++++G DALR+ + GQD +S
Sbjct: 281 --YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSE 338
Query: 509 ERL 511
E L
Sbjct: 339 EAL 341
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 394 TWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL----FFWVARMVMMGIEFTGS 449
WF + L S L +P+ A ++ F+P G DIL FW + GI
Sbjct: 226 VWFDALLNYVSALDYPEGEA--YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPM--- 280
Query: 450 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSI 508
+ H+ + G + GRKMSKTLGNV+DP ++++G DALR+ + GQD +S
Sbjct: 281 --YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSE 338
Query: 509 ERL 511
E L
Sbjct: 339 EAL 341
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 55/258 (21%)
Query: 282 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN------- 334
S+RG + KQW + + A++ L E L P+ +K+ +W+
Sbjct: 185 SERGSFPVYKKPMKQWVLKITNYADRLL---EDLNLLDWPDSLKKLQTNWIGKEEIDGKI 241
Query: 335 ---IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ-------------- 377
++DW +RQ +WG PV Y Y++ DE +E H
Sbjct: 242 TYKLQDWIFARQRYWGEPFPV-YFDEDNNVYLI----DELVELPHMENIMPSGTGEGPLA 296
Query: 378 ------KYGKNVEIYQ-DPDVLDTWFSSALWPFSTLGWPD----------VSADDFKKFY 420
+Y KN +I++ D + + W S + + + + + + F K+
Sbjct: 297 TNTEWVQYKKNNKIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFSKWL 356
Query: 421 PTTMLETG--HDILFFWVARM---VMMGIEFTGSV-PFSHVYLHGLIRDSQGRKMSKTLG 474
P + G H +L AR ++ ++ + PF + G+I G+KMSK+LG
Sbjct: 357 PVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKDGQKMSKSLG 416
Query: 475 NVIDPIDTIKEFGADALR 492
NV++P + I+ FGAD LR
Sbjct: 417 NVVNPDEIIQNFGADTLR 434
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 66 QIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 125
Q+K LG S D+ +E T D R F ++++KGL VNW P L T +++ E
Sbjct: 115 QLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEE 174
Query: 126 V 126
+
Sbjct: 175 I 175
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 382 NVEIYQDPD-VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WV 436
V + PD V+ W + + +G+PD ++ F++++P + G DI+ F W
Sbjct: 225 GVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWP 284
Query: 437 ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTI 495
A ++ G+ + F+H +L ++G KMSK++GNV+DP++ + FG D +R F +
Sbjct: 285 AFLMSAGLPLPKRI-FAHGWLL-----NRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL 338
Query: 496 SLGTAGQDLSLSIERLTA--NKAFTNKLWN 523
GQD S + + + N N+L N
Sbjct: 339 REVPFGQDGSYNEDAIIGRVNADLANELGN 368
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 168/430 (39%), Gaps = 109/430 (25%)
Query: 286 GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP-ERFEKIYNHWLSNIKDWCISRQL 344
G +E + + +F + +K L E IMP ER +I + S +KD ISR
Sbjct: 174 GTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTT 233
Query: 345 W-WGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPF 403
+ WG +P G E+ V+ W +
Sbjct: 234 FDWGIPVP-----GDEKH-----------------------------VMYVWVDALTNYI 259
Query: 404 STLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPF-SHVYLH 458
+ LG+PD + D+ ++P G DI F W A ++ + +P V+ H
Sbjct: 260 TALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLM------SAQLPLPKRVFAH 312
Query: 459 GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLT--ANK 515
G + + +G KMSK++GNVIDP + ++ +G D LR F + GQD S S E + N
Sbjct: 313 GFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNA 371
Query: 516 AFTNKLWNAGK----FILQN----LPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVS 567
N L N + I +N +P S + + + D + + +
Sbjct: 372 DLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDD----Q 427
Query: 568 KLHMLID---TVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIA 624
LH+ + V A ++YF G+E + +D AR+
Sbjct: 428 ALHLALGAIFAVVAEANRYF---AGQEPWALRKTD---------PARM------------ 463
Query: 625 QAVLLYIFENILK----LLHPFMPFVTEELWQSLR----KRKEALIVS---------PWP 667
+LY+ +L+ ++ PF+P E+L L KR+ A +++ P P
Sbjct: 464 -GTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADVLASPLAGGTDLPAP 522
Query: 668 QTSLPRHMSA 677
Q PR++ A
Sbjct: 523 QPVFPRYVEA 532
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 53/182 (29%)
Query: 148 FLTIATTRPETLFGDVALAVNPQ---------------DEHYSQ---------------- 176
++ + TTRP+T+FG + + P+ + YS
Sbjct: 39 YIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRER 98
Query: 177 ---------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG 227
F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K
Sbjct: 99 TMEEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYD 157
Query: 228 LPILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKKEPH 275
LPI V+ +G + G F GLD A++K+ L++ GL KK +
Sbjct: 158 LPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217
Query: 276 TL 277
L
Sbjct: 218 RL 219
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 53/177 (29%)
Query: 148 FLTIATTRPETLFGDVALAVNPQ---------------DEHYSQ---------------- 176
++ + TTRP+T+FG + + P+ + YS
Sbjct: 45 YIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRER 104
Query: 177 ---------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG 227
F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K
Sbjct: 105 TMEEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYD 163
Query: 228 LPILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKK 272
LPI V+ +G + G F GLD A++K+ L++ GL KK
Sbjct: 164 LPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 220
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 53/177 (29%)
Query: 148 FLTIATTRPETLFGDVALAVNPQ---------------DEHYSQ---------------- 176
++ + TTRP+T+FG + + P+ + YS
Sbjct: 25 YIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRER 84
Query: 177 ---------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG 227
F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K
Sbjct: 85 TMEEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYD 143
Query: 228 LPILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKK 272
LPI V+ +G + G F GLD A++K+ L++ GL KK
Sbjct: 144 LPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 200
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 48/182 (26%)
Query: 138 IKYRVAGRSDFLTIATTRPETLFGDVALAV-------------NPQ-----DEHYSQFI- 178
I + V + LT+ TTRP+T G LAV NP+ DE + +
Sbjct: 15 ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVA 74
Query: 179 --------------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLAR 224
G A+ P+T G +P+ + +V E+GTG + PGHD DY A
Sbjct: 75 EAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFAS 133
Query: 225 KLGLPILNV-MNKDGTLNEV-------------AGLFRGLDRFEARKKLWSDLEETGLAV 270
K GL I V + DG+ ++ +G F GLD A + L G+
Sbjct: 134 KYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGE 193
Query: 271 KK 272
+K
Sbjct: 194 RK 195
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 388 DPD-VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMM 442
DP+ + WF + S L D + ++P + G DIL F W A ++ +
Sbjct: 222 DPEHTIYVWFDALFNYISAL------EDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSL 275
Query: 443 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAG 501
G E V F+H + +G+KMSKTLGNV+DP + ++E+G D +R F + G
Sbjct: 276 GYELPKKV-FAHGWW-----TVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFG 329
Query: 502 QDLSLS 507
QD S
Sbjct: 330 QDGDFS 335
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVEL--SRDEFTKRVWEWKEK 58
+ RY+R++ +L GTD G+ Q E++ GI EL E K++WE+
Sbjct: 34 IARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL----GISPKELVDRNAERFKKLWEF--- 86
Query: 59 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY 109
++T+ T D + V + F +++G IY G Y
Sbjct: 87 -------------LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEY 124
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 149 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 184
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 84
Query: 185 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 234
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 235 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 273
+++G L + F+GL EA + + DL GL K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEE 181
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 36/166 (21%)
Query: 149 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 184
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 30 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 89
Query: 185 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 234
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 90 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 149
Query: 235 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 280
+++G L + F+GL EA + + DL GL K+E + P
Sbjct: 150 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYP 193
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 149 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 184
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKA 84
Query: 185 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 234
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 235 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 273
+++G L + F+GL EA + + DL G K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGFLFKEE 181
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 149 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 184
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 84
Query: 185 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 234
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 235 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 273
+++G L + F+GL EA + + DL G K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGFLFKEE 181
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 414 DDFKKF--YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 467
DDF + +P + G DIL F W A ++ G+ + HG + +
Sbjct: 269 DDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLP-----KKIVAHGWWTKDR-K 322
Query: 468 KMSKTLGNVIDPIDTIKEFGADALRF 493
K+SK+LGNV DP++ +EFG DAL++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKY 348
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 22/109 (20%)
Query: 3 RYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGT 62
RYHR+KG L GTD G AE K+ ++S +FT
Sbjct: 40 RYHRVKGERVFALTGTDEHG---------QKVAEAAKQKQVSPYDFTT-----------A 79
Query: 63 ITSQIKRLGASCDWTRERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 109
+ + K+ D++ + F T +EQ V E + +L +KG IY G Y
Sbjct: 80 VAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRY 128
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 414 DDFKKF--YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 467
DDF + +P + G DIL F W A ++ G+ + HG + +
Sbjct: 269 DDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLP-----KKIVAHGWWTKDR-K 322
Query: 468 KMSKTLGNVIDPIDTIKEFGADALRF 493
K+SK+LGNV DP++ +EFG DAL++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKY 348
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 22/109 (20%)
Query: 3 RYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGT 62
RYHR+KG L GTD G AE K+ ++S +FT
Sbjct: 40 RYHRVKGERVFALTGTDEHG---------QKVAEAAKQKQVSPYDFTT-----------A 79
Query: 63 ITSQIKRLGASCDWTRERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 109
+ + K+ D++ + F T +EQ V E + +L +KG IY G Y
Sbjct: 80 VAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRY 128
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 414 DDFKKF--YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 467
DDF + +P + G DIL F W A ++ G+ + HG + +
Sbjct: 269 DDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLP-----KKIVAHGWWTKDR-K 322
Query: 468 KMSKTLGNVIDPIDTIKEFGADALRF 493
K+SK+LGNV DP++ +EFG DAL++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKY 348
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 22/109 (20%)
Query: 3 RYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGT 62
RYHR+KG L GTD G AE K+ ++S +FT
Sbjct: 40 RYHRVKGERVFALTGTDEHG---------QKVAEAAKQKQVSPYDFTT-----------A 79
Query: 63 ITSQIKRLGASCDWTRERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 109
+ + K+ D++ + F T +EQ V E + +L +KG IY G Y
Sbjct: 80 VAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRY 128
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 390 DVLDTWFSSALWPFSTLGWPDVSADDFK-KFYPTTMLETGHDILFF----WVARMVMMGI 444
D L +++ AL +T G + D +P + G DIL F W A ++
Sbjct: 262 DALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLM---- 317
Query: 445 EFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQD 503
+ +P + HG +K+SK+LGN DP++ KEFG DAL++ + + QD
Sbjct: 318 --SAELPLPERLVSHGWWTKDH-KKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQD 374
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 22/109 (20%)
Query: 3 RYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGT 62
RYHR+KG + GTD G Q V E A +G+ ++ + +
Sbjct: 57 RYHRVKGEEVFVMTGTDEHG---QKVAEAA-AKQGVSPMDFTT----------------S 96
Query: 63 ITSQIKRLGASCDWTRERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 109
++S+ K+ ++ F T + + V + + +L KG IY G Y
Sbjct: 97 VSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKY 145
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 428 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 483
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 294 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 347
Query: 484 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 539
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 348 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 394
Query: 540 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 599
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 395 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 449
Query: 600 FADWYIEASKARLYRSEYDSDAIIAQAVL---LYIFENILKLLHPFMPFVTE 648
A+ Y++ + + DA + QA+ + +F ++ L P +P +TE
Sbjct: 450 LANRYVDEQAPWVVAKQEGRDADL-QAICSMGINLFRVLMTYLKPVLPKLTE 500
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 428 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 483
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 295 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 348
Query: 484 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 539
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 349 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 395
Query: 540 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 599
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 396 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 450
Query: 600 FADWYIEASKARLYRSEYDSDAIIAQAVL---LYIFENILKLLHPFMPFVTE 648
A+ Y++ + + DA + QA+ + +F ++ L P +P +TE
Sbjct: 451 LANRYVDEQAPWVVAKQEGRDADL-QAICSMGINLFRVLMTYLKPVLPKLTE 501
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 428 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 483
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 307 GKDIVYFLSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 360
Query: 484 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 539
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 361 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 407
Query: 540 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 599
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 408 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 462
Query: 600 FADWYIEASKARLYRSEYDSDAIIAQAVL---LYIFENILKLLHPFMPFVTE 648
A+ Y++ + + DA + QA+ + +F ++ L P +P +TE
Sbjct: 463 LANRYVDEQAPWVVAKQEGRDADL-QAICSMGINLFRVLMTYLKPVLPKLTE 513
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 428 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 483
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 294 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 347
Query: 484 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 539
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 348 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 394
Query: 540 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 599
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 395 RNAGFINKRFD---GVLASELADPALYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 449
Query: 600 FADWYIEASKARLYRSEYDSDAIIAQAVL---LYIFENILKLLHPFMPFVTE 648
A+ Y++ + + DA + QA+ + +F ++ L P +P +TE
Sbjct: 450 LANRYVDEQAPWVVAKQAGRDADL-QAICSMGINLFRVLMTYLKPVLPKLTE 500
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 36/232 (15%)
Query: 428 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 483
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 294 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 347
Query: 484 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 539
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 348 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 394
Query: 540 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 599
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 395 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 449
Query: 600 FADWYIEASKARLYRSEYDSDAIIAQAVL---LYIFENILKLLHPFMPFVTE 648
A+ Y++ + + DA + QA+ + +F ++ L P +P +TE
Sbjct: 450 LANRYVDEQAPWVVAKQEGRDADL-QAICSMGINLFRVLMTYLKPVLPKLTE 500
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 451 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIER 510
PF ++ H + + K SK+LGN+I + +KE + LR+ + G LS S E
Sbjct: 252 PFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKEN 311
Query: 511 LTANKAFTNKLWNAGKFILQNLPSQN 536
L + + + A L+ LP N
Sbjct: 312 LENGRLALERFYLA----LRGLPVVN 333
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 460 LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 493
L++D + KMSK GN I D + E G+DALR+
Sbjct: 277 LLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRY 310
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 468 KMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNA 524
KMSK+LGN D +K + A+ +R+ + G L+ S E L +A +L+ A
Sbjct: 266 KMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTA 322
>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
(Fto) Protein Reveals Basis For Its Substrate
Specificity
Length = 495
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 78 RERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLY- 136
RE ++ E+L + V EAF+ LH+ G +++ + +L T VS + + PG Y
Sbjct: 42 REASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQ-GKDLLTPVSRILI---GNPGCTYK 97
Query: 137 YIKYRV 142
Y+ R+
Sbjct: 98 YLNTRL 103
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 204 FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE----VAGLFRGLDRFEARKKL 259
G+ VL P + YL K LPI N D E +A +R L +++KK+
Sbjct: 1 MGSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP--DSKKKI 58
Query: 260 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP--LVSKQWFVTMEPLAEKALHAVEKGEL 317
+ D V KE + R E + P ++S + + + L KA+ +K EL
Sbjct: 59 YQDAYRAEWQVYKEEIS-------RFKEQLTPSQIMSLEKEIMDKHLKRKAM--TKKKEL 109
Query: 318 TIM--PERFEKIYNHWLS 333
T++ P+R YN +++
Sbjct: 110 TLLGKPKRPRSAYNVYVA 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,325,627
Number of Sequences: 62578
Number of extensions: 1096420
Number of successful extensions: 3150
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3030
Number of HSP's gapped (non-prelim): 90
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)